TGB7	chr12	53585689	+
intron-3CDS	ENST00000468598	ENST00000422257		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000468598	ENST00000338737		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-3CDS	ENST00000468598	ENST00000550743		ChiTaRS3.1			BM149731	SFPQ	chr1	35658612	-	ITGB7	chr12	53585689	+
intron-intron	ENST00000329008	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000329008	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000329008	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000329008	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395275	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395275	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000395275	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395275	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395276	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395276	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000395276	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000395276	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000405452	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000405452	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000405452	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000405452	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000412588	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000412588	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000412588	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000412588	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000431984	ENST00000416947		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000431984	ENST00000493503		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-3UTR	ENST00000431984	ENST00000270139		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
intron-intron	ENST00000431984	ENST00000442357		ChiTaRS3.1			BE005671	CALN1	chr7	71633831	-	IFNAR1	chr21	34728281	+
5CDS-intron	ENST00000326639	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000326639		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000264584		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000441387		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000354456		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000506199		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000512292		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000394288		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000432347		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000427266		ChiTaRS3.1			AW450661	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000540393	ENST00000271277		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000540393	ENST00000607039		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000254695	ENST00000271277		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000254695	ENST00000607039		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000366401	ENST00000271277		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
3UTR-intron	ENST00000366401	ENST00000607039		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000542807	ENST00000271277		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000542807	ENST00000607039		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000574709	ENST00000271277		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000574709	ENST00000607039		ChiTaRS3.1			BE181351	RAP1GAP2	chr17	2939917	-	CTTNBP2NL	chr1	112945294	+
intron-intron	ENST00000388922	ENST00000409598		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000424281		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000304527		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000455740		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000409252		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000514152		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000427414		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000604030		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000409598		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000424281		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000304527		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000455740		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000409252		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000514152		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000427414		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000604030		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000409598		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000424281		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000304527		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000455740		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000409252		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000514152		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000427414		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000604030		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000409598		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000424281		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000304527		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000455740		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000409252		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000514152		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000427414		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000604030		ChiTaRS3.1			BF843581	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-3UTR	ENST00000336095	ENST00000295628		ChiTaRS3.1			CN263391	RNF24	chr20	3978897	+	LRRC58	chr3	120046819	+
intron-3UTR	ENST00000358395	ENST00000295628		ChiTaRS3.1			CN263391	RNF24	chr20	3978897	+	LRRC58	chr3	120046819	+
intron-3UTR	ENST00000432261	ENST00000295628		ChiTaRS3.1			CN263391	RNF24	chr20	3978897	+	LRRC58	chr3	120046819	+
intron-3UTR	ENST00000545616	ENST00000295628		ChiTaRS3.1			CN263391	RNF24	chr20	3978897	+	LRRC58	chr3	120046819	+
In-frame	ENST00000369221	ENST00000369221		ChiTaRS3.1			W52671	PNLIP	chr10	118315603	-	PNLIP	chr10	118318753	+
5CDS-intron	ENST00000369221	ENST00000470562		ChiTaRS3.1			W52671	PNLIP	chr10	118315603	-	PNLIP	chr10	118318753	+
intron-3CDS	ENST00000470562	ENST00000369221		ChiTaRS3.1			W52671	PNLIP	chr10	118315603	-	PNLIP	chr10	118318753	+
intron-intron	ENST00000470562	ENST00000470562		ChiTaRS3.1			W52671	PNLIP	chr10	118315603	-	PNLIP	chr10	118318753	+
intron-intron	ENST00000533902	ENST00000260665		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-intron	ENST00000533902	ENST00000409946		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-intron	ENST00000533902	ENST00000409659		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000280258	ENST00000260665		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000280258	ENST00000409946		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000280258	ENST00000409659		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000441050	ENST00000260665		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000441050	ENST00000409946		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
3UTR-intron	ENST00000441050	ENST00000409659		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-intron	ENST00000531521	ENST00000260665		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-intron	ENST00000531521	ENST00000409946		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-intron	ENST00000531521	ENST00000409659		ChiTaRS3.1			AI392841	PRSS23	chr11	86519939	-	LRPPRC	chr2	44184155	+
intron-3CDS	ENST00000355904	ENST00000355904		ChiTaRS3.1			BG024711	GTF2E2	chr8	30469976	+	GTF2E2	chr8	30469950	-
intron-intron	ENST00000355904	ENST00000522833		ChiTaRS3.1			BG024711	GTF2E2	chr8	30469976	+	GTF2E2	chr8	30469950	-
intron-3CDS	ENST00000522833	ENST00000355904		ChiTaRS3.1			BG024711	GTF2E2	chr8	30469976	+	GTF2E2	chr8	30469950	-
intron-intron	ENST00000522833	ENST00000522833		ChiTaRS3.1			BG024711	GTF2E2	chr8	30469976	+	GTF2E2	chr8	30469950	-
5CDS-5UTR	ENST00000491148	ENST00000491148		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
5CDS-5UTR	ENST00000491148	ENST00000282957		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
5CDS-intron	ENST00000491148	ENST00000498639		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
5CDS-5UTR	ENST00000282957	ENST00000491148		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
5CDS-5UTR	ENST00000282957	ENST00000282957		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
5CDS-intron	ENST00000282957	ENST00000498639		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
intron-5UTR	ENST00000498639	ENST00000491148		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
intron-5UTR	ENST00000498639	ENST00000282957		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
intron-intron	ENST00000498639	ENST00000498639		ChiTaRS3.1			BP325131	CPB1	chr3	148562318	+	CPB1	chr3	148545598	+
intron-intron	ENST00000334005	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000334005	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000334005	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378473	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378473	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378473	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000278655	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000278655	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000278655	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000414679	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000414679	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000414679	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000492632	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000492632	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000492632	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378501	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378501	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378501	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378493	ENST00000429644		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378493	ENST00000489715		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000378493	ENST00000477426		ChiTaRS3.1			BF346361	PLCB4	chr20	9149611	+	GBE1	chr3	81780156	+
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			AI133721	MEG3	chr14	101316334	-	MEG3	chr14	101316404	+
intron-intron	ENST00000261207	ENST00000380950		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000261207	ENST00000399334		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000261207	ENST00000325747		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000261207	ENST00000559398		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000450142	ENST00000380950		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000450142	ENST00000399334		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000450142	ENST00000325747		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000450142	ENST00000559398		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000437004	ENST00000380950		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000437004	ENST00000399334		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000437004	ENST00000325747		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000437004	ENST00000559398		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000546369	ENST00000380950		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000546369	ENST00000399334		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000546369	ENST00000325747		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000546369	ENST00000559398		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000550107	ENST00000380950		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000550107	ENST00000399334		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000550107	ENST00000325747		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
intron-intron	ENST00000550107	ENST00000559398		ChiTaRS3.1			AI809151	PPP1R12A	chr12	80311004	+	CEP152	chr15	49079669	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA719831	PPP6R3	chr11	68228296	+	DPP3	chr11	66276546	+
intron-intron	ENST00000215730	ENST00000215730		ChiTaRS3.1			AW939381	SNAP29	chr22	21218242	-	SNAP29	chr7	106392401	-
intron-3UTR	ENST00000371225	ENST00000371225		ChiTaRS3.1			AA938491	TACSTD2	chr1	59041333	-	TACSTD2	chr1	59041206	+
intron-intron	ENST00000331825	ENST00000359015		ChiTaRS3.1			BF738851	FTL	chr19	49469466	-	MAP3K5	chr6	137060018	+
intron-intron	ENST00000331825	ENST00000355845		ChiTaRS3.1			BF738851	FTL	chr19	49469466	-	MAP3K5	chr6	137060018	+
intron-intron	ENST00000331825	ENST00000463140		ChiTaRS3.1			BF738851	FTL	chr19	49469466	-	MAP3K5	chr6	137060018	+
intron-intron	ENST00000392869	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000392869		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000409214		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000392867		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000409298		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000344850		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000542155		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000241391		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000463875		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000467352		ChiTaRS3.1			AA572671	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000357056	ENST00000369646		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000357056	ENST00000257770		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000357056	ENST00000369651		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-intron	ENST00000328459	ENST00000369646		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000328459	ENST00000257770		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000328459	ENST00000369651		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-intron	ENST00000554654	ENST00000369646		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000554654	ENST00000257770		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-3UTR	ENST00000554654	ENST00000369651		ChiTaRS3.1			BU622781	TTC7B	chr14	91233316	-	NT5E	chr6	86203971	-
intron-5UTR	ENST00000162749	ENST00000162749		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000162749	ENST00000540022		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000162749	ENST00000366159		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-intron	ENST00000162749	ENST00000437813		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000540022	ENST00000162749		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000540022	ENST00000540022		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000540022	ENST00000366159		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-intron	ENST00000540022	ENST00000437813		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000366159	ENST00000162749		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000366159	ENST00000540022		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000366159	ENST00000366159		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-intron	ENST00000366159	ENST00000437813		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000437813	ENST00000162749		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000437813	ENST00000540022		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-5UTR	ENST00000437813	ENST00000366159		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-intron	ENST00000437813	ENST00000437813		ChiTaRS3.1			AU310151	TNFRSF1A	chr12	6439202	-	TNFRSF1A	chr12	6450995	-
intron-3CDS	ENST00000377298	ENST00000377298		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377298	ENST00000361311		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377298	ENST00000377288		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000377298	ENST00000477264		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000377298		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000361311		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000361311	ENST00000377288		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000361311	ENST00000477264		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000377298		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000361311		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000377288	ENST00000377288		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000377288	ENST00000477264		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000377298		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000361311		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-3CDS	ENST00000477264	ENST00000377288		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000477264	ENST00000477264		ChiTaRS3.1			BQ063711	CLSTN1	chr1	9795603	+	CLSTN1	chr1	9795534	-
intron-intron	ENST00000357389	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000357389	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000357389	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000357389	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000357389	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000357389	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000327773	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000476291	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000418959	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000450766	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000357389		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000327773		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000476291		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000418959		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000450766		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000355761	ENST00000355761		ChiTaRS3.1			BF755561	GAS6	chr13	114534547	-	GAS6	chr13	114535216	-
intron-intron	ENST00000509081	ENST00000361445		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000376838		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000495435		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000361445		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000376838		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000495435		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000361445		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000376838		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000495435		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000361445		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000376838		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000495435		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000361445		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000376838		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000495435		ChiTaRS3.1			BF845891	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
5CDS-3UTR	ENST00000356978	ENST00000356978		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000356978	ENST00000447653		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000356978	ENST00000555132		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000356978	ENST00000553542		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000356978	ENST00000544280		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-3UTR	ENST00000447653	ENST00000356978		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000447653	ENST00000447653		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000447653	ENST00000555132		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000447653	ENST00000553542		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000447653	ENST00000544280		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
intron-3UTR	ENST00000555132	ENST00000356978		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
intron-intron	ENST00000555132	ENST00000447653		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
intron-intron	ENST00000555132	ENST00000555132		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
intron-intron	ENST00000555132	ENST00000553542		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
intron-intron	ENST00000555132	ENST00000544280		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-3UTR	ENST00000553542	ENST00000356978		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000553542	ENST00000447653		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000553542	ENST00000555132		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000553542	ENST00000553542		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000553542	ENST00000544280		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-3UTR	ENST00000544280	ENST00000356978		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000544280	ENST00000447653		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000544280	ENST00000555132		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000544280	ENST00000553542		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
5CDS-intron	ENST00000544280	ENST00000544280		ChiTaRS3.1			AI918711	CALM1	chr14	90870820	-	CALM1	chr14	90872116	-
3UTR-3CDS	ENST00000540691	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000540691	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3CDS	ENST00000539106	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000539106	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3CDS	ENST00000222307	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000222307	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3CDS	ENST00000600796	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3UTR	ENST00000600796	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3CDS	ENST00000601630	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000601630	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3CDS	ENST00000599000	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3UTR	ENST00000599000	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3CDS	ENST00000595073	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000595073	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3CDS	ENST00000599319	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3UTR	ENST00000599319	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3CDS	ENST00000602094	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
3UTR-3UTR	ENST00000602094	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3CDS	ENST00000598830	ENST00000368003		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-3UTR	ENST00000598830	ENST00000473766		ChiTaRS3.1			AI198351	KXD1	chr19	18679889	-	UFC1	chr1	161127435	-
intron-intron	ENST00000372189	ENST00000368972		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372189	ENST00000392644		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372189	ENST00000481850		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372195	ENST00000368972		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372195	ENST00000392644		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372195	ENST00000481850		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372190	ENST00000368972		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372190	ENST00000392644		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000372190	ENST00000481850		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000481260	ENST00000368972		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000481260	ENST00000392644		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000481260	ENST00000481850		ChiTaRS3.1			AI572291	RAPGEF1	chr9	134452236	+	ARMC2	chr6	109270254	+
intron-intron	ENST00000411986	ENST00000411986		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000464926		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000370938		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000346806		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000411986		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000464926		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000370938		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000346806		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000411986		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000464926		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000370938		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000346806		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000411986		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000464926		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000370938		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000346806		ChiTaRS3.1			H72721	CTH	chr1	70879919	+	CTH	chr1	70879222	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BG011651	MALAT1	chr11	65266799	-	MALAT1	chr11	65266587	+
intron-intron	ENST00000366690	ENST00000572173		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000366690	ENST00000572992		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000366690	ENST00000381820		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000366690	ENST00000312499		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000366690	ENST00000576027		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000473894	ENST00000572173		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000473894	ENST00000572992		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000473894	ENST00000381820		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000473894	ENST00000312499		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-intron	ENST00000473894	ENST00000576027		ChiTaRS3.1			BU567991	RAB4A	chr1	229411064	-	RMI2	chr16	11369742	-
intron-3CDS	ENST00000544484	ENST00000544484		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544484	ENST00000357008		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544484	ENST00000309577		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544484	ENST00000544040		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-5UTR	ENST00000544484	ENST00000540960		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000357008	ENST00000544484		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000357008	ENST00000357008		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000357008	ENST00000309577		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000357008	ENST00000544040		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-5UTR	ENST00000357008	ENST00000540960		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000309577	ENST00000544484		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000309577	ENST00000357008		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000309577	ENST00000309577		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000309577	ENST00000544040		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-5UTR	ENST00000309577	ENST00000540960		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544040	ENST00000544484		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544040	ENST00000357008		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544040	ENST00000309577		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000544040	ENST00000544040		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-5UTR	ENST00000544040	ENST00000540960		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000540960	ENST00000544484		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000540960	ENST00000357008		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000540960	ENST00000309577		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-3CDS	ENST00000540960	ENST00000544040		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
intron-5UTR	ENST00000540960	ENST00000540960		ChiTaRS3.1			BQ575181	CHD4	chr12	6679741	+	CHD4	chr12	6691796	-
5CDS-3UTR	ENST00000304636	ENST00000304636		ChiTaRS3.1			AW376671	COL3A1	chr2	189876468	+	COL3A1	chr2	189876528	-
5CDS-3UTR	ENST00000304636	ENST00000317840		ChiTaRS3.1			AW376671	COL3A1	chr2	189876468	+	COL3A1	chr2	189876528	-
5CDS-3UTR	ENST00000317840	ENST00000304636		ChiTaRS3.1			AW376671	COL3A1	chr2	189876468	+	COL3A1	chr2	189876528	-
5CDS-3UTR	ENST00000317840	ENST00000317840		ChiTaRS3.1			AW376671	COL3A1	chr2	189876468	+	COL3A1	chr2	189876528	-
intron-3UTR	ENST00000607273	ENST00000526180		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000607273	ENST00000533280		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000607273	ENST00000525823		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000607273	ENST00000533475		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000607273	ENST00000527950		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000607273	ENST00000227251		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000607273	ENST00000531198		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000607273	ENST00000533971		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000389488	ENST00000526180		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000389488	ENST00000533280		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000389488	ENST00000525823		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000389488	ENST00000533475		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000389488	ENST00000527950		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000389488	ENST00000227251		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000389488	ENST00000531198		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-intron	ENST00000389488	ENST00000533971		ChiTaRS3.1			EB362401	PRIM2	chr6	57340351	+	CRYAB	chr11	111779352	+
intron-3UTR	ENST00000393704	ENST00000393704		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393704	ENST00000361618		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000393702		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000506110		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393704	ENST00000514683		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000361618	ENST00000393704		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000361618	ENST00000361618		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000393702		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000506110		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000361618	ENST00000514683		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393702	ENST00000393704		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000393702	ENST00000361618		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000393702		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000506110		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000393702	ENST00000514683		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000506110	ENST00000393704		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000506110	ENST00000361618		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000393702		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000506110		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000506110	ENST00000514683		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000514683	ENST00000393704		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-3UTR	ENST00000514683	ENST00000361618		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000393702		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000506110		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000514683	ENST00000514683		ChiTaRS3.1			BE073871	MFAP3L	chr4	170908746	+	MFAP3L	chr4	170908721	-
intron-intron	ENST00000507810	ENST00000507810		ChiTaRS3.1			N24581	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000507810	ENST00000261486		ChiTaRS3.1			N24581	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000261486	ENST00000507810		ChiTaRS3.1			N24581	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000261486	ENST00000261486		ChiTaRS3.1			N24581	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-3UTR	ENST00000415930	ENST00000276449		ChiTaRS3.1			AV703221	GPI	chr19	34893244	+	STAR	chr8	38001602	-
intron-3UTR	ENST00000356487	ENST00000276449		ChiTaRS3.1			AV703221	GPI	chr19	34893244	+	STAR	chr8	38001602	-
intron-3UTR	ENST00000586425	ENST00000276449		ChiTaRS3.1			AV703221	GPI	chr19	34893244	+	STAR	chr8	38001602	-
intron-intron	ENST00000314888	ENST00000405201		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000314888	ENST00000404621		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000314888	ENST00000404121		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000314888	ENST00000356219		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000314888	ENST00000397355		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000314888	ENST00000429285		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000405201		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000404621		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000404121		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000356219		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000397355		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000540444	ENST00000429285		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000405201		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000404621		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000404121		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000356219		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000397355		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000464379	ENST00000429285		ChiTaRS3.1			BF093171	TLN1	chr9	35697622	-	NCOR2	chr12	124943923	+
intron-intron	ENST00000437508	ENST00000334062		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000437508	ENST00000389544		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000437508	ENST00000542651		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000334062		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000389544		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000542651		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000334062		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000389544		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000542651		ChiTaRS3.1			AW291691	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000415930	ENST00000606498		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000415930	ENST00000294613		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000415930	ENST00000371180		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000415930	ENST00000472989		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000415930	ENST00000371177		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000356487	ENST00000606498		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000356487	ENST00000294613		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000356487	ENST00000371180		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000356487	ENST00000472989		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000356487	ENST00000371177		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000586425	ENST00000606498		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000586425	ENST00000294613		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000586425	ENST00000371180		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000586425	ENST00000472989		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000586425	ENST00000371177		ChiTaRS3.1			BE898941	GPI	chr19	34887484	-	TM2D1	chr1	62148079	-
intron-intron	ENST00000366603	ENST00000366603		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000366603	ENST00000264183		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000366603	ENST00000349213		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000366603	ENST00000494543		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000264183	ENST00000366603		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000264183	ENST00000264183		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000264183	ENST00000349213		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000264183	ENST00000494543		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000349213	ENST00000366603		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000349213	ENST00000264183		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000349213	ENST00000349213		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000349213	ENST00000494543		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000494543	ENST00000366603		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000494543	ENST00000264183		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000494543	ENST00000349213		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000494543	ENST00000494543		ChiTaRS3.1			BF379291	ARID4B	chr1	235441973	-	ARID4B	chr1	235441911	+
intron-intron	ENST00000364938	ENST00000535741		ChiTaRS3.1			DA643621	SNHG3	chr1	28834673	+	LRBA	chr4	151336756	-
intron-intron	ENST00000364938	ENST00000510413		ChiTaRS3.1			DA643621	SNHG3	chr1	28834673	+	LRBA	chr4	151336756	-
intron-intron	ENST00000364938	ENST00000503716		ChiTaRS3.1			DA643621	SNHG3	chr1	28834673	+	LRBA	chr4	151336756	-
intron-intron	ENST00000364938	ENST00000357115		ChiTaRS3.1			DA643621	SNHG3	chr1	28834673	+	LRBA	chr4	151336756	-
intron-intron	ENST00000364938	ENST00000507224		ChiTaRS3.1			DA643621	SNHG3	chr1	28834673	+	LRBA	chr4	151336756	-
intron-3CDS	ENST00000315843	ENST00000315843		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000315843	ENST00000464295		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000315843	ENST00000461057		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000464295	ENST00000315843		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000464295	ENST00000464295		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000464295	ENST00000461057		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000461057	ENST00000315843		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000461057	ENST00000464295		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000461057	ENST00000461057		ChiTaRS3.1			CD638211	GPR156	chr3	119963126	+	GPR156	chr3	119900209	-
intron-3CDS	ENST00000324379	ENST00000324379		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000324379	ENST00000356511		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000324379	ENST00000470213		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000324379	ENST00000372830		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-intron	ENST00000324379	ENST00000480169		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000356511	ENST00000324379		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000356511	ENST00000356511		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000356511	ENST00000470213		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000356511	ENST00000372830		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-intron	ENST00000356511	ENST00000480169		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000470213	ENST00000324379		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000470213	ENST00000356511		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000470213	ENST00000470213		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000470213	ENST00000372830		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-intron	ENST00000470213	ENST00000480169		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000372830	ENST00000324379		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000372830	ENST00000356511		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000372830	ENST00000470213		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000372830	ENST00000372830		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-intron	ENST00000372830	ENST00000480169		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000480169	ENST00000324379		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000480169	ENST00000356511		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000480169	ENST00000470213		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-3CDS	ENST00000480169	ENST00000372830		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-intron	ENST00000480169	ENST00000480169		ChiTaRS3.1			AU117291	PPIE	chr1	40219784	+	PPIE	chr1	40214654	+
intron-5UTR	ENST00000302014	ENST00000302014		ChiTaRS3.1			DA986581	CD14	chr5	140012299	-	CD14	chr5	140012730	-
intron-5UTR	ENST00000302014	ENST00000401743		ChiTaRS3.1			DA986581	CD14	chr5	140012299	-	CD14	chr5	140012730	-
intron-5UTR	ENST00000401743	ENST00000302014		ChiTaRS3.1			DA986581	CD14	chr5	140012299	-	CD14	chr5	140012730	-
intron-5UTR	ENST00000401743	ENST00000401743		ChiTaRS3.1			DA986581	CD14	chr5	140012299	-	CD14	chr5	140012730	-
intron-3UTR	ENST00000378707	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378707	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378707	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000359836	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000359836	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000541735	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000541735	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000343523	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000343523	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378677	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378677	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000357033	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000357033	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000474231	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000474231	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378723	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378723	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378702	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378702	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000361471	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000361471	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000378680	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000378680	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000288447	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000288447	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000378707		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000359836		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000541735		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000343523		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000378677		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000357033		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000474231		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-3UTR	ENST00000445312	ENST00000378723		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000378702		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000361471		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000378680		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000288447		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000445312	ENST00000445312		ChiTaRS3.1			BE179781	DMD	chrX	31284997	+	DMD	chrX	31138754	+
intron-intron	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425250	ABL1	chr9	133651594	+	BCR	chr22	23633431	+
intron-intron	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425250	ABL1	chr9	133651594	+	BCR	chr22	23633431	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425250	ABL1	chr9	133651594	+	BCR	chr22	23633431	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425250	ABL1	chr9	133651594	+	BCR	chr22	23633431	+
3UTR-intron	ENST00000377107	ENST00000375735		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
3UTR-intron	ENST00000377107	ENST00000334267		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
3UTR-intron	ENST00000377107	ENST00000398093		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
3UTR-intron	ENST00000218348	ENST00000375735		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
3UTR-intron	ENST00000218348	ENST00000334267		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
3UTR-intron	ENST00000218348	ENST00000398093		ChiTaRS3.1			CA312751	USP11	chrX	47107358	+	DYNC2H1	chr11	103336206	-
intron-3UTR	ENST00000374723	ENST00000398645		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374723	ENST00000529006		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374723	ENST00000526258		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374723	ENST00000308783		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374723	ENST00000530342		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374720	ENST00000398645		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374720	ENST00000529006		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374720	ENST00000526258		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374720	ENST00000308783		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374720	ENST00000530342		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374724	ENST00000398645		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374724	ENST00000529006		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000374724	ENST00000526258		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374724	ENST00000308783		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000374724	ENST00000530342		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000343170	ENST00000398645		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000343170	ENST00000529006		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000343170	ENST00000526258		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000343170	ENST00000308783		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000343170	ENST00000530342		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000607692	ENST00000398645		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000607692	ENST00000529006		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-3UTR	ENST00000607692	ENST00000526258		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000607692	ENST00000308783		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000607692	ENST00000530342		ChiTaRS3.1			BX504871	SLC44A1	chr9	108132461	+	KDM2A	chr11	67025031	+
intron-intron	ENST00000266604	ENST00000266604		ChiTaRS3.1			BM924511	LLPH	chr12	66531930	+	LLPH	chr12	66531874	-
intron-intron	ENST00000266604	ENST00000446587		ChiTaRS3.1			BM924511	LLPH	chr12	66531930	+	LLPH	chr12	66531874	-
intron-intron	ENST00000446587	ENST00000266604		ChiTaRS3.1			BM924511	LLPH	chr12	66531930	+	LLPH	chr12	66531874	-
intron-intron	ENST00000446587	ENST00000446587		ChiTaRS3.1			BM924511	LLPH	chr12	66531930	+	LLPH	chr12	66531874	-
intron-3UTR	ENST00000283629	ENST00000588161		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283629	ENST00000262633		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283629	ENST00000592202		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283629	ENST00000586618		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283629	ENST00000589559		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283629	ENST00000360475		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-intron	ENST00000283629	ENST00000589871		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000588161		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000262633		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000592202		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000586618		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000589559		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000447368	ENST00000360475		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-intron	ENST00000447368	ENST00000589871		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000588161		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000262633		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000592202		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000586618		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000589559		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000283628	ENST00000360475		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-intron	ENST00000283628	ENST00000589871		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000588161		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000262633		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000592202		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000586618		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000589559		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-3UTR	ENST00000486388	ENST00000360475		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-intron	ENST00000486388	ENST00000589871		ChiTaRS3.1			BX473841	UBP1	chr3	33471833	-	RBM42	chr19	36128537	+
intron-intron	ENST00000272395	ENST00000458578		ChiTaRS3.1			BM810591	TRIM43	chr2	96257962	+	UBE2L3	chr22	21976957	+
intron-3UTR	ENST00000272395	ENST00000342192		ChiTaRS3.1			BM810591	TRIM43	chr2	96257962	+	UBE2L3	chr22	21976957	+
intron-intron	ENST00000272395	ENST00000545681		ChiTaRS3.1			BM810591	TRIM43	chr2	96257962	+	UBE2L3	chr22	21976957	+
intron-intron	ENST00000229829	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000229829	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000229829	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000450833	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000450833	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000495532	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000495532	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000434335	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000434335	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000547284	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000547284	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000466497	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000466497	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000452598	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000452598	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000549881	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549881	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000468742	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000468742	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000438987	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000438987	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000549845	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000549845	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000489297	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000489297	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000383226	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000383226	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000550072	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000550072	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000477987	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000477987	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000426070	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426070	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000546375	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000546375	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000474779	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000474779	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000426685	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000426685	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000552368	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000552368	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000229829		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000450833		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000495532		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000434335		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-3UTR	ENST00000465107	ENST00000547284		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000466497		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000452598		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000549881		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000468742		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000438987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000549845		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000489297		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000383226		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000550072		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000477987		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000426070		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000546375		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000474779		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000426685		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000552368		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000465107	ENST00000465107		ChiTaRS3.1			BF926221	HLA-DOA	chr6	4453621	-	HLA-DOA	chr6	4419366	-
intron-intron	ENST00000344041	ENST00000256497		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000344041	ENST00000445686		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000475788	ENST00000256497		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000475788	ENST00000445686		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000405243	ENST00000256497		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000405243	ENST00000445686		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000401957	ENST00000256497		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000401957	ENST00000445686		ChiTaRS3.1			R93121	RAPGEF5	chr7	22352155	-	EDEM1	chr3	5241903	+
intron-intron	ENST00000396891	ENST00000309428		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000396891	ENST00000585894		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000396891	ENST00000543197		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000356950	ENST00000309428		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000356950	ENST00000585894		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000356950	ENST00000543197		ChiTaRS3.1			DA664421	HIST1H2BK	chr6	27114142	-	FAM134C	chr17	40761668	+
intron-intron	ENST00000541632	ENST00000373091		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000541632	ENST00000373093		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000541632	ENST00000462621		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000229002	ENST00000373091		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000229002	ENST00000373093		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000229002	ENST00000462621		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000538724	ENST00000373091		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000538724	ENST00000373093		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000538724	ENST00000462621		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
5CDS-intron	ENST00000536890	ENST00000373091		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
5CDS-intron	ENST00000536890	ENST00000373093		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
5CDS-intron	ENST00000536890	ENST00000462621		ChiTaRS3.1			BI046511	RERGL	chr12	18234273	-	GRIK3	chr1	37284682	-
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850201	DOT1L	chr19	2219945	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850201	DOT1L	chr19	2219945	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850201	DOT1L	chr19	2219945	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850201	DOT1L	chr19	2219945	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000498905	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000498905	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000498905	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000498905	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000498905	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000498905	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000527406	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000499953	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000525636	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000534671	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000498905		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000527406		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000499953		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000525636		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000534671		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000526617	ENST00000526617		ChiTaRS3.1			BE062271	SBF2-AS1	chr11	9784521	-	SBF2-AS1	chr11	9784429	+
intron-intron	ENST00000407690	ENST00000267485		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000407690	ENST00000334342		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000407431	ENST00000267485		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000407431	ENST00000334342		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000407148	ENST00000267485		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000407148	ENST00000334342		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000405938	ENST00000267485		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000405938	ENST00000334342		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000496523	ENST00000267485		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000496523	ENST00000334342		ChiTaRS3.1			AW379321	TFIP11	chr22	26904294	+	C14orf37	chr14	58736960	+
intron-intron	ENST00000545260	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545260	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000545693	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000350537	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000346874	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374789	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374790	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374794	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374788	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000466092	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374776	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000340077	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000544292	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374773	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000545260		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000545693		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000350537		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000346874		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374789		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374790		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374794		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374788		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000466092		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374776		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000340077		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000544292		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374773		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000374768	ENST00000374768		ChiTaRS3.1			CV355801	PARD3	chr10	34883866	-	PARD3	chr10	34884011	+
intron-intron	ENST00000490882	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000490882	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000490882	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000490882	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000429972	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000429972	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000429972	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000429972	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000295956	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000295956	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000295956	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000295956	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000358537	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000358537	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000358537	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000358537	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000357272	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000357272	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000357272	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000357272	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000348383	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000348383	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000348383	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000348383	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000493452	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000493452	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000493452	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000493452	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000419752	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000419752	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-3UTR	ENST00000419752	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000419752	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000484981	ENST00000490882		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000429972		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000295956		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000358537		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000357272		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000348383		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000484981	ENST00000493452		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-3UTR	ENST00000484981	ENST00000419752		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
intron-intron	ENST00000484981	ENST00000484981		ChiTaRS3.1			AW842251	FLNB	chr3	58157318	-	FLNB	chr3	58157605	+
3UTR-intron	ENST00000560079	ENST00000509603		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000560079	ENST00000319524		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000560079	ENST00000268763		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-3UTR	ENST00000560079	ENST00000398988		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000560079	ENST00000581975		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000560079	ENST00000582410		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-3UTR	ENST00000560079	ENST00000578981		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000299927	ENST00000509603		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000299927	ENST00000319524		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000299927	ENST00000268763		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-3UTR	ENST00000299927	ENST00000398988		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000299927	ENST00000581975		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-intron	ENST00000299927	ENST00000582410		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
3UTR-3UTR	ENST00000299927	ENST00000578981		ChiTaRS3.1			BI053011	ZNF592	chr15	85345866	+	KSR1	chr17	25950831	+
In-frame	ENST00000392185	ENST00000392185		ChiTaRS3.1			CN263471	SNX9	chr6	158323014	-	SNX9	chr6	158327179	+
intron-intron	ENST00000338316	ENST00000327532		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000338316	ENST00000488595		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000338316	ENST00000469243		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000537121	ENST00000327532		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000537121	ENST00000488595		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000537121	ENST00000469243		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000513693	ENST00000327532		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000513693	ENST00000488595		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
intron-intron	ENST00000513693	ENST00000469243		ChiTaRS3.1			BG338501	ADCY2	chr1	152004981	-	DZIP1L	chr3	137813181	+
3UTR-3CDS	ENST00000373610	ENST00000373610		ChiTaRS3.1			BU194071	TXLNA	chr1	32663412	+	TXLNA	chr1	32646087	+
3UTR-3CDS	ENST00000373610	ENST00000373609		ChiTaRS3.1			BU194071	TXLNA	chr1	32663412	+	TXLNA	chr1	32646087	+
3UTR-3CDS	ENST00000373609	ENST00000373610		ChiTaRS3.1			BU194071	TXLNA	chr1	32663412	+	TXLNA	chr1	32646087	+
3UTR-3CDS	ENST00000373609	ENST00000373609		ChiTaRS3.1			BU194071	TXLNA	chr1	32663412	+	TXLNA	chr1	32646087	+
5CDS-intron	ENST00000504734	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000504734	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000504734	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000504734	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000504734	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000504734	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000415618	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000415618	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000415618	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000415618	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000415618	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000415618	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000452673	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000452673	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000452673	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000452673	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000452673	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000452673	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000247461	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000247461	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000247461	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000247461	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000247461	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000247461	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000512607	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000512607	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000512607	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-3UTR	ENST00000512607	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000512607	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
5CDS-intron	ENST00000512607	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-intron	ENST00000503126	ENST00000504734		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-intron	ENST00000503126	ENST00000415618		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-3UTR	ENST00000503126	ENST00000452673		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-3UTR	ENST00000503126	ENST00000247461		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-intron	ENST00000503126	ENST00000512607		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
3UTR-intron	ENST00000503126	ENST00000503126		ChiTaRS3.1			CB856751	CANX	chr5	179143186	-	CANX	chr5	179156422	-
intron-3CDS	ENST00000277198	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000277198	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000297979	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000297979	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000375315	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000375315	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000395357	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000395357	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000425634	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000425634	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000433691	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000433691	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-3CDS	ENST00000473778	ENST00000543155		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000542150		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000229251		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000539735		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000538410		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000534947		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000473778	ENST00000534877		ChiTaRS3.1			AA210971	C9orf3	chr9	97795471	-	COPS7A	chr12	6837092	+
intron-intron	ENST00000372447	ENST00000370951		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000405432		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370950		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000454435		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000436161		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000484162		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370949		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370951		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000405432		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370950		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000454435		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000436161		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000484162		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370949		ChiTaRS3.1			AA934021	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-3UTR	ENST00000599539	ENST00000227507		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-intron	ENST00000599539	ENST00000536559		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-3UTR	ENST00000339471	ENST00000227507		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-intron	ENST00000339471	ENST00000536559		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-3UTR	ENST00000251453	ENST00000227507		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-intron	ENST00000251453	ENST00000536559		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-3UTR	ENST00000601655	ENST00000227507		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-intron	ENST00000601655	ENST00000536559		ChiTaRS3.1			BU620241	RPS16	chr19	39924320	+	CCND1	chr11	69468566	-
intron-5UTR	ENST00000435706	ENST00000341199		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000435706	ENST00000430704		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000435706	ENST00000443967		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000435706	ENST00000332772		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000435706	ENST00000429602		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000435706	ENST00000503595		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000264331	ENST00000341199		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000264331	ENST00000430704		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000264331	ENST00000443967		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000264331	ENST00000332772		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000264331	ENST00000429602		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000264331	ENST00000503595		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000542520	ENST00000341199		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000542520	ENST00000430704		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000542520	ENST00000443967		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000542520	ENST00000332772		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000542520	ENST00000429602		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000542520	ENST00000503595		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000540199	ENST00000341199		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000540199	ENST00000430704		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000540199	ENST00000443967		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000540199	ENST00000332772		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000540199	ENST00000429602		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000540199	ENST00000503595		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000475717	ENST00000341199		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000475717	ENST00000430704		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000475717	ENST00000443967		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000475717	ENST00000332772		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-5UTR	ENST00000475717	ENST00000429602		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000475717	ENST00000503595		ChiTaRS3.1			BC037411	TOP2B	chr3	25706026	-	SIMC1	chr5	175665471	+
intron-intron	ENST00000532855	ENST00000515518		ChiTaRS3.1			BF989261	MMP12	chr11	102733719	-	TMEM232	chr5	110036335	-
intron-intron	ENST00000532855	ENST00000429839		ChiTaRS3.1			BF989261	MMP12	chr11	102733719	-	TMEM232	chr5	110036335	-
intron-intron	ENST00000532855	ENST00000455884		ChiTaRS3.1			BF989261	MMP12	chr11	102733719	-	TMEM232	chr5	110036335	-
intron-intron	ENST00000444376	ENST00000261406		ChiTaRS3.1			AA367421	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000444376	ENST00000546220		ChiTaRS3.1			AA367421	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000283179	ENST00000261406		ChiTaRS3.1			AA367421	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000283179	ENST00000546220		ChiTaRS3.1			AA367421	HNRNPU	chr1	245019348	+	EMG1	chr12	7086626	-
intron-intron	ENST00000526995	ENST00000526995		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000526995	ENST00000348124		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000526995	ENST00000529150		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000348124	ENST00000526995		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000348124	ENST00000348124		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000348124	ENST00000529150		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000529150	ENST00000526995		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000529150	ENST00000348124		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000529150	ENST00000529150		ChiTaRS3.1			AW022791	TRAF6	chr11	36505549	+	TRAF6	chr11	36505467	-
intron-intron	ENST00000394480	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000394480	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000394480	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000557856	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000557856	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000357724	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000357724	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000355254	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000355254	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000360948	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000360948	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000542733	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000542733	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000558676	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558676	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000317501	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000317501	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000558306	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000558306	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000394480		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000557856		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000357724		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000355254		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000360948		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000542733		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000558676		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000540489	ENST00000317501		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000558306		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-intron	ENST00000540489	ENST00000540489		ChiTaRS3.1			AL134171	NTRK3	chr15	88521948	+	NTRK3	chr15	88521840	-
intron-3UTR	ENST00000446828	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000424227	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000443863	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000535426	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000265026	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000448876	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000454237	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-3UTR	ENST00000438798	ENST00000534336		ChiTaRS3.1			AI248811	MAP3K13	chr3	185083294	-	MALAT1	chr11	65268106	-
intron-intron	ENST00000483485	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000483485	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000377759	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000377759	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000377768	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000377768	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000606557	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000606557	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000606602	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000606602	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000481323	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000481323	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000486039	ENST00000520044		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000486039	ENST00000519289		ChiTaRS3.1			AW362291	SNX5	chr20	17936707	+	C8orf44-SGK3	chr8	67608014	-
intron-intron	ENST00000216121	ENST00000225964		ChiTaRS3.1			AW664321	NIPSNAP1	chr22	29951867	+	COL1A1	chr17	48265236	+
intron-intron	ENST00000494966	ENST00000225964		ChiTaRS3.1			AW664321	NIPSNAP1	chr22	29951867	+	COL1A1	chr17	48265236	+
Frame-shit	ENST00000356239	ENST00000380050		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000356239	ENST00000265741		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000356239	ENST00000406263		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000356239	ENST00000436577		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
5CDS-intron	ENST00000356239	ENST00000496279		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000358100	ENST00000380050		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000358100	ENST00000265741		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000358100	ENST00000406263		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000358100	ENST00000436577		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
5CDS-intron	ENST00000358100	ENST00000496279		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000359028	ENST00000380050		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000359028	ENST00000265741		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000359028	ENST00000406263		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000359028	ENST00000436577		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
5CDS-intron	ENST00000359028	ENST00000496279		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000394564	ENST00000380050		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000394564	ENST00000265741		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000394564	ENST00000406263		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
Frame-shit	ENST00000394564	ENST00000436577		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
5CDS-intron	ENST00000394564	ENST00000496279		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-3CDS	ENST00000491695	ENST00000380050		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-3CDS	ENST00000491695	ENST00000265741		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-3CDS	ENST00000491695	ENST00000406263		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-3CDS	ENST00000491695	ENST00000436577		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-intron	ENST00000491695	ENST00000496279		ChiTaRS3.1			DA807731	AKAP9	chr7	91570462	+	CDK14	chr7	90741855	+
intron-intron	ENST00000302279	ENST00000302279		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000342116		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000524546		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000302279	ENST00000529687		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000302279		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000342116		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000524546		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000342116	ENST00000529687		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000302279		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000342116		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000524546		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000524546	ENST00000529687		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000302279		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000342116		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000524546		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000529687	ENST00000529687		ChiTaRS3.1			CA867831	FNTA	chr8	42937978	+	FNTA	chr8	42936921	+
intron-intron	ENST00000310380	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000310380	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000310380	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000310380	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000310380	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000437101	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000437101	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000437101	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000437101	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000437101	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000429994	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000429994	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000429994	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000429994	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000429994	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000355729	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000355729	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000355729	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000355729	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000355729	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000460582	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000460582	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000460582	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000460582	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000460582	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000356740	ENST00000595437		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000356740	ENST00000376586		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000356740	ENST00000319562		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000356740	ENST00000376581		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-intron	ENST00000356740	ENST00000593990		ChiTaRS3.1			AK024181	XXYLT1	chr3	194927613	-	FARP1	chr13	98879492	+
intron-3UTR	ENST00000311148	ENST00000228928		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000311148	ENST00000551007		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000311148	ENST00000548514		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000311148	ENST00000546638		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-3UTR	ENST00000557556	ENST00000228928		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000557556	ENST00000551007		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000557556	ENST00000548514		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000557556	ENST00000546638		ChiTaRS3.1			BM915691	ACOT1	chr14	74036258	+	OAS3	chr12	113410085	+
intron-intron	ENST00000448637	ENST00000291386		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000448637	ENST00000359060		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000312675	ENST00000291386		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000312675	ENST00000359060		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000543006	ENST00000291386		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000543006	ENST00000359060		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000471917	ENST00000291386		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
intron-intron	ENST00000471917	ENST00000359060		ChiTaRS3.1			BG011761	LPP	chr3	188064351	+	SSU72	chr1	1491547	-
In-frame	ENST00000396373	ENST00000403263		ChiTaRS3.1			JF736506	ETV6	chr12	12022904	+	INO80D	chr2	206870260	-
intron-3CDS	ENST00000544715	ENST00000403263		ChiTaRS3.1			JF736506	ETV6	chr12	12022904	+	INO80D	chr2	206870260	-
intron-intron	ENST00000367718	ENST00000451940		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000456104		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000433530		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000447424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000433920		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000446751		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000420424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000413722		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000417860		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000413961		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000458739		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000367718	ENST00000366446		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000451940		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000456104		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000433530		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000447424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000433920		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000446751		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000420424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000413722		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000417860		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000413961		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000458739		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000281834	ENST00000366446		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000451940		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000456104		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000433530		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000447424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000433920		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000446751		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000420424		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000413722		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000417860		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000413961		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000458739		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
intron-intron	ENST00000488053	ENST00000366446		ChiTaRS3.1			AK056011	TNFSF4	chr1	173157483	-	NUTM2A-AS1	chr10	89002769	-
3UTR-intron	ENST00000503362	ENST00000546057		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
3UTR-intron	ENST00000503362	ENST00000377162		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
3UTR-intron	ENST00000503362	ENST00000328963		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
3UTR-intron	ENST00000503362	ENST00000535250		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
3UTR-intron	ENST00000503362	ENST00000443520		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
3UTR-intron	ENST00000503362	ENST00000541446		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000546057		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000377162		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000328963		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000535250		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000443520		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000507001	ENST00000541446		ChiTaRS3.1			AI332621	SPCS3	chr4	177252983	-	P2RX7	chr12	121624320	-
intron-intron	ENST00000515059	ENST00000307301		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000515059	ENST00000352957		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000440890	ENST00000307301		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000440890	ENST00000352957		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000264568	ENST00000307301		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000264568	ENST00000352957		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000394931	ENST00000307301		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000394931	ENST00000352957		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000502683	ENST00000307301		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000502683	ENST00000352957		ChiTaRS3.1			BG990101	BMPR1B	chr4	95958790	+	MRPL39	chr21	26961053	-
intron-intron	ENST00000355653	ENST00000546500		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000355653	ENST00000340913		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000355653	ENST00000330752		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000355653	ENST00000547276		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000355653	ENST00000551803		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000587173	ENST00000546500		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000587173	ENST00000340913		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000587173	ENST00000330752		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000587173	ENST00000547276		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000587173	ENST00000551803		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000420567	ENST00000546500		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000420567	ENST00000340913		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000420567	ENST00000330752		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000420567	ENST00000547276		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000420567	ENST00000551803		ChiTaRS3.1			AI339411	VAT1	chr17	41166905	+	HNRNPA1	chr12	54676659	-
intron-intron	ENST00000379051	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379051	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379033	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000298428	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000495368	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000304267	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379020	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000379051		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000379033		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000298428		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000495368		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000304267		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000379020		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000379017	ENST00000379017		ChiTaRS3.1			BE618201	SEC61A2	chr10	12208431	+	SEC61A2	chr10	12208283	-
intron-intron	ENST00000216014	ENST00000478513		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000341795		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000317371		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000415132		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000544814		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000478513		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000341795		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000317371		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000415132		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000544814		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000478513		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000341795		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000317371		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000415132		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000544814		ChiTaRS3.1			AA922671	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
3UTR-5UTR	ENST00000262067	ENST00000379568		ChiTaRS3.1			AK000631	TSPAN13	chr7	16823295	+	PAK1IP1	chr6	10695190	+
intron-5UTR	ENST00000466195	ENST00000379568		ChiTaRS3.1			AK000631	TSPAN13	chr7	16823295	+	PAK1IP1	chr6	10695190	+
intron-intron	ENST00000322349	ENST00000344663		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000322349	ENST00000591806		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000322349	ENST00000311401		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000322349	ENST00000415183		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000322349	ENST00000591453		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000547833	ENST00000344663		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000547833	ENST00000591806		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000547833	ENST00000311401		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000547833	ENST00000415183		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-intron	ENST00000547833	ENST00000591453		ChiTaRS3.1			AA278831	EEA1	chr12	93228952	-	MUM1	chr19	1376411	+
intron-3UTR	ENST00000261192	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000261192	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000261192	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000261192	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000261192	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000261192	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000538118	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000538118	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000538118	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000538118	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000538118	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000538118	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000342945	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000342945	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000342945	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000342945	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000342945	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000342945	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539282	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539282	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539282	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539282	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539282	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539282	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539780	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539780	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000539780	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539780	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539780	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000539780	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000544418	ENST00000261192		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000544418	ENST00000538118		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-3UTR	ENST00000544418	ENST00000342945		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000544418	ENST00000539282		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000544418	ENST00000539780		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000544418	ENST00000544418		ChiTaRS3.1			AA743391	BCAT1	chr12	24967834	+	BCAT1	chr12	24969053	-
intron-intron	ENST00000254998	ENST00000301923		ChiTaRS3.1			BX492251	NXT1	chr20	23332278	+	TNRC6B	chr22	40447432	-
intron-intron	ENST00000254998	ENST00000402203		ChiTaRS3.1			BX492251	NXT1	chr20	23332278	+	TNRC6B	chr22	40447432	-
intron-intron	ENST00000254998	ENST00000454349		ChiTaRS3.1			BX492251	NXT1	chr20	23332278	+	TNRC6B	chr22	40447432	-
intron-intron	ENST00000254998	ENST00000335727		ChiTaRS3.1			BX492251	NXT1	chr20	23332278	+	TNRC6B	chr22	40447432	-
intron-intron	ENST00000254998	ENST00000497559		ChiTaRS3.1			BX492251	NXT1	chr20	23332278	+	TNRC6B	chr22	40447432	-
Frame-shit	ENST00000569840	ENST00000597229		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
In-frame	ENST00000569840	ENST00000394341		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
Frame-shit	ENST00000301618	ENST00000597229		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
In-frame	ENST00000301618	ENST00000394341		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
intron-3CDS	ENST00000565675	ENST00000597229		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
intron-3CDS	ENST00000565675	ENST00000394341		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
3UTR-3CDS	ENST00000374998	ENST00000597229		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
3UTR-3CDS	ENST00000374998	ENST00000394341		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
Frame-shit	ENST00000428789	ENST00000597229		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
In-frame	ENST00000428789	ENST00000394341		ChiTaRS3.1			AK057861	MGAT5B	chr17	74902163	+	ZNF358	chr19	7585435	+
5CDS-intron	ENST00000389462	ENST00000257209		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000445677		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000590592		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000359247		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000591635		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000592128		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000389462	ENST00000587493		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000257209		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000445677		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000590592		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000359247		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000591635		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000592128		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
5CDS-intron	ENST00000309083	ENST00000587493		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000257209		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000445677		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000590592		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000359247		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000591635		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000592128		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
3UTR-intron	ENST00000538057	ENST00000587493		ChiTaRS3.1			BF091881	PTMS	chr12	6879138	-	FHOD3	chr18	34232499	+
intron-3UTR	ENST00000330909	ENST00000344120		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000330909	ENST00000434127		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000330909	ENST00000503582		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-3UTR	ENST00000402939	ENST00000344120		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000402939	ENST00000434127		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000402939	ENST00000503582		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-3UTR	ENST00000483466	ENST00000344120		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000483466	ENST00000434127		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000483466	ENST00000503582		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-3UTR	ENST00000497477	ENST00000344120		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000497477	ENST00000434127		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000497477	ENST00000503582		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-3UTR	ENST00000470990	ENST00000344120		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000470990	ENST00000434127		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000470990	ENST00000503582		ChiTaRS3.1			BF990231	MAGI1	chr3	65718046	+	SPRY4	chr5	141690881	-
intron-intron	ENST00000463441	ENST00000427191		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000463441	ENST00000436978		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000463441	ENST00000502971		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000463441	ENST00000411767		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000463441	ENST00000316707		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000463441	ENST00000511467		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000427191		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000436978		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000502971		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000411767		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000316707		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000323078	ENST00000511467		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000427191		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000436978		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000502971		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000411767		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000316707		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
3UTR-intron	ENST00000359623	ENST00000511467		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000427191		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000436978		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000502971		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000411767		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000316707		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000493307	ENST00000511467		ChiTaRS3.1			BU676031	LRRC61	chr7	150035158	-	PTPN13	chr4	87612505	+
intron-intron	ENST00000216014	ENST00000478513		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000341795		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000317371		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000415132		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000216014	ENST00000544814		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000478513		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000341795		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000317371		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000415132		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000409006	ENST00000544814		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000478513		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000341795		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000317371		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000415132		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-intron	ENST00000471268	ENST00000544814		ChiTaRS3.1			AI989911	KDELR3	chr22	38879605	+	SSUH2	chr3	8775110	-
intron-3CDS	ENST00000283632	ENST00000453386		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-3CDS	ENST00000283632	ENST00000382191		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-intron	ENST00000283632	ENST00000471134		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-intron	ENST00000283632	ENST00000342294		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-3CDS	ENST00000472843	ENST00000453386		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-3CDS	ENST00000472843	ENST00000382191		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-intron	ENST00000472843	ENST00000471134		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-intron	ENST00000472843	ENST00000342294		ChiTaRS3.1			BE767041	RMND5A	chr2	87205027	-	TRA2B	chr3	185641620	+
intron-intron	ENST00000263666	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000263666	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466780	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000308537	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000462146	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000535920	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000479530	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000263666		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000466780		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000308537		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000462146		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000535920		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000479530		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-intron	ENST00000466348	ENST00000466348		ChiTaRS3.1			AW841091	PDZRN3	chr3	73624420	-	PDZRN3	chr3	73624508	+
intron-3CDS	ENST00000323084	ENST00000323084		ChiTaRS3.1			AJ003551	TSPEAR	chr21	45929146	-	TSPEAR	chr21	45929262	+
intron-3CDS	ENST00000323084	ENST00000397916		ChiTaRS3.1			AJ003551	TSPEAR	chr21	45929146	-	TSPEAR	chr21	45929262	+
intron-3CDS	ENST00000397916	ENST00000323084		ChiTaRS3.1			AJ003551	TSPEAR	chr21	45929146	-	TSPEAR	chr21	45929262	+
intron-3CDS	ENST00000397916	ENST00000397916		ChiTaRS3.1			AJ003551	TSPEAR	chr21	45929146	-	TSPEAR	chr21	45929262	+
Frame-shit	ENST00000326648	ENST00000326648		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
5CDS-intron	ENST00000326648	ENST00000416172		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
5CDS-3UTR	ENST00000326648	ENST00000559364		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
Frame-shit	ENST00000416172	ENST00000326648		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
5CDS-intron	ENST00000416172	ENST00000416172		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
5CDS-3UTR	ENST00000416172	ENST00000559364		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
intron-3CDS	ENST00000559364	ENST00000326648		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
intron-intron	ENST00000559364	ENST00000416172		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
intron-3UTR	ENST00000559364	ENST00000559364		ChiTaRS3.1			BQ310511	ZNF609	chr15	64792357	+	ZNF609	chr15	64962604	-
3UTR-3UTR	ENST00000307145	ENST00000307145		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
3UTR-intron	ENST00000307145	ENST00000560473		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
3UTR-intron	ENST00000307145	ENST00000500533		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-3UTR	ENST00000560473	ENST00000307145		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-intron	ENST00000560473	ENST00000560473		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-intron	ENST00000560473	ENST00000500533		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-3UTR	ENST00000500533	ENST00000307145		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-intron	ENST00000500533	ENST00000560473		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-intron	ENST00000500533	ENST00000500533		ChiTaRS3.1			BF738021	KLF13	chr15	31669352	+	KLF13	chr15	31667802	+
intron-3CDS	ENST00000348405	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000348405	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000348405	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000348405	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000348405	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000348405	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000513858	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000513858	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000513858	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000513858	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000513858	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000513858	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000395310	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000395310	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000395310	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000395310	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000395310	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000395310	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000443462	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000443462	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000443462	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000443462	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000443462	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000443462	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000509142	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000509142	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000509142	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000509142	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000509142	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000509142	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000326950	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000326950	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000326950	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000326950	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000326950	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000326950	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000432794	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000432794	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000432794	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000432794	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000432794	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000432794	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000311785	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000311785	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000311785	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000311785	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000311785	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000311785	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000448323	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000448323	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000448323	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000448323	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000448323	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000448323	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505472	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505472	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505472	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000505472	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000505472	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000505472	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000500777	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000500777	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000500777	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000500777	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000500777	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000500777	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508502	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508502	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508502	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000508502	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000508502	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000508502	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000355196	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000355196	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000355196	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000355196	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000355196	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000355196	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000264405	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000264405	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000264405	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000264405	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000264405	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000264405	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505984	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505984	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000505984	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000505984	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000505984	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000505984	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508479	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508479	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000508479	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000508479	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000508479	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000508479	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000436790	ENST00000295065		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000436790	ENST00000379383		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000436790	ENST00000404530		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000436790	ENST00000490459		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-5UTR	ENST00000436790	ENST00000426310		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-intron	ENST00000436790	ENST00000407893		ChiTaRS3.1			BF751621	SEC31A	chr4	83819174	-	MEMO1	chr2	32094983	+
intron-3CDS	ENST00000216190	ENST00000216190		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000216190	ENST00000478547		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000216190	ENST00000541106		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000216190	ENST00000405442		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-3CDS	ENST00000478547	ENST00000216190		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000478547	ENST00000478547		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000478547	ENST00000541106		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000478547	ENST00000405442		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-3CDS	ENST00000541106	ENST00000216190		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000541106	ENST00000478547		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000541106	ENST00000541106		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000541106	ENST00000405442		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-3CDS	ENST00000405442	ENST00000216190		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000405442	ENST00000478547		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000405442	ENST00000541106		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-intron	ENST00000405442	ENST00000405442		ChiTaRS3.1			CD688331	EIF3D	chr22	36907748	-	EIF3D	chr22	36922081	-
intron-3CDS	ENST00000238823	ENST00000344147		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000238823	ENST00000479629		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000238823	ENST00000373714		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000238823	ENST00000546109		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000238823	ENST00000422613		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-3CDS	ENST00000403368	ENST00000344147		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000403368	ENST00000479629		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000403368	ENST00000373714		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000403368	ENST00000546109		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000403368	ENST00000422613		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-3CDS	ENST00000441530	ENST00000344147		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000441530	ENST00000479629		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000441530	ENST00000373714		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000441530	ENST00000546109		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000441530	ENST00000422613		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-3CDS	ENST00000498340	ENST00000344147		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000498340	ENST00000479629		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000498340	ENST00000373714		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000498340	ENST00000546109		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-intron	ENST00000498340	ENST00000422613		ChiTaRS3.1			BQ776211	FAM98A	chr2	33809286	+	ZCCHC17	chr1	31837025	-
intron-3UTR	ENST00000262097	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000262097	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000262097	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000262097	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000262097	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000262097	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000381733	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000381733	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000381733	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000381733	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000381733	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000381733	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000417108	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000417108	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000417108	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000417108	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-intron	ENST00000417108	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-intron	ENST00000417108	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000520781	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000520781	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000520781	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-3UTR	ENST00000520781	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-intron	ENST00000520781	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
5CDS-intron	ENST00000520781	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000314146	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000314146	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000314146	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000314146	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000314146	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000314146	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000520051	ENST00000262097		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000520051	ENST00000381733		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000520051	ENST00000417108		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-3UTR	ENST00000520051	ENST00000520781		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000520051	ENST00000314146		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
intron-intron	ENST00000520051	ENST00000520051		ChiTaRS3.1			AA501801	ASAH1	chr8	17913963	-	ASAH1	chr8	17914076	+
In-frame	ENST00000360839	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
In-frame	ENST00000360839	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000360839	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000360839	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000360839	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000360839	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
In-frame	ENST00000297183	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
In-frame	ENST00000297183	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000297183	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000297183	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000297183	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
5CDS-intron	ENST00000297183	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000394723	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000394723	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394723	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394723	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394723	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394723	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000394722	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000394722	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394722	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394722	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394722	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394722	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000462121	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000462121	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000462121	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000462121	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000462121	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000462121	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000544120	ENST00000360839		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-3CDS	ENST00000544120	ENST00000297183		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000544120	ENST00000394723		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000544120	ENST00000394722		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000544120	ENST00000462121		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000544120	ENST00000544120		ChiTaRS3.1			CD642571	ANKHD1	chr5	139903776	+	ANKHD1	chr5	139864767	+
intron-intron	ENST00000394121	ENST00000394121		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000264637		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000584985		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000394121	ENST00000450525		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000394121	ENST00000546243		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000394121		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000264637		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000584985		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000264637	ENST00000450525		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000264637	ENST00000546243		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000394121		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000264637		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000584985		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000584985	ENST00000450525		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000584985	ENST00000546243		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000394121		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000264637		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000584985		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-5UTR	ENST00000450525	ENST00000450525		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
3UTR-intron	ENST00000450525	ENST00000546243		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000394121		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000264637		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000584985		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-5UTR	ENST00000546243	ENST00000450525		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000546243	ENST00000546243		ChiTaRS3.1			BC008851	THRA	chr17	38247665	+	THRA	chr17	38219260	+
intron-intron	ENST00000356495	ENST00000379179		ChiTaRS3.1			BE697361	PIGR	chr1	207110465	+	SERP2	chr13	44964630	+
intron-intron	ENST00000487208	ENST00000379179		ChiTaRS3.1			BE697361	PIGR	chr1	207110465	+	SERP2	chr13	44964630	+
Frame-shit	ENST00000382533	ENST00000382533		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
Frame-shit	ENST00000382533	ENST00000607003		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
5CDS-intron	ENST00000382533	ENST00000485646		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
Frame-shit	ENST00000607003	ENST00000382533		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
Frame-shit	ENST00000607003	ENST00000607003		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
5CDS-intron	ENST00000607003	ENST00000485646		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
intron-3CDS	ENST00000485646	ENST00000382533		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
intron-3CDS	ENST00000485646	ENST00000607003		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
intron-intron	ENST00000485646	ENST00000485646		ChiTaRS3.1			BM968611	SAP18	chr13	21721349	-	SAP18	chr13	21721053	+
intron-intron	ENST00000320585	ENST00000338682		ChiTaRS3.1			AA985061	CHORDC1	chr11	89933831	+	ANKRD34B	chr5	79864745	-
intron-intron	ENST00000529987	ENST00000338682		ChiTaRS3.1			AA985061	CHORDC1	chr11	89933831	+	ANKRD34B	chr5	79864745	-
intron-intron	ENST00000457199	ENST00000338682		ChiTaRS3.1			AA985061	CHORDC1	chr11	89933831	+	ANKRD34B	chr5	79864745	-
intron-intron	ENST00000529726	ENST00000338682		ChiTaRS3.1			AA985061	CHORDC1	chr11	89933831	+	ANKRD34B	chr5	79864745	-
intron-intron	ENST00000530765	ENST00000338682		ChiTaRS3.1			AA985061	CHORDC1	chr11	89933831	+	ANKRD34B	chr5	79864745	-
5CDS-3UTR	ENST00000357849	ENST00000469172		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000265866		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000441000		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000354695		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000469172		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000265866		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000441000		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000354695		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000469172		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000265866		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000441000		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000354695		ChiTaRS3.1			BE176861	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-intron	ENST00000295897	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000295897	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000295897	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000295897	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000295897	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000295897	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000415165	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000503124	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000509063	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
5CDS-intron	ENST00000401494	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000395996		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000358544		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000357162		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000355155		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000441350		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
3UTR-intron	ENST00000505649	ENST00000521932		ChiTaRS3.1			W86731	ALB	chr4	74279288	+	VPS13B	chr8	100222381	+
intron-intron	ENST00000525141	ENST00000400128		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000400131		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000400135		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000400127		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000338326		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000299295		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000525141	ENST00000543733		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000400128		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000400131		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000400135		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000400127		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000338326		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000299295		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000298966	ENST00000543733		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000400128		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000400131		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000400135		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000400127		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000338326		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000299295		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000527149	ENST00000543733		ChiTaRS3.1			AW511581	SMCO4	chr11	93211926	+	CHODL	chr21	19437070	+
intron-intron	ENST00000456731	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000456731	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000456731	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000456731	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000456731	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000456731	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000367537	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000508461	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000347615	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507469	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000515829	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000443950		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000544000		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000357065		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000356053		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000337970		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-intron	ENST00000507406	ENST00000498176		ChiTaRS3.1			BF872191	SMG7	chr1	183457369	-	HNRNPF	chr10	43885934	+
intron-3CDS	ENST00000317635	ENST00000040738		ChiTaRS3.1			DA672851	TMEM11	chr17	21117764	+	BOD1L1	chr4	13584361	-
intron-3CDS	ENST00000584432	ENST00000040738		ChiTaRS3.1			DA672851	TMEM11	chr17	21117764	+	BOD1L1	chr4	13584361	-
intron-intron	ENST00000296695	ENST00000296695		ChiTaRS3.1			D82311	SPINK1	chr5	147210841	+	SPINK1	chr5	147210812	-
intron-intron	ENST00000296695	ENST00000510027		ChiTaRS3.1			D82311	SPINK1	chr5	147210841	+	SPINK1	chr5	147210812	-
intron-intron	ENST00000510027	ENST00000296695		ChiTaRS3.1			D82311	SPINK1	chr5	147210841	+	SPINK1	chr5	147210812	-
intron-intron	ENST00000510027	ENST00000510027		ChiTaRS3.1			D82311	SPINK1	chr5	147210841	+	SPINK1	chr5	147210812	-
5UTR-5UTR	ENST00000448150	ENST00000448150		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000448150	ENST00000367649		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000448150	ENST00000465723		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000448150	ENST00000462775		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000367649	ENST00000448150		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-5UTR	ENST00000367649	ENST00000367649		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000367649	ENST00000465723		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
5UTR-intron	ENST00000367649	ENST00000462775		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000465723	ENST00000448150		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000465723	ENST00000367649		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000465723	ENST00000465723		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000465723	ENST00000462775		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000462775	ENST00000448150		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-5UTR	ENST00000462775	ENST00000367649		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000462775	ENST00000465723		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-intron	ENST00000462775	ENST00000462775		ChiTaRS3.1			BG826421	RASAL2	chr1	178063305	-	RASAL2	chr1	178063657	+
intron-3UTR	ENST00000374975	ENST00000374975		ChiTaRS3.1			BU676711	HLA-DRB5	chr6	32485269	+	HLA-DRB5	chr6	32485413	-
intron-3CDS	ENST00000306749	ENST00000393561		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000306749	ENST00000222399		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000306749	ENST00000393560		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-intron	ENST00000306749	ENST00000474380		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000393561		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000222399		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000393560		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-intron	ENST00000579758	ENST00000474380		ChiTaRS3.1			BE818191	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-intron	ENST00000488324	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000488324	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000488324	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000488324	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000399199	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000399199	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000399199	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000274853	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000274853	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000274853	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000498031	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000498031	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000498031	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000444206	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000444206	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000444206	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438815	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000438815	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000438815	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000552716	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000552716	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000552716	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000491628	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000491628	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000491628	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435929	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000435929	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000435929	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000412189	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000412189	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000412189	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000548255	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000548255	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000548255	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000493833	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000493833	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000493833	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000438945	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000438945	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000438945	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000455935	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000455935	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000455935	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551049	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000551049	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000551049	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000472334	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000472334	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000472334	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000451544	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000451544	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000451544	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000437121	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000437121	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000437121	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551034	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000551034	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000551034	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000465704	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000465704	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000465704	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000383573	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000383573	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000383573	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000400554	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000400554	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000400554	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000550073	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000550073	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000550073	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000492746	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000492746	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000492746	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000449705	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000449705	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000449705	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000443517	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000443517	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000443517	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000551784	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000551784	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000551784	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000487859	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000487859	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000487859	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000488324		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000399199		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000274853		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000498031		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000444206		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000438815		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000552716		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000491628		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000435929		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000412189		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000548255		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000493833		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000438945		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000455935		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000551049		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000472334		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000451544		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000437121		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000551034		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000465704		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000383573		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000400554		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000550073		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000492746		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000449705		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000443517		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-intron	ENST00000435006	ENST00000551784		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-5UTR	ENST00000435006	ENST00000487859		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
intron-3UTR	ENST00000435006	ENST00000435006		ChiTaRS3.1			BM983871	PPP1R18	chr6	2156350	+	PPP1R18	chr6	1976955	-
3UTR-3CDS	ENST00000348547	ENST00000348547		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000348547	ENST00000357394		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000348547	ENST00000279052		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000348547	ENST00000447986		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-intron	ENST00000348547	ENST00000482338		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000357394	ENST00000348547		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000357394	ENST00000357394		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000357394	ENST00000279052		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000357394	ENST00000447986		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-intron	ENST00000357394	ENST00000482338		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000279052	ENST00000348547		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000279052	ENST00000357394		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000279052	ENST00000279052		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000279052	ENST00000447986		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-intron	ENST00000279052	ENST00000482338		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000447986	ENST00000348547		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000447986	ENST00000357394		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000447986	ENST00000279052		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-3CDS	ENST00000447986	ENST00000447986		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-intron	ENST00000447986	ENST00000482338		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
intron-3CDS	ENST00000482338	ENST00000348547		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
intron-3CDS	ENST00000482338	ENST00000357394		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
intron-3CDS	ENST00000482338	ENST00000279052		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
intron-3CDS	ENST00000482338	ENST00000447986		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
intron-intron	ENST00000482338	ENST00000482338		ChiTaRS3.1			BF512631	ERGIC3	chr20	34145312	-	ERGIC3	chr20	34145232	+
3UTR-intron	ENST00000295754	ENST00000316738		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000555872		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000556609		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000267544		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000550103		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000538485		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000295754	ENST00000556005		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000316738		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000555872		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000556609		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000267544		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000550103		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000538485		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
3UTR-intron	ENST00000359013	ENST00000556005		ChiTaRS3.1			BG991791	TGFBR2	chr3	30734739	-	EFCAB11	chr14	90341514	-
intron-3UTR	ENST00000383737	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000383737	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000383737	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000383737	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000383737	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000395734	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000395734	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000395734	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000395734	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000395734	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000426837	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000426837	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000426837	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000426837	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000426837	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000360240	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000360240	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000360240	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000360240	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000360240	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000439356	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000439356	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000439356	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000439356	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000439356	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000264724	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000264724	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000264724	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000264724	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000264724	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000420772	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000420772	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000420772	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000420772	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000420772	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000441748	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000441748	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000441748	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000441748	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000441748	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000462206	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000462206	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000462206	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000462206	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000462206	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000434267	ENST00000383737		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000395734		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000434267	ENST00000426837		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000434267	ENST00000360240		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000439356		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-3UTR	ENST00000434267	ENST00000264724		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000420772		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000441748		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000462206		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-intron	ENST00000434267	ENST00000434267		ChiTaRS3.1			BG325391	MAP4	chr3	47894694	+	MAP4	chr3	47894457	-
intron-5UTR	ENST00000407936	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000407936	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000407936	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000405557	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000405557	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000405557	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000442738	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000442738	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000442738	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000460648	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000460648	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000460648	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000488684	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000488684	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000488684	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000606538	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000606538	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000606538	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000470701	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000470701	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000470701	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000608713	ENST00000602226		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000608713	ENST00000262265		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-5UTR	ENST00000608713	ENST00000596049		ChiTaRS3.1			BF961261	POLR2F	chr22	38368835	+	PIH1D1	chr19	49949948	-
intron-3CDS	ENST00000279550	ENST00000406875		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-3CDS	ENST00000279550	ENST00000428878		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-intron	ENST00000279550	ENST00000342645		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-3CDS	ENST00000228251	ENST00000406875		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-3CDS	ENST00000228251	ENST00000428878		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-intron	ENST00000228251	ENST00000342645		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-3CDS	ENST00000546164	ENST00000406875		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-3CDS	ENST00000546164	ENST00000428878		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-intron	ENST00000546164	ENST00000342645		ChiTaRS3.1			BI046011	YBX3	chr12	10854617	+	HIPK2	chr7	139260004	+
intron-5UTR	ENST00000368732	ENST00000368732		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368732	ENST00000368733		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368732	ENST00000477801		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000368732		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000368733		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000477801		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000368732		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000368733		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000477801		ChiTaRS3.1			BU678791	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
3UTR-3CDS	ENST00000369317	ENST00000369317		ChiTaRS3.1			BF847181	TXNIP	chr1	145441360	+	TXNIP	chr1	145441037	-
3UTR-intron	ENST00000369317	ENST00000475171		ChiTaRS3.1			BF847181	TXNIP	chr1	145441360	+	TXNIP	chr1	145441037	-
3UTR-3CDS	ENST00000475171	ENST00000369317		ChiTaRS3.1			BF847181	TXNIP	chr1	145441360	+	TXNIP	chr1	145441037	-
3UTR-intron	ENST00000475171	ENST00000475171		ChiTaRS3.1			BF847181	TXNIP	chr1	145441360	+	TXNIP	chr1	145441037	-
intron-intron	ENST00000256646	ENST00000534312		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000256646	ENST00000395850		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000256646	ENST00000533403		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000256646	ENST00000351554		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000256646	ENST00000415002		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000256646	ENST00000445143		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000256646	ENST00000426650		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000256646	ENST00000437761		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000256646	ENST00000527577		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000256646	ENST00000528700		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000534312		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000602566	ENST00000395850		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000602566	ENST00000533403		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000602566	ENST00000351554		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000602566	ENST00000415002		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000445143		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000426650		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000437761		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000527577		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000602566	ENST00000528700		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000534312		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000493703	ENST00000395850		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000493703	ENST00000533403		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000493703	ENST00000351554		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-3UTR	ENST00000493703	ENST00000415002		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000445143		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000426650		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000437761		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000527577		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
intron-intron	ENST00000493703	ENST00000528700		ChiTaRS3.1			BP305371	NOTCH2	chr1	120454256	-	CD59	chr11	33731324	-
Frame-shit	ENST00000381232	ENST00000381232		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000381232	ENST00000555818		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000381232	ENST00000358550		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000381232	ENST00000537413		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
5CDS-3UTR	ENST00000381232	ENST00000554874		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000555818	ENST00000381232		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000555818	ENST00000555818		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000555818	ENST00000358550		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000555818	ENST00000537413		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
5CDS-3UTR	ENST00000555818	ENST00000554874		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000358550	ENST00000381232		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000358550	ENST00000555818		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000358550	ENST00000358550		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000358550	ENST00000537413		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
5CDS-3UTR	ENST00000358550	ENST00000554874		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000537413	ENST00000381232		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000537413	ENST00000555818		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000537413	ENST00000358550		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
Frame-shit	ENST00000537413	ENST00000537413		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
5CDS-3UTR	ENST00000537413	ENST00000554874		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
3UTR-3CDS	ENST00000554874	ENST00000381232		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
3UTR-3CDS	ENST00000554874	ENST00000555818		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
3UTR-3CDS	ENST00000554874	ENST00000358550		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
3UTR-3CDS	ENST00000554874	ENST00000537413		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
3UTR-3UTR	ENST00000554874	ENST00000554874		ChiTaRS3.1			CR936651	SIPA1L1	chr14	72191448	-	SIPA1L1	chr14	72190409	+
In-frame	ENST00000358026	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000358026	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000358026	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000344626	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000344626	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000429416	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000429416	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000541122	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000541122	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000589677	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000589677	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000444061	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000444061	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000590574	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000590574	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000413806	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000413806	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
In-frame	ENST00000450717	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
5CDS-intron	ENST00000450717	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000358026		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000344626		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000429416		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000541122		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000589677		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000444061		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000590574		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000413806		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-3CDS	ENST00000538456	ENST00000450717		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-intron	ENST00000538456	ENST00000538456		ChiTaRS3.1			BE255521	SMARCA4	chr19	11136108	-	SMARCA4	chr19	11136141	+
intron-intron	ENST00000381340	ENST00000381340		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000545902		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000242737		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000381340		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000545902		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000242737		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000381340		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000545902		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000242737		ChiTaRS3.1			AA526621	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
5CDS-intron	ENST00000290607	ENST00000337338		ChiTaRS3.1			BF370571	STARD9	chr15	42984346	+	LRRC8D	chr1	90351650	-
5CDS-intron	ENST00000290607	ENST00000394593		ChiTaRS3.1			BF370571	STARD9	chr15	42984346	+	LRRC8D	chr1	90351650	-
intron-intron	ENST00000321437	ENST00000375331		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000375333		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000463823		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000551718		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000425138		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000433397		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000490195		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000549310		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000426802		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000452688		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000460232		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000549916		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000444147		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000431383		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000465050		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000547578		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000383328		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000383327		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000469629		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000550656		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000424104		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000438256		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000321437	ENST00000493840		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000375331		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000375333		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000463823		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000551718		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000425138		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000433397		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000490195		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000549310		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000426802		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000452688		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000460232		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000549916		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000444147		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000431383		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000465050		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000547578		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000383328		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000383327		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000469629		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000550656		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000424104		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000438256		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000448330	ENST00000493840		ChiTaRS3.1			BI000121	RAB8B	chr15	63482542	+	STK19	chr6	3280096	-
intron-intron	ENST00000405271	ENST00000378609		ChiTaRS3.1			BF806121	EPCAM	chr2	47601569	+	GNB1	chr1	1718504	-
intron-intron	ENST00000405271	ENST00000472614		ChiTaRS3.1			BF806121	EPCAM	chr2	47601569	+	GNB1	chr1	1718504	-
intron-intron	ENST00000263735	ENST00000378609		ChiTaRS3.1			BF806121	EPCAM	chr2	47601569	+	GNB1	chr1	1718504	-
intron-intron	ENST00000263735	ENST00000472614		ChiTaRS3.1			BF806121	EPCAM	chr2	47601569	+	GNB1	chr1	1718504	-
3UTR-3UTR	ENST00000480740	ENST00000526148		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000480740	ENST00000525681		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000480740	ENST00000339995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000480740	ENST00000396525		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-intron	ENST00000480740	ENST00000525995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000471696	ENST00000526148		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000471696	ENST00000525681		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000471696	ENST00000339995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000471696	ENST00000396525		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-intron	ENST00000471696	ENST00000525995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000477889	ENST00000526148		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000477889	ENST00000525681		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000477889	ENST00000339995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000477889	ENST00000396525		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-intron	ENST00000477889	ENST00000525995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000485923	ENST00000526148		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000485923	ENST00000525681		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000485923	ENST00000339995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000485923	ENST00000396525		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-intron	ENST00000485923	ENST00000525995		ChiTaRS3.1			BE084601	SELT	chr3	150344949	+	EIF4G2	chr11	10818757	+
3UTR-3UTR	ENST00000464117	ENST00000464117		ChiTaRS3.1			BM921941	SHISA4	chr1	201859601	-	SHISA4	chr1	201860536	+
3UTR-3UTR	ENST00000464117	ENST00000362011		ChiTaRS3.1			BM921941	SHISA4	chr1	201859601	-	SHISA4	chr1	201860536	+
5CDS-3UTR	ENST00000362011	ENST00000464117		ChiTaRS3.1			BM921941	SHISA4	chr1	201859601	-	SHISA4	chr1	201860536	+
5CDS-3UTR	ENST00000362011	ENST00000362011		ChiTaRS3.1			BM921941	SHISA4	chr1	201859601	-	SHISA4	chr1	201860536	+
intron-intron	ENST00000344773	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000462484		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000334856		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000460843		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000371394		ChiTaRS3.1			BI467031	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000371227	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371227	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371249	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000306402	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000353505	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371246	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000347291	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000393949	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371247	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000607232	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371245	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000361941	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000277982	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000354106	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371239	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000371241	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371227		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371249		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000306402		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000353505		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371246		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000347291		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000393949		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371247		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000607232		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371245		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000361941		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000277982		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000354106		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371239		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000371241		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000474353	ENST00000474353		ChiTaRS3.1			AB020701	SORBS1	chr10	97114703	-	SORBS1	chr10	97131839	-
intron-intron	ENST00000376371	ENST00000303391		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376371	ENST00000453960		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376371	ENST00000407218		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376371	ENST00000460227		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376365	ENST00000303391		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376365	ENST00000453960		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376365	ENST00000407218		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376365	ENST00000460227		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376362	ENST00000303391		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376362	ENST00000453960		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376362	ENST00000407218		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000376362	ENST00000460227		ChiTaRS3.1			AF361491	GKAP1	chr9	86382697	+	MECP2	chrX	153321732	+
intron-intron	ENST00000276204	ENST00000534358		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276204	ENST00000389506		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276204	ENST00000354520		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276204	ENST00000420751		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276202	ENST00000534358		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276202	ENST00000389506		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276202	ENST00000354520		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000276202	ENST00000420751		ChiTaRS3.1			AY246172	DOCK11	chrX	117683446	-	KMT2A	chr11	118358291	+
intron-intron	ENST00000316292	ENST00000392476		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000430767		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000316292	ENST00000564509		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000585618		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000413679		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000436233		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000316292	ENST00000443798		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000591437		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000316292	ENST00000431431		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000491404	ENST00000392476		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000430767		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000491404	ENST00000564509		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000585618		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000413679		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000436233		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000491404	ENST00000443798		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000591437		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000491404	ENST00000431431		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000309268	ENST00000392476		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000430767		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000309268	ENST00000564509		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000585618		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000413679		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000436233		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000309268	ENST00000443798		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000591437		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000309268	ENST00000431431		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000331523	ENST00000392476		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000430767		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000331523	ENST00000564509		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000585618		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000413679		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000436233		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-intron	ENST00000331523	ENST00000443798		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000591437		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
intron-3UTR	ENST00000331523	ENST00000431431		ChiTaRS3.1			BF802691	EEF1A1	chr6	74228889	-	SEC14L1	chr17	75210153	-
In-frame	ENST00000444836	ENST00000444836		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
In-frame	ENST00000444836	ENST00000235329		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
5CDS-intron	ENST00000444836	ENST00000497302		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
In-frame	ENST00000235329	ENST00000444836		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
In-frame	ENST00000235329	ENST00000235329		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
5CDS-intron	ENST00000235329	ENST00000497302		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
intron-3CDS	ENST00000497302	ENST00000444836		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
intron-3CDS	ENST00000497302	ENST00000235329		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
intron-intron	ENST00000497302	ENST00000497302		ChiTaRS3.1			BF834721	MFN2	chr1	12071582	-	MFN2	chr1	12069686	+
intron-5UTR	ENST00000411780	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000411780	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000411780	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000411780	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000411780	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397137	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397137	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397137	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397137	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397137	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000373537	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000373537	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000373537	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000373537	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000373537	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000414542	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000414542	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000414542	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000414542	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000414542	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397135	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397135	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397135	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397135	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397135	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397134	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397134	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397134	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397134	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397134	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397131	ENST00000529631		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397131	ENST00000529191		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-5UTR	ENST00000397131	ENST00000273550		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397131	ENST00000526640		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
intron-intron	ENST00000397131	ENST00000532601		ChiTaRS3.1			BC001481	BLCAP	chr20	36146457	-	FTH1	chr11	61735089	-
3UTR-intron	ENST00000346916	ENST00000471231		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000346916	ENST00000338343		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000346916	ENST00000562319		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000346916	ENST00000380310		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000346916	ENST00000565690		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000545507	ENST00000471231		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000545507	ENST00000338343		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000545507	ENST00000562319		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000545507	ENST00000380310		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000545507	ENST00000565690		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000333511	ENST00000471231		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000333511	ENST00000338343		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000333511	ENST00000562319		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000333511	ENST00000380310		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000333511	ENST00000565690		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000353555	ENST00000471231		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000353555	ENST00000338343		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000353555	ENST00000562319		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000353555	ENST00000380310		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
3UTR-intron	ENST00000353555	ENST00000565690		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-intron	ENST00000574970	ENST00000471231		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-intron	ENST00000574970	ENST00000338343		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-intron	ENST00000574970	ENST00000562319		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-intron	ENST00000574970	ENST00000380310		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-intron	ENST00000574970	ENST00000565690		ChiTaRS3.1			BF762451	BSG	chr19	583428	+	FBXL19	chr16	30935819	+
intron-3UTR	ENST00000397821	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000397821	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000397821	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379716	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000379716	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379716	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379698	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000379698	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379698	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000541422	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000541422	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000541422	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379697	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000379697	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000379697	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000477102	ENST00000324306		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-intron	ENST00000477102	ENST00000426572		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000477102	ENST00000535170		ChiTaRS3.1			BQ321721	SH3KBP1	chrX	19599014	+	ZKSCAN1	chr7	99632844	+
intron-3UTR	ENST00000507668	ENST00000216264		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000507668	ENST00000541677		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000507668	ENST00000471929		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-3UTR	ENST00000512972	ENST00000216264		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000512972	ENST00000541677		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000512972	ENST00000471929		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-3UTR	ENST00000509193	ENST00000216264		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000509193	ENST00000541677		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000509193	ENST00000471929		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-3UTR	ENST00000512721	ENST00000216264		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000512721	ENST00000541677		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000512721	ENST00000471929		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-3UTR	ENST00000513907	ENST00000216264		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000513907	ENST00000541677		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000513907	ENST00000471929		ChiTaRS3.1			BF807731	SERINC5	chr5	79534327	+	CERK	chr22	47081132	-
intron-intron	ENST00000375360	ENST00000375360		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000375360	ENST00000288976		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000375360	ENST00000467049		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000288976	ENST00000375360		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000288976	ENST00000288976		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000288976	ENST00000467049		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000467049	ENST00000375360		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000467049	ENST00000288976		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000467049	ENST00000467049		ChiTaRS3.1			AW993491	PTPDC1	chr9	96845598	+	PTPDC1	chr9	96844474	+
intron-intron	ENST00000382952	ENST00000382952		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000382952	ENST00000290921		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000382952	ENST00000510568		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000382952	ENST00000515690		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000290921	ENST00000382952		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000290921	ENST00000290921		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000290921	ENST00000510568		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000290921	ENST00000515690		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000510568	ENST00000382952		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000510568	ENST00000290921		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000510568	ENST00000510568		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000510568	ENST00000515690		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000515690	ENST00000382952		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000515690	ENST00000290921		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000515690	ENST00000510568		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
intron-intron	ENST00000515690	ENST00000515690		ChiTaRS3.1			AW890211	CTBP1	chr4	1236541	-	CTBP1	chr4	1236941	-
Frame-shit	ENST00000322644	ENST00000322644		ChiTaRS3.1			BF514571	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000322644	ENST00000572844		ChiTaRS3.1			BF514571	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000572844	ENST00000322644		ChiTaRS3.1			BF514571	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000572844	ENST00000572844		ChiTaRS3.1			BF514571	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
3UTR-3UTR	ENST00000262225	ENST00000262225		ChiTaRS3.1			AA533651	TMED2	chr12	124081419	+	TMED2	chr12	124081353	-
3UTR-3UTR	ENST00000262225	ENST00000509052		ChiTaRS3.1			AA533651	TMED2	chr12	124081419	+	TMED2	chr12	124081353	-
3UTR-3UTR	ENST00000509052	ENST00000262225		ChiTaRS3.1			AA533651	TMED2	chr12	124081419	+	TMED2	chr12	124081353	-
3UTR-3UTR	ENST00000509052	ENST00000509052		ChiTaRS3.1			AA533651	TMED2	chr12	124081419	+	TMED2	chr12	124081353	-
intron-intron	ENST00000553974	ENST00000262134		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000553974	ENST00000565056		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000555474	ENST00000262134		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000555474	ENST00000565056		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000216442	ENST00000262134		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000216442	ENST00000565056		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000555431	ENST00000262134		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000555431	ENST00000565056		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000554236	ENST00000262134		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000554236	ENST00000565056		ChiTaRS3.1			AI333351	ATP6V1D	chr14	67804936	+	LPCAT2	chr16	55600814	-
intron-intron	ENST00000410053	ENST00000260356		ChiTaRS3.1			BG189851	CWC22	chr2	180864733	-	THBS1	chr15	39875888	-
intron-intron	ENST00000295749	ENST00000260356		ChiTaRS3.1			BG189851	CWC22	chr2	180864733	-	THBS1	chr15	39875888	-
intron-3UTR	ENST00000368346	ENST00000429711		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-3UTR	ENST00000368346	ENST00000396957		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000368346	ENST00000273223		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000368346	ENST00000435983		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000368346	ENST00000396953		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-3UTR	ENST00000392403	ENST00000429711		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-3UTR	ENST00000392403	ENST00000396957		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000392403	ENST00000273223		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000392403	ENST00000435983		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000392403	ENST00000396953		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-3UTR	ENST00000548830	ENST00000429711		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-3UTR	ENST00000548830	ENST00000396957		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000548830	ENST00000273223		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000548830	ENST00000435983		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000548830	ENST00000396953		ChiTaRS3.1			AA837061	ASH1L	chr1	155315156	+	RPL32	chr3	12877548	+
intron-intron	ENST00000359263	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000359263	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000358334	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371501	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371502	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371489	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000485212	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000513610		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000507288		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000274203		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000515803		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000427430		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000505695		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
intron-intron	ENST00000371488	ENST00000512061		ChiTaRS3.1			BE003191	MYOF	chr10	95113869	+	MYO10	chr5	16776325	+
3UTR-3UTR	ENST00000388825	ENST00000388825		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
3UTR-intron	ENST00000388825	ENST00000521722		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
3UTR-intron	ENST00000388825	ENST00000517973		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-3UTR	ENST00000521722	ENST00000388825		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-intron	ENST00000521722	ENST00000521722		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-intron	ENST00000521722	ENST00000517973		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-3UTR	ENST00000517973	ENST00000388825		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-intron	ENST00000517973	ENST00000521722		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
intron-intron	ENST00000517973	ENST00000517973		ChiTaRS3.1			BG896291	GPX3	chr5	150407947	-	GPX3	chr5	150408072	+
3UTR-3UTR	ENST00000217971	ENST00000217971		ChiTaRS3.1			BI497441	PGRMC1	chrX	118377497	-	PGRMC1	chrX	118377538	+
3UTR-3UTR	ENST00000217971	ENST00000535419		ChiTaRS3.1			BI497441	PGRMC1	chrX	118377497	-	PGRMC1	chrX	118377538	+
3UTR-3UTR	ENST00000535419	ENST00000217971		ChiTaRS3.1			BI497441	PGRMC1	chrX	118377497	-	PGRMC1	chrX	118377538	+
3UTR-3UTR	ENST00000535419	ENST00000535419		ChiTaRS3.1			BI497441	PGRMC1	chrX	118377497	-	PGRMC1	chrX	118377538	+
5CDS-intron	ENST00000301633	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000301633	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000301633	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000350051	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000350051	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000350051	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000374948	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000374948	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000374948	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000590449	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000590449	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000590449	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000592734	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000592734	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
5CDS-intron	ENST00000592734	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
intron-intron	ENST00000589892	ENST00000462832		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
intron-intron	ENST00000589892	ENST00000379579		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
intron-intron	ENST00000589892	ENST00000334056		ChiTaRS3.1			DB443041	BIRC5	chr17	76210826	+	SPDYA	chr2	29050056	+
intron-intron	ENST00000260327	ENST00000260327		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000260327	ENST00000396780		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000260327	ENST00000558966		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000260327	ENST00000558373		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000260327	ENST00000561189		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000396780	ENST00000260327		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000396780	ENST00000396780		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000396780	ENST00000558966		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000396780	ENST00000558373		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000396780	ENST00000561189		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558966	ENST00000260327		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558966	ENST00000396780		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558966	ENST00000558966		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558966	ENST00000558373		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558966	ENST00000561189		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558373	ENST00000260327		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558373	ENST00000396780		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558373	ENST00000558966		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558373	ENST00000558373		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000558373	ENST00000561189		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000561189	ENST00000260327		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000561189	ENST00000396780		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000561189	ENST00000558966		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000561189	ENST00000558373		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-intron	ENST00000561189	ENST00000561189		ChiTaRS3.1			CV315431	CTDSPL2	chr15	44801426	+	CTDSPL2	chr15	44801088	+
intron-3CDS	ENST00000287275	ENST00000287275		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000287275	ENST00000532258		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000287275	ENST00000533636		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000532258	ENST00000287275		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000532258	ENST00000532258		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000532258	ENST00000533636		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000533636	ENST00000287275		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000533636	ENST00000532258		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000533636	ENST00000533636		ChiTaRS3.1			CA311201	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
3UTR-intron	ENST00000462274	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
3UTR-intron	ENST00000462274	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
3UTR-intron	ENST00000462274	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
3UTR-intron	ENST00000462274	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
3UTR-intron	ENST00000462274	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000338785	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000338785	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000338785	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000338785	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000338785	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000451934	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000451934	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000451934	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000451934	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000451934	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000321219	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000321219	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000321219	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000321219	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000321219	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000339659	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000339659	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000339659	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000339659	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000339659	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398960	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398960	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398960	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398960	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398960	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398956	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398956	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398956	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398956	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
5CDS-intron	ENST00000398956	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
intron-intron	ENST00000455387	ENST00000426496		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
intron-intron	ENST00000455387	ENST00000392078		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
intron-intron	ENST00000455387	ENST00000476522		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
intron-intron	ENST00000455387	ENST00000367742		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
intron-intron	ENST00000455387	ENST00000338920		ChiTaRS3.1			BE717051	DYRK1A	chr21	38845017	+	PRRC2C	chr1	171559372	-
Frame-shit	ENST00000354185	ENST00000372677		ChiTaRS3.1			AW379411	DDX21	chr10	70742402	-	BEX2	chrX	102564533	-
In-frame	ENST00000354185	ENST00000536889		ChiTaRS3.1			AW379411	DDX21	chr10	70742402	-	BEX2	chrX	102564533	-
Frame-shit	ENST00000354185	ENST00000372674		ChiTaRS3.1			AW379411	DDX21	chr10	70742402	-	BEX2	chrX	102564533	-
intron-3CDS	ENST00000371191	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371191	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371191	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000407417	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000407417	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000407417	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000479364	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000479364	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000479364	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371189	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371189	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371189	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000403491	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000403491	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000403491	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371187	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371187	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371187	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000485903	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000485903	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000485903	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371185	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371185	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371185	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371184	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000371184	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000371184	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000357977	ENST00000521381		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-3CDS	ENST00000357977	ENST00000521657		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000517643		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000274335		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000396611		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000320694		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000336483		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
intron-intron	ENST00000357977	ENST00000523872		ChiTaRS3.1			BX648791	NFIA	chr1	61821979	+	PIK3R1	chr5	67593366	+
5UTR-3CDS	ENST00000526776	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000526776	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000526776	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000532287	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000532287	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000532287	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000534812	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000534812	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000534812	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000278200	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000278200	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000278200	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000533642	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000533642	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000533642	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000528161	ENST00000350638		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000528161	ENST00000379163		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
5UTR-3CDS	ENST00000528161	ENST00000395934		ChiTaRS3.1			BG433771	IMMP1L	chr11	31531064	-	ELP4	chr11	31541601	+
intron-intron	ENST00000280527	ENST00000344041		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000280527	ENST00000475788		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000280527	ENST00000405243		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000280527	ENST00000401957		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000473403	ENST00000344041		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000473403	ENST00000475788		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000473403	ENST00000405243		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-intron	ENST00000473403	ENST00000401957		ChiTaRS3.1			BF841281	CRIM1	chr2	36750511	+	RAPGEF5	chr7	22364653	+
intron-3CDS	ENST00000360319	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000360319	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000360319	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000360319	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000360319	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000360319	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000422373	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000422373	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000422373	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000422373	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000422373	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000422373	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369850	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369850	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369850	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369850	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000369850	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000369850	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369856	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369856	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369856	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000369856	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000369856	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000369856	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000344736	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000344736	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000344736	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000344736	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000344736	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000344736	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000498491	ENST00000434178		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000498491	ENST00000265052		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000498491	ENST00000398104		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-3CDS	ENST00000498491	ENST00000453507		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000498491	ENST00000476682		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-5UTR	ENST00000498491	ENST00000398101		ChiTaRS3.1			BF819641	FLNA	chrX	153581464	+	MGLL	chr3	127413933	-
intron-intron	ENST00000432884	ENST00000320389		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000432884	ENST00000498729		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000262942	ENST00000320389		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000262942	ENST00000498729		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000471960	ENST00000320389		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000471960	ENST00000498729		ChiTaRS3.1			BI016011	ARPC1A	chr7	98988839	+	KIF1A	chr2	241710801	-
intron-intron	ENST00000319023	ENST00000319023		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000319023	ENST00000539574		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000319023	ENST00000530055		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000319023	ENST00000526039		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000539574	ENST00000319023		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000539574	ENST00000539574		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000539574	ENST00000530055		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000539574	ENST00000526039		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000530055	ENST00000319023		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000530055	ENST00000539574		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000530055	ENST00000530055		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000530055	ENST00000526039		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000526039	ENST00000319023		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000526039	ENST00000539574		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000526039	ENST00000530055		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000526039	ENST00000526039		ChiTaRS3.1			BG995391	NADSYN1	chr11	71200050	-	NADSYN1	chr11	71199558	+
intron-intron	ENST00000582605	ENST00000582605		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000579964		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000578701		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000568797		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000582605		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000579964		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000578701		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000568797		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000582605		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000579964		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000578701		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000568797		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000582605		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000579964		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000578701		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000568797		ChiTaRS3.1			CA503371	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000467125	ENST00000467125		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000467125	ENST00000368498		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000467125	ENST00000535237		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000467125	ENST00000052569		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-intron	ENST00000368498	ENST00000467125		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000368498	ENST00000368498		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000368498	ENST00000535237		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000368498	ENST00000052569		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-intron	ENST00000535237	ENST00000467125		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000535237	ENST00000368498		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000535237	ENST00000535237		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000535237	ENST00000052569		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-intron	ENST00000052569	ENST00000467125		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000052569	ENST00000368498		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000052569	ENST00000535237		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
intron-3UTR	ENST00000052569	ENST00000052569		ChiTaRS3.1			AW168891	GOPC	chr6	117881568	+	GOPC	chr6	117881649	-
5CDS-intron	ENST00000330266	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000330266	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405975	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000415080	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5CDS-intron	ENST00000405006	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
5UTR-intron	ENST00000485353	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000402360	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000404790	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000397010		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000309576		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000397015		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000397012		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000397026		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000397000		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000539812		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000403856	ENST00000287820		ChiTaRS3.1			AY149631	THADA	chr2	43655236	-	PPARG	chr3	12361330	-
intron-intron	ENST00000273221	ENST00000273221		ChiTaRS3.1			AW503951	IQSEC1	chr3	12941666	+	IQSEC1	chr3	12942037	-
intron-intron	ENST00000273221	ENST00000473088		ChiTaRS3.1			AW503951	IQSEC1	chr3	12941666	+	IQSEC1	chr3	12942037	-
intron-intron	ENST00000473088	ENST00000273221		ChiTaRS3.1			AW503951	IQSEC1	chr3	12941666	+	IQSEC1	chr3	12942037	-
intron-intron	ENST00000473088	ENST00000473088		ChiTaRS3.1			AW503951	IQSEC1	chr3	12941666	+	IQSEC1	chr3	12942037	-
intron-intron	ENST00000446450	ENST00000446450		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000446450	ENST00000354956		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-3UTR	ENST00000446450	ENST00000354449		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000446450	ENST00000469654		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000354956	ENST00000446450		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000354956	ENST00000354956		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-3UTR	ENST00000354956	ENST00000354449		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000354956	ENST00000469654		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
3UTR-intron	ENST00000354449	ENST00000446450		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
3UTR-intron	ENST00000354449	ENST00000354956		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
3UTR-3UTR	ENST00000354449	ENST00000354449		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
3UTR-intron	ENST00000354449	ENST00000469654		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000469654	ENST00000446450		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000469654	ENST00000354956		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-3UTR	ENST00000469654	ENST00000354449		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000469654	ENST00000469654		ChiTaRS3.1			BU607761	ATG7	chr3	11597636	+	ATG7	chr3	11597788	-
intron-intron	ENST00000360843	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000360843	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000431350	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000442919	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000521943	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000434911	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000418658		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000397461		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000427331		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000358480		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000397459		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000448906		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000486857	ENST00000475817		ChiTaRS3.1			H72151	TLK1	chr2	172027314	-	CNTN4	chr3	2484393	+
intron-intron	ENST00000383737	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000383737	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000383737	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000383737	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000395734	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000395734	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000395734	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000395734	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000426837	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000426837	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000426837	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000426837	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000360240	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000360240	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000360240	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000360240	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000439356	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000439356	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000439356	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000439356	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000264724	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000264724	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000264724	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000264724	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000420772	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000420772	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000420772	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000420772	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000441748	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000441748	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000441748	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000441748	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000462206	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000462206	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000462206	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000462206	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000434267	ENST00000429687		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000434267	ENST00000250416		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000434267	ENST00000527915		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-intron	ENST00000434267	ENST00000555140		ChiTaRS3.1			BE708561	MAP4	chr3	47893054	+	PARP2	chr14	20814884	-
intron-3UTR	ENST00000520539	ENST00000379441		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000520539	ENST00000179765		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000520539	ENST00000551812		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000520539	ENST00000549884		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000520539	ENST00000553222		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000220959	ENST00000379441		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000220959	ENST00000179765		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000220959	ENST00000551812		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000220959	ENST00000549884		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000220959	ENST00000553222		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000518205	ENST00000379441		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000518205	ENST00000179765		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000518205	ENST00000551812		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000518205	ENST00000549884		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000518205	ENST00000553222		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000521922	ENST00000379441		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000521922	ENST00000179765		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000521922	ENST00000551812		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000521922	ENST00000549884		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000521922	ENST00000553222		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000519528	ENST00000379441		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000519528	ENST00000179765		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-3UTR	ENST00000519528	ENST00000551812		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000519528	ENST00000549884		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000519528	ENST00000553222		ChiTaRS3.1			AA368181	UBR5	chr8	103299793	+	BAZ2A	chr12	56990345	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425253	BCR	chr22	23632742	+	ABL1	chr9	133607147	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425253	BCR	chr22	23632742	+	ABL1	chr9	133607147	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425253	BCR	chr22	23632742	+	ABL1	chr9	133607147	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425253	BCR	chr22	23632742	+	ABL1	chr9	133607147	+
intron-intron	ENST00000332050	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000332050	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000397938	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000406548	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000331029	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000414183	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000333395	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000319349		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000393664		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000538265		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000545954		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000545089		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000591713		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
5CDS-intron	ENST00000332035	ENST00000586826		ChiTaRS3.1			AB005538	EWSR1	chr22	29684696	+	ETV4	chr17	41609377	-
intron-intron	ENST00000393432	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000393432	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000393432	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000393432	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000442819	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000442819	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000442819	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000442819	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000356731	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000356731	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000356731	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000356731	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000329433	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000329433	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000329433	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000329433	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000510411	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000510411	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000510411	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000510411	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000511300	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000511300	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000511300	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000511300	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000524180	ENST00000371068		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000524180	ENST00000491749		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000524180	ENST00000433625		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000524180	ENST00000538167		ChiTaRS3.1			AU140711	HNRNPH1	chr5	179045211	-	EFHC1	chr6	52367536	-
intron-intron	ENST00000361099	ENST00000234310		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000361099	ENST00000409752		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000361099	ENST00000409377		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000409465	ENST00000234310		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000409465	ENST00000409752		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000409465	ENST00000409377		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000540176	ENST00000234310		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000540176	ENST00000409752		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000540176	ENST00000409377		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392322	ENST00000234310		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392322	ENST00000409752		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392322	ENST00000409377		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392323	ENST00000234310		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392323	ENST00000409752		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
intron-intron	ENST00000392323	ENST00000409377		ChiTaRS3.1			BF379791	STAT1	chr2	191866819	+	PPP3R1	chr2	68432111	+
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE933271	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
Frame-shit	ENST00000245544	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000245544	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000245544	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000245544	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000245544	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000245544	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000245544	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000541827	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000541827	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000541827	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000541827	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000541827	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000541827	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000541827	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000579324	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579324	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579324	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579324	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579324	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579324	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579324	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-intron	ENST00000449421	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-intron	ENST00000449421	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3UTR	ENST00000449421	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3UTR	ENST00000449421	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000579298	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579298	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579298	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579298	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579298	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579298	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579298	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-intron	ENST00000447371	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-intron	ENST00000447371	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3UTR	ENST00000447371	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3UTR	ENST00000447371	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000540768	ENST00000245544		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000540768	ENST00000541827		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000540768	ENST00000579324		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000540768	ENST00000449421		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000540768	ENST00000579298		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000540768	ENST00000447371		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000540768	ENST00000540768		ChiTaRS3.1			CA313471	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-intron	ENST00000078429	ENST00000373566		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000373563		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409480		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409547		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409196		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409451		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000482666		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000452341		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000373566		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000373563		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409480		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409547		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409196		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409451		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000482666		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000452341		ChiTaRS3.1			AB013891	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000337774	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000296280	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000392472	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000495249	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000169293	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000392470	ENST00000254051		ChiTaRS3.1			CV413001	MASP1	chr3	186999695	+	TNS4	chr17	38647374	+
intron-intron	ENST00000382865	ENST00000382865		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000382865	ENST00000511885		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000382865	ENST00000515357		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000511885	ENST00000382865		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000511885	ENST00000511885		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000511885	ENST00000515357		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000515357	ENST00000382865		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000515357	ENST00000511885		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000515357	ENST00000515357		ChiTaRS3.1			CV389611	POLN	chr4	2160504	-	POLN	chr4	2160553	+
intron-intron	ENST00000317025	ENST00000355666		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-5UTR	ENST00000317025	ENST00000399017		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000317025	ENST00000354749		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000317025	ENST00000479930		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000317025	ENST00000540756		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000317025	ENST00000399010		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000433384	ENST00000355666		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-5UTR	ENST00000433384	ENST00000399017		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000433384	ENST00000354749		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000433384	ENST00000479930		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000433384	ENST00000540756		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000433384	ENST00000399010		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000527502	ENST00000355666		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-5UTR	ENST00000527502	ENST00000399017		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000527502	ENST00000354749		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000527502	ENST00000479930		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000527502	ENST00000540756		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000527502	ENST00000399010		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000316985	ENST00000355666		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-5UTR	ENST00000316985	ENST00000399017		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000316985	ENST00000354749		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000316985	ENST00000479930		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000316985	ENST00000540756		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000316985	ENST00000399010		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000525081	ENST00000355666		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-5UTR	ENST00000525081	ENST00000399017		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000525081	ENST00000354749		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000525081	ENST00000479930		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000525081	ENST00000540756		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000525081	ENST00000399010		ChiTaRS3.1			BI034861	WHSC1L1	chr8	38154117	-	TTC3	chr21	38456601	+
intron-intron	ENST00000302746	ENST00000417478		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000381006		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000226328		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000536664		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000502653		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000302746	ENST00000512331		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000417478		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000381006		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000226328		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000536664		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000502653		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000485460	ENST00000512331		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000417478		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000381006		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000226328		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000536664		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000502653		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000474765	ENST00000512331		ChiTaRS3.1			BF747731	PDHB	chr3	58415954	+	RUFY3	chr4	71671497	+
intron-intron	ENST00000344824	ENST00000540805		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000539194		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000447510		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000505450		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000508167		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000510224		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000543373		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000344824	ENST00000502943		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000540805		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000539194		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000447510		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000505450		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000508167		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000510224		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000543373		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000538887	ENST00000502943		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000540805		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000539194		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000447510		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000505450		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000508167		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000510224		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000543373		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000300933	ENST00000502943		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000540805		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000539194		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000447510		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000505450		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000508167		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000510224		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000543373		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
intron-intron	ENST00000591645	ENST00000502943		ChiTaRS3.1			BG955881	TPM4	chr19	16190831	-	PROM1	chr4	15980665	+
5CDS-intron	ENST00000397661	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
5CDS-intron	ENST00000397661	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
5CDS-intron	ENST00000397661	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
5CDS-intron	ENST00000397661	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000592199	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000592199	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000592199	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000592199	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587760	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587760	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587760	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587760	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000585575	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000585575	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000585575	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000585575	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000360105	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000360105	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000360105	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000360105	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588228	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588228	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588228	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588228	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587260	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587260	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587260	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000587260	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000358552	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000358552	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000358552	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
3UTR-intron	ENST00000358552	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588680	ENST00000262570		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588680	ENST00000448878		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588680	ENST00000476546		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
intron-intron	ENST00000588680	ENST00000542753		ChiTaRS3.1			BC052801	NFIX	chr19	13207015	+	CHCHD3	chr7	132719818	-
5CDS-intron	ENST00000279036	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279036	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000279035	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000372689	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000545755	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000535404	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
intron-intron	ENST00000341555	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000466387		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000496558		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000361291		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000402739		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000540488		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000541047		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000343114		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000496251		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
5CDS-intron	ENST00000543458	ENST00000409266		ChiTaRS3.1			BE938441	PIGT	chr20	44048017	+	CTNNA2	chr2	80392188	-
In-frame	ENST00000373823	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373823	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373823	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373823	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373823	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373808	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373808	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373808	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373808	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000436847	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000436847	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000436847	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000436847	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000449733	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000449733	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000449733	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000449733	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000412819	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000412819	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000412819	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000412819	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000394353	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000394353	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000394353	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000394353	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000341272	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000341272	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000341272	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000341272	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000545652	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000545652	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000545652	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000545652	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373818	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373818	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373818	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373818	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000485767	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000485767	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000485767	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000485767	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000373807	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000373807	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000373807	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-intron	ENST00000373807	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000373823		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000373808		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000436847		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000449733		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000412819		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000394353		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000341272		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000545652		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
Frame-shit	ENST00000373806	ENST00000373818		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373806	ENST00000485767		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373806	ENST00000373807		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
5CDS-intron	ENST00000373806	ENST00000373806		ChiTaRS3.1			AA715501	GSN	chr9	124094861	+	GSN	chr9	124094804	-
intron-3CDS	ENST00000301335	ENST00000301335		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000301335	ENST00000571650		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000301335	ENST00000382147		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000301335	ENST00000412517		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-intron	ENST00000301335	ENST00000574274		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000571650	ENST00000301335		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000571650	ENST00000571650		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000571650	ENST00000382147		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000571650	ENST00000412517		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-intron	ENST00000571650	ENST00000574274		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000382147	ENST00000301335		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000382147	ENST00000571650		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000382147	ENST00000382147		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000382147	ENST00000412517		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-intron	ENST00000382147	ENST00000574274		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000412517	ENST00000301335		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000412517	ENST00000571650		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000412517	ENST00000382147		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000412517	ENST00000412517		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-intron	ENST00000412517	ENST00000574274		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000574274	ENST00000301335		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000574274	ENST00000571650		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000574274	ENST00000382147		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3CDS	ENST00000574274	ENST00000412517		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-intron	ENST00000574274	ENST00000574274		ChiTaRS3.1			BF879851	SLC43A2	chr17	1478980	+	SLC43A2	chr17	1479947	-
intron-3UTR	ENST00000369209	ENST00000369209		ChiTaRS3.1			AA826311	HSPA12A	chr10	118431107	-	HSPA12A	chr10	118431046	+
intron-intron	ENST00000404583	ENST00000581865		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404583	ENST00000312655		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404583	ENST00000585166		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000581865		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000312655		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000585166		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000581865		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000312655		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000585166		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000581865		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000312655		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000585166		ChiTaRS3.1			AI655571	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000521277	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521277	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521737	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000336977	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000407272	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000517392	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000521522	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000519095	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368968	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000368970	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000520883	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000523787	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000521277		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000521737		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000336977		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000407272		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000517392		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000521522		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000519095		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000368968		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000368970		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000520883		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000523787		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000359793	ENST00000359793		ChiTaRS3.1			CV382081	CEP57L1	chr6	109438905	-	CEP57L1	chr6	109439403	+
intron-intron	ENST00000358077	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000358077	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000472284	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000469640	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000408954	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000491893	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000264357		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000542149		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000371251		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000371256		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000541091		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000371266		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000371264		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000466188	ENST00000479118		ChiTaRS3.1			BF994061	DAPK1	chr9	90117527	-	GRIA3	chrX	122437509	-
intron-intron	ENST00000584348	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000584348		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000571335		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000436810		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000542886		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000457293		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000270570		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000575023		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000395585		ChiTaRS3.1			AI638691	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000396062	ENST00000367903		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000396062	ENST00000534288		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000396062	ENST00000313961		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000396062	ENST00000530507		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000396062	ENST00000527988		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000216330	ENST00000367903		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000216330	ENST00000534288		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000216330	ENST00000313961		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000216330	ENST00000530507		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-intron	ENST00000216330	ENST00000527988		ChiTaRS3.1			BE708371	FKBP3	chr14	45587296	+	RGS5	chr1	163124168	-
intron-3UTR	ENST00000338368	ENST00000256689		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000338368	ENST00000551374		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000338368	ENST00000547252		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-3UTR	ENST00000314191	ENST00000256689		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000314191	ENST00000551374		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000314191	ENST00000547252		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-3UTR	ENST00000523565	ENST00000256689		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000523565	ENST00000551374		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000523565	ENST00000547252		ChiTaRS3.1			BU587911	PRKDC	chr8	48714800	-	SLC38A2	chr12	46752066	-
intron-intron	ENST00000265717	ENST00000361756		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000265717	ENST00000533380		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000265717	ENST00000393713		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000265717	ENST00000490867		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000265717	ENST00000545854		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000265717	ENST00000530137		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000361756		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000533380		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000393713		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000490867		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000545854		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
intron-intron	ENST00000393613	ENST00000530137		ChiTaRS3.1			GW493216	PRKAR2B	chr7	106729510	-	RNF121	chr11	71664187	+
3UTR-intron	ENST00000526104	ENST00000503538		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-3UTR	ENST00000526104	ENST00000312916		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000526104	ENST00000506806		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000325207	ENST00000503538		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-3UTR	ENST00000325207	ENST00000312916		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000325207	ENST00000506806		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000527696	ENST00000503538		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-3UTR	ENST00000527696	ENST00000312916		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000527696	ENST00000506806		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000531541	ENST00000503538		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-3UTR	ENST00000531541	ENST00000312916		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
3UTR-intron	ENST00000531541	ENST00000506806		ChiTaRS3.1			H52961	RIC8A	chr11	214377	+	AGGF1	chr5	76360175	+
intron-intron	ENST00000368533	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368533	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368533	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000469717	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000469717	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000469717	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000330188	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000330188	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000330188	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341485	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341485	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341485	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341372	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341372	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000341372	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000328159	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000328159	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000328159	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000271850	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000271850	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000271850	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000302206	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000302206	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000302206	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368531	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368531	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368531	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000323144	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000323144	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000323144	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368530	ENST00000389048		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368530	ENST00000431873		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
intron-intron	ENST00000368530	ENST00000498037		ChiTaRS3.1			AF112866	TPM3	chr1	154135578	-	ALK	chr2	29447503	-
5CDS-intron	ENST00000258761	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
5CDS-intron	ENST00000258761	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000433922	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000432311	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000452975	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000405202	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000378814		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000259711		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000378843		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000378826		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000378816		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000502704		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-intron	ENST00000407633	ENST00000503342		ChiTaRS3.1			T07391	BZW2	chr7	16746144	+	KIF13A	chr6	17965364	+
intron-3CDS	ENST00000406775	ENST00000325874		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000406775	ENST00000581280		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000406775	ENST00000394744		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-3CDS	ENST00000342771	ENST00000325874		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000342771	ENST00000581280		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000342771	ENST00000394744		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-3CDS	ENST00000403018	ENST00000325874		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000403018	ENST00000581280		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000403018	ENST00000394744		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-3CDS	ENST00000489774	ENST00000325874		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000489774	ENST00000581280		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
intron-intron	ENST00000489774	ENST00000394744		ChiTaRS3.1			AW818431	AUTS2	chr7	69912562	+	RAB11FIP4	chr17	29855505	-
5CDS-intron	ENST00000310118	ENST00000304621		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000310118	ENST00000317571		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000310118	ENST00000578150		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000310118	ENST00000584250		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000310118	ENST00000577185		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000310118	ENST00000540918		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000304621		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000317571		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000578150		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000584250		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000577185		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000435761	ENST00000540918		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000304621		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000317571		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000578150		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000584250		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000577185		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
intron-intron	ENST00000439383	ENST00000540918		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000304621		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000317571		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000578150		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000584250		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000577185		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
3UTR-intron	ENST00000459910	ENST00000540918		ChiTaRS3.1			BE002761	PSMD2	chr3	184018227	+	TTC39C	chr18	21619719	+
5CDS-intron	ENST00000325631	ENST00000380027		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000396855		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000305836		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000380034		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000396847		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000483835		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000325631	ENST00000396853		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000380027		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000396855		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000305836		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000380034		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000396847		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000483835		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
5CDS-intron	ENST00000413223	ENST00000396853		ChiTaRS3.1			AW379451	MARVELD2	chr5	68715727	-	TRIM5	chr11	5729418	-
intron-3UTR	ENST00000376630	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000376630	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000415649	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000415649	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000415289	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000415289	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000444683	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000444683	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000383597	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000383597	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000425603	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-3UTR	ENST00000425603	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
3UTR-3UTR	ENST00000427936	ENST00000326765		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
3UTR-3UTR	ENST00000427936	ENST00000356591		ChiTaRS3.1			BP398261	HLA-E	chr6	1793644	+	APOLD1	chr12	12944025	+
intron-intron	ENST00000339861	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000339861	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420987	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000455551	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000343780	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000450295	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000438547	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000356444	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000422704	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000420101	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000339861		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000420987		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000455551		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000343780		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000450295		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000438547		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000356444		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000422704		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000420101		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-intron	ENST00000469653	ENST00000469653		ChiTaRS3.1			BE938931	SEMA4D	chr9	91993333	-	SEMA4D	chr9	91994107	-
intron-3CDS	ENST00000302516	ENST00000377387		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000377390		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000377394		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000227503		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000334944		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000422298		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-3CDS	ENST00000302516	ENST00000433274		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-intron	ENST00000302516	ENST00000489544		ChiTaRS3.1			AA324241	SF3B3	chr16	70557884	+	SF1	chr11	64535628	-
intron-intron	ENST00000450536	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000450536	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000450536	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000450536	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000450536	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000450536	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000367663	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000409812	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000258062	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000415951	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000450536		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000367663		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000409812		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000258062		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000415951		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-intron	ENST00000531675	ENST00000531675		ChiTaRS3.1			BU674501	REPS1	chr6	139228695	-	REPS1	chr6	139228506	+
intron-3CDS	ENST00000344063	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000344063	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000344063	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000344063	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000344063	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000344063	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000344063	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000431533	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000431533	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000428193	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000428193	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558815	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000558815	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-3CDS	ENST00000560583	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
3UTR-intron	ENST00000560583	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000560055	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000560055	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000559463	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000559463	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558131	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000558131	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000558752	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000558752	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000202028		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000373950		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000441639		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000373946		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000338074		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-3CDS	ENST00000458349	ENST00000373941		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000458349	ENST00000479336		ChiTaRS3.1			AA776201	RPL28	chr19	55899611	-	EPB41L1	chr20	34776411	-
intron-intron	ENST00000553514	ENST00000597960		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000553514	ENST00000610101		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000553514	ENST00000596558		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000553514	ENST00000222308		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000553514	ENST00000608443		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000553514	ENST00000453489		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000597960		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000610101		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000596558		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000222308		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000608443		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000329559	ENST00000453489		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000597960		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000610101		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000596558		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000222308		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000608443		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000605997	ENST00000453489		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000597960		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000610101		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000596558		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000222308		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000608443		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000555441	ENST00000453489		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000597960		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000610101		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000596558		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000222308		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000608443		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
intron-intron	ENST00000556555	ENST00000453489		ChiTaRS3.1			BI910091	NDUFB1	chr14	92587482	-	FKBP8	chr19	18649519	-
5CDS-5UTR	ENST00000334270	ENST00000334270		ChiTaRS3.1			BP207641	TTF1	chr9	135275421	-	TTF1	chr9	135278217	-
5CDS-intron	ENST00000334270	ENST00000461970		ChiTaRS3.1			BP207641	TTF1	chr9	135275421	-	TTF1	chr9	135278217	-
intron-5UTR	ENST00000461970	ENST00000334270		ChiTaRS3.1			BP207641	TTF1	chr9	135275421	-	TTF1	chr9	135278217	-
intron-intron	ENST00000461970	ENST00000461970		ChiTaRS3.1			BP207641	TTF1	chr9	135275421	-	TTF1	chr9	135278217	-
intron-intron	ENST00000409185	ENST00000409185		ChiTaRS3.1			BE177741	FAM168B	chr2	131843495	-	FAM168B	chr2	131844024	+
intron-intron	ENST00000409185	ENST00000389915		ChiTaRS3.1			BE177741	FAM168B	chr2	131843495	-	FAM168B	chr2	131844024	+
intron-intron	ENST00000389915	ENST00000409185		ChiTaRS3.1			BE177741	FAM168B	chr2	131843495	-	FAM168B	chr2	131844024	+
intron-intron	ENST00000389915	ENST00000389915		ChiTaRS3.1			BE177741	FAM168B	chr2	131843495	-	FAM168B	chr2	131844024	+
intron-intron	ENST00000340281	ENST00000336278		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000340281	ENST00000528525		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000361911	ENST00000336278		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000361911	ENST00000528525		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000370447	ENST00000336278		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000370447	ENST00000528525		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000455342	ENST00000336278		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000455342	ENST00000528525		ChiTaRS3.1			BF355751	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
3UTR-3UTR	ENST00000409794	ENST00000409794		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000409794	ENST00000378550		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000409794	ENST00000425673		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000409794	ENST00000458508		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000409794	ENST00000409797		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000378550	ENST00000409794		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-intron	ENST00000378550	ENST00000378550		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000378550	ENST00000425673		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-intron	ENST00000378550	ENST00000458508		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000378550	ENST00000409797		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000425673	ENST00000409794		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000425673	ENST00000378550		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000425673	ENST00000425673		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000425673	ENST00000458508		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000425673	ENST00000409797		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000458508	ENST00000409794		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-intron	ENST00000458508	ENST00000378550		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000458508	ENST00000425673		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-intron	ENST00000458508	ENST00000458508		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
5CDS-3UTR	ENST00000458508	ENST00000409797		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000409797	ENST00000409794		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000409797	ENST00000378550		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000409797	ENST00000425673		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-intron	ENST00000409797	ENST00000458508		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
3UTR-3UTR	ENST00000409797	ENST00000409797		ChiTaRS3.1			BI010391	PLEKHG2	chr19	39915940	-	PLEKHG2	chr19	39916117	+
intron-3UTR	ENST00000429711	ENST00000178638		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000429711	ENST00000344366		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000429711	ENST00000422263		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-intron	ENST00000429711	ENST00000560666		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396957	ENST00000178638		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396957	ENST00000344366		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396957	ENST00000422263		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-intron	ENST00000396957	ENST00000560666		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000273223	ENST00000178638		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000273223	ENST00000344366		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000273223	ENST00000422263		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-intron	ENST00000273223	ENST00000560666		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000435983	ENST00000178638		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000435983	ENST00000344366		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000435983	ENST00000422263		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-intron	ENST00000435983	ENST00000560666		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396953	ENST00000178638		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396953	ENST00000344366		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-3UTR	ENST00000396953	ENST00000422263		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
intron-intron	ENST00000396953	ENST00000560666		ChiTaRS3.1			AI343531	RPL32	chr3	12877654	+	CA12	chr15	63617526	+
Frame-shit	ENST00000382592	ENST00000374515		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
Frame-shit	ENST00000382592	ENST00000374517		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
5CDS-5UTR	ENST00000382592	ENST00000487892		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-3CDS	ENST00000542899	ENST00000374515		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-3CDS	ENST00000542899	ENST00000374517		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-5UTR	ENST00000542899	ENST00000487892		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-3CDS	ENST00000472754	ENST00000374515		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-3CDS	ENST00000472754	ENST00000374517		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-5UTR	ENST00000472754	ENST00000487892		ChiTaRS3.1			D58281	LATS2	chr13	21547175	-	TXN	chr9	113007080	-
intron-3CDS	ENST00000276297	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000276297	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000358919	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000358919	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000512044	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000512044	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000316609	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000316609	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000511869	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000511869	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000510318	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000510318	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3CDS	ENST00000520226	ENST00000276297		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000358919		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000512044		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000316609		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000511869		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000510318		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-intron	ENST00000520226	ENST00000520226		ChiTaRS3.1			T78001	DLC1	chr8	13356639	+	DLC1	chr8	13356582	-
intron-3UTR	ENST00000265062	ENST00000378251		ChiTaRS3.1			BF337771	RAB7A	chr3	128487686	+	LRRC47	chr1	3697253	-
intron-3UTR	ENST00000482525	ENST00000378251		ChiTaRS3.1			BF337771	RAB7A	chr3	128487686	+	LRRC47	chr1	3697253	-
intron-3UTR	ENST00000485280	ENST00000378251		ChiTaRS3.1			BF337771	RAB7A	chr3	128487686	+	LRRC47	chr1	3697253	-
Frame-shit	ENST00000398606	ENST00000392133		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
Frame-shit	ENST00000398606	ENST00000392132		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
5CDS-3UTR	ENST00000398606	ENST00000471649		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
Frame-shit	ENST00000398603	ENST00000392133		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
Frame-shit	ENST00000398603	ENST00000392132		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
5CDS-3UTR	ENST00000398603	ENST00000471649		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
intron-3CDS	ENST00000498765	ENST00000392133		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
intron-3CDS	ENST00000498765	ENST00000392132		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
intron-3UTR	ENST00000498765	ENST00000471649		ChiTaRS3.1			BF819091	GSTP1	chr11	67351613	-	XRCC5	chr2	217002818	+
intron-intron	ENST00000331495	ENST00000331495		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000331495	ENST00000328118		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000331495	ENST00000592006		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000331495	ENST00000587489		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000328118	ENST00000331495		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000328118	ENST00000328118		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000328118	ENST00000592006		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000328118	ENST00000587489		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000592006	ENST00000331495		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000592006	ENST00000328118		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000592006	ENST00000592006		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000592006	ENST00000587489		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000587489	ENST00000331495		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000587489	ENST00000328118		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000587489	ENST00000592006		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-intron	ENST00000587489	ENST00000587489		ChiTaRS3.1			AK131091	FMNL1	chr17	43311115	-	FMNL1	chr17	43311255	+
intron-3UTR	ENST00000368468	ENST00000368468		ChiTaRS3.1			AA828041	MAN1A1	chr6	119500279	-	MAN1A1	chr6	119500228	+
intron-intron	ENST00000368468	ENST00000368466		ChiTaRS3.1			AA828041	MAN1A1	chr6	119500279	-	MAN1A1	chr6	119500228	+
intron-3UTR	ENST00000368466	ENST00000368468		ChiTaRS3.1			AA828041	MAN1A1	chr6	119500279	-	MAN1A1	chr6	119500228	+
intron-intron	ENST00000368466	ENST00000368466		ChiTaRS3.1			AA828041	MAN1A1	chr6	119500279	-	MAN1A1	chr6	119500228	+
intron-intron	ENST00000473442	ENST00000396353		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000396355		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000396354		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000342673		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000473442	ENST00000571896		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396353		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396355		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000396354		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000342673		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000400613	ENST00000571896		ChiTaRS3.1			AK092551	C9orf152	chr9	112963314	-	NDE1	chr16	15814121	-
intron-intron	ENST00000316694	ENST00000368921		ChiTaRS3.1			AX747021	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000352886	ENST00000368921		ChiTaRS3.1			AX747021	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000539052	ENST00000368921		ChiTaRS3.1			AX747021	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000354098	ENST00000368921		ChiTaRS3.1			AX747021	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
3UTR-3UTR	ENST00000291574	ENST00000291574		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
3UTR-intron	ENST00000291574	ENST00000380221		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
3UTR-intron	ENST00000291574	ENST00000483973		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-3UTR	ENST00000380221	ENST00000291574		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000380221	ENST00000380221		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000380221	ENST00000483973		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-3UTR	ENST00000483973	ENST00000291574		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000483973	ENST00000380221		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000483973	ENST00000483973		ChiTaRS3.1			BQ925841	TRAPPC10	chr21	45525007	-	TRAPPC10	chr21	45525057	+
intron-intron	ENST00000371558	ENST00000264093		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000371558	ENST00000348222		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000371558	ENST00000462685		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000371558	ENST00000356837		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000346330	ENST00000264093		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000346330	ENST00000348222		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000346330	ENST00000462685		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000346330	ENST00000356837		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000469205	ENST00000264093		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000469205	ENST00000348222		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000469205	ENST00000462685		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000469205	ENST00000356837		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
5UTR-intron	ENST00000371569	ENST00000264093		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
5UTR-intron	ENST00000371569	ENST00000348222		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
5UTR-intron	ENST00000371569	ENST00000462685		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
5UTR-intron	ENST00000371569	ENST00000356837		ChiTaRS3.1			BF926421	UBE2A	chrX	118715045	-	DGUOK	chr2	74177308	-
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000395850		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000533403		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000351554		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000415002		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BE858231	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000481487	ENST00000481487		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000481487	ENST00000373471		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000481487	ENST00000609187		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000481487	ENST00000496770		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000373471	ENST00000481487		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000373471	ENST00000373471		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000373471	ENST00000609187		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000373471	ENST00000496770		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000609187	ENST00000481487		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000609187	ENST00000373471		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000609187	ENST00000609187		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000609187	ENST00000496770		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000496770	ENST00000481487		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000496770	ENST00000373471		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000496770	ENST00000609187		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-5UTR	ENST00000496770	ENST00000496770		ChiTaRS3.1			AV722831	FNDC5	chr1	33328906	-	FNDC5	chr1	33333993	-
intron-intron	ENST00000474531	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-intron	ENST00000394481	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-intron	ENST00000360997	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-intron	ENST00000464064	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-intron	ENST00000447756	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-intron	ENST00000497310	ENST00000405650		ChiTaRS3.1			D44731	FAM107A	chr3	58551406	-	SRD5A2	chr2	31800576	+
intron-3CDS	ENST00000535648	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000535648	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000346706	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000340094	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000345230	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000350763	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000341037	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000423613	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000537320	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000542877	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000535648		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000346706		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000340094		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000345230		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000350763		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000341037		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000423613		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000537320		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000542877		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000481475	ENST00000481475		ChiTaRS3.1			BF770941	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3UTR	ENST00000205636	ENST00000360620		ChiTaRS3.1			AW579301	CMTM6	chr3	32523472	+	EPHB4	chr7	100400632	+
intron-3UTR	ENST00000205636	ENST00000358173		ChiTaRS3.1			AW579301	CMTM6	chr3	32523472	+	EPHB4	chr7	100400632	+
intron-intron	ENST00000205636	ENST00000477446		ChiTaRS3.1			AW579301	CMTM6	chr3	32523472	+	EPHB4	chr7	100400632	+
intron-intron	ENST00000546128	ENST00000356462		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000400345		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000589054		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000256832		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000382850		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000256830		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000588516		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000456986		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000435432		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000357895		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000586263		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000456173		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000546128	ENST00000431212		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000356462		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000400345		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000589054		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000256832		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000382850		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000256830		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000588516		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000456986		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000435432		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000357895		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000586263		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000456173		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371923	ENST00000431212		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000356462		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000400345		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000589054		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000256832		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000382850		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000256830		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000588516		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000456986		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000435432		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000357895		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000586263		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000456173		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000271153	ENST00000431212		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000356462		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000400345		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000589054		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000256832		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000382850		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000256830		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000588516		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000456986		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000435432		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000357895		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000586263		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000456173		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000371919	ENST00000431212		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000356462		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000400345		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000589054		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000256832		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000382850		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000256830		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000588516		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000456986		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000435432		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000357895		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000586263		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000456173		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000452782	ENST00000431212		ChiTaRS3.1			BG990991	CYP4B1	chr1	47283611	-	NEDD4L	chr18	55959696	-
intron-intron	ENST00000236980	ENST00000391875		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000236980	ENST00000281701		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000236980	ENST00000469075		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000236980	ENST00000482491		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000236980	ENST00000340871		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000236980	ENST00000361463		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-5UTR	ENST00000236980	ENST00000468673		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000391875		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000281701		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000469075		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000482491		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000340871		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000402774	ENST00000361463		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-5UTR	ENST00000402774	ENST00000468673		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000391875		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000281701		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000469075		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000482491		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000340871		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-intron	ENST00000403094	ENST00000361463		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-5UTR	ENST00000403094	ENST00000468673		ChiTaRS3.1			DA378651	FASTKD2	chr2	207630683	+	NVL	chr1	224500289	-
intron-3CDS	ENST00000311669	ENST00000311669		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000311669	ENST00000456471		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000311669	ENST00000567733		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000456471	ENST00000311669		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000456471	ENST00000456471		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000456471	ENST00000567733		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000567733	ENST00000311669		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000567733	ENST00000456471		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000567733	ENST00000567733		ChiTaRS3.1			BQ669361	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000258484	ENST00000296604		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000258484	ENST00000502994		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000258484	ENST00000515759		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000409654	ENST00000296604		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000409654	ENST00000502994		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000409654	ENST00000515759		ChiTaRS3.1			CB409291	EPC2	chr2	149413991	-	RANBP3L	chr5	36254115	-
intron-intron	ENST00000318789	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000318789	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000318789	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000475937	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000475937	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000475937	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000493089	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000493089	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000493089	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000484350	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000484350	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000484350	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000318779	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000318779	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000318779	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000491238	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000491238	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000491238	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000498215	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000498215	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000498215	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000468577	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000468577	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000468577	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000472382	ENST00000322213		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000472382	ENST00000469129		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-intron	ENST00000472382	ENST00000375340		ChiTaRS3.1			BF897241	FOXP1	chr3	71454241	+	SMC1A	chrX	53441649	-
intron-3CDS	ENST00000549578	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000360579		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000552130		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000447578		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000546588		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549970		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			AA411461	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
5UTR-5UTR	ENST00000400098	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400098	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400098	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400098	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400100	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400100	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400100	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000400097	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000400097	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000400097	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-3UTR	ENST00000553597	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-intron	ENST00000553597	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
3UTR-5UTR	ENST00000553597	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000390687	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000390687	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000390687	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000346403	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000346403	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000346403	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000554227	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000554227	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000554227	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-3UTR	ENST00000577565	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-intron	ENST00000577565	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
5UTR-5UTR	ENST00000577565	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400098		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400100		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000400097		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-3UTR	ENST00000444203	ENST00000553597		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000390687		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-intron	ENST00000444203	ENST00000346403		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000554227		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000577565		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-5UTR	ENST00000444203	ENST00000444203		ChiTaRS3.1			BC000611	SNRPN	chr15	25213172	-	SNRPN	chr15	25219468	+
intron-3UTR	ENST00000316403	ENST00000316403		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000316403	ENST00000546343		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000316403	ENST00000560366		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000316403	ENST00000405140		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000316403	ENST00000523500		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000546343	ENST00000316403		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000546343	ENST00000546343		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000546343	ENST00000560366		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000546343	ENST00000405140		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000546343	ENST00000523500		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000560366	ENST00000316403		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000560366	ENST00000546343		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000560366	ENST00000560366		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000560366	ENST00000405140		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000560366	ENST00000523500		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000405140	ENST00000316403		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000405140	ENST00000546343		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000405140	ENST00000560366		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000405140	ENST00000405140		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000405140	ENST00000523500		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000523500	ENST00000316403		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000523500	ENST00000546343		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000523500	ENST00000560366		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000523500	ENST00000405140		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-3UTR	ENST00000523500	ENST00000523500		ChiTaRS3.1			AW516531	CLU	chr8	27455687	+	CLU	chr8	27455753	-
intron-intron	ENST00000265742	ENST00000347159		ChiTaRS3.1			AA328351	ANKIB1	chr7	91887097	-	PSAT1	chr9	80938475	+
intron-intron	ENST00000265742	ENST00000376588		ChiTaRS3.1			AA328351	ANKIB1	chr7	91887097	-	PSAT1	chr9	80938475	+
intron-intron	ENST00000486698	ENST00000347159		ChiTaRS3.1			AA328351	ANKIB1	chr7	91887097	-	PSAT1	chr9	80938475	+
intron-intron	ENST00000486698	ENST00000376588		ChiTaRS3.1			AA328351	ANKIB1	chr7	91887097	-	PSAT1	chr9	80938475	+
intron-intron	ENST00000335185	ENST00000370250		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000335185	ENST00000517724		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000335185	ENST00000210633		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000335185	ENST00000519756		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000534415	ENST00000370250		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000534415	ENST00000517724		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000534415	ENST00000210633		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000534415	ENST00000519756		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000531481	ENST00000370250		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000531481	ENST00000517724		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000531481	ENST00000210633		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
intron-intron	ENST00000531481	ENST00000519756		ChiTaRS3.1			BQ012806	CCDC73	chr11	32802235	-	SEMA4G	chr10	102741133	+
3UTR-3UTR	ENST00000337002	ENST00000337002		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
3UTR-intron	ENST00000337002	ENST00000480708		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
3UTR-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-3UTR	ENST00000480708	ENST00000337002		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000480708	ENST00000480708		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-3UTR	ENST00000470355	ENST00000337002		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000470355	ENST00000480708		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			BE763851	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000336787	ENST00000336787		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000336787	ENST00000396307		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000336787	ENST00000564609		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000336787	ENST00000569493		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000336787	ENST00000561545		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000396307	ENST00000336787		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000396307	ENST00000396307		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000396307	ENST00000564609		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000396307	ENST00000569493		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000396307	ENST00000561545		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000564609	ENST00000336787		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000564609	ENST00000396307		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000564609	ENST00000564609		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000564609	ENST00000569493		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000564609	ENST00000561545		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000569493	ENST00000336787		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000569493	ENST00000396307		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000569493	ENST00000564609		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000569493	ENST00000569493		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000569493	ENST00000561545		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000561545	ENST00000336787		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000561545	ENST00000396307		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000561545	ENST00000564609		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000561545	ENST00000569493		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-intron	ENST00000561545	ENST00000561545		ChiTaRS3.1			BF837211	RAB27A	chr15	55558907	+	RAB27A	chr15	55559129	-
intron-3UTR	ENST00000264235	ENST00000311028		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000264235	ENST00000395923		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000264235	ENST00000220931		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000521599		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000522951		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000519508		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000264235	ENST00000521371		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000311028		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000395923		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000316626	ENST00000220931		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000521599		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000522951		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000519508		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000316626	ENST00000521371		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000311028		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000395923		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000473886	ENST00000220931		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000521599		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000522951		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000519508		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-intron	ENST00000473886	ENST00000521371		ChiTaRS3.1			BG014481	GSK3B	chr3	119542375	-	NCALD	chr8	102699502	-
intron-3UTR	ENST00000265044	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000265044	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000265044	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000265044	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000265044	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000265044	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000265044	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000467789	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000467789	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000467789	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000467789	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000467789	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000467789	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000467789	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000476217	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000476217	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000476217	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000476217	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000476217	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000476217	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000476217	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000478842	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000478842	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000478842	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000478842	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000478842	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000478842	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000478842	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000463503	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000463503	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000463503	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000463503	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000463503	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000463503	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000463503	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000496050	ENST00000265085		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000496050	ENST00000520867		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-3UTR	ENST00000496050	ENST00000334035		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000496050	ENST00000519835		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000496050	ENST00000522336		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000496050	ENST00000517880		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
intron-intron	ENST00000496050	ENST00000519467		ChiTaRS3.1			AI973221	SSR3	chr3	156259268	+	CPEB4	chr5	173385112	-
5CDS-intron	ENST00000336308	ENST00000536005		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000336308	ENST00000299694		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000336308	ENST00000561796		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000336308	ENST00000564819		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000336308	ENST00000563075		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
3UTR-intron	ENST00000578232	ENST00000536005		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
3UTR-intron	ENST00000578232	ENST00000299694		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
3UTR-intron	ENST00000578232	ENST00000561796		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
3UTR-intron	ENST00000578232	ENST00000564819		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
3UTR-intron	ENST00000578232	ENST00000563075		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000544210	ENST00000536005		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000544210	ENST00000299694		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000544210	ENST00000561796		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000544210	ENST00000564819		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000544210	ENST00000563075		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000394250	ENST00000536005		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000394250	ENST00000299694		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000394250	ENST00000561796		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000394250	ENST00000564819		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000394250	ENST00000563075		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000580611	ENST00000536005		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000580611	ENST00000299694		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000580611	ENST00000561796		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000580611	ENST00000564819		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
5CDS-intron	ENST00000580611	ENST00000563075		ChiTaRS3.1			M85471	STARD3	chr17	37815317	-	BEAN1	chr16	66511033	-
intron-intron	ENST00000377298	ENST00000361205		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000399848		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000359446		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000587757		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000585931		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000586765		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000590308		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377298	ENST00000592991		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000361205		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000399848		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000359446		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000587757		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000585931		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000586765		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000590308		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000361311	ENST00000592991		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000361205		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000399848		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000359446		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000587757		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000585931		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000586765		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000590308		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000377288	ENST00000592991		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000361205		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000399848		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000359446		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000587757		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000585931		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000586765		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000590308		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-intron	ENST00000477264	ENST00000592991		ChiTaRS3.1			BF934211	CLSTN1	chr1	9790469	+	LDLRAD4	chr18	13368095	+
intron-3UTR	ENST00000348715	ENST00000348715		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000348715	ENST00000397647		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000348715	ENST00000263335		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000348715	ENST00000429538		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-intron	ENST00000348715	ENST00000263334		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000397647	ENST00000348715		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000397647	ENST00000397647		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000397647	ENST00000263335		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000397647	ENST00000429538		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-intron	ENST00000397647	ENST00000263334		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263335	ENST00000348715		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263335	ENST00000397647		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263335	ENST00000263335		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263335	ENST00000429538		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-intron	ENST00000263335	ENST00000263334		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000429538	ENST00000348715		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000429538	ENST00000397647		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000429538	ENST00000263335		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000429538	ENST00000429538		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-intron	ENST00000429538	ENST00000263334		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263334	ENST00000348715		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263334	ENST00000397647		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263334	ENST00000263335		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3UTR	ENST00000263334	ENST00000429538		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-intron	ENST00000263334	ENST00000263334		ChiTaRS3.1			BG164921	PAX8	chr2	113975955	+	PAX8	chr2	113975901	-
intron-3CDS	ENST00000323482	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000323482	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000323482	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000432802	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000432802	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000432802	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000376726	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000376726	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000376726	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000484396	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000484396	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000484396	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000537502	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000537502	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000537502	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000542618	ENST00000262554		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000542618	ENST00000482632		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-intron	ENST00000542618	ENST00000337841		ChiTaRS3.1			BG951421	ACSS1	chr20	24987624	-	SPTLC1	chr9	94794795	+
intron-3CDS	ENST00000599715	ENST00000358794		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000305218		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000538945		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000543847		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000599715	ENST00000540501		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000358794		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000305218		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000538945		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000543847		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000006724	ENST00000540501		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000358794		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000305218		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000538945		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000543847		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000338196	ENST00000540501		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000358794		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000305218		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000538945		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000543847		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000401731	ENST00000540501		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000358794		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000305218		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000538945		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000543847		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000602225	ENST00000540501		ChiTaRS3.1			BQ326141	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000405876	ENST00000291535		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000405876	ENST00000450356		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000405876	ENST00000319294		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-3UTR	ENST00000405876	ENST00000398367		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-3CDS	ENST00000312777	ENST00000291535		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000312777	ENST00000450356		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000312777	ENST00000319294		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-3UTR	ENST00000312777	ENST00000398367		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-3CDS	ENST00000550780	ENST00000291535		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000550780	ENST00000450356		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-intron	ENST00000550780	ENST00000319294		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
intron-3UTR	ENST00000550780	ENST00000398367		ChiTaRS3.1			BI024691	TCHP	chr12	110390958	+	UBASH3A	chr21	43867264	+
3UTR-intron	ENST00000254644	ENST00000378137		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
3UTR-intron	ENST00000254644	ENST00000325718		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
3UTR-intron	ENST00000254644	ENST00000579179		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000605125	ENST00000378137		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000605125	ENST00000325718		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000605125	ENST00000579179		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
3UTR-intron	ENST00000337109	ENST00000378137		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
3UTR-intron	ENST00000337109	ENST00000325718		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
3UTR-intron	ENST00000337109	ENST00000579179		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000409180	ENST00000378137		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000409180	ENST00000325718		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-intron	ENST00000409180	ENST00000579179		ChiTaRS3.1			BQ359421	MRPL35	chr2	86439807	-	MLLT6	chr17	36872913	+
intron-3CDS	ENST00000335681	ENST00000325722		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000335681	ENST00000373266		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000335681	ENST00000485551		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-3CDS	ENST00000542504	ENST00000325722		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000542504	ENST00000373266		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000542504	ENST00000485551		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-3CDS	ENST00000486017	ENST00000325722		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000486017	ENST00000373266		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000486017	ENST00000485551		ChiTaRS3.1			CR991271	NPAS2	chr2	101487005	+	KIAA0319L	chr1	35972739	-
intron-intron	ENST00000545260	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545260	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545260	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545260	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545693	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545693	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545693	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000545693	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000350537	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000350537	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000350537	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000350537	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000346874	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000346874	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000346874	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000346874	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374789	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374789	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374789	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374789	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374790	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374790	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374790	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374790	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374794	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374794	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374794	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374794	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374788	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374788	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374788	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374788	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000466092	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000466092	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000466092	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000466092	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374776	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374776	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374776	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374776	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000340077	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000340077	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000340077	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000340077	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000544292	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000544292	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000544292	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000544292	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374773	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374773	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374773	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374773	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374768	ENST00000283351		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374768	ENST00000582539		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374768	ENST00000582513		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000374768	ENST00000584876		ChiTaRS3.1			AW934791	PARD3	chr10	34770569	+	TRAPPC8	chr18	29501791	+
intron-intron	ENST00000375643	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375643		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375629		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000443024		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000447699		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375627		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000474340		ChiTaRS3.1			AI916151	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-3CDS	ENST00000377921	ENST00000325954		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000377921	ENST00000413266		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-intron	ENST00000377921	ENST00000542701		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000345264	ENST00000325954		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000345264	ENST00000413266		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-intron	ENST00000345264	ENST00000542701		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000602389	ENST00000325954		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000602389	ENST00000413266		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-intron	ENST00000602389	ENST00000542701		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000464074	ENST00000325954		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-3CDS	ENST00000464074	ENST00000413266		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
intron-intron	ENST00000464074	ENST00000542701		ChiTaRS3.1			DA951661	RSU1	chr10	16824063	-	RNF10	chr12	120998642	+
5CDS-intron	ENST00000548411	ENST00000548411		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000548411	ENST00000281474		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000548411	ENST00000551848		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000548411	ENST00000550207		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000548411	ENST00000551086		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000281474	ENST00000548411		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000281474	ENST00000281474		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000281474	ENST00000551848		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000281474	ENST00000550207		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
5CDS-intron	ENST00000281474	ENST00000551086		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551848	ENST00000548411		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551848	ENST00000281474		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551848	ENST00000551848		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551848	ENST00000550207		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551848	ENST00000551086		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000550207	ENST00000548411		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000550207	ENST00000281474		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000550207	ENST00000551848		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000550207	ENST00000550207		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000550207	ENST00000551086		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551086	ENST00000548411		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551086	ENST00000281474		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551086	ENST00000551848		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551086	ENST00000550207		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000551086	ENST00000551086		ChiTaRS3.1			AW367751	BICD1	chr12	32480681	-	BICD1	chr12	32484157	-
intron-intron	ENST00000519416	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000519416	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000519416	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000519416	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000519416	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000519416	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000519416	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520615	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520615	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520615	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520615	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520615	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520615	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000443286	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000443286	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000443286	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000443286	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000443286	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000443286	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520340	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520340	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520340	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520340	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520340	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520340	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000518415	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000518415	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000518415	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000518415	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000518415	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000518415	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000522752	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000522752	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000522752	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000522752	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000522752	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000522752	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000348567	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000348567	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000348567	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000348567	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000348567	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000348567	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000330691	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000330691	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000330691	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000330691	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000330691	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000330691	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000317827	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000317827	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000317827	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000317827	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000317827	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000317827	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000379931	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000379931	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000379931	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000379931	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000379931	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000379931	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000276520	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000276520	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000276520	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000276520	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-3UTR	ENST00000276520	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
3UTR-intron	ENST00000276520	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520973	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520973	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520973	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520973	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520973	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520973	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000519416		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000520615		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000443286		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000520340		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000518415		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000522752		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520611	ENST00000348567		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520611	ENST00000330691		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520611	ENST00000317827		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520611	ENST00000379931		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-3UTR	ENST00000520611	ENST00000276520		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000520973		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000520611	ENST00000520611		ChiTaRS3.1			BU615361	TACC1	chr8	38710099	-	TACC1	chr8	38709900	+
intron-intron	ENST00000361205	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000361205		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000399848		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000359446		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000587757		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000585931		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000586765		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000590308		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000592991		ChiTaRS3.1			AV701771	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-3UTR	ENST00000406625	ENST00000373036		ChiTaRS3.1			BF379811	ASB3	chr2	54007425	+	MTF1	chr1	38277851	+
intron-intron	ENST00000406625	ENST00000468190		ChiTaRS3.1			BF379811	ASB3	chr2	54007425	+	MTF1	chr1	38277851	+
intron-3UTR	ENST00000498475	ENST00000373036		ChiTaRS3.1			BF379811	ASB3	chr2	54007425	+	MTF1	chr1	38277851	+
intron-intron	ENST00000498475	ENST00000468190		ChiTaRS3.1			BF379811	ASB3	chr2	54007425	+	MTF1	chr1	38277851	+
3UTR-3CDS	ENST00000374379	ENST00000527673		ChiTaRS3.1			BQ721711	CLIC4	chr1	25167568	+	RPS25	chr11	118888757	-
3UTR-3CDS	ENST00000374379	ENST00000528547		ChiTaRS3.1			BQ721711	CLIC4	chr1	25167568	+	RPS25	chr11	118888757	-
intron-3CDS	ENST00000497755	ENST00000527673		ChiTaRS3.1			BQ721711	CLIC4	chr1	25167568	+	RPS25	chr11	118888757	-
intron-3CDS	ENST00000497755	ENST00000528547		ChiTaRS3.1			BQ721711	CLIC4	chr1	25167568	+	RPS25	chr11	118888757	-
intron-intron	ENST00000326448	ENST00000378295		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000604074		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000354437		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000346387		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000357733		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000603362		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000604479		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378285		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378280		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378288		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378290		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378295		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000604074		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000354437		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000346387		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000357733		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000603362		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000604479		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378285		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378280		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378288		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378290		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378295		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000604074		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000354437		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000346387		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000357733		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000603362		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000604479		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378285		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378280		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378288		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378290		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378295		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000604074		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000354437		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000346387		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000357733		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000603362		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000604479		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378285		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378280		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378288		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378290		ChiTaRS3.1			CR740291	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000543376	ENST00000381567		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000543376	ENST00000467626		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000543376	ENST00000381566		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000432566	ENST00000381567		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000432566	ENST00000467626		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000432566	ENST00000381566		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000360553	ENST00000381567		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000360553	ENST00000467626		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000360553	ENST00000381566		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000359187	ENST00000381567		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000359187	ENST00000467626		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000359187	ENST00000381566		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000565885	ENST00000381567		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000565885	ENST00000467626		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-intron	ENST00000565885	ENST00000381566		ChiTaRS3.1			BC064341	GOLGA8A	chr15	34671597	-	CRLF2	chrY	1455254	-
intron-3UTR	ENST00000377069	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000377069	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000377069	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377069	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377069	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377069	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000542973	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000542973	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000542973	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000542973	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000542973	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000542973	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000377071	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000377071	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000377071	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377071	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377071	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000377071	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000536437	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000536437	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000536437	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000536437	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000536437	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000536437	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000538046	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000538046	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000538046	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000538046	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000538046	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000538046	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000543852	ENST00000377069		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000543852	ENST00000542973		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3UTR	ENST00000543852	ENST00000377071		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000543852	ENST00000536437		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000543852	ENST00000538046		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-intron	ENST00000543852	ENST00000543852		ChiTaRS3.1			CN344771	KDM2B	chr12	121867205	+	KDM2B	chr12	121867677	-
intron-3CDS	ENST00000356698	ENST00000263846		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000356698	ENST00000540677		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000356698	ENST00000539008		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000356698	ENST00000542836		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000356698	ENST00000542670		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000356698	ENST00000535826		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-intron	ENST00000356698	ENST00000540831		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000263846		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000540677		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000539008		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000542836		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000542670		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000368317	ENST00000535826		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-intron	ENST00000368317	ENST00000540831		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000263846		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000540677		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000539008		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000542836		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000542670		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000485757	ENST00000535826		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-intron	ENST00000485757	ENST00000540831		ChiTaRS3.1			BM679451	RSPO3	chr6	126965488	-	SYT7	chr11	61291366	+
intron-3CDS	ENST00000458236	ENST00000298552		ChiTaRS3.1			BF738281	HLA-F-AS1	chr6	1053779	-	TSC1	chr9	135804247	+
intron-3CDS	ENST00000458236	ENST00000545250		ChiTaRS3.1			BF738281	HLA-F-AS1	chr6	1053779	-	TSC1	chr9	135804247	+
intron-3CDS	ENST00000458236	ENST00000440111		ChiTaRS3.1			BF738281	HLA-F-AS1	chr6	1053779	-	TSC1	chr9	135804247	+
intron-3CDS	ENST00000458236	ENST00000403810		ChiTaRS3.1			BF738281	HLA-F-AS1	chr6	1053779	-	TSC1	chr9	135804247	+
intron-5UTR	ENST00000458236	ENST00000475903		ChiTaRS3.1			BF738281	HLA-F-AS1	chr6	1053779	-	TSC1	chr9	135804247	+
3UTR-3UTR	ENST00000369799	ENST00000295628		ChiTaRS3.1			DA647181	AHCYL1	chr1	110564963	+	LRRC58	chr3	120047390	-
intron-3UTR	ENST00000475081	ENST00000295628		ChiTaRS3.1			DA647181	AHCYL1	chr1	110564963	+	LRRC58	chr3	120047390	-
3UTR-3UTR	ENST00000359172	ENST00000295628		ChiTaRS3.1			DA647181	AHCYL1	chr1	110564963	+	LRRC58	chr3	120047390	-
intron-3UTR	ENST00000393614	ENST00000295628		ChiTaRS3.1			DA647181	AHCYL1	chr1	110564963	+	LRRC58	chr3	120047390	-
intron-intron	ENST00000490103	ENST00000266269		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000490103	ENST00000405309		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000490103	ENST00000351933		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000490103	ENST00000215919		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397871	ENST00000266269		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397871	ENST00000405309		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397871	ENST00000351933		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397871	ENST00000215919		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397872	ENST00000266269		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397872	ENST00000405309		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397872	ENST00000351933		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397872	ENST00000215919		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397873	ENST00000266269		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397873	ENST00000405309		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397873	ENST00000351933		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
intron-intron	ENST00000397873	ENST00000215919		ChiTaRS3.1			BF743471	THOC5	chr22	29935393	-	PATZ1	chr22	31735096	+
Frame-shit	ENST00000268379	ENST00000268379		ChiTaRS3.1			BF692871	UQCRC2	chr16	21983376	+	UQCRC2	chr16	21974105	+
Frame-shit	ENST00000268379	ENST00000561553		ChiTaRS3.1			BF692871	UQCRC2	chr16	21983376	+	UQCRC2	chr16	21974105	+
Frame-shit	ENST00000561553	ENST00000268379		ChiTaRS3.1			BF692871	UQCRC2	chr16	21983376	+	UQCRC2	chr16	21974105	+
Frame-shit	ENST00000561553	ENST00000561553		ChiTaRS3.1			BF692871	UQCRC2	chr16	21983376	+	UQCRC2	chr16	21974105	+
intron-intron	ENST00000266058	ENST00000361205		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000399848		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000359446		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000587757		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000585931		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000586765		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000590308		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000266058	ENST00000592991		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000361205		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000399848		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000359446		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000587757		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000585931		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000586765		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000590308		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371070	ENST00000592991		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000361205		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000399848		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000359446		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000587757		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000585931		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000586765		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000590308		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000371041	ENST00000592991		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000361205		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000399848		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000359446		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000587757		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000585931		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000586765		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000590308		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-intron	ENST00000456008	ENST00000592991		ChiTaRS3.1			T07341	SLIT1	chr10	98757874	+	LDLRAD4	chr18	13461923	+
intron-3UTR	ENST00000393432	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000393432	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000393432	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000393432	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000442819	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000442819	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000442819	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000442819	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000356731	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000356731	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000356731	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000356731	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000329433	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000329433	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000329433	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000329433	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000510411	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000510411	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000510411	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000510411	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000511300	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000511300	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000511300	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000511300	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000524180	ENST00000215912		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-3UTR	ENST00000524180	ENST00000441972		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000524180	ENST00000487265		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000524180	ENST00000402249		ChiTaRS3.1			BF987131	HNRNPH1	chr5	179046315	+	PIK3IP1	chr22	31678260	+
intron-intron	ENST00000379031	ENST00000354700		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000379031	ENST00000353662		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000379031	ENST00000379037		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000354700		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000353662		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000379037		ChiTaRS3.1			AK027721	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000511072	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000511072	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000442529	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378398	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000441472	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000378391	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000514189	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000270722	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400427		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400424		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000408910		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000408989		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
intron-intron	ENST00000512462	ENST00000400423		ChiTaRS3.1			EL582621	PRDM16	chr1	3063207	-	UMODL1	chr21	43542800	-
3UTR-5UTR	ENST00000371065	ENST00000371065		ChiTaRS3.1			CB140261	LEPROT	chr1	65898336	+	LEPROT	chr1	65886319	+
3UTR-intron	ENST00000371065	ENST00000484243		ChiTaRS3.1			CB140261	LEPROT	chr1	65898336	+	LEPROT	chr1	65886319	+
intron-5UTR	ENST00000484243	ENST00000371065		ChiTaRS3.1			CB140261	LEPROT	chr1	65898336	+	LEPROT	chr1	65886319	+
intron-intron	ENST00000484243	ENST00000484243		ChiTaRS3.1			CB140261	LEPROT	chr1	65898336	+	LEPROT	chr1	65886319	+
In-frame	ENST00000372811	ENST00000372811		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372811	ENST00000420632		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372811	ENST00000372809		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000372811	ENST00000480630		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000372811		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000420632		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000372809		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000420632	ENST00000480630		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000372811		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000420632		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000372809		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000372809	ENST00000480630		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000372811		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000420632		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000372809		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3UTR	ENST00000480630	ENST00000480630		ChiTaRS3.1			BF995041	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
intron-intron	ENST00000541742	ENST00000541742		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000541742	ENST00000490107		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000541742	ENST00000388985		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000541742	ENST00000366517		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000541742	ENST00000403792		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000490107	ENST00000541742		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000490107	ENST00000490107		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000490107	ENST00000388985		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000490107	ENST00000366517		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000490107	ENST00000403792		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000388985	ENST00000541742		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000388985	ENST00000490107		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000388985	ENST00000388985		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000388985	ENST00000366517		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000388985	ENST00000403792		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000366517	ENST00000541742		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000366517	ENST00000490107		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000366517	ENST00000388985		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000366517	ENST00000366517		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000366517	ENST00000403792		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000403792	ENST00000541742		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000403792	ENST00000490107		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000403792	ENST00000388985		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000403792	ENST00000366517		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
intron-intron	ENST00000403792	ENST00000403792		ChiTaRS3.1			BP419481	SMYD3	chr1	246479374	-	SMYD3	chr1	246480879	-
3UTR-intron	ENST00000415229	ENST00000367657		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000415229	ENST00000361833		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000415229	ENST00000367654		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000415229	ENST00000424564		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000415229	ENST00000281881		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000535727	ENST00000367657		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000535727	ENST00000361833		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000535727	ENST00000367654		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000535727	ENST00000424564		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000535727	ENST00000281881		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000301776	ENST00000367657		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000301776	ENST00000361833		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000301776	ENST00000367654		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000301776	ENST00000424564		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
3UTR-intron	ENST00000301776	ENST00000281881		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000528206	ENST00000367657		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000528206	ENST00000361833		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000528206	ENST00000367654		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000528206	ENST00000424564		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000528206	ENST00000281881		ChiTaRS3.1			AI990291	ASRGL1	chr11	62160549	-	ASTN1	chr1	176848695	+
intron-intron	ENST00000367006	ENST00000377765		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367006	ENST00000539465		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367006	ENST00000536622		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367006	ENST00000541302		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
5CDS-intron	ENST00000452621	ENST00000377765		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
5CDS-intron	ENST00000452621	ENST00000539465		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
5CDS-intron	ENST00000452621	ENST00000536622		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
5CDS-intron	ENST00000452621	ENST00000541302		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000419091	ENST00000377765		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000419091	ENST00000539465		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000419091	ENST00000536622		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000419091	ENST00000541302		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367005	ENST00000377765		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367005	ENST00000539465		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367005	ENST00000536622		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000367005	ENST00000541302		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000526255	ENST00000377765		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000526255	ENST00000539465		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000526255	ENST00000536622		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000526255	ENST00000541302		ChiTaRS3.1			BF091851	RCOR3	chr1	211486319	+	FRMPD1	chr9	37741757	-
intron-intron	ENST00000371657	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371657	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371657	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371657	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000396059	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000396059	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000396059	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000396059	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371674	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371674	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371674	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371674	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371677	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371677	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371677	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000371677	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000340309	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000340309	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000340309	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000340309	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000420027	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000420027	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000420027	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000420027	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000415862	ENST00000569795		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000415862	ENST00000413097		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000415862	ENST00000260376		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000415862	ENST00000287196		ChiTaRS3.1			BF799501	UBE2V1	chr20	48700707	+	PARP6	chr15	72563327	-
intron-intron	ENST00000415807	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000415807	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000336824	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000416957	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000392699	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000421757	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000423424	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000415807		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000336824		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000416957		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000392699		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000421757		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000423424		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000476794	ENST00000476794		ChiTaRS3.1			CV351051	FNDC3B	chr3	171920935	+	FNDC3B	chr3	171921023	-
intron-intron	ENST00000534894	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000534894	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000536810	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000545257	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355995	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000543371	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000355717	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000538897	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000349937	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369397	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000352065	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369395	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000542695	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369389	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000369386	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000604948		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000557565		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000250377		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000321130		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000534898		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000603544		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000605870		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-intron	ENST00000466338	ENST00000603588		ChiTaRS3.1			AW853851	TCF7L2	chr10	114856616	-	KIAA0391	chr14	35717012	-
intron-3CDS	ENST00000292114	ENST00000407690		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000292114	ENST00000407431		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000292114	ENST00000407148		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000292114	ENST00000405938		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-intron	ENST00000292114	ENST00000496523		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000509083	ENST00000407690		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000509083	ENST00000407431		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000509083	ENST00000407148		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000509083	ENST00000405938		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-intron	ENST00000509083	ENST00000496523		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000581386	ENST00000407690		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000581386	ENST00000407431		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000581386	ENST00000407148		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000581386	ENST00000405938		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-intron	ENST00000581386	ENST00000496523		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000395404	ENST00000407690		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000395404	ENST00000407431		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000395404	ENST00000407148		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-3CDS	ENST00000395404	ENST00000405938		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
intron-intron	ENST00000395404	ENST00000496523		ChiTaRS3.1			CB164301	TMEM199	chr17	26694750	+	TFIP11	chr22	26890230	-
In-frame	ENST00000552285	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000552285	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000552285	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000315970	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000315970	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000315970	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000439210	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000439210	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000439210	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000389146	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000389146	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389146	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-3CDS	ENST00000413095	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-3CDS	ENST00000413095	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000413095	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000551035	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000551035	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000551035	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-3CDS	ENST00000435406	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-3CDS	ENST00000435406	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-intron	ENST00000435406	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000257966	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000257966	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000257966	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000389142	ENST00000552285		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
In-frame	ENST00000389142	ENST00000315970		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000439210		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000389146		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000413095		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000551035		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000435406		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000257966		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
5CDS-intron	ENST00000389142	ENST00000389142		ChiTaRS3.1			AA037271	OS9	chr12	58089790	+	OS9	chr12	58088535	+
intron-3CDS	ENST00000593699	ENST00000268704		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-intron	ENST00000593699	ENST00000341316		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3UTR	ENST00000593699	ENST00000565891		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3CDS	ENST00000372499	ENST00000268704		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-intron	ENST00000372499	ENST00000341316		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3UTR	ENST00000372499	ENST00000565891		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3CDS	ENST00000496424	ENST00000268704		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-intron	ENST00000496424	ENST00000341316		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3UTR	ENST00000496424	ENST00000565891		ChiTaRS3.1			BE817691	C10orf11	chr10	77793741	+	SPG7	chr16	89623312	+
intron-3UTR	ENST00000561648	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000561648	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000561648	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000561648	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000561648	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000561648	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000561648	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000563137	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000563137	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562871	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000562871	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000262383	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000262383	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000535559	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000535559	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000567169	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000567169	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000561648		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000563137		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000562871		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000262383		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000535559		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-3UTR	ENST00000562520	ENST00000567169		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000562520	ENST00000562520		ChiTaRS3.1			CN287451	ZNF423	chr16	49524640	+	ZNF423	chr16	49525128	-
intron-intron	ENST00000580974	ENST00000580974		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000580974	ENST00000299954		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000580974	ENST00000335257		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000580974	ENST00000581322		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000299954	ENST00000580974		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000299954	ENST00000299954		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000299954	ENST00000335257		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000299954	ENST00000581322		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000335257	ENST00000580974		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000335257	ENST00000299954		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000335257	ENST00000335257		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000335257	ENST00000581322		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000581322	ENST00000580974		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000581322	ENST00000299954		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000581322	ENST00000335257		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-intron	ENST00000581322	ENST00000581322		ChiTaRS3.1			AW935131	PITPNC1	chr17	65395394	-	PITPNC1	chr17	65429577	-
intron-3UTR	ENST00000283928	ENST00000244020		ChiTaRS3.1			AK123171	JAZF1	chr7	28004473	-	SRSF6	chr20	42091048	+
intron-3UTR	ENST00000466516	ENST00000244020		ChiTaRS3.1			AK123171	JAZF1	chr7	28004473	-	SRSF6	chr20	42091048	+
intron-3CDS	ENST00000318607	ENST00000318607		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000318607	ENST00000519004		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000318607	ENST00000522387		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-5UTR	ENST00000318607	ENST00000519596		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519004	ENST00000318607		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519004	ENST00000519004		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519004	ENST00000522387		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-5UTR	ENST00000519004	ENST00000519596		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000522387	ENST00000318607		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000522387	ENST00000519004		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000522387	ENST00000522387		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-5UTR	ENST00000522387	ENST00000519596		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519596	ENST00000318607		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519596	ENST00000519004		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-3CDS	ENST00000519596	ENST00000522387		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
intron-5UTR	ENST00000519596	ENST00000519596		ChiTaRS3.1			BF087781	PABPC1	chr8	101719216	+	PABPC1	chr8	101721787	-
3UTR-3UTR	ENST00000245304	ENST00000238855		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-3UTR	ENST00000245304	ENST00000422803		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-3UTR	ENST00000245304	ENST00000238856		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-intron	ENST00000245304	ENST00000409933		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-intron	ENST00000245304	ENST00000409183		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-intron	ENST00000245304	ENST00000487769		ChiTaRS3.1			BE178971	RAP2A	chr13	98117919	-	AFTPH	chr2	64819583	-
3UTR-intron	ENST00000536985	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000536985	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379789	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000540253	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000317350	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379785	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000379782	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-intron	ENST00000360521	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000300853		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000423698		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000588738		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000340192		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000591636		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000589165		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
3UTR-intron	ENST00000379775	ENST00000013807		ChiTaRS3.1			BG926621	PFKFB3	chr10	6276796	+	ERCC1	chr19	45978380	+
intron-3UTR	ENST00000390394	ENST00000589222		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000407086		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000390652		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000408905		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000588462		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-intron	ENST00000390394	ENST00000585744		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000588874		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000390394	ENST00000585812		ChiTaRS3.1			BF755861	TRBV20-1	chr16	1988609	+	BCAS3	chr17	59470058	+
intron-3UTR	ENST00000343882	ENST00000345097		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000343882	ENST00000261302		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000343882	ENST00000557258		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000343882	ENST00000555353		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000343882	ENST00000555658		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000406360	ENST00000345097		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000406360	ENST00000261302		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000406360	ENST00000557258		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000406360	ENST00000555353		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000406360	ENST00000555658		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000540898	ENST00000345097		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000540898	ENST00000261302		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000540898	ENST00000557258		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000540898	ENST00000555353		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-intron	ENST00000540898	ENST00000555658		ChiTaRS3.1			AK123151	FOXO3	chr6	108941819	+	FOXN3	chr14	89622792	-
intron-3UTR	ENST00000558518	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000558518	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558518	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558518	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558518	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558518	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000557933	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000557933	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000557933	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000557933	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000557933	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000557933	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000455727	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000455727	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000455727	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000455727	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000455727	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000455727	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000535915	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000535915	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000535915	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000535915	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000535915	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000535915	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000545707	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000545707	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000545707	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000545707	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000545707	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000545707	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000558013	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000558013	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558013	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558013	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558013	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000558013	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000560628	ENST00000268251		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-3UTR	ENST00000560628	ENST00000396600		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000560628	ENST00000563215		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000560628	ENST00000567812		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000560628	ENST00000425191		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
intron-intron	ENST00000560628	ENST00000569156		ChiTaRS3.1			AA002171	LDLR	chr19	11244309	-	ABAT	chr16	8877972	-
5CDS-intron	ENST00000568223	ENST00000360284		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568223	ENST00000545748		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568223	ENST00000550082		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568223	ENST00000547206		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568223	ENST00000243050		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568223	ENST00000394825		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568223	ENST00000394824		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568223	ENST00000548232		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568415	ENST00000360284		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568415	ENST00000545748		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568415	ENST00000550082		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568415	ENST00000547206		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568415	ENST00000243050		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568415	ENST00000394825		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-3UTR	ENST00000568415	ENST00000394824		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
5CDS-intron	ENST00000568415	ENST00000548232		ChiTaRS3.1			BM998971	METRN	chr16	767090	-	NR4A1	chr12	52452911	+
In-frame	ENST00000229795	ENST00000229795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000229795	ENST00000229794		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000229795	ENST00000468133		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000229795	ENST00000310795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000229794	ENST00000229795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000229794	ENST00000229794		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000229794	ENST00000468133		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000229794	ENST00000310795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000468133	ENST00000229795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000468133	ENST00000229794		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000468133	ENST00000468133		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000468133	ENST00000310795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000310795	ENST00000229795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000310795	ENST00000229794		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
Frame-shit	ENST00000310795	ENST00000468133		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
In-frame	ENST00000310795	ENST00000310795		ChiTaRS3.1			BF183021	MAPK14	chr6	36075265	-	MAPK14	chr6	36075319	+
3UTR-3UTR	ENST00000411948	ENST00000411948		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-intron	ENST00000411948	ENST00000366528		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-3UTR	ENST00000411948	ENST00000498262		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-3UTR	ENST00000366528	ENST00000411948		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-intron	ENST00000366528	ENST00000366528		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-3UTR	ENST00000366528	ENST00000498262		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-3UTR	ENST00000498262	ENST00000411948		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-intron	ENST00000498262	ENST00000366528		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
3UTR-3UTR	ENST00000498262	ENST00000498262		ChiTaRS3.1			AA837631	COX20	chr1	245006504	-	COX20	chr1	245006571	+
intron-intron	ENST00000261667	ENST00000354725		ChiTaRS3.1			BE180861	KPNA3	chr13	50275486	-	SND1	chr7	127618566	-
intron-intron	ENST00000261667	ENST00000467238		ChiTaRS3.1			BE180861	KPNA3	chr13	50275486	-	SND1	chr7	127618566	-
Frame-shit	ENST00000359904	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000359904	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000359904	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000359904	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000580753	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000580753	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000580753	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000580753	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000392720	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000392720	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000392720	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000392720	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000359783	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000359783	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000359783	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000359783	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577866	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577866	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577866	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000577866	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000585050	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000585050	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000585050	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-intron	ENST00000585050	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577985	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577985	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
Frame-shit	ENST00000577985	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
5CDS-intron	ENST00000577985	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000577273	ENST00000265565		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000577273	ENST00000441517		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-3CDS	ENST00000577273	ENST00000545718		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-intron	ENST00000577273	ENST00000465628		ChiTaRS3.1			BG254511	AMZ2	chr17	66251930	+	SCAP	chr3	47455468	-
intron-intron	ENST00000559565	ENST00000369717		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000369716		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000241356		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000486342		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000369717		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000369716		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000241356		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000486342		ChiTaRS3.1			AF226731	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000507810	ENST00000507810		ChiTaRS3.1			N22681	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000507810	ENST00000261486		ChiTaRS3.1			N22681	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000261486	ENST00000507810		ChiTaRS3.1			N22681	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000261486	ENST00000261486		ChiTaRS3.1			N22681	EPB41L4A	chr5	111567247	+	EPB41L4A	chr5	111560064	+
intron-intron	ENST00000381668	ENST00000381668		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000381668	ENST00000264449		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000381668	ENST00000510289		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000264449	ENST00000381668		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000264449	ENST00000264449		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000264449	ENST00000510289		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000510289	ENST00000381668		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000510289	ENST00000264449		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000510289	ENST00000510289		ChiTaRS3.1			AA740981	ATP8A1	chr4	42424196	+	ATP8A1	chr4	42422050	+
intron-intron	ENST00000471595	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000471595		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000478469		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000251654		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000483687		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000490504		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000466072		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000482086		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000468777		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000462637		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000469217		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000474833		ChiTaRS3.1			BM873521	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-3UTR	ENST00000316399	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000316399	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000316399	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000316399	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000396356	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000396356	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000352083	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000352083	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528252	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000528252	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000527619	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000527619	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000528429	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000528429	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000602624		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000375048		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-3UTR	ENST00000533658	ENST00000415136		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
intron-intron	ENST00000533658	ENST00000477229		ChiTaRS3.1			AW411241	SOX6	chr11	16249490	+	DDOST	chr1	20978812	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AA577941	MALAT1	chr11	65270528	+	MALAT1	chr11	65270428	-
intron-intron	ENST00000318560	ENST00000355387		ChiTaRS3.1			H71251	ABL1	chr9	133680495	+	RNF220	chr1	44937055	+
intron-intron	ENST00000318560	ENST00000361799		ChiTaRS3.1			H71251	ABL1	chr9	133680495	+	RNF220	chr1	44937055	+
intron-intron	ENST00000318560	ENST00000372247		ChiTaRS3.1			H71251	ABL1	chr9	133680495	+	RNF220	chr1	44937055	+
intron-intron	ENST00000318560	ENST00000443020		ChiTaRS3.1			H71251	ABL1	chr9	133680495	+	RNF220	chr1	44937055	+
intron-intron	ENST00000318560	ENST00000480686		ChiTaRS3.1			H71251	ABL1	chr9	133680495	+	RNF220	chr1	44937055	+
3UTR-3UTR	ENST00000264933	ENST00000264933		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000264933	ENST00000505221		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-intron	ENST00000264933	ENST00000509581		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000264933	ENST00000507528		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000264933	ENST00000511482		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000505221	ENST00000264933		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000505221	ENST00000505221		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-intron	ENST00000505221	ENST00000509581		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000505221	ENST00000507528		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000505221	ENST00000511482		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-3UTR	ENST00000509581	ENST00000264933		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-3UTR	ENST00000509581	ENST00000505221		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-intron	ENST00000509581	ENST00000509581		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-3UTR	ENST00000509581	ENST00000507528		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-3UTR	ENST00000509581	ENST00000511482		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000507528	ENST00000264933		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000507528	ENST00000505221		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-intron	ENST00000507528	ENST00000509581		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000507528	ENST00000507528		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000507528	ENST00000511482		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000511482	ENST00000264933		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000511482	ENST00000505221		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-intron	ENST00000511482	ENST00000509581		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000511482	ENST00000507528		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
3UTR-3UTR	ENST00000511482	ENST00000511482		ChiTaRS3.1			BU608571	PDCD6	chr5	314810	-	PDCD6	chr5	314775	+
intron-intron	ENST00000374706	ENST00000374706		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374706	ENST00000265375		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374706	ENST00000339497		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374706	ENST00000374704		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374706	ENST00000492478		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000265375	ENST00000374706		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000265375	ENST00000265375		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000265375	ENST00000339497		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000265375	ENST00000374704		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000265375	ENST00000492478		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000339497	ENST00000374706		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000339497	ENST00000265375		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000339497	ENST00000339497		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000339497	ENST00000374704		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000339497	ENST00000492478		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374704	ENST00000374706		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374704	ENST00000265375		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374704	ENST00000339497		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374704	ENST00000374704		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000374704	ENST00000492478		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000492478	ENST00000374706		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000492478	ENST00000265375		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000492478	ENST00000339497		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000492478	ENST00000374704		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
intron-intron	ENST00000492478	ENST00000492478		ChiTaRS3.1			AW856961	CCNY	chr10	35705279	-	CCNY	chr10	35742118	-
Frame-shit	ENST00000314797	ENST00000314797		ChiTaRS3.1			BQ316921	COPG1	chr3	128984567	+	COPG1	chr3	128984615	-
intron-intron	ENST00000330175	ENST00000336314		ChiTaRS3.1			AI636681	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503131	ENST00000336314		ChiTaRS3.1			AI636681	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503734	ENST00000336314		ChiTaRS3.1			AI636681	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
Frame-shit	ENST00000334179	ENST00000329276		ChiTaRS3.1			DB044831	UBL4B	chr1	110655501	+	NOP56	chr20	2635553	+
5CDS-intron	ENST00000334179	ENST00000492135		ChiTaRS3.1			DB044831	UBL4B	chr1	110655501	+	NOP56	chr20	2635553	+
Frame-shit	ENST00000262077	ENST00000262077		ChiTaRS3.1			BP352751	NUP153	chr6	17624791	-	NUP153	chr6	17649531	-
Frame-shit	ENST00000262077	ENST00000537253		ChiTaRS3.1			BP352751	NUP153	chr6	17624791	-	NUP153	chr6	17649531	-
Frame-shit	ENST00000537253	ENST00000262077		ChiTaRS3.1			BP352751	NUP153	chr6	17624791	-	NUP153	chr6	17649531	-
Frame-shit	ENST00000537253	ENST00000537253		ChiTaRS3.1			BP352751	NUP153	chr6	17624791	-	NUP153	chr6	17649531	-
intron-3CDS	ENST00000263805	ENST00000186436		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-intron	ENST00000263805	ENST00000425805		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-3CDS	ENST00000565380	ENST00000186436		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-intron	ENST00000565380	ENST00000425805		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-3CDS	ENST00000565611	ENST00000186436		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-intron	ENST00000565611	ENST00000425805		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-3CDS	ENST00000565660	ENST00000186436		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
intron-intron	ENST00000565660	ENST00000425805		ChiTaRS3.1			BF817901	ZNF106	chr15	42731932	+	TMEM131	chr2	98426203	-
5CDS-intron	ENST00000332050	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332050	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000397938	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000406548	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000331029	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000414183	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000333395	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398907		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398905		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000288319		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398897		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398911		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398910		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000417133		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000442448		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000453032		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000398919		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000429727		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
5CDS-intron	ENST00000332035	ENST00000485493		ChiTaRS3.1			S70579	EWSR1	chr22	29683123	+	ERG	chr21	39764366	-
intron-intron	ENST00000321394	ENST00000530927		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000321394	ENST00000380815		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000321394	ENST00000467288		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000544255	ENST00000530927		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000544255	ENST00000380815		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000544255	ENST00000467288		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000420894	ENST00000530927		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000420894	ENST00000380815		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000420894	ENST00000467288		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000392168	ENST00000530927		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000392168	ENST00000380815		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000392168	ENST00000467288		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000546023	ENST00000530927		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000546023	ENST00000380815		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000546023	ENST00000467288		ChiTaRS3.1			AW375751	TCP1	chr6	160201533	+	GMDS	chr6	1698685	-
intron-intron	ENST00000449264	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000449264	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000445232	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000376122	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000420425	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000448781	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000383496	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-intron	ENST00000412275	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000449264		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000445232		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000376122		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000420425		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000448781		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000383496		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000412275		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
5CDS-intron	ENST00000443707	ENST00000443707		ChiTaRS3.1			AI880081	TNF	chr6	2875798	+	TNF	chr6	2875461	-
intron-3UTR	ENST00000331925	ENST00000248879		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000331925	ENST00000405465		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000573283	ENST00000248879		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000573283	ENST00000405465		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000575842	ENST00000248879		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000575842	ENST00000405465		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000575087	ENST00000248879		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
intron-3UTR	ENST00000575087	ENST00000405465		ChiTaRS3.1			CN257271	ACTG1	chr17	79478953	-	DGCR6L	chr22	20301849	-
Frame-shit	ENST00000446160	ENST00000389153		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000446160	ENST00000608853		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000446160	ENST00000377617		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000446160	ENST00000550104		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000446160	ENST00000542287		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000446160	ENST00000535949		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
5CDS-intron	ENST00000446160	ENST00000549455		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000389153		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000608853		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000377617		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000550104		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000542287		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000383050	ENST00000535949		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
5CDS-intron	ENST00000383050	ENST00000549455		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000389153		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000608853		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000377617		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000550104		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000542287		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
Frame-shit	ENST00000462519	ENST00000535949		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
5CDS-intron	ENST00000462519	ENST00000549455		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000389153		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000608853		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000377617		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000550104		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000542287		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-3CDS	ENST00000473672	ENST00000535949		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-intron	ENST00000473672	ENST00000549455		ChiTaRS3.1			DB215951	ANKUB1	chr3	149508567	-	ATXN2	chr12	111956233	-
intron-intron	ENST00000199447	ENST00000199447		ChiTaRS3.1			BI027021	NME8	chr7	37772396	+	NME8	chr7	37772431	-
intron-intron	ENST00000199447	ENST00000440017		ChiTaRS3.1			BI027021	NME8	chr7	37772396	+	NME8	chr7	37772431	-
intron-intron	ENST00000440017	ENST00000199447		ChiTaRS3.1			BI027021	NME8	chr7	37772396	+	NME8	chr7	37772431	-
intron-intron	ENST00000440017	ENST00000440017		ChiTaRS3.1			BI027021	NME8	chr7	37772396	+	NME8	chr7	37772431	-
Frame-shit	ENST00000310394	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000310394	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000395473	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000395473	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000302228	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000302228	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
In-frame	ENST00000313648	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
In-frame	ENST00000313648	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000413914	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
Frame-shit	ENST00000413914	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
intron-3CDS	ENST00000448970	ENST00000423676		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
intron-3CDS	ENST00000448970	ENST00000324290		ChiTaRS3.1			BG980811	LGALS9	chr17	25975890	+	LGALS9B	chr17	20355127	+
intron-intron	ENST00000399916	ENST00000596019		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000397162		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000397165		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000358523		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000595736		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000597972		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000593468		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000399916	ENST00000599240		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000596019		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000397162		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000397165		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000358523		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000595736		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000597972		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000593468		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000308873	ENST00000599240		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000596019		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000397162		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000397165		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000358523		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000595736		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000597972		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000593468		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000338888	ENST00000599240		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000596019		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000397162		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000397165		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000358523		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000595736		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000597972		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000593468		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000540420	ENST00000599240		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000596019		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000397162		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000397165		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000358523		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000595736		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000597972		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000593468		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-intron	ENST00000496967	ENST00000599240		ChiTaRS3.1			AW868551	RUNX3	chr1	25225191	-	ZNF682	chr19	20133777	-
intron-3CDS	ENST00000330597	ENST00000371464		ChiTaRS3.1			AI207681	HBG1	chr11	5275680	+	RBP4	chr10	95351861	-
intron-3CDS	ENST00000330597	ENST00000371467		ChiTaRS3.1			AI207681	HBG1	chr11	5275680	+	RBP4	chr10	95351861	-
intron-3CDS	ENST00000330597	ENST00000371469		ChiTaRS3.1			AI207681	HBG1	chr11	5275680	+	RBP4	chr10	95351861	-
3UTR-3UTR	ENST00000577702	ENST00000577702		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
3UTR-3UTR	ENST00000577702	ENST00000310827		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
3UTR-intron	ENST00000577702	ENST00000431926		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
3UTR-intron	ENST00000577702	ENST00000415273		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-3UTR	ENST00000310827	ENST00000577702		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-3UTR	ENST00000310827	ENST00000310827		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-intron	ENST00000310827	ENST00000431926		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-intron	ENST00000310827	ENST00000415273		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
intron-3UTR	ENST00000431926	ENST00000577702		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
intron-3UTR	ENST00000431926	ENST00000310827		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
intron-intron	ENST00000431926	ENST00000431926		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
intron-intron	ENST00000431926	ENST00000415273		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-3UTR	ENST00000415273	ENST00000577702		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-3UTR	ENST00000415273	ENST00000310827		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-intron	ENST00000415273	ENST00000431926		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
5CDS-intron	ENST00000415273	ENST00000415273		ChiTaRS3.1			BI031911	DCAF7	chr17	61662607	+	DCAF7	chr17	61660904	-
intron-intron	ENST00000261973	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000261973	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000261973	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000261973	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000261973	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000261973	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000540173	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000527432	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000525321	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000526754	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000562787		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000440851		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000219172		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000564817		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000562947		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000532483	ENST00000445712		ChiTaRS3.1			BI029781	RBM25	chr14	73554901	-	CENPT	chr16	67877641	-
intron-intron	ENST00000340855	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000340855	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000340855	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000340855	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000340855	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000340855	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000537071	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000541269	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000422081	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370441	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000490775	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000370443	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000427113	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000338086		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000319801		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000361078		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000536417		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000403432		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-intron	ENST00000428056	ENST00000420234		ChiTaRS3.1			BF059161	IDS	chrX	148560598	+	PUM2	chr2	20493460	+
intron-3CDS	ENST00000398519	ENST00000421182		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000357867		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000323926		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000336916		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000354785		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000357009		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000346544		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000345488		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000359671		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000446046		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000443816		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000432072		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000398519	ENST00000356005		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000398519	ENST00000490833		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000398519	ENST00000426059		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000421182		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000357867		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000323926		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000336916		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000354785		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000357009		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000346544		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000345488		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000359671		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000446046		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000443816		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000432072		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000314028	ENST00000356005		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000314028	ENST00000490833		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000314028	ENST00000426059		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000421182		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000357867		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000323926		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000336916		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000354785		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000357009		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000346544		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000345488		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000359671		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000446046		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000443816		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000432072		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000392334	ENST00000356005		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000392334	ENST00000490833		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000392334	ENST00000426059		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000421182		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000357867		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000323926		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000336916		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000354785		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000357009		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000346544		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000345488		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000359671		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000446046		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000443816		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000432072		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-3CDS	ENST00000578904	ENST00000356005		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000578904	ENST00000490833		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000578904	ENST00000426059		ChiTaRS3.1			BE812971	CSNK1D	chr17	80224474	+	FN1	chr2	216274400	+
intron-intron	ENST00000371754	ENST00000371754		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000371754	ENST00000469991		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000371754	ENST00000371752		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000371754	ENST00000396105		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000469991	ENST00000371754		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000469991	ENST00000469991		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000469991	ENST00000371752		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000469991	ENST00000396105		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000371752	ENST00000371754		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000371752	ENST00000469991		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000371752	ENST00000371752		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000371752	ENST00000396105		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000396105	ENST00000371754		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-intron	ENST00000396105	ENST00000469991		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000396105	ENST00000371752		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000396105	ENST00000396105		ChiTaRS3.1			BU607651	ZNFX1	chr20	47862668	+	ZNFX1	chr20	47862865	-
intron-3UTR	ENST00000367255	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000367255	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000356820	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000356820	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000423061	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000423061	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000448038	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000448038	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000341594	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000341594	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000265368	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000265368	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000367253	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000367253	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000367248	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000367248	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000413186	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000413186	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000466159	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000466159	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000539504	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000539504	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000347037	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000347037	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000354674	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000354674	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000495090	ENST00000380599		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000495090	ENST00000311403		ChiTaRS3.1			BM725571	SYNE1	chr6	152456253	-	ZBTB4	chr17	7363666	-
intron-3UTR	ENST00000265734	ENST00000265734		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000265734	ENST00000424848		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000265734	ENST00000491250		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-3UTR	ENST00000424848	ENST00000265734		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000424848	ENST00000424848		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000424848	ENST00000491250		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-3UTR	ENST00000491250	ENST00000265734		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000491250	ENST00000424848		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-intron	ENST00000491250	ENST00000491250		ChiTaRS3.1			BE895751	CDK6	chr7	92236558	+	CDK6	chr7	92236483	-
intron-5UTR	ENST00000315869	ENST00000358632		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-5UTR	ENST00000315869	ENST00000268053		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-5UTR	ENST00000315869	ENST00000419019		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-intron	ENST00000315869	ENST00000541301		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-intron	ENST00000315869	ENST00000467407		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-5UTR	ENST00000487451	ENST00000358632		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-5UTR	ENST00000487451	ENST00000268053		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-5UTR	ENST00000487451	ENST00000419019		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-intron	ENST00000487451	ENST00000541301		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
intron-intron	ENST00000487451	ENST00000467407		ChiTaRS3.1			AA368421	TFE3	chrX	48891263	+	CYP11A1	chr15	74637560	+
5CDS-3UTR	ENST00000369317	ENST00000305747		ChiTaRS3.1			AW601881	TXNIP	chr1	145440113	-	CERS6	chr2	169629012	+
5CDS-3UTR	ENST00000369317	ENST00000392687		ChiTaRS3.1			AW601881	TXNIP	chr1	145440113	-	CERS6	chr2	169629012	+
intron-3UTR	ENST00000475171	ENST00000305747		ChiTaRS3.1			AW601881	TXNIP	chr1	145440113	-	CERS6	chr2	169629012	+
intron-3UTR	ENST00000475171	ENST00000392687		ChiTaRS3.1			AW601881	TXNIP	chr1	145440113	-	CERS6	chr2	169629012	+
intron-intron	ENST00000421812	ENST00000421812		ChiTaRS3.1			BG958411	ZNF697	chr1	120189406	+	ZNF697	chr1	120188987	-
3UTR-intron	ENST00000264474	ENST00000258484		ChiTaRS3.1			BE716971	CSTA	chr3	122060458	+	EPC2	chr2	149528956	-
3UTR-intron	ENST00000264474	ENST00000409654		ChiTaRS3.1			BE716971	CSTA	chr3	122060458	+	EPC2	chr2	149528956	-
intron-intron	ENST00000479204	ENST00000258484		ChiTaRS3.1			BE716971	CSTA	chr3	122060458	+	EPC2	chr2	149528956	-
intron-intron	ENST00000479204	ENST00000409654		ChiTaRS3.1			BE716971	CSTA	chr3	122060458	+	EPC2	chr2	149528956	-
intron-intron	ENST00000454300	ENST00000359236		ChiTaRS3.1			BF845241	TANC1	chr2	159916745	-	VSIG10	chr12	118513473	-
intron-intron	ENST00000454300	ENST00000536905		ChiTaRS3.1			BF845241	TANC1	chr2	159916745	-	VSIG10	chr12	118513473	-
intron-intron	ENST00000263635	ENST00000359236		ChiTaRS3.1			BF845241	TANC1	chr2	159916745	-	VSIG10	chr12	118513473	-
intron-intron	ENST00000263635	ENST00000536905		ChiTaRS3.1			BF845241	TANC1	chr2	159916745	-	VSIG10	chr12	118513473	-
In-frame	ENST00000356805	ENST00000319023		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
In-frame	ENST00000356805	ENST00000539574		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
In-frame	ENST00000356805	ENST00000530055		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
5CDS-intron	ENST00000356805	ENST00000526039		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
In-frame	ENST00000333896	ENST00000319023		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
In-frame	ENST00000333896	ENST00000539574		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
In-frame	ENST00000333896	ENST00000530055		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
5CDS-intron	ENST00000333896	ENST00000526039		ChiTaRS3.1			BI047811	SPTBN1	chr2	54876769	-	NADSYN1	chr11	71208614	+
intron-5UTR	ENST00000267103	ENST00000267103		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000267103	ENST00000548632		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000267103	ENST00000549488		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-5UTR	ENST00000548632	ENST00000267103		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000548632	ENST00000548632		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000548632	ENST00000549488		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-5UTR	ENST00000549488	ENST00000267103		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000549488	ENST00000548632		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000549488	ENST00000549488		ChiTaRS3.1			CB046471	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-3CDS	ENST00000478253	ENST00000478253		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-3CDS	ENST00000478253	ENST00000295962		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-intron	ENST00000478253	ENST00000480457		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-3CDS	ENST00000295962	ENST00000478253		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-3CDS	ENST00000295962	ENST00000295962		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-intron	ENST00000295962	ENST00000480457		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-3CDS	ENST00000480457	ENST00000478253		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-3CDS	ENST00000480457	ENST00000295962		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
intron-intron	ENST00000480457	ENST00000480457		ChiTaRS3.1			W26811	ABHD6	chr3	58260382	-	ABHD6	chr3	58252993	+
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893511	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000338910	ENST00000331161		ChiTaRS3.1			BM722311	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000338910	ENST00000376363		ChiTaRS3.1			BM722311	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000497722	ENST00000331161		ChiTaRS3.1			BM722311	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000497722	ENST00000376363		ChiTaRS3.1			BM722311	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
Frame-shit	ENST00000264010	ENST00000264010		ChiTaRS3.1			BF897891	CTCF	chr16	67645185	+	CTCF	chr16	67645028	-
5CDS-intron	ENST00000264010	ENST00000401394		ChiTaRS3.1			BF897891	CTCF	chr16	67645185	+	CTCF	chr16	67645028	-
intron-3CDS	ENST00000401394	ENST00000264010		ChiTaRS3.1			BF897891	CTCF	chr16	67645185	+	CTCF	chr16	67645028	-
intron-intron	ENST00000401394	ENST00000401394		ChiTaRS3.1			BF897891	CTCF	chr16	67645185	+	CTCF	chr16	67645028	-
intron-intron	ENST00000375258	ENST00000202677		ChiTaRS3.1			BQ314021	METTL8	chr2	172175057	+	RALGAPA2	chr20	20425170	-
intron-intron	ENST00000375258	ENST00000495793		ChiTaRS3.1			BQ314021	METTL8	chr2	172175057	+	RALGAPA2	chr20	20425170	-
intron-intron	ENST00000463392	ENST00000202677		ChiTaRS3.1			BQ314021	METTL8	chr2	172175057	+	RALGAPA2	chr20	20425170	-
intron-intron	ENST00000463392	ENST00000495793		ChiTaRS3.1			BQ314021	METTL8	chr2	172175057	+	RALGAPA2	chr20	20425170	-
intron-intron	ENST00000327040	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000327040	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000327040	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000327040	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000327040	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000440756	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000440756	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000440756	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000440756	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000440756	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000286485	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000286485	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000286485	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000286485	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000286485	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000428502	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000428502	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000428502	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000428502	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000428502	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000523619	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000523619	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000523619	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000523619	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000523619	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000520789	ENST00000455502		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000520789	ENST00000248572		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000520789	ENST00000429473		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000520789	ENST00000430875		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
intron-intron	ENST00000520789	ENST00000428834		ChiTaRS3.1			X93851	PSD3	chr8	18441287	-	GNGT1	chr7	93346824	+
3UTR-3UTR	ENST00000394885	ENST00000394885		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000394885	ENST00000320963		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000394885	ENST00000394883		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000320963	ENST00000394885		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000320963	ENST00000320963		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000320963	ENST00000394883		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000394883	ENST00000394885		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000394883	ENST00000320963		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
3UTR-3UTR	ENST00000394883	ENST00000394883		ChiTaRS3.1			AW150981	RCN2	chr15	77242032	-	RCN2	chr15	77241945	+
5CDS-5UTR	ENST00000354725	ENST00000241651		ChiTaRS3.1			BF309401	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-5UTR	ENST00000467238	ENST00000241651		ChiTaRS3.1			BF309401	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-3UTR	ENST00000341217	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000341217	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000341217	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000581407	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000581407	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581407	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000582266	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000582266	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582266	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000452648	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000452648	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000452648	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000582059	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000582059	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000582059	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000583953	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000583953	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583953	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000577682	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000577682	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000577682	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000583522	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000583522	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000583522	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000581381	ENST00000341217		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-3UTR	ENST00000581381	ENST00000581407		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000582266		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000452648		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000582059		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000583953		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000577682		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000583522		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
intron-intron	ENST00000581381	ENST00000581381		ChiTaRS3.1			CB852091	FAM222B	chr17	27084125	+	FAM222B	chr17	27083809	-
3UTR-3UTR	ENST00000239938	ENST00000239938		ChiTaRS3.1			AA809191	EGR1	chr5	137804114	+	EGR1	chr5	137804076	-
intron-intron	ENST00000261778	ENST00000322122		ChiTaRS3.1			AA330301	TANGO6	chr16	68898189	+	TRIM72	chr16	31237404	+
intron-intron	ENST00000561931	ENST00000322122		ChiTaRS3.1			AA330301	TANGO6	chr16	68898189	+	TRIM72	chr16	31237404	+
5CDS-intron	ENST00000415609	ENST00000415609		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000415609	ENST00000349511		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000415609	ENST00000361055		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000415609	ENST00000540295		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000349511	ENST00000415609		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000349511	ENST00000349511		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000349511	ENST00000361055		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000349511	ENST00000540295		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000361055	ENST00000415609		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000361055	ENST00000349511		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000361055	ENST00000361055		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5CDS-intron	ENST00000361055	ENST00000540295		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5UTR-intron	ENST00000540295	ENST00000415609		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5UTR-intron	ENST00000540295	ENST00000349511		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5UTR-intron	ENST00000540295	ENST00000361055		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
5UTR-intron	ENST00000540295	ENST00000540295		ChiTaRS3.1			AW590921	UBA3	chr3	69126954	-	UBA3	chr3	69113219	+
intron-intron	ENST00000378707	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378707	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378707	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378707	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000359836	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000359836	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000359836	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000359836	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000541735	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000541735	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000541735	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000541735	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000343523	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000343523	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000343523	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000343523	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378677	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378677	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378677	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378677	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000357033	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000357033	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000357033	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000357033	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000474231	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000474231	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000474231	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000474231	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378723	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378723	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378723	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378723	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378702	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378702	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378702	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378702	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000361471	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000361471	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000361471	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000361471	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378680	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378680	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378680	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000378680	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000288447	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000288447	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000288447	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000288447	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000445312	ENST00000448637		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000445312	ENST00000312675		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000445312	ENST00000543006		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
intron-intron	ENST00000445312	ENST00000471917		ChiTaRS3.1			H27701	DMD	chrX	31139623	-	LPP	chr3	188302347	+
3UTR-3UTR	ENST00000313949	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000313949	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000313949	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000313949	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000313949	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371098	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371098	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371098	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371098	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371098	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000371075	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000371075	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000371075	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000371075	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000371075	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371100	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371100	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371100	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371100	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371100	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371099	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371099	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371099	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371099	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371099	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371102	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371102	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371102	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371102	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371102	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000464624	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000464624	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000464624	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-3UTR	ENST00000464624	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
3UTR-intron	ENST00000464624	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000306120	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000306120	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000306120	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000306120	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000306120	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371095	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371095	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371095	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371095	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371095	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371085	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371085	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371085	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000371085	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000371085	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000354359	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000354359	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000354359	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000354359	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000354359	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000265620	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000265620	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000265620	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000265620	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000265620	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000306090	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000306090	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000306090	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-3UTR	ENST00000306090	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
5CDS-intron	ENST00000306090	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371081	ENST00000313949		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371098		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371081	ENST00000371075		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371081	ENST00000371100		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371099		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371102		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-3UTR	ENST00000371081	ENST00000464624		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000306120		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371095		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371085		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000354359		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000265620		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000306090		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
intron-intron	ENST00000371081	ENST00000371081		ChiTaRS3.1			BF339151	GNAS	chr20	57485746	-	GNAS	chr20	57485838	+
Frame-shit	ENST00000264896	ENST00000565858		ChiTaRS3.1			BQ308261	SCARB2	chr4	77096942	-	ESRP2	chr16	68265554	+
Frame-shit	ENST00000264896	ENST00000473183		ChiTaRS3.1			BQ308261	SCARB2	chr4	77096942	-	ESRP2	chr16	68265554	+
Frame-shit	ENST00000452464	ENST00000565858		ChiTaRS3.1			BQ308261	SCARB2	chr4	77096942	-	ESRP2	chr16	68265554	+
Frame-shit	ENST00000452464	ENST00000473183		ChiTaRS3.1			BQ308261	SCARB2	chr4	77096942	-	ESRP2	chr16	68265554	+
intron-3UTR	ENST00000403668	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000444075	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000287701	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000558662	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000523613	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000397358	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000519047	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000355231	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000524238	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-3UTR	ENST00000517386	ENST00000534336		ChiTaRS3.1			BY800411	HMBOX1	chr8	28907550	+	MALAT1	chr11	65270340	+
intron-intron	ENST00000314571	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000314571		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000383797		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000454502		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000402228		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000444864		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000284995		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000415684		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000475595		ChiTaRS3.1			CV398941	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-3CDS	ENST00000575270	ENST00000371437		ChiTaRS3.1			CB162061	NFATC3	chr16	68260514	-	NDUFA1	chrX	119005876	+
3UTR-3CDS	ENST00000349223	ENST00000371437		ChiTaRS3.1			CB162061	NFATC3	chr16	68260514	-	NDUFA1	chrX	119005876	+
3UTR-3CDS	ENST00000329524	ENST00000371437		ChiTaRS3.1			CB162061	NFATC3	chr16	68260514	-	NDUFA1	chrX	119005876	+
3UTR-3CDS	ENST00000346183	ENST00000371437		ChiTaRS3.1			CB162061	NFATC3	chr16	68260514	-	NDUFA1	chrX	119005876	+
3UTR-3CDS	ENST00000535127	ENST00000371437		ChiTaRS3.1			CB162061	NFATC3	chr16	68260514	-	NDUFA1	chrX	119005876	+
intron-intron	ENST00000221466	ENST00000334940		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000221466	ENST00000374417		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000221466	ENST00000340258		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000221466	ENST00000472561		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000426395	ENST00000334940		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000426395	ENST00000374417		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000426395	ENST00000340258		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000426395	ENST00000472561		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000594823	ENST00000334940		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000594823	ENST00000374417		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000594823	ENST00000340258		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000594823	ENST00000472561		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000599988	ENST00000334940		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000599988	ENST00000374417		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000599988	ENST00000340258		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000599988	ENST00000472561		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000596975	ENST00000334940		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000596975	ENST00000374417		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000596975	ENST00000340258		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-intron	ENST00000596975	ENST00000472561		ChiTaRS3.1			AI937071	FCGRT	chr19	50028456	-	RASSF4	chr10	45466743	-
intron-3UTR	ENST00000342435	ENST00000342435		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000342435	ENST00000448205		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000342435	ENST00000487389		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000342435	ENST00000448787		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000342435	ENST00000484560		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000448205	ENST00000342435		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000448205	ENST00000448205		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448205	ENST00000487389		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448205	ENST00000448787		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448205	ENST00000484560		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000487389	ENST00000342435		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000487389	ENST00000448205		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000487389	ENST00000487389		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000487389	ENST00000448787		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000487389	ENST00000484560		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000448787	ENST00000342435		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000448787	ENST00000448205		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448787	ENST00000487389		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448787	ENST00000448787		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000448787	ENST00000484560		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000484560	ENST00000342435		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-3UTR	ENST00000484560	ENST00000448205		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000484560	ENST00000487389		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000484560	ENST00000448787		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000484560	ENST00000484560		ChiTaRS3.1			BU156701	PLSCR1	chr3	146233135	+	PLSCR1	chr3	146233095	-
intron-intron	ENST00000389629	ENST00000389629		ChiTaRS3.1			BI040771	RTF1	chr15	41767867	-	RTF1	chr15	41767899	+
intron-intron	ENST00000389629	ENST00000462276		ChiTaRS3.1			BI040771	RTF1	chr15	41767867	-	RTF1	chr15	41767899	+
intron-intron	ENST00000462276	ENST00000389629		ChiTaRS3.1			BI040771	RTF1	chr15	41767867	-	RTF1	chr15	41767899	+
intron-intron	ENST00000462276	ENST00000462276		ChiTaRS3.1			BI040771	RTF1	chr15	41767867	-	RTF1	chr15	41767899	+
intron-5UTR	ENST00000281129	ENST00000418115		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000281129	ENST00000454011		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000281129	ENST00000422781		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000281129	ENST00000265538		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000555265	ENST00000418115		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000555265	ENST00000454011		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000555265	ENST00000422781		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000555265	ENST00000265538		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000216517	ENST00000418115		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000216517	ENST00000454011		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000216517	ENST00000422781		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000216517	ENST00000265538		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000327841	ENST00000418115		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000327841	ENST00000454011		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000327841	ENST00000422781		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000327841	ENST00000265538		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000553717	ENST00000418115		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000553717	ENST00000454011		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-5UTR	ENST00000553717	ENST00000422781		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000553717	ENST00000265538		ChiTaRS3.1			AU119001	CEP128	chr14	81405747	-	RHOA	chr3	49449283	-
intron-intron	ENST00000344773	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000344773	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379624	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000342045	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000379632	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000361704	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000462484		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000334856		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000460843		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000603461	ENST00000371394		ChiTaRS3.1			CK818071	BRE	chr2	28455873	+	EHMT1	chr9	140641906	+
intron-intron	ENST00000444129	ENST00000361035		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000444129	ENST00000325945		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000444129	ENST00000482991		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000361035		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000325945		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000482991		ChiTaRS3.1			AI110601	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
5CDS-intron	ENST00000249373	ENST00000378847		ChiTaRS3.1			BF876881	SMO	chr7	128850907	+	CAMK1D	chr10	12522173	-
5CDS-intron	ENST00000249373	ENST00000487696		ChiTaRS3.1			BF876881	SMO	chr7	128850907	+	CAMK1D	chr10	12522173	-
5CDS-intron	ENST00000249373	ENST00000378845		ChiTaRS3.1			BF876881	SMO	chr7	128850907	+	CAMK1D	chr10	12522173	-
intron-3UTR	ENST00000373996	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000373996	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000373996	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000373996	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000373996	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000373996	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000373996	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000313400	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000313400	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000313400	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000313400	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000313400	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000313400	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000313400	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361209	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361209	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361209	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000361209	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361209	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361209	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000361209	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361477	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361477	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361477	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000361477	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361477	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000361477	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000361477	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000288520	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000288520	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000288520	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000288520	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000288520	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000288520	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000288520	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000341734	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000341734	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000341734	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000341734	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000341734	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000341734	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000341734	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000358637	ENST00000373996		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000358637	ENST00000313400		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000358637	ENST00000361209		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000358637	ENST00000361477		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000358637	ENST00000288520		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3UTR	ENST00000358637	ENST00000341734		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-intron	ENST00000358637	ENST00000358637		ChiTaRS3.1			BM796551	ASTN2	chr9	119187807	+	ASTN2	chr9	119187757	-
intron-3CDS	ENST00000310473	ENST00000346169		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000414031		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000392537		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000382330		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000350481		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000352767		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000427845		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000342981		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000319274		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000424196		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000411531		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000441154		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000434061		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000310473	ENST00000435046		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000346169		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000414031		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000392537		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000382330		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000350481		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000352767		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000427845		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000342981		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000319274		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000424196		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000411531		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000441154		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000434061		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000536983	ENST00000435046		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000346169		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000414031		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000392537		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000382330		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000350481		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000352767		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000427845		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000342981		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000319274		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000424196		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000411531		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000441154		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000434061		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000542615	ENST00000435046		ChiTaRS3.1			BQ016901	UCP2	chr11	73685963	+	EIF4G1	chr3	184045158	+
intron-3CDS	ENST00000234296	ENST00000234296		ChiTaRS3.1			BI027991	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-5UTR	ENST00000234296	ENST00000467605		ChiTaRS3.1			BI027991	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-3CDS	ENST00000467605	ENST00000234296		ChiTaRS3.1			BI027991	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-5UTR	ENST00000467605	ENST00000467605		ChiTaRS3.1			BI027991	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-intron	ENST00000361205	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000361205		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000399848		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000359446		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000587757		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000585931		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000586765		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000590308		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000592991		ChiTaRS3.1			AV707291	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000203556	ENST00000372307		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000372306		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000372310		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000475075		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000360584		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000357730		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000537678		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000203556	ENST00000492434		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000372307		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000372306		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000372310		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000475075		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000360584		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000357730		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000537678		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000445806	ENST00000492434		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000372307		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000372306		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000372310		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000475075		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000360584		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000357730		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000537678		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000587238	ENST00000492434		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000372307		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000372306		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000372310		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000475075		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000360584		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000357730		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000537678		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000586269	ENST00000492434		ChiTaRS3.1			BF801161	GMIP	chr19	19744885	+	SLC6A9	chr1	44468836	-
intron-intron	ENST00000264036	ENST00000420908		ChiTaRS3.1			BC007261	MCAM	chr11	119181869	+	UBE2Q2P2	chr15	82665103	-
intron-intron	ENST00000392814	ENST00000420908		ChiTaRS3.1			BC007261	MCAM	chr11	119181869	+	UBE2Q2P2	chr15	82665103	-
intron-intron	ENST00000530144	ENST00000420908		ChiTaRS3.1			BC007261	MCAM	chr11	119181869	+	UBE2Q2P2	chr15	82665103	-
intron-intron	ENST00000541292	ENST00000541292		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000541292	ENST00000318471		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000541292	ENST00000367756		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000318471	ENST00000541292		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000318471	ENST00000318471		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000318471	ENST00000367756		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000367756	ENST00000541292		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000367756	ENST00000318471		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000367756	ENST00000367756		ChiTaRS3.1			BQ640052	PEX7	chr6	137180879	+	PEX7	chr6	137176704	+
intron-intron	ENST00000505052	ENST00000505052		ChiTaRS3.1			BM979852	LY75-CD302	chr2	160660193	+	LY75-CD302	chr2	160660535	-
intron-intron	ENST00000505052	ENST00000504764		ChiTaRS3.1			BM979852	LY75-CD302	chr2	160660193	+	LY75-CD302	chr2	160660535	-
intron-intron	ENST00000504764	ENST00000505052		ChiTaRS3.1			BM979852	LY75-CD302	chr2	160660193	+	LY75-CD302	chr2	160660535	-
intron-intron	ENST00000504764	ENST00000504764		ChiTaRS3.1			BM979852	LY75-CD302	chr2	160660193	+	LY75-CD302	chr2	160660535	-
5CDS-3UTR	ENST00000295897	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000295897	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-intron	ENST00000295897	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000415165	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000415165	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-intron	ENST00000415165	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000503124	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000503124	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-intron	ENST00000503124	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000509063	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000509063	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-intron	ENST00000509063	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000401494	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-3UTR	ENST00000401494	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
5CDS-intron	ENST00000401494	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
3UTR-3UTR	ENST00000505649	ENST00000402696		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
3UTR-3UTR	ENST00000505649	ENST00000264998		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
3UTR-intron	ENST00000505649	ENST00000475382		ChiTaRS3.1			AI065112	ALB	chr4	74283820	-	TF	chr3	133497528	+
intron-3UTR	ENST00000363315	ENST00000371666		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000363315	ENST00000371642		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000363315	ENST00000481868		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000363315	ENST00000371637		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-3UTR	ENST00000364968	ENST00000371666		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000364968	ENST00000371642		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000364968	ENST00000481868		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000364968	ENST00000371637		ChiTaRS3.1			BQ436512	SNHG16	chr17	74559912	+	IL13RA1	chrX	117926543	+
intron-intron	ENST00000405402	ENST00000405402		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000405402	ENST00000253458		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000405402	ENST00000393243		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000405402	ENST00000471070		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000253458	ENST00000405402		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000253458	ENST00000253458		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000253458	ENST00000393243		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000253458	ENST00000471070		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000393243	ENST00000405402		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000393243	ENST00000253458		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000393243	ENST00000393243		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000393243	ENST00000471070		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000471070	ENST00000405402		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000471070	ENST00000253458		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000471070	ENST00000393243		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-intron	ENST00000471070	ENST00000471070		ChiTaRS3.1			BU607372	GSE1	chr16	85659573	-	GSE1	chr16	85663310	-
intron-3CDS	ENST00000316881	ENST00000316881		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000316881	ENST00000573108		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000316881	ENST00000537230		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-3CDS	ENST00000573108	ENST00000316881		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000573108	ENST00000573108		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000573108	ENST00000537230		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-3CDS	ENST00000537230	ENST00000316881		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000537230	ENST00000573108		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
intron-intron	ENST00000537230	ENST00000537230		ChiTaRS3.1			BF994652	TRIM25	chr17	54972737	+	TRIM25	chr17	54972919	-
5CDS-intron	ENST00000367064	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367064	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367064	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367064	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367064	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367063	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367063	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367063	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367063	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367063	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391921	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391921	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391921	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000391921	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000391921	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000367067	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000367067	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000367067	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-3UTR	ENST00000367067	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-3UTR	ENST00000367067	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000314754	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000314754	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000314754	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000314754	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000314754	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391920	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391920	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000391920	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000391920	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000391920	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367062	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367062	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367062	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367062	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367062	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367065	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367065	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-intron	ENST00000367065	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367065	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
5CDS-3UTR	ENST00000367065	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000465534	ENST00000485761		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000465534	ENST00000367036		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-intron	ENST00000465534	ENST00000310833		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-3UTR	ENST00000465534	ENST00000356522		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
3UTR-3UTR	ENST00000465534	ENST00000537704		ChiTaRS3.1			BF849652	CD55	chr1	207510163	+	CD34	chr1	208061117	-
intron-intron	ENST00000413465	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000413465	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000413465	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000359597	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000359597	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000359597	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000269305	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000269305	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000269305	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000455263	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000455263	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000455263	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000420246	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000420246	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000420246	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000445888	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000445888	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000445888	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000574684	ENST00000378004		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000574684	ENST00000274498		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000574684	ENST00000486650		ChiTaRS3.1			CB048242	TP53	chr17	7571951	+	ARHGAP26	chr5	142297940	+
intron-intron	ENST00000490882	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000490882	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000429972	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000295956	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000358537	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000357272	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000348383	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000493452	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000419752	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000490882		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000429972		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000295956		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000358537		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000357272		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000348383		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000493452		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000419752		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-intron	ENST00000484981	ENST00000484981		ChiTaRS3.1			BG987842	FLNB	chr3	58113162	-	FLNB	chr3	58113396	+
intron-3CDS	ENST00000355280	ENST00000355280		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000355280	ENST00000347992		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000355280	ENST00000453408		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000347992	ENST00000355280		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000347992	ENST00000347992		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000347992	ENST00000453408		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000453408	ENST00000355280		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000453408	ENST00000347992		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-3CDS	ENST00000453408	ENST00000453408		ChiTaRS3.1			BI009462	MINK1	chr17	4800492	+	MINK1	chr17	4800530	-
intron-intron	ENST00000335512	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000335512	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000539837	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000539837	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000470987	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000470987	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000291539	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000291539	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398236	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398236	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398229	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398229	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398234	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398234	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398232	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398232	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398227	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398227	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398225	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398225	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000380328	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000380328	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000328862	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000328862	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000335440	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000335440	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398224	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000398224	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000349112	ENST00000276570		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
intron-intron	ENST00000349112	ENST00000519330		ChiTaRS3.1			BI045962	PDE9A	chr21	44110439	+	DNAJC5B	chr8	67011294	-
3UTR-intron	ENST00000361970	ENST00000453654		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000361970	ENST00000288490		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000361970	ENST00000424189		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000361970	ENST00000446122		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000361970	ENST00000494390		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000388827	ENST00000453654		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000388827	ENST00000288490		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000388827	ENST00000424189		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000388827	ENST00000446122		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
3UTR-intron	ENST00000388827	ENST00000494390		ChiTaRS3.1			AA665202	CCDC152	chr5	42800293	-	DGKI	chr7	137390839	+
intron-intron	ENST00000322019	ENST00000539563		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000322019	ENST00000490035		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000322019	ENST00000498645		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379386	ENST00000539563		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379386	ENST00000490035		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379386	ENST00000498645		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379390	ENST00000539563		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379390	ENST00000490035		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000379390	ENST00000498645		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000565774	ENST00000539563		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000565774	ENST00000490035		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000565774	ENST00000498645		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000564988	ENST00000539563		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000564988	ENST00000490035		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-intron	ENST00000564988	ENST00000498645		ChiTaRS3.1			BQ010902	TM6SF1	chr15	83795913	-	LSAMP	chr3	115888035	-
intron-3CDS	ENST00000262030	ENST00000316403		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000262030	ENST00000546343		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000262030	ENST00000560366		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000262030	ENST00000405140		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000262030	ENST00000523500		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000552919	ENST00000316403		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000552919	ENST00000546343		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000552919	ENST00000560366		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000552919	ENST00000405140		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000552919	ENST00000523500		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000550162	ENST00000316403		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000550162	ENST00000546343		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000550162	ENST00000560366		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000550162	ENST00000405140		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-3CDS	ENST00000550162	ENST00000523500		ChiTaRS3.1			BF819282	ATP5B	chr12	57036599	-	CLU	chr8	27462542	+
intron-intron	ENST00000393193	ENST00000330909		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000393193	ENST00000402939		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000393193	ENST00000483466		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000393193	ENST00000497477		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000393193	ENST00000470990		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000376392	ENST00000330909		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000376392	ENST00000402939		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000376392	ENST00000483466		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000376392	ENST00000497477		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000376392	ENST00000470990		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000555572	ENST00000330909		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000555572	ENST00000402939		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000555572	ENST00000483466		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000555572	ENST00000497477		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000555572	ENST00000470990		ChiTaRS3.1			AW964262	NME2	chr17	49246528	+	MAGI1	chr3	65763857	-
intron-intron	ENST00000393651	ENST00000569600		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000393651	ENST00000219139		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000393651	ENST00000569683		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000357311	ENST00000569600		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000357311	ENST00000219139		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000357311	ENST00000569683		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000489828	ENST00000569600		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000489828	ENST00000219139		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000489828	ENST00000569683		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000493638	ENST00000569600		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000493638	ENST00000219139		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000493638	ENST00000569683		ChiTaRS3.1			BE066992	SRPK2	chr7	104914747	+	C16orf70	chr16	67151365	-
intron-intron	ENST00000464611	ENST00000464611		ChiTaRS3.1			BG258572	ACTB	chr7	5570198	+	ACTB	chr7	5569213	-
intron-intron	ENST00000464611	ENST00000331789		ChiTaRS3.1			BG258572	ACTB	chr7	5570198	+	ACTB	chr7	5569213	-
intron-intron	ENST00000331789	ENST00000464611		ChiTaRS3.1			BG258572	ACTB	chr7	5570198	+	ACTB	chr7	5569213	-
intron-intron	ENST00000331789	ENST00000331789		ChiTaRS3.1			BG258572	ACTB	chr7	5570198	+	ACTB	chr7	5569213	-
intron-5UTR	ENST00000381340	ENST00000216554		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000381340	ENST00000558506		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000381340	ENST00000560200		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000381340	ENST00000392715		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-5UTR	ENST00000545902	ENST00000216554		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000545902	ENST00000558506		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000545902	ENST00000560200		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000545902	ENST00000392715		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-5UTR	ENST00000242737	ENST00000216554		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000242737	ENST00000558506		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000242737	ENST00000560200		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-intron	ENST00000242737	ENST00000392715		ChiTaRS3.1			AI133642	ITPR2	chr12	26854081	+	EIF5	chr14	103800574	+
intron-3CDS	ENST00000369299	ENST00000552951		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
intron-3UTR	ENST00000369299	ENST00000280749		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
intron-3UTR	ENST00000369299	ENST00000548583		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3CDS	ENST00000393045	ENST00000552951		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3UTR	ENST00000393045	ENST00000280749		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3UTR	ENST00000393045	ENST00000548583		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3CDS	ENST00000369298	ENST00000552951		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3UTR	ENST00000369298	ENST00000280749		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
3UTR-3UTR	ENST00000369298	ENST00000548583		ChiTaRS3.1			BU608702	PIAS3	chr1	145585975	-	C12orf45	chr12	105388298	+
intron-intron	ENST00000536363	ENST00000261811		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000536363	ENST00000509789		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000540689	ENST00000261811		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000540689	ENST00000509789		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000601134	ENST00000261811		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000601134	ENST00000509789		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000601629	ENST00000261811		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000601629	ENST00000509789		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000292530	ENST00000261811		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000292530	ENST00000509789		ChiTaRS3.1			AW850202	ZNF333	chr19	14818656	-	CYSTM1	chr5	139568246	-
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			BU753672	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-3CDS	ENST00000389153	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000389153	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000389153	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000389153	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000389153	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000608853	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000608853	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000608853	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000608853	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000608853	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000377617	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000377617	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000377617	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000377617	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000377617	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000550104	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000550104	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000550104	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000550104	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000550104	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000542287	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000542287	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000542287	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000542287	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000542287	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000535949	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000535949	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000535949	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000535949	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000535949	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000549455	ENST00000327155		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000549455	ENST00000399722		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000549455	ENST00000399725		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-3CDS	ENST00000549455	ENST00000360790		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000549455	ENST00000581687		ChiTaRS3.1			AA773762	ATXN2	chr12	111890334	+	RBBP8	chr18	20581625	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			DA120272	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-3UTR	ENST00000589037	ENST00000523677		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
intron-intron	ENST00000589037	ENST00000423420		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
intron-3UTR	ENST00000253788	ENST00000523677		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
intron-intron	ENST00000253788	ENST00000423420		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
5CDS-3UTR	ENST00000589913	ENST00000523677		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
5CDS-intron	ENST00000589913	ENST00000423420		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
intron-3UTR	ENST00000590864	ENST00000523677		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
intron-intron	ENST00000590864	ENST00000423420		ChiTaRS3.1			BU674462	RPL27	chr17	41150769	-	C1orf210	chr1	43748098	-
5UTR-5UTR	ENST00000331825	ENST00000331825		ChiTaRS3.1			BQ315742	FTL	chr19	49468720	-	FTL	chr19	49468566	+
3UTR-3CDS	ENST00000248975	ENST00000248975		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000248975	ENST00000397492		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000248975	ENST00000471374		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3CDS	ENST00000397492	ENST00000248975		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000397492	ENST00000397492		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000397492	ENST00000471374		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3CDS	ENST00000471374	ENST00000248975		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000471374	ENST00000397492		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
3UTR-3UTR	ENST00000471374	ENST00000471374		ChiTaRS3.1			BF904422	YWHAH	chr22	32352887	+	YWHAH	chr22	32352651	-
intron-3UTR	ENST00000357325	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-3UTR	ENST00000537739	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-3UTR	ENST00000368209	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-3UTR	ENST00000465180	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-3UTR	ENST00000416666	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-3UTR	ENST00000368206	ENST00000285243		ChiTaRS3.1			BG980322	HDGF	chr1	156713499	-	ANKRD40	chr17	48772724	+
intron-intron	ENST00000274542	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000274542	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000519865	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000424310	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000521606	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518802	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000520638	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000274542		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000519865		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000424310		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000521606		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000518802		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000520638		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-intron	ENST00000518284	ENST00000518284		ChiTaRS3.1			BF333692	RNF145	chr5	158613641	+	RNF145	chr5	158613760	-
intron-3UTR	ENST00000302053	ENST00000215912		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000302053	ENST00000441972		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000302053	ENST00000487265		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000302053	ENST00000402249		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000403106	ENST00000215912		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000403106	ENST00000441972		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000403106	ENST00000487265		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000403106	ENST00000402249		ChiTaRS3.1			AI110732	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000432054	ENST00000432054		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000432054	ENST00000393238		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000432054	ENST00000426664		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000432054	ENST00000329333		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000432054	ENST00000515024		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000393238	ENST00000432054		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000393238	ENST00000393238		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000393238	ENST00000426664		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000393238	ENST00000329333		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000393238	ENST00000515024		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000426664	ENST00000432054		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000426664	ENST00000393238		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000426664	ENST00000426664		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000426664	ENST00000329333		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000426664	ENST00000515024		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000329333	ENST00000432054		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000329333	ENST00000393238		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000329333	ENST00000426664		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000329333	ENST00000329333		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000329333	ENST00000515024		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000515024	ENST00000432054		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000515024	ENST00000393238		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000515024	ENST00000426664		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000515024	ENST00000329333		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-intron	ENST00000515024	ENST00000515024		ChiTaRS3.1			CA314382	TMCC1	chr3	129367667	+	TMCC1	chr3	129367865	-
intron-3UTR	ENST00000518527	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000518527	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000518527	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000518527	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000377360	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000328939	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000390656	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000520740	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000434108	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000407327		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000335757		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000586078		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000411494	ENST00000588214		ChiTaRS3.1			BF376932	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			BE939392	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3CDS	ENST00000193403	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000193403	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000193403	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000193403	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000193403	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000394419	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000394419	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000394419	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000394419	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000394419	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000438964	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000438964	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000438964	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000438964	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000438964	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000376839	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000376839	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000376839	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000376839	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000376839	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000538545	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000538545	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000538545	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000538545	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000538545	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000554508	ENST00000331889		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3CDS	ENST00000554508	ENST00000328834		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000554508	ENST00000538368		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000554508	ENST00000454516		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-intron	ENST00000554508	ENST00000463697		ChiTaRS3.1			BE837802	ACTN1	chr14	69431376	-	CNOT10	chr3	32806208	-
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000353334		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000524315		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000353334		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000524315		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000353334		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000524315		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000353334		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000524315		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			AA593162	CD74	chr5	149781293	-	CD74	chr5	149781208	+
intron-intron	ENST00000383202	ENST00000383202		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000383202	ENST00000236698		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000383202	ENST00000434713		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000383202	ENST00000480733		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000383202	ENST00000536929		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000236698	ENST00000383202		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000236698	ENST00000236698		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000236698	ENST00000434713		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000236698	ENST00000480733		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000236698	ENST00000536929		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000434713	ENST00000383202		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000434713	ENST00000236698		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000434713	ENST00000434713		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000434713	ENST00000480733		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000434713	ENST00000536929		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000480733	ENST00000383202		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000480733	ENST00000236698		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000480733	ENST00000434713		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000480733	ENST00000480733		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000480733	ENST00000536929		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000536929	ENST00000383202		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000536929	ENST00000236698		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000536929	ENST00000434713		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000536929	ENST00000480733		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
intron-intron	ENST00000536929	ENST00000536929		ChiTaRS3.1			AA320662	STAG1	chr3	136120898	-	STAG1	chr3	136121817	-
5CDS-intron	ENST00000359428	ENST00000503538		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000359428	ENST00000312916		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000359428	ENST00000506806		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000411637	ENST00000503538		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000411637	ENST00000312916		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000411637	ENST00000506806		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000451030	ENST00000503538		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000451030	ENST00000312916		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000451030	ENST00000506806		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000483497	ENST00000503538		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000483497	ENST00000312916		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
5CDS-intron	ENST00000483497	ENST00000506806		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
intron-intron	ENST00000465486	ENST00000503538		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
intron-intron	ENST00000465486	ENST00000312916		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
intron-intron	ENST00000465486	ENST00000506806		ChiTaRS3.1			BF082622	NUP214	chr9	134103618	-	AGGF1	chr5	76359041	-
intron-3UTR	ENST00000545391	ENST00000597960		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000545391	ENST00000610101		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000545391	ENST00000596558		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000545391	ENST00000222308		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000545391	ENST00000608443		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-intron	ENST00000545391	ENST00000453489		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000361171	ENST00000597960		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000361171	ENST00000610101		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000361171	ENST00000596558		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000361171	ENST00000222308		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000361171	ENST00000608443		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-intron	ENST00000361171	ENST00000453489		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000436593	ENST00000597960		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000436593	ENST00000610101		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000436593	ENST00000596558		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000436593	ENST00000222308		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000436593	ENST00000608443		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-intron	ENST00000436593	ENST00000453489		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000535766	ENST00000597960		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000535766	ENST00000610101		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000535766	ENST00000596558		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000535766	ENST00000222308		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000535766	ENST00000608443		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-intron	ENST00000535766	ENST00000453489		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000485886	ENST00000597960		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000485886	ENST00000610101		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000485886	ENST00000596558		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000485886	ENST00000222308		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3UTR	ENST00000485886	ENST00000608443		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-intron	ENST00000485886	ENST00000453489		ChiTaRS3.1			AK092072	MVB12B	chr9	129249192	-	FKBP8	chr19	18642643	-
intron-3CDS	ENST00000415912	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000415912	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000415912	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000415912	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000415912	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000415912	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000357071	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000357071	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000357071	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000357071	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000357071	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000357071	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000374893	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000374893	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000374893	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000374893	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000374893	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000374893	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000436918	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000436918	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000436918	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000436918	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000436918	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000436918	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000264205	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000264205	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000264205	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000264205	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000264205	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000264205	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000528294	ENST00000415912		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000528294	ENST00000357071		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000528294	ENST00000374893		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000528294	ENST00000436918		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-3CDS	ENST00000528294	ENST00000264205		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000528294	ENST00000528294		ChiTaRS3.1			CV397322	ECE1	chr1	21554534	-	ECE1	chr1	21554454	+
intron-intron	ENST00000504881	ENST00000504881		ChiTaRS3.1			BG387962	SRFBP1	chr5	121363358	-	SRFBP1	chr5	121363381	+
intron-3UTR	ENST00000504881	ENST00000339397		ChiTaRS3.1			BG387962	SRFBP1	chr5	121363358	-	SRFBP1	chr5	121363381	+
3UTR-intron	ENST00000339397	ENST00000504881		ChiTaRS3.1			BG387962	SRFBP1	chr5	121363358	-	SRFBP1	chr5	121363381	+
3UTR-3UTR	ENST00000339397	ENST00000339397		ChiTaRS3.1			BG387962	SRFBP1	chr5	121363358	-	SRFBP1	chr5	121363381	+
intron-3CDS	ENST00000378330	ENST00000378330		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000378330	ENST00000301030		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000378330	ENST00000563291		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000378330	ENST00000567736		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000301030	ENST00000378330		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000301030	ENST00000301030		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000301030	ENST00000563291		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000301030	ENST00000567736		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000563291	ENST00000378330		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000563291	ENST00000301030		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000563291	ENST00000563291		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000563291	ENST00000567736		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000567736	ENST00000378330		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000567736	ENST00000301030		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000567736	ENST00000563291		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-intron	ENST00000567736	ENST00000567736		ChiTaRS3.1			AA581362	ANKRD11	chr16	89350716	+	ANKRD11	chr16	89349736	+
intron-3CDS	ENST00000393328	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000393328	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-3CDS	ENST00000393331	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000393331	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-3CDS	ENST00000347630	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000347630	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-3CDS	ENST00000504102	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000504102	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-3CDS	ENST00000503676	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000503676	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-3CDS	ENST00000513080	ENST00000341865		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000513080	ENST00000356542		ChiTaRS3.1			BF812662	SPOP	chr17	47677504	-	C6orf132	chr6	42074527	+
intron-intron	ENST00000311191	ENST00000295640		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000311191	ENST00000367286		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000311191	ENST00000471105		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389798	ENST00000295640		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389798	ENST00000367286		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389798	ENST00000471105		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389797	ENST00000295640		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389797	ENST00000367286		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000389797	ENST00000471105		ChiTaRS3.1			C16632	LRCH1	chr13	47135130	+	RNPEP	chr1	201968635	+
intron-intron	ENST00000595886	ENST00000395339		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000374882		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000374881		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000446855		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000455660		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000436627		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000457261		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000447073		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000416134		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000449883		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000446762		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000441960		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000546794		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000425784		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000429645		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000416564		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000399630		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000383236		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000383238		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000427919		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000421445		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000452573		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000458543		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000438442		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-intron	ENST00000595886	ENST00000435978		ChiTaRS3.1			BF850322	FENDRR	chr16	86538435	+	PSMB8	chr6	4240264	+
intron-3UTR	ENST00000342228	ENST00000340533		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000342228	ENST00000494131		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000342228	ENST00000397914		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000342228	ENST00000299438		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000342228	ENST00000579064		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000340533		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000494131		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520262	ENST00000397914		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000299438		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520262	ENST00000579064		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000340533		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000494131		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520179	ENST00000397914		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000299438		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520179	ENST00000579064		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000340533		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000494131		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000523340	ENST00000397914		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000299438		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000523340	ENST00000579064		ChiTaRS3.1			AI110592	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000537098	ENST00000390548		ChiTaRS3.1			BF881702	CMIP	chr16	81558295	-	IGHG1	chr22	22550163	+
intron-intron	ENST00000539778	ENST00000390548		ChiTaRS3.1			BF881702	CMIP	chr16	81558295	-	IGHG1	chr22	22550163	+
intron-intron	ENST00000566513	ENST00000390548		ChiTaRS3.1			BF881702	CMIP	chr16	81558295	-	IGHG1	chr22	22550163	+
intron-intron	ENST00000398040	ENST00000390548		ChiTaRS3.1			BF881702	CMIP	chr16	81558295	-	IGHG1	chr22	22550163	+
intron-intron	ENST00000504968	ENST00000504968		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000504968	ENST00000399100		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000504968	ENST00000265175		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000399100	ENST00000504968		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000399100	ENST00000399100		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000399100	ENST00000265175		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000265175	ENST00000504968		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000265175	ENST00000399100		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000265175	ENST00000265175		ChiTaRS3.1			AV715572	SEC24B	chr4	110450882	+	SEC24B	chr4	110449940	+
intron-intron	ENST00000446845	ENST00000266000		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000374542		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000414083		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000477162		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000455860		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000436311		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000472399		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000399060		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000383062		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000461796		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000433482		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000445009		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000469277		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000399344		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000383194		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000494562		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000446845	ENST00000414388		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000266000		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000374542		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000414083		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000477162		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000455860		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000436311		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000472399		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000399060		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000383062		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000461796		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000433482		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000445009		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000469277		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000399344		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000383194		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000494562		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
5CDS-intron	ENST00000311806	ENST00000414388		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000266000		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000374542		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000414083		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000477162		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000455860		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000436311		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000472399		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000399060		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000383062		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000461796		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000433482		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000445009		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000469277		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000399344		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000383194		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000494562		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-intron	ENST00000492714	ENST00000414388		ChiTaRS3.1			BG114042	OXSR1	chr3	38294368	+	DAXX	chr6	4760682	-
intron-3UTR	ENST00000394023	ENST00000237536		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000394023	ENST00000279034		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000394023	ENST00000456801		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000394023	ENST00000357779		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000550164	ENST00000237536		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000550164	ENST00000279034		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000550164	ENST00000456801		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000550164	ENST00000357779		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000347471	ENST00000237536		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000347471	ENST00000279034		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000347471	ENST00000456801		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000347471	ENST00000357779		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000267064	ENST00000237536		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000267064	ENST00000279034		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000267064	ENST00000456801		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000267064	ENST00000357779		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000550859	ENST00000237536		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000550859	ENST00000279034		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-3UTR	ENST00000550859	ENST00000456801		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
intron-intron	ENST00000550859	ENST00000357779		ChiTaRS3.1			AW295202	SMARCC2	chr12	56557163	+	SOGA1	chr20	35412547	+
Frame-shit	ENST00000452510	ENST00000452510		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
Frame-shit	ENST00000452510	ENST00000354283		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
5CDS-intron	ENST00000452510	ENST00000509178		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
Frame-shit	ENST00000354283	ENST00000452510		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
Frame-shit	ENST00000354283	ENST00000354283		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
5CDS-intron	ENST00000354283	ENST00000509178		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
intron-3CDS	ENST00000509178	ENST00000452510		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
intron-3CDS	ENST00000509178	ENST00000354283		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
intron-intron	ENST00000509178	ENST00000509178		ChiTaRS3.1			BI006802	DDX46	chr5	134131770	+	DDX46	chr5	134131820	-
intron-3CDS	ENST00000421834	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000421834	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000421834	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000421834	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370769	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370769	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370769	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000370769	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000312431	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000312431	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000312431	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000312431	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370754	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370754	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370754	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000370754	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370788	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370788	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370788	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000370788	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000361203	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000361203	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000361203	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000361203	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000244364	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000244364	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000244364	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000244364	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000446842	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000446842	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000446842	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000446842	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000340834	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000340834	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000340834	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000340834	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370765	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370765	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000370765	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000370765	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000518935	ENST00000310118		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000518935	ENST00000435761		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-3CDS	ENST00000518935	ENST00000439383		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000518935	ENST00000459910		ChiTaRS3.1			BF081412	DST	chr6	56373505	+	PSMD2	chr3	184023926	-
intron-intron	ENST00000325351	ENST00000262135		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000379925		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000563746		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000564374		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568009		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568653		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000566096		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000262135		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000379925		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000563746		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000564374		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568009		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568653		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000566096		ChiTaRS3.1			AI989642	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			DA074132	IGFBP5	chr2	217538057	-	IGFBP5	chr2	217538502	-
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
Frame-shit	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
5CDS-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272372	KMT2A	chr11	118353210	+	KMT2A	chr11	118352428	+
intron-intron	ENST00000409078	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000409078	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000409078	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000231461		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000451528		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000507360		ChiTaRS3.1			AK074622	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
5CDS-3UTR	ENST00000356415	ENST00000356415		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-3UTR	ENST00000356415	ENST00000436150		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-3UTR	ENST00000356415	ENST00000369709		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-intron	ENST00000356415	ENST00000545460		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
5CDS-intron	ENST00000356415	ENST00000494982		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000356415		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000436150		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000436150	ENST00000369709		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000436150	ENST00000545460		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000436150	ENST00000494982		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000356415		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000436150		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-3UTR	ENST00000369709	ENST00000369709		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000369709	ENST00000545460		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
3UTR-intron	ENST00000369709	ENST00000494982		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000356415		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000436150		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000545460	ENST00000369709		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000545460	ENST00000545460		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000545460	ENST00000494982		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000356415		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000436150		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3UTR	ENST00000494982	ENST00000369709		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000494982	ENST00000545460		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-intron	ENST00000494982	ENST00000494982		ChiTaRS3.1			AA525882	RAP1A	chr1	112255734	+	RAP1A	chr1	112255654	-
intron-3CDS	ENST00000401558	ENST00000401558		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000401558	ENST00000404992		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000401558	ENST00000406957		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-intron	ENST00000401558	ENST00000481214		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000404992	ENST00000401558		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000404992	ENST00000404992		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000404992	ENST00000406957		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-intron	ENST00000404992	ENST00000481214		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000406957	ENST00000401558		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000406957	ENST00000404992		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000406957	ENST00000406957		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-intron	ENST00000406957	ENST00000481214		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000481214	ENST00000401558		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000481214	ENST00000404992		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-3CDS	ENST00000481214	ENST00000406957		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-intron	ENST00000481214	ENST00000481214		ChiTaRS3.1			BG259252	XPO1	chr2	61715746	+	XPO1	chr2	61715358	-
intron-intron	ENST00000308482	ENST00000325722		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000308482	ENST00000373266		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-5UTR	ENST00000308482	ENST00000485551		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000468950	ENST00000325722		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000468950	ENST00000373266		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-5UTR	ENST00000468950	ENST00000485551		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000289175	ENST00000325722		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000289175	ENST00000373266		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-5UTR	ENST00000289175	ENST00000485551		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000244815	ENST00000325722		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000244815	ENST00000373266		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-5UTR	ENST00000244815	ENST00000485551		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000392000	ENST00000325722		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000392000	ENST00000373266		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-5UTR	ENST00000392000	ENST00000485551		ChiTaRS3.1			AW851952	LRRFIP1	chr2	238676525	-	KIAA0319L	chr1	35905269	-
intron-intron	ENST00000523189	ENST00000523189		ChiTaRS3.1			AA837742	RANBP17	chr5	170695304	+	RANBP17	chr5	170695099	-
intron-intron	ENST00000523189	ENST00000521759		ChiTaRS3.1			AA837742	RANBP17	chr5	170695304	+	RANBP17	chr5	170695099	-
intron-intron	ENST00000521759	ENST00000523189		ChiTaRS3.1			AA837742	RANBP17	chr5	170695304	+	RANBP17	chr5	170695099	-
intron-intron	ENST00000521759	ENST00000521759		ChiTaRS3.1			AA837742	RANBP17	chr5	170695304	+	RANBP17	chr5	170695099	-
3UTR-3UTR	ENST00000262461	ENST00000359301		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-3UTR	ENST00000262461	ENST00000251038		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000302216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000556945		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000557607		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000555755		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000393514		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000336693		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000557605		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000318308		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000555900		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-intron	ENST00000262461	ENST00000406216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-3UTR	ENST00000343225	ENST00000359301		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-3UTR	ENST00000343225	ENST00000251038		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000302216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000556945		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000557607		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000555755		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000393514		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000336693		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000557605		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000318308		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000555900		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000343225	ENST00000406216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-3UTR	ENST00000507791	ENST00000359301		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-3UTR	ENST00000507791	ENST00000251038		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000302216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000556945		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000557607		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000555755		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000393514		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000336693		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000557605		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000318308		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000555900		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
intron-intron	ENST00000507791	ENST00000406216		ChiTaRS3.1			BM968312	SLC12A2	chr5	127525270	-	ZC3H14	chr14	89078766	+
3UTR-3UTR	ENST00000538609	ENST00000538609		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
3UTR-3UTR	ENST00000538609	ENST00000371901		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
3UTR-intron	ENST00000538609	ENST00000466294		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
3UTR-3UTR	ENST00000371901	ENST00000538609		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
3UTR-3UTR	ENST00000371901	ENST00000371901		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
3UTR-intron	ENST00000371901	ENST00000466294		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
intron-3UTR	ENST00000466294	ENST00000538609		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
intron-3UTR	ENST00000466294	ENST00000371901		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
intron-intron	ENST00000466294	ENST00000466294		ChiTaRS3.1			CA313612	CYP4X1	chr1	47516228	-	CYP4X1	chr1	47515973	+
intron-3UTR	ENST00000354329	ENST00000354329		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-5UTR	ENST00000354329	ENST00000529578		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000354329	ENST00000533112		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000354329	ENST00000531253		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000354329	ENST00000527372		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000529578	ENST00000354329		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-5UTR	ENST00000529578	ENST00000529578		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000529578	ENST00000533112		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000529578	ENST00000531253		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000529578	ENST00000527372		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000533112	ENST00000354329		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-5UTR	ENST00000533112	ENST00000529578		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000533112	ENST00000533112		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000533112	ENST00000531253		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000533112	ENST00000527372		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000531253	ENST00000354329		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-5UTR	ENST00000531253	ENST00000529578		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000531253	ENST00000533112		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000531253	ENST00000531253		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000531253	ENST00000527372		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000527372	ENST00000354329		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-5UTR	ENST00000527372	ENST00000529578		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000527372	ENST00000533112		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000527372	ENST00000531253		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3UTR	ENST00000527372	ENST00000527372		ChiTaRS3.1			AW503292	MYO18A	chr17	27401386	+	MYO18A	chr17	27400943	-
intron-3CDS	ENST00000338154	ENST00000338154		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338154	ENST00000357988		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338154	ENST00000338946		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338154	ENST00000322659		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000338154	ENST00000462182		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000357988	ENST00000338154		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000357988	ENST00000357988		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000357988	ENST00000338946		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000357988	ENST00000322659		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000357988	ENST00000462182		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338946	ENST00000338154		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338946	ENST00000357988		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338946	ENST00000338946		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000338946	ENST00000322659		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000338946	ENST00000462182		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000322659	ENST00000338154		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000322659	ENST00000357988		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000322659	ENST00000338946		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000322659	ENST00000322659		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000322659	ENST00000462182		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000462182	ENST00000338154		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000462182	ENST00000357988		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000462182	ENST00000338946		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-3CDS	ENST00000462182	ENST00000322659		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000462182	ENST00000462182		ChiTaRS3.1			AW796192	PHF8	chrX	54022210	+	PHF8	chrX	54022153	-
intron-intron	ENST00000250894	ENST00000399537		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000250894	ENST00000430969		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000250894	ENST00000399434		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000356010	ENST00000399537		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000356010	ENST00000430969		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000356010	ENST00000399434		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000568271	ENST00000399537		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000568271	ENST00000430969		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
intron-intron	ENST00000568271	ENST00000399434		ChiTaRS3.1			AW889582	MAPK8IP3	chr16	1794712	+	TNRC18	chr7	5404674	+
Frame-shit	ENST00000264485	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000264485	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000264485	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000264485	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000264485	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000264485	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000425175	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000425175	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000425175	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000425175	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000425175	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000425175	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000351898	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000351898	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000351898	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000351898	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000351898	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000351898	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000340595	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000340595	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000340595	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000340595	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000340595	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000340595	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3CDS	ENST00000514331	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3CDS	ENST00000514331	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3CDS	ENST00000514331	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3CDS	ENST00000514331	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3UTR	ENST00000514331	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
3UTR-3UTR	ENST00000514331	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000512686	ENST00000264485		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000512686	ENST00000425175		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000512686	ENST00000351898		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
Frame-shit	ENST00000512686	ENST00000340595		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000512686	ENST00000514331		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
5CDS-3UTR	ENST00000512686	ENST00000512686		ChiTaRS3.1			BF924222	SLC4A4	chr4	72332218	+	SLC4A4	chr4	72306404	+
intron-3CDS	ENST00000540080	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000540080	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000433436	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000433436	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000433436	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000433436	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000433436	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000433436	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000433436	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000433436	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000538225	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000538225	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000538225	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000538225	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000538225	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000538225	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000538225	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000538225	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000345519	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000345519	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000345519	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000345519	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000345519	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000345519	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000345519	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000345519	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000470744	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000470744	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000470744	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000470744	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000470744	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000470744	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000470744	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000470744	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000242285	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000242285	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000242285	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000242285	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000242285	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000242285	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000242285	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000242285	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-3CDS	ENST00000466396	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000396603	ENST00000540080		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000396603	ENST00000433436		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000396603	ENST00000538225		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000396603	ENST00000345519		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
In-frame	ENST00000396603	ENST00000470744		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000396603	ENST00000242285		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000396603	ENST00000466396		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
Frame-shit	ENST00000396603	ENST00000396603		ChiTaRS3.1			BE697332	CLTA	chr9	36199058	+	CLTA	chr9	36211634	-
intron-intron	ENST00000545391	ENST00000395715		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000220888		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000519076		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000520276		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000545391	ENST00000519674		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000395715		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000220888		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000519076		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000520276		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000361171	ENST00000519674		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000395715		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000220888		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000519076		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000520276		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000436593	ENST00000519674		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000395715		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000220888		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000519076		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000520276		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000535766	ENST00000519674		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000395715		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000220888		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000519076		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000520276		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
intron-intron	ENST00000485886	ENST00000519674		ChiTaRS3.1			BF327702	MVB12B	chr9	129189593	+	TRPS1	chr8	116587669	+
3UTR-3UTR	ENST00000374078	ENST00000550735		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374078	ENST00000551404		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374078	ENST00000547305		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374078	ENST00000546394		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-3UTR	ENST00000374077	ENST00000550735		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374077	ENST00000551404		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374077	ENST00000547305		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374077	ENST00000546394		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-3UTR	ENST00000374072	ENST00000550735		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374072	ENST00000551404		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374072	ENST00000547305		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000374072	ENST00000546394		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
intron-3UTR	ENST00000397416	ENST00000550735		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
intron-intron	ENST00000397416	ENST00000551404		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
intron-intron	ENST00000397416	ENST00000547305		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
intron-intron	ENST00000397416	ENST00000546394		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-3UTR	ENST00000336695	ENST00000550735		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000336695	ENST00000551404		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000336695	ENST00000547305		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
3UTR-intron	ENST00000336695	ENST00000546394		ChiTaRS3.1			CA312732	ROMO1	chr20	34288845	-	MAPKAPK5	chr12	112331098	+
intron-intron	ENST00000264042	ENST00000392869		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000409214		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000392867		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000409298		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000344850		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000542155		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000241391		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000463875		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000264042	ENST00000467352		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000392869		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000409214		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000392867		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000409298		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000344850		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000542155		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000241391		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000463875		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000545004	ENST00000467352		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000392869		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000409214		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000392867		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000409298		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000344850		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000542155		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000241391		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000463875		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000373287	ENST00000467352		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000392869		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000409214		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000392867		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000409298		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000344850		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000542155		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000241391		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000463875		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
intron-intron	ENST00000479427	ENST00000467352		ChiTaRS3.1			CV337072	FARP2	chr2	242382329	-	GTDC1	chr2	144725369	+
5CDS-3UTR	ENST00000358026	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000358026	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000358026	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000358026	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000358026	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000358026	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000344626	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000429416	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000541122	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000589677	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000444061	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000590574	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000413806	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
5CDS-3UTR	ENST00000450717	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000466801		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000409321		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000409115		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000341369		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000409683		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
3UTR-3UTR	ENST00000538456	ENST00000410064		ChiTaRS3.1			CN347182	SMARCA4	chr19	11145730	+	PTMA	chr2	232576658	+
intron-5UTR	ENST00000315843	ENST00000315843		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000315843	ENST00000464295		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-intron	ENST00000315843	ENST00000461057		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000464295	ENST00000315843		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000464295	ENST00000464295		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-intron	ENST00000464295	ENST00000461057		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000461057	ENST00000315843		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-5UTR	ENST00000461057	ENST00000464295		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-intron	ENST00000461057	ENST00000461057		ChiTaRS3.1			CD638212	GPR156	chr3	119900209	+	GPR156	chr3	119963126	-
intron-intron	ENST00000402198	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402198	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402466	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402466	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000406341	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000406341	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000407969	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000407969	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000302463	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000302463	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000488236	ENST00000261716		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000488236	ENST00000536202		ChiTaRS3.1			AW206562	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-3CDS	ENST00000356093	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000356093	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000398863	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000398863	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000343067	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000343067	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000349460	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000349460	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373800	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373800	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000347529	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000347529	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373798	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373798	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373797	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000373797	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000460378	ENST00000378565		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3CDS	ENST00000460378	ENST00000378549		ChiTaRS3.1			DA268072	EPB41	chr1	29416705	+	ITM2B	chr13	48807528	+
intron-3UTR	ENST00000222005	ENST00000222005		ChiTaRS3.1			AI571632	CDC37	chr19	10501857	+	CDC37	chr19	10501963	-
3UTR-3UTR	ENST00000370558	ENST00000353801		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
3UTR-3UTR	ENST00000370558	ENST00000371646		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
3UTR-3UTR	ENST00000370558	ENST00000371554		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000535010	ENST00000353801		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000535010	ENST00000371646		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000535010	ENST00000371554		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000482504	ENST00000353801		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000482504	ENST00000371646		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-3UTR	ENST00000482504	ENST00000371554		ChiTaRS3.1			BG256202	SH3GLB1	chr1	87211864	+	HSP90AB1	chr6	44221425	+
intron-intron	ENST00000341105	ENST00000390168		ChiTaRS3.1			BE902392	GATA2	chr3	128199662	-	H19	chr11	2018308	-
intron-intron	ENST00000489987	ENST00000390168		ChiTaRS3.1			BE902392	GATA2	chr3	128199662	-	H19	chr11	2018308	-
intron-intron	ENST00000430265	ENST00000390168		ChiTaRS3.1			BE902392	GATA2	chr3	128199662	-	H19	chr11	2018308	-
intron-intron	ENST00000487848	ENST00000390168		ChiTaRS3.1			BE902392	GATA2	chr3	128199662	-	H19	chr11	2018308	-
intron-intron	ENST00000504926	ENST00000316549		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000504926	ENST00000498717		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000306315	ENST00000316549		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000306315	ENST00000498717		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000513985	ENST00000316549		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000513985	ENST00000498717		ChiTaRS3.1			BG999752	ZNF608	chr5	124035130	+	SLC9A9	chr3	143437054	+
intron-intron	ENST00000334256	ENST00000258526		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000334256	ENST00000547057		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000334256	ENST00000551495		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000334256	ENST00000545312		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000469804	ENST00000258526		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000469804	ENST00000547057		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000469804	ENST00000551495		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000469804	ENST00000545312		ChiTaRS3.1			CV428242	KPNA4	chr3	160216778	+	PLXNC1	chr12	94655321	+
intron-intron	ENST00000354905	ENST00000218200		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000370471		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000370477		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000334557		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000439526		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000370475		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000370470		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000440235		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000354905	ENST00000492846		ChiTaRS3.1			BE813282	TMEM207	chr3	190154659	+	FMR1	chrX	147006742	-
intron-intron	ENST00000441917	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000441917	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000541887	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000261819	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000535482	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000544314	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000344395	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000607452		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000303536		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000394666		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000606865		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000458030		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000422521		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000606082		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
intron-intron	ENST00000536366	ENST00000406041		ChiTaRS3.1			BF924122	ANAPC5	chr12	121766987	+	ACYP2	chr2	54365952	-
5CDS-intron	ENST00000372070	ENST00000372070		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000372070	ENST00000351829		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000372070	ENST00000471651		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000372070	ENST00000473038		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000351829	ENST00000372070		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000351829	ENST00000351829		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000351829	ENST00000471651		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
5CDS-intron	ENST00000351829	ENST00000473038		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
intron-intron	ENST00000471651	ENST00000372070		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
intron-intron	ENST00000471651	ENST00000351829		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
intron-intron	ENST00000471651	ENST00000471651		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
intron-intron	ENST00000471651	ENST00000473038		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
3UTR-intron	ENST00000473038	ENST00000372070		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
3UTR-intron	ENST00000473038	ENST00000351829		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
3UTR-intron	ENST00000473038	ENST00000471651		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
3UTR-intron	ENST00000473038	ENST00000473038		ChiTaRS3.1			BF876342	AKR1A1	chr1	46033778	-	AKR1A1	chr1	46034582	-
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000448637	ENST00000312675		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000448637	ENST00000543006		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000312675	ENST00000312675		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000312675	ENST00000543006		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000543006	ENST00000312675		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000543006	ENST00000543006		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000471917	ENST00000312675		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000471917	ENST00000543006		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			AA480632	LPP	chr3	188403327	+	LPP	chr3	188403616	-
intron-3CDS	ENST00000544892	ENST00000356082		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-3CDS	ENST00000544892	ENST00000391911		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-3CDS	ENST00000544892	ENST00000367030		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
3UTR-3CDS	ENST00000320031	ENST00000356082		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
3UTR-3CDS	ENST00000320031	ENST00000391911		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
3UTR-3CDS	ENST00000320031	ENST00000367030		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-3CDS	ENST00000007722	ENST00000356082		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-3CDS	ENST00000007722	ENST00000391911		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-3CDS	ENST00000007722	ENST00000367030		ChiTaRS3.1			CB122452	ITGA3	chr17	48167781	-	LAMB3	chr1	209789971	-
intron-intron	ENST00000380130	ENST00000380130		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000380139		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000530622		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000459716		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380130	ENST00000380133		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380130		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380139		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000530622		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000459716		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380139	ENST00000380133		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380130		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380139		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000530622		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000459716		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000530622	ENST00000380133		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380130		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380139		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000530622		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000459716		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000459716	ENST00000380133		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380130		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380139		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000530622		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000459716		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-intron	ENST00000380133	ENST00000380133		ChiTaRS3.1			BF433332	N4BP2L1	chr13	33002315	+	N4BP2L1	chr13	32999948	-
intron-3UTR	ENST00000346798	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000346798	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000346798	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000354192	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000354192	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000354192	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000348990	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000348990	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000348990	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000357903	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000357903	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000357903	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000358918	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000358918	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000358918	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000359726	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000359726	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000359726	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000448388	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000448388	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000448388	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000440126	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000440126	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000440126	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000439274	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000439274	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000439274	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000474136	ENST00000287263		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-3UTR	ENST00000474136	ENST00000330843		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000522727		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000523182		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000474136	ENST00000524118		ChiTaRS3.1			AK027242	APP	chr21	27538215	-	RAB11FIP1	chr8	37718655	-
intron-intron	ENST00000376980	ENST00000392869		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000409214		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000392867		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000409298		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000344850		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000542155		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000241391		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000463875		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376980	ENST00000467352		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000392869		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000409214		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000392867		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000409298		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000344850		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000542155		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000241391		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000463875		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000376946	ENST00000467352		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000392869		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000409214		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000392867		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000409298		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000344850		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000542155		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000241391		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000463875		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-intron	ENST00000483085	ENST00000467352		ChiTaRS3.1			CV315332	DNAJC1	chr10	22146529	-	GTDC1	chr2	144922652	-
intron-3CDS	ENST00000296252	ENST00000296252		ChiTaRS3.1			AA102322	LIPH	chr3	185252589	+	LIPH	chr3	185251378	-
intron-3CDS	ENST00000296252	ENST00000424591		ChiTaRS3.1			AA102322	LIPH	chr3	185252589	+	LIPH	chr3	185251378	-
intron-3CDS	ENST00000424591	ENST00000296252		ChiTaRS3.1			AA102322	LIPH	chr3	185252589	+	LIPH	chr3	185251378	-
intron-3CDS	ENST00000424591	ENST00000424591		ChiTaRS3.1			AA102322	LIPH	chr3	185252589	+	LIPH	chr3	185251378	-
intron-3UTR	ENST00000250894	ENST00000309859		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000250894	ENST00000567468		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000250894	ENST00000569182		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-3UTR	ENST00000356010	ENST00000309859		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000356010	ENST00000567468		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000356010	ENST00000569182		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-3UTR	ENST00000568271	ENST00000309859		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000568271	ENST00000567468		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000568271	ENST00000569182		ChiTaRS3.1			BQ719332	MAPK8IP3	chr16	1804884	+	GGA2	chr16	23476995	-
intron-intron	ENST00000336199	ENST00000336199		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000366540		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000366539		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000263826		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000336199	ENST00000492957		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000336199		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000366540		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000366539		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000263826		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366540	ENST00000492957		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000336199		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000366540		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000366539		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000263826		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000366539	ENST00000492957		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000336199		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000366540		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000366539		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000263826		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000263826	ENST00000492957		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000336199		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000366540		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000366539		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000263826		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
intron-intron	ENST00000492957	ENST00000492957		ChiTaRS3.1			AW901932	AKT3	chr1	244006586	+	AKT3	chr1	243708811	+
3UTR-3UTR	ENST00000395246	ENST00000395246		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000395246	ENST00000504701		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000395246	ENST00000503291		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000395246	ENST00000360515		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000395246	ENST00000505065		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000395246		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000504701	ENST00000504701		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000504701	ENST00000503291		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000360515		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000505065		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000395246		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000503291	ENST00000504701		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000503291	ENST00000503291		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000360515		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000505065		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000395246		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000360515	ENST00000504701		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000360515	ENST00000503291		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000360515		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000505065		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000395246		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000505065	ENST00000504701		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000505065	ENST00000503291		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000360515		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000505065		ChiTaRS3.1			BU675572	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3CDS	ENST00000480912	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000480912	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000480912	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000395728	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000395728	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000395728	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375528	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375528	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375528	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375530	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375530	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375530	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375537	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375537	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000375537	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000498185	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000498185	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000498185	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000415323	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000415323	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000415323	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450323	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450323	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450323	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000440987	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000440987	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000440987	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000421926	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000421926	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000421926	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000551865	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000551865	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000551865	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497104	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497104	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497104	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000436403	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000436403	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000436403	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000443951	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000443951	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000443951	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420874	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420874	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420874	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450075	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450075	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450075	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000552339	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000552339	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000552339	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497361	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497361	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000497361	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420930	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420930	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420930	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000428442	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000428442	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000428442	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450229	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450229	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000450229	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000429506	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000429506	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000429506	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000547244	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000547244	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000547244	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000467139	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000467139	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000467139	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000446303	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000446303	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000446303	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000427405	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000427405	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000427405	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000454705	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000454705	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000454705	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420336	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420336	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000420336	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000546877	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000546877	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000546877	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400006	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400006	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400006	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000469681	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000469681	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000469681	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400008	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400008	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000400008	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383372	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383372	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383372	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383373	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383373	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000383373	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000550866	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000550866	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000550866	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000425250	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000425250	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000425250	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000487513	ENST00000388837		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000487513	ENST00000550600		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000487513	ENST00000388835		ChiTaRS3.1			BF769712	EHMT2	chr6	3184389	+	KRT18	chr12	53345587	+
intron-3CDS	ENST00000245838	ENST00000337002		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000245838	ENST00000480708		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3UTR	ENST00000245838	ENST00000470355		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000355725	ENST00000337002		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000355725	ENST00000480708		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3UTR	ENST00000355725	ENST00000470355		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000491737	ENST00000337002		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000491737	ENST00000480708		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3UTR	ENST00000491737	ENST00000470355		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000497887	ENST00000337002		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3CDS	ENST00000497887	ENST00000480708		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
intron-3UTR	ENST00000497887	ENST00000470355		ChiTaRS3.1			AW362972	THOC2	chrX	122761917	-	SEC62	chr3	169706028	+
5CDS-intron	ENST00000359651	ENST00000359651		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000367284		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000367283		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000359651	ENST00000495848		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000359651		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000367284		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000367283		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367284	ENST00000495848		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000359651		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000367284		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000367283		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
5CDS-intron	ENST00000367283	ENST00000495848		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000359651		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000367284		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000367283		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-intron	ENST00000495848	ENST00000495848		ChiTaRS3.1			BF804202	ELF3	chr1	201983002	+	ELF3	chr1	201983153	-
intron-3UTR	ENST00000555997	ENST00000302068		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-intron	ENST00000555997	ENST00000509493		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000555997	ENST00000502545		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000439696	ENST00000302068		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-intron	ENST00000439696	ENST00000509493		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000439696	ENST00000502545		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000336440	ENST00000302068		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-intron	ENST00000336440	ENST00000509493		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000336440	ENST00000502545		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000408913	ENST00000302068		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-intron	ENST00000408913	ENST00000509493		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000408913	ENST00000502545		ChiTaRS3.1			BG568132	ZFP36L1	chr14	69255154	+	FGB	chr4	155491882	+
intron-3UTR	ENST00000295633	ENST00000295633		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000295633	ENST00000424703		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000295633	ENST00000485968		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-3UTR	ENST00000424703	ENST00000295633		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000424703	ENST00000424703		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000424703	ENST00000485968		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-3UTR	ENST00000485968	ENST00000295633		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000485968	ENST00000424703		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000485968	ENST00000485968		ChiTaRS3.1			BF992532	FSTL1	chr3	120113504	+	FSTL1	chr3	120114094	-
intron-intron	ENST00000356554	ENST00000356554		ChiTaRS3.1			AI768882	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			AI768882	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000356554		ChiTaRS3.1			AI768882	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			AI768882	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000314583	ENST00000262510		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000314583	ENST00000436936		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000314583	ENST00000308149		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000314583	ENST00000543141		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000314583	ENST00000539144		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000428394	ENST00000262510		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000428394	ENST00000436936		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000428394	ENST00000308149		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000428394	ENST00000543141		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000428394	ENST00000539144		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000473883	ENST00000262510		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000473883	ENST00000436936		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000473883	ENST00000308149		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000473883	ENST00000543141		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000473883	ENST00000539144		ChiTaRS3.1			BF898642	HCLS1	chr3	121353198	+	NLRC5	chr16	57073891	-
intron-intron	ENST00000449111	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000449111	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000449111	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-3UTR	ENST00000444489	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000444489	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000458274	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000458274	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000450989	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000450989	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000452864	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000452864	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000432696	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000432696	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000425602	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000425602	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-3UTR	ENST00000455777	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
3UTR-intron	ENST00000455777	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000449111		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000444489		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000458274		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000450989		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000452864		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000432696		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-3UTR	ENST00000413076	ENST00000425602		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000455777		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
intron-intron	ENST00000413076	ENST00000413076		ChiTaRS3.1			BE694412	LINC00894	chrX	149130935	+	LINC00894	chrX	149116267	+
Frame-shit	ENST00000406610	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000406610	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-3CDS	ENST00000462231	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-intron	ENST00000462231	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000349953	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000349953	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000358768	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000358768	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
In-frame	ENST00000351153	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
5CDS-intron	ENST00000351153	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-3CDS	ENST00000488622	ENST00000406610		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000462231		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000349953		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000358768		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000351153		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
3UTR-intron	ENST00000488622	ENST00000488622		ChiTaRS3.1			AF466152	PARD3B	chr2	206480537	+	PARD3B	chr2	205410516	+
intron-3UTR	ENST00000371068	ENST00000372072		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000371068	ENST00000372073		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000371068	ENST00000372068		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000371068	ENST00000288381		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-intron	ENST00000371068	ENST00000464177		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000491749	ENST00000372072		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000491749	ENST00000372073		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000491749	ENST00000372068		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000491749	ENST00000288381		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-intron	ENST00000491749	ENST00000464177		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000433625	ENST00000372072		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000433625	ENST00000372073		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000433625	ENST00000372068		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000433625	ENST00000288381		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-intron	ENST00000433625	ENST00000464177		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000538167	ENST00000372072		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000538167	ENST00000372073		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000538167	ENST00000372068		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3UTR	ENST00000538167	ENST00000288381		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-intron	ENST00000538167	ENST00000464177		ChiTaRS3.1			BC019032	EFHC1	chr6	52366492	+	TMEM164	chrX	109419703	+
intron-3CDS	ENST00000297268	ENST00000400532		ChiTaRS3.1			BF932982	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000480456		ChiTaRS3.1			BF932982	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000312957		ChiTaRS3.1			BF932982	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-3CDS	ENST00000297268	ENST00000425221		ChiTaRS3.1			BF932982	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
intron-intron	ENST00000297268	ENST00000477351		ChiTaRS3.1			BF932982	COL1A2	chr7	94059225	-	JAM2	chr21	27071148	-
3UTR-intron	ENST00000262124	ENST00000373627		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
3UTR-intron	ENST00000262124	ENST00000373616		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
3UTR-intron	ENST00000262124	ENST00000471737		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
3UTR-intron	ENST00000262124	ENST00000538808		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000399892	ENST00000373627		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000399892	ENST00000373616		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000399892	ENST00000471737		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000399892	ENST00000538808		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000592582	ENST00000373627		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000592582	ENST00000373616		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000592582	ENST00000471737		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
intron-intron	ENST00000592582	ENST00000538808		ChiTaRS3.1			BE772602	SEH1L	chr18	12986710	+	MTCH1	chr6	36939095	-
3UTR-3UTR	ENST00000578646	ENST00000578646		ChiTaRS3.1			BQ187522	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
3UTR-3UTR	ENST00000578646	ENST00000261537		ChiTaRS3.1			BQ187522	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
5CDS-3UTR	ENST00000261537	ENST00000578646		ChiTaRS3.1			BQ187522	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
5CDS-3UTR	ENST00000261537	ENST00000261537		ChiTaRS3.1			BQ187522	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
intron-intron	ENST00000380050	ENST00000335007		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000380050	ENST00000340766		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000380050	ENST00000546933		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000380050	ENST00000550991		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000380050	ENST00000551676		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000380050	ENST00000551690		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000335007		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000340766		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000546933		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000550991		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000551676		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000265741	ENST00000551690		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000335007		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000340766		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000546933		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000550991		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000551676		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000406263	ENST00000551690		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000335007		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000340766		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000546933		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000550991		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000551676		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000436577	ENST00000551690		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000335007		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000340766		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000546933		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000550991		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000551676		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000496279	ENST00000551690		ChiTaRS3.1			BF891152	CDK14	chr7	90477739	-	PPP1CC	chr12	111171933	+
intron-intron	ENST00000438796	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000438796		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000414675		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000441090		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000334859		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000425562		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000493726		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000536618		ChiTaRS3.1			CK825012	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000264932	ENST00000441750		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000264932	ENST00000281513		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000504309	ENST00000441750		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000504309	ENST00000281513		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000510361	ENST00000441750		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000510361	ENST00000281513		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000507522	ENST00000441750		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-intron	ENST00000507522	ENST00000281513		ChiTaRS3.1			BG490462	SDHA	chr5	238273	+	NBAS	chr2	15647766	-
intron-5UTR	ENST00000437048	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000437048	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000437048	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000437048	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000574029	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000574029	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000574029	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000574029	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000576149	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000576149	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000576149	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000576149	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000446250	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000446250	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000446250	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000446250	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000291074	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000291074	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000291074	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000291074	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000571805	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000571805	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000571805	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000571805	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000401468	ENST00000556539		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000401468	ENST00000314128		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000401468	ENST00000557235		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
intron-5UTR	ENST00000401468	ENST00000418572		ChiTaRS3.1			BE349542	VPS53	chr17	418558	+	STAT2	chr12	56743265	+
5CDS-5UTR	ENST00000550831	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000550831	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000550831	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000550831	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000550831	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000550831	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000550831	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000355445	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000355445	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000355445	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000355445	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000355445	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000355445	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000355445	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000354825	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000354825	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000354825	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000354825	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000354825	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000354825	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000354825	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000437003	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000437003	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000437003	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000437003	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000437003	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000437003	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000437003	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000552374	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000552374	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000552374	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000552374	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000552374	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000552374	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000552374	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000549537	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000549537	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000549537	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000549537	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000549537	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-5UTR	ENST00000549537	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000549537	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-5UTR	ENST00000552839	ENST00000550831		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-intron	ENST00000552839	ENST00000355445		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-5UTR	ENST00000552839	ENST00000354825		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-5UTR	ENST00000552839	ENST00000437003		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-5UTR	ENST00000552839	ENST00000552374		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-5UTR	ENST00000552839	ENST00000549537		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
intron-intron	ENST00000552839	ENST00000552839		ChiTaRS3.1			BF953602	TMEM116	chr12	112371690	-	TMEM116	chr12	112381175	-
5CDS-intron	ENST00000382679	ENST00000369291		ChiTaRS3.1			AF119902	DEFA1	chr8	6835175	-	RNF115	chr1	145635284	-
5CDS-intron	ENST00000382692	ENST00000369291		ChiTaRS3.1			AF119902	DEFA1	chr8	6835175	-	RNF115	chr1	145635284	-
intron-3CDS	ENST00000375217	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375217	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375217	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375217	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375217	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375226	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375226	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375226	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375226	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375226	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375267	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375267	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375267	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375267	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375267	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375254	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375254	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375254	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375254	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375254	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375225	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375225	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375225	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375225	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375225	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000429347	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000429347	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000429347	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000429347	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000429347	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375224	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375224	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375224	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375224	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375224	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000543981	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000543981	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000543981	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000543981	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000543981	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000467272	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000467272	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000467272	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000467272	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000467272	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375218	ENST00000375217		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375218	ENST00000375226		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375218	ENST00000375267		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-3CDS	ENST00000375218	ENST00000375254		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000375225		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000429347		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000375224		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000543981		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000467272		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000375218	ENST00000375218		ChiTaRS3.1			BP355292	UBR4	chr1	19433112	-	UBR4	chr1	19446193	-
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW856562	LAMC1	chr1	183003441	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW856562	LAMC1	chr1	183003441	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW856562	LAMC1	chr1	183003441	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW856562	LAMC1	chr1	183003441	-	LAMC1	chr1	183048096	+
5CDS-3UTR	ENST00000315717	ENST00000320954		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
5CDS-3UTR	ENST00000315717	ENST00000449224		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
5CDS-intron	ENST00000315717	ENST00000485310		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
5CDS-3UTR	ENST00000295685	ENST00000320954		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
5CDS-3UTR	ENST00000295685	ENST00000449224		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
5CDS-intron	ENST00000295685	ENST00000485310		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
3UTR-3UTR	ENST00000477992	ENST00000320954		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
3UTR-3UTR	ENST00000477992	ENST00000449224		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
3UTR-intron	ENST00000477992	ENST00000485310		ChiTaRS3.1			AW385342	ARPC2	chr2	219114157	-	CRTAP	chr3	33184084	-
intron-intron	ENST00000603700	ENST00000603700		ChiTaRS3.1			AI909232	URGCP-MRPS24	chr7	43917141	-	URGCP-MRPS24	chr7	43918636	-
3UTR-3UTR	ENST00000377532	ENST00000377532		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
3UTR-3UTR	ENST00000377532	ENST00000361923		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
3UTR-intron	ENST00000377532	ENST00000377541		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
3UTR-3UTR	ENST00000361923	ENST00000377532		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
3UTR-3UTR	ENST00000361923	ENST00000361923		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
3UTR-intron	ENST00000361923	ENST00000377541		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
intron-3UTR	ENST00000377541	ENST00000377532		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
intron-3UTR	ENST00000377541	ENST00000361923		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
intron-intron	ENST00000377541	ENST00000377541		ChiTaRS3.1			AA862192	PER3	chr1	7904276	+	PER3	chr1	7904362	-
intron-intron	ENST00000440491	ENST00000369219		ChiTaRS3.1			BX647792	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000338347	ENST00000369219		ChiTaRS3.1			BX647792	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000468645	ENST00000369219		ChiTaRS3.1			BX647792	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000281815	ENST00000369219		ChiTaRS3.1			BX647792	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000366767	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366767	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366769	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366769	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366764	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366764	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000334218	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000334218	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366766	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366766	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000535525	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000535525	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366765	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000366765	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000488131	ENST00000367033		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000488131	ENST00000483048		ChiTaRS3.1			BF996262	CDC42BPA	chr1	227479003	+	PLXNA2	chr1	208371621	-
intron-intron	ENST00000539801	ENST00000539801		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000381652		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000544510		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000487310		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000539801		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000381652		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000544510		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000487310		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000539801		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000381652		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000544510		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000487310		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000539801		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000381652		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000544510		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000487310		ChiTaRS3.1			BF890982	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
Frame-shit	ENST00000369851	ENST00000369851		ChiTaRS3.1			CA307392	GNAI3	chr1	110134771	-	GNAI3	chr1	110134746	+
intron-3UTR	ENST00000379056	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000379056	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379056	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379056	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379056	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000379056	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000529421	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000529421	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000529421	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000529421	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000529421	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000529421	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000530705	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000530705	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000530705	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000530705	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000530705	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000530705	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379060	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000379060	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379060	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379060	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379060	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000379060	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379055	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000379055	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379055	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379055	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000379055	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000379055	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000309246	ENST00000379056		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-5UTR	ENST00000309246	ENST00000529421		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000309246	ENST00000530705		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000309246	ENST00000379060		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-3UTR	ENST00000309246	ENST00000379055		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000309246	ENST00000309246		ChiTaRS3.1			CB306762	TPT1	chr13	45911450	+	TPT1	chr13	45911478	-
intron-intron	ENST00000430853	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430853	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000424161	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000419253	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454741	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000453632	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000454996	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428818	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000435348	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000434221	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000437713	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417381	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000430525	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000452612	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000425112	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000417497	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000428584	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000433317	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000430853		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000424161		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000419253		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000454741		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000453632		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000454996		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000428818		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000435348		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000434221		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000437713		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000417381		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000430525		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000452612		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000425112		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000417497		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000428584		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000433317		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
intron-intron	ENST00000426594	ENST00000426594		ChiTaRS3.1			AL135272	TTC28-AS1	chr22	28319322	-	TTC28-AS1	chr22	28319409	+
3UTR-3CDS	ENST00000388825	ENST00000388825		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
3UTR-intron	ENST00000388825	ENST00000521722		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
3UTR-intron	ENST00000388825	ENST00000517973		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-3CDS	ENST00000521722	ENST00000388825		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-intron	ENST00000521722	ENST00000521722		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-intron	ENST00000521722	ENST00000517973		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-3CDS	ENST00000517973	ENST00000388825		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-intron	ENST00000517973	ENST00000521722		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-intron	ENST00000517973	ENST00000517973		ChiTaRS3.1			BG927502	GPX3	chr5	150407992	+	GPX3	chr5	150407030	+
intron-intron	ENST00000556679	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000556679		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000456570		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000477310		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000425368		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000497841		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000417261		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000427888		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000459734		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000455591		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000433503		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000474621		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000424727		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000436692		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000473139		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000399981		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419920		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000465211		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000375455		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000489605		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000426239		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419411		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000460958		ChiTaRS3.1			AW363522	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000549275	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549275	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000551245	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000380327	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000548311	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000550709	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-intron	ENST00000549534	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000257909	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000549275		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000551245		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000380327		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000548311		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000550709		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000549534		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000257909		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
5CDS-intron	ENST00000547923	ENST00000547923		ChiTaRS3.1			AA704972	TROAP	chr12	49725003	-	TROAP	chr12	49724279	+
intron-3CDS	ENST00000264094	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000264094	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000264094	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000264094	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000264094	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409249	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409249	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409249	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409249	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000409249	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000393937	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000393937	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000393937	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000393937	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000393937	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409549	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409549	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409549	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409549	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000409549	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409986	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409986	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409986	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000409986	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000409986	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000484369	ENST00000381232		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000484369	ENST00000555818		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000484369	ENST00000358550		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3CDS	ENST00000484369	ENST00000537413		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-3UTR	ENST00000484369	ENST00000554874		ChiTaRS3.1			BF752032	LOXL3	chr2	74765721	+	SIPA1L1	chr14	72196796	-
intron-intron	ENST00000491455	ENST00000330909		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000491455	ENST00000402939		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000491455	ENST00000483466		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000491455	ENST00000497477		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000491455	ENST00000470990		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000415093	ENST00000330909		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000415093	ENST00000402939		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000415093	ENST00000483466		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000415093	ENST00000497477		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000415093	ENST00000470990		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000366957	ENST00000330909		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000366957	ENST00000402939		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000366957	ENST00000483466		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000366957	ENST00000497477		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-intron	ENST00000366957	ENST00000470990		ChiTaRS3.1			AW177652	SMYD2	chr1	214462008	+	MAGI1	chr3	65813306	-
intron-3UTR	ENST00000494857	ENST00000360214		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000494857	ENST00000360938		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000522656	ENST00000360214		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000522656	ENST00000360938		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000470360	ENST00000360214		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000470360	ENST00000360938		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000004531	ENST00000360214		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000004531	ENST00000360938		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000398090	ENST00000360214		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000398090	ENST00000360938		ChiTaRS3.1			BF086382	SLC7A2	chr8	17395576	+	ETS2	chr21	40196451	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394464	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394464	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394464	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394464	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394464	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000343796	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000343796	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000415690	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000415690	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000424646	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000424646	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504572	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504572	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394466	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000394466	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000231509	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000231509	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000416954	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000416954	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000503201	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000503201	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504336	ENST00000415690		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000424646		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000504572		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000394466		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-3UTR	ENST00000504336	ENST00000231509		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			CB219072	NR3C1	chr5	142660302	+	NR3C1	chr5	142660789	-
3UTR-3UTR	ENST00000345003	ENST00000345003		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000345003	ENST00000296048		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-intron	ENST00000345003	ENST00000483267		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000345003	ENST00000484197		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000345003	ENST00000479119		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000296048	ENST00000345003		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000296048	ENST00000296048		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-intron	ENST00000296048	ENST00000483267		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000296048	ENST00000484197		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000296048	ENST00000479119		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000483267	ENST00000345003		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000483267	ENST00000296048		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-intron	ENST00000483267	ENST00000483267		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000483267	ENST00000484197		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000483267	ENST00000479119		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000484197	ENST00000345003		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000484197	ENST00000296048		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-intron	ENST00000484197	ENST00000483267		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000484197	ENST00000484197		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-3UTR	ENST00000484197	ENST00000479119		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000479119	ENST00000345003		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000479119	ENST00000296048		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-intron	ENST00000479119	ENST00000483267		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000479119	ENST00000484197		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
intron-3UTR	ENST00000479119	ENST00000479119		ChiTaRS3.1			BU677172	GYG1	chr3	148745192	-	GYG1	chr3	148745039	+
3UTR-intron	ENST00000244745	ENST00000398016		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
3UTR-intron	ENST00000244745	ENST00000359742		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
3UTR-intron	ENST00000244745	ENST00000286445		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
3UTR-intron	ENST00000244745	ENST00000542021		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
intron-intron	ENST00000543472	ENST00000398016		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
intron-intron	ENST00000543472	ENST00000359742		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
intron-intron	ENST00000543472	ENST00000286445		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
intron-intron	ENST00000543472	ENST00000542021		ChiTaRS3.1			AW139952	SOX4	chr6	21596382	-	GRIP1	chr12	66751619	+
intron-3UTR	ENST00000354960	ENST00000400198		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-5UTR	ENST00000354960	ENST00000472226		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000354960	ENST00000375926		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000394439	ENST00000400198		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-5UTR	ENST00000394439	ENST00000472226		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000394439	ENST00000375926		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000264805	ENST00000400198		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-5UTR	ENST00000264805	ENST00000472226		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000264805	ENST00000375926		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000512739	ENST00000400198		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-5UTR	ENST00000512739	ENST00000472226		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
intron-3UTR	ENST00000512739	ENST00000375926		ChiTaRS3.1			BG996672	PDE5A	chr4	120471408	+	ARGLU1	chr13	107196325	-
5CDS-intron	ENST00000370155	ENST00000443326		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000414585		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000540643		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000432498		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000443011		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000400289		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000400288		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370155	ENST00000474741		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000443326		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000414585		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000540643		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000432498		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000443011		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000400289		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000400288		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000465289	ENST00000474741		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000443326		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000414585		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000540643		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000432498		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000443011		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000400289		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000400288		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000427993	ENST00000474741		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000443326		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000414585		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000540643		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000432498		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000443011		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000400289		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000400288		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
5CDS-intron	ENST00000370153	ENST00000474741		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000443326		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000414585		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000540643		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000432498		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000443011		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000400289		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000400288		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-intron	ENST00000370156	ENST00000474741		ChiTaRS3.1			BI000022	SLC35A3	chr1	100459112	+	SFI1	chr22	32002605	+
intron-3CDS	ENST00000564353	ENST00000266041		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000564353	ENST00000346281		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000564353	ENST00000485816		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000564353	ENST00000406595		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000564353	ENST00000434759		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000564353	ENST00000467462		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000345005	ENST00000266041		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000345005	ENST00000346281		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000345005	ENST00000485816		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000345005	ENST00000406595		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000345005	ENST00000434759		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000345005	ENST00000467462		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000395066	ENST00000266041		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000395066	ENST00000346281		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000395066	ENST00000485816		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000395066	ENST00000406595		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000395066	ENST00000434759		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000395066	ENST00000467462		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000348245	ENST00000266041		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000348245	ENST00000346281		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000348245	ENST00000485816		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000348245	ENST00000406595		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000348245	ENST00000434759		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000348245	ENST00000467462		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000352989	ENST00000266041		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000352989	ENST00000346281		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000352989	ENST00000485816		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-3CDS	ENST00000352989	ENST00000406595		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000352989	ENST00000434759		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000352989	ENST00000467462		ChiTaRS3.1			AI133372	CLK3	chr15	74891910	+	ITIH4	chr3	52851061	-
intron-intron	ENST00000425708	ENST00000374825		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000496118		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000580234		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000374831		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000395289		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000443797		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000395287		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000449085		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000438194		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000466744		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000383108		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000547895		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000549843		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000442863		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000552513		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000442219		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000498329		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000488549		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000425201		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000399529		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000399528		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000550142		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000548837		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000399527		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000549236		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000482105		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000414731		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000449118		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000550598		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000479973		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000546777		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000450320		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000547286		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000552587		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000549126		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000553146		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000448067		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000436979		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000425708	ENST00000466208		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000374825		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000496118		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000580234		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000374831		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000395289		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000443797		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000395287		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000449085		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000438194		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000466744		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000383108		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000547895		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000549843		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000442863		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000552513		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000442219		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000498329		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000488549		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000425201		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000399529		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000399528		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000550142		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000548837		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000399527		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000549236		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000482105		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000414731		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000449118		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000550598		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000479973		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000546777		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000450320		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000547286		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000552587		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000549126		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000553146		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000448067		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000436979		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-intron	ENST00000396077	ENST00000466208		ChiTaRS3.1			BE933782	ZNF445	chr3	44490620	-	BRD2	chr6	4428964	-
intron-3CDS	ENST00000263398	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000263398	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000263398	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000526025	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000526025	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000526025	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000449691	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000449691	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000449691	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000360158	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000360158	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000360158	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000415148	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000415148	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000415148	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000437706	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000437706	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000437706	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000433354	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000433354	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000433354	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000428726	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000428726	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000428726	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000526669	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000526669	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000526669	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000433892	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000433892	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000433892	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000278386	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000278386	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000278386	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000434472	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000434472	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000434472	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000352818	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000352818	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000352818	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000528922	ENST00000370483		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000528922	ENST00000016171		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-intron	ENST00000528922	ENST00000497381		ChiTaRS3.1			BI038422	CD44	chr11	35194829	-	COX15	chr10	101486747	+
intron-3CDS	ENST00000375068	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375068	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375068	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375068	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375068	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375068	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000375068	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375053	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000375053	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000347546	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000347546	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375062	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000375062	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000218439	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000218439	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375058	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000375058	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000375060	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000375060	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000396224	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000396224	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000233114		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000409908		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000409476		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000539945		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000544381		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-3CDS	ENST00000497484	ENST00000394423		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000497484	ENST00000462944		ChiTaRS3.1			AA092172	MAGED2	chrX	54837913	+	MDH1	chr2	63831921	+
intron-intron	ENST00000324170	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000324170	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000355372	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000355372	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000509437	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000509437	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000513848	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000513848	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000513541	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000513541	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000508080	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000508080	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000509008	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000509008	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000504170	ENST00000370203		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
intron-intron	ENST00000504170	ENST00000463375		ChiTaRS3.1			AW362912	ZCCHC10	chr5	132339336	+	TMEM56	chr1	95576584	-
3UTR-intron	ENST00000409419	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409419	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-3UTR	ENST00000409419	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409419	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409419	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409419	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409587	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409587	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-3UTR	ENST00000409587	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409587	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409587	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409587	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-intron	ENST00000594085	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-5UTR	ENST00000594085	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-3UTR	ENST00000594085	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-5UTR	ENST00000594085	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-intron	ENST00000594085	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
intron-5UTR	ENST00000594085	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409735	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409735	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-3UTR	ENST00000409735	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409735	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409735	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409735	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000356508	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000356508	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-3UTR	ENST00000356508	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000356508	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000356508	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000356508	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409281	ENST00000409419		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409281	ENST00000409587		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-3UTR	ENST00000409281	ENST00000594085		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409281	ENST00000409735		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-intron	ENST00000409281	ENST00000356508		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000409281	ENST00000409281		ChiTaRS3.1			CA310232	PLD3	chr19	40884213	-	PLD3	chr19	40871778	+
3UTR-5UTR	ENST00000290541	ENST00000295591		ChiTaRS3.1			BE179662	PSMB4	chr1	151374318	-	IGFN1	chr1	201178364	+
3UTR-5UTR	ENST00000290541	ENST00000335211		ChiTaRS3.1			BE179662	PSMB4	chr1	151374318	-	IGFN1	chr1	201178364	+
3UTR-intron	ENST00000290541	ENST00000451870		ChiTaRS3.1			BE179662	PSMB4	chr1	151374318	-	IGFN1	chr1	201178364	+
intron-5UTR	ENST00000518164	ENST00000419152		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000518164	ENST00000532400		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000518164	ENST00000532741		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000518164	ENST00000317198		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000526838		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000442189		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000528610		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000423316		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000395119		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000529272		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000531621		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000524624		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000518164	ENST00000531770		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000419152		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000521291	ENST00000532400		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000521291	ENST00000532741		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000521291	ENST00000317198		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000526838		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000442189		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000528610		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000423316		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000395119		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000529272		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000531621		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000524624		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000521291	ENST00000531770		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000419152		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000396070	ENST00000532400		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000396070	ENST00000532741		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000396070	ENST00000317198		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000526838		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000442189		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000528610		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000423316		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000395119		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000529272		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000531621		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000524624		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000396070	ENST00000531770		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000419152		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000287038	ENST00000532400		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000287038	ENST00000532741		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000287038	ENST00000317198		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000526838		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000442189		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000528610		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000423316		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000395119		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000529272		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000531621		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000524624		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000287038	ENST00000531770		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000419152		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000523172	ENST00000532400		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000523172	ENST00000532741		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000523172	ENST00000317198		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000526838		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000442189		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000528610		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000423316		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000395119		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000529272		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000531621		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000524624		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-5UTR	ENST00000523172	ENST00000531770		ChiTaRS3.1			BC008012	RPL30	chr8	99057600	+	EEF1D	chr8	144679574	-
intron-intron	ENST00000265162	ENST00000397527		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000265162	ENST00000342580		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000265162	ENST00000476146		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000265162	ENST00000397524		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000504100	ENST00000397527		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000504100	ENST00000342580		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000504100	ENST00000476146		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-intron	ENST00000504100	ENST00000397524		ChiTaRS3.1			CD700372	ENPEP	chr4	111443627	+	CEP250	chr20	34075507	-
intron-3CDS	ENST00000262384	ENST00000262384		ChiTaRS3.1			AW663512	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000262384	ENST00000565423		ChiTaRS3.1			AW663512	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-3CDS	ENST00000565423	ENST00000262384		ChiTaRS3.1			AW663512	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000565423	ENST00000565423		ChiTaRS3.1			AW663512	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000285279	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000285279		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000433959		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000545390		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428648		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428097		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000418904		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000454227		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000453256		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000427700		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000471168		ChiTaRS3.1			AW243532	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000335999	ENST00000376621		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000383450		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000441604		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000550904		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000428189		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000551708		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000437917		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000548423		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000383596		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000550942		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000454829		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000335999	ENST00000552589		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-3UTR	ENST00000335999	ENST00000417834		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-3UTR	ENST00000335999	ENST00000551903		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000376621		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000383450		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000441604		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000550904		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000428189		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000551708		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000437917		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000548423		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000383596		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000550942		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000454829		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-intron	ENST00000480927	ENST00000552589		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-3UTR	ENST00000480927	ENST00000417834		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-3UTR	ENST00000480927	ENST00000551903		ChiTaRS3.1			BF929762	NCKAP5L	chr12	50186066	+	GNL1	chr6	1844152	-
intron-3CDS	ENST00000339594	ENST00000339594		ChiTaRS3.1			BE813822	BAZ1B	chr7	72891983	+	BAZ1B	chr7	72891837	-
intron-3CDS	ENST00000339594	ENST00000404251		ChiTaRS3.1			BE813822	BAZ1B	chr7	72891983	+	BAZ1B	chr7	72891837	-
intron-3CDS	ENST00000404251	ENST00000339594		ChiTaRS3.1			BE813822	BAZ1B	chr7	72891983	+	BAZ1B	chr7	72891837	-
intron-3CDS	ENST00000404251	ENST00000404251		ChiTaRS3.1			BE813822	BAZ1B	chr7	72891983	+	BAZ1B	chr7	72891837	-
intron-intron	ENST00000397338	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000397338	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000397338	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000397338	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000282512	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000282512	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000282512	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000282512	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000381937	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000381937	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000381937	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000381937	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000511613	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000511613	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000511613	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000511613	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000506945	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000506945	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000506945	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000506945	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000514504	ENST00000303113		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000514504	ENST00000453626		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000514504	ENST00000303071		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-intron	ENST00000514504	ENST00000432378		ChiTaRS3.1			AI003822	NADK2	chr5	36193315	+	DONSON	chr21	35198933	-
intron-3UTR	ENST00000535572	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000535572	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000535572	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000535572	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000537687	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000537687	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000537687	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000537687	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000315939	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000315939	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000315939	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000315939	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000447667	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000447667	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000447667	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000447667	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000530271	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000530271	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000530271	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000530271	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000540360	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000540360	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000540360	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000540360	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000340908	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000340908	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000340908	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000340908	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000574564	ENST00000394464		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000574564	ENST00000343796		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-3UTR	ENST00000574564	ENST00000415690		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000424646		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000504572		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000394466		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000231509		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000416954		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000503201		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000574564	ENST00000504336		ChiTaRS3.1			AW800842	WNK1	chr12	948754	-	NR3C1	chr5	142657912	+
intron-intron	ENST00000367194	ENST00000357710		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000324501		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000344094		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000261970		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394164		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000557511		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000406768		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000394157		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000367194	ENST00000553447		ChiTaRS3.1			BI055792	KISS1	chr1	204165049	+	PSEN1	chr14	73614796	-
intron-intron	ENST00000297784	ENST00000338252		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000508830		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000359176		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000395812		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000325674		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000395813		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000510756		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000508608		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000341926		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000511049		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000309190		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000509903		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000511782		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000504465		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000348386		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000508579		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000297784	ENST00000515663		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000338252		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000508830		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000359176		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000395812		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000325674		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000395813		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000510756		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000508608		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000341926		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000511049		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000309190		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000509903		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000511782		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000504465		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000348386		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000508579		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000340019	ENST00000515663		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000338252		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000508830		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000359176		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000395812		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000325674		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000395813		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000510756		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000508608		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000341926		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000511049		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000309190		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000509903		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000511782		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000504465		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000348386		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000508579		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000396237	ENST00000515663		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000338252		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000508830		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000359176		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000395812		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000325674		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000395813		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000510756		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000508608		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000341926		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000511049		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000309190		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000509903		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000511782		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000504465		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000348386		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000508579		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000486417	ENST00000515663		ChiTaRS3.1			BF989792	TMC1	chr9	75386330	-	CAST	chr5	96054645	+
intron-intron	ENST00000401903	ENST00000289119		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000401903	ENST00000580981		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000401903	ENST00000578270		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000401903	ENST00000579875		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000316495	ENST00000289119		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000316495	ENST00000580981		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000316495	ENST00000578270		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000316495	ENST00000579875		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000478137	ENST00000289119		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000478137	ENST00000580981		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000478137	ENST00000578270		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000478137	ENST00000579875		ChiTaRS3.1			BE074612	ZFAND2A	chr7	1193724	+	ABHD3	chr18	19261747	-
intron-intron	ENST00000379214	ENST00000298310		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000379214	ENST00000382135		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000379214	ENST00000545773		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000379214	ENST00000556925		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000379214	ENST00000546046		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000379214	ENST00000556672		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000298310		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000382135		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000545773		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000556925		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000546046		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000389858	ENST00000556672		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000298310		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000382135		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000545773		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000556925		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000546046		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000480977	ENST00000556672		ChiTaRS3.1			BE148612	LGR4	chr11	27389621	+	NEMF	chr14	50190878	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			BQ368952	INS-IGF2	chr11	2154828	+	INS-IGF2	chr11	2154943	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			BQ368952	INS-IGF2	chr11	2154828	+	INS-IGF2	chr11	2154943	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			BQ368952	INS-IGF2	chr11	2154828	+	INS-IGF2	chr11	2154943	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			BQ368952	INS-IGF2	chr11	2154828	+	INS-IGF2	chr11	2154943	-
intron-intron	ENST00000263390	ENST00000263390		ChiTaRS3.1			BG953012	MED26	chr19	16696010	+	MED26	chr19	16695926	-
intron-intron	ENST00000523719	ENST00000196169		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000377894		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000535286		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000377881		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000463109		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000196169		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000377894		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000535286		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000377881		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000463109		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000196169		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000377894		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000535286		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000377881		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000463109		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000196169		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000377894		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000535286		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000377881		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000463109		ChiTaRS3.1			AU137042	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-3UTR	ENST00000321728	ENST00000356842		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000321728	ENST00000359629		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000321728	ENST00000538214		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000321728	ENST00000537768		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000321728	ENST00000335712		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000321728	ENST00000477659		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000321728	ENST00000358510		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000303531	ENST00000356842		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000303531	ENST00000359629		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000303531	ENST00000538214		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000303531	ENST00000537768		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000303531	ENST00000335712		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000303531	ENST00000477659		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000303531	ENST00000358510		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000482000	ENST00000356842		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000482000	ENST00000359629		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000482000	ENST00000538214		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000482000	ENST00000537768		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000482000	ENST00000335712		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000482000	ENST00000477659		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000482000	ENST00000358510		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000498058	ENST00000356842		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-3UTR	ENST00000498058	ENST00000359629		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000498058	ENST00000538214		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000498058	ENST00000537768		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000498058	ENST00000335712		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000498058	ENST00000477659		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
intron-intron	ENST00000498058	ENST00000358510		ChiTaRS3.1			BI030492	PRKCB	chr16	23895679	-	BCL11A	chr2	60679529	+
3UTR-3CDS	ENST00000481739	ENST00000481739		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000481739	ENST00000356384		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000481739	ENST00000540193		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3CDS	ENST00000356384	ENST00000481739		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000356384	ENST00000356384		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000356384	ENST00000540193		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3CDS	ENST00000540193	ENST00000481739		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000540193	ENST00000356384		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000540193	ENST00000540193		ChiTaRS3.1			AW881282	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
Frame-shit	ENST00000323688	ENST00000323688		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000323688	ENST00000529010		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000323688	ENST00000458064		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
5CDS-intron	ENST00000323688	ENST00000532240		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000529010	ENST00000323688		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000529010	ENST00000529010		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000529010	ENST00000458064		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
5CDS-intron	ENST00000529010	ENST00000532240		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000458064	ENST00000323688		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000458064	ENST00000529010		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
Frame-shit	ENST00000458064	ENST00000458064		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
5CDS-intron	ENST00000458064	ENST00000532240		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
intron-3CDS	ENST00000532240	ENST00000323688		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
intron-3CDS	ENST00000532240	ENST00000529010		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
intron-3CDS	ENST00000532240	ENST00000458064		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
intron-intron	ENST00000532240	ENST00000532240		ChiTaRS3.1			CB853072	NUCB2	chr11	17323325	-	NUCB2	chr11	17332395	+
In-frame	ENST00000541502	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000541502	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000541502	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
Frame-shit	ENST00000541502	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000541502	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000541502	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000409404	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000409404	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000409404	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
Frame-shit	ENST00000409404	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000409404	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000409404	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000298047	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000298047	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000298047	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
Frame-shit	ENST00000298047	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000298047	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000298047	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000525166	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000525166	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
In-frame	ENST00000525166	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
Frame-shit	ENST00000525166	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000525166	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
5CDS-intron	ENST00000525166	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000533797	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000533797	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000533797	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000533797	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-intron	ENST00000533797	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-intron	ENST00000533797	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000489716	ENST00000541502		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000489716	ENST00000409404		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000489716	ENST00000298047		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-3CDS	ENST00000489716	ENST00000525166		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-intron	ENST00000489716	ENST00000533797		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-intron	ENST00000489716	ENST00000489716		ChiTaRS3.1			BF476342	FAT3	chr11	92086282	-	FAT3	chr11	92088272	-
intron-intron	ENST00000373184	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373184	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373187	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000356100	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373190	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373193	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373198	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000373201	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373184		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373187		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000356100		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373190		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373193		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373198		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000373201		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-intron	ENST00000485499	ENST00000485499		ChiTaRS3.1			AA669592	PTPRT	chr20	41076821	+	PTPRT	chr20	41077448	-
intron-3CDS	ENST00000358602	ENST00000358602		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000358602	ENST00000509867		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000358602	ENST00000330838		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-5UTR	ENST00000358602	ENST00000514252		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000509867	ENST00000358602		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000509867	ENST00000509867		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000509867	ENST00000330838		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-5UTR	ENST00000509867	ENST00000514252		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000330838	ENST00000358602		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000330838	ENST00000509867		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000330838	ENST00000330838		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-5UTR	ENST00000330838	ENST00000514252		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000514252	ENST00000358602		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000514252	ENST00000509867		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000514252	ENST00000330838		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-5UTR	ENST00000514252	ENST00000514252		ChiTaRS3.1			BE772112	ANKRD17	chr4	73968123	+	ANKRD17	chr4	73985901	-
intron-3CDS	ENST00000390168	ENST00000307961		ChiTaRS3.1			BC004532	H19	chr11	2018165	+	RPL4	chr15	66795748	-
intron-5UTR	ENST00000390168	ENST00000568588		ChiTaRS3.1			BC004532	H19	chr11	2018165	+	RPL4	chr15	66795748	-
intron-intron	ENST00000390168	ENST00000564517		ChiTaRS3.1			BC004532	H19	chr11	2018165	+	RPL4	chr15	66795748	-
In-frame	ENST00000504986	ENST00000610247		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
In-frame	ENST00000504986	ENST00000452089		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000504986	ENST00000448382		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000504986	ENST00000444073		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000504986	ENST00000609309		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
In-frame	ENST00000513702	ENST00000610247		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
In-frame	ENST00000513702	ENST00000452089		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000513702	ENST00000448382		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000513702	ENST00000444073		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000513702	ENST00000609309		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
In-frame	ENST00000325094	ENST00000610247		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
In-frame	ENST00000325094	ENST00000452089		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000325094	ENST00000448382		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000325094	ENST00000444073		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
5CDS-intron	ENST00000325094	ENST00000609309		ChiTaRS3.1			BF733642	TMEM33	chr4	41941234	-	PILRB	chr7	99956449	-
intron-intron	ENST00000370206	ENST00000370206		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000538964		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000394202		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000545882		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000370206	ENST00000487539		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000370206		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000538964		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000394202		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000545882		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000538964	ENST00000487539		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000370206		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000538964		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000394202		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000545882		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000394202	ENST00000487539		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000370206		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000538964		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000394202		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000545882		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000545882	ENST00000487539		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000370206		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000538964		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000394202		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000545882		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-intron	ENST00000487539	ENST00000487539		ChiTaRS3.1			AA677082	CNN3	chr1	95373277	+	CNN3	chr1	95371888	+
intron-3CDS	ENST00000381441	ENST00000381441		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000381441	ENST00000334635		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381441	ENST00000513800		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381441	ENST00000381437		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381441	ENST00000451288		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000334635	ENST00000381441		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000334635	ENST00000334635		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000334635	ENST00000513800		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000334635	ENST00000381437		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000334635	ENST00000451288		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000513800	ENST00000381441		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000513800	ENST00000334635		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000513800	ENST00000513800		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000513800	ENST00000381437		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000513800	ENST00000451288		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000381437	ENST00000381441		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000381437	ENST00000334635		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381437	ENST00000513800		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381437	ENST00000381437		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000381437	ENST00000451288		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000451288	ENST00000381441		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3CDS	ENST00000451288	ENST00000334635		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000451288	ENST00000513800		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000451288	ENST00000381437		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000451288	ENST00000451288		ChiTaRS3.1			CV341662	DCUN1D4	chr4	52740609	-	DCUN1D4	chr4	52740539	+
intron-3UTR	ENST00000454872	ENST00000261267		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
intron-intron	ENST00000454872	ENST00000549690		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
intron-intron	ENST00000454872	ENST00000548839		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
5CDS-3UTR	ENST00000473253	ENST00000261267		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
5CDS-intron	ENST00000473253	ENST00000549690		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
5CDS-intron	ENST00000473253	ENST00000548839		ChiTaRS3.1			AK126272	NAALADL2	chr3	175299009	+	LYZ	chr12	69747490	+
intron-3CDS	ENST00000217131	ENST00000225964		ChiTaRS3.1			BF432042	CTSZ	chr20	57570716	+	COL1A1	chr17	48275532	+
intron-3CDS	ENST00000342228	ENST00000431532		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000342228	ENST00000370574		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000520262	ENST00000431532		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000520262	ENST00000370574		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000520179	ENST00000431532		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000520179	ENST00000370574		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000523340	ENST00000431532		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
intron-3CDS	ENST00000523340	ENST00000370574		ChiTaRS3.1			BF851482	SLC20A2	chr8	42308736	+	ZNHIT6	chr1	86173833	-
3UTR-3UTR	ENST00000409484	ENST00000409484		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-intron	ENST00000409484	ENST00000468308		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000409484	ENST00000321348		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000409484	ENST00000375252		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
intron-3UTR	ENST00000468308	ENST00000409484		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
intron-intron	ENST00000468308	ENST00000468308		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
intron-3UTR	ENST00000468308	ENST00000321348		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
intron-3UTR	ENST00000468308	ENST00000375252		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000321348	ENST00000409484		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-intron	ENST00000321348	ENST00000468308		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000321348	ENST00000321348		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000321348	ENST00000375252		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000375252	ENST00000409484		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-intron	ENST00000375252	ENST00000468308		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000375252	ENST00000321348		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
3UTR-3UTR	ENST00000375252	ENST00000375252		ChiTaRS3.1			CV572862	CYBRD1	chr2	172411924	-	CYBRD1	chr2	172412029	+
5UTR-intron	ENST00000328195	ENST00000296490		ChiTaRS3.1			AI472022	PROSC	chr8	37620150	-	WDR82	chr3	52311297	+
In-frame	ENST00000319023	ENST00000319023		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000319023	ENST00000539574		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000319023	ENST00000530055		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
5CDS-intron	ENST00000319023	ENST00000526039		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000539574	ENST00000319023		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000539574	ENST00000539574		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000539574	ENST00000530055		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
5CDS-intron	ENST00000539574	ENST00000526039		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000530055	ENST00000319023		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000530055	ENST00000539574		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
In-frame	ENST00000530055	ENST00000530055		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
5CDS-intron	ENST00000530055	ENST00000526039		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
intron-3CDS	ENST00000526039	ENST00000319023		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
intron-3CDS	ENST00000526039	ENST00000539574		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
intron-3CDS	ENST00000526039	ENST00000530055		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
intron-intron	ENST00000526039	ENST00000526039		ChiTaRS3.1			BI906282	NADSYN1	chr11	71209429	-	NADSYN1	chr11	71209486	+
intron-intron	ENST00000390168	ENST00000475381		ChiTaRS3.1			AI110782	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000273512		ChiTaRS3.1			AI110782	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000538775		ChiTaRS3.1			AI110782	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000543711		ChiTaRS3.1			AI110782	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
Frame-shit	ENST00000322038	ENST00000322038		ChiTaRS3.1			BQ214002	TSHZ1	chr18	73000083	-	TSHZ1	chr18	73000128	+
Frame-shit	ENST00000322038	ENST00000580243		ChiTaRS3.1			BQ214002	TSHZ1	chr18	73000083	-	TSHZ1	chr18	73000128	+
Frame-shit	ENST00000580243	ENST00000322038		ChiTaRS3.1			BQ214002	TSHZ1	chr18	73000083	-	TSHZ1	chr18	73000128	+
In-frame	ENST00000580243	ENST00000580243		ChiTaRS3.1			BQ214002	TSHZ1	chr18	73000083	-	TSHZ1	chr18	73000128	+
intron-5UTR	ENST00000286091	ENST00000446136		ChiTaRS3.1			BU536122	PDIA4	chr7	148718189	-	FAM41C	chr1	809700	+
intron-3CDS	ENST00000404234	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000404234	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000404234	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000404234	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000529632	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000529632	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000529632	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000529632	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000360929	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000360929	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000360929	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000360929	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000248933	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000248933	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000248933	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000248933	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000343706	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000343706	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000343706	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000343706	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000402979	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000402979	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000402979	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000402979	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000403121	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000403121	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000403121	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000403121	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000411842	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000411842	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000411842	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000411842	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000494013	ENST00000262043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000494013	ENST00000509330		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000494013	ENST00000393387		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-intron	ENST00000494013	ENST00000420043		ChiTaRS3.1			BF934112	SEZ6L	chr22	26594217	-	PHF3	chr6	64422573	-
intron-3CDS	ENST00000304992	ENST00000304992		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000304992	ENST00000572621		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-intron	ENST00000304992	ENST00000575116		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000572621	ENST00000304992		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000572621	ENST00000572621		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-intron	ENST00000572621	ENST00000575116		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000575116	ENST00000304992		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000575116	ENST00000572621		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-intron	ENST00000575116	ENST00000575116		ChiTaRS3.1			CN414192	PRPF8	chr17	1555030	-	PRPF8	chr17	1558681	-
intron-3CDS	ENST00000264993	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000264993	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000431519	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000508481	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
3UTR-3CDS	ENST00000420115	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000511392	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000419067		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000338791		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000496200		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000354269		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000378717		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000343214		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000348127		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000470772		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000515421	ENST00000480861		ChiTaRS3.1			BG954732	CDV3	chr3	133306634	-	IMPDH1	chr7	128043784	+
intron-3CDS	ENST00000466411	ENST00000478968		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-3CDS	ENST00000466411	ENST00000394783		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-3CDS	ENST00000466411	ENST00000407584		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-3CDS	ENST00000466411	ENST00000266014		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-3CDS	ENST00000466411	ENST00000491606		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-intron	ENST00000466411	ENST00000463827		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000435050	ENST00000478968		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000435050	ENST00000394783		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000435050	ENST00000407584		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000435050	ENST00000266014		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000435050	ENST00000491606		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
5CDS-intron	ENST00000435050	ENST00000463827		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
Frame-shit	ENST00000431918	ENST00000478968		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
Frame-shit	ENST00000431918	ENST00000394783		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
Frame-shit	ENST00000431918	ENST00000407584		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
Frame-shit	ENST00000431918	ENST00000266014		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
Frame-shit	ENST00000431918	ENST00000491606		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
5CDS-intron	ENST00000431918	ENST00000463827		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000340958	ENST00000478968		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000340958	ENST00000394783		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000340958	ENST00000407584		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000340958	ENST00000266014		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
In-frame	ENST00000340958	ENST00000491606		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
5CDS-intron	ENST00000340958	ENST00000463827		ChiTaRS3.1			BF757832	CLDN4	chr7	73245883	+	GLT8D1	chr3	52734352	+
intron-intron	ENST00000341170	ENST00000458244		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000341170	ENST00000293774		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000341170	ENST00000551956		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000354801	ENST00000458244		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000354801	ENST00000293774		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000354801	ENST00000551956		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000484708	ENST00000458244		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000484708	ENST00000293774		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000484708	ENST00000551956		ChiTaRS3.1			DA441162	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-3UTR	ENST00000239231	ENST00000418115		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-3UTR	ENST00000239231	ENST00000454011		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-intron	ENST00000239231	ENST00000422781		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-intron	ENST00000239231	ENST00000265538		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-3UTR	ENST00000520504	ENST00000418115		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-3UTR	ENST00000520504	ENST00000454011		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-intron	ENST00000520504	ENST00000422781		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
intron-intron	ENST00000520504	ENST00000265538		ChiTaRS3.1			BE715872	PANK3	chr5	167976731	-	RHOA	chr3	49397504	+
Frame-shit	ENST00000376929	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000376929	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000376929	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000376929	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
intron-3CDS	ENST00000506690	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
intron-3CDS	ENST00000506690	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
intron-intron	ENST00000506690	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
intron-intron	ENST00000506690	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000389805	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000389805	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000389805	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000389805	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000402874	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000402874	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000402874	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000402874	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000510187	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000510187	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000510187	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000510187	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000360718	ENST00000262189		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
Frame-shit	ENST00000360718	ENST00000355193		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000360718	ENST00000485655		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
5CDS-intron	ENST00000360718	ENST00000485241		ChiTaRS3.1			BG005352	SQSTM1	chr5	179252206	+	KMT2C	chr7	151879316	+
intron-3UTR	ENST00000309964	ENST00000309964		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000309964	ENST00000381322		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000309964	ENST00000513440		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000309964	ENST00000506923		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-3UTR	ENST00000381322	ENST00000309964		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000381322	ENST00000381322		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000381322	ENST00000513440		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000381322	ENST00000506923		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-3UTR	ENST00000513440	ENST00000309964		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000513440	ENST00000381322		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000513440	ENST00000513440		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000513440	ENST00000506923		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-3UTR	ENST00000506923	ENST00000309964		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000506923	ENST00000381322		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000506923	ENST00000513440		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000506923	ENST00000506923		ChiTaRS3.1			BE883242	CLOCK	chr4	56299645	+	CLOCK	chr4	56299610	-
intron-intron	ENST00000377815	ENST00000377767		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000377780		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000545453		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000475871		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000377767		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000377780		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000545453		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000475871		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000377767		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000377780		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000545453		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000475871		ChiTaRS3.1			AW993722	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
Frame-shit	ENST00000374550	ENST00000374550		ChiTaRS3.1			BQ310852	RPL11	chr1	24019146	-	RPL11	chr1	24022354	-
5CDS-3UTR	ENST00000374550	ENST00000482370		ChiTaRS3.1			BQ310852	RPL11	chr1	24019146	-	RPL11	chr1	24022354	-
3UTR-3CDS	ENST00000482370	ENST00000374550		ChiTaRS3.1			BQ310852	RPL11	chr1	24019146	-	RPL11	chr1	24022354	-
3UTR-3UTR	ENST00000482370	ENST00000482370		ChiTaRS3.1			BQ310852	RPL11	chr1	24019146	-	RPL11	chr1	24022354	-
intron-3UTR	ENST00000564878	ENST00000445403		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000373578		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000360723		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000358208		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000373567		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000373558		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000564878	ENST00000477066		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000445403		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000373578		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000360723		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000358208		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000373567		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000373558		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000393062	ENST00000477066		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000445403		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000373578		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000360723		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000358208		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000373567		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000373558		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000378247	ENST00000477066		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000445403		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000373578		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000360723		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000358208		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000373567		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000373558		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
intron-3UTR	ENST00000563972	ENST00000477066		ChiTaRS3.1			BI045492	SPIRE2	chr16	89932815	-	SRC	chr20	36033351	-
3UTR-intron	ENST00000264451	ENST00000495707		ChiTaRS3.1			BI060642	SLC30A9	chr4	42088862	-	XRCC2	chr7	152372503	+
3UTR-intron	ENST00000264451	ENST00000359321		ChiTaRS3.1			BI060642	SLC30A9	chr4	42088862	-	XRCC2	chr7	152372503	+
intron-3UTR	ENST00000380394	ENST00000534336		ChiTaRS3.1			BF814502	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000498815	ENST00000534336		ChiTaRS3.1			BF814502	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000380384	ENST00000534336		ChiTaRS3.1			BF814502	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000315377	ENST00000534336		ChiTaRS3.1			BF814502	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000380381	ENST00000534336		ChiTaRS3.1			BF814502	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-intron	ENST00000421745	ENST00000540582		ChiTaRS3.1			AK128432	BIRC6	chr2	32723809	+	EDEM2	chr20	33865269	-
intron-intron	ENST00000421745	ENST00000374491		ChiTaRS3.1			AK128432	BIRC6	chr2	32723809	+	EDEM2	chr20	33865269	-
intron-intron	ENST00000421745	ENST00000374492		ChiTaRS3.1			AK128432	BIRC6	chr2	32723809	+	EDEM2	chr20	33865269	-
intron-intron	ENST00000421745	ENST00000541621		ChiTaRS3.1			AK128432	BIRC6	chr2	32723809	+	EDEM2	chr20	33865269	-
intron-intron	ENST00000421745	ENST00000542871		ChiTaRS3.1			AK128432	BIRC6	chr2	32723809	+	EDEM2	chr20	33865269	-
intron-intron	ENST00000504107	ENST00000504487		ChiTaRS3.1			AA829672	LINC00992	chr5	116811325	-	CCDC149	chr4	24973882	+
intron-intron	ENST00000504107	ENST00000428116		ChiTaRS3.1			AA829672	LINC00992	chr5	116811325	-	CCDC149	chr4	24973882	+
intron-intron	ENST00000504107	ENST00000389609		ChiTaRS3.1			AA829672	LINC00992	chr5	116811325	-	CCDC149	chr4	24973882	+
intron-intron	ENST00000504107	ENST00000502801		ChiTaRS3.1			AA829672	LINC00992	chr5	116811325	-	CCDC149	chr4	24973882	+
intron-intron	ENST00000504107	ENST00000508236		ChiTaRS3.1			AA829672	LINC00992	chr5	116811325	-	CCDC149	chr4	24973882	+
intron-intron	ENST00000352393	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000352393	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000352393	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000352393	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000352393	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000352393	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317677	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397445	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000317619	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397443	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397446	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000397442	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000453514		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000423041		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000504233		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000428308		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000502269		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
intron-intron	ENST00000475146	ENST00000296783		ChiTaRS3.1			AI537252	CPNE1	chr20	34240010	+	PAPD4	chr5	78965554	-
5UTR-5UTR	ENST00000283365	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000283365	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000283365	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000283365	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000283365	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000283365	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000283365	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000283365	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000283365	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000283365	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000596745	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000596745	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000596745	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000596745	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000596745	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000596745	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000596745	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000596745	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000596745	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000596745	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000315456	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000315456	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000315456	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000315456	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000315456	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000315456	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000315456	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000315456	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000315456	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000315456	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598334	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598334	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598334	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598334	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598334	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598334	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598334	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598334	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598334	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598334	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000554864	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000554864	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000554864	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000554864	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000554864	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000554864	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000554864	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000554864	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000554864	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000554864	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399121	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399121	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399121	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399121	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399121	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399121	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399121	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399121	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399121	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399121	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000595022	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000595022	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000595022	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000595022	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000595022	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000595022	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000595022	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000595022	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000595022	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000595022	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000269190	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000269190	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000269190	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000269190	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000269190	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000269190	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000269190	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000269190	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000269190	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000269190	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399097	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399097	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399097	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399097	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000399097	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399097	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399097	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399097	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399097	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000399097	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598774	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598774	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598774	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598774	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598774	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598774	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598774	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598774	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598774	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598774	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598142	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598142	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598142	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598142	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-5UTR	ENST00000598142	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598142	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598142	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598142	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598142	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
5UTR-intron	ENST00000598142	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000348997	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000348997	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000348997	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000348997	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000348997	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000348997	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000348997	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000348997	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000348997	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000348997	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597599	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597599	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597599	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597599	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597599	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597599	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597599	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597599	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597599	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597599	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269191	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269191	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269191	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269191	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269191	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269191	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269191	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269191	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269191	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269191	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000444659	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000444659	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000444659	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000444659	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000444659	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000444659	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000444659	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000444659	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000444659	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000444659	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000399113	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000399113	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000399113	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000399113	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000399113	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000399113	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000399113	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000399113	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000399113	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000399113	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000601125	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000601125	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000601125	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000601125	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000601125	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000601125	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000601125	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000601125	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000601125	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000601125	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269192	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269192	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269192	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269192	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000269192	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269192	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269192	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269192	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269192	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000269192	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000591182	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000591182	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000591182	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000591182	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000591182	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000591182	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000591182	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000591182	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000591182	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000591182	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597674	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597674	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597674	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597674	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000597674	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597674	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597674	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597674	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597674	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000597674	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000556414	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000556414	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000556414	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000556414	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000556414	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000556414	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000556414	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000556414	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000556414	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000556414	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000599844	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000599844	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000599844	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000599844	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000599844	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000599844	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000599844	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000599844	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000599844	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000599844	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000590831	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000590831	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000590831	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000590831	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000590831	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000590831	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000590831	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000590831	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000590831	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000590831	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000592449	ENST00000266458		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000592449	ENST00000421801		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000592449	ENST00000544284		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000592449	ENST00000545047		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-5UTR	ENST00000592449	ENST00000543602		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000592449	ENST00000545887		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000592449	ENST00000539289		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000592449	ENST00000546017		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000592449	ENST00000535576		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000592449	ENST00000539170		ChiTaRS3.1			DA275662	DTNA	chr18	32259553	+	GABARAPL1	chr12	10365475	+
intron-intron	ENST00000267812	ENST00000267812		ChiTaRS3.1			BE073952	MFAP1	chr15	44098736	+	MFAP1	chr15	44098778	-
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			CV572932	BCAS3	chr17	59378187	+	BCAS3	chr17	59371368	+
intron-3UTR	ENST00000366661	ENST00000377560		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000366661	ENST00000430131		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000366661	ENST00000550722		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-intron	ENST00000366661	ENST00000549141		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000366662	ENST00000377560		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000366662	ENST00000430131		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000366662	ENST00000550722		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-intron	ENST00000366662	ENST00000549141		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000414259	ENST00000377560		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000414259	ENST00000430131		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-3UTR	ENST00000414259	ENST00000550722		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-intron	ENST00000414259	ENST00000549141		ChiTaRS3.1			BG911412	TTC13	chr1	231088042	-	HECTD4	chr12	112600152	-
intron-intron	ENST00000301178	ENST00000287218		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000301178	ENST00000373391		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000301178	ENST00000463847		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000359092	ENST00000287218		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000359092	ENST00000373391		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000359092	ENST00000463847		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000594880	ENST00000287218		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000594880	ENST00000373391		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000594880	ENST00000463847		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000593513	ENST00000287218		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000593513	ENST00000373391		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000593513	ENST00000463847		ChiTaRS3.1			CV346482	AXL	chr19	41753915	-	ZFAND3	chr6	37941858	-
intron-intron	ENST00000595437	ENST00000595437		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000595437	ENST00000376586		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000595437	ENST00000319562		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000595437	ENST00000376581		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000595437	ENST00000593990		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376586	ENST00000595437		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376586	ENST00000376586		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376586	ENST00000319562		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376586	ENST00000376581		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376586	ENST00000593990		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000319562	ENST00000595437		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000319562	ENST00000376586		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000319562	ENST00000319562		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000319562	ENST00000376581		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000319562	ENST00000593990		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376581	ENST00000595437		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376581	ENST00000376586		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376581	ENST00000319562		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376581	ENST00000376581		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000376581	ENST00000593990		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000593990	ENST00000595437		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000593990	ENST00000376586		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000593990	ENST00000319562		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000593990	ENST00000376581		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000593990	ENST00000593990		ChiTaRS3.1			BF769422	FARP1	chr13	98890997	-	FARP1	chr13	98943209	-
intron-intron	ENST00000368485	ENST00000313070		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000368485	ENST00000334010		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000368485	ENST00000412584		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000368485	ENST00000449022		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000368485	ENST00000476131		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000344086	ENST00000313070		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000344086	ENST00000334010		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000344086	ENST00000412584		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000344086	ENST00000449022		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000344086	ENST00000476131		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000507256	ENST00000313070		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000507256	ENST00000334010		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000507256	ENST00000412584		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000507256	ENST00000449022		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
intron-intron	ENST00000507256	ENST00000476131		ChiTaRS3.1			BE072332	IL6R	chr1	154398376	+	CADPS2	chr7	122188225	+
Frame-shit	ENST00000531120	ENST00000531120		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
Frame-shit	ENST00000531120	ENST00000524896		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
5CDS-intron	ENST00000531120	ENST00000532054		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
Frame-shit	ENST00000524896	ENST00000531120		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
Frame-shit	ENST00000524896	ENST00000524896		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
5CDS-intron	ENST00000524896	ENST00000532054		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
intron-3CDS	ENST00000532054	ENST00000531120		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
intron-3CDS	ENST00000532054	ENST00000524896		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
intron-intron	ENST00000532054	ENST00000532054		ChiTaRS3.1			CA312302	EIF3M	chr11	32623319	-	EIF3M	chr11	32617512	+
3UTR-3CDS	ENST00000534336	ENST00000380394		ChiTaRS3.1			BF814212	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-intron	ENST00000534336	ENST00000498815		ChiTaRS3.1			BF814212	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000380384		ChiTaRS3.1			BF814212	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000315377		ChiTaRS3.1			BF814212	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000380381		ChiTaRS3.1			BF814212	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
intron-intron	ENST00000335508	ENST00000335508		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000335508	ENST00000462613		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000335508	ENST00000409915		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000335508	ENST00000414963		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000335508	ENST00000487698		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000462613	ENST00000335508		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000462613	ENST00000462613		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000462613	ENST00000409915		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000462613	ENST00000414963		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000462613	ENST00000487698		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000409915	ENST00000335508		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000409915	ENST00000462613		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000409915	ENST00000409915		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000409915	ENST00000414963		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000409915	ENST00000487698		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000414963	ENST00000335508		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000414963	ENST00000462613		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000414963	ENST00000409915		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000414963	ENST00000414963		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000414963	ENST00000487698		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000487698	ENST00000335508		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000487698	ENST00000462613		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000487698	ENST00000409915		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000487698	ENST00000414963		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
intron-intron	ENST00000487698	ENST00000487698		ChiTaRS3.1			AW015852	SF3B1	chr2	198259365	+	SF3B1	chr2	198258510	+
3UTR-3UTR	ENST00000249356	ENST00000249356		ChiTaRS3.1			AI654302	DNAJB9	chr7	108214746	-	DNAJB9	chr7	108214694	+
3UTR-intron	ENST00000249356	ENST00000465725		ChiTaRS3.1			AI654302	DNAJB9	chr7	108214746	-	DNAJB9	chr7	108214694	+
intron-3UTR	ENST00000465725	ENST00000249356		ChiTaRS3.1			AI654302	DNAJB9	chr7	108214746	-	DNAJB9	chr7	108214694	+
intron-intron	ENST00000465725	ENST00000465725		ChiTaRS3.1			AI654302	DNAJB9	chr7	108214746	-	DNAJB9	chr7	108214694	+
Frame-shit	ENST00000306010	ENST00000306010		ChiTaRS3.1			BG163522	MGMT	chr10	131557541	-	MGMT	chr10	131565108	+
5CDS-intron	ENST00000306010	ENST00000462672		ChiTaRS3.1			BG163522	MGMT	chr10	131557541	-	MGMT	chr10	131565108	+
intron-3CDS	ENST00000462672	ENST00000306010		ChiTaRS3.1			BG163522	MGMT	chr10	131557541	-	MGMT	chr10	131565108	+
intron-intron	ENST00000462672	ENST00000462672		ChiTaRS3.1			BG163522	MGMT	chr10	131557541	-	MGMT	chr10	131565108	+
intron-5UTR	ENST00000378641	ENST00000553612		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-intron	ENST00000378641	ENST00000434192		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-5UTR	ENST00000338037	ENST00000553612		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-intron	ENST00000338037	ENST00000434192		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-5UTR	ENST00000378637	ENST00000553612		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-intron	ENST00000378637	ENST00000434192		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-5UTR	ENST00000494924	ENST00000553612		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-intron	ENST00000494924	ENST00000434192		ChiTaRS3.1			BE835662	PLCB1	chr20	8188789	-	GTF2A1	chr14	81686939	+
intron-intron	ENST00000333206	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000333206	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000333206	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000333206	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000420878	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000420878	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000420878	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000420878	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000589178	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000589178	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000589178	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000589178	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000383091	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000383091	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000383091	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000383091	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000601405	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000601405	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000601405	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000601405	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000592278	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000592278	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000592278	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000592278	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000588832	ENST00000586725		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000588832	ENST00000269195		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000588832	ENST00000591081		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
5UTR-intron	ENST00000588832	ENST00000537549		ChiTaRS3.1			DA662182	ZSCAN30	chr18	32870095	-	GALNT1	chr18	33263353	+
intron-intron	ENST00000348520	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000348520	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000348520	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000348520	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000348520	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000380038	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000380038	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000380038	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000380038	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000380038	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000389744	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000389744	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000389744	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000389744	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000389744	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557575	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557575	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557575	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557575	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557575	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000553286	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000553286	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000553286	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000553286	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000553286	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000347839	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000347839	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000347839	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000347839	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000347839	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000555836	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000555836	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000555836	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000555836	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000555836	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000334553	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000334553	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000334553	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000334553	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000334553	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000246489	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000246489	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000246489	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000246489	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000246489	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557450	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557450	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557450	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557450	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000557450	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000554280	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000554280	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000554280	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000554280	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000554280	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000452929	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000452929	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000452929	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000452929	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000452929	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000445352	ENST00000396231		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000445352	ENST00000262726		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000445352	ENST00000358439		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000445352	ENST00000356087		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000445352	ENST00000461800		ChiTaRS3.1			BI005102	KLC1	chr14	104130150	-	EFCAB6	chr22	44151616	-
intron-intron	ENST00000468480	ENST00000468480		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000468480	ENST00000346166		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000468480	ENST00000381588		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000468480	ENST00000381570		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000468480	ENST00000399762		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000346166	ENST00000468480		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000346166	ENST00000346166		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000346166	ENST00000381588		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000346166	ENST00000381570		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000346166	ENST00000399762		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381588	ENST00000468480		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381588	ENST00000346166		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381588	ENST00000381588		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381588	ENST00000381570		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381588	ENST00000399762		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381570	ENST00000468480		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381570	ENST00000346166		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381570	ENST00000381588		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381570	ENST00000381570		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000381570	ENST00000399762		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000399762	ENST00000468480		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000399762	ENST00000346166		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000399762	ENST00000381588		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000399762	ENST00000381570		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000399762	ENST00000399762		ChiTaRS3.1			BI822902	RNF6	chr13	26788481	+	RNF6	chr13	26788449	-
intron-intron	ENST00000400900	ENST00000400900		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000400900	ENST00000470413		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000400900	ENST00000465026		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000470413	ENST00000400900		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000470413	ENST00000470413		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000470413	ENST00000465026		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000465026	ENST00000400900		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000465026	ENST00000470413		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000465026	ENST00000465026		ChiTaRS3.1			AW861592	APITD1-CORT	chr1	10505186	+	APITD1-CORT	chr1	10504419	+
intron-intron	ENST00000538486	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000538486	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000538486	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000538486	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000397323	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000397323	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000397323	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000397323	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000320203	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000320203	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000320203	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000320203	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000287771	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000287771	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000287771	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000287771	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000339877	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000339877	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000339877	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000339877	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000517860	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000517860	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000517860	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000517860	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520161	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520161	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520161	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520161	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000519647	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000519647	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000519647	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000519647	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520191	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520191	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520191	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520191	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520916	ENST00000267229		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520916	ENST00000438737		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520916	ENST00000438724		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000520916	ENST00000461008		ChiTaRS3.1			BF988612	RBPMS	chr8	30408153	-	RBM26	chr13	79929068	-
intron-intron	ENST00000476901	ENST00000287437		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000476901	ENST00000522563		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000476901	ENST00000517315		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000476901	ENST00000521460		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
5UTR-intron	ENST00000290846	ENST00000287437		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
5UTR-intron	ENST00000290846	ENST00000522563		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
5UTR-intron	ENST00000290846	ENST00000517315		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
5UTR-intron	ENST00000290846	ENST00000521460		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000381019	ENST00000287437		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000381019	ENST00000522563		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000381019	ENST00000517315		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000381019	ENST00000521460		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000424260	ENST00000287437		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000424260	ENST00000522563		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000424260	ENST00000517315		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-intron	ENST00000424260	ENST00000521460		ChiTaRS3.1			AA862462	TRMU	chr22	46731485	+	NSMCE2	chr8	126163518	-
intron-3UTR	ENST00000230640	ENST00000230640		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000230640	ENST00000545714		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000230640	ENST00000504388		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-3UTR	ENST00000545714	ENST00000230640		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000545714	ENST00000545714		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000545714	ENST00000504388		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-3UTR	ENST00000504388	ENST00000230640		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000504388	ENST00000545714		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-intron	ENST00000504388	ENST00000504388		ChiTaRS3.1			BE768762	SKIV2L2	chr5	54721708	+	SKIV2L2	chr5	54721044	-
intron-3CDS	ENST00000262384	ENST00000262384		ChiTaRS3.1			AW014162	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000262384	ENST00000565423		ChiTaRS3.1			AW014162	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-3CDS	ENST00000565423	ENST00000262384		ChiTaRS3.1			AW014162	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
intron-intron	ENST00000565423	ENST00000565423		ChiTaRS3.1			AW014162	N4BP1	chr16	48595261	-	N4BP1	chr16	48595799	-
5CDS-3UTR	ENST00000331803	ENST00000394048		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000331803	ENST00000267113		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000331803	ENST00000541590		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-intron	ENST00000331803	ENST00000550878		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000341253	ENST00000394048		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000341253	ENST00000267113		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000341253	ENST00000541590		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-intron	ENST00000341253	ENST00000550878		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000395564	ENST00000394048		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000395564	ENST00000267113		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000395564	ENST00000541590		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-intron	ENST00000395564	ENST00000550878		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
3UTR-3UTR	ENST00000482015	ENST00000394048		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
3UTR-3UTR	ENST00000482015	ENST00000267113		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
3UTR-3UTR	ENST00000482015	ENST00000541590		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
3UTR-intron	ENST00000482015	ENST00000550878		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000429491	ENST00000394048		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000429491	ENST00000267113		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-3UTR	ENST00000429491	ENST00000541590		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
5CDS-intron	ENST00000429491	ENST00000550878		ChiTaRS3.1			BF808072	UPP1	chr7	48146496	-	ESYT1	chr12	56537665	+
In-frame	ENST00000167462	ENST00000262887		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
In-frame	ENST00000167462	ENST00000543982		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
intron-3CDS	ENST00000375227	ENST00000262887		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
intron-3CDS	ENST00000375227	ENST00000543982		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
In-frame	ENST00000392550	ENST00000262887		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
In-frame	ENST00000392550	ENST00000543982		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
intron-3CDS	ENST00000578363	ENST00000262887		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
intron-3CDS	ENST00000578363	ENST00000543982		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
In-frame	ENST00000577200	ENST00000262887		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
In-frame	ENST00000577200	ENST00000543982		ChiTaRS3.1			BG979482	LLGL2	chr17	73565165	+	XRCC1	chr19	44057048	-
3UTR-3UTR	ENST00000343242	ENST00000343242		ChiTaRS3.1			CB055092	MAFK	chr7	1582337	+	MAFK	chr7	1581666	+
In-frame	ENST00000255759	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000255759	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000255759	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573968	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573968	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573968	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573396	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573396	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573396	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3CDS	ENST00000575744	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3CDS	ENST00000575744	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
intron-3UTR	ENST00000575744	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000575073	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000575073	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000575073	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573429	ENST00000262461		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
In-frame	ENST00000573429	ENST00000343225		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
5CDS-3UTR	ENST00000573429	ENST00000507791		ChiTaRS3.1			BC107872	FOPNL	chr16	15977865	-	SLC12A2	chr5	127514257	+
3UTR-3UTR	ENST00000329841	ENST00000329841		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-3UTR	ENST00000329841	ENST00000346623		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-intron	ENST00000329841	ENST00000557963		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-intron	ENST00000329841	ENST00000560555		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-3UTR	ENST00000346623	ENST00000329841		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-3UTR	ENST00000346623	ENST00000346623		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-intron	ENST00000346623	ENST00000557963		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
3UTR-intron	ENST00000346623	ENST00000560555		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-3UTR	ENST00000557963	ENST00000329841		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-3UTR	ENST00000557963	ENST00000346623		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-intron	ENST00000557963	ENST00000557963		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-intron	ENST00000557963	ENST00000560555		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-3UTR	ENST00000560555	ENST00000329841		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-3UTR	ENST00000560555	ENST00000346623		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-intron	ENST00000560555	ENST00000557963		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-intron	ENST00000560555	ENST00000560555		ChiTaRS3.1			BU675142	ALDH1A3	chr15	101456519	-	ALDH1A3	chr15	101456364	+
intron-3CDS	ENST00000545664	ENST00000545664		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000545664	ENST00000269740		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000545664	ENST00000455372		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000545664	ENST00000590875		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000269740	ENST00000545664		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000269740	ENST00000269740		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000269740	ENST00000455372		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000269740	ENST00000590875		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000455372	ENST00000545664		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000455372	ENST00000269740		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000455372	ENST00000455372		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000455372	ENST00000590875		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000590875	ENST00000545664		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000590875	ENST00000269740		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000590875	ENST00000455372		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-intron	ENST00000590875	ENST00000590875		ChiTaRS3.1			BF766582	SLC39A3	chr19	2737288	+	SLC39A3	chr19	2733340	+
intron-3CDS	ENST00000525739	ENST00000474362		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000374721		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000489388		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000374726		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000429130		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000469949		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000460270		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000354759		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000489321		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000395895		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000374728		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000345491		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000333809		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000439705		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000337656		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000374734		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000479070		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000348787		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000361599		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000484283		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000395887		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000463314		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000342105		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000463960		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000487763		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000473940		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000488328		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000356917		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000488741		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000474931		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000525739	ENST00000468236		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000344351		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-3UTR	ENST00000525739	ENST00000490511		ChiTaRS3.1			CV379432	WTAPP1	chr11	102662389	-	CREM	chr10	35500631	+
intron-intron	ENST00000502732	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000502732	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000367623	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000507173	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000511413	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000392043	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000408940	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000344730	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000512653	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000502732		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000367623		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000507173		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000511413		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000392043		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000408940		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000344730		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000512653		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-intron	ENST00000504405	ENST00000504405		ChiTaRS3.1			AL120022	ABL2	chr1	179171335	+	ABL2	chr1	179171296	-
intron-3UTR	ENST00000505747	ENST00000505747		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000505747	ENST00000260619		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000505747	ENST00000454352		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000505747	ENST00000403537		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-3UTR	ENST00000260619	ENST00000505747		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000260619	ENST00000260619		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000260619	ENST00000454352		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000260619	ENST00000403537		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-3UTR	ENST00000454352	ENST00000505747		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000454352	ENST00000260619		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000454352	ENST00000454352		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000454352	ENST00000403537		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-3UTR	ENST00000403537	ENST00000505747		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000403537	ENST00000260619		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000403537	ENST00000454352		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
intron-intron	ENST00000403537	ENST00000403537		ChiTaRS3.1			BU689932	THUMPD2	chr2	39963726	+	THUMPD2	chr2	39963779	-
3UTR-intron	ENST00000534336	ENST00000392505		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000359685		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000357080		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000409045		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-3UTR	ENST00000534336	ENST00000190611		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000409631		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000315022		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
3UTR-intron	ENST00000534336	ENST00000477097		ChiTaRS3.1			AA322902	MALAT1	chr11	65268091	+	OSBPL6	chr2	179261323	+
intron-3UTR	ENST00000357037	ENST00000357037		ChiTaRS3.1			CF126982	PTRF	chr17	40555352	+	PTRF	chr17	40555241	-
intron-3CDS	ENST00000541110	ENST00000333891		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000541110	ENST00000423517		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000541110	ENST00000437081		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000541110	ENST00000426442		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000372917	ENST00000333891		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000372917	ENST00000423517		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000372917	ENST00000437081		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000372917	ENST00000426442		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000372922	ENST00000333891		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000372922	ENST00000423517		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000372922	ENST00000437081		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000372922	ENST00000426442		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000340840	ENST00000333891		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000340840	ENST00000423517		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000340840	ENST00000437081		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000340840	ENST00000426442		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000354325	ENST00000333891		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-3CDS	ENST00000354325	ENST00000423517		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000354325	ENST00000437081		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-intron	ENST00000354325	ENST00000426442		ChiTaRS3.1			BF376482	TRERF1	chr6	42393877	-	PCLO	chr7	82595410	+
intron-5UTR	ENST00000373233	ENST00000373233		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000373233	ENST00000309279		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000373233	ENST00000373222		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000373233	ENST00000480022		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000309279	ENST00000373233		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000309279	ENST00000309279		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000309279	ENST00000373222		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000309279	ENST00000480022		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000373222	ENST00000373233		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000373222	ENST00000309279		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000373222	ENST00000373222		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000373222	ENST00000480022		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000480022	ENST00000373233		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-5UTR	ENST00000480022	ENST00000309279		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000480022	ENST00000373222		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-intron	ENST00000480022	ENST00000480022		ChiTaRS3.1			AK026022	CHD6	chr20	40050694	-	CHD6	chr20	40247063	-
intron-3CDS	ENST00000444376	ENST00000444376		ChiTaRS3.1			BE703732	HNRNPU	chr1	245023688	+	HNRNPU	chr1	245019358	+
intron-3CDS	ENST00000444376	ENST00000283179		ChiTaRS3.1			BE703732	HNRNPU	chr1	245023688	+	HNRNPU	chr1	245019358	+
intron-3CDS	ENST00000283179	ENST00000444376		ChiTaRS3.1			BE703732	HNRNPU	chr1	245023688	+	HNRNPU	chr1	245019358	+
intron-3CDS	ENST00000283179	ENST00000283179		ChiTaRS3.1			BE703732	HNRNPU	chr1	245023688	+	HNRNPU	chr1	245019358	+
intron-intron	ENST00000451020	ENST00000378863		ChiTaRS3.1			CB163082	ABCA11P	chr4	431791	+	CRLS1	chr20	5989691	-
intron-intron	ENST00000451020	ENST00000452938		ChiTaRS3.1			CB163082	ABCA11P	chr4	431791	+	CRLS1	chr20	5989691	-
intron-intron	ENST00000451020	ENST00000378868		ChiTaRS3.1			CB163082	ABCA11P	chr4	431791	+	CRLS1	chr20	5989691	-
intron-intron	ENST00000451020	ENST00000464921		ChiTaRS3.1			CB163082	ABCA11P	chr4	431791	+	CRLS1	chr20	5989691	-
intron-3CDS	ENST00000513454	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000513454	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000311337	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000458112	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000500692	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000508177	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000503794	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000513454		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000311337		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000458112		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000500692		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000508177		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000503794		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-3CDS	ENST00000542860	ENST00000542860		ChiTaRS3.1			BU618872	GNPDA1	chr5	141382699	+	GNPDA1	chr5	141382729	-
intron-intron	ENST00000361379	ENST00000361379		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000361379	ENST00000336092		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000361379	ENST00000555948		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000361379	ENST00000367312		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000336092	ENST00000361379		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000336092	ENST00000336092		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000336092	ENST00000555948		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000336092	ENST00000367312		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000555948	ENST00000361379		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000555948	ENST00000336092		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000555948	ENST00000555948		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000555948	ENST00000367312		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000367312	ENST00000361379		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000367312	ENST00000336092		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000367312	ENST00000555948		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-intron	ENST00000367312	ENST00000367312		ChiTaRS3.1			BF088112	TNNI1	chr1	201384325	-	TNNI1	chr1	201384411	+
intron-3CDS	ENST00000375820	ENST00000375820		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-intron	ENST00000375820	ENST00000543140		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-5UTR	ENST00000375820	ENST00000467182		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-3CDS	ENST00000543140	ENST00000375820		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-intron	ENST00000543140	ENST00000543140		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-5UTR	ENST00000543140	ENST00000467182		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-3CDS	ENST00000467182	ENST00000375820		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-intron	ENST00000467182	ENST00000543140		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-5UTR	ENST00000467182	ENST00000467182		ChiTaRS3.1			BP422422	COL4A1	chr13	110802192	+	COL4A1	chr13	110814754	-
intron-intron	ENST00000512097	ENST00000512097		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000512097	ENST00000264773		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000512097	ENST00000507750		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000512097	ENST00000503706		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000264773	ENST00000512097		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000264773	ENST00000264773		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000264773	ENST00000507750		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000264773	ENST00000503706		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000507750	ENST00000512097		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000507750	ENST00000264773		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000507750	ENST00000507750		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000507750	ENST00000503706		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000503706	ENST00000512097		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000503706	ENST00000264773		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000503706	ENST00000507750		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000503706	ENST00000503706		ChiTaRS3.1			AB076972	KCNN2	chr5	113740021	-	KCNN2	chr5	113740107	+
intron-intron	ENST00000597652	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597652	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597652	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597652	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597652	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000596604	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000596604	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000596604	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000596604	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000596604	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597342	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597342	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597342	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597342	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597342	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597832	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597832	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597832	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597832	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597832	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000595295	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000595295	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000595295	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000595295	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000595295	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000600634	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000600634	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000600634	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000600634	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000600634	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000435989	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000435989	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000435989	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000435989	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000435989	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597807	ENST00000536656		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597807	ENST00000377346		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597807	ENST00000484851		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597807	ENST00000361110		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
intron-intron	ENST00000597807	ENST00000543390		ChiTaRS3.1			BF926362	ZNF814	chr19	58383067	+	PIK3CD	chr1	9772324	-
Frame-shit	ENST00000320394	ENST00000320394		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000320394	ENST00000564186		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000320394	ENST00000541926		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-5UTR	ENST00000320394	ENST00000433597		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-intron	ENST00000320394	ENST00000562762		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000564186	ENST00000320394		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000564186	ENST00000564186		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000564186	ENST00000541926		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-5UTR	ENST00000564186	ENST00000433597		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-intron	ENST00000564186	ENST00000562762		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000541926	ENST00000320394		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000541926	ENST00000564186		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
Frame-shit	ENST00000541926	ENST00000541926		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-5UTR	ENST00000541926	ENST00000433597		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
5CDS-intron	ENST00000541926	ENST00000562762		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000433597	ENST00000320394		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000433597	ENST00000564186		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000433597	ENST00000541926		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-5UTR	ENST00000433597	ENST00000433597		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-intron	ENST00000433597	ENST00000562762		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000562762	ENST00000320394		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000562762	ENST00000564186		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000562762	ENST00000541926		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-5UTR	ENST00000562762	ENST00000433597		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-intron	ENST00000562762	ENST00000562762		ChiTaRS3.1			BI520472	IQCK	chr16	19729630	-	IQCK	chr16	19745024	+
intron-3CDS	ENST00000561603	ENST00000442598		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3CDS	ENST00000561603	ENST00000371975		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-intron	ENST00000561603	ENST00000473251		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3CDS	ENST00000304330	ENST00000442598		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3CDS	ENST00000304330	ENST00000371975		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-intron	ENST00000304330	ENST00000473251		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3CDS	ENST00000568413	ENST00000442598		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3CDS	ENST00000568413	ENST00000371975		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-intron	ENST00000568413	ENST00000473251		ChiTaRS3.1			AI335862	RPAP1	chr15	41815069	-	RAD54L	chr1	46743873	-
intron-3UTR	ENST00000373823	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373823	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373823	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373823	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373823	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000373808	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373808	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373808	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373808	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373808	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000436847	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000436847	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000436847	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000436847	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000436847	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000449733	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000449733	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000449733	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000449733	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000449733	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000412819	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000412819	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000412819	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000412819	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000412819	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000394353	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000394353	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000394353	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000394353	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000394353	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000341272	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000341272	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000341272	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000341272	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000341272	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000545652	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000545652	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000545652	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000545652	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000545652	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000373818	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373818	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373818	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373818	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373818	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000485767	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000485767	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000485767	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000485767	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000485767	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000373807	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373807	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373807	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373807	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373807	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3UTR	ENST00000373806	ENST00000261304		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373806	ENST00000544807		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373806	ENST00000393569		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373806	ENST00000393568		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-intron	ENST00000373806	ENST00000554916		ChiTaRS3.1			BQ292312	GSN	chr9	124053530	+	GALC	chr14	88400470	+
intron-3CDS	ENST00000586218	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586218	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000593256	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000447337	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000354882	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586590	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000586956	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000589555	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000587948	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000586218		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000593256		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000447337		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000354882		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000586590		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000586956		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000589555		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000587948		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-3CDS	ENST00000588560	ENST00000588560		ChiTaRS3.1			AW276772	TMEM205	chr19	11456118	+	TMEM205	chr19	11453683	-
intron-5UTR	ENST00000378004	ENST00000359370		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000378004	ENST00000378046		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000378004	ENST00000337706		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000378004	ENST00000360966		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000378004	ENST00000407758		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000378004	ENST00000419524		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-intron	ENST00000378004	ENST00000494579		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000359370		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000378046		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000337706		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000360966		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000407758		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000274498	ENST00000419524		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-intron	ENST00000274498	ENST00000494579		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000359370		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000378046		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000337706		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000360966		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000407758		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-5UTR	ENST00000486650	ENST00000419524		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-intron	ENST00000486650	ENST00000494579		ChiTaRS3.1			DA127072	ARHGAP26	chr5	142150940	+	FGF1	chr5	141993728	-
intron-intron	ENST00000524717	ENST00000534358		ChiTaRS3.1			DQ084492	MAML2	chr11	95819954	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000524717	ENST00000389506		ChiTaRS3.1			DQ084492	MAML2	chr11	95819954	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000524717	ENST00000354520		ChiTaRS3.1			DQ084492	MAML2	chr11	95819954	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000524717	ENST00000420751		ChiTaRS3.1			DQ084492	MAML2	chr11	95819954	-	KMT2A	chr11	118359129	+
5CDS-5UTR	ENST00000357276	ENST00000382582		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000355994		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397875		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397866		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397865		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000527041		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-intron	ENST00000357276	ENST00000359645		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000528160		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397869		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000354542		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000526111		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000580402		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000579129		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000578193		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397863		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000397860		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000357276	ENST00000487778		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000382582		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000355994		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397875		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397866		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397865		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000527041		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-intron	ENST00000358207	ENST00000359645		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000528160		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397869		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000354542		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000526111		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000580402		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000579129		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000578193		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397863		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000397860		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
5CDS-5UTR	ENST00000358207	ENST00000487778		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000382582		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000355994		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397875		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397866		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397865		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000527041		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-intron	ENST00000479008	ENST00000359645		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000528160		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397869		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000354542		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000526111		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000580402		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000579129		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000578193		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397863		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000397860		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000479008	ENST00000487778		ChiTaRS3.1			DA130152	SMARCAL1	chr2	217297508	+	MBP	chr18	74729011	-
intron-3UTR	ENST00000332149	ENST00000534336		ChiTaRS3.1			BE974112	TMPRSS2	chr21	42876327	-	MALAT1	chr11	65266549	+
intron-3UTR	ENST00000398585	ENST00000534336		ChiTaRS3.1			BE974112	TMPRSS2	chr21	42876327	-	MALAT1	chr11	65266549	+
intron-3UTR	ENST00000458356	ENST00000534336		ChiTaRS3.1			BE974112	TMPRSS2	chr21	42876327	-	MALAT1	chr11	65266549	+
intron-3UTR	ENST00000497881	ENST00000534336		ChiTaRS3.1			BE974112	TMPRSS2	chr21	42876327	-	MALAT1	chr11	65266549	+
intron-3UTR	ENST00000233838	ENST00000316059		ChiTaRS3.1			BQ355482	GGCX	chr2	85778430	+	ZFP91	chr11	58387580	+
intron-3UTR	ENST00000430215	ENST00000316059		ChiTaRS3.1			BQ355482	GGCX	chr2	85778430	+	ZFP91	chr11	58387580	+
intron-3UTR	ENST00000473665	ENST00000316059		ChiTaRS3.1			BQ355482	GGCX	chr2	85778430	+	ZFP91	chr11	58387580	+
intron-intron	ENST00000438793	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000438793	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000438793	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000438793	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000438793	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000438793	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000346918	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000379787	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000348126	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000304400	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000274392	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000455264	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000204726		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000450791		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000456883		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000537452		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000545875		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-intron	ENST00000513648	ENST00000534967		ChiTaRS3.1			BG949772	PAM	chr5	102339713	-	GOLGA3	chr12	133393131	+
intron-3UTR	ENST00000397887	ENST00000397887		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000397887	ENST00000330938		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397887	ENST00000445724		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397887	ENST00000397886		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397887	ENST00000494690		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000330938	ENST00000397887		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000330938	ENST00000330938		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000330938	ENST00000445724		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000330938	ENST00000397886		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000330938	ENST00000494690		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000445724	ENST00000397887		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000445724	ENST00000330938		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000445724	ENST00000445724		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000445724	ENST00000397886		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000445724	ENST00000494690		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000397886	ENST00000397887		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000397886	ENST00000330938		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397886	ENST00000445724		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397886	ENST00000397886		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000397886	ENST00000494690		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000494690	ENST00000397887		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3UTR	ENST00000494690	ENST00000330938		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000494690	ENST00000445724		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000494690	ENST00000397886		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-intron	ENST00000494690	ENST00000494690		ChiTaRS3.1			BU677262	PTTG1IP	chr21	46270032	+	PTTG1IP	chr21	46270241	-
intron-3CDS	ENST00000398226	ENST00000225992		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000398226	ENST00000591228		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000398226	ENST00000587006		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000537379	ENST00000225992		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000537379	ENST00000591228		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000537379	ENST00000587006		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000531964	ENST00000225992		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000531964	ENST00000591228		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000531964	ENST00000587006		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000526049	ENST00000225992		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000526049	ENST00000591228		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000526049	ENST00000587006		ChiTaRS3.1			BP384162	VIMP	chr15	101817643	+	PPY	chr17	42019016	-
intron-3CDS	ENST00000218758	ENST00000394936		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000218758	ENST00000394934		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000412435	ENST00000394936		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000412435	ENST00000394934		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000592828	ENST00000394936		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000592828	ENST00000394934		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000433365	ENST00000394936		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000433365	ENST00000394934		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000590420	ENST00000394936		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000590420	ENST00000394934		ChiTaRS3.1			AW608472	ACP5	chr19	11688133	+	PSAP	chr10	73587814	+
intron-3CDS	ENST00000458477	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000458477	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000458477	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000458477	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000458477	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000228307	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000228307	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000228307	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000228307	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000228307	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000424649	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000424649	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000424649	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000424649	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000424649	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000397506	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000397506	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000397506	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000397506	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000397506	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000536957	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000536957	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000536957	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000536957	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000536957	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000267257	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000267257	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000267257	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000267257	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000267257	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000538144	ENST00000439590		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000538144	ENST00000311111		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000538144	ENST00000584577		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000538144	ENST00000534490		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-3CDS	ENST00000538144	ENST00000533498		ChiTaRS3.1			AA034452	PXN	chr12	120655460	+	RPL38	chr17	72205394	+
intron-5UTR	ENST00000518164	ENST00000354219		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000518164	ENST00000256585		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000518164	ENST00000530654		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000518164	ENST00000369401		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000521291	ENST00000354219		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000521291	ENST00000256585		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000521291	ENST00000530654		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000521291	ENST00000369401		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000396070	ENST00000354219		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000396070	ENST00000256585		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000396070	ENST00000530654		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000396070	ENST00000369401		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000287038	ENST00000354219		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000287038	ENST00000256585		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000287038	ENST00000530654		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000287038	ENST00000369401		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000523172	ENST00000354219		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000523172	ENST00000256585		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000523172	ENST00000530654		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-5UTR	ENST00000523172	ENST00000369401		ChiTaRS3.1			AA315842	RPL30	chr8	99054887	+	REG4	chr1	120354068	-
intron-intron	ENST00000255409	ENST00000368378		ChiTaRS3.1			BF912932	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000541576		ChiTaRS3.1			BF912932	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000457183		ChiTaRS3.1			BF912932	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000541990		ChiTaRS3.1			BF912932	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000486260		ChiTaRS3.1			BF912932	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
5UTR-3UTR	ENST00000338252	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000338252	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000338252	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508830	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508830	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000359176	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000359176	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395812	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395812	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000325674	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000325674	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000395813	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000395813	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000510756	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000510756	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000508608	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-intron	ENST00000508608	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000341926	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000341926	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511049	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511049	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000309190	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000309190	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000509903	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000509903	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000511782	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000511782	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-3UTR	ENST00000504465	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5UTR-intron	ENST00000504465	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000348386	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000348386	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000508579	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000508579	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000338252		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000508830		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000359176		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000395812		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000325674		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000395813		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000510756		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000508608		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000341926		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000511049		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-3UTR	ENST00000515663	ENST00000309190		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000509903		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000511782		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000504465		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000348386		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000508579		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
intron-intron	ENST00000515663	ENST00000515663		ChiTaRS3.1			AI492202	CAST	chr5	96058370	-	CAST	chr5	96108845	-
5CDS-3UTR	ENST00000599117	ENST00000434271		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000599117	ENST00000353047		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000599117	ENST00000530640		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000599117	ENST00000531089		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000453527		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000415599		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000345125		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000533455		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000534510		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000599117	ENST00000525076		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000432763	ENST00000434271		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000432763	ENST00000353047		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000432763	ENST00000530640		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000432763	ENST00000531089		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000453527		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000415599		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000345125		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000533455		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000534510		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000432763	ENST00000525076		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000402194	ENST00000434271		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000402194	ENST00000353047		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000402194	ENST00000530640		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000402194	ENST00000531089		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000453527		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000415599		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000345125		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000533455		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000534510		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000402194	ENST00000525076		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000359191	ENST00000434271		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000359191	ENST00000353047		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000359191	ENST00000530640		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000359191	ENST00000531089		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000453527		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000415599		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000345125		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000533455		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000534510		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000359191	ENST00000525076		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000598725	ENST00000434271		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000598725	ENST00000353047		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000598725	ENST00000530640		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-3UTR	ENST00000598725	ENST00000531089		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000453527		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000415599		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000345125		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000533455		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000534510		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
5CDS-intron	ENST00000598725	ENST00000525076		ChiTaRS3.1			BF754892	SUPT5H	chr19	39959434	-	CTSB	chr8	11701700	+
intron-intron	ENST00000319386	ENST00000319386		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000319386	ENST00000407970		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000319386	ENST00000482748		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000319386	ENST00000451887		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000319386	ENST00000409210		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000407970	ENST00000319386		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000407970	ENST00000407970		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000407970	ENST00000482748		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000407970	ENST00000451887		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000407970	ENST00000409210		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000482748	ENST00000319386		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000482748	ENST00000407970		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000482748	ENST00000482748		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000482748	ENST00000451887		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000482748	ENST00000409210		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000451887	ENST00000319386		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000451887	ENST00000407970		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000451887	ENST00000482748		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000451887	ENST00000451887		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000451887	ENST00000409210		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000409210	ENST00000319386		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000409210	ENST00000407970		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000409210	ENST00000482748		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000409210	ENST00000451887		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000409210	ENST00000409210		ChiTaRS3.1			AW891032	CCDC129	chr7	31694818	-	CCDC129	chr7	31695172	+
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AA811452	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-3UTR	ENST00000547956	ENST00000595437		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000547956	ENST00000376586		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000547956	ENST00000319562		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000547956	ENST00000376581		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000547956	ENST00000593990		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000549260	ENST00000595437		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000549260	ENST00000376586		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000549260	ENST00000319562		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000549260	ENST00000376581		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000549260	ENST00000593990		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000303694	ENST00000595437		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000303694	ENST00000376586		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000303694	ENST00000319562		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000303694	ENST00000376581		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000303694	ENST00000593990		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000546689	ENST00000595437		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000546689	ENST00000376586		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000546689	ENST00000319562		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000546689	ENST00000376581		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000546689	ENST00000593990		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000550711	ENST00000595437		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000550711	ENST00000376586		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-3UTR	ENST00000550711	ENST00000319562		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000550711	ENST00000376581		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000550711	ENST00000593990		ChiTaRS3.1			BF926212	CHST11	chr12	104956050	-	FARP1	chr13	99101721	+
intron-intron	ENST00000371191	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371191	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000407417	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000479364	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371189	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000403491	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371187	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000485903	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371185	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000371184	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000366574		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000360064		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000542537		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000357977	ENST00000609119		ChiTaRS3.1			BX479192	NFIA	chr1	61717886	+	RYR2	chr1	237928095	-
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BG122832	CD59	chr11	33730488	+	CD59	chr11	33730734	-
intron-intron	ENST00000538689	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000220584	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000446331	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000443614	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000525900	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000528812	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000530664	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000528643	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000525777	ENST00000264245		ChiTaRS3.1			BF996032	FDFT1	chr8	11684537	-	ARHGAP31	chr3	119045546	+
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY840547	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-3CDS	ENST00000507166	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507166	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507166	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507166	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507166	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-intron	ENST00000507166	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000358575	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000358575	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000358575	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000358575	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000358575	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
5CDS-intron	ENST00000358575	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000337488	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000337488	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000337488	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000337488	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000337488	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
5CDS-intron	ENST00000337488	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507922	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507922	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507922	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507922	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000507922	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-intron	ENST00000507922	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000306932	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000306932	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000306932	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000306932	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000306932	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
5CDS-intron	ENST00000306932	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000510668	ENST00000507166		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000510668	ENST00000358575		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000510668	ENST00000337488		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000510668	ENST00000507922		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-3CDS	ENST00000510668	ENST00000306932		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
intron-intron	ENST00000510668	ENST00000510668		ChiTaRS3.1			BF763372	FIP1L1	chr4	54310271	+	FIP1L1	chr4	54292038	+
Frame-shit	ENST00000323570	ENST00000323570		ChiTaRS3.1			BQ215622	ELMOD2	chr4	141471470	-	ELMOD2	chr4	141471495	+
5CDS-intron	ENST00000323570	ENST00000511887		ChiTaRS3.1			BQ215622	ELMOD2	chr4	141471470	-	ELMOD2	chr4	141471495	+
intron-3CDS	ENST00000511887	ENST00000323570		ChiTaRS3.1			BQ215622	ELMOD2	chr4	141471470	-	ELMOD2	chr4	141471495	+
intron-intron	ENST00000511887	ENST00000511887		ChiTaRS3.1			BQ215622	ELMOD2	chr4	141471470	-	ELMOD2	chr4	141471495	+
intron-3UTR	ENST00000258646	ENST00000258646		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000258646	ENST00000378302		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000258646	ENST00000471984		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000258646	ENST00000546015		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000378302	ENST00000258646		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000378302	ENST00000378302		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000378302	ENST00000471984		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000378302	ENST00000546015		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000471984	ENST00000258646		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000471984	ENST00000378302		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000471984	ENST00000471984		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000471984	ENST00000546015		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000546015	ENST00000258646		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-3UTR	ENST00000546015	ENST00000378302		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000546015	ENST00000471984		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000546015	ENST00000546015		ChiTaRS3.1			AA228682	RCBTB1	chr13	50106709	-	RCBTB1	chr13	50106819	+
intron-intron	ENST00000371837	ENST00000361654		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000545889		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000302528		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000358808		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000537178		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000540338		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000536634		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000371837	ENST00000540539		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000361654		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000545889		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000302528		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000358808		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000537178		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000540338		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000536634		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000487618	ENST00000540539		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000361654		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000545889		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000302528		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000358808		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000537178		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000540338		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000536634		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000336233	ENST00000540539		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000361654		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000545889		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000302528		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000358808		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000537178		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000540338		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000536634		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000456827	ENST00000540539		ChiTaRS3.1			BQ346872	LIPA	chr10	91067605	+	CLIP1	chr12	122888910	-
intron-intron	ENST00000427662	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000427662	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000427662	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000427662	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000427662	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000427662	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000369774	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000369774	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000369774	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000369774	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000369774	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000369774	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000355946	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000355946	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000355946	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000355946	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000355946	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000355946	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000315994	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000315994	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000315994	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000315994	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000315994	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000315994	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000540321	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000540321	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000540321	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000540321	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000540321	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000540321	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000538130	ENST00000427662		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000538130	ENST00000369774		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-3UTR	ENST00000538130	ENST00000355946		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000538130	ENST00000315994		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000538130	ENST00000540321		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000538130	ENST00000538130		ChiTaRS3.1			BU739242	SH3PXD2A	chr10	105356122	-	SH3PXD2A	chr10	105357112	-
intron-intron	ENST00000474210	ENST00000295470		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000349655		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000602300		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000502762		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000474210	ENST00000514511		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000295470		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000349655		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000602300		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000502762		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000394231	ENST00000514511		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000295470		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000349655		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000602300		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000502762		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
intron-intron	ENST00000577810	ENST00000514511		ChiTaRS3.1			AA456092	MIEN1	chr17	37885624	+	HNRNPDL	chr4	83346687	+
5CDS-3UTR	ENST00000374550	ENST00000462138		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
5CDS-intron	ENST00000374550	ENST00000423525		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
5CDS-5UTR	ENST00000374550	ENST00000461139		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
5CDS-3UTR	ENST00000374550	ENST00000423516		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
5CDS-3UTR	ENST00000374550	ENST00000296289		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
3UTR-3UTR	ENST00000482370	ENST00000462138		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
3UTR-intron	ENST00000482370	ENST00000423525		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
3UTR-5UTR	ENST00000482370	ENST00000461139		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
3UTR-3UTR	ENST00000482370	ENST00000423516		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
3UTR-3UTR	ENST00000482370	ENST00000296289		ChiTaRS3.1			CD388242	RPL11	chr1	24020406	+	TKT	chr3	53259752	-
intron-3UTR	ENST00000372070	ENST00000265350		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000372070	ENST00000467535		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000372070	ENST00000409312		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000372070	ENST00000409060		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000265350		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000351829	ENST00000467535		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000409312		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000351829	ENST00000409060		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000265350		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-5UTR	ENST00000471651	ENST00000467535		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000409312		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-intron	ENST00000471651	ENST00000409060		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000265350		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000473038	ENST00000467535		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000409312		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000473038	ENST00000409060		ChiTaRS3.1			AF116602	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000355078	ENST00000355078		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000355078	ENST00000302763		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000355078	ENST00000518825		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000355078	ENST00000520400		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000355078	ENST00000540387		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000302763	ENST00000355078		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000302763	ENST00000302763		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000302763	ENST00000518825		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000302763	ENST00000520400		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000302763	ENST00000540387		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000518825	ENST00000355078		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000518825	ENST00000302763		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000518825	ENST00000518825		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000518825	ENST00000520400		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000518825	ENST00000540387		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000520400	ENST00000355078		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000520400	ENST00000302763		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000520400	ENST00000518825		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000520400	ENST00000520400		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000520400	ENST00000540387		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000540387	ENST00000355078		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000540387	ENST00000302763		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000540387	ENST00000518825		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000540387	ENST00000520400		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000540387	ENST00000540387		ChiTaRS3.1			CV409602	CTNNA1	chr5	138187998	-	CTNNA1	chr5	138187909	+
intron-intron	ENST00000255194	ENST00000255194		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000255194	ENST00000519295		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000255194	ENST00000523204		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000519295	ENST00000255194		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000519295	ENST00000519295		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000519295	ENST00000523204		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000523204	ENST00000255194		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000523204	ENST00000519295		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
intron-intron	ENST00000523204	ENST00000523204		ChiTaRS3.1			BF335662	AP3B1	chr5	77401966	+	AP3B1	chr5	77401339	-
3UTR-3UTR	ENST00000326648	ENST00000326648		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
3UTR-intron	ENST00000326648	ENST00000416172		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
3UTR-intron	ENST00000326648	ENST00000559364		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-3UTR	ENST00000416172	ENST00000326648		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-intron	ENST00000416172	ENST00000416172		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-intron	ENST00000416172	ENST00000559364		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-3UTR	ENST00000559364	ENST00000326648		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-intron	ENST00000559364	ENST00000416172		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-intron	ENST00000559364	ENST00000559364		ChiTaRS3.1			BG105862	ZNF609	chr15	64978075	-	ZNF609	chr15	64978144	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BQ371512	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000378863	ENST00000352903		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378863	ENST00000537232		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378863	ENST00000561221		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378863	ENST00000558083		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378863	ENST00000559142		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378863	ENST00000560582		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000352903		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000537232		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000561221		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000558083		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000559142		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000452938	ENST00000560582		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000352903		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000537232		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000561221		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000558083		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000559142		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000378868	ENST00000560582		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000352903		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000537232		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000561221		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000558083		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000559142		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
intron-intron	ENST00000464921	ENST00000560582		ChiTaRS3.1			AK129562	CRLS1	chr20	6009972	+	TEX9	chr15	56721272	-
3UTR-3UTR	ENST00000370396	ENST00000370396		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
3UTR-intron	ENST00000370396	ENST00000542741		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
3UTR-intron	ENST00000370396	ENST00000543350		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
3UTR-intron	ENST00000370396	ENST00000306167		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
3UTR-intron	ENST00000370396	ENST00000413012		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-3UTR	ENST00000542741	ENST00000370396		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000542741	ENST00000542741		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000542741	ENST00000543350		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000542741	ENST00000306167		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000542741	ENST00000413012		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-3UTR	ENST00000543350	ENST00000370396		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000543350	ENST00000542741		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000543350	ENST00000543350		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000543350	ENST00000306167		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000543350	ENST00000413012		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-3UTR	ENST00000306167	ENST00000370396		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000306167	ENST00000542741		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000306167	ENST00000543350		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000306167	ENST00000306167		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000306167	ENST00000413012		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-3UTR	ENST00000413012	ENST00000370396		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000413012	ENST00000542741		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000413012	ENST00000543350		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000413012	ENST00000306167		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000413012	ENST00000413012		ChiTaRS3.1			AA506682	MTM1	chrX	149841357	+	MTM1	chrX	149841387	-
intron-intron	ENST00000534064	ENST00000380122		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000534064	ENST00000398155		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000534064	ENST00000485153		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000535943	ENST00000380122		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000535943	ENST00000398155		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000535943	ENST00000485153		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000525931	ENST00000380122		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000525931	ENST00000398155		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000525931	ENST00000485153		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000529807	ENST00000380122		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000529807	ENST00000398155		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000529807	ENST00000485153		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000527522	ENST00000380122		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000527522	ENST00000398155		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000527522	ENST00000485153		ChiTaRS3.1			BU732522	INTS4	chr11	77690489	+	TXLNG	chrX	16854126	-
intron-intron	ENST00000378004	ENST00000519301		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000520407		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000523079		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000338921		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000356819		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000287845		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000341377		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000287842		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000521670		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000405005		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000520502		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000539990		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000378004	ENST00000523681		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000519301		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000520407		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000523079		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000338921		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000356819		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000287845		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000341377		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000287842		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000521670		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000405005		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000520502		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000539990		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000274498	ENST00000523681		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000519301		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000520407		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000523079		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000338921		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000356819		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000287845		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000341377		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000287842		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000521670		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000405005		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000520502		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000539990		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
intron-intron	ENST00000486650	ENST00000523681		ChiTaRS3.1			BF959772	ARHGAP26	chr5	142164847	-	NRG1	chr8	31849790	+
In-frame	ENST00000543491	ENST00000356415		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
In-frame	ENST00000543491	ENST00000436150		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
In-frame	ENST00000543491	ENST00000369709		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
In-frame	ENST00000543491	ENST00000545460		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
5CDS-3UTR	ENST00000543491	ENST00000494982		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000509925	ENST00000356415		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000509925	ENST00000436150		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000509925	ENST00000369709		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000509925	ENST00000545460		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3UTR	ENST00000509925	ENST00000494982		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000361762	ENST00000356415		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000361762	ENST00000436150		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000361762	ENST00000369709		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3CDS	ENST00000361762	ENST00000545460		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3UTR	ENST00000361762	ENST00000494982		ChiTaRS3.1			BF948052	PCDH7	chr4	31144315	-	RAP1A	chr1	112237972	+
intron-3UTR	ENST00000395863	ENST00000307602		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-intron	ENST00000395863	ENST00000524839		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-3UTR	ENST00000395864	ENST00000307602		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-intron	ENST00000395864	ENST00000524839		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-3UTR	ENST00000450594	ENST00000307602		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-intron	ENST00000450594	ENST00000524839		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-3UTR	ENST00000460817	ENST00000307602		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
intron-intron	ENST00000460817	ENST00000524839		ChiTaRS3.1			BF919052	BMP7	chr20	55790899	-	HOOK3	chr8	42879346	+
3UTR-intron	ENST00000373189	ENST00000548446		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-3UTR	ENST00000373189	ENST00000420353		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-3UTR	ENST00000373189	ENST00000415113		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-3UTR	ENST00000373189	ENST00000456903		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-intron	ENST00000373189	ENST00000548118		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-intron	ENST00000373189	ENST00000591397		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-3UTR	ENST00000373189	ENST00000328463		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
3UTR-intron	ENST00000373189	ENST00000546661		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-intron	ENST00000469204	ENST00000548446		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-3UTR	ENST00000469204	ENST00000420353		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-3UTR	ENST00000469204	ENST00000415113		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-3UTR	ENST00000469204	ENST00000456903		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-intron	ENST00000469204	ENST00000548118		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-intron	ENST00000469204	ENST00000591397		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-3UTR	ENST00000469204	ENST00000328463		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-intron	ENST00000469204	ENST00000546661		ChiTaRS3.1			BF764042	SLC29A3	chr10	73122391	-	ATF7	chr12	53908885	-
intron-3UTR	ENST00000259199	ENST00000344063		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000431533		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000428193		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558815		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000259199	ENST00000560583		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000560055		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000559463		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558131		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558752		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000458349		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000344063		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000431533		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000428193		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558815		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000560583		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000560055		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000559463		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558131		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558752		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000458349		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000344063		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000431533		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000428193		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558815		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000560583		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000560055		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000559463		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558131		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558752		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000458349		ChiTaRS3.1			BQ648662	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000446450	ENST00000446450		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000446450	ENST00000354956		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000446450	ENST00000354449		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000446450	ENST00000469654		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354956	ENST00000446450		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354956	ENST00000354956		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354956	ENST00000354449		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354956	ENST00000469654		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354449	ENST00000446450		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354449	ENST00000354956		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354449	ENST00000354449		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000354449	ENST00000469654		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000469654	ENST00000446450		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000469654	ENST00000354956		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000469654	ENST00000354449		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000469654	ENST00000469654		ChiTaRS3.1			CK824912	ATG7	chr3	11500877	+	ATG7	chr3	11500028	+
intron-intron	ENST00000610191	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000610191	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000356098	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000216124	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547307	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000547805	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395621	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000453344	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000610191		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000356098		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000216124		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000547307		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000547805		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000395621		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000453344		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
intron-intron	ENST00000395619	ENST00000395619		ChiTaRS3.1			BF932162	ARSA	chr22	51065065	-	ARSA	chr22	51064666	+
3UTR-3CDS	ENST00000417689	ENST00000417689		ChiTaRS3.1			CA427622	CES2	chr16	66978540	+	CES2	chr16	66976615	+
3UTR-3CDS	ENST00000417689	ENST00000317091		ChiTaRS3.1			CA427622	CES2	chr16	66978540	+	CES2	chr16	66976615	+
3UTR-3CDS	ENST00000317091	ENST00000417689		ChiTaRS3.1			CA427622	CES2	chr16	66978540	+	CES2	chr16	66976615	+
3UTR-3CDS	ENST00000317091	ENST00000317091		ChiTaRS3.1			CA427622	CES2	chr16	66978540	+	CES2	chr16	66976615	+
intron-3CDS	ENST00000341460	ENST00000341460		ChiTaRS3.1			AU141312	SYDE2	chr1	85648270	-	SYDE2	chr1	85666456	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW996942	MALAT1	chr11	65268122	+	MALAT1	chr11	65267747	+
intron-intron	ENST00000356284	ENST00000409673		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000356284	ENST00000272732		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000356284	ENST00000548921		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000354536	ENST00000409673		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000354536	ENST00000272732		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000354536	ENST00000548921		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000477998	ENST00000409673		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000477998	ENST00000272732		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-intron	ENST00000477998	ENST00000548921		ChiTaRS3.1			CA412182	SMOC2	chr6	169056939	+	SCRN3	chr2	175287024	-
intron-3CDS	ENST00000462138	ENST00000238571		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000462138	ENST00000325680		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000462138	ENST00000552421		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000462138	ENST00000546901		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000238571		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000325680		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423525	ENST00000552421		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000423525	ENST00000546901		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000238571		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000325680		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000461139	ENST00000552421		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000461139	ENST00000546901		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000238571		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000325680		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000423516	ENST00000552421		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000423516	ENST00000546901		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000238571		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000325680		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-3CDS	ENST00000296289	ENST00000552421		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
intron-intron	ENST00000296289	ENST00000546901		ChiTaRS3.1			BE740522	TKT	chr3	53264500	+	YLPM1	chr14	75269354	+
3UTR-intron	ENST00000534336	ENST00000230323		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
3UTR-intron	ENST00000534336	ENST00000358871		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
3UTR-intron	ENST00000534336	ENST00000420312		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
3UTR-intron	ENST00000534336	ENST00000403298		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
3UTR-intron	ENST00000534336	ENST00000373033		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
3UTR-intron	ENST00000534336	ENST00000394283		ChiTaRS3.1			AJ535462	MALAT1	chr11	65266903	+	TFEB	chr6	41659210	-
intron-3UTR	ENST00000394121	ENST00000229268		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000394121	ENST00000389231		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-intron	ENST00000394121	ENST00000541969		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000264637	ENST00000229268		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000264637	ENST00000389231		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-intron	ENST00000264637	ENST00000541969		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000584985	ENST00000229268		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000584985	ENST00000389231		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-intron	ENST00000584985	ENST00000541969		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000450525	ENST00000229268		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000450525	ENST00000389231		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-intron	ENST00000450525	ENST00000541969		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000546243	ENST00000229268		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000546243	ENST00000389231		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-intron	ENST00000546243	ENST00000541969		ChiTaRS3.1			CN414562	THRA	chr17	38249138	-	USP5	chr12	6975693	+
intron-3UTR	ENST00000354329	ENST00000399410		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000354329	ENST00000349029		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000354329	ENST00000351154		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000354329	ENST00000399408		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000354329	ENST00000345148		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000354329	ENST00000346370		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-intron	ENST00000354329	ENST00000576557		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000399410		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000349029		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000351154		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000399408		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000345148		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000529578	ENST00000346370		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-intron	ENST00000529578	ENST00000576557		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000399410		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000349029		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000351154		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000399408		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000345148		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000533112	ENST00000346370		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-intron	ENST00000533112	ENST00000576557		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000399410		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000349029		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000351154		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000399408		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000345148		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000531253	ENST00000346370		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-intron	ENST00000531253	ENST00000576557		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000399410		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000349029		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000351154		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000399408		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000345148		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3UTR	ENST00000527372	ENST00000346370		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-intron	ENST00000527372	ENST00000576557		ChiTaRS3.1			BF827842	MYO18A	chr17	27441566	-	ABCC1	chr16	16235382	-
intron-3CDS	ENST00000395957	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395957	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395957	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395957	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395957	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395957	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395957	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395958	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395958	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000457309	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000457309	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395956	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395956	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000353245	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000353245	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522542	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000522542	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000521309	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000521309	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000522819	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000522819	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395953	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395953	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395948	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395948	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000395951	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000395951	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000419477	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000419477	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000358183		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000414043		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000361571		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000572543		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000381311		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3CDS	ENST00000492736	ENST00000348066		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-intron	ENST00000492736	ENST00000571831		ChiTaRS3.1			BG985122	YWHAZ	chr8	101943701	+	CAMTA2	chr17	4875587	+
intron-3UTR	ENST00000216037	ENST00000216037		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000216037	ENST00000403532		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000216037	ENST00000405219		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000216037	ENST00000344347		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000403532	ENST00000216037		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000403532	ENST00000403532		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000403532	ENST00000405219		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000403532	ENST00000344347		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000405219	ENST00000216037		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000405219	ENST00000403532		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000405219	ENST00000405219		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000405219	ENST00000344347		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000344347	ENST00000216037		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-3UTR	ENST00000344347	ENST00000403532		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000344347	ENST00000405219		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000344347	ENST00000344347		ChiTaRS3.1			AW956952	XBP1	chr22	29191455	-	XBP1	chr22	29190572	+
intron-intron	ENST00000426174	ENST00000260403		ChiTaRS3.1			AW013912	TCTN2	chr12	124192822	-	TMEM62	chr15	43447143	-
intron-intron	ENST00000426174	ENST00000569369		ChiTaRS3.1			AW013912	TCTN2	chr12	124192822	-	TMEM62	chr15	43447143	-
3UTR-intron	ENST00000303372	ENST00000260403		ChiTaRS3.1			AW013912	TCTN2	chr12	124192822	-	TMEM62	chr15	43447143	-
3UTR-intron	ENST00000303372	ENST00000569369		ChiTaRS3.1			AW013912	TCTN2	chr12	124192822	-	TMEM62	chr15	43447143	-
intron-intron	ENST00000357154	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000357154	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000357154	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000357545	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000357545	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000357545	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000504953	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000504953	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000504953	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511531	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511531	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511531	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000506886	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000506886	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000506886	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000507137	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000507137	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000507137	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000510741	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000510741	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000510741	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000502330	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000502330	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000502330	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541354	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541354	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541354	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512681	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512681	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512681	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511269	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511269	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000511269	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000535728	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000535728	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000535728	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000421836	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000421836	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000421836	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000534949	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000534949	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000534949	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541637	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541637	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000541637	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512648	ENST00000338316		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512648	ENST00000537121		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000512648	ENST00000513693		ChiTaRS3.1			BM968972	SPOCK3	chr4	167654988	+	ADCY2	chr1	152005098	-
intron-intron	ENST00000348405	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000348405	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000513858	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000395310	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000443462	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000509142	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000326950	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000432794	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000311785	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000448323	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505472	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000500777	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508502	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000355196	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000264405	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000505984	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000508479	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000348405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000513858		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000395310		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000443462		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000509142		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000326950		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000432794		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000311785		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000448323		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000505472		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000500777		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000508502		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000355196		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000264405		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000505984		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000508479		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-intron	ENST00000436790	ENST00000436790		ChiTaRS3.1			AV746752	SEC31A	chr4	83741210	-	SEC31A	chr4	83742435	-
intron-3CDS	ENST00000371649	ENST00000371649		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000371649	ENST00000224073		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000371649	ENST00000371648		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000224073	ENST00000371649		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000224073	ENST00000224073		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000224073	ENST00000371648		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000371648	ENST00000371649		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000371648	ENST00000224073		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000371648	ENST00000371648		ChiTaRS3.1			AA659192	EDF1	chr9	139756889	-	EDF1	chr9	139757433	+
intron-3CDS	ENST00000529163	ENST00000331925		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000529163	ENST00000573283		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000529163	ENST00000575842		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000529163	ENST00000575087		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000394920	ENST00000331925		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000394920	ENST00000573283		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000394920	ENST00000575842		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000394920	ENST00000575087		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000527914	ENST00000331925		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000527914	ENST00000573283		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000527914	ENST00000575842		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000527914	ENST00000575087		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000262584	ENST00000331925		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000262584	ENST00000573283		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000262584	ENST00000575842		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000262584	ENST00000575087		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000528957	ENST00000331925		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000528957	ENST00000573283		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000528957	ENST00000575842		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-3CDS	ENST00000528957	ENST00000575087		ChiTaRS3.1			BQ949002	RPL8	chr8	146017527	+	ACTG1	chr17	79478365	-
intron-intron	ENST00000422819	ENST00000422819		ChiTaRS3.1			BU676062	CCDC162P	chr6	109675907	-	CCDC162P	chr6	109675829	+
5CDS-3UTR	ENST00000332707	ENST00000332707		ChiTaRS3.1			BF087922	XPOT	chr12	64828611	-	XPOT	chr12	64842127	+
intron-intron	ENST00000372811	ENST00000267731		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372811	ENST00000569811		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372811	ENST00000342314		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372811	ENST00000438958		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000420632	ENST00000267731		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000420632	ENST00000569811		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000420632	ENST00000342314		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000420632	ENST00000438958		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372809	ENST00000267731		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372809	ENST00000569811		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372809	ENST00000342314		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000372809	ENST00000438958		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000480630	ENST00000267731		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000480630	ENST00000569811		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000480630	ENST00000342314		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000480630	ENST00000438958		ChiTaRS3.1			AF164622	MFSD2A	chr1	40427920	+	GOLGA8B	chr15	34825911	-
intron-intron	ENST00000358196	ENST00000545260		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000545693		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000350537		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000346874		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374789		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374790		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374794		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374788		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000466092		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374776		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000340077		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000544292		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374773		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000358196	ENST00000374768		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000545260		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000545693		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000350537		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000346874		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374789		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374790		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374794		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374788		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000466092		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374776		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000340077		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000544292		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374773		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000375272	ENST00000374768		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000545260		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000545693		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000350537		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000346874		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374789		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374790		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374794		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374788		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000466092		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374776		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000340077		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000544292		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374773		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000344257	ENST00000374768		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000545260		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000545693		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000350537		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000346874		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374789		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374790		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374794		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374788		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000466092		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374776		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000340077		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000544292		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374773		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-intron	ENST00000429023	ENST00000374768		ChiTaRS3.1			AW609892	GAD1	chr2	171690286	+	PARD3	chr10	34606035	+
intron-3UTR	ENST00000373542	ENST00000294794		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373542	ENST00000367940		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373542	ENST00000367938		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-3UTR	ENST00000373545	ENST00000294794		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373545	ENST00000367940		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373545	ENST00000367938		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-3UTR	ENST00000541944	ENST00000294794		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000541944	ENST00000367940		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000541944	ENST00000367938		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-3UTR	ENST00000339490	ENST00000294794		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000339490	ENST00000367940		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000339490	ENST00000367938		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-3UTR	ENST00000373539	ENST00000294794		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373539	ENST00000367940		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000373539	ENST00000367938		ChiTaRS3.1			AA328772	PHKA1	chrX	71880545	+	OLFML2B	chr1	161953124	-
intron-intron	ENST00000437600	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000437600	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292538	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000393824	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000547394	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000360264	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000425244	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000292535	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000549414	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000556210	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000550008	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000546411	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000437600		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000292538		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000393824		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000547394		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000360264		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000425244		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000292535		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000549414		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000556210		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000550008		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000546411		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-intron	ENST00000560541	ENST00000560541		ChiTaRS3.1			AW810962	CUX1	chr7	101619857	-	CUX1	chr7	101616719	+
intron-3CDS	ENST00000394936	ENST00000368378		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394936	ENST00000541576		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394936	ENST00000457183		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394936	ENST00000541990		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-intron	ENST00000394936	ENST00000486260		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394934	ENST00000368378		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394934	ENST00000541576		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394934	ENST00000457183		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-3CDS	ENST00000394934	ENST00000541990		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
intron-intron	ENST00000394934	ENST00000486260		ChiTaRS3.1			BG995962	PSAP	chr10	73576299	-	THBS3	chr1	155167941	-
5CDS-3UTR	ENST00000357710	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000324501	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000344094	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000261970	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000394164	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000557511	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000406768	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000394157	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-3UTR	ENST00000553447	ENST00000375749		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000375730		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000539210		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000486717		ChiTaRS3.1			AW374362	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-5UTR	ENST00000349703	ENST00000519097		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000380036		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000406359		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000519097		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000380036		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000406359		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000519097		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000380036		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000406359		ChiTaRS3.1			AI760472	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-3CDS	ENST00000266604	ENST00000263754		ChiTaRS3.1			AI083552	LLPH	chr12	66531902	+	KAT2B	chr3	20181781	-
intron-intron	ENST00000266604	ENST00000426228		ChiTaRS3.1			AI083552	LLPH	chr12	66531902	+	KAT2B	chr3	20181781	-
intron-3CDS	ENST00000446587	ENST00000263754		ChiTaRS3.1			AI083552	LLPH	chr12	66531902	+	KAT2B	chr3	20181781	-
intron-intron	ENST00000446587	ENST00000426228		ChiTaRS3.1			AI083552	LLPH	chr12	66531902	+	KAT2B	chr3	20181781	-
intron-3UTR	ENST00000295400	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000295400	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000295400	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000295400	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000295400	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000295400	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-3UTR	ENST00000445399	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000445399	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000445399	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000445399	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000445399	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000445399	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-3UTR	ENST00000418333	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000418333	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000418333	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000418333	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000418333	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000418333	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-3UTR	ENST00000450929	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000450929	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000450929	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000450929	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000450929	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000450929	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-3UTR	ENST00000444975	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000444975	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000444975	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000444975	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000444975	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000444975	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-3UTR	ENST00000460808	ENST00000295400		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000460808	ENST00000445399		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000460808	ENST00000418333		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000460808	ENST00000450929		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000460808	ENST00000444975		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000460808	ENST00000460808		ChiTaRS3.1			AW262052	TGFA	chr2	70674639	+	TGFA	chr2	70674681	-
intron-intron	ENST00000319592	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000319592	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000319592	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000319592	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000319592	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000319592	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381793	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000381795	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000295971	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000514014	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000319592		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000381793		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000381795		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000295971		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000514014		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-intron	ENST00000515809	ENST00000515809		ChiTaRS3.1			BE833842	RBM47	chr4	40462058	-	RBM47	chr4	40462687	-
intron-3CDS	ENST00000456935	ENST00000377811		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
intron-3CDS	ENST00000456935	ENST00000276062		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
intron-3CDS	ENST00000221363	ENST00000377811		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
intron-3CDS	ENST00000221363	ENST00000276062		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
intron-3CDS	ENST00000495617	ENST00000377811		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
intron-3CDS	ENST00000495617	ENST00000276062		ChiTaRS3.1			BC007362	MAN2B1	chr19	12763280	+	NDUFB11	chrX	47004071	-
3UTR-3UTR	ENST00000375990	ENST00000375990		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-3UTR	ENST00000375990	ENST00000259253		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-intron	ENST00000375990	ENST00000465836		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-3UTR	ENST00000259253	ENST00000375990		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-3UTR	ENST00000259253	ENST00000259253		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-intron	ENST00000259253	ENST00000465836		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
intron-3UTR	ENST00000465836	ENST00000375990		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
intron-3UTR	ENST00000465836	ENST00000259253		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
intron-intron	ENST00000465836	ENST00000465836		ChiTaRS3.1			BM463172	UGGT1	chr2	128951664	+	UGGT1	chr2	128949366	+
3UTR-3CDS	ENST00000452733	ENST00000452733		ChiTaRS3.1			BE218792	CYTH2	chr19	48982573	-	CYTH2	chr19	48981579	+
3UTR-3CDS	ENST00000452733	ENST00000427476		ChiTaRS3.1			BE218792	CYTH2	chr19	48982573	-	CYTH2	chr19	48981579	+
3UTR-3CDS	ENST00000427476	ENST00000452733		ChiTaRS3.1			BE218792	CYTH2	chr19	48982573	-	CYTH2	chr19	48981579	+
3UTR-3CDS	ENST00000427476	ENST00000427476		ChiTaRS3.1			BE218792	CYTH2	chr19	48982573	-	CYTH2	chr19	48981579	+
intron-intron	ENST00000521308	ENST00000399002		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000521308	ENST00000378194		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000521308	ENST00000476791		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000399002		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000378194		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000476791		ChiTaRS3.1			BF987332	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-3CDS	ENST00000464845	ENST00000370854		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000464845	ENST00000393760		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000464845	ENST00000370846		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000464845	ENST00000352634		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000464845	ENST00000353979		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000464845	ENST00000370842		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000464845	ENST00000345745		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3UTR	ENST00000464845	ENST00000495735		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000370015	ENST00000370854		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000370015	ENST00000393760		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370015	ENST00000370846		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370015	ENST00000352634		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370015	ENST00000353979		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370015	ENST00000370842		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370015	ENST00000345745		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3UTR	ENST00000370015	ENST00000495735		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000393712	ENST00000370854		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000393712	ENST00000393760		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393712	ENST00000370846		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393712	ENST00000352634		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393712	ENST00000353979		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393712	ENST00000370842		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393712	ENST00000345745		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3UTR	ENST00000393712	ENST00000495735		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000370009	ENST00000370854		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000370009	ENST00000393760		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370009	ENST00000370846		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370009	ENST00000352634		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370009	ENST00000353979		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370009	ENST00000370842		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000370009	ENST00000345745		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3UTR	ENST00000370009	ENST00000495735		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000393710	ENST00000370854		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000393710	ENST00000393760		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393710	ENST00000370846		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393710	ENST00000352634		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393710	ENST00000353979		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393710	ENST00000370842		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-intron	ENST00000393710	ENST00000345745		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3UTR	ENST00000393710	ENST00000495735		ChiTaRS3.1			BF916762	NAA10	chrX	153196224	-	ZDHHC16	chr10	99213322	-
intron-3CDS	ENST00000310351	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000310351	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000310351	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000310351	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000310351	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000310351	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000488653	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000488653	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000488653	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000488653	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000488653	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000488653	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000485727	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000485727	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000485727	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000485727	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000485727	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000485727	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000489746	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000489746	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000489746	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000489746	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000489746	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000489746	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000433542	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000433542	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000433542	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000433542	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000433542	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000433542	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000483247	ENST00000310351		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000483247	ENST00000488653		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000483247	ENST00000485727		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000483247	ENST00000489746		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000483247	ENST00000433542		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-intron	ENST00000483247	ENST00000483247		ChiTaRS3.1			AW850012	CCDC14	chr3	123634241	-	CCDC14	chr3	123665996	-
intron-3CDS	ENST00000373103	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373103	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373103	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373103	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000373103	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373106	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373106	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373106	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373106	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000373106	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373104	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373104	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373104	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000373104	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000373104	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000361632	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000361632	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000361632	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000361632	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000361632	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000331941	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000331941	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000331941	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000331941	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000331941	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000487540	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000487540	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000487540	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000487540	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000487540	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000418048	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000418048	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000418048	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000418048	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000418048	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000338937	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000338937	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000338937	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000338937	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000338937	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000440588	ENST00000339788		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000440588	ENST00000320816		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000440588	ENST00000545653		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000440588	ENST00000509337		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-intron	ENST00000440588	ENST00000512525		ChiTaRS3.1			BG006262	CSF3R	chr1	36939400	+	DAB2	chr5	39393378	+
intron-3CDS	ENST00000607016	ENST00000256496		ChiTaRS3.1			BI019122	NUDT3	chr6	34346818	-	ARL8B	chr3	5220393	-
intron-3CDS	ENST00000607016	ENST00000419534		ChiTaRS3.1			BI019122	NUDT3	chr6	34346818	-	ARL8B	chr3	5220393	-
intron-3UTR	ENST00000607016	ENST00000468010		ChiTaRS3.1			BI019122	NUDT3	chr6	34346818	-	ARL8B	chr3	5220393	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911172	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911172	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911172	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911172	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000338687	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000545398	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372939	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372935	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372936	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372931	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000478422	ENST00000573001		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000326577		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000341627		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000575124		ChiTaRS3.1			BI053522	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			AF075002	ANKRD17	chr4	74098733	-	ANKRD17	chr4	74115326	-
intron-intron	ENST00000248600	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000248600	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000359697	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000340062	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000360591	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000431581	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000451157	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000412327		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000335025		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000492445		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000398831		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000406385		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000456792		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000460184	ENST00000446951		ChiTaRS3.1			BE717592	STYXL1	chr7	75634641	+	PPIL2	chr22	22037545	-
intron-intron	ENST00000529225	ENST00000529225		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000529225	ENST00000440460		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000529225	ENST00000389821		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-intron	ENST00000529225	ENST00000531396		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000529225	ENST00000315253		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000440460	ENST00000529225		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000440460	ENST00000440460		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000440460	ENST00000389821		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000440460	ENST00000531396		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000440460	ENST00000315253		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000389821	ENST00000529225		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000389821	ENST00000440460		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000389821	ENST00000389821		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000389821	ENST00000531396		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000389821	ENST00000315253		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-intron	ENST00000531396	ENST00000529225		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000531396	ENST00000440460		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000531396	ENST00000389821		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-intron	ENST00000531396	ENST00000531396		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-3UTR	ENST00000531396	ENST00000315253		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000315253	ENST00000529225		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000315253	ENST00000440460		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000315253	ENST00000389821		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-intron	ENST00000315253	ENST00000531396		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
3UTR-3UTR	ENST00000315253	ENST00000315253		ChiTaRS3.1			AA633772	DIXDC1	chr11	111893083	-	DIXDC1	chr11	111892908	+
intron-5UTR	ENST00000345136	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000345136	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000357649	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000357649	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000354589	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000354589	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000398774	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000398774	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000322810	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000322810	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000354958	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000354958	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000356346	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000356346	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000436759	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000436759	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000527096	ENST00000598155		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-5UTR	ENST00000527096	ENST00000245934		ChiTaRS3.1			BG005652	PLEC	chr8	145001505	+	SYMPK	chr19	46321354	+
intron-3UTR	ENST00000434571	ENST00000434571		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000434571	ENST00000367579		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000434571	ENST00000282990		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000434571	ENST00000367580		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-intron	ENST00000434571	ENST00000438435		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000367579	ENST00000434571		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000367579	ENST00000367579		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000367579	ENST00000282990		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000367579	ENST00000367580		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-intron	ENST00000367579	ENST00000438435		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000282990	ENST00000434571		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000282990	ENST00000367579		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000282990	ENST00000282990		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000282990	ENST00000367580		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-intron	ENST00000282990	ENST00000438435		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000367580	ENST00000434571		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000367580	ENST00000367579		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000367580	ENST00000282990		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-3UTR	ENST00000367580	ENST00000367580		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
3UTR-intron	ENST00000367580	ENST00000438435		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000438435	ENST00000434571		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000438435	ENST00000367579		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000438435	ENST00000282990		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000438435	ENST00000367580		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-intron	ENST00000438435	ENST00000438435		ChiTaRS3.1			BF883362	MR1	chr1	181024832	-	MR1	chr1	181024531	+
intron-3UTR	ENST00000344922	ENST00000324932		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000344922	ENST00000359171		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344922	ENST00000355260		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344922	ENST00000397004		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344922	ENST00000397007		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344922	ENST00000488828		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000344441	ENST00000324932		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000344441	ENST00000359171		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344441	ENST00000355260		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344441	ENST00000397004		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344441	ENST00000397007		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344441	ENST00000488828		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000344507	ENST00000324932		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000344507	ENST00000359171		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344507	ENST00000355260		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344507	ENST00000397004		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344507	ENST00000397007		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000344507	ENST00000488828		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000340535	ENST00000324932		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000340535	ENST00000359171		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000340535	ENST00000355260		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000340535	ENST00000397004		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000340535	ENST00000397007		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000340535	ENST00000488828		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000470521	ENST00000324932		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-3UTR	ENST00000470521	ENST00000359171		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000470521	ENST00000355260		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000470521	ENST00000397004		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000470521	ENST00000397007		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000470521	ENST00000488828		ChiTaRS3.1			AI168219	MIA3	chr1	222824586	+	NUP98	chr11	3696249	+
intron-intron	ENST00000302279	ENST00000302279		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000302279	ENST00000342116		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000302279	ENST00000524546		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000302279	ENST00000529687		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000342116	ENST00000302279		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000342116	ENST00000342116		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000342116	ENST00000524546		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000342116	ENST00000529687		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000524546	ENST00000302279		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000524546	ENST00000342116		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000524546	ENST00000524546		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000524546	ENST00000529687		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000529687	ENST00000302279		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000529687	ENST00000342116		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000529687	ENST00000524546		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
intron-intron	ENST00000529687	ENST00000529687		ChiTaRS3.1			AA493202	FNTA	chr8	42912572	-	FNTA	chr8	42915966	-
3UTR-3CDS	ENST00000227525	ENST00000227525		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
3UTR-3CDS	ENST00000227525	ENST00000536171		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
3UTR-intron	ENST00000227525	ENST00000540280		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
3UTR-3CDS	ENST00000536171	ENST00000227525		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
3UTR-3CDS	ENST00000536171	ENST00000536171		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
3UTR-intron	ENST00000536171	ENST00000540280		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
intron-3CDS	ENST00000540280	ENST00000227525		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
intron-3CDS	ENST00000540280	ENST00000536171		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
intron-intron	ENST00000540280	ENST00000540280		ChiTaRS3.1			BG015922	TMEM109	chr11	60689998	+	TMEM109	chr11	60687252	+
In-frame	ENST00000249373	ENST00000249373		ChiTaRS3.1			BE297232	SMO	chr7	128846407	+	SMO	chr7	128848662	-
intron-5UTR	ENST00000248923	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000248923	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000400382	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000400382	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000400383	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000400383	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000400380	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000400380	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000406383	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000406383	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000466310	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000466310	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000401885	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000401885	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000404532	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000404532	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000403838	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000403838	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000404223	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000404223	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-5UTR	ENST00000404920	ENST00000257347		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000404920	ENST00000535398		ChiTaRS3.1			AW182722	GGT1	chr22	24981689	+	CARS2	chr13	111358446	-
intron-intron	ENST00000524717	ENST00000524717		ChiTaRS3.1			BG003252	MAML2	chr11	95893338	+	MAML2	chr11	95861797	-
5CDS-intron	ENST00000521662	ENST00000310454		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
5CDS-intron	ENST00000521662	ENST00000409125		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
5CDS-intron	ENST00000521662	ENST00000438166		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
5CDS-intron	ENST00000521662	ENST00000540309		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
5CDS-intron	ENST00000521662	ENST00000409674		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
5CDS-intron	ENST00000521662	ENST00000496190		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000310454		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000409125		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000438166		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000540309		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000409674		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000521688	ENST00000496190		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000310454		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000409125		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000438166		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000540309		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000409674		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000520147	ENST00000496190		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000310454		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000409125		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000438166		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000540309		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000409674		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
3UTR-intron	ENST00000522407	ENST00000496190		ChiTaRS3.1			BF310332	ENY2	chr8	110355893	+	GPD2	chr2	157375211	-
Frame-shit	ENST00000304718	ENST00000304718		ChiTaRS3.1			BU674652	GGNBP2	chr17	34937821	-	GGNBP2	chr17	34935710	+
5CDS-intron	ENST00000304718	ENST00000485685		ChiTaRS3.1			BU674652	GGNBP2	chr17	34937821	-	GGNBP2	chr17	34935710	+
intron-3CDS	ENST00000485685	ENST00000304718		ChiTaRS3.1			BU674652	GGNBP2	chr17	34937821	-	GGNBP2	chr17	34935710	+
intron-intron	ENST00000485685	ENST00000485685		ChiTaRS3.1			BU674652	GGNBP2	chr17	34937821	-	GGNBP2	chr17	34935710	+
In-frame	ENST00000415229	ENST00000396863		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000415229	ENST00000217026		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000535727	ENST00000396863		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000535727	ENST00000217026		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000301776	ENST00000396863		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
In-frame	ENST00000301776	ENST00000217026		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000528206	ENST00000396863		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3CDS	ENST00000528206	ENST00000217026		ChiTaRS3.1			BF056302	ASRGL1	chr11	62123847	-	MYBL2	chr20	42341699	-
intron-3UTR	ENST00000394906	ENST00000394906		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000394906	ENST00000394908		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000394906	ENST00000585169		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-5UTR	ENST00000394906	ENST00000577789		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000394908	ENST00000394906		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000394908	ENST00000394908		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000394908	ENST00000585169		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-5UTR	ENST00000394908	ENST00000577789		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000585169	ENST00000394906		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000585169	ENST00000394908		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000585169	ENST00000585169		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-5UTR	ENST00000585169	ENST00000577789		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000577789	ENST00000394906		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000577789	ENST00000394908		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-3UTR	ENST00000577789	ENST00000585169		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
intron-5UTR	ENST00000577789	ENST00000577789		ChiTaRS3.1			AW794342	FLOT2	chr17	27209048	+	FLOT2	chr17	27207434	-
3UTR-5UTR	ENST00000482108	ENST00000216190		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
3UTR-intron	ENST00000482108	ENST00000478547		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
3UTR-5UTR	ENST00000482108	ENST00000541106		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
3UTR-intron	ENST00000482108	ENST00000405442		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-5UTR	ENST00000488574	ENST00000216190		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-intron	ENST00000488574	ENST00000478547		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-5UTR	ENST00000488574	ENST00000541106		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-intron	ENST00000488574	ENST00000405442		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-5UTR	ENST00000465184	ENST00000216190		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-intron	ENST00000465184	ENST00000478547		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-5UTR	ENST00000465184	ENST00000541106		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
intron-intron	ENST00000465184	ENST00000405442		ChiTaRS3.1			BM910722	PEG10	chr7	94298837	-	EIF3D	chr22	36925196	-
5CDS-intron	ENST00000288398	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000288398	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000288398	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000288398	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000288398	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000288398	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000288398	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000358278	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000358278	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000358278	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000358278	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000358278	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000358278	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-3UTR	ENST00000560445	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-3UTR	ENST00000560445	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-3UTR	ENST00000560445	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-3UTR	ENST00000560445	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-3UTR	ENST00000560445	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000560445	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000403994	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000403994	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000403994	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000403994	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000403994	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000403994	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000357980	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000357980	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000357980	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000357980	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000357980	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000357980	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559556	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559556	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559556	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559556	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559556	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559556	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559397	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559397	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559397	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559397	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559397	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559397	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000267996	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000267996	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000267996	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000267996	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000267996	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000267996	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000334895	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000334895	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000334895	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000334895	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000334895	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000334895	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000404484	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000404484	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000404484	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000404484	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000404484	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000404484	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000560959	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000560959	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000560959	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000560959	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000560959	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000560959	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559281	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559281	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559281	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559281	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000559281	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000559281	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000288398		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000317516	ENST00000358278		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000560445		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000403994		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000317516	ENST00000357980		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000559556		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000317516	ENST00000559397		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000317516	ENST00000267996		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000334895		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-3UTR	ENST00000317516	ENST00000404484		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000560959		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000559281		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
5CDS-intron	ENST00000317516	ENST00000317516		ChiTaRS3.1			CN274732	TPM1	chr15	63354807	-	TPM1	chr15	63363447	+
intron-intron	ENST00000518864	ENST00000398590		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000518864	ENST00000295900		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000518864	ENST00000487717		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000518864	ENST00000538065		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000518864	ENST00000484332		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000518864	ENST00000488239		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000398590		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000295900		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000487717		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000538065		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000484332		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000522124	ENST00000488239		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000398590		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000295900		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000487717		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000538065		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000484332		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000517473	ENST00000488239		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000398590		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000295900		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000487717		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000538065		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000484332		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000276467	ENST00000488239		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000398590		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000295900		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000487717		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000538065		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000484332		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-intron	ENST00000520697	ENST00000488239		ChiTaRS3.1			DA057812	SNTG1	chr8	50998421	+	ATXN7	chr3	63911542	-
intron-3CDS	ENST00000357166	ENST00000254043		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-5UTR	ENST00000357166	ENST00000393974		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000357166	ENST00000393981		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000357166	ENST00000393976		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-3CDS	ENST00000371064	ENST00000254043		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-5UTR	ENST00000371064	ENST00000393974		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000371064	ENST00000393981		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000371064	ENST00000393976		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-3CDS	ENST00000491039	ENST00000254043		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-5UTR	ENST00000491039	ENST00000393974		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000491039	ENST00000393981		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000491039	ENST00000393976		ChiTaRS3.1			BF815792	ZDHHC9	chrX	128954288	+	KRT15	chr17	39674822	-
intron-intron	ENST00000546087	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000546087	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000546087	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000538183	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000538183	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000367055	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367055	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000367054	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000367054	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000444946	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000444946	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000337404	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000337404	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000452684	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000452684	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000546087		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000535372	ENST00000538183		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000367055		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000367054		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000444946		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000337404		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000452684		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-intron	ENST00000535372	ENST00000535372		ChiTaRS3.1			AW838142	SOD2	chr6	160101704	+	SOD2	chr6	160100954	+
intron-3UTR	ENST00000295065	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000295065	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000295065	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000295065	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000295065	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000295065	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000379383	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000379383	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000379383	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000379383	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000379383	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000379383	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000404530	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000404530	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000404530	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000404530	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000404530	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000404530	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000490459	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000490459	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000490459	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000490459	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000490459	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000490459	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000426310	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000426310	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000426310	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000426310	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000426310	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000426310	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000407893	ENST00000295065		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000407893	ENST00000379383		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000407893	ENST00000404530		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-5UTR	ENST00000407893	ENST00000490459		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3UTR	ENST00000407893	ENST00000426310		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-intron	ENST00000407893	ENST00000407893		ChiTaRS3.1			BC036262	MEMO1	chr2	32093151	-	MEMO1	chr2	32093191	+
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB138512	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-intron	ENST00000551492	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551492	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000346562	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000341321	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000548645	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000356141	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000357798	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000547068	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000551008	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000551492		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000346562		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000341321		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000548645		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000356141		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000357798		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000547068		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000551008		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-intron	ENST00000550662	ENST00000550662		ChiTaRS3.1			AA525162	NPAS3	chr14	34256010	+	NPAS3	chr14	34255886	-
intron-3UTR	ENST00000448276	ENST00000360319		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000448276	ENST00000422373		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000448276	ENST00000369850		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000448276	ENST00000369856		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000448276	ENST00000344736		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000448276	ENST00000498491		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000323347	ENST00000360319		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000323347	ENST00000422373		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000323347	ENST00000369850		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000323347	ENST00000369856		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000323347	ENST00000344736		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000323347	ENST00000498491		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000225742	ENST00000360319		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000225742	ENST00000422373		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000225742	ENST00000369850		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-3UTR	ENST00000225742	ENST00000369856		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000225742	ENST00000344736		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000225742	ENST00000498491		ChiTaRS3.1			AI983892	SMARCD2	chr17	61909742	+	FLNA	chrX	153577135	+
intron-intron	ENST00000340415	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000340415	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000402449	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000528438	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392615	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392614	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392613	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392612	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000340635		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000360047		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000507116		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000502484		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000546160		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000502575		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000358923		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000503258		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000405755		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000317118		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000392610	ENST00000503947		ChiTaRS3.1			BI019872	RAB37	chr17	72700988	+	PDE4D	chr5	58351301	+
intron-intron	ENST00000547776	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547776	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547776	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547776	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000329257	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000329257	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000329257	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000329257	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547010	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547010	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547010	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547010	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000341752	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000341752	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000341752	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000341752	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549558	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549558	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549558	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549558	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550693	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550693	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550693	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550693	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549025	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549025	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549025	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549025	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549493	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549493	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549493	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000549493	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547446	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547446	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547446	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000547446	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000333732	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000333732	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000333732	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000333732	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546568	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546568	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546568	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546568	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000332712	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000332712	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000332712	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000332712	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546960	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546960	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546960	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000546960	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550833	ENST00000442011		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550833	ENST00000305126		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550833	ENST00000508076		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-intron	ENST00000550833	ENST00000504185		ChiTaRS3.1			BM994942	ANKS1B	chr12	100222733	-	TGFBI	chr5	135385634	-
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			AI073852	COL1A1	chr17	48262054	-	COL1A1	chr17	48262454	-
5CDS-intron	ENST00000343986	ENST00000535741		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000343986	ENST00000510413		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000343986	ENST00000503716		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000343986	ENST00000357115		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000343986	ENST00000507224		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000492356	ENST00000535741		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000492356	ENST00000510413		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000492356	ENST00000503716		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000492356	ENST00000357115		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000492356	ENST00000507224		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000370562	ENST00000535741		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000370562	ENST00000510413		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000370562	ENST00000503716		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000370562	ENST00000357115		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000370562	ENST00000507224		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000450116	ENST00000535741		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000450116	ENST00000510413		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000450116	ENST00000503716		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000450116	ENST00000357115		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000450116	ENST00000507224		ChiTaRS3.1			BP251502	RPS21	chr20	60963573	+	LRBA	chr4	151616197	-
5CDS-intron	ENST00000397933	ENST00000437621		ChiTaRS3.1			BQ356002	U2SURP	chr3	142773901	+	PSMG3-AS1	chr7	1619759	-
5CDS-intron	ENST00000473835	ENST00000437621		ChiTaRS3.1			BQ356002	U2SURP	chr3	142773901	+	PSMG3-AS1	chr7	1619759	-
5CDS-intron	ENST00000493598	ENST00000437621		ChiTaRS3.1			BQ356002	U2SURP	chr3	142773901	+	PSMG3-AS1	chr7	1619759	-
intron-intron	ENST00000549441	ENST00000549441		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000549441	ENST00000395069		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000549441	ENST00000552651		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000395069	ENST00000549441		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000395069	ENST00000395069		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000395069	ENST00000552651		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000552651	ENST00000549441		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000552651	ENST00000395069		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000552651	ENST00000552651		ChiTaRS3.1			BG978182	DNAJC22	chr12	49744946	-	DNAJC22	chr12	49744817	+
intron-intron	ENST00000488299	ENST00000540235		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000488299	ENST00000393930		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000488299	ENST00000393931		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000488299	ENST00000310706		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380843	ENST00000540235		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380843	ENST00000393930		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380843	ENST00000393931		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380843	ENST00000310706		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380851	ENST00000540235		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380851	ENST00000393930		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380851	ENST00000393931		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-intron	ENST00000380851	ENST00000310706		ChiTaRS3.1			BG991562	IDH3B	chr20	2641424	-	JUP	chr17	39740115	+
intron-3UTR	ENST00000225655	ENST00000455662		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-3UTR	ENST00000225655	ENST00000418807		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000225655	ENST00000443872		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-3UTR	ENST00000225655	ENST00000443938		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000225655	ENST00000244204		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000225655	ENST00000428360		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-3UTR	ENST00000574872	ENST00000455662		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-3UTR	ENST00000574872	ENST00000418807		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000574872	ENST00000443872		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-3UTR	ENST00000574872	ENST00000443938		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000574872	ENST00000244204		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
intron-intron	ENST00000574872	ENST00000428360		ChiTaRS3.1			BQ334962	PFN1	chr17	4849137	-	NAGK	chr2	71305764	+
5UTR-intron	ENST00000505103	ENST00000370854		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000393760		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000370846		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000352634		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000353979		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000370842		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000345745		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000505103	ENST00000495735		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000370854		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000393760		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000370846		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000352634		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000353979		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000370842		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000345745		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000510172	ENST00000495735		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000370854		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000393760		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000370846		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000352634		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000353979		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000370842		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000345745		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508110	ENST00000495735		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000370854		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000393760		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000370846		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000352634		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000353979		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000370842		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000345745		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
5UTR-intron	ENST00000508287	ENST00000495735		ChiTaRS3.1			BE897132	F11-AS1	chr4	187421999	-	ZDHHC16	chr10	99212889	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			U19399	BCR	chr22	23632845	+	ABL1	chr9	133727499	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			U19399	BCR	chr22	23632845	+	ABL1	chr9	133727499	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			U19399	BCR	chr22	23632845	+	ABL1	chr9	133727499	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			U19399	BCR	chr22	23632845	+	ABL1	chr9	133727499	+
5CDS-3UTR	ENST00000356577	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000356577	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000356577	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000356577	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000290239	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000290239	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000290239	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000290239	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-3UTR	ENST00000381692	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-3UTR	ENST00000381692	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-intron	ENST00000381692	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-intron	ENST00000381692	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000300278	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000300278	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000300278	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000300278	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000381679	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-3UTR	ENST00000381679	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000381679	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000381679	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-3UTR	ENST00000470533	ENST00000497571		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-3UTR	ENST00000470533	ENST00000542957		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-intron	ENST00000470533	ENST00000173785		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
intron-intron	ENST00000470533	ENST00000469435		ChiTaRS3.1			BE719002	SON	chr21	34922039	+	KLF6	chr10	3821166	-
5CDS-intron	ENST00000372409	ENST00000384994		ChiTaRS3.1			AA534942	PCIF1	chr20	44576352	-	NEAT1	chr11	65192412	-
3UTR-intron	ENST00000479348	ENST00000384994		ChiTaRS3.1			AA534942	PCIF1	chr20	44576352	-	NEAT1	chr11	65192412	-
intron-3CDS	ENST00000297029	ENST00000259605		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000297029	ENST00000353739		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000297029	ENST00000357058		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000297029	ENST00000350199		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000297029	ENST00000377885		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000297029	ENST00000377877		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-5UTR	ENST00000297029	ENST00000491349		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000259605		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000353739		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000357058		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000350199		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000377885		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000519209	ENST00000377877		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-5UTR	ENST00000519209	ENST00000491349		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000259605		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000353739		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000357058		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000350199		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000377885		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000445618	ENST00000377877		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-5UTR	ENST00000445618	ENST00000491349		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000259605		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000353739		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000357058		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000350199		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000377885		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-3CDS	ENST00000473722	ENST00000377877		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-5UTR	ENST00000473722	ENST00000491349		ChiTaRS3.1			BF997802	SCIN	chr7	12631800	-	RNF38	chr9	36356394	-
intron-intron	ENST00000322723	ENST00000428783		ChiTaRS3.1			BF930342	NCL	chr2	232320847	+	EEF1DP3	chr13	32525027	+
intron-intron	ENST00000410024	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000410024	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000410024	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000410024	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000410024	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000410024	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409295	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409295	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409295	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409295	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409295	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409295	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409091	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409091	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-intron	ENST00000409091	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409091	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409091	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3UTR	ENST00000409091	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000350033	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000350033	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000350033	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000350033	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000350033	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000350033	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000410017	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000410017	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000410017	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000410017	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000410017	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000410017	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000373608	ENST00000410024		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000373608	ENST00000409295		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-intron	ENST00000373608	ENST00000409091		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000373608	ENST00000350033		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000373608	ENST00000410017		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
3UTR-3UTR	ENST00000373608	ENST00000373608		ChiTaRS3.1			AI631312	COPS7B	chr2	232673329	-	COPS7B	chr2	232673179	+
intron-3CDS	ENST00000227471	ENST00000414242		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
intron-3CDS	ENST00000227471	ENST00000361479		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
intron-intron	ENST00000227471	ENST00000496525		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
intron-3CDS	ENST00000530331	ENST00000414242		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
intron-3CDS	ENST00000530331	ENST00000361479		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
intron-intron	ENST00000530331	ENST00000496525		ChiTaRS3.1			BF920672	UNC93B1	chr11	67764221	+	MPHOSPH8	chr13	20208027	-
3UTR-3UTR	ENST00000338844	ENST00000336967		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391771		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391770		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391769		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000338844	ENST00000391768		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000336967		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391771		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391770		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391769		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
3UTR-3UTR	ENST00000461509	ENST00000391768		ChiTaRS3.1			BF848002	TPSAB1	chr16	1292338	-	MYADM	chr19	54377830	-
intron-intron	ENST00000282111	ENST00000282111		ChiTaRS3.1			BF380542	TCF7L1	chr2	85454258	-	TCF7L1	chr2	85454170	+
intron-intron	ENST00000282111	ENST00000494519		ChiTaRS3.1			BF380542	TCF7L1	chr2	85454258	-	TCF7L1	chr2	85454170	+
intron-intron	ENST00000494519	ENST00000282111		ChiTaRS3.1			BF380542	TCF7L1	chr2	85454258	-	TCF7L1	chr2	85454170	+
intron-intron	ENST00000494519	ENST00000494519		ChiTaRS3.1			BF380542	TCF7L1	chr2	85454258	-	TCF7L1	chr2	85454170	+
intron-intron	ENST00000437621	ENST00000437621		ChiTaRS3.1			AI908702	PSMG3-AS1	chr7	1613376	+	PSMG3-AS1	chr7	1613068	+
In-frame	ENST00000306177	ENST00000306177		ChiTaRS3.1			CA502852	USP42	chr7	6194545	-	USP42	chr7	6194727	+
3UTR-intron	ENST00000340857	ENST00000342228		ChiTaRS3.1			BF748532	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520262		ChiTaRS3.1			BF748532	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520179		ChiTaRS3.1			BF748532	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000523340		ChiTaRS3.1			BF748532	H1F0	chr22	38202211	+	SLC20A2	chr8	42318645	-
intron-intron	ENST00000519807	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519807	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519807	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519807	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000009589	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000009589	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000009589	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000009589	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000524349	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000524349	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000524349	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000524349	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520490	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520490	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520490	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520490	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520627	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520627	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520627	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000520627	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000521262	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000521262	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000521262	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000521262	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000523936	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000523936	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000523936	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000523936	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519606	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519606	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519606	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000519606	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000518875	ENST00000393701		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000518875	ENST00000568461		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000518875	ENST00000288040		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-intron	ENST00000518875	ENST00000449317		ChiTaRS3.1			BF081982	RPS20	chr8	56985763	+	CLEC18A	chr16	70194360	+
intron-3CDS	ENST00000272203	ENST00000396402		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000272203	ENST00000260433		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000272203	ENST00000396404		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000272203	ENST00000559878		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000272203	ENST00000405913		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000272203	ENST00000557858		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000272203	ENST00000492852		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000414478	ENST00000396402		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000414478	ENST00000260433		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000414478	ENST00000396404		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000414478	ENST00000559878		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000414478	ENST00000405913		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000414478	ENST00000557858		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000414478	ENST00000492852		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000485632	ENST00000396402		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000485632	ENST00000260433		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000485632	ENST00000396404		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000485632	ENST00000559878		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000485632	ENST00000405913		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000485632	ENST00000557858		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-intron	ENST00000485632	ENST00000492852		ChiTaRS3.1			BI053792	PLEKHA6	chr1	204240881	+	CYP19A1	chr15	51504694	-
intron-3CDS	ENST00000407559	ENST00000216181		ChiTaRS3.1			BE927852	WDR60	chr7	158659941	-	MYH9	chr22	36710302	-
intron-intron	ENST00000407559	ENST00000475726		ChiTaRS3.1			BE927852	WDR60	chr7	158659941	-	MYH9	chr22	36710302	-
intron-intron	ENST00000407559	ENST00000401701		ChiTaRS3.1			BE927852	WDR60	chr7	158659941	-	MYH9	chr22	36710302	-
intron-intron	ENST00000583129	ENST00000409262		ChiTaRS3.1			CD251462	MIR548O2	chr8	29931533	-	TET3	chr2	74323657	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266519	EWSR1	chr22	29683696	+	FLI1	chr11	128649564	+
intron-intron	ENST00000357421	ENST00000357421		ChiTaRS3.1			AI272812	SLC25A53	chrX	103367145	+	SLC25A53	chrX	103367565	-
intron-intron	ENST00000357421	ENST00000467290		ChiTaRS3.1			AI272812	SLC25A53	chrX	103367145	+	SLC25A53	chrX	103367565	-
intron-intron	ENST00000467290	ENST00000357421		ChiTaRS3.1			AI272812	SLC25A53	chrX	103367145	+	SLC25A53	chrX	103367565	-
intron-intron	ENST00000467290	ENST00000467290		ChiTaRS3.1			AI272812	SLC25A53	chrX	103367145	+	SLC25A53	chrX	103367565	-
intron-intron	ENST00000260128	ENST00000342435		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000260128	ENST00000448205		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000260128	ENST00000487389		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000260128	ENST00000448787		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000260128	ENST00000484560		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000458141	ENST00000342435		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000458141	ENST00000448205		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000458141	ENST00000487389		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000458141	ENST00000448787		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000458141	ENST00000484560		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000402687	ENST00000342435		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000402687	ENST00000448205		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000402687	ENST00000487389		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000402687	ENST00000448787		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000402687	ENST00000484560		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000419716	ENST00000342435		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000419716	ENST00000448205		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000419716	ENST00000487389		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000419716	ENST00000448787		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000419716	ENST00000484560		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000521946	ENST00000342435		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000521946	ENST00000448205		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000521946	ENST00000487389		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000521946	ENST00000448787		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000521946	ENST00000484560		ChiTaRS3.1			AW934802	SULF1	chr8	70483724	+	PLSCR1	chr3	146248391	-
intron-intron	ENST00000422163	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000422163	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000422163	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000491100	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000491100	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000491100	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000313601	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000313601	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000313601	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000536647	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000536647	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000536647	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000440628	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000440628	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000440628	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000451956	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000451956	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000451956	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000266027	ENST00000407073		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000266027	ENST00000478804		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-intron	ENST00000266027	ENST00000404807		ChiTaRS3.1			BM684932	GNAI2	chr3	50268507	-	MBD5	chr2	149024645	+
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BF911462	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000541110	ENST00000281938		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000541110	ENST00000542496		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-3UTR	ENST00000372917	ENST00000281938		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000372917	ENST00000542496		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-3UTR	ENST00000372922	ENST00000281938		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000372922	ENST00000542496		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-3UTR	ENST00000340840	ENST00000281938		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000340840	ENST00000542496		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-3UTR	ENST00000354325	ENST00000281938		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000354325	ENST00000542496		ChiTaRS3.1			BF354872	TRERF1	chr6	42387278	-	HSPB8	chr12	119632215	-
intron-intron	ENST00000553221	ENST00000407479		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-5UTR	ENST00000553221	ENST00000246949		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000553221	ENST00000414110		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000553221	ENST00000575152		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000407479		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-5UTR	ENST00000257910	ENST00000246949		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000414110		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000257910	ENST00000575152		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000407479		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-5UTR	ENST00000547992	ENST00000246949		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000414110		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
3UTR-intron	ENST00000547992	ENST00000575152		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000407479		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-5UTR	ENST00000547472	ENST00000246949		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000414110		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000547472	ENST00000575152		ChiTaRS3.1			AA971692	TSPAN31	chr12	58141796	-	DNASE1	chr16	3703530	-
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000448637	ENST00000312675		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000448637	ENST00000543006		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000312675	ENST00000312675		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000312675	ENST00000543006		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000543006	ENST00000312675		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000543006	ENST00000543006		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000471917	ENST00000312675		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000471917	ENST00000543006		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			AA502492	LPP	chr3	188403616	+	LPP	chr3	188403327	-
intron-intron	ENST00000356401	ENST00000407228		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000356401	ENST00000219746		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000449376	ENST00000407228		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000449376	ENST00000219746		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000490095	ENST00000407228		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000490095	ENST00000219746		ChiTaRS3.1			AI078332	ARIH2	chr3	48971240	-	TOX3	chr16	52517747	+
intron-intron	ENST00000295087	ENST00000370859		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000295087	ENST00000370855		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000295087	ENST00000535611		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000295087	ENST00000469525		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000428992	ENST00000370859		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000428992	ENST00000370855		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000428992	ENST00000535611		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000428992	ENST00000469525		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000487723	ENST00000370859		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000487723	ENST00000370855		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000487723	ENST00000535611		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000487723	ENST00000469525		ChiTaRS3.1			AW772042	ARL5A	chr2	152659274	+	SLC44A5	chr1	75686298	-
intron-intron	ENST00000560302	ENST00000265239		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000560302	ENST00000455191		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000560302	ENST00000453254		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000560302	ENST00000480302		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000394518	ENST00000265239		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000394518	ENST00000455191		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000394518	ENST00000453254		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000394518	ENST00000480302		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000361243	ENST00000265239		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000361243	ENST00000455191		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000361243	ENST00000453254		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
5CDS-intron	ENST00000361243	ENST00000480302		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
3UTR-intron	ENST00000560579	ENST00000265239		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
3UTR-intron	ENST00000560579	ENST00000455191		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
3UTR-intron	ENST00000560579	ENST00000453254		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
3UTR-intron	ENST00000560579	ENST00000480302		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000394510	ENST00000265239		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000394510	ENST00000455191		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000394510	ENST00000453254		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000394510	ENST00000480302		ChiTaRS3.1			BF852302	AKAP13	chr15	86198989	-	IQCG	chr3	197678052	+
intron-intron	ENST00000505931	ENST00000505931		ChiTaRS3.1			AW404332	C5orf51	chr5	41917512	+	C5orf51	chr5	41912302	-
intron-intron	ENST00000505931	ENST00000381647		ChiTaRS3.1			AW404332	C5orf51	chr5	41917512	+	C5orf51	chr5	41912302	-
3UTR-intron	ENST00000381647	ENST00000505931		ChiTaRS3.1			AW404332	C5orf51	chr5	41917512	+	C5orf51	chr5	41912302	-
3UTR-intron	ENST00000381647	ENST00000381647		ChiTaRS3.1			AW404332	C5orf51	chr5	41917512	+	C5orf51	chr5	41912302	-
intron-3CDS	ENST00000378165	ENST00000001008		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-intron	ENST00000378165	ENST00000540260		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-3CDS	ENST00000378150	ENST00000001008		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-intron	ENST00000378150	ENST00000540260		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-3CDS	ENST00000535341	ENST00000001008		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-intron	ENST00000535341	ENST00000540260		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-3CDS	ENST00000466201	ENST00000001008		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-intron	ENST00000466201	ENST00000540260		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-3CDS	ENST00000540259	ENST00000001008		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-intron	ENST00000540259	ENST00000540260		ChiTaRS3.1			BI004482	NMT2	chr10	15175093	-	FKBP4	chr12	2907895	+
intron-5UTR	ENST00000505350	ENST00000474820		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
intron-5UTR	ENST00000505350	ENST00000348849		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
intron-5UTR	ENST00000505350	ENST00000409075		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
intron-5UTR	ENST00000505350	ENST00000409289		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
intron-5UTR	ENST00000505350	ENST00000392753		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
intron-5UTR	ENST00000505350	ENST00000409972		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000474820		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000348849		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000409075		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000409289		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000392753		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000457016	ENST00000409972		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000474820		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000348849		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000409075		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000409289		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000392753		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000257430	ENST00000409972		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000474820		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000348849		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000409075		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000409289		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000392753		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
5CDS-5UTR	ENST00000508376	ENST00000409972		ChiTaRS3.1			AA406272	APC	chr5	112178709	-	RBMS1	chr2	161223859	+
3UTR-3CDS	ENST00000535601	ENST00000535601		ChiTaRS3.1			AW364522	HTATSF1	chrX	135594314	+	HTATSF1	chrX	135593574	+
3UTR-3CDS	ENST00000535601	ENST00000218364		ChiTaRS3.1			AW364522	HTATSF1	chrX	135594314	+	HTATSF1	chrX	135593574	+
3UTR-3CDS	ENST00000218364	ENST00000535601		ChiTaRS3.1			AW364522	HTATSF1	chrX	135594314	+	HTATSF1	chrX	135593574	+
3UTR-3CDS	ENST00000218364	ENST00000218364		ChiTaRS3.1			AW364522	HTATSF1	chrX	135594314	+	HTATSF1	chrX	135593574	+
intron-3CDS	ENST00000481195	ENST00000481195		ChiTaRS3.1			CD722562	PPP2CA	chr5	133533038	+	PPP2CA	chr5	133534865	-
intron-intron	ENST00000481195	ENST00000231504		ChiTaRS3.1			CD722562	PPP2CA	chr5	133533038	+	PPP2CA	chr5	133534865	-
intron-3CDS	ENST00000231504	ENST00000481195		ChiTaRS3.1			CD722562	PPP2CA	chr5	133533038	+	PPP2CA	chr5	133534865	-
intron-intron	ENST00000231504	ENST00000231504		ChiTaRS3.1			CD722562	PPP2CA	chr5	133533038	+	PPP2CA	chr5	133534865	-
intron-intron	ENST00000286827	ENST00000286827		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000286827	ENST00000541036		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000286827	ENST00000469412		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000541036	ENST00000286827		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000541036	ENST00000541036		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000541036	ENST00000469412		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000469412	ENST00000286827		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000469412	ENST00000541036		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
intron-intron	ENST00000469412	ENST00000469412		ChiTaRS3.1			BC128062	TIAM1	chr21	32709910	+	TIAM1	chr21	32708135	+
3UTR-3UTR	ENST00000398532	ENST00000512215		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-3UTR	ENST00000398532	ENST00000394854		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-3UTR	ENST00000398532	ENST00000323055		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-3UTR	ENST00000398532	ENST00000394853		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-3UTR	ENST00000398532	ENST00000507176		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-intron	ENST00000398532	ENST00000523694		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
3UTR-intron	ENST00000398532	ENST00000510292		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000577454	ENST00000512215		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000577454	ENST00000394854		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000577454	ENST00000323055		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000577454	ENST00000394853		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000577454	ENST00000507176		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000577454	ENST00000523694		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000577454	ENST00000510292		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000578648	ENST00000512215		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000578648	ENST00000394854		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000578648	ENST00000323055		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000578648	ENST00000394853		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000578648	ENST00000507176		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000578648	ENST00000523694		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000578648	ENST00000510292		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000579565	ENST00000512215		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000579565	ENST00000394854		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000579565	ENST00000323055		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000579565	ENST00000394853		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3UTR	ENST00000579565	ENST00000507176		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000579565	ENST00000523694		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-intron	ENST00000579565	ENST00000510292		ChiTaRS3.1			BE896062	MSL1	chr17	38291327	+	PPP3CA	chr4	101946829	-
intron-3CDS	ENST00000296511	ENST00000296511		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000296511	ENST00000501272		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000296511	ENST00000515017		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-intron	ENST00000296511	ENST00000509016		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000501272	ENST00000296511		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000501272	ENST00000501272		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000501272	ENST00000515017		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-intron	ENST00000501272	ENST00000509016		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000515017	ENST00000296511		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000515017	ENST00000501272		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000515017	ENST00000515017		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-intron	ENST00000515017	ENST00000509016		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000509016	ENST00000296511		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000509016	ENST00000501272		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000509016	ENST00000515017		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-intron	ENST00000509016	ENST00000509016		ChiTaRS3.1			AI923732	ANXA5	chr4	122589552	+	ANXA5	chr4	122589648	-
intron-3CDS	ENST00000360655	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000396085	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000349880	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000396087	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000527559	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000540292	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000533917	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000311043	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3CDS	ENST00000534229	ENST00000361249		ChiTaRS3.1			BG567002	NAV2	chr11	19990454	+	C8A	chr1	57383280	+
intron-3UTR	ENST00000373670	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000373670	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000373670	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000373670	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000373670	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000357244	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000357244	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000357244	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000357244	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000357244	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000423239	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000423239	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000423239	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000423239	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000423239	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000373665	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000373665	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000373665	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000373665	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000373665	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000335387	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000335387	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000335387	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000335387	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000335387	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000478216	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000478216	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000478216	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000478216	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000478216	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000471874	ENST00000373803		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000471874	ENST00000359675		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-3UTR	ENST00000471874	ENST00000349004		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000471874	ENST00000373773		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
intron-intron	ENST00000471874	ENST00000540765		ChiTaRS3.1			AL121222	RC3H2	chr9	125616885	+	NDRG3	chr20	35280331	-
In-frame	ENST00000441493	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000441493	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
5CDS-intron	ENST00000441493	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
Frame-shit	ENST00000400561	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
5CDS-intron	ENST00000400561	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
In-frame	ENST00000444520	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
5CDS-intron	ENST00000444520	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000414725	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000414725	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000383094	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000383094	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000207726	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000207726	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000429452	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000429452	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000585038	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000585038	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000441493		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000400561		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000444520		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000414725		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000383094		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000207726		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000429452		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-3CDS	ENST00000580469	ENST00000585038		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000580469	ENST00000580469		ChiTaRS3.1			BE141862	MICAL3	chr22	18324588	-	MICAL3	chr22	18374369	+
intron-intron	ENST00000336078	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000336078	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000336078	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000336078	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000336078	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000336078	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591083	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000589288	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591230	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000591808	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000336078		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000591083		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000589288		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000591230		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000591808		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
intron-intron	ENST00000588956	ENST00000588956		ChiTaRS3.1			AA744412	ZNF532	chr18	56570219	+	ZNF532	chr18	56570109	-
5CDS-intron	ENST00000382533	ENST00000339859		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000408019		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000428547		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000394811		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000497106		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000422491		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5CDS-intron	ENST00000382533	ENST00000319786		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000339859		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000408019		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000428547		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000394811		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000497106		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000422491		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
5UTR-intron	ENST00000607003	ENST00000319786		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000339859		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000408019		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000428547		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000394811		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000497106		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000422491		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000485646	ENST00000319786		ChiTaRS3.1			BI041482	SAP18	chr13	21714733	-	USP54	chr10	75310631	-
intron-intron	ENST00000376395	ENST00000542955		ChiTaRS3.1			BG272382	UBQLN1	chr9	86275031	+	IGFBP4	chr17	38613749	+
intron-3UTR	ENST00000376395	ENST00000269593		ChiTaRS3.1			BG272382	UBQLN1	chr9	86275031	+	IGFBP4	chr17	38613749	+
intron-intron	ENST00000257468	ENST00000542955		ChiTaRS3.1			BG272382	UBQLN1	chr9	86275031	+	IGFBP4	chr17	38613749	+
intron-3UTR	ENST00000257468	ENST00000269593		ChiTaRS3.1			BG272382	UBQLN1	chr9	86275031	+	IGFBP4	chr17	38613749	+
intron-intron	ENST00000335783	ENST00000335783		ChiTaRS3.1			CF137902	CENPQ	chr6	49437614	-	CENPQ	chr6	49436890	+
intron-3UTR	ENST00000339697	ENST00000339697		ChiTaRS3.1			BF376472	SERINC1	chr6	122765086	+	SERINC1	chr6	122765020	-
intron-intron	ENST00000366730	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366730	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366730	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000391865	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000391865	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366726	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366726	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000312726	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000312726	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366728	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366728	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366723	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366723	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366722	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366722	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366721	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366721	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366718	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366718	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-3UTR	ENST00000470040	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
3UTR-intron	ENST00000470040	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366730		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000391865		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000312726		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366728		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366723		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366722		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366721		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366718		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000366716	ENST00000470040		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-intron	ENST00000366716	ENST00000366716		ChiTaRS3.1			BF987582	GUK1	chr1	228333590	+	GUK1	chr1	228332908	+
intron-3UTR	ENST00000361157	ENST00000339697		ChiTaRS3.1			BF576882	IFI6	chr1	27993894	-	SERINC1	chr6	122765252	-
intron-3UTR	ENST00000339145	ENST00000339697		ChiTaRS3.1			BF576882	IFI6	chr1	27993894	-	SERINC1	chr6	122765252	-
intron-3UTR	ENST00000362020	ENST00000339697		ChiTaRS3.1			BF576882	IFI6	chr1	27993894	-	SERINC1	chr6	122765252	-
intron-intron	ENST00000418088	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000418088	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000418088	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000418088	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000418088	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000452079	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000452079	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000452079	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000452079	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000452079	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000419973	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000419973	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000419973	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000419973	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000419973	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000423764	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000423764	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000423764	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000423764	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000423764	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000587071	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000587071	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000587071	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000587071	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000587071	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000608600	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000608600	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000608600	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000608600	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000608600	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000544565	ENST00000344663		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000544565	ENST00000591806		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000544565	ENST00000311401		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000544565	ENST00000415183		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000544565	ENST00000591453		ChiTaRS3.1			AI693682	TP73-AS1	chr1	3654172	+	MUM1	chr19	1364841	-
intron-intron	ENST00000368904	ENST00000320580		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000368904	ENST00000529757		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000368904	ENST00000524815		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000392790	ENST00000320580		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000392790	ENST00000529757		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000392790	ENST00000524815		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000545804	ENST00000320580		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000545804	ENST00000529757		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
intron-intron	ENST00000545804	ENST00000524815		ChiTaRS3.1			BF851732	CUZD1	chr10	124613051	+	PACS1	chr11	65885385	+
3UTR-3CDS	ENST00000322611	ENST00000322611		ChiTaRS3.1			BQ772162	BASP1	chr5	17276251	-	BASP1	chr5	17275966	+
intron-3UTR	ENST00000354886	ENST00000358344		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000506339		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000355836		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000514633		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000515193		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000506259		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000354886	ENST00000504898		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000358344		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000506339		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000355836		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000514633		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000515193		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000506259		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000267488	ENST00000504898		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000358344		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000506339		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000355836		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000514633		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000515193		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000506259		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000456840	ENST00000504898		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000358344		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000506339		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000355836		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000514633		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000515193		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000506259		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-3UTR	ENST00000554304	ENST00000504898		ChiTaRS3.1			BQ318532	SLC38A6	chr14	61465618	-	HNRNPAB	chr5	177637718	-
intron-5UTR	ENST00000271843	ENST00000271843		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000271843	ENST00000356648		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000271843	ENST00000368589		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000271843	ENST00000471173		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000356648	ENST00000271843		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000356648	ENST00000356648		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000356648	ENST00000368589		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000356648	ENST00000471173		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000368589	ENST00000271843		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000368589	ENST00000356648		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000368589	ENST00000368589		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000368589	ENST00000471173		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000471173	ENST00000271843		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000471173	ENST00000356648		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000471173	ENST00000368589		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-5UTR	ENST00000471173	ENST00000471173		ChiTaRS3.1			BE294812	JTB	chr1	153949862	+	JTB	chr1	153949816	-
intron-3UTR	ENST00000308624	ENST00000370238		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
intron-intron	ENST00000308624	ENST00000467772		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
intron-3UTR	ENST00000407292	ENST00000370238		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
intron-intron	ENST00000407292	ENST00000467772		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
intron-3UTR	ENST00000467759	ENST00000370238		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
intron-intron	ENST00000467759	ENST00000467772		ChiTaRS3.1			AA451832	SNTG2	chr2	1063989	-	GCLM	chr1	94353587	-
5CDS-intron	ENST00000409155	ENST00000565858		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000409155	ENST00000473183		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000277315	ENST00000565858		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000277315	ENST00000473183		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-intron	ENST00000482001	ENST00000565858		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-intron	ENST00000482001	ENST00000473183		ChiTaRS3.1			BC009172	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-3CDS	ENST00000193403	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000193403	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000193403	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000193403	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000193403	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000193403	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000394419	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000394419	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000394419	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000394419	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000394419	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000394419	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000438964	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000438964	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000438964	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000438964	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000438964	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000438964	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000376839	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000376839	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000376839	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000376839	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000376839	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000376839	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000538545	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000538545	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000538545	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000538545	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000538545	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000538545	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000554508	ENST00000193403		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000554508	ENST00000394419		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000554508	ENST00000438964		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000554508	ENST00000376839		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-3CDS	ENST00000554508	ENST00000538545		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
intron-intron	ENST00000554508	ENST00000554508		ChiTaRS3.1			BM555422	ACTN1	chr14	69341703	+	ACTN1	chr14	69346805	-
Frame-shit	ENST00000404984	ENST00000344034		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000404984	ENST00000350803		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000402050	ENST00000344034		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000402050	ENST00000350803		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000438376	ENST00000344034		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000438376	ENST00000350803		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000325979	ENST00000344034		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
Frame-shit	ENST00000325979	ENST00000350803		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
intron-3CDS	ENST00000497572	ENST00000344034		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
intron-3CDS	ENST00000497572	ENST00000350803		ChiTaRS3.1			BG958222	IQCE	chr7	2629582	-	PPM1G	chr2	27606380	-
intron-intron	ENST00000363840	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000365524	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000364822	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000363859	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000385578	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000363146	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
intron-intron	ENST00000364084	ENST00000409170		ChiTaRS3.1			AV757482	GAS5	chr1	173834509	-	RPL36A-HNRNPH2	chrX	100656487	-
3UTR-intron	ENST00000336216	ENST00000253363		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000336216	ENST00000361162		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000336216	ENST00000528062		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000336216	ENST00000407261		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000336216	ENST00000397370		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000336216	ENST00000463098		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000253363		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000361162		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000528062		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000407261		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000397370		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
3UTR-intron	ENST00000381714	ENST00000463098		ChiTaRS3.1			BU689572	HMG20A	chr15	77777822	-	RBM39	chr20	34297701	+
intron-3UTR	ENST00000389341	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000389341	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000389341	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000342301	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000342301	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000342301	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000533720	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000533720	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000533720	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000526816	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000526816	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000526816	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000529067	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000529067	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529067	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000560558	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000560558	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560558	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000560398	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000560398	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000560398	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000529952	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000529952	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000529952	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000524801	ENST00000389341		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-3UTR	ENST00000524801	ENST00000342301		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000533720		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000526816		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000529067		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000560558		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000560398		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000529952		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000524801	ENST00000524801		ChiTaRS3.1			AI657122	POU2F2	chr19	42594457	+	POU2F2	chr19	42593705	+
intron-intron	ENST00000407673	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000407673	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000407673	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000407673	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000407673	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000401624	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000401624	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000401624	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000401624	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000401624	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000404898	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000404898	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000404898	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000404898	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000404898	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000400164	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000400164	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000400164	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000400164	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000400164	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000336649	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000336649	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000336649	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000336649	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000336649	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000402142	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000402142	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000402142	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000402142	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
3UTR-intron	ENST00000402142	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000471970	ENST00000457913		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000471970	ENST00000277225		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000471970	ENST00000441147		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000471970	ENST00000542028		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000471970	ENST00000497489		ChiTaRS3.1			BG995152	CACNA1I	chr22	40085006	-	ZNF462	chr9	109677900	+
intron-intron	ENST00000380934	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380934	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380934	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380934	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380959	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380959	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380959	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380959	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380953	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380953	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380953	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380953	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397575	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397575	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397575	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397575	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397581	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397581	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397581	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397581	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397579	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397579	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397579	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000397579	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000543693	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000543693	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000543693	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000543693	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380924	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380924	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380924	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380924	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380921	ENST00000436443		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380921	ENST00000342788		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380921	ENST00000402597		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-intron	ENST00000380921	ENST00000484474		ChiTaRS3.1			BF833532	NFIB	chr9	14106569	-	ERBB4	chr2	212907817	-
intron-3UTR	ENST00000591142	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591142	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591142	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591142	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591142	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591142	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591142	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591601	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591601	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591601	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591601	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591601	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591601	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591601	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000309340	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000309340	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000309340	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000309340	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000309340	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000309340	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000309340	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000250896	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000250896	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000250896	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000250896	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000250896	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000250896	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000250896	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000541165	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000541165	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000541165	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000541165	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000541165	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000541165	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000541165	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591588	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591588	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591588	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000591588	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591588	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591588	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000591588	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000588014	ENST00000591142		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000588014	ENST00000591601		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000588014	ENST00000309340		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-3UTR	ENST00000588014	ENST00000250896		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000588014	ENST00000541165		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000588014	ENST00000591588		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000588014	ENST00000588014		ChiTaRS3.1			BU674802	MKNK2	chr19	2037548	+	MKNK2	chr19	2037605	-
intron-intron	ENST00000317133	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000317133	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000317133	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000317133	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000317133	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375741	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375741	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375741	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375741	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375741	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375739	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375739	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375739	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375739	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375739	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000370623	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000370623	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000370623	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000370623	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000370623	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000544132	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000544132	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000544132	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000544132	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000544132	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000218789	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000218789	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000218789	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000218789	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000218789	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000375736	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000375736	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000375736	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000375736	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000375736	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000426073	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000426073	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000426073	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000426073	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
3UTR-intron	ENST00000426073	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375737	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375737	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375737	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375737	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375737	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375723	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375723	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375723	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375723	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000375723	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000478679	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000478679	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000478679	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000478679	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000478679	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000483189	ENST00000503191		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000483189	ENST00000382020		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000483189	ENST00000506802		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000483189	ENST00000509380		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000483189	ENST00000503731		ChiTaRS3.1			BF990912	ARHGEF7	chr13	111955946	-	TUSC3	chr8	15397987	+
intron-intron	ENST00000554914	ENST00000554914		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000554914	ENST00000553390		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000554914	ENST00000304501		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000553390	ENST00000554914		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000553390	ENST00000553390		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000553390	ENST00000304501		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000304501	ENST00000554914		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000304501	ENST00000553390		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000304501	ENST00000304501		ChiTaRS3.1			AA481892	SOX7	chr8	10623083	+	SOX7	chr8	10623014	-
intron-intron	ENST00000541687	ENST00000541687		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000541687	ENST00000321027		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000541687	ENST00000409857		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000541687	ENST00000470503		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000321027	ENST00000541687		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000321027	ENST00000321027		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000321027	ENST00000409857		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000321027	ENST00000470503		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000409857	ENST00000541687		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000409857	ENST00000321027		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000409857	ENST00000409857		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000409857	ENST00000470503		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000470503	ENST00000541687		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000470503	ENST00000321027		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000470503	ENST00000409857		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000470503	ENST00000470503		ChiTaRS3.1			BF762662	GCFC2	chr2	75916193	-	GCFC2	chr2	75917727	+
intron-intron	ENST00000304593	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000304593	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000476924	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000353339	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000354503	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409565	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000409616	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000337110	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000524634	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000349901	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000304593		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000476924		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000353339		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000354503		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000409565		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000409616		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000337110		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000524634		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000349901		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
intron-intron	ENST00000392059	ENST00000392059		ChiTaRS3.1			AA668862	MFF	chr2	228213542	-	MFF	chr2	228213930	-
Frame-shit	ENST00000159111	ENST00000159111		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000159111	ENST00000381759		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000159111	ENST00000536461		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000159111	ENST00000592175		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-3CDS	ENST00000381759	ENST00000159111		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000381759	ENST00000381759		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000381759	ENST00000536461		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000381759	ENST00000592175		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
Frame-shit	ENST00000536461	ENST00000159111		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000536461	ENST00000381759		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000536461	ENST00000536461		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
5CDS-intron	ENST00000536461	ENST00000592175		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-3CDS	ENST00000592175	ENST00000159111		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000592175	ENST00000381759		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000592175	ENST00000536461		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000592175	ENST00000592175		ChiTaRS3.1			AL133622	KDM4B	chr19	5131096	-	KDM4B	chr19	5131229	+
intron-intron	ENST00000425427	ENST00000425427		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000425427	ENST00000297107		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000425427	ENST00000377661		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000425427	ENST00000519544		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000425427	ENST00000377657		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000297107	ENST00000425427		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-3UTR	ENST00000297107	ENST00000297107		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000297107	ENST00000377661		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000297107	ENST00000519544		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-3UTR	ENST00000297107	ENST00000377657		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000377661	ENST00000425427		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000377661	ENST00000297107		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000377661	ENST00000377661		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000377661	ENST00000519544		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000377661	ENST00000377657		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000519544	ENST00000425427		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000519544	ENST00000297107		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000519544	ENST00000377661		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000519544	ENST00000519544		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-3UTR	ENST00000519544	ENST00000377657		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000377657	ENST00000425427		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-3UTR	ENST00000377657	ENST00000297107		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000377657	ENST00000377661		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-intron	ENST00000377657	ENST00000519544		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
3UTR-3UTR	ENST00000377657	ENST00000377657		ChiTaRS3.1			BF155072	GALNT10	chr5	153800494	+	GALNT10	chr5	153799900	+
intron-intron	ENST00000465812	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000465812	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000465812	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000465812	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000465812	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000465812	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-intron	ENST00000409052	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000409052	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000409052	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000409052	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000409052	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000409052	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-intron	ENST00000361779	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000361779	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000361779	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000361779	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000361779	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000361779	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-intron	ENST00000259206	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000259206	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000259206	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000259206	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000259206	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000259206	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-intron	ENST00000354115	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000354115	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000354115	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000354115	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000354115	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
3UTR-3UTR	ENST00000354115	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-intron	ENST00000409930	ENST00000465812		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000409930	ENST00000409052		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000409930	ENST00000361779		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000409930	ENST00000259206		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000409930	ENST00000354115		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3UTR	ENST00000409930	ENST00000409930		ChiTaRS3.1			BM968852	IL1RN	chr2	113890782	-	IL1RN	chr2	113890561	+
intron-3CDS	ENST00000225525	ENST00000403263		ChiTaRS3.1			BI004512	TAX1BP3	chr17	3566952	-	INO80D	chr2	206921054	-
3UTR-3UTR	ENST00000377060	ENST00000377060		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
3UTR-3UTR	ENST00000377060	ENST00000305510		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
3UTR-intron	ENST00000377060	ENST00000480035		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
3UTR-3UTR	ENST00000305510	ENST00000377060		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
3UTR-3UTR	ENST00000305510	ENST00000305510		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
3UTR-intron	ENST00000305510	ENST00000480035		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
intron-3UTR	ENST00000480035	ENST00000377060		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
intron-3UTR	ENST00000480035	ENST00000305510		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
intron-intron	ENST00000480035	ENST00000480035		ChiTaRS3.1			AA229402	CNNM3	chr2	97499259	+	CNNM3	chr2	97499141	-
intron-intron	ENST00000418107	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418107	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000416244	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000413617	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000395312	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552299	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548611	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548183	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000418759	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000424822	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000447454	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000440078	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000548290	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547478	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000551481	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000456428	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000450897	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428864	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000383231	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549152	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000552389	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000546855	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000452407	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000428420	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000550052	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000549556	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000547313	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000439344	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000418107		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000416244		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000413617		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000395312		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000552299		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000548611		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000548183		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000418759		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000424822		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000447454		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000440078		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000548290		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000547478		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000551481		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000456428		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000450897		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000428864		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000383231		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000549152		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000552389		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000546855		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000452407		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000428420		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000550052		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000549556		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000547313		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000439344		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-intron	ENST00000412948	ENST00000412948		ChiTaRS3.1			BF364332	HLA-DMB	chr6	4361931	+	HLA-DMB	chr6	4335525	-
intron-3UTR	ENST00000373365	ENST00000373365		ChiTaRS3.1			AW974402	GLO1	chr6	38644087	-	GLO1	chr6	38644153	+
intron-5UTR	ENST00000373365	ENST00000470973		ChiTaRS3.1			AW974402	GLO1	chr6	38644087	-	GLO1	chr6	38644153	+
intron-3UTR	ENST00000470973	ENST00000373365		ChiTaRS3.1			AW974402	GLO1	chr6	38644087	-	GLO1	chr6	38644153	+
intron-5UTR	ENST00000470973	ENST00000470973		ChiTaRS3.1			AW974402	GLO1	chr6	38644087	-	GLO1	chr6	38644153	+
intron-intron	ENST00000327367	ENST00000327367		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000327367	ENST00000559092		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000327367	ENST00000540846		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000327367	ENST00000439724		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000327367	ENST00000537194		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000559092	ENST00000327367		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000559092	ENST00000559092		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000559092	ENST00000540846		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000559092	ENST00000439724		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000559092	ENST00000537194		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000540846	ENST00000327367		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000540846	ENST00000559092		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000540846	ENST00000540846		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000540846	ENST00000439724		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000540846	ENST00000537194		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000439724	ENST00000327367		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000439724	ENST00000559092		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000439724	ENST00000540846		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000439724	ENST00000439724		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000439724	ENST00000537194		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000537194	ENST00000327367		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000537194	ENST00000559092		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000537194	ENST00000540846		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000537194	ENST00000439724		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
intron-intron	ENST00000537194	ENST00000537194		ChiTaRS3.1			AK129712	SMAD3	chr15	67403023	+	SMAD3	chr15	67399173	+
Frame-shit	ENST00000325954	ENST00000325954		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
Frame-shit	ENST00000325954	ENST00000413266		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
5CDS-intron	ENST00000325954	ENST00000542701		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
Frame-shit	ENST00000413266	ENST00000325954		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
Frame-shit	ENST00000413266	ENST00000413266		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
5CDS-intron	ENST00000413266	ENST00000542701		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
intron-3CDS	ENST00000542701	ENST00000325954		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
intron-3CDS	ENST00000542701	ENST00000413266		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
intron-intron	ENST00000542701	ENST00000542701		ChiTaRS3.1			CN362232	RNF10	chr12	121009093	+	RNF10	chr12	120995435	+
3UTR-3UTR	ENST00000424459	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000424459	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000424459	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000424459	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000424459	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000424459	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000424459	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000514387	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000514387	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000514387	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000514387	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000514387	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000514387	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000514387	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000506184	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000506184	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000506184	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000506184	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000506184	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000506184	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000506184	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000454432	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000454432	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000454432	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000454432	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000454432	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000454432	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000454432	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000511209	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000511209	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000511209	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000511209	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000511209	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000511209	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000511209	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000264779	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000264779	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000264779	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000264779	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000264779	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-intron	ENST00000264779	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
intron-3UTR	ENST00000264779	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000538707	ENST00000424459		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000538707	ENST00000514387		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000538707	ENST00000506184		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000538707	ENST00000454432		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000538707	ENST00000511209		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-intron	ENST00000538707	ENST00000264779		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000538707	ENST00000538707		ChiTaRS3.1			BU676752	GPBP1	chr5	56559015	-	GPBP1	chr5	56559044	+
3UTR-3UTR	ENST00000367545	ENST00000367545		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
3UTR-intron	ENST00000367545	ENST00000367526		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
3UTR-intron	ENST00000367545	ENST00000480333		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-3UTR	ENST00000367526	ENST00000367545		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-intron	ENST00000367526	ENST00000367526		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-intron	ENST00000367526	ENST00000480333		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-3UTR	ENST00000480333	ENST00000367545		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-intron	ENST00000480333	ENST00000367526		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-intron	ENST00000480333	ENST00000480333		ChiTaRS3.1			D81982	UTRN	chr6	145173917	+	UTRN	chr6	145173683	-
intron-3CDS	ENST00000393791	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393791	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393791	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000356411	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000356411	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000356411	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000424809	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000424809	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000424809	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000393797	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393797	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393797	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550288	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550288	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550288	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000430041	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000430041	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000430041	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550454	ENST00000262027		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550454	ENST00000315473		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550454	ENST00000447721		ChiTaRS3.1			BE269882	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3UTR	ENST00000395290	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395290	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000358597	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000358597	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000395292	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000395292	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000310513	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000310513	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000361904	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000361904	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000539455	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000539455	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000531165	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000531165	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-3UTR	ENST00000532048	ENST00000395290		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000358597		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000395292		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000310513		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000361904		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000539455		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000531165		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000532048	ENST00000532048		ChiTaRS3.1			BE178392	CELF1	chr11	47489719	+	CELF1	chr11	47488530	-
intron-intron	ENST00000283943	ENST00000283943		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000389045		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000389044		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000543084		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000409677		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000283943		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000389045		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000389044		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000543084		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000409677		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000283943		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000389045		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000389044		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000543084		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000409677		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000283943		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000389045		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000389044		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000543084		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000409677		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000283943		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000389045		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000389044		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000543084		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000409677		ChiTaRS3.1			AA481192	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
3UTR-3UTR	ENST00000526589	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526589	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526589	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526589	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526589	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000527974	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000527974	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000527974	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000527974	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000527974	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000352231	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000352231	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000352231	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000352231	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000352231	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000341872	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000341872	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000341872	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000341872	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000341872	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000450372	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000450372	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000450372	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000450372	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000450372	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000366584	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000366584	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000366584	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000366584	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000366584	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000416919	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000416919	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000416919	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000416919	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000416919	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000323938	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000323938	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000323938	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000323938	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000323938	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526634	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526634	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526634	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-3UTR	ENST00000526634	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
3UTR-intron	ENST00000526634	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000525042	ENST00000526589		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000527974		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000352231		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000525042	ENST00000341872		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000525042	ENST00000450372		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-3UTR	ENST00000525042	ENST00000366584		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000416919		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000323938		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000526634		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000525042	ENST00000525042		ChiTaRS3.1			AW752952	LGALS8	chr1	236711602	-	LGALS8	chr1	236712493	-
intron-intron	ENST00000278174	ENST00000261574		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000490680		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000539640		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000493492		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000261574		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000490680		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000539640		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000493492		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000261574		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000490680		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000539640		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000493492		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000261574		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000490680		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000539640		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000493492		ChiTaRS3.1			AW606752	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000311915	ENST00000425217		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000339824		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000302438		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000311915	ENST00000545002		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000425217		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000339824		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000302438		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000544871	ENST00000545002		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000425217		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000339824		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000302438		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000398055	ENST00000545002		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000425217		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000339824		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000302438		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000540673	ENST00000545002		ChiTaRS3.1			BF963002	C12orf66	chr12	64587707	-	KSR2	chr12	118287864	+
intron-intron	ENST00000348035	ENST00000532226		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000525151		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000438298		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000442928		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000532353		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000420651		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000449449		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000456352		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000440001		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000440395		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000606892		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000348035	ENST00000607066		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000532226		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000525151		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000438298		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000442928		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000532353		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000420651		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000449449		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000456352		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000440001		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000440395		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000606892		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000356142	ENST00000607066		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000532226		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000525151		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000438298		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000442928		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000532353		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000420651		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000449449		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000456352		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000440001		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000440395		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000606892		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-intron	ENST00000488373	ENST00000607066		ChiTaRS3.1			AW937502	RAC1	chr7	6421757	-	TRAF3IP2-AS1	chr6	111915095	-
intron-3CDS	ENST00000344691	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000325074	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000437180	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000300305	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000399240	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000486278	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000494829	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-3CDS	ENST00000358356	ENST00000306177		ChiTaRS3.1			FR727326	RUNX1	chr21	36167489	-	USP42	chr7	6150914	+
intron-intron	ENST00000393240	ENST00000244769		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000393240	ENST00000436367		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000393240	ENST00000467008		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000244769		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000436367		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000467008		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000244769		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000436367		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000467008		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000244769		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000436367		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000467008		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000244769		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000436367		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000467008		ChiTaRS3.1			AW875082	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000513040	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000513040	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000513040	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000513040	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000513040	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000513040	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000513040	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000513040	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000513040	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000285689	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000285689	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000285689	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000285689	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000285689	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000285689	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000285689	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000285689	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000285689	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000515200	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000515200	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000515200	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000515200	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000515200	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000515200	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000515200	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000515200	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000515200	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000544396	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000544396	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000544396	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000544396	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000544396	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000544396	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000544396	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000544396	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000544396	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000542322	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000542322	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000542322	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000542322	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-3UTR	ENST00000542322	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000542322	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000542322	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000542322	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000542322	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000514932	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000514932	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000514932	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000514932	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000514932	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000514932	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000514932	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000514932	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000514932	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000543198	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000543198	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000543198	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000543198	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000543198	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000543198	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000543198	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000543198	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000543198	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000502348	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000502348	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000502348	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000502348	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000502348	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000502348	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000502348	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000502348	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000502348	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000511134	ENST00000513040		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000511134	ENST00000285689		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000511134	ENST00000515200		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000511134	ENST00000544396		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-3UTR	ENST00000511134	ENST00000542322		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000511134	ENST00000514932		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000511134	ENST00000543198		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000511134	ENST00000502348		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
intron-intron	ENST00000511134	ENST00000511134		ChiTaRS3.1			BE835932	GRAMD3	chr5	125829326	+	GRAMD3	chr5	125829347	-
3UTR-intron	ENST00000474629	ENST00000370859		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000370855		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000535611		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000469525		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000370859		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000370855		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000535611		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000469525		ChiTaRS3.1			AI634522	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-5UTR	ENST00000240079	ENST00000598463		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000240079	ENST00000345523		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000240079	ENST00000391812		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000240079	ENST00000596655		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000240079	ENST00000595794		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000545679	ENST00000598463		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000545679	ENST00000345523		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000545679	ENST00000391812		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000545679	ENST00000596655		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000545679	ENST00000595794		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000539515	ENST00000598463		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000539515	ENST00000345523		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000539515	ENST00000391812		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000539515	ENST00000596655		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000539515	ENST00000595794		ChiTaRS3.1			BF921302	CCDC53	chr12	102455797	+	C19orf48	chr19	51302029	-
intron-5UTR	ENST00000601493	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601493	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601493	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601493	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601493	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601493	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601493	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000597503	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597503	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597503	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597503	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597503	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597503	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597503	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000243643	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000243643	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000243643	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000243643	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000243643	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000243643	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000243643	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000595193	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595193	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595193	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595193	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595193	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595193	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595193	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000594011	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000594011	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000594011	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000594011	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000594011	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000594011	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000594011	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000455735	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000455735	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000455735	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000455735	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000455735	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000455735	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000455735	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000440291	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000440291	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000440291	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000440291	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000440291	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000440291	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000440291	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000421033	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000421033	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000421033	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000421033	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000421033	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000421033	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000421033	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000448501	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000448501	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000448501	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000448501	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000448501	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000448501	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000448501	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000500065	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000500065	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000500065	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000500065	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000500065	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000500065	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000500065	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000597748	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000597748	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597748	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597748	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597748	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597748	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000597748	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000601215	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000601215	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601215	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601215	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601215	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601215	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000601215	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000595813	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000595813	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595813	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595813	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595813	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595813	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000595813	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000599261	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000599261	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000599261	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000599261	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000599261	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000599261	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000599261	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000596683	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000596683	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000596683	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000596683	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000596683	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000596683	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000596683	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-5UTR	ENST00000600574	ENST00000601493		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000597503		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000243643		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000595193		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000594011		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000455735		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000440291		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000421033		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000448501		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000500065		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-3UTR	ENST00000600574	ENST00000597748		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000600574	ENST00000601215		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000600574	ENST00000595813		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000600574	ENST00000599261		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000600574	ENST00000596683		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000600574	ENST00000600574		ChiTaRS3.1			AI016112	ZNF415	chr19	53612840	-	ZNF415	chr19	53612840	+
intron-intron	ENST00000535254	ENST00000483295		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000535254	ENST00000235382		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000409311	ENST00000483295		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000409311	ENST00000235382		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000302759	ENST00000483295		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000302759	ENST00000235382		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000478175	ENST00000483295		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000478175	ENST00000235382		ChiTaRS3.1			AU119852	BUB1	chr2	111425124	-	RGS2	chr1	192780565	+
intron-intron	ENST00000375190	ENST00000355312		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000356259		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000338373		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000360185		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000343646		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000354574		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000457474		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000361006		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000553118		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000551209		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000548655		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000547815		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000320063		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000355312		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000356259		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000338373		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000360185		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000343646		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000354574		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000457474		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000361006		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000553118		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000551209		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000548655		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000547815		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000320063		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000355312		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000356259		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000338373		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000360185		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000343646		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000354574		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000457474		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000361006		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000553118		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000551209		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000548655		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000547815		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000320063		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000355312		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000356259		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000338373		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000360185		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000343646		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000354574		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000457474		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000361006		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000553118		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000551209		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000548655		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000547815		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000320063		ChiTaRS3.1			AA908882	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000352732	ENST00000352732		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000565973		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000355100		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000562254		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000352732		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000565973		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000355100		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000562254		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000352732		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000565973		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000355100		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000562254		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000352732		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000565973		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000355100		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000562254		ChiTaRS3.1			AW853202	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000263708	ENST00000263708		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000263708	ENST00000544261		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000263708	ENST00000460162		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000544261	ENST00000263708		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000544261	ENST00000544261		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000544261	ENST00000460162		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000460162	ENST00000263708		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000460162	ENST00000544261		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000460162	ENST00000460162		ChiTaRS3.1			AA837802	PTPN4	chr2	120695005	+	PTPN4	chr2	120695117	-
intron-intron	ENST00000521578	ENST00000381848		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000521578	ENST00000592610		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000521578	ENST00000586133		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000520105	ENST00000381848		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000520105	ENST00000592610		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000520105	ENST00000586133		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000349124	ENST00000381848		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000349124	ENST00000592610		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000349124	ENST00000586133		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000329397	ENST00000381848		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000329397	ENST00000592610		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000329397	ENST00000586133		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000524028	ENST00000381848		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000524028	ENST00000592610		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
intron-intron	ENST00000524028	ENST00000586133		ChiTaRS3.1			DA675502	PTP4A3	chr8	142414760	+	PLIN5	chr19	4540048	-
Frame-shit	ENST00000430725	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000430725	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000430725	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000430725	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000430725	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000430725	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000430725	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000325438	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000325438	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000458164	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000458164	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000447393	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000447393	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000547217	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000547217	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
Frame-shit	ENST00000551743	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5CDS-intron	ENST00000551743	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000430725		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000325438		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000458164		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000447393		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000547217		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-3CDS	ENST00000551801	ENST00000551743		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
5UTR-intron	ENST00000551801	ENST00000551801		ChiTaRS3.1			BE409412	PACS2	chr14	105859115	+	PACS2	chr14	105858957	+
intron-intron	ENST00000488834	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000488834	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000474597	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000244763	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000397511	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000534851	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000489567	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000479365	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000405409		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000414461		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000449924		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000262829		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000397303		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000359369		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000416721		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
intron-intron	ENST00000462112	ENST00000438146		ChiTaRS3.1			AI082662	SSR1	chr6	7300912	+	RBFOX2	chr22	36423124	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BG564122	MALAT1	chr11	65267539	+	MALAT1	chr11	65267186	+
intron-intron	ENST00000390548	ENST00000390237		ChiTaRS3.1			AB064082	IGHG1	chr2	89197299	+	IGKC	chr2	89161435	-
intron-intron	ENST00000372445	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000533820		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000533129		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000524773		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000279247		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000527469		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000527323		ChiTaRS3.1			BE143942	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
3UTR-intron	ENST00000359301	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000359301	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000251038	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000302216	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000556945	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000557607	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555755	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000393514	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000336693	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-intron	ENST00000557605	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000318308	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000555900	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000359301		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000251038		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000302216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000556945		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000557607		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000555755		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000393514		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000336693		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000557605		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000318308		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000555900		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
3UTR-intron	ENST00000406216	ENST00000406216		ChiTaRS3.1			BU616552	ZC3H14	chr14	89078123	-	ZC3H14	chr14	89068379	+
intron-3UTR	ENST00000256474	ENST00000256474		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-3UTR	ENST00000256474	ENST00000345392		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-intron	ENST00000256474	ENST00000477538		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-3UTR	ENST00000345392	ENST00000256474		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-3UTR	ENST00000345392	ENST00000345392		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-intron	ENST00000345392	ENST00000477538		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-3UTR	ENST00000477538	ENST00000256474		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-3UTR	ENST00000477538	ENST00000345392		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
intron-intron	ENST00000477538	ENST00000477538		ChiTaRS3.1			CA391692	VHL	chr3	10194592	+	VHL	chr3	10192792	+
5CDS-intron	ENST00000396373	ENST00000379441		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
5CDS-intron	ENST00000396373	ENST00000179765		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
5CDS-intron	ENST00000396373	ENST00000551812		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
5CDS-intron	ENST00000396373	ENST00000549884		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
5CDS-intron	ENST00000396373	ENST00000553222		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
3UTR-intron	ENST00000544715	ENST00000379441		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
3UTR-intron	ENST00000544715	ENST00000179765		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
3UTR-intron	ENST00000544715	ENST00000551812		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
3UTR-intron	ENST00000544715	ENST00000549884		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
3UTR-intron	ENST00000544715	ENST00000553222		ChiTaRS3.1			AM181353	ETV6	chr12	11905514	+	BAZ2A	chr12	57020574	+
5CDS-3UTR	ENST00000326775	ENST00000466801		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000326775	ENST00000409321		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000326775	ENST00000409115		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000326775	ENST00000341369		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000326775	ENST00000409683		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000326775	ENST00000410064		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000466801		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000409321		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000409115		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000341369		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000409683		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000451158	ENST00000410064		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000466801		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000409321		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000409115		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000341369		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000409683		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
5CDS-3UTR	ENST00000394170	ENST00000410064		ChiTaRS3.1			BC015622	ZKSCAN5	chr7	99128776	+	PTMA	chr2	232576679	+
intron-intron	ENST00000390548	ENST00000517970		ChiTaRS3.1			CV338762	IGHG1	chr22	22675048	+	WWP1	chr8	87358639	+
intron-intron	ENST00000390548	ENST00000349423		ChiTaRS3.1			CV338762	IGHG1	chr22	22675048	+	WWP1	chr8	87358639	+
intron-intron	ENST00000390548	ENST00000341922		ChiTaRS3.1			CV338762	IGHG1	chr22	22675048	+	WWP1	chr8	87358639	+
intron-intron	ENST00000390548	ENST00000265428		ChiTaRS3.1			CV338762	IGHG1	chr22	22675048	+	WWP1	chr8	87358639	+
intron-intron	ENST00000390548	ENST00000523863		ChiTaRS3.1			CV338762	IGHG1	chr22	22675048	+	WWP1	chr8	87358639	+
intron-intron	ENST00000425528	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000425528	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000441499	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000356861	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000450764	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000592287	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000588216	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000425528		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000441499		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000356861		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000450764		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000592287		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000588216		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-intron	ENST00000589956	ENST00000589956		ChiTaRS3.1			BI026612	TNPO2	chr19	12818106	-	TNPO2	chr19	12819417	-
intron-3CDS	ENST00000315757	ENST00000315757		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-3CDS	ENST00000315757	ENST00000423218		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-intron	ENST00000315757	ENST00000562826		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-3CDS	ENST00000423218	ENST00000315757		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-3CDS	ENST00000423218	ENST00000423218		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-intron	ENST00000423218	ENST00000562826		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-3CDS	ENST00000562826	ENST00000315757		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-3CDS	ENST00000562826	ENST00000423218		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
intron-intron	ENST00000562826	ENST00000562826		ChiTaRS3.1			BG013602	ITGA11	chr15	68650820	-	ITGA11	chr15	68643076	+
In-frame	ENST00000321153	ENST00000368141		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
5CDS-intron	ENST00000321153	ENST00000491210		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
intron-3CDS	ENST00000532004	ENST00000368141		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
intron-intron	ENST00000532004	ENST00000491210		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
In-frame	ENST00000530797	ENST00000368141		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
5CDS-intron	ENST00000530797	ENST00000491210		ChiTaRS3.1			CB529802	RPLP2	chr11	810303	-	MNDA	chr1	158817536	-
intron-3UTR	ENST00000373570	ENST00000389054		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000520569		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000253811		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000398566		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000398562		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000398557		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000389057		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000373570	ENST00000518047		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-intron	ENST00000373570	ENST00000494967		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000389054		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000520569		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000253811		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000398566		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000398562		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000398557		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000389057		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000348462	ENST00000518047		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-intron	ENST00000348462	ENST00000494967		ChiTaRS3.1			BF802262	RPL35	chr9	127624236	+	DIAPH1	chr5	140896229	-
intron-3UTR	ENST00000390168	ENST00000368921		ChiTaRS3.1			AA738002	H19	chr11	2016466	+	MLLT11	chr1	151040070	-
intron-intron	ENST00000431446	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000431446		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000496459		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000570135		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000320676		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000562646		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000565438		ChiTaRS3.1			AA461092	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-3CDS	ENST00000202917	ENST00000451137		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-intron	ENST00000202917	ENST00000480413		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-3CDS	ENST00000445409	ENST00000451137		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-intron	ENST00000445409	ENST00000480413		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
3UTR-3CDS	ENST00000452357	ENST00000451137		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
3UTR-intron	ENST00000452357	ENST00000480413		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-3CDS	ENST00000551241	ENST00000451137		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-intron	ENST00000551241	ENST00000480413		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-3CDS	ENST00000553185	ENST00000451137		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-intron	ENST00000553185	ENST00000480413		ChiTaRS3.1			AW889412	OAS1	chr12	113355570	+	CYR61	chr1	86048095	-
intron-3UTR	ENST00000426256	ENST00000287908		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-intron	ENST00000426256	ENST00000394626		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-3UTR	ENST00000426256	ENST00000394622		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-intron	ENST00000426256	ENST00000394632		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-intron	ENST00000426256	ENST00000394621		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-intron	ENST00000426256	ENST00000402625		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-intron	ENST00000426256	ENST00000394629		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-3UTR	ENST00000326132	ENST00000287908		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000326132	ENST00000394626		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-3UTR	ENST00000326132	ENST00000394622		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000326132	ENST00000394632		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000326132	ENST00000394621		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000326132	ENST00000402625		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000326132	ENST00000394629		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-3UTR	ENST00000266252	ENST00000287908		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000266252	ENST00000394626		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-3UTR	ENST00000266252	ENST00000394622		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000266252	ENST00000394632		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000266252	ENST00000394621		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000266252	ENST00000402625		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
3UTR-intron	ENST00000266252	ENST00000394629		ChiTaRS3.1			AA772562	RNF185	chr22	31602924	-	STEAP2	chr7	89862813	-
intron-3UTR	ENST00000461497	ENST00000461497		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000461497	ENST00000282903		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000461497	ENST00000360060		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-intron	ENST00000461497	ENST00000494950		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000282903	ENST00000461497		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000282903	ENST00000282903		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000282903	ENST00000360060		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-intron	ENST00000282903	ENST00000494950		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000360060	ENST00000461497		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000360060	ENST00000282903		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000360060	ENST00000360060		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-intron	ENST00000360060	ENST00000494950		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000494950	ENST00000461497		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000494950	ENST00000282903		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-3UTR	ENST00000494950	ENST00000360060		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
intron-intron	ENST00000494950	ENST00000494950		ChiTaRS3.1			AA503462	PLOD2	chr3	145787424	-	PLOD2	chr3	145787802	+
3UTR-3CDS	ENST00000533861	ENST00000372628		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-3CDS	ENST00000533861	ENST00000243286		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-3CDS	ENST00000533861	ENST00000372627		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-intron	ENST00000533861	ENST00000477014		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-3CDS	ENST00000333449	ENST00000372628		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-3CDS	ENST00000333449	ENST00000243286		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-3CDS	ENST00000333449	ENST00000372627		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
3UTR-intron	ENST00000333449	ENST00000477014		ChiTaRS3.1			CB053892	TMEM179B	chr11	62557651	-	TCEAL3	chrX	102864548	+
In-frame	ENST00000276893	ENST00000338086		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000319801		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000361078		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000536417		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
In-frame	ENST00000276893	ENST00000403432		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
5CDS-intron	ENST00000276893	ENST00000420234		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000338086		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000319801		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000361078		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000536417		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381373	ENST00000403432		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-intron	ENST00000381373	ENST00000420234		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000338086		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000319801		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000361078		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000536417		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-3CDS	ENST00000485617	ENST00000403432		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
3UTR-intron	ENST00000485617	ENST00000420234		ChiTaRS3.1			BE697672	UHRF2	chr9	6506093	-	PUM2	chr2	20451426	-
intron-3CDS	ENST00000381086	ENST00000377182		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-intron	ENST00000381086	ENST00000460688		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-3CDS	ENST00000275521	ENST00000377182		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-intron	ENST00000275521	ENST00000460688		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-3CDS	ENST00000381083	ENST00000377182		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-intron	ENST00000381083	ENST00000460688		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-3CDS	ENST00000465642	ENST00000377182		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-intron	ENST00000465642	ENST00000460688		ChiTaRS3.1			DA574652	IGFBP3	chr7	45960644	-	MAMDC2	chr9	72833417	+
intron-3UTR	ENST00000379705	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379705		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379681		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000338947		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379679		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000426868		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000379673		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000355779		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000358477		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000447043		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000494529		ChiTaRS3.1			AF063822	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000324446	ENST00000280527		ChiTaRS3.1			BI022702	TTTY14	chrY	21154537	-	CRIM1	chr2	36764121	+
intron-intron	ENST00000324446	ENST00000473403		ChiTaRS3.1			BI022702	TTTY14	chrY	21154537	-	CRIM1	chr2	36764121	+
intron-intron	ENST00000263846	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000263846	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540677	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000539008	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542836	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000542670	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000535826	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000332509		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000335539		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000402064		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000490473		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000436218		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000447598		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000435484		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
intron-intron	ENST00000540831	ENST00000417303		ChiTaRS3.1			BF871762	SYT7	chr11	61300411	+	PLA2G6	chr22	38522333	-
3UTR-3CDS	ENST00000249442	ENST00000249442		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
3UTR-3CDS	ENST00000249442	ENST00000392529		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
3UTR-3CDS	ENST00000249442	ENST00000443241		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
3UTR-3CDS	ENST00000392529	ENST00000249442		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
3UTR-3CDS	ENST00000392529	ENST00000392529		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
3UTR-3CDS	ENST00000392529	ENST00000443241		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
intron-3CDS	ENST00000443241	ENST00000249442		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
intron-3CDS	ENST00000443241	ENST00000392529		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
intron-3CDS	ENST00000443241	ENST00000443241		ChiTaRS3.1			CA449952	MTX2	chr2	177202487	-	MTX2	chr2	177202221	+
intron-intron	ENST00000258341	ENST00000380027		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000396855		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000305836		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000380034		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000396847		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000483835		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000258341	ENST00000396853		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000380027		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000396855		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000305836		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000380034		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000396847		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000483835		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-intron	ENST00000466964	ENST00000396853		ChiTaRS3.1			BG998082	LAMC1	chr1	183042196	-	TRIM5	chr11	5851834	+
intron-3CDS	ENST00000359154	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000359154	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000359154	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000448661	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000448661	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000448661	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000569174	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000569174	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000569174	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000356003	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000356003	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000356003	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000544162	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000544162	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000544162	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000542271	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000542271	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000542271	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000568684	ENST00000265686		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-3CDS	ENST00000568684	ENST00000532635		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000568684	ENST00000530802		ChiTaRS3.1			BE828372	WWP2	chr16	69965191	-	TCIRG1	chr11	67812514	-
intron-intron	ENST00000495075	ENST00000369022		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000495075	ENST00000369020		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000495075	ENST00000369025		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000495075	ENST00000369021		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000495075	ENST00000479803		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000310776	ENST00000369022		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000310776	ENST00000369020		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000310776	ENST00000369025		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000310776	ENST00000369021		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000310776	ENST00000479803		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000465056	ENST00000369022		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000465056	ENST00000369020		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000465056	ENST00000369025		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000465056	ENST00000369021		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000465056	ENST00000479803		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000478464	ENST00000369022		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000478464	ENST00000369020		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000478464	ENST00000369025		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000478464	ENST00000369021		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000478464	ENST00000479803		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000489521	ENST00000369022		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000489521	ENST00000369020		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000489521	ENST00000369025		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000489521	ENST00000369021		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
intron-intron	ENST00000489521	ENST00000479803		ChiTaRS3.1			BE045932	MRPS22	chr3	139063218	-	SCML4	chr6	108039851	+
5CDS-3UTR	ENST00000440693	ENST00000396591		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000440693	ENST00000380860		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000440693	ENST00000502979		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-3UTR	ENST00000409663	ENST00000396591		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000409663	ENST00000380860		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000409663	ENST00000502979		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-3UTR	ENST00000409959	ENST00000396591		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000409959	ENST00000380860		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5CDS-intron	ENST00000409959	ENST00000502979		ChiTaRS3.1			BC021232	KIAA0922	chr4	154525531	+	SLC30A5	chr5	68425973	+
5UTR-5UTR	ENST00000215909	ENST00000375772		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
5UTR-intron	ENST00000215909	ENST00000375722		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
5UTR-intron	ENST00000215909	ENST00000326587		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
5UTR-intron	ENST00000215909	ENST00000375695		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
5UTR-intron	ENST00000215909	ENST00000494718		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-5UTR	ENST00000489315	ENST00000375772		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-intron	ENST00000489315	ENST00000375722		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-intron	ENST00000489315	ENST00000326587		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-intron	ENST00000489315	ENST00000375695		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-intron	ENST00000489315	ENST00000494718		ChiTaRS3.1			BU859182	LGALS1	chr22	38071664	-	MAGED1	chrX	51546181	+
intron-intron	ENST00000373840	ENST00000283629		ChiTaRS3.1			AW892042	RAB14	chr9	123943259	-	UBP1	chr3	33478731	-
intron-intron	ENST00000373840	ENST00000447368		ChiTaRS3.1			AW892042	RAB14	chr9	123943259	-	UBP1	chr3	33478731	-
intron-intron	ENST00000373840	ENST00000283628		ChiTaRS3.1			AW892042	RAB14	chr9	123943259	-	UBP1	chr3	33478731	-
intron-intron	ENST00000373840	ENST00000486388		ChiTaRS3.1			AW892042	RAB14	chr9	123943259	-	UBP1	chr3	33478731	-
In-frame	ENST00000457030	ENST00000457030		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000457030	ENST00000330010		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000457030	ENST00000294624		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000457030	ENST00000334785		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000457030	ENST00000480732		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000330010	ENST00000457030		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000330010	ENST00000330010		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000330010	ENST00000294624		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000330010	ENST00000334785		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000330010	ENST00000480732		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000294624	ENST00000457030		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000294624	ENST00000330010		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000294624	ENST00000294624		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000294624	ENST00000334785		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3UTR	ENST00000294624	ENST00000480732		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000334785	ENST00000457030		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000334785	ENST00000330010		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000334785	ENST00000294624		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000334785	ENST00000334785		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000334785	ENST00000480732		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000480732	ENST00000457030		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000480732	ENST00000330010		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000480732	ENST00000294624		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000480732	ENST00000334785		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3UTR	ENST00000480732	ENST00000480732		ChiTaRS3.1			AW373642	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000368972	ENST00000368972		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000368972	ENST00000392644		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000368972	ENST00000481850		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000392644	ENST00000368972		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000392644	ENST00000392644		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000392644	ENST00000481850		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000481850	ENST00000368972		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000481850	ENST00000392644		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000481850	ENST00000481850		ChiTaRS3.1			AW892942	ARMC2	chr6	109175427	-	ARMC2	chr6	109197554	-
intron-intron	ENST00000373382	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000373382	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000373382	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000263559	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000263559	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000263559	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000395098	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000395098	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000395098	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000546041	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000546041	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000546041	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000490696	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000490696	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000490696	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000541711	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000541711	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000541711	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000489794	ENST00000282516		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000489794	ENST00000448238		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-intron	ENST00000489794	ENST00000504430		ChiTaRS3.1			BE072522	VPS26A	chr10	70930293	-	NIPBL	chr5	36989263	+
intron-3UTR	ENST00000391826	ENST00000584767		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-5UTR	ENST00000391826	ENST00000581589		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-intron	ENST00000391826	ENST00000322444		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-3UTR	ENST00000595948	ENST00000584767		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-5UTR	ENST00000595948	ENST00000581589		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-intron	ENST00000595948	ENST00000322444		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-3UTR	ENST00000341114	ENST00000584767		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-5UTR	ENST00000341114	ENST00000581589		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
intron-intron	ENST00000341114	ENST00000322444		ChiTaRS3.1			CD102882	IL4I1	chr19	50432462	-	KCTD2	chr17	73028714	+
3UTR-3CDS	ENST00000233575	ENST00000394054		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000233575	ENST00000326151		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000233575	ENST00000326172		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000543024	ENST00000394054		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000543024	ENST00000326151		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000543024	ENST00000326172		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
intron-3CDS	ENST00000537606	ENST00000394054		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
intron-3CDS	ENST00000537606	ENST00000326151		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
intron-3CDS	ENST00000537606	ENST00000326172		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000542478	ENST00000394054		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000542478	ENST00000326151		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
3UTR-3CDS	ENST00000542478	ENST00000326172		ChiTaRS3.1			BG938902	SNX17	chr2	27599736	-	NFKBIZ	chr3	101571756	+
intron-intron	ENST00000281928	ENST00000431726		ChiTaRS3.1			BF357082	MED13L	chr12	116667232	+	PTPN23	chr3	47439486	-
intron-intron	ENST00000281928	ENST00000265562		ChiTaRS3.1			BF357082	MED13L	chr12	116667232	+	PTPN23	chr3	47439486	-
intron-intron	ENST00000551197	ENST00000431726		ChiTaRS3.1			BF357082	MED13L	chr12	116667232	+	PTPN23	chr3	47439486	-
intron-intron	ENST00000551197	ENST00000265562		ChiTaRS3.1			BF357082	MED13L	chr12	116667232	+	PTPN23	chr3	47439486	-
intron-3CDS	ENST00000264474	ENST00000264474		ChiTaRS3.1			AW265472	CSTA	chr3	122056392	-	CSTA	chr3	122044154	+
intron-3CDS	ENST00000264474	ENST00000479204		ChiTaRS3.1			AW265472	CSTA	chr3	122056392	-	CSTA	chr3	122044154	+
intron-3CDS	ENST00000479204	ENST00000264474		ChiTaRS3.1			AW265472	CSTA	chr3	122056392	-	CSTA	chr3	122044154	+
intron-3CDS	ENST00000479204	ENST00000479204		ChiTaRS3.1			AW265472	CSTA	chr3	122056392	-	CSTA	chr3	122044154	+
intron-intron	ENST00000265734	ENST00000348520		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000380038		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000265734	ENST00000389744		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000265734	ENST00000557575		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000265734	ENST00000553286		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000347839		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000555836		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000334553		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000246489		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000557450		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000554280		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000265734	ENST00000452929		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000265734	ENST00000445352		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000348520		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000380038		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000424848	ENST00000389744		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000424848	ENST00000557575		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000424848	ENST00000553286		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000347839		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000555836		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000334553		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000246489		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000557450		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000554280		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000424848	ENST00000452929		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000424848	ENST00000445352		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000348520		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000380038		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000491250	ENST00000389744		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000491250	ENST00000557575		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000491250	ENST00000553286		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000347839		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000555836		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000334553		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000246489		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000557450		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000554280		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-intron	ENST00000491250	ENST00000452929		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3UTR	ENST00000491250	ENST00000445352		ChiTaRS3.1			AW889192	CDK6	chr7	92377348	+	KLC1	chr14	104152201	-
intron-3CDS	ENST00000376828	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376828	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376828	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376828	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376828	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376828	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428701	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000360323	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376818	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000376815	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400665	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546545	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000444098	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452715	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000445373	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000420559	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000546634	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423373	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000452577	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000457132	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000450984	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547931	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000449127	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000412263	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000415687	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000400682	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000553052	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383621	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383622	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000383623	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000422371	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000550897	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000428952	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000426863	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000429890	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434881	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000547241	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000423011	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000448306	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000434907	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000410108		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000325147		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000382762		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000529614		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000332865		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3CDS	ENST00000430253	ENST00000486280		ChiTaRS3.1			BX648752	HLA-G	chr6	1231826	+	BET1L	chr11	205980	-
intron-3UTR	ENST00000320785	ENST00000369851		ChiTaRS3.1			AW897822	KIF1C	chr17	4918034	-	GNAI3	chr1	110135044	-
intron-3UTR	ENST00000573815	ENST00000369851		ChiTaRS3.1			AW897822	KIF1C	chr17	4918034	-	GNAI3	chr1	110135044	-
intron-5UTR	ENST00000267484	ENST00000366756		ChiTaRS3.1			AF003522	RTN1	chr14	60063163	+	DLL1	chr6	170599302	-
intron-5UTR	ENST00000395090	ENST00000366756		ChiTaRS3.1			AF003522	RTN1	chr14	60063163	+	DLL1	chr6	170599302	-
intron-5UTR	ENST00000342503	ENST00000366756		ChiTaRS3.1			AF003522	RTN1	chr14	60063163	+	DLL1	chr6	170599302	-
intron-5UTR	ENST00000557422	ENST00000366756		ChiTaRS3.1			AF003522	RTN1	chr14	60063163	+	DLL1	chr6	170599302	-
5CDS-intron	ENST00000341911	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000341911	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000316528	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000442647	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000367814	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000525369	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534121	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000533624	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000534044	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000528774	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
3UTR-intron	ENST00000531845	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
5CDS-intron	ENST00000527615	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000380934		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000380959		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000380953		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000397575		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000397581		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000397579		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000543693		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000380924		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-intron	ENST00000420123	ENST00000380921		ChiTaRS3.1			FJ969917	MYB	chr6	135524462	+	NFIB	chr9	14116347	-
intron-3CDS	ENST00000373019	ENST00000373019		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-intron	ENST00000373019	ENST00000448721		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-5UTR	ENST00000373019	ENST00000489537		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-3CDS	ENST00000448721	ENST00000373019		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-intron	ENST00000448721	ENST00000448721		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-5UTR	ENST00000448721	ENST00000489537		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-3CDS	ENST00000489537	ENST00000373019		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-intron	ENST00000489537	ENST00000448721		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-5UTR	ENST00000489537	ENST00000489537		ChiTaRS3.1			BQ328602	SF3A3	chr1	38423760	-	SF3A3	chr1	38453307	-
intron-3CDS	ENST00000255559	ENST00000361204		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-intron	ENST00000255559	ENST00000491541		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-3CDS	ENST00000542342	ENST00000361204		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-intron	ENST00000542342	ENST00000491541		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-3CDS	ENST00000579988	ENST00000361204		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-intron	ENST00000579988	ENST00000491541		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-3CDS	ENST00000579732	ENST00000361204		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-intron	ENST00000579732	ENST00000491541		ChiTaRS3.1			BF802712	SLC39A11	chr17	71010314	+	SREBF2	chr22	42264619	+
intron-3CDS	ENST00000378847	ENST00000421307		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378847	ENST00000354379		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378847	ENST00000336686		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378847	ENST00000421276		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378847	ENST00000396428		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378847	ENST00000440230		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-intron	ENST00000378847	ENST00000490597		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000421307		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000354379		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000336686		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000421276		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000396428		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000487696	ENST00000440230		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-intron	ENST00000487696	ENST00000490597		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000421307		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000354379		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000336686		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000421276		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000396428		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-3CDS	ENST00000378845	ENST00000440230		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-intron	ENST00000378845	ENST00000490597		ChiTaRS3.1			BF229112	CAMK1D	chr10	12606364	-	LRRFIP2	chr3	37136355	-
intron-5UTR	ENST00000251296	ENST00000555688		ChiTaRS3.1			BX951952	IGSF21	chr1	18690340	+	LINC00641	chr14	21670057	-
intron-5UTR	ENST00000473951	ENST00000555688		ChiTaRS3.1			BX951952	IGSF21	chr1	18690340	+	LINC00641	chr14	21670057	-
intron-intron	ENST00000326448	ENST00000326448		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000326448	ENST00000483465		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000326448	ENST00000496589		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000326448	ENST00000477495		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000483465	ENST00000326448		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000483465	ENST00000483465		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000483465	ENST00000496589		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000483465	ENST00000477495		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000496589	ENST00000326448		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000496589	ENST00000483465		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000496589	ENST00000496589		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000496589	ENST00000477495		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000477495	ENST00000326448		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000477495	ENST00000483465		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000477495	ENST00000496589		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-intron	ENST00000477495	ENST00000477495		ChiTaRS3.1			AW088472	IFT80	chr3	160129707	-	IFT80	chrX	135996402	-
intron-3UTR	ENST00000549920	ENST00000317216		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549920	ENST00000522910		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549920	ENST00000519492		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549920	ENST00000524088		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-3UTR	ENST00000550645	ENST00000317216		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000550645	ENST00000522910		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000550645	ENST00000519492		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000550645	ENST00000524088		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-3UTR	ENST00000552588	ENST00000317216		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000552588	ENST00000522910		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000552588	ENST00000519492		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000552588	ENST00000524088		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-3UTR	ENST00000549273	ENST00000317216		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549273	ENST00000522910		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549273	ENST00000519492		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000549273	ENST00000524088		ChiTaRS3.1			D57272	RPL18	chr19	49118665	+	EGR3	chr8	22545541	-
intron-intron	ENST00000266070	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266070	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395343	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395340	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000395335	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370371	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370368	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000354665	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000370366	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000266070		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000395343		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000395340		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000395335		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000370371		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000370368		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000354665		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000370366		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-intron	ENST00000266071	ENST00000266071		ChiTaRS3.1			AA190742	DIDO1	chr20	61535461	-	DIDO1	chr20	61535585	+
intron-3UTR	ENST00000392845	ENST00000392845		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000392845	ENST00000359479		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-intron	ENST00000392845	ENST00000460729		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000359479	ENST00000392845		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000359479	ENST00000359479		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-intron	ENST00000359479	ENST00000460729		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000460729	ENST00000392845		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000460729	ENST00000359479		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-intron	ENST00000460729	ENST00000460729		ChiTaRS3.1			AA829202	SLC33A1	chr3	155544375	-	SLC33A1	chr3	155544327	+
intron-3UTR	ENST00000378204	ENST00000396472		ChiTaRS3.1			AK130402	EXT1	chr8	118942307	-	FAM177A1	chr14	35551657	+
intron-intron	ENST00000378204	ENST00000382406		ChiTaRS3.1			AK130402	EXT1	chr8	118942307	-	FAM177A1	chr14	35551657	+
intron-3UTR	ENST00000378204	ENST00000280987		ChiTaRS3.1			AK130402	EXT1	chr8	118942307	-	FAM177A1	chr14	35551657	+
intron-intron	ENST00000378204	ENST00000554052		ChiTaRS3.1			AK130402	EXT1	chr8	118942307	-	FAM177A1	chr14	35551657	+
intron-intron	ENST00000394003	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000394003	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000361874	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000407639	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409438	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409240	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409868	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000409567	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000483195		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000394019		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000423644		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000346834		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000359484		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000357822		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000358683		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000377632		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
intron-intron	ENST00000495643	ENST00000377634		ChiTaRS3.1			BU620312	DCTN1	chr2	74593389	+	SLC4A5	chr2	74593074	-
5CDS-intron	ENST00000324932	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
5CDS-intron	ENST00000359171	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
5CDS-intron	ENST00000355260	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
5CDS-intron	ENST00000397004	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
intron-intron	ENST00000397007	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
intron-intron	ENST00000488828	ENST00000467933		ChiTaRS3.1			AF133333	NUP98	chr11	3781769	-	SRGAP2B	chr1	144044079	-
intron-3CDS	ENST00000361445	ENST00000361445		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-3CDS	ENST00000361445	ENST00000376838		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-intron	ENST00000361445	ENST00000495435		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-3CDS	ENST00000376838	ENST00000361445		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-3CDS	ENST00000376838	ENST00000376838		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-intron	ENST00000376838	ENST00000495435		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-3CDS	ENST00000495435	ENST00000361445		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-3CDS	ENST00000495435	ENST00000376838		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
intron-intron	ENST00000495435	ENST00000495435		ChiTaRS3.1			BE830802	MTOR	chr1	11186756	-	MTOR	chr1	11182129	+
5CDS-3UTR	ENST00000253110	ENST00000253110		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000253110	ENST00000591813		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000253110	ENST00000397881		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000591813	ENST00000253110		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000591813	ENST00000591813		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000591813	ENST00000397881		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000397881	ENST00000253110		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000397881	ENST00000591813		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
5CDS-3UTR	ENST00000397881	ENST00000397881		ChiTaRS3.1			AI971032	C19orf66	chr19	10202943	-	C19orf66	chr19	10203465	-
intron-3UTR	ENST00000280886	ENST00000327535		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000280886	ENST00000327575		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000280886	ENST00000374421		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000280886	ENST00000374419		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000280886	ENST00000374418		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-3UTR	ENST00000381496	ENST00000327535		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000381496	ENST00000327575		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000381496	ENST00000374421		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000381496	ENST00000374419		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000381496	ENST00000374418		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-3UTR	ENST00000540204	ENST00000327535		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000540204	ENST00000327575		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000540204	ENST00000374421		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000540204	ENST00000374419		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
intron-intron	ENST00000540204	ENST00000374418		ChiTaRS3.1			BF372542	DIP2C	chr10	331396	+	IFNLR1	chr1	24481892	-
In-frame	ENST00000306177	ENST00000306177		ChiTaRS3.1			BM983852	USP42	chr7	6194545	-	USP42	chr7	6194727	+
intron-intron	ENST00000396659	ENST00000399959		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000396659	ENST00000478993		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000396659	ENST00000457138		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000396659	ENST00000441189		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000396659	ENST00000542215		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000558336	ENST00000399959		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000558336	ENST00000478993		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000558336	ENST00000457138		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000558336	ENST00000441189		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000558336	ENST00000542215		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000458245	ENST00000399959		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000458245	ENST00000478993		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000458245	ENST00000457138		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000458245	ENST00000441189		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000458245	ENST00000542215		ChiTaRS3.1			BF933512	GATM	chr15	45656269	-	DDX3X	chrX	41197147	+
intron-intron	ENST00000310301	ENST00000377669		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000310301	ENST00000377666		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000310301	ENST00000472022		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000395969	ENST00000377669		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000395969	ENST00000377666		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000395969	ENST00000472022		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000466017	ENST00000377669		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000466017	ENST00000377666		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-intron	ENST00000466017	ENST00000472022		ChiTaRS3.1			BF821492	VPS41	chr7	38764628	-	KLF12	chr13	74663171	-
intron-3UTR	ENST00000409185	ENST00000409185		ChiTaRS3.1			BE872492	FAM168B	chr2	131806593	+	FAM168B	chr2	131806568	-
intron-intron	ENST00000409185	ENST00000389915		ChiTaRS3.1			BE872492	FAM168B	chr2	131806593	+	FAM168B	chr2	131806568	-
intron-3UTR	ENST00000389915	ENST00000409185		ChiTaRS3.1			BE872492	FAM168B	chr2	131806593	+	FAM168B	chr2	131806568	-
intron-intron	ENST00000389915	ENST00000389915		ChiTaRS3.1			BE872492	FAM168B	chr2	131806593	+	FAM168B	chr2	131806568	-
intron-3UTR	ENST00000262428	ENST00000548553		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3UTR	ENST00000262428	ENST00000332160		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3UTR	ENST00000567278	ENST00000548553		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3UTR	ENST00000567278	ENST00000332160		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3UTR	ENST00000564057	ENST00000548553		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3UTR	ENST00000564057	ENST00000332160		ChiTaRS3.1			AW889822	COTL1	chr16	84599217	-	METTL7A	chr12	51326026	+
intron-3CDS	ENST00000354883	ENST00000331595		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3UTR	ENST00000354883	ENST00000480756		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3CDS	ENST00000336733	ENST00000331595		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3UTR	ENST00000336733	ENST00000480756		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
3UTR-3CDS	ENST00000536651	ENST00000331595		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
3UTR-3UTR	ENST00000536651	ENST00000480756		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3CDS	ENST00000413054	ENST00000331595		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3UTR	ENST00000413054	ENST00000480756		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3CDS	ENST00000484768	ENST00000331595		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
intron-3UTR	ENST00000484768	ENST00000480756		ChiTaRS3.1			BF930412	SLC25A26	chr3	66436618	-	BGN	chrX	152771406	+
3UTR-3UTR	ENST00000219022	ENST00000219022		ChiTaRS3.1			AW934842	OLFM4	chr13	53625480	-	OLFM4	chr13	53625225	+
intron-intron	ENST00000316399	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000316399	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000396356	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000352083	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528252	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000527619	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000528429	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000540693		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000337343		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000379274		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000261491		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000536612		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000498255		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000533658	ENST00000538674		ChiTaRS3.1			BF930562	SOX6	chr11	16594743	+	DGKH	chr13	42681634	+
intron-intron	ENST00000462484	ENST00000344773		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000462484	ENST00000379624		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000462484	ENST00000342045		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000462484	ENST00000379632		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000462484	ENST00000361704		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000462484	ENST00000603461		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000344773		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000379624		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000342045		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000379632		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000361704		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000334856	ENST00000603461		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000344773		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000379624		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000342045		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000379632		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000361704		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000460843	ENST00000603461		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000344773		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000379624		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000342045		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000379632		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000361704		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
intron-intron	ENST00000371394	ENST00000603461		ChiTaRS3.1			CK818072	EHMT1	chr9	140641906	-	BRE	chr2	28455873	-
3UTR-3UTR	ENST00000389682	ENST00000389682		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
3UTR-intron	ENST00000389682	ENST00000498545		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
3UTR-intron	ENST00000389682	ENST00000536142		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
3UTR-intron	ENST00000389682	ENST00000409193		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-3UTR	ENST00000498545	ENST00000389682		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000498545	ENST00000498545		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000498545	ENST00000536142		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000498545	ENST00000409193		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-3UTR	ENST00000536142	ENST00000389682		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000536142	ENST00000498545		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000536142	ENST00000536142		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000536142	ENST00000409193		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-3UTR	ENST00000409193	ENST00000389682		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000409193	ENST00000498545		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000409193	ENST00000536142		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-intron	ENST00000409193	ENST00000409193		ChiTaRS3.1			BM968532	TSN	chr2	122524699	-	TSN	chr2	122524143	+
intron-3CDS	ENST00000340666	ENST00000340666		ChiTaRS3.1			BF948432	SYN1	chrX	47466395	+	SYN1	chrX	47436857	-
intron-3CDS	ENST00000340666	ENST00000295987		ChiTaRS3.1			BF948432	SYN1	chrX	47466395	+	SYN1	chrX	47436857	-
intron-3CDS	ENST00000295987	ENST00000340666		ChiTaRS3.1			BF948432	SYN1	chrX	47466395	+	SYN1	chrX	47436857	-
intron-3CDS	ENST00000295987	ENST00000295987		ChiTaRS3.1			BF948432	SYN1	chrX	47466395	+	SYN1	chrX	47436857	-
intron-intron	ENST00000517956	ENST00000517956		ChiTaRS3.1			AW373672	FBXO32	chr8	124514565	-	FBXO32	chr8	124515875	-
intron-intron	ENST00000517956	ENST00000443022		ChiTaRS3.1			AW373672	FBXO32	chr8	124514565	-	FBXO32	chr8	124515875	-
intron-intron	ENST00000443022	ENST00000517956		ChiTaRS3.1			AW373672	FBXO32	chr8	124514565	-	FBXO32	chr8	124515875	-
intron-intron	ENST00000443022	ENST00000443022		ChiTaRS3.1			AW373672	FBXO32	chr8	124514565	-	FBXO32	chr8	124515875	-
intron-intron	ENST00000313949	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000313949	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000313949	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000313949	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371098	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371098	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371098	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371075	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371075	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371075	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371100	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371100	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371100	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371099	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371099	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371099	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371102	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371102	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371102	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000464624	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000464624	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000464624	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000306120	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306120	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000306120	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371095	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371095	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371095	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371085	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371085	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371085	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000354359	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000354359	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000354359	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000265620	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000265620	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000265620	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000306090	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000306090	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000306090	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000313949		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371081	ENST00000371098		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371075		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371100		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371099		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371102		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000464624		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000306120		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371095		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000371085		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000354359		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000265620		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-intron	ENST00000371081	ENST00000306090		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3UTR	ENST00000371081	ENST00000371081		ChiTaRS3.1			BF354702	GNAS	chr20	57476593	+	GNAS	chr20	57475136	+
intron-3CDS	ENST00000367288	ENST00000379987		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3CDS	ENST00000367288	ENST00000453617		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3CDS	ENST00000367288	ENST00000427316		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3CDS	ENST00000367288	ENST00000514622		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3CDS	ENST00000367288	ENST00000305572		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3CDS	ENST00000367288	ENST00000506666		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-intron	ENST00000367288	ENST00000513430		ChiTaRS3.1			BE835052	LMOD1	chr1	201867341	+	NPNT	chr4	106861267	-
intron-3UTR	ENST00000371828	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371828	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371828	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371802	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371802	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371856	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371856	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000347458	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000347458	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000340954	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000340954	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000371792	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000371792	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000356978		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000447653		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-intron	ENST00000360426	ENST00000555132		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000553542		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000360426	ENST00000544280		ChiTaRS3.1			CB161392	STAU1	chr20	47730461	+	CALM1	chr14	90871149	+
intron-3UTR	ENST00000606975	ENST00000354185		ChiTaRS3.1			AK093442	RPL23AP53	chr8	195550	+	DDX21	chr10	70743978	+
intron-intron	ENST00000338882	ENST00000338882		ChiTaRS3.1			AX786392	METTL24	chr6	110713803	-	METTL24	chr6	110734665	-
intron-intron	ENST00000338882	ENST00000490043		ChiTaRS3.1			AX786392	METTL24	chr6	110713803	-	METTL24	chr6	110734665	-
intron-intron	ENST00000490043	ENST00000338882		ChiTaRS3.1			AX786392	METTL24	chr6	110713803	-	METTL24	chr6	110734665	-
intron-intron	ENST00000490043	ENST00000490043		ChiTaRS3.1			AX786392	METTL24	chr6	110713803	-	METTL24	chr6	110734665	-
5CDS-3UTR	ENST00000341459	ENST00000341459		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
5CDS-intron	ENST00000341459	ENST00000482911		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
5CDS-intron	ENST00000341459	ENST00000449382		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
intron-3UTR	ENST00000482911	ENST00000341459		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
intron-intron	ENST00000482911	ENST00000482911		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
intron-intron	ENST00000482911	ENST00000449382		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
5CDS-3UTR	ENST00000449382	ENST00000341459		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
5CDS-intron	ENST00000449382	ENST00000482911		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
5CDS-intron	ENST00000449382	ENST00000449382		ChiTaRS3.1			BU674082	SLC24A5	chr15	48434294	+	SLC24A5	chr15	48434653	-
intron-3CDS	ENST00000304992	ENST00000389629		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-intron	ENST00000304992	ENST00000462276		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-3CDS	ENST00000572621	ENST00000389629		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-intron	ENST00000572621	ENST00000462276		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-3CDS	ENST00000575116	ENST00000389629		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-intron	ENST00000575116	ENST00000462276		ChiTaRS3.1			BI037412	PRPF8	chr17	1564320	+	RTF1	chr15	41767929	-
intron-3UTR	ENST00000376462	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000376462	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000376462	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000481700	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000481700	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000481700	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000458595	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000458595	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000458595	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376454	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376454	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376454	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000376452	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000376452	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000376452	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000430453	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000430453	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000430453	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000307544	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000307544	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000307544	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396446	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396446	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396446	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396445	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396445	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-3UTR	ENST00000396445	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376451	ENST00000323963		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376451	ENST00000440191		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
5CDS-3UTR	ENST00000376451	ENST00000356531		ChiTaRS3.1			BQ355782	KIAA1217	chr10	24833139	-	EIF4A2	chr3	186507348	+
intron-intron	ENST00000283558	ENST00000283558		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375630		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000487903		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375645		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000419448		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000283558		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375630		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000487903		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375645		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000419448		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000283558		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375630		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000487903		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375645		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000419448		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000283558		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375630		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000487903		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375645		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000419448		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000283558		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375630		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000487903		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375645		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000419448		ChiTaRS3.1			AA825862	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-3CDS	ENST00000349945	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000349945		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000432919		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000354436		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000567239		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000393742		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000566899		ChiTaRS3.1			AA700302	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3UTR	ENST00000389221	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000389221	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000389221	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000389221	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000389221	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000508903	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000508903	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000508903	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000508903	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000508903	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397462	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397462	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397462	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397462	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397462	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000391893	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000391893	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000391893	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000391893	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000391893	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000403703	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000403703	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000403703	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000403703	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000403703	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000248104	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000248104	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000248104	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000248104	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000248104	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397464	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397464	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397464	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000397464	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000397464	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000402641	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000402641	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000402641	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000402641	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000402641	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000301712	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000301712	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000301712	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000301712	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000301712	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000503648	ENST00000389221		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000508903		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000397462		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000503648	ENST00000391893		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000503648	ENST00000403703		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3UTR	ENST00000503648	ENST00000248104		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000397464		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000402641		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000301712		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-intron	ENST00000503648	ENST00000503648		ChiTaRS3.1			AI751242	UNKL	chr16	1414672	+	UNKL	chr16	1414630	-
intron-3CDS	ENST00000324331	ENST00000368874		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000324331	ENST00000271657		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000324331	ENST00000368875		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000324331	ENST00000368873		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000324331	ENST00000529142		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000324331	ENST00000368872		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000368874		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000271657		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000368875		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000368873		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000529142		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-3CDS	ENST00000274680	ENST00000368872		ChiTaRS3.1			AW889702	FARS2	chr6	5622938	+	PI4KB	chr1	151274741	-
intron-intron	ENST00000344686	ENST00000375664		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
intron-intron	ENST00000344686	ENST00000375646		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
intron-intron	ENST00000344686	ENST00000347934		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
intron-intron	ENST00000344686	ENST00000354911		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
intron-intron	ENST00000344686	ENST00000428935		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
intron-intron	ENST00000344686	ENST00000532233		ChiTaRS3.1			CN479132	MAP3K14	chr17	43346656	-	WAC	chr10	28846486	-
Frame-shit	ENST00000434457	ENST00000434457		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000434457	ENST00000602925		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000434457	ENST00000380432		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000602925	ENST00000434457		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000602925	ENST00000602925		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000602925	ENST00000380432		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000380432	ENST00000434457		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000380432	ENST00000602925		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
Frame-shit	ENST00000380432	ENST00000380432		ChiTaRS3.1			AA525272	DENND4C	chr9	19316837	+	DENND4C	chr9	19305349	+
intron-3UTR	ENST00000389834	ENST00000389834		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000389834	ENST00000448392		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000389834	ENST00000307216		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000389834	ENST00000568432		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000448392	ENST00000389834		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000448392	ENST00000448392		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000448392	ENST00000307216		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000448392	ENST00000568432		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000307216	ENST00000389834		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000307216	ENST00000448392		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000307216	ENST00000307216		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000307216	ENST00000568432		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000568432	ENST00000389834		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-3UTR	ENST00000568432	ENST00000448392		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000568432	ENST00000307216		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000568432	ENST00000568432		ChiTaRS3.1			BQ774122	TMEM87A	chr15	42503412	+	TMEM87A	chr15	42503686	-
intron-intron	ENST00000415912	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000415912	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000415912	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000357071	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000357071	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000374893	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000374893	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000436918	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000436918	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000264205	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000264205	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000517509		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000412946		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000520622		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000520590		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000523506		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000521336		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000520310		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000521507		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000523445		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000522845		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000520585		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-3UTR	ENST00000528294	ENST00000522673		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000528294	ENST00000519454		ChiTaRS3.1			AW390692	ECE1	chr1	21601020	-	TPT1-AS1	chr13	45965672	-
intron-intron	ENST00000285238	ENST00000421627		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000285238	ENST00000524065		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000515707	ENST00000421627		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000515707	ENST00000524065		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000427699	ENST00000421627		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000427699	ENST00000524065		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000510891	ENST00000421627		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-intron	ENST00000510891	ENST00000524065		ChiTaRS3.1			BQ302632	ABCC3	chr17	48761501	+	DLGAP2	chr8	1506271	-
intron-3UTR	ENST00000334956	ENST00000334956		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000334956	ENST00000539723		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000334956	ENST00000550549		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000334956	ENST00000538608		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000334956	ENST00000526746		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000539723	ENST00000334956		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000539723	ENST00000539723		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000539723	ENST00000550549		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000539723	ENST00000538608		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000539723	ENST00000526746		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000550549	ENST00000334956		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000550549	ENST00000539723		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000550549	ENST00000550549		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000550549	ENST00000538608		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000550549	ENST00000526746		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000538608	ENST00000334956		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000538608	ENST00000539723		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000538608	ENST00000550549		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000538608	ENST00000538608		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000538608	ENST00000526746		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000526746	ENST00000334956		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000526746	ENST00000539723		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-3UTR	ENST00000526746	ENST00000550549		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000526746	ENST00000538608		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
intron-intron	ENST00000526746	ENST00000526746		ChiTaRS3.1			BI253272	PARVA	chr11	12549397	-	PARVA	chr11	12549574	+
5UTR-intron	ENST00000398645	ENST00000398645		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000398645	ENST00000529006		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000398645	ENST00000526258		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000398645	ENST00000308783		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000398645	ENST00000530342		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000529006	ENST00000398645		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000529006	ENST00000529006		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000529006	ENST00000526258		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000529006	ENST00000308783		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
5UTR-intron	ENST00000529006	ENST00000530342		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000526258	ENST00000398645		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000526258	ENST00000529006		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000526258	ENST00000526258		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000526258	ENST00000308783		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000526258	ENST00000530342		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000308783	ENST00000398645		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000308783	ENST00000529006		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000308783	ENST00000526258		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000308783	ENST00000308783		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000308783	ENST00000530342		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000530342	ENST00000398645		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000530342	ENST00000529006		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000530342	ENST00000526258		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000530342	ENST00000308783		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000530342	ENST00000530342		ChiTaRS3.1			BE089222	KDM2A	chr11	66887436	-	KDM2A	chr11	66949363	-
intron-intron	ENST00000295522	ENST00000545260		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000545693		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000350537		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000346874		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374789		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374790		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374794		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374788		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000466092		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374776		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000340077		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000544292		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374773		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374768		ChiTaRS3.1			BQ025642	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000444376	ENST00000383018		ChiTaRS3.1			AF289572	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000444376	ENST00000493672		ChiTaRS3.1			AF289572	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000283179	ENST00000383018		ChiTaRS3.1			AF289572	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000283179	ENST00000493672		ChiTaRS3.1			AF289572	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000374531	ENST00000237536		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000374531	ENST00000279034		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000374531	ENST00000456801		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000374531	ENST00000357779		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000448454	ENST00000237536		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000448454	ENST00000279034		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000448454	ENST00000456801		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000448454	ENST00000357779		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000483909	ENST00000237536		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000483909	ENST00000279034		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000483909	ENST00000456801		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000483909	ENST00000357779		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000314527	ENST00000237536		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000314527	ENST00000279034		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000314527	ENST00000456801		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
intron-intron	ENST00000314527	ENST00000357779		ChiTaRS3.1			BF992642	PALM2	chr9	112690869	+	SOGA1	chr20	35471240	-
In-frame	ENST00000367584	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000367584		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000427704		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000305766		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000440869		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000367582		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000397980		ChiTaRS3.1			CA418242	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-intron	ENST00000429124	ENST00000429124		ChiTaRS3.1			CN287042	FTX	chrX	73494727	+	FTX	chrX	73495125	-
intron-intron	ENST00000366508	ENST00000373566		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000373563		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000409480		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000409547		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000409196		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000409451		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000482666		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000366508	ENST00000452341		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000373566		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000373563		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000409480		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000409547		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000409196		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000409451		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000482666		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000326225	ENST00000452341		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000373566		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000373563		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000409480		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000409547		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000409196		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000409451		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000482666		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000391829	ENST00000452341		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000373566		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000373563		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000409480		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000409547		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000409196		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000409451		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000482666		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-intron	ENST00000470300	ENST00000452341		ChiTaRS3.1			DB091102	AHCTF1	chr1	247041194	+	GIGYF2	chr2	233681467	+
intron-3UTR	ENST00000376896	ENST00000382151		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-3UTR	ENST00000376896	ENST00000266095		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-3UTR	ENST00000376896	ENST00000397500		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000376896	ENST00000336566		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000376896	ENST00000439502		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000376896	ENST00000478893		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-3UTR	ENST00000396204	ENST00000382151		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-3UTR	ENST00000396204	ENST00000266095		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-3UTR	ENST00000396204	ENST00000397500		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000396204	ENST00000336566		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000396204	ENST00000439502		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000396204	ENST00000478893		ChiTaRS3.1			BF996842	RORB	chr9	77209554	-	PISD	chr22	32014900	-
intron-intron	ENST00000383710	ENST00000381232		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000383710	ENST00000555818		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000383710	ENST00000358550		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000383710	ENST00000537413		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000383710	ENST00000554874		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000357948	ENST00000381232		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000357948	ENST00000555818		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000357948	ENST00000358550		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000357948	ENST00000537413		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000357948	ENST00000554874		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000283269	ENST00000381232		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000283269	ENST00000555818		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000283269	ENST00000358550		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000283269	ENST00000537413		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000283269	ENST00000554874		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000490353	ENST00000381232		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000490353	ENST00000555818		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000490353	ENST00000358550		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000490353	ENST00000537413		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000490353	ENST00000554874		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000462768	ENST00000381232		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000462768	ENST00000555818		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000462768	ENST00000358550		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000462768	ENST00000537413		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
intron-intron	ENST00000462768	ENST00000554874		ChiTaRS3.1			BF839582	CADPS	chr3	62474199	-	SIPA1L1	chr14	71947447	+
5CDS-5UTR	ENST00000264279	ENST00000518164		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
5CDS-intron	ENST00000264279	ENST00000521291		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
5CDS-5UTR	ENST00000264279	ENST00000396070		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
5CDS-5UTR	ENST00000264279	ENST00000287038		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
5CDS-5UTR	ENST00000264279	ENST00000523172		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
3UTR-5UTR	ENST00000467734	ENST00000518164		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
3UTR-intron	ENST00000467734	ENST00000521291		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
3UTR-5UTR	ENST00000467734	ENST00000396070		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
3UTR-5UTR	ENST00000467734	ENST00000287038		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
3UTR-5UTR	ENST00000467734	ENST00000523172		ChiTaRS3.1			BI334582	NOP58	chr2	203149104	-	RPL30	chr8	99057760	-
intron-3CDS	ENST00000316403	ENST00000316403		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000316403	ENST00000546343		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000316403	ENST00000560366		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000316403	ENST00000405140		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000316403	ENST00000523500		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000546343	ENST00000316403		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000546343	ENST00000546343		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000546343	ENST00000560366		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000546343	ENST00000405140		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000546343	ENST00000523500		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000560366	ENST00000316403		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000560366	ENST00000546343		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000560366	ENST00000560366		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000560366	ENST00000405140		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000560366	ENST00000523500		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000405140	ENST00000316403		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000405140	ENST00000546343		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000405140	ENST00000560366		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000405140	ENST00000405140		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000405140	ENST00000523500		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000523500	ENST00000316403		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000523500	ENST00000546343		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000523500	ENST00000560366		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000523500	ENST00000405140		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-3CDS	ENST00000523500	ENST00000523500		ChiTaRS3.1			BG896922	CLU	chr8	27457330	+	CLU	chr8	27456084	-
intron-intron	ENST00000374388	ENST00000559488		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374388	ENST00000571680		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374388	ENST00000435993		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374388	ENST00000560629		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374403	ENST00000559488		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374403	ENST00000571680		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374403	ENST00000435993		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000374403	ENST00000560629		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000485406	ENST00000559488		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000485406	ENST00000571680		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000485406	ENST00000435993		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000485406	ENST00000560629		ChiTaRS3.1			AI655822	KIF4A	chrX	69542274	+	ITGB3	chr17	45390435	-
intron-intron	ENST00000259455	ENST00000355621		ChiTaRS3.1			BE766562	GABBR2	chr9	101052890	-	UBE2H	chr7	129569478	+
intron-intron	ENST00000259455	ENST00000473814		ChiTaRS3.1			BE766562	GABBR2	chr9	101052890	-	UBE2H	chr7	129569478	+
intron-intron	ENST00000477471	ENST00000355621		ChiTaRS3.1			BE766562	GABBR2	chr9	101052890	-	UBE2H	chr7	129569478	+
intron-intron	ENST00000477471	ENST00000473814		ChiTaRS3.1			BE766562	GABBR2	chr9	101052890	-	UBE2H	chr7	129569478	+
intron-intron	ENST00000262325	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000262325	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000592545	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000592545	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000538556	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000538556	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000312678	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000312678	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000589344	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000589344	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000537622	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000537622	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000545922	ENST00000326793		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
intron-intron	ENST00000545922	ENST00000472860		ChiTaRS3.1			BM978892	AP2B1	chr17	34007971	-	ACAP2	chr3	195059318	+
Frame-shit	ENST00000356554	ENST00000356554		ChiTaRS3.1			BE832742	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
5CDS-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			BE832742	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-3CDS	ENST00000482811	ENST00000356554		ChiTaRS3.1			BE832742	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			BE832742	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-intron	ENST00000371421	ENST00000371421		ChiTaRS3.1			AK025002	ARRDC1	chr9	140506003	+	ARRDC1	chr9	140504283	+
intron-intron	ENST00000371421	ENST00000491911		ChiTaRS3.1			AK025002	ARRDC1	chr9	140506003	+	ARRDC1	chr9	140504283	+
3UTR-intron	ENST00000491911	ENST00000371421		ChiTaRS3.1			AK025002	ARRDC1	chr9	140506003	+	ARRDC1	chr9	140504283	+
3UTR-intron	ENST00000491911	ENST00000491911		ChiTaRS3.1			AK025002	ARRDC1	chr9	140506003	+	ARRDC1	chr9	140504283	+
intron-3UTR	ENST00000339208	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000339208	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000339208	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000346661	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000346661	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000346661	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000345615	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000345615	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000345615	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000502449	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000502449	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000502449	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000591288	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000591288	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000591288	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000394378	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000394378	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000394378	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000585472	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000585472	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000585472	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000588194	ENST00000339208		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-3UTR	ENST00000588194	ENST00000346661		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000345615		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000502449		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000591288		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000394378		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000585472		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000588194	ENST00000588194		ChiTaRS3.1			AI863262	SYNRG	chr17	35877063	+	SYNRG	chr17	35875852	+
intron-intron	ENST00000260385	ENST00000356327		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000260385	ENST00000351298		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000260385	ENST00000342215		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000260385	ENST00000340989		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000260385	ENST00000497307		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000338376	ENST00000356327		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000338376	ENST00000351298		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000338376	ENST00000342215		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000338376	ENST00000340989		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000338376	ENST00000497307		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000558560	ENST00000356327		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000558560	ENST00000351298		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000558560	ENST00000342215		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000558560	ENST00000340989		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
intron-intron	ENST00000558560	ENST00000497307		ChiTaRS3.1			AW862982	RMDN3	chr15	41028455	+	PLD1	chr3	171445323	+
Frame-shit	ENST00000368879	ENST00000368879		ChiTaRS3.1			AA639912	ZNF687	chr1	151260864	-	ZNF687	chr1	151261938	-
intron-intron	ENST00000375765	ENST00000375765		ChiTaRS3.1			CA503302	DIRAS2	chr9	93403504	+	DIRAS2	chr9	93403591	-
intron-intron	ENST00000393805	ENST00000393805		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000377332		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000525834		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000484728		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000393808		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000393805		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000377332		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000525834		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000484728		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000393808		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000393805		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000377332		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000525834		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000484728		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000393808		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000393805		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000377332		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000525834		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000484728		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000393808		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000393805		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000377332		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000525834		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000484728		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000393808		ChiTaRS3.1			BF933062	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-3CDS	ENST00000348657	ENST00000348657		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000348657	ENST00000252115		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000348657	ENST00000339677		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000348657	ENST00000451060		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000348657	ENST00000491021		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000252115	ENST00000348657		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000252115	ENST00000252115		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000252115	ENST00000339677		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000252115	ENST00000451060		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000252115	ENST00000491021		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000339677	ENST00000348657		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000339677	ENST00000252115		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000339677	ENST00000339677		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000339677	ENST00000451060		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000339677	ENST00000491021		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000451060	ENST00000348657		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000451060	ENST00000252115		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000451060	ENST00000339677		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000451060	ENST00000451060		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000451060	ENST00000491021		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000491021	ENST00000348657		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3CDS	ENST00000491021	ENST00000252115		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000491021	ENST00000339677		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000491021	ENST00000451060		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-intron	ENST00000491021	ENST00000491021		ChiTaRS3.1			AI348542	POLDIP3	chr22	42981916	+	POLDIP3	chr22	42981877	-
intron-3UTR	ENST00000309993	ENST00000309993		ChiTaRS3.1			AW752782	MSL2	chr3	135871332	+	MSL2	chr3	135869678	+
intron-3UTR	ENST00000309993	ENST00000434835		ChiTaRS3.1			AW752782	MSL2	chr3	135871332	+	MSL2	chr3	135869678	+
intron-3UTR	ENST00000434835	ENST00000309993		ChiTaRS3.1			AW752782	MSL2	chr3	135871332	+	MSL2	chr3	135869678	+
intron-3UTR	ENST00000434835	ENST00000434835		ChiTaRS3.1			AW752782	MSL2	chr3	135871332	+	MSL2	chr3	135869678	+
3UTR-3CDS	ENST00000356509	ENST00000356509		ChiTaRS3.1			CN478632	GMNN	chr6	24786093	-	GMNN	chr6	24785923	+
3UTR-3CDS	ENST00000356509	ENST00000230056		ChiTaRS3.1			CN478632	GMNN	chr6	24786093	-	GMNN	chr6	24785923	+
3UTR-3CDS	ENST00000230056	ENST00000356509		ChiTaRS3.1			CN478632	GMNN	chr6	24786093	-	GMNN	chr6	24785923	+
3UTR-3CDS	ENST00000230056	ENST00000230056		ChiTaRS3.1			CN478632	GMNN	chr6	24786093	-	GMNN	chr6	24785923	+
In-frame	ENST00000314358	ENST00000314358		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000314358	ENST00000394866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000314358	ENST00000542866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
5CDS-intron	ENST00000314358	ENST00000508386		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000394866	ENST00000314358		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000394866	ENST00000394866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000394866	ENST00000542866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
5CDS-intron	ENST00000394866	ENST00000508386		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000542866	ENST00000314358		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000542866	ENST00000394866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
In-frame	ENST00000542866	ENST00000542866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
5CDS-intron	ENST00000542866	ENST00000508386		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
intron-3CDS	ENST00000508386	ENST00000314358		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
intron-3CDS	ENST00000508386	ENST00000394866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
intron-3CDS	ENST00000508386	ENST00000542866		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
intron-intron	ENST00000508386	ENST00000508386		ChiTaRS3.1			BF346562	KDM3B	chr5	137766009	-	KDM3B	chr5	137766042	+
intron-intron	ENST00000005558	ENST00000360689		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000394586		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000557164		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000394585		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000358307		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000417683		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000005558	ENST00000554765		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000360689		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000394586		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000557164		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000394585		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000358307		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000417683		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000403825	ENST00000554765		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000360689		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000394586		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000557164		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000394585		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000358307		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000417683		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000429071	ENST00000554765		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000360689		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000394586		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000557164		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000394585		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000358307		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000417683		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
3UTR-intron	ENST00000535603	ENST00000554765		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000360689		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000394586		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000557164		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000394585		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000358307		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000417683		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-intron	ENST00000486688	ENST00000554765		ChiTaRS3.1			AW361302	IFRD1	chr7	112115756	+	FUT8	chr14	66166618	+
intron-3UTR	ENST00000240922	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000240922	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000477813	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000477813	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000497525	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497525	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000497255	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000497255	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000493454	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493454	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000493900	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000493900	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-3UTR	ENST00000467022	ENST00000240922		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000477813		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000497525		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000497255		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000493454		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000493900		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
intron-intron	ENST00000467022	ENST00000467022		ChiTaRS3.1			AW582742	NAA50	chr3	113439148	-	NAA50	chr3	113439024	+
Frame-shit	ENST00000379388	ENST00000379388		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000379388	ENST00000484210		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000379388	ENST00000541134		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-3CDS	ENST00000484210	ENST00000379388		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-intron	ENST00000484210	ENST00000484210		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
intron-intron	ENST00000484210	ENST00000541134		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
Frame-shit	ENST00000541134	ENST00000379388		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000541134	ENST00000484210		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
5CDS-intron	ENST00000541134	ENST00000541134		ChiTaRS3.1			AA603352	HIVEP1	chr6	12162120	+	HIVEP1	chr6	12162051	-
3UTR-3UTR	ENST00000538205	ENST00000538205		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000538205	ENST00000256412		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000538205	ENST00000522298		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000538205	ENST00000519953		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000256412	ENST00000538205		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000256412	ENST00000256412		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000256412	ENST00000522298		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000256412	ENST00000519953		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000522298	ENST00000538205		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000522298	ENST00000256412		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000522298	ENST00000522298		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000522298	ENST00000519953		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000519953	ENST00000538205		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000519953	ENST00000256412		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000519953	ENST00000522298		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
3UTR-3UTR	ENST00000519953	ENST00000519953		ChiTaRS3.1			BP423822	ADAMDEC1	chr8	24263223	+	ADAMDEC1	chr8	24263332	-
intron-intron	ENST00000511685	ENST00000361111		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000359758		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000297498		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000458665		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000528168		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000398462		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000511685	ENST00000317900		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000361111		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000359758		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000297498		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000458665		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000528168		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000398462		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000406950	ENST00000317900		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000361111		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000359758		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000297498		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000458665		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000528168		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000398462		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-intron	ENST00000502950	ENST00000317900		ChiTaRS3.1			AL133652	TENM3	chr4	183354105	-	SPAG11B	chr8	7705597	+
intron-3UTR	ENST00000329421	ENST00000329421		ChiTaRS3.1			BF974652	MARCKSL1	chr1	32799795	+	MARCKSL1	chr1	32799729	-
intron-intron	ENST00000398576	ENST00000278426		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000398576	ENST00000528450		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000398576	ENST00000533515		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000278426		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000528450		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000533515		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000278426		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000528450		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000533515		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000278426		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000528450		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000533515		ChiTaRS3.1			AI283572	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000395246	ENST00000395246		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000504701		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000503291		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000360515		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000505065		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000395246		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000504701		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000503291		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000360515		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000505065		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000395246		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000504701		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000503291		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000360515		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000505065		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000395246		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000504701		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000503291		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000360515		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000505065		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000395246		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000504701		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000503291		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000360515		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000505065		ChiTaRS3.1			BE143612	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000297423	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000297423	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000297423	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000297423	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000297423	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000297423	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518074	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000541342	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000521214	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000517693	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000297423		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000518074		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000541342		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000521214		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000517693		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-intron	ENST00000518060	ENST00000518060		ChiTaRS3.1			BI054152	SPIDR	chr8	48650023	+	SPIDR	chr8	48649705	-
intron-3CDS	ENST00000413834	ENST00000225296		ChiTaRS3.1			AA580962	ATP5J2-PTCD1	chr7	99054841	-	DHX33	chr17	5364376	+
intron-intron	ENST00000413834	ENST00000433302		ChiTaRS3.1			AA580962	ATP5J2-PTCD1	chr7	99054841	-	DHX33	chr17	5364376	+
intron-3CDS	ENST00000437572	ENST00000225296		ChiTaRS3.1			AA580962	ATP5J2-PTCD1	chr7	99054841	-	DHX33	chr17	5364376	+
intron-intron	ENST00000437572	ENST00000433302		ChiTaRS3.1			AA580962	ATP5J2-PTCD1	chr7	99054841	-	DHX33	chr17	5364376	+
intron-intron	ENST00000545844	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000545844	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000567887	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000372915	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000361689	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000539005	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000317713	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000564288	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000289893	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000536367	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000484793	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000602421	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000416301		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000451364		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000449419		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000452942		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000452728		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000414006		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000454638		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000458228		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000427300		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000449197		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000427846		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
intron-intron	ENST00000476350	ENST00000444375		ChiTaRS3.1			BU561022	MACF1	chr1	39584989	-	ENTPD1-AS1	chr10	97744263	-
3UTR-3UTR	ENST00000343150	ENST00000343150		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000343150	ENST00000340342		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000343150	ENST00000495822		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-intron	ENST00000343150	ENST00000342020		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000340342	ENST00000343150		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000340342	ENST00000340342		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000340342	ENST00000495822		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-intron	ENST00000340342	ENST00000342020		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000495822	ENST00000343150		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000495822	ENST00000340342		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-3UTR	ENST00000495822	ENST00000495822		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
3UTR-intron	ENST00000495822	ENST00000342020		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
intron-3UTR	ENST00000342020	ENST00000343150		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
intron-3UTR	ENST00000342020	ENST00000340342		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
intron-3UTR	ENST00000342020	ENST00000495822		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
intron-intron	ENST00000342020	ENST00000342020		ChiTaRS3.1			CB242452	CTSL	chr9	90346150	-	CTSL	chr9	90346077	+
intron-5UTR	ENST00000392503	ENST00000306024		ChiTaRS3.1			BG034592	ZACN	chr17	74077842	-	LSM3	chr3	14220341	+
5CDS-5UTR	ENST00000334586	ENST00000306024		ChiTaRS3.1			BG034592	ZACN	chr17	74077842	-	LSM3	chr3	14220341	+
3UTR-3UTR	ENST00000479606	ENST00000479606		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
3UTR-3UTR	ENST00000479606	ENST00000215739		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
3UTR-3UTR	ENST00000479606	ENST00000389355		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000479606		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000215739		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000389355		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000479606		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000215739		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000389355		ChiTaRS3.1			BM856302	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
3UTR-intron	ENST00000528780	ENST00000280527		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000528780	ENST00000473403		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000328221	ENST00000280527		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000328221	ENST00000473403		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000408968	ENST00000280527		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000408968	ENST00000473403		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000525554	ENST00000280527		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000525554	ENST00000473403		ChiTaRS3.1			AI991482	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000384994	ENST00000400921		ChiTaRS3.1			BF989082	NEAT1	chr11	65190316	-	PRKCZ	chr1	2080287	+
intron-intron	ENST00000384994	ENST00000400920		ChiTaRS3.1			BF989082	NEAT1	chr11	65190316	-	PRKCZ	chr1	2080287	+
intron-intron	ENST00000384994	ENST00000479263		ChiTaRS3.1			BF989082	NEAT1	chr11	65190316	-	PRKCZ	chr1	2080287	+
intron-intron	ENST00000239944	ENST00000280979		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000239944	ENST00000557354		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000239944	ENST00000557272		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000239944	ENST00000554449		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000479209	ENST00000280979		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000479209	ENST00000557354		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000479209	ENST00000557272		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000479209	ENST00000554449		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000487153	ENST00000280979		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000487153	ENST00000557354		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000487153	ENST00000557272		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000487153	ENST00000554449		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000491660	ENST00000280979		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000491660	ENST00000557354		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000491660	ENST00000557272		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000491660	ENST00000554449		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000490945	ENST00000280979		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000490945	ENST00000557354		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000490945	ENST00000557272		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-intron	ENST00000490945	ENST00000554449		ChiTaRS3.1			BG388672	SERP1	chr3	150261661	-	AKAP6	chr14	32924283	-
intron-3UTR	ENST00000393810	ENST00000393810		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393810	ENST00000495706		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393810	ENST00000393812		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393810	ENST00000537814		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393810	ENST00000538577		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-3UTR	ENST00000495706	ENST00000393810		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000495706	ENST00000495706		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000495706	ENST00000393812		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000495706	ENST00000537814		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000495706	ENST00000538577		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-3UTR	ENST00000393812	ENST00000393810		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393812	ENST00000495706		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393812	ENST00000393812		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393812	ENST00000537814		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000393812	ENST00000538577		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-3UTR	ENST00000537814	ENST00000393810		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000537814	ENST00000495706		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000537814	ENST00000393812		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000537814	ENST00000537814		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000537814	ENST00000538577		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-3UTR	ENST00000538577	ENST00000393810		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000538577	ENST00000495706		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000538577	ENST00000393812		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000538577	ENST00000537814		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-5UTR	ENST00000538577	ENST00000538577		ChiTaRS3.1			BF351412	SLC35B2	chr6	44222665	+	SLC35B2	chr6	44223002	-
intron-intron	ENST00000534863	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000534863	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000470751	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000272902	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000383843	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000458465	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000534863		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000470751		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000405420	ENST00000272902		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000383843		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000458465		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000405420		ChiTaRS3.1			AI127082	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000356842	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000356842	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000356842	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000356842	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000356842	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000359629	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000359629	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000359629	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000359629	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000359629	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000538214	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000538214	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000538214	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000538214	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000538214	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000537768	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000537768	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000537768	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000537768	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000537768	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000335712	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000335712	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000335712	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000335712	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000335712	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000477659	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000477659	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000477659	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000477659	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000477659	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000358510	ENST00000464978		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000358510	ENST00000369556		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000358510	ENST00000544441		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3UTR	ENST00000358510	ENST00000369552		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-intron	ENST00000358510	ENST00000369557		ChiTaRS3.1			BF757732	BCL11A	chr2	60695925	+	SLC35A1	chr6	88221676	+
intron-3CDS	ENST00000388962	ENST00000388962		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000388962	ENST00000550948		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000388962	ENST00000228463		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000388962		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000550948		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000228463		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000388962		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000550948		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000228463		ChiTaRS3.1			BF510422	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-intron	ENST00000532456	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000532456	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000532456	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000532456	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000532456	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000532456	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000532456	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000532456	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000539648	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000539648	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000539648	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000539648	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000539648	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000539648	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000539648	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000539648	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000528499	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000528499	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000528499	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000528499	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000528499	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000528499	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000528499	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000528499	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000263574	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000263574	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000263574	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000263574	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000263574	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000263574	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000263574	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000263574	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000345598	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000345598	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000345598	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000345598	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000345598	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-intron	ENST00000345598	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000345598	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3UTR	ENST00000345598	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000338167	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000338167	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000338167	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000338167	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000338167	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000338167	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000338167	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000338167	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000278756	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000278756	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000278756	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000278756	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000278756	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000278756	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000278756	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000278756	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000543137	ENST00000532456		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000543137	ENST00000539648		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000543137	ENST00000528499		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000543137	ENST00000263574		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000543137	ENST00000345598		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-intron	ENST00000543137	ENST00000338167		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000543137	ENST00000278756		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
3UTR-3UTR	ENST00000543137	ENST00000543137		ChiTaRS3.1			AI985022	APLP2	chr11	130014124	-	APLP2	chr11	130014332	+
intron-3CDS	ENST00000477973	ENST00000324262		ChiTaRS3.1			AA367702	RYBP	chr3	72475567	-	CNDP2	chr18	72168680	+
intron-3CDS	ENST00000477973	ENST00000579847		ChiTaRS3.1			AA367702	RYBP	chr3	72475567	-	CNDP2	chr18	72168680	+
intron-intron	ENST00000477973	ENST00000580229		ChiTaRS3.1			AA367702	RYBP	chr3	72475567	-	CNDP2	chr18	72168680	+
intron-intron	ENST00000477973	ENST00000324301		ChiTaRS3.1			AA367702	RYBP	chr3	72475567	-	CNDP2	chr18	72168680	+
intron-3CDS	ENST00000357166	ENST00000375251		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3CDS	ENST00000357166	ENST00000375249		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3UTR	ENST00000357166	ENST00000466976		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3CDS	ENST00000371064	ENST00000375251		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3CDS	ENST00000371064	ENST00000375249		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3UTR	ENST00000371064	ENST00000466976		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3CDS	ENST00000491039	ENST00000375251		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3CDS	ENST00000491039	ENST00000375249		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
intron-3UTR	ENST00000491039	ENST00000466976		ChiTaRS3.1			BF154572	ZDHHC9	chrX	128957697	+	HABP4	chr9	99250465	-
3UTR-intron	ENST00000296792	ENST00000250457		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
3UTR-intron	ENST00000296792	ENST00000553215		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
3UTR-intron	ENST00000296792	ENST00000547327		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
3UTR-intron	ENST00000296792	ENST00000557521		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000543251	ENST00000250457		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000543251	ENST00000553215		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000543251	ENST00000547327		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000543251	ENST00000557521		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000508491	ENST00000250457		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000508491	ENST00000553215		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000508491	ENST00000547327		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
intron-intron	ENST00000508491	ENST00000557521		ChiTaRS3.1			BQ299972	UTP15	chr5	72876585	-	EGLN3	chr14	34410622	+
In-frame	ENST00000534358	ENST00000371730		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
In-frame	ENST00000534358	ENST00000371733		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
5CDS-intron	ENST00000534358	ENST00000396122		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
5CDS-intron	ENST00000534358	ENST00000493793		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
In-frame	ENST00000389506	ENST00000371730		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
In-frame	ENST00000389506	ENST00000371733		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
5CDS-intron	ENST00000389506	ENST00000396122		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
5CDS-intron	ENST00000389506	ENST00000493793		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-3CDS	ENST00000354520	ENST00000371730		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-3CDS	ENST00000354520	ENST00000371733		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-intron	ENST00000354520	ENST00000396122		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-intron	ENST00000354520	ENST00000493793		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-3CDS	ENST00000420751	ENST00000371730		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-3CDS	ENST00000420751	ENST00000371733		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-intron	ENST00000420751	ENST00000396122		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
intron-intron	ENST00000420751	ENST00000493793		ChiTaRS3.1			AY187922	KMT2A	chr11	118355690	+	EPS15	chr1	51946988	-
Frame-shit	ENST00000361138	ENST00000361138		ChiTaRS3.1			BE835242	SMC5	chr9	72913101	+	SMC5	chr9	72895682	+
5CDS-intron	ENST00000361138	ENST00000471372		ChiTaRS3.1			BE835242	SMC5	chr9	72913101	+	SMC5	chr9	72895682	+
intron-3CDS	ENST00000471372	ENST00000361138		ChiTaRS3.1			BE835242	SMC5	chr9	72913101	+	SMC5	chr9	72895682	+
intron-intron	ENST00000471372	ENST00000471372		ChiTaRS3.1			BE835242	SMC5	chr9	72913101	+	SMC5	chr9	72895682	+
5CDS-intron	ENST00000379540	ENST00000360909		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379540	ENST00000351081		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379540	ENST00000395125		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379540	ENST00000556135		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379540	ENST00000553966		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379521	ENST00000360909		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379521	ENST00000351081		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379521	ENST00000395125		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379521	ENST00000556135		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000379521	ENST00000553966		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000318524	ENST00000360909		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000318524	ENST00000351081		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000318524	ENST00000395125		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000318524	ENST00000556135		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
5CDS-intron	ENST00000318524	ENST00000553966		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-intron	ENST00000463421	ENST00000360909		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-intron	ENST00000463421	ENST00000351081		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-intron	ENST00000463421	ENST00000395125		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-intron	ENST00000463421	ENST00000556135		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-intron	ENST00000463421	ENST00000553966		ChiTaRS3.1			BG003552	NFX1	chr9	33294715	+	DAAM1	chr14	59662872	+
intron-3UTR	ENST00000368026	ENST00000368026		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000289779		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000537746		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000368026	ENST00000472573		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000289779	ENST00000368026		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000289779		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000537746		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000289779	ENST00000472573		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000537746	ENST00000368026		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000289779		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000537746		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000537746	ENST00000472573		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3UTR	ENST00000472573	ENST00000368026		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000289779		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000537746		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-intron	ENST00000472573	ENST00000472573		ChiTaRS3.1			AW006412	F11R	chr1	160967812	+	F11R	chr1	160967521	+
intron-3CDS	ENST00000440854	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000440854	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000440854	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000440854	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000440854	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000359715	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000359715	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000359715	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000359715	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000359715	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000485858	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000485858	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000485858	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000485858	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000485858	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000324228	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000324228	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000324228	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000324228	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000324228	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000609142	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000609142	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000609142	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000609142	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000609142	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000607873	ENST00000393533		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000607873	ENST00000372814		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000607873	ENST00000351030		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3CDS	ENST00000607873	ENST00000604420		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000535026		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000448249		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000393527		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000434106		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000546203		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000372791		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000372807		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-intron	ENST00000607873	ENST00000444119		ChiTaRS3.1			BI012132	ARFRP1	chr20	62338016	+	ODF2	chr9	131233661	+
intron-3UTR	ENST00000561062	ENST00000367279		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000561062	ENST00000309017		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000561062	ENST00000308986		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000561062	ENST00000544762		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000561062	ENST00000543735		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000561062	ENST00000492977		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000358583	ENST00000367279		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000358583	ENST00000309017		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000358583	ENST00000308986		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000358583	ENST00000544762		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000358583	ENST00000543735		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000358583	ENST00000492977		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000300515	ENST00000367279		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000300515	ENST00000309017		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-3UTR	ENST00000300515	ENST00000308986		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000300515	ENST00000544762		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000300515	ENST00000543735		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000300515	ENST00000492977		ChiTaRS3.1			CB219922	GOLGA6L9	chr15	82822761	-	PTPN7	chr1	202116297	+
intron-intron	ENST00000533076	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000533076		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000531974		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000362021		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000354884		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000524928		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000529740		ChiTaRS3.1			AW851732	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-3CDS	ENST00000228740	ENST00000321153		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000228740	ENST00000532004		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000228740	ENST00000530797		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3CDS	ENST00000552789	ENST00000321153		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000552789	ENST00000532004		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000552789	ENST00000530797		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3CDS	ENST00000413268	ENST00000321153		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000413268	ENST00000532004		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000413268	ENST00000530797		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3CDS	ENST00000548375	ENST00000321153		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000548375	ENST00000532004		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000548375	ENST00000530797		ChiTaRS3.1			BQ335002	LTA4H	chr12	96394856	-	RPLP2	chr11	812822	-
intron-3UTR	ENST00000371224	ENST00000458501		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000371224	ENST00000379644		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000371224	ENST00000297798		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000371224	ENST00000521576		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000371221	ENST00000458501		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000371221	ENST00000379644		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000371221	ENST00000297798		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000371221	ENST00000521576		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000483788	ENST00000458501		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000483788	ENST00000379644		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000483788	ENST00000297798		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-intron	ENST00000483788	ENST00000521576		ChiTaRS3.1			BG959752	ALDH18A1	chr10	97373750	+	HGSNAT	chr8	43056307	+
intron-3UTR	ENST00000526180	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000526180	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000526180	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000526180	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000526180	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533280	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533280	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533280	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533280	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000525823	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000525823	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000525823	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000525823	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533475	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533475	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533475	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533475	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000527950	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000527950	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000527950	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000527950	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000227251	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000227251	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000227251	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000227251	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000531198	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000531198	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000531198	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000531198	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000389221		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000508903		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533971	ENST00000397462		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000391893		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000403703		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000248104		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000397464		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000533971	ENST00000402641		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533971	ENST00000301712		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-intron	ENST00000533971	ENST00000503648		ChiTaRS3.1			BI041332	CRYAB	chr11	111782492	+	UNKL	chr16	1416195	-
intron-3UTR	ENST00000298310	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000298310	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000298310	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000298310	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000298310	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000382135	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000382135	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000382135	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000382135	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000382135	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000545773	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000545773	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000545773	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000545773	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000545773	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556925	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556925	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556925	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000556925	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000556925	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000546046	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000546046	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000546046	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000546046	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000546046	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556672	ENST00000261837		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556672	ENST00000396335		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-3UTR	ENST00000556672	ENST00000358784		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-5UTR	ENST00000556672	ENST00000559348		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000556672	ENST00000560116		ChiTaRS3.1			BQ338732	NEMF	chr14	50300162	-	GNB5	chr15	52414427	+
intron-intron	ENST00000379540	ENST00000346672		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000360962		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000527634		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000540737		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000532565		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000525449		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379540	ENST00000527368		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000346672		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000360962		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000527634		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000540737		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000532565		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000525449		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000379521	ENST00000527368		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000346672		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000360962		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000527634		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000540737		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000532565		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000525449		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000318524	ENST00000527368		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000346672		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000360962		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000527634		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000540737		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000532565		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000525449		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-intron	ENST00000463421	ENST00000527368		ChiTaRS3.1			BF814712	NFX1	chr9	33344931	+	C11orf80	chr11	66608055	-
intron-3CDS	ENST00000330387	ENST00000330387		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000330387	ENST00000456390		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000330387	ENST00000452463		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000330387	ENST00000458726		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000330387	ENST00000468127		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000456390	ENST00000330387		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000456390	ENST00000456390		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000456390	ENST00000452463		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000456390	ENST00000458726		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000456390	ENST00000468127		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000452463	ENST00000330387		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000452463	ENST00000456390		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000452463	ENST00000452463		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000452463	ENST00000458726		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000452463	ENST00000468127		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000458726	ENST00000330387		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000458726	ENST00000456390		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000458726	ENST00000452463		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000458726	ENST00000458726		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000458726	ENST00000468127		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000468127	ENST00000330387		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-3CDS	ENST00000468127	ENST00000456390		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000468127	ENST00000452463		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000468127	ENST00000458726		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
intron-intron	ENST00000468127	ENST00000468127		ChiTaRS3.1			AA001672	CREB3L2	chr7	137585856	+	CREB3L2	chr7	137569871	+
In-frame	ENST00000388825	ENST00000388825		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
5CDS-3UTR	ENST00000388825	ENST00000521722		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
5CDS-intron	ENST00000388825	ENST00000517973		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
intron-3CDS	ENST00000521722	ENST00000388825		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
intron-3UTR	ENST00000521722	ENST00000521722		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
intron-intron	ENST00000521722	ENST00000517973		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
Frame-shit	ENST00000517973	ENST00000388825		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
5CDS-3UTR	ENST00000517973	ENST00000521722		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
5CDS-intron	ENST00000517973	ENST00000517973		ChiTaRS3.1			BF878552	GPX3	chr5	150407052	+	GPX3	chr5	150404980	-
intron-intron	ENST00000313949	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000313949	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371098	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371098	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371075	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371075	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371100	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371100	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371099	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371099	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371102	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371102	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000464624	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000464624	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000306120	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000306120	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371095	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371095	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371085	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371085	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000354359	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000354359	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000265620	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000265620	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000306090	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000306090	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371081	ENST00000389032		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000371081	ENST00000539577		ChiTaRS3.1			AB023182	GNAS	chr20	57472211	-	STK38L	chr12	27397078	+
intron-intron	ENST00000425217	ENST00000394945		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000425217	ENST00000282223		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000425217	ENST00000509978		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000339824	ENST00000394945		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000339824	ENST00000282223		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000339824	ENST00000509978		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000302438	ENST00000394945		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000302438	ENST00000282223		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000302438	ENST00000509978		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000545002	ENST00000394945		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000545002	ENST00000282223		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000545002	ENST00000509978		ChiTaRS3.1			BF947472	KSR2	chr12	118125413	+	SPOCK1	chr5	136798572	-
intron-intron	ENST00000294507	ENST00000462705		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000393785		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000481632		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000471418		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000357258		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000464560		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000488663		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000294507	ENST00000474710		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000462705		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000393785		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000481632		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000471418		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000357258		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000464560		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000488663		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
intron-intron	ENST00000476492	ENST00000474710		ChiTaRS3.1			BE816402	LAPTM5	chr1	31211929	-	ZBTB20	chr3	114342639	+
3UTR-intron	ENST00000367866	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367866	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000452019	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000429375	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367865	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000541643	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000420254	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000367866		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000452019		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000429375		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000367865		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000541643		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000420254		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
3UTR-intron	ENST00000367862	ENST00000367862		ChiTaRS3.1			DA179732	POU2F1	chr1	167387052	+	POU2F1	chr1	167298280	+
intron-intron	ENST00000379374	ENST00000412145		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000379374	ENST00000446349		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000379374	ENST00000374541		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000379374	ENST00000262539		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000379374	ENST00000394827		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000379374	ENST00000497739		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000412145		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000446349		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000374541		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000262539		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000394827		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000537599	ENST00000497739		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000412145		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000446349		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000374541		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000262539		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000394827		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000535894	ENST00000497739		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000412145		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000446349		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000374541		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000262539		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000394827		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000418858	ENST00000497739		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000412145		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000446349		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000374541		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000262539		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000394827		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-intron	ENST00000475778	ENST00000497739		ChiTaRS3.1			CV374032	PHEX	chrX	22231832	-	PTPN3	chr9	112215998	-
intron-3CDS	ENST00000368547	ENST00000377560		ChiTaRS3.1			AA843712	ECHS1	chr10	135176045	+	HECTD4	chr12	112757052	+
intron-5UTR	ENST00000368547	ENST00000430131		ChiTaRS3.1			AA843712	ECHS1	chr10	135176045	+	HECTD4	chr12	112757052	+
intron-5UTR	ENST00000368547	ENST00000550722		ChiTaRS3.1			AA843712	ECHS1	chr10	135176045	+	HECTD4	chr12	112757052	+
intron-intron	ENST00000368547	ENST00000549141		ChiTaRS3.1			AA843712	ECHS1	chr10	135176045	+	HECTD4	chr12	112757052	+
5CDS-3UTR	ENST00000262124	ENST00000262124		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-3UTR	ENST00000262124	ENST00000399892		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-intron	ENST00000262124	ENST00000592582		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-3UTR	ENST00000399892	ENST00000262124		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-3UTR	ENST00000399892	ENST00000399892		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-intron	ENST00000399892	ENST00000592582		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
intron-3UTR	ENST00000592582	ENST00000262124		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
intron-3UTR	ENST00000592582	ENST00000399892		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
intron-intron	ENST00000592582	ENST00000592582		ChiTaRS3.1			AA559852	SEH1L	chr18	12987531	+	SEH1L	chr18	12987439	-
5CDS-intron	ENST00000389757	ENST00000378993		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
5CDS-intron	ENST00000389757	ENST00000302196		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
5CDS-intron	ENST00000389759	ENST00000378993		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
5CDS-intron	ENST00000389759	ENST00000302196		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
intron-intron	ENST00000495123	ENST00000378993		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
intron-intron	ENST00000495123	ENST00000302196		ChiTaRS3.1			BQ340532	PKP4	chr2	159530418	+	IL1RAPL1	chrX	29735564	-
Frame-shit	ENST00000339362	ENST00000339362		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000261908		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000558964		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000560262		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000339362	ENST00000560352		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000339362		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000261908		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000558964		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000560262		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000261908	ENST00000560352		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000339362		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000261908		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000558964		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000560262		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000558964	ENST00000560352		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000339362		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000261908		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000558964		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000560262		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000560262	ENST00000560352		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000339362		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000261908		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000558964		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000560262		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-intron	ENST00000560352	ENST00000560352		ChiTaRS3.1			AA578152	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
intron-5UTR	ENST00000316084	ENST00000316084		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-intron	ENST00000316084	ENST00000486733		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-5UTR	ENST00000316084	ENST00000373626		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-5UTR	ENST00000486733	ENST00000316084		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-intron	ENST00000486733	ENST00000486733		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-5UTR	ENST00000486733	ENST00000373626		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-5UTR	ENST00000373626	ENST00000316084		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-intron	ENST00000373626	ENST00000486733		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-5UTR	ENST00000373626	ENST00000373626		ChiTaRS3.1			BF446002	RPS4X	chrX	71492534	+	RPS4X	chrX	71497068	-
intron-3UTR	ENST00000376389	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000376389	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000376389	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000456573	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000456573	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000456573	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000470643	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000470643	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000470643	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000420604	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000420604	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000420604	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000436822	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000436822	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000436822	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000492441	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000492441	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000492441	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000383382	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000383382	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000383382	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000460694	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000460694	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000460694	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000553223	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000553223	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000553223	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000470163	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000470163	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000470163	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000383562	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000383562	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000383562	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000496175	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000496175	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000496175	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000490802	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000490802	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000490802	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000430843	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000430843	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000430843	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000444632	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000444632	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000444632	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000466680	ENST00000261647		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-3UTR	ENST00000466680	ENST00000486880		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000466680	ENST00000497842		ChiTaRS3.1			AA481472	FLOT1	chr6	2027969	+	TTC19	chr17	15932006	+
intron-intron	ENST00000453258	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000453258	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000543964	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371207	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371203	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000539125	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000371205	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000453258		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000543964		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000371207		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000371203		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000539125		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000371205		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-intron	ENST00000490659	ENST00000490659		ChiTaRS3.1			AV721912	ENTPD1	chr10	97593265	-	ENTPD1	chr10	97594478	-
intron-5UTR	ENST00000206423	ENST00000206423		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-intron	ENST00000206423	ENST00000439685		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-5UTR	ENST00000206423	ENST00000475181		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-5UTR	ENST00000439685	ENST00000206423		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-intron	ENST00000439685	ENST00000439685		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-5UTR	ENST00000439685	ENST00000475181		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-5UTR	ENST00000475181	ENST00000206423		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-intron	ENST00000475181	ENST00000439685		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-5UTR	ENST00000475181	ENST00000475181		ChiTaRS3.1			DA020732	CCDC80	chr3	112324505	-	CCDC80	chr3	112359736	-
intron-3UTR	ENST00000308302	ENST00000290200		ChiTaRS3.1			AI983092	GOLT1A	chr1	204174936	+	IL10RB	chr21	34668965	-
intron-3UTR	ENST00000475517	ENST00000290200		ChiTaRS3.1			AI983092	GOLT1A	chr1	204174936	+	IL10RB	chr21	34668965	-
intron-intron	ENST00000508803	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000508803	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382892	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382891	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382895	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000482415	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000382888	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000514045	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000436793	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000420906	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000503128	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000318789		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000475937		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000493089		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000484350		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000318779		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000491238		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000498215		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000468577		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
intron-intron	ENST00000398261	ENST00000472382		ChiTaRS3.1			U73662	WHSC1	chr4	1904709	-	FOXP1	chr3	71227176	+
5CDS-intron	ENST00000590898	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000590898	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000590898	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000590898	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000590898	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000399022	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000399022	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000399022	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000399022	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
5CDS-intron	ENST00000399022	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000337059	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000337059	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000337059	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000337059	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000337059	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000357384	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000357384	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000357384	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000357384	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000357384	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588737	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588737	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588737	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588737	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588737	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000319040	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000319040	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000319040	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000319040	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000319040	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588459	ENST00000471714		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588459	ENST00000284322		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588459	ENST00000495063		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588459	ENST00000383691		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
intron-intron	ENST00000588459	ENST00000532144		ChiTaRS3.1			AL118752	RPRD1A	chr18	33569788	-	ABI3BP	chr3	100636267	+
3UTR-3CDS	ENST00000381125	ENST00000538352		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381125	ENST00000025399		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381125	ENST00000419869		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381075	ENST00000538352		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381075	ENST00000025399		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381075	ENST00000419869		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
intron-3CDS	ENST00000421751	ENST00000538352		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
intron-3CDS	ENST00000421751	ENST00000025399		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
intron-3CDS	ENST00000421751	ENST00000419869		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381072	ENST00000538352		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381072	ENST00000025399		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
3UTR-3CDS	ENST00000381072	ENST00000419869		ChiTaRS3.1			BP431482	PFKP	chr10	3178956	+	STRAP	chr12	16055870	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807842	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
3UTR-3CDS	ENST00000492220	ENST00000396324		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
3UTR-3CDS	ENST00000492220	ENST00000452625		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
3UTR-3CDS	ENST00000492220	ENST00000576790		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
3UTR-3CDS	ENST00000492220	ENST00000300036		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
3UTR-intron	ENST00000492220	ENST00000573908		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000401000	ENST00000396324		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000401000	ENST00000452625		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000401000	ENST00000576790		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000401000	ENST00000300036		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
5CDS-intron	ENST00000401000	ENST00000573908		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000539519	ENST00000396324		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000539519	ENST00000452625		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000539519	ENST00000576790		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000539519	ENST00000300036		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
5CDS-intron	ENST00000539519	ENST00000573908		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-3CDS	ENST00000369067	ENST00000396324		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-3CDS	ENST00000369067	ENST00000452625		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-3CDS	ENST00000369067	ENST00000576790		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-3CDS	ENST00000369067	ENST00000300036		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-intron	ENST00000369067	ENST00000573908		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000369068	ENST00000396324		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000369068	ENST00000452625		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000369068	ENST00000576790		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
Frame-shit	ENST00000369068	ENST00000300036		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
5CDS-intron	ENST00000369068	ENST00000573908		ChiTaRS3.1			BE827752	RPRD2	chr1	150437089	-	MYH11	chr16	15876254	+
intron-3UTR	ENST00000431726	ENST00000261937		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000431726	ENST00000393347		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000431726	ENST00000502649		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000431726	ENST00000424276		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-3UTR	ENST00000265562	ENST00000261937		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000265562	ENST00000393347		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000265562	ENST00000502649		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000265562	ENST00000424276		ChiTaRS3.1			AA367982	PTPN23	chr3	47433059	-	FLT4	chr5	180029947	+
intron-intron	ENST00000335953	ENST00000335953		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000335953	ENST00000392996		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000335953	ENST00000535379		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000392996	ENST00000335953		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000392996	ENST00000392996		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000392996	ENST00000535379		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000535379	ENST00000335953		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000535379	ENST00000392996		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-intron	ENST00000535379	ENST00000535379		ChiTaRS3.1			BF510182	ZBTB16	chr11	113943954	-	ZBTB16	chr11	113945277	-
intron-3CDS	ENST00000398571	ENST00000398571		ChiTaRS3.1			BF885872	USP34	chr2	61417674	-	USP34	chr2	61417753	+
intron-intron	ENST00000398571	ENST00000472689		ChiTaRS3.1			BF885872	USP34	chr2	61417674	-	USP34	chr2	61417753	+
intron-3CDS	ENST00000472689	ENST00000398571		ChiTaRS3.1			BF885872	USP34	chr2	61417674	-	USP34	chr2	61417753	+
intron-intron	ENST00000472689	ENST00000472689		ChiTaRS3.1			BF885872	USP34	chr2	61417674	-	USP34	chr2	61417753	+
intron-3UTR	ENST00000344721	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000344721	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000344721	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000344721	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000344721	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000344721	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000355292	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000355292	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000355292	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000355292	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000355292	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000355292	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000358102	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000358102	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000358102	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000358102	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000358102	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000358102	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000512865	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000512865	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000512865	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000512865	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000512865	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000512865	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000511528	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000511528	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000511528	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000511528	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000511528	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000511528	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000503313	ENST00000344721		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000503313	ENST00000355292		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-3UTR	ENST00000503313	ENST00000358102		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000503313	ENST00000512865		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000503313	ENST00000511528		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000503313	ENST00000503313		ChiTaRS3.1			CA449982	NR3C2	chr4	149000023	+	NR3C2	chr4	149000477	-
intron-intron	ENST00000377869	ENST00000446176		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000377869	ENST00000420781		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000377869	ENST00000355681		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000377869	ENST00000443566		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000377869	ENST00000478129		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000220616	ENST00000446176		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000220616	ENST00000420781		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000220616	ENST00000355681		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000220616	ENST00000443566		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000220616	ENST00000478129		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000542445	ENST00000446176		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000542445	ENST00000420781		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000542445	ENST00000355681		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000542445	ENST00000443566		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000542445	ENST00000478129		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000519543	ENST00000446176		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000519543	ENST00000420781		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000519543	ENST00000355681		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000519543	ENST00000443566		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000519543	ENST00000478129		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000522523	ENST00000446176		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000522523	ENST00000420781		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000522523	ENST00000355681		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000522523	ENST00000443566		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-intron	ENST00000522523	ENST00000478129		ChiTaRS3.1			BG999952	TG	chr8	133918253	-	FNBP1	chr9	132803774	-
intron-3CDS	ENST00000462832	ENST00000413040		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000462832	ENST00000568733		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000462832	ENST00000566856		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000462832	ENST00000355851		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3UTR	ENST00000462832	ENST00000477666		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000379579	ENST00000413040		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000379579	ENST00000568733		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000379579	ENST00000566856		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000379579	ENST00000355851		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3UTR	ENST00000379579	ENST00000477666		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000334056	ENST00000413040		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000334056	ENST00000568733		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000334056	ENST00000566856		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3CDS	ENST00000334056	ENST00000355851		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
intron-3UTR	ENST00000334056	ENST00000477666		ChiTaRS3.1			AA412102	SPDYA	chr2	29066604	-	NUB1	chr7	151053000	-
Frame-shit	ENST00000262238	ENST00000333628		ChiTaRS3.1			BQ277692	YY1	chr14	100728650	-	TUBB2A	chr6	3157761	-
Frame-shit	ENST00000262238	ENST00000489942		ChiTaRS3.1			BQ277692	YY1	chr14	100728650	-	TUBB2A	chr6	3157761	-
intron-3CDS	ENST00000360631	ENST00000395309		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000413890		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000438792		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000395314		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000395308		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000395311		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000360631	ENST00000416613		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000360631	ENST00000554507		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000360631	ENST00000555573		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000395309		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000413890		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000438792		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000395314		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000395308		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000395311		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000255448	ENST00000416613		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000255448	ENST00000554507		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000255448	ENST00000555573		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000395309		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000413890		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000438792		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000395314		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000395308		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000395311		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379892	ENST00000416613		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000379892	ENST00000554507		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000379892	ENST00000555573		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000395309		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000413890		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000438792		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000395314		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000395308		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000395311		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000379893	ENST00000416613		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000379893	ENST00000554507		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000379893	ENST00000555573		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000395309		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000413890		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000438792		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000395314		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000395308		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000395311		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000460982	ENST00000416613		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000460982	ENST00000554507		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-intron	ENST00000460982	ENST00000555573		ChiTaRS3.1			BE836712	DCLK1	chr13	36659889	-	KTN1	chr14	56104518	-
intron-3CDS	ENST00000369981	ENST00000379802		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369981	ENST00000418664		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369985	ENST00000379802		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369985	ENST00000418664		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369977	ENST00000379802		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369977	ENST00000418664		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369975	ENST00000379802		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000369975	ENST00000418664		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000462633	ENST00000379802		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
intron-3CDS	ENST00000462633	ENST00000418664		ChiTaRS3.1			AW993512	MYO6	chr6	76483801	-	DSP	chr6	7574460	+
5CDS-intron	ENST00000355458	ENST00000342704		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000355458	ENST00000375279		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000355458	ENST00000344201		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000355458	ENST00000397798		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000355458	ENST00000346541		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000355458	ENST00000397800		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000355458	ENST00000492345		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000355458	ENST00000359606		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000355458	ENST00000491618		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000355458	ENST00000543126		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000264990	ENST00000342704		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000264990	ENST00000375279		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000264990	ENST00000344201		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000264990	ENST00000397798		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000264990	ENST00000346541		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000264990	ENST00000397800		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000264990	ENST00000492345		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000264990	ENST00000359606		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000264990	ENST00000491618		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000264990	ENST00000543126		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000545291	ENST00000342704		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000545291	ENST00000375279		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000545291	ENST00000344201		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000545291	ENST00000397798		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000545291	ENST00000346541		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000545291	ENST00000397800		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000545291	ENST00000492345		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000545291	ENST00000359606		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000545291	ENST00000491618		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000545291	ENST00000543126		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000481970	ENST00000342704		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000481970	ENST00000375279		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000481970	ENST00000344201		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000481970	ENST00000397798		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000481970	ENST00000346541		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000481970	ENST00000397800		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000481970	ENST00000492345		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-3UTR	ENST00000481970	ENST00000359606		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000481970	ENST00000491618		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5CDS-intron	ENST00000481970	ENST00000543126		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000489991	ENST00000342704		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000489991	ENST00000375279		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000489991	ENST00000344201		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000489991	ENST00000397798		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000489991	ENST00000346541		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000489991	ENST00000397800		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000489991	ENST00000492345		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-3UTR	ENST00000489991	ENST00000359606		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000489991	ENST00000491618		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
5UTR-intron	ENST00000489991	ENST00000543126		ChiTaRS3.1			DA326652	ACAD11	chr3	132378441	+	CBFA2T2	chr20	32237117	-
intron-intron	ENST00000283882	ENST00000283882		ChiTaRS3.1			AW936522	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000283882	ENST00000564286		ChiTaRS3.1			AW936522	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000564286	ENST00000283882		ChiTaRS3.1			AW936522	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
intron-intron	ENST00000564286	ENST00000564286		ChiTaRS3.1			AW936522	CFDP1	chr16	75343880	-	CFDP1	chr16	75348693	-
3UTR-3UTR	ENST00000373566	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373566	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373566	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373566	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373566	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373566	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000373566	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000373566	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000373563	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000373563	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000373563	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409480	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409480	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409480	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409547	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409547	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409547	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409196	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409196	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409196	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-3UTR	ENST00000409451	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409451	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
3UTR-intron	ENST00000409451	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000482666	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-intron	ENST00000482666	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-intron	ENST00000482666	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000373566		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000373563		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000409480		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000409547		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000409196		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-3UTR	ENST00000452341	ENST00000409451		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-intron	ENST00000452341	ENST00000482666		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-intron	ENST00000452341	ENST00000452341		ChiTaRS3.1			BI818732	GIGYF2	chr2	233723046	-	GIGYF2	chr2	233723125	+
intron-intron	ENST00000532984	ENST00000532984		ChiTaRS3.1			BQ346112	FXYD6-FXYD2	chr11	117707688	+	FXYD6-FXYD2	chr11	117708603	-
intron-intron	ENST00000370873	ENST00000596304		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370873	ENST00000430157		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370873	ENST00000596273		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370873	ENST00000442744		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000595683		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000595158		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000598780		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000599551		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000597451		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370873	ENST00000599595		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000596304		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000484488	ENST00000430157		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000484488	ENST00000596273		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000484488	ENST00000442744		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000595683		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000595158		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000598780		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000599551		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000597451		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000484488	ENST00000599595		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000596304		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370861	ENST00000430157		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370861	ENST00000596273		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370861	ENST00000442744		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000595683		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000595158		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000598780		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000599551		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000597451		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370861	ENST00000599595		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000596304		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370858	ENST00000430157		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370858	ENST00000596273		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-5UTR	ENST00000370858	ENST00000442744		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000595683		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000595158		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000598780		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000599551		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000597451		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-intron	ENST00000370858	ENST00000599595		ChiTaRS3.1			AA581992	PSMA7	chr20	60711972	+	UBA52	chr19	18682669	+
intron-3UTR	ENST00000261168	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3UTR	ENST00000543189	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3UTR	ENST00000536444	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3UTR	ENST00000544627	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3UTR	ENST00000541654	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3UTR	ENST00000540793	ENST00000534336		ChiTaRS3.1			AW866982	ATF7IP	chr12	14527806	+	MALAT1	chr11	65268242	-
intron-3CDS	ENST00000357308	ENST00000253039		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
intron-intron	ENST00000357308	ENST00000460032		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
intron-3CDS	ENST00000361060	ENST00000253039		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
intron-intron	ENST00000361060	ENST00000460032		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
intron-3CDS	ENST00000494201	ENST00000253039		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
intron-intron	ENST00000494201	ENST00000460032		ChiTaRS3.1			AW580222	GFPT1	chr2	69560231	+	EIF2S3	chrX	24080683	-
5CDS-intron	ENST00000359428	ENST00000378004		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000359428	ENST00000274498		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000359428	ENST00000486650		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000411637	ENST00000378004		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000411637	ENST00000274498		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000411637	ENST00000486650		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000451030	ENST00000378004		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000451030	ENST00000274498		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000451030	ENST00000486650		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000483497	ENST00000378004		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000483497	ENST00000274498		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
5CDS-intron	ENST00000483497	ENST00000486650		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
3UTR-intron	ENST00000465486	ENST00000378004		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
3UTR-intron	ENST00000465486	ENST00000274498		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
3UTR-intron	ENST00000465486	ENST00000486650		ChiTaRS3.1			BE837492	NUP214	chr9	134073222	+	ARHGAP26	chr5	142339538	-
intron-3UTR	ENST00000376062	ENST00000256637		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000376062	ENST00000538502		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000376062	ENST00000482236		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-3UTR	ENST00000376055	ENST00000256637		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000376055	ENST00000538502		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000376055	ENST00000482236		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-3UTR	ENST00000307677	ENST00000256637		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000307677	ENST00000538502		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000307677	ENST00000482236		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-3UTR	ENST00000420653	ENST00000256637		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000420653	ENST00000538502		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
intron-intron	ENST00000420653	ENST00000482236		ChiTaRS3.1			AI128252	BCL2L1	chr20	30252359	+	SORT1	chr1	109852288	+
5UTR-intron	ENST00000355857	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000355857	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000355857	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-3UTR	ENST00000355857	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000355857	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535617	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535617	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535617	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-3UTR	ENST00000535617	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535617	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535757	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535757	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535757	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-3UTR	ENST00000535757	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000535757	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000409094	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000409094	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000409094	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-3UTR	ENST00000409094	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
5UTR-intron	ENST00000409094	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000311521	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000311521	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000311521	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-3UTR	ENST00000311521	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000311521	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000460901	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000460901	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000460901	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-3UTR	ENST00000460901	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000460901	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000542275	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000542275	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000542275	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-3UTR	ENST00000542275	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000542275	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000393103	ENST00000369760		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000393103	ENST00000356489		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000393103	ENST00000320393		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-3UTR	ENST00000393103	ENST00000545529		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-intron	ENST00000393103	ENST00000486968		ChiTaRS3.1			BP391782	DBI	chr2	120124584	-	BCKDHB	chr6	81053432	+
intron-3CDS	ENST00000263202	ENST00000309042		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-intron	ENST00000263202	ENST00000514063		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-3CDS	ENST00000360834	ENST00000309042		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-intron	ENST00000360834	ENST00000514063		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-3CDS	ENST00000399523	ENST00000309042		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-intron	ENST00000399523	ENST00000514063		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-3CDS	ENST00000484101	ENST00000309042		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-intron	ENST00000484101	ENST00000514063		ChiTaRS3.1			BE813472	UFD1L	chr22	19450787	+	REST	chr4	57796393	-
intron-intron	ENST00000375643	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000375643	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375643	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375643	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375629	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000375629	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375629	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375629	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000443024	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000443024	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000443024	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000443024	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000447699	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000447699	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000447699	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000447699	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375627	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000375627	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375627	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000375627	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000474340	ENST00000506198		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-3UTR	ENST00000474340	ENST00000381334		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000474340	ENST00000542052		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000474340	ENST00000514904		ChiTaRS3.1			AJ711962	IARS	chr9	94972953	-	TMEM165	chr4	56292318	-
intron-intron	ENST00000454407	ENST00000377636		ChiTaRS3.1			CB218472	ZNF761	chr19	53948691	+	TBC1D4	chr13	75866240	-
intron-intron	ENST00000454407	ENST00000431480		ChiTaRS3.1			CB218472	ZNF761	chr19	53948691	+	TBC1D4	chr13	75866240	-
intron-intron	ENST00000454407	ENST00000425511		ChiTaRS3.1			CB218472	ZNF761	chr19	53948691	+	TBC1D4	chr13	75866240	-
intron-intron	ENST00000454407	ENST00000377625		ChiTaRS3.1			CB218472	ZNF761	chr19	53948691	+	TBC1D4	chr13	75866240	-
intron-intron	ENST00000454407	ENST00000478591		ChiTaRS3.1			CB218472	ZNF761	chr19	53948691	+	TBC1D4	chr13	75866240	-
5CDS-3UTR	ENST00000391857	ENST00000273258		ChiTaRS3.1			BM723492	RPL13A	chr19	49993526	+	ARL6IP5	chr3	69153989	+
5CDS-3UTR	ENST00000391857	ENST00000478935		ChiTaRS3.1			BM723492	RPL13A	chr19	49993526	+	ARL6IP5	chr3	69153989	+
3UTR-3UTR	ENST00000477613	ENST00000273258		ChiTaRS3.1			BM723492	RPL13A	chr19	49993526	+	ARL6IP5	chr3	69153989	+
3UTR-3UTR	ENST00000477613	ENST00000478935		ChiTaRS3.1			BM723492	RPL13A	chr19	49993526	+	ARL6IP5	chr3	69153989	+
intron-3CDS	ENST00000400546	ENST00000361891		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000400546	ENST00000480213		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000400546	ENST00000368681		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000284894	ENST00000361891		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000284894	ENST00000480213		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000284894	ENST00000368681		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000535285	ENST00000361891		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000535285	ENST00000480213		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000535285	ENST00000368681		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000486367	ENST00000361891		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000486367	ENST00000480213		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000486367	ENST00000368681		ChiTaRS3.1			AF113702	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000250559	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000250559	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000250559	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000250559	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000393436	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000393436	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000393436	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000393436	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000341355	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000341355	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000341355	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000341355	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000537460	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000537460	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000537460	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000537460	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000463493	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000463493	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000463493	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000463493	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000450214	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000450214	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000450214	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000450214	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000543393	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000543393	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000543393	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000543393	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000378985	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000378985	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000378985	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000378985	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000540209	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000540209	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000540209	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000540209	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000539091	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000539091	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000539091	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000539091	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000542145	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000542145	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000542145	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000542145	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000543697	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000543697	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000543697	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000543697	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000541216	ENST00000342160		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000541216	ENST00000262854		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000541216	ENST00000474288		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-intron	ENST00000541216	ENST00000218328		ChiTaRS3.1			CA428502	RAP1B	chr12	69020632	+	HUWE1	chrX	53565825	+
intron-3CDS	ENST00000535206	ENST00000301490		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-3CDS	ENST00000535206	ENST00000376693		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-3CDS	ENST00000379731	ENST00000301490		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-3CDS	ENST00000379731	ENST00000376693		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-3CDS	ENST00000541851	ENST00000301490		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-3CDS	ENST00000541851	ENST00000376693		ChiTaRS3.1			AI955342	B4GALT1	chr9	33110817	+	NUDT8	chr11	67397377	-
intron-intron	ENST00000380648	ENST00000380648		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
intron-intron	ENST00000380648	ENST00000609451		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
intron-3UTR	ENST00000380648	ENST00000477287		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
intron-intron	ENST00000609451	ENST00000380648		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
intron-intron	ENST00000609451	ENST00000609451		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
intron-3UTR	ENST00000609451	ENST00000477287		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
3UTR-intron	ENST00000477287	ENST00000380648		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
3UTR-intron	ENST00000477287	ENST00000609451		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
3UTR-3UTR	ENST00000477287	ENST00000477287		ChiTaRS3.1			BF762042	EBF4	chr20	2735838	-	EBF4	chr20	2735958	+
3UTR-intron	ENST00000393784	ENST00000530927		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
3UTR-intron	ENST00000393784	ENST00000380815		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
3UTR-intron	ENST00000393784	ENST00000467288		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000519860	ENST00000530927		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000519860	ENST00000380815		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000519860	ENST00000467288		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000523291	ENST00000530927		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000523291	ENST00000380815		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000523291	ENST00000467288		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000326654	ENST00000530927		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000326654	ENST00000380815		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000326654	ENST00000467288		ChiTaRS3.1			BG954532	ERGIC1	chr5	172379197	-	GMDS	chr6	2142163	+
intron-intron	ENST00000421515	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000421515	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000388759	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000443659	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000425478	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000437230	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000412028	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000415901	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000421515		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000388759		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000443659		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000425478		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000437230		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000412028		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000415901		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000416026	ENST00000416026		ChiTaRS3.1			AW150992	NKIRAS1	chr3	23962033	-	NKIRAS1	chr3	23961791	+
intron-intron	ENST00000389327	ENST00000389327		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389327	ENST00000389328		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389327	ENST00000438773		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389327	ENST00000522504		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389328	ENST00000389327		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389328	ENST00000389328		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389328	ENST00000438773		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000389328	ENST00000522504		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000438773	ENST00000389327		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000438773	ENST00000389328		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000438773	ENST00000438773		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000438773	ENST00000522504		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000522504	ENST00000389327		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000522504	ENST00000389328		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000522504	ENST00000438773		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000522504	ENST00000522504		ChiTaRS3.1			CV376062	TRAPPC9	chr8	141137208	+	TRAPPC9	chr8	141136032	+
intron-intron	ENST00000398571	ENST00000398571		ChiTaRS3.1			AW296692	USP34	chr2	61417775	-	USP34	chr2	61417838	+
intron-intron	ENST00000398571	ENST00000472689		ChiTaRS3.1			AW296692	USP34	chr2	61417775	-	USP34	chr2	61417838	+
intron-intron	ENST00000472689	ENST00000398571		ChiTaRS3.1			AW296692	USP34	chr2	61417775	-	USP34	chr2	61417838	+
intron-intron	ENST00000472689	ENST00000472689		ChiTaRS3.1			AW296692	USP34	chr2	61417775	-	USP34	chr2	61417838	+
intron-intron	ENST00000362003	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000400151	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000482726	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000470161	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000521023	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000505655	ENST00000384994		ChiTaRS3.1			BE929022	PCGF3	chr4	726354	+	NEAT1	chr11	65191343	+
intron-intron	ENST00000254108	ENST00000398907		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000398905		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000288319		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000398897		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000398911		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000398910		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000417133		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000442448		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000453032		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000398919		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000429727		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000254108	ENST00000485493		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398907		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398905		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000288319		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398897		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398911		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398910		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000417133		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000442448		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000453032		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000398919		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000429727		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000380244	ENST00000485493		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398907		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398905		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000288319		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398897		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398911		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398910		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000417133		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000442448		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000453032		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000398919		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000429727		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000568685	ENST00000485493		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398907		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398905		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000288319		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398897		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398911		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398910		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000417133		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000442448		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000453032		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000398919		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000429727		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-intron	ENST00000474990	ENST00000485493		ChiTaRS3.1			Y10001	FUS	chr16	31198569	+	ERG	chr21	39758163	-
intron-3CDS	ENST00000397910	ENST00000397910		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-3CDS	ENST00000397910	ENST00000380951		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-intron	ENST00000397910	ENST00000596956		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-3CDS	ENST00000380951	ENST00000397910		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-3CDS	ENST00000380951	ENST00000380951		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-intron	ENST00000380951	ENST00000596956		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-3CDS	ENST00000596956	ENST00000397910		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-3CDS	ENST00000596956	ENST00000380951		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
intron-intron	ENST00000596956	ENST00000596956		ChiTaRS3.1			AA640762	MUC16	chr19	9000482	-	MUC16	chr19	8999456	+
3UTR-3UTR	ENST00000561463	ENST00000534336		ChiTaRS3.1			BF933392	DNM1P47	chr15	102298996	-	MALAT1	chr11	65267953	+
intron-intron	ENST00000370081	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000230459	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000370089	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000509698	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000460985	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000472311	ENST00000390394		ChiTaRS3.1			BU594642	COX7A2	chr6	75953447	-	TRBV20-1	chr16	2012274	-
intron-intron	ENST00000379933	ENST00000298139		ChiTaRS3.1			BU607882	RREB1	chr6	7252213	+	WRN	chr8	30989496	-
5CDS-intron	ENST00000379938	ENST00000298139		ChiTaRS3.1			BU607882	RREB1	chr6	7252213	+	WRN	chr8	30989496	-
intron-intron	ENST00000334984	ENST00000298139		ChiTaRS3.1			BU607882	RREB1	chr6	7252213	+	WRN	chr8	30989496	-
intron-intron	ENST00000349384	ENST00000298139		ChiTaRS3.1			BU607882	RREB1	chr6	7252213	+	WRN	chr8	30989496	-
intron-intron	ENST00000377694	ENST00000254108		ChiTaRS3.1			BF946322	IGFBPL1	chr9	38407089	+	FUS	chr16	31200632	-
intron-intron	ENST00000377694	ENST00000380244		ChiTaRS3.1			BF946322	IGFBPL1	chr9	38407089	+	FUS	chr16	31200632	-
intron-intron	ENST00000377694	ENST00000568685		ChiTaRS3.1			BF946322	IGFBPL1	chr9	38407089	+	FUS	chr16	31200632	-
intron-intron	ENST00000377694	ENST00000474990		ChiTaRS3.1			BF946322	IGFBPL1	chr9	38407089	+	FUS	chr16	31200632	-
intron-intron	ENST00000466084	ENST00000313735		ChiTaRS3.1			BF844302	ZDHHC3	chr3	44969038	+	NOS2	chr17	26218204	-
intron-intron	ENST00000296127	ENST00000313735		ChiTaRS3.1			BF844302	ZDHHC3	chr3	44969038	+	NOS2	chr17	26218204	-
intron-intron	ENST00000424952	ENST00000313735		ChiTaRS3.1			BF844302	ZDHHC3	chr3	44969038	+	NOS2	chr17	26218204	-
intron-intron	ENST00000342790	ENST00000313735		ChiTaRS3.1			BF844302	ZDHHC3	chr3	44969038	+	NOS2	chr17	26218204	-
intron-3UTR	ENST00000371657	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000371657	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000396059	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000396059	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000371674	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000371674	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000371677	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000371677	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000340309	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000340309	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000420027	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000420027	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-3UTR	ENST00000415862	ENST00000263035		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000415862	ENST00000465617		ChiTaRS3.1			CB134342	UBE2V1	chr20	48698608	+	DHTKD1	chr10	12164419	+
intron-intron	ENST00000369940	ENST00000369940		ChiTaRS3.1			BG574592	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000369940	ENST00000607739		ChiTaRS3.1			BG574592	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000607739	ENST00000369940		ChiTaRS3.1			BG574592	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-intron	ENST00000607739	ENST00000607739		ChiTaRS3.1			BG574592	IRAK1BP1	chr6	79649635	-	IRAK1BP1	chr6	79650992	-
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006742	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-5UTR	ENST00000253083	ENST00000253083		ChiTaRS3.1			AK130532	HIP1R	chr12	123338467	+	HIP1R	chr12	123320019	+
intron-intron	ENST00000253083	ENST00000537322		ChiTaRS3.1			AK130532	HIP1R	chr12	123338467	+	HIP1R	chr12	123320019	+
intron-5UTR	ENST00000537322	ENST00000253083		ChiTaRS3.1			AK130532	HIP1R	chr12	123338467	+	HIP1R	chr12	123320019	+
intron-intron	ENST00000537322	ENST00000537322		ChiTaRS3.1			AK130532	HIP1R	chr12	123338467	+	HIP1R	chr12	123320019	+
3UTR-intron	ENST00000520358	ENST00000520358		ChiTaRS3.1			BF813122	TSPAN18	chr11	44952288	-	TSPAN18	chr11	44953664	-
3UTR-3UTR	ENST00000520358	ENST00000340160		ChiTaRS3.1			BF813122	TSPAN18	chr11	44952288	-	TSPAN18	chr11	44953664	-
3UTR-intron	ENST00000340160	ENST00000520358		ChiTaRS3.1			BF813122	TSPAN18	chr11	44952288	-	TSPAN18	chr11	44953664	-
3UTR-3UTR	ENST00000340160	ENST00000340160		ChiTaRS3.1			BF813122	TSPAN18	chr11	44952288	-	TSPAN18	chr11	44953664	-
intron-intron	ENST00000406337	ENST00000262367		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000406337	ENST00000382070		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000265713	ENST00000262367		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000265713	ENST00000382070		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000396930	ENST00000262367		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000396930	ENST00000382070		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000485568	ENST00000262367		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
intron-intron	ENST00000485568	ENST00000382070		ChiTaRS3.1			AJ315152	KAT6A	chr8	41793259	-	CREBBP	chr16	3927186	-
Frame-shit	ENST00000366639	ENST00000401722		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
In-frame	ENST00000366639	ENST00000228318		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
In-frame	ENST00000366639	ENST00000188376		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
Frame-shit	ENST00000366639	ENST00000551917		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
Frame-shit	ENST00000366639	ENST00000552981		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
5CDS-intron	ENST00000366639	ENST00000551265		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
5CDS-intron	ENST00000366639	ENST00000547534		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
5CDS-intron	ENST00000366639	ENST00000549338		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
5CDS-intron	ENST00000366639	ENST00000548847		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-3CDS	ENST00000602825	ENST00000401722		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-3CDS	ENST00000602825	ENST00000228318		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-3CDS	ENST00000602825	ENST00000188376		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-3CDS	ENST00000602825	ENST00000551917		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-3CDS	ENST00000602825	ENST00000552981		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-intron	ENST00000602825	ENST00000551265		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-intron	ENST00000602825	ENST00000547534		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-intron	ENST00000602825	ENST00000549338		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-intron	ENST00000602825	ENST00000548847		ChiTaRS3.1			BE738912	TSNAX	chr1	231700307	+	SLC25A3	chr12	98995210	+
intron-intron	ENST00000359470	ENST00000226951		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000359470	ENST00000442825		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000359470	ENST00000507719		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000359470	ENST00000515667		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000461135	ENST00000226951		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000461135	ENST00000442825		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000461135	ENST00000507719		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000461135	ENST00000515667		ChiTaRS3.1			AA225642	C1orf116	chr1	207195200	-	CLNK	chr4	10660242	-
intron-intron	ENST00000524189	ENST00000476233		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-3UTR	ENST00000524189	ENST00000354667		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000524189	ENST00000356674		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000521515	ENST00000476233		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-3UTR	ENST00000521515	ENST00000354667		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000521515	ENST00000356674		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000404075	ENST00000476233		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-3UTR	ENST00000404075	ENST00000354667		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000404075	ENST00000356674		ChiTaRS3.1			BQ370392	KIF13B	chr8	28977220	+	HNRNPA2B1	chr7	26231359	+
intron-intron	ENST00000404260	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000404260	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403625	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406374	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000406039	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000478569	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000490016	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000403666	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000405643	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000261569	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000302538		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000544583		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000572441		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000574437		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000291107		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000543210		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000536794		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-intron	ENST00000407621	ENST00000573895		ChiTaRS3.1			BI011012	MAST4	chr5	66339681	-	ABR	chr17	1074528	-
intron-3CDS	ENST00000355451	ENST00000331920		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000418258		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000421141		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000437951		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000430669		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000429896		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000355451	ENST00000375274		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-intron	ENST00000355451	ENST00000548379		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-intron	ENST00000355451	ENST00000468211		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000331920		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000418258		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000421141		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000437951		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000430669		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000429896		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3CDS	ENST00000460110	ENST00000375274		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-intron	ENST00000460110	ENST00000548379		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-intron	ENST00000460110	ENST00000468211		ChiTaRS3.1			BF091762	NUDCD3	chr7	44530238	+	PTCH1	chr9	98239953	+
intron-3UTR	ENST00000397239	ENST00000397239		ChiTaRS3.1			BQ214682	DEK	chr6	18224464	+	DEK	chr6	18225752	-
intron-3UTR	ENST00000397239	ENST00000244776		ChiTaRS3.1			BQ214682	DEK	chr6	18224464	+	DEK	chr6	18225752	-
intron-3UTR	ENST00000244776	ENST00000397239		ChiTaRS3.1			BQ214682	DEK	chr6	18224464	+	DEK	chr6	18225752	-
intron-3UTR	ENST00000244776	ENST00000244776		ChiTaRS3.1			BQ214682	DEK	chr6	18224464	+	DEK	chr6	18225752	-
intron-intron	ENST00000300896	ENST00000288561		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000300896	ENST00000473989		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000592339	ENST00000288561		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000592339	ENST00000473989		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000393003	ENST00000288561		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000393003	ENST00000473989		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000586881	ENST00000288561		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000586881	ENST00000473989		ChiTaRS3.1			AA011412	USP32	chr17	58319851	+	UBN2	chr7	138965450	-
intron-intron	ENST00000334512	ENST00000334512		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000334512	ENST00000478357		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000334512	ENST00000446377		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000478357	ENST00000334512		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000478357	ENST00000478357		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000478357	ENST00000446377		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000446377	ENST00000334512		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000446377	ENST00000478357		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
intron-intron	ENST00000446377	ENST00000446377		ChiTaRS3.1			AA864742	ZMIZ1	chr10	81043049	-	ZMIZ1	chr10	81047573	-
3UTR-intron	ENST00000361905	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361905	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361905	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361905	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527636	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527636	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527636	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527636	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527575	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527575	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527575	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000527575	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000334310	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000334310	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000334310	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
intron-intron	ENST00000334310	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361985	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361985	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361985	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000361985	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000526600	ENST00000512033		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000526600	ENST00000296679		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000526600	ENST00000414719		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
3UTR-intron	ENST00000526600	ENST00000507029		ChiTaRS3.1			BF753132	TEAD1	chr11	12960678	+	WDR41	chr5	76733290	+
5CDS-3UTR	ENST00000353383	ENST00000283928		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
5CDS-intron	ENST00000353383	ENST00000466516		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-3UTR	ENST00000489697	ENST00000283928		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000489697	ENST00000466516		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-3UTR	ENST00000261641	ENST00000283928		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000261641	ENST00000466516		ChiTaRS3.1			AI547182	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000474320	ENST00000341653		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-3UTR	ENST00000474320	ENST00000358402		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-3UTR	ENST00000474320	ENST00000555932		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-3UTR	ENST00000474320	ENST00000284165		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-3UTR	ENST00000474320	ENST00000358664		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000555419		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000557277		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000556979		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000555667		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000557746		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000556443		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-intron	ENST00000474320	ENST00000246163		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000341653		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-3UTR	ENST00000379221	ENST00000358402		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-3UTR	ENST00000379221	ENST00000555932		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-3UTR	ENST00000379221	ENST00000284165		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-3UTR	ENST00000379221	ENST00000358664		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000555419		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000557277		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000556979		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000555667		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000557746		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000556443		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
5CDS-intron	ENST00000379221	ENST00000246163		ChiTaRS3.1			BU674262	DNAJC15	chr13	43681328	-	MAX	chr14	65542365	-
intron-3UTR	ENST00000350997	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000350997	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000350997	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000350997	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000350997	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000350997	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-3UTR	ENST00000536991	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000536991	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000536991	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000536991	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000536991	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000536991	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-3UTR	ENST00000433932	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000433932	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000433932	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000433932	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000433932	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000433932	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-3UTR	ENST00000460649	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000460649	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000460649	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000460649	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000460649	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000460649	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-3UTR	ENST00000542506	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000542506	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000542506	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000542506	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000542506	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000542506	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-3UTR	ENST00000541683	ENST00000350997		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000541683	ENST00000536991		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000541683	ENST00000433932		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000541683	ENST00000460649		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000541683	ENST00000542506		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000541683	ENST00000541683		ChiTaRS3.1			BE789742	FADS1	chr11	61568505	+	FADS1	chr11	61568421	-
intron-intron	ENST00000367689	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367689	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000357444	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000251507	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000325589	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367686	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367687	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000347255	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000489615	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000478442	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000486220	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000392064	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000361654		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000545889		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000302528		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000358808		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000537178		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000540338		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000536634		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000367688	ENST00000540539		ChiTaRS3.1			AW836212	RABGAP1L	chr1	174784084	-	CLIP1	chr12	122830226	+
intron-intron	ENST00000337620	ENST00000560305		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000561011		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000559911		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558113		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000358005		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000416810		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558750		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000558871		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000337620	ENST00000560109		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560305		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000561011		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000559911		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558113		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000358005		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000416810		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558750		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000558871		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
5UTR-intron	ENST00000396386	ENST00000560109		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560305		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000561011		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000559911		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558113		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000358005		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000416810		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558750		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000558871		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000409747	ENST00000560109		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560305		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000561011		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000559911		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558113		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000358005		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000416810		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558750		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000558871		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000497498	ENST00000560109		ChiTaRS3.1			BF001702	CBX3	chr7	26241365	-	C15orf57	chr15	40854180	+
intron-intron	ENST00000375258	ENST00000297029		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000375258	ENST00000519209		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000375258	ENST00000445618		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000375258	ENST00000473722		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000463392	ENST00000297029		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000463392	ENST00000519209		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000463392	ENST00000445618		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000463392	ENST00000473722		ChiTaRS3.1			AA332802	METTL8	chr2	172248599	-	SCIN	chr7	12600781	-
intron-intron	ENST00000472193	ENST00000425013		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000472193	ENST00000389902		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000472193	ENST00000469375		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000428675	ENST00000425013		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000428675	ENST00000389902		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000428675	ENST00000469375		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000437704	ENST00000425013		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000437704	ENST00000389902		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
intron-intron	ENST00000437704	ENST00000469375		ChiTaRS3.1			BG010702	PLCL1	chr2	199008346	+	RNF216	chr7	5815036	-
3UTR-3UTR	ENST00000482108	ENST00000482108		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
3UTR-intron	ENST00000482108	ENST00000488574		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
3UTR-intron	ENST00000482108	ENST00000465184		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-3UTR	ENST00000488574	ENST00000482108		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-intron	ENST00000488574	ENST00000488574		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-intron	ENST00000488574	ENST00000465184		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-3UTR	ENST00000465184	ENST00000482108		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-intron	ENST00000465184	ENST00000488574		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-intron	ENST00000465184	ENST00000465184		ChiTaRS3.1			BF751302	PEG10	chr7	94298502	-	PEG10	chr7	94298905	+
intron-3CDS	ENST00000336868	ENST00000361937		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000336868	ENST00000401393		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-intron	ENST00000336868	ENST00000561244		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000577098	ENST00000361937		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000577098	ENST00000401393		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-intron	ENST00000577098	ENST00000561244		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000575801	ENST00000361937		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000575801	ENST00000401393		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-intron	ENST00000575801	ENST00000561244		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000538650	ENST00000361937		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000538650	ENST00000401393		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-intron	ENST00000538650	ENST00000561244		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000537628	ENST00000361937		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000537628	ENST00000401393		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-intron	ENST00000537628	ENST00000561244		ChiTaRS3.1			BE931342	NXN	chr17	837228	-	INO80	chr15	41347486	-
intron-3CDS	ENST00000398309	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000398309		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000376104		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000418306		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000280241		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000543673		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000376106		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000330014		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000537455		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000524982		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000532653		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000531015		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000398301		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000426717		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000404783		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000398304		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000530800		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000472545		ChiTaRS3.1			BF369902	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524381	ENST00000578844		ChiTaRS3.1			BF856072	OPCML	chr11	132542973	+	MIR5095	chr20	55948608	+
intron-intron	ENST00000529038	ENST00000578844		ChiTaRS3.1			BF856072	OPCML	chr11	132542973	+	MIR5095	chr20	55948608	+
intron-intron	ENST00000331898	ENST00000578844		ChiTaRS3.1			BF856072	OPCML	chr11	132542973	+	MIR5095	chr20	55948608	+
intron-intron	ENST00000374778	ENST00000578844		ChiTaRS3.1			BF856072	OPCML	chr11	132542973	+	MIR5095	chr20	55948608	+
intron-intron	ENST00000541867	ENST00000578844		ChiTaRS3.1			BF856072	OPCML	chr11	132542973	+	MIR5095	chr20	55948608	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331272	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000292599	ENST00000352456		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000595018		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000392006		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000378215		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000602130		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000593587		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000263367		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000292599	ENST00000594207		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000352456		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000595018		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000392006		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000378215		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000602130		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000593587		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000263367		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-intron	ENST00000503050	ENST00000594207		ChiTaRS3.1			AW833292	MAML1	chr5	179164091	-	HNRNPUL1	chr19	41772701	-
intron-3UTR	ENST00000592273	ENST00000348624		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-intron	ENST00000592273	ENST00000401897		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000592273	ENST00000490487		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000242784	ENST00000348624		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-intron	ENST00000242784	ENST00000401897		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000242784	ENST00000490487		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000588213	ENST00000348624		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-intron	ENST00000588213	ENST00000401897		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000588213	ENST00000490487		ChiTaRS3.1			BG925002	C19orf43	chr19	12841512	+	AP5Z1	chr7	4831298	+
intron-3UTR	ENST00000319622	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000319622	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000319622	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000319622	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565184	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565184	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565184	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000565184	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000389093	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000389093	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000389093	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000389093	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000335181	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000335181	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000335181	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000335181	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568883	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568883	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568883	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000568883	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000449901	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000449901	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000449901	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000449901	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565154	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565154	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000565154	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000565154	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568459	ENST00000295598		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568459	ENST00000537345		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-3UTR	ENST00000568459	ENST00000369496		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000568459	ENST00000491156		ChiTaRS3.1			BF806062	PKM	chr15	72491791	+	ATP1A1	chr1	116947069	-
intron-intron	ENST00000361654	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000545889	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000302528	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000358808	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000537178	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000540338	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000536634	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
intron-intron	ENST00000540539	ENST00000374919		ChiTaRS3.1			AA324222	CLIP1	chr12	122836969	-	SPIN3	chrX	57007531	-
3UTR-intron	ENST00000263097	ENST00000269500		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000263097	ENST00000419743		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000263097	ENST00000580806		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000606983	ENST00000269500		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000606983	ENST00000419743		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000606983	ENST00000580806		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000348419	ENST00000269500		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000348419	ENST00000419743		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
3UTR-intron	ENST00000348419	ENST00000580806		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000565096	ENST00000269500		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000565096	ENST00000419743		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000565096	ENST00000580806		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000562958	ENST00000269500		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000562958	ENST00000419743		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-intron	ENST00000562958	ENST00000580806		ChiTaRS3.1			AA906172	CNN2	chr19	1038855	-	FBXO15	chr18	71813133	+
intron-3UTR	ENST00000518838	ENST00000217131		ChiTaRS3.1			AW839802	TMEM74	chr8	109709358	-	CTSZ	chr20	57570361	+
intron-3UTR	ENST00000297459	ENST00000217131		ChiTaRS3.1			AW839802	TMEM74	chr8	109709358	-	CTSZ	chr20	57570361	+
intron-3CDS	ENST00000439649	ENST00000400520		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000439649	ENST00000496748		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000439649	ENST00000375111		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-3CDS	ENST00000369236	ENST00000400520		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000369236	ENST00000496748		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000369236	ENST00000375111		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-3CDS	ENST00000355422	ENST00000400520		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000355422	ENST00000496748		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000355422	ENST00000375111		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-3CDS	ENST00000544592	ENST00000400520		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000544592	ENST00000496748		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000544592	ENST00000375111		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-3CDS	ENST00000490345	ENST00000400520		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000490345	ENST00000496748		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-5UTR	ENST00000490345	ENST00000375111		ChiTaRS3.1			BQ326672	GFRA1	chr10	117817887	+	PLA2G2A	chr1	20305012	-
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BF592632	KRT4	chr12	53200576	+	KRT4	chr12	53200681	-
intron-3CDS	ENST00000375789	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000375789	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000375789	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000480913	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000480913	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000480913	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000375787	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000375787	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000375787	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000375792	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000375792	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000375792	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000443533	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000443533	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000443533	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000493926	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000493926	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000493926	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000413532	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000413532	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000413532	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000411456	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000411456	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000411456	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000451411	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000451411	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000451411	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000488668	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000488668	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000488668	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000430482	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000430482	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000430482	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000437889	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000437889	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000437889	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000414455	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000414455	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000414455	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000490871	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000490871	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000490871	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000444699	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000444699	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000444699	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000454138	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000454138	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000454138	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000400062	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000400062	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000400062	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000466207	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000466207	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000466207	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000383409	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000383409	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000383409	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000400063	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000400063	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000400063	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000413655	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000413655	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000413655	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000494351	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000494351	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000494351	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000424790	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000424790	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000424790	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000447101	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000447101	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000447101	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000427126	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000427126	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000427126	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000473167	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000473167	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000473167	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000426149	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000426149	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000426149	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-3CDS	ENST00000434464	ENST00000472232		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000434464	ENST00000467389		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-5UTR	ENST00000434464	ENST00000379704		ChiTaRS3.1			AW393642	DDAH2	chr6	3026266	+	BAG1	chr9	33264389	-
intron-intron	ENST00000538442	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000538442	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000399150	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000252229	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000427115	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000442104	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451603	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000546706	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000438954	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000458032	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551950	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000437651	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000383514	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551608	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436531	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000436655	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000547574	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000400313	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428416	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000549014	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000428059	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000451789	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000443156	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000538442		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000399150		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000252229		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000427115		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000442104		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000451603		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000546706		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000438954		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000458032		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000551950		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000437651		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000383514		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000551608		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000436531		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000436655		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000547574		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000400313		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000428416		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000549014		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000428059		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000451789		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000443156		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000551960	ENST00000551960		ChiTaRS3.1			CA431962	MICB	chr6	2616442	+	MICB	chr6	2618042	-
intron-intron	ENST00000209873	ENST00000398645		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000209873	ENST00000529006		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000209873	ENST00000526258		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000209873	ENST00000308783		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000209873	ENST00000530342		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000394384	ENST00000398645		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000394384	ENST00000529006		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000394384	ENST00000526258		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000394384	ENST00000308783		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000394384	ENST00000530342		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000550286	ENST00000398645		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000550286	ENST00000529006		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000550286	ENST00000526258		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000550286	ENST00000308783		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000550286	ENST00000530342		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000549983	ENST00000398645		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000549983	ENST00000529006		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000549983	ENST00000526258		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000549983	ENST00000308783		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000549983	ENST00000530342		ChiTaRS3.1			BQ301032	AAAS	chr12	53715001	+	KDM2A	chr11	66901279	+
intron-intron	ENST00000260983	ENST00000256190		ChiTaRS3.1			CV416642	HECW2	chr2	197326739	-	SBF2	chr11	10133785	-
intron-intron	ENST00000260983	ENST00000527019		ChiTaRS3.1			CV416642	HECW2	chr2	197326739	-	SBF2	chr11	10133785	-
intron-intron	ENST00000409111	ENST00000256190		ChiTaRS3.1			CV416642	HECW2	chr2	197326739	-	SBF2	chr11	10133785	-
intron-intron	ENST00000409111	ENST00000527019		ChiTaRS3.1			CV416642	HECW2	chr2	197326739	-	SBF2	chr11	10133785	-
intron-3CDS	ENST00000292205	ENST00000355899		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000292205	ENST00000537301		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000292205	ENST00000289290		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000292205	ENST00000420625		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000292205	ENST00000539310		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-5UTR	ENST00000292205	ENST00000543070		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368474	ENST00000355899		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368474	ENST00000537301		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368474	ENST00000289290		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368474	ENST00000420625		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368474	ENST00000539310		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-5UTR	ENST00000368474	ENST00000543070		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368471	ENST00000355899		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368471	ENST00000537301		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368471	ENST00000289290		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368471	ENST00000420625		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000368471	ENST00000539310		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-5UTR	ENST00000368471	ENST00000543070		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000471068	ENST00000355899		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000471068	ENST00000537301		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000471068	ENST00000289290		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000471068	ENST00000420625		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3CDS	ENST00000471068	ENST00000539310		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-5UTR	ENST00000471068	ENST00000543070		ChiTaRS3.1			BE177612	ADAR	chr1	154555930	-	PLS3	chrX	114874787	-
intron-3UTR	ENST00000265044	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000265044	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000467789	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000467789	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000476217	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000476217	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000478842	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000478842	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000463503	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000463503	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000496050	ENST00000265044		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000467789		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000476217		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000478842		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000463503		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-intron	ENST00000496050	ENST00000496050		ChiTaRS3.1			AW838512	SSR3	chr3	156260977	+	SSR3	chr3	156259374	+
intron-3UTR	ENST00000404233	ENST00000373627		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000404233	ENST00000373616		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000404233	ENST00000471737		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000404233	ENST00000538808		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000529972	ENST00000373627		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000529972	ENST00000373616		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000529972	ENST00000471737		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000529972	ENST00000538808		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000525859	ENST00000373627		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000525859	ENST00000373616		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000525859	ENST00000471737		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000525859	ENST00000538808		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000543287	ENST00000373627		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-3UTR	ENST00000543287	ENST00000373616		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000543287	ENST00000471737		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000543287	ENST00000538808		ChiTaRS3.1			AI026692	HYOU1	chr11	118915041	+	MTCH1	chr6	36936033	+
intron-intron	ENST00000490882	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000490882	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000429972	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000295956	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000358537	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000357272	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000348383	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000493452	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000419752	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000490882		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000429972		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000295956		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000358537		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000357272		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000348383		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000493452		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000419752		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
intron-intron	ENST00000484981	ENST00000484981		ChiTaRS3.1			BG992732	FLNB	chr3	58113396	-	FLNB	chr3	58113162	+
3UTR-intron	ENST00000322428	ENST00000398519		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000322428	ENST00000314028		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000322428	ENST00000392334		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000322428	ENST00000578904		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000534585	ENST00000398519		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000534585	ENST00000314028		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000534585	ENST00000392334		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
3UTR-intron	ENST00000534585	ENST00000578904		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
intron-intron	ENST00000532522	ENST00000398519		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
intron-intron	ENST00000532522	ENST00000314028		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
intron-intron	ENST00000532522	ENST00000392334		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
intron-intron	ENST00000532522	ENST00000578904		ChiTaRS3.1			CA449192	MAF1	chr8	145162420	-	CSNK1D	chr17	80203774	-
intron-3CDS	ENST00000227524	ENST00000227524		ChiTaRS3.1			AW373052	PRPF19	chr11	60665654	+	PRPF19	chr11	60666670	-
intron-intron	ENST00000340170	ENST00000340170		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000340170	ENST00000263208		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000340170	ENST00000541063		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000340170	ENST00000546308		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000340170	ENST00000464189		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000263208	ENST00000340170		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000263208	ENST00000263208		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000263208	ENST00000541063		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000263208	ENST00000546308		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000263208	ENST00000464189		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000541063	ENST00000340170		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000541063	ENST00000263208		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000541063	ENST00000541063		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000541063	ENST00000546308		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000541063	ENST00000464189		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000546308	ENST00000340170		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000546308	ENST00000263208		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000546308	ENST00000541063		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000546308	ENST00000546308		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000546308	ENST00000464189		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000464189	ENST00000340170		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000464189	ENST00000263208		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000464189	ENST00000541063		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000464189	ENST00000546308		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000464189	ENST00000464189		ChiTaRS3.1			AW893202	HIRA	chr22	19332964	-	HIRA	chr22	19333785	-
intron-intron	ENST00000397338	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000397338	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000397338	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000397338	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000282512	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000282512	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000282512	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000282512	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000381937	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000381937	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000381937	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000381937	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000511613	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000511613	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000511613	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000511613	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000506945	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000506945	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000506945	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000506945	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000514504	ENST00000537098		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000514504	ENST00000539778		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000514504	ENST00000566513		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000514504	ENST00000398040		ChiTaRS3.1			AA581772	NADK2	chr5	36193313	+	CMIP	chr16	81523922	-
intron-intron	ENST00000337478	ENST00000304698		ChiTaRS3.1			BE812272	ITPRIP	chr10	106072123	+	FAM171B	chr2	187585476	-
intron-intron	ENST00000278071	ENST00000304698		ChiTaRS3.1			BE812272	ITPRIP	chr10	106072123	+	FAM171B	chr2	187585476	-
intron-intron	ENST00000358187	ENST00000304698		ChiTaRS3.1			BE812272	ITPRIP	chr10	106072123	+	FAM171B	chr2	187585476	-
intron-3UTR	ENST00000340482	ENST00000454703		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000515030		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000281455		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000507295		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000437665		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000504342		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-intron	ENST00000340482	ENST00000504900		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000340482	ENST00000513317		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000454703		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000515030		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000281455		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000507295		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000437665		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000504342		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-intron	ENST00000225275	ENST00000504900		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000225275	ENST00000513317		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000454703		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000515030		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000281455		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000507295		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000437665		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000504342		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-intron	ENST00000578493	ENST00000504900		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3UTR	ENST00000578493	ENST00000513317		ChiTaRS3.1			BI020982	MPO	chr17	56355832	+	ACSL1	chr4	185678233	-
intron-3CDS	ENST00000437232	ENST00000276204		ChiTaRS3.1			BQ365892	VIM-AS1	chr10	17268299	-	DOCK11	chrX	117752613	+
intron-3CDS	ENST00000437232	ENST00000276202		ChiTaRS3.1			BQ365892	VIM-AS1	chr10	17268299	-	DOCK11	chrX	117752613	+
intron-3CDS	ENST00000605833	ENST00000276204		ChiTaRS3.1			BQ365892	VIM-AS1	chr10	17268299	-	DOCK11	chrX	117752613	+
intron-3CDS	ENST00000605833	ENST00000276202		ChiTaRS3.1			BQ365892	VIM-AS1	chr10	17268299	-	DOCK11	chrX	117752613	+
intron-intron	ENST00000606738	ENST00000222214		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000606738	ENST00000591470		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000606738	ENST00000457854		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000606738	ENST00000422947		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000606738	ENST00000588242		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000435576	ENST00000222214		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000435576	ENST00000591470		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000435576	ENST00000457854		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000435576	ENST00000422947		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000435576	ENST00000588242		ChiTaRS3.1			BI007572	TRABD2B	chr1	48341268	+	GCDH	chr19	13009950	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF355862	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000335272	ENST00000319670		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-intron	ENST00000335272	ENST00000359920		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-intron	ENST00000320996	ENST00000319670		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-intron	ENST00000320996	ENST00000359920		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-intron	ENST00000455418	ENST00000319670		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-intron	ENST00000455418	ENST00000359920		ChiTaRS3.1			AI863682	PITPNB	chr22	28275273	+	ARHGEF18	chr19	7513088	-
intron-3CDS	ENST00000265909	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000265909	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000265909	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000265909	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000265909	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000265909	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000265909	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000534726	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000534726	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000534726	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000534726	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000534726	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000534726	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000534726	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000545537	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000545537	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000545537	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000545537	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000545537	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000545537	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000545537	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000426933	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000426933	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000426933	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000426933	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000426933	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000426933	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000426933	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533318	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533318	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533318	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533318	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533318	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000533318	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000533318	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000530356	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000530356	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000530356	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000530356	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000530356	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000530356	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000530356	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000539184	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000539184	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000539184	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000539184	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000539184	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000539184	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000539184	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000528555	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000528555	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000528555	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000528555	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000528555	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000528555	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000528555	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533214	ENST00000296674		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533214	ENST00000510210		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533214	ENST00000512493		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533214	ENST00000510019		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-3CDS	ENST00000533214	ENST00000507980		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000533214	ENST00000503605		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-5UTR	ENST00000533214	ENST00000511844		ChiTaRS3.1			BF154662	SNX19	chr11	130753340	+	RPS23	chr5	81573597	-
intron-intron	ENST00000265340	ENST00000265260		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000265340	ENST00000469941		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000265340	ENST00000296024		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000265340	ENST00000486406		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000506438	ENST00000265260		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000506438	ENST00000469941		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000506438	ENST00000296024		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-intron	ENST00000506438	ENST00000486406		ChiTaRS3.1			BM825172	PITX1	chr5	134363889	-	PCNP	chr3	101295411	-
intron-5UTR	ENST00000023939	ENST00000316448		ChiTaRS3.1			BU839262	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000395881	ENST00000316448		ChiTaRS3.1			BU839262	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000357348	ENST00000316448		ChiTaRS3.1			BU839262	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000484084	ENST00000316448		ChiTaRS3.1			BU839262	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-5UTR	ENST00000435342	ENST00000316448		ChiTaRS3.1			BU839262	RTFDC1	chr20	55089631	-	CALR	chr19	13049436	+
intron-intron	ENST00000383202	ENST00000438284		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000383202	ENST00000431010		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000383202	ENST00000397056		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-intron	ENST00000236698	ENST00000438284		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000236698	ENST00000431010		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000236698	ENST00000397056		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-intron	ENST00000434713	ENST00000438284		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000434713	ENST00000431010		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000434713	ENST00000397056		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-intron	ENST00000480733	ENST00000438284		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000480733	ENST00000431010		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000480733	ENST00000397056		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-intron	ENST00000536929	ENST00000438284		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000536929	ENST00000431010		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3UTR	ENST00000536929	ENST00000397056		ChiTaRS3.1			AW390202	STAG1	chr3	136381159	-	HRH1	chr3	11302982	+
intron-3CDS	ENST00000361611	ENST00000361611		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000361611	ENST00000493471		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000361611	ENST00000460922		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000361611	ENST00000425762		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3CDS	ENST00000493471	ENST00000361611		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000493471	ENST00000493471		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000493471	ENST00000460922		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000493471	ENST00000425762		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3CDS	ENST00000460922	ENST00000361611		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000460922	ENST00000493471		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000460922	ENST00000460922		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000460922	ENST00000425762		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3CDS	ENST00000425762	ENST00000361611		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000425762	ENST00000493471		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000425762	ENST00000460922		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-3UTR	ENST00000425762	ENST00000425762		ChiTaRS3.1			BF761582	PSMB5	chr14	23495240	+	PSMB5	chr14	23495340	-
intron-intron	ENST00000535016	ENST00000560699		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000535016	ENST00000305901		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000535016	ENST00000561401		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
3UTR-intron	ENST00000265872	ENST00000560699		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
3UTR-intron	ENST00000265872	ENST00000305901		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
3UTR-intron	ENST00000265872	ENST00000561401		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000543719	ENST00000560699		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000543719	ENST00000305901		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000543719	ENST00000561401		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000483264	ENST00000560699		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000483264	ENST00000305901		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-intron	ENST00000483264	ENST00000561401		ChiTaRS3.1			CB162622	CCAR1	chr10	70551540	+	ONECUT1	chr15	53064338	-
intron-5UTR	ENST00000476233	ENST00000476233		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-3UTR	ENST00000476233	ENST00000354667		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-intron	ENST00000476233	ENST00000356674		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-5UTR	ENST00000354667	ENST00000476233		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-3UTR	ENST00000354667	ENST00000354667		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-intron	ENST00000354667	ENST00000356674		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-5UTR	ENST00000356674	ENST00000476233		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-3UTR	ENST00000356674	ENST00000354667		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-intron	ENST00000356674	ENST00000356674		ChiTaRS3.1			AA744342	HNRNPA2B1	chr7	26230994	-	HNRNPA2B1	chr7	26231262	+
intron-intron	ENST00000262903	ENST00000304519		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000262903	ENST00000524025		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000369125	ENST00000304519		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000369125	ENST00000524025		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000517995	ENST00000304519		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000517995	ENST00000524025		ChiTaRS3.1			BY998920	HACE1	chr6	105180431	+	C8orf74	chr8	10543145	+
intron-intron	ENST00000216962	ENST00000216962		ChiTaRS3.1			BF908082	PYGB	chr20	25231048	-	PYGB	chr20	25231278	+
intron-intron	ENST00000216962	ENST00000471359		ChiTaRS3.1			BF908082	PYGB	chr20	25231048	-	PYGB	chr20	25231278	+
intron-intron	ENST00000471359	ENST00000216962		ChiTaRS3.1			BF908082	PYGB	chr20	25231048	-	PYGB	chr20	25231278	+
intron-intron	ENST00000471359	ENST00000471359		ChiTaRS3.1			BF908082	PYGB	chr20	25231048	-	PYGB	chr20	25231278	+
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000548589	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000548589	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000548589	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000548589	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000552699	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000552699	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000552699	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000552699	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000267115	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000267115	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000267115	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000267115	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000549385	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000549385	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000549385	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000549385	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000423828	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000423828	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000423828	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
3UTR-intron	ENST00000423828	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000395006	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000395006	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000395006	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000395006	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000547798	ENST00000552699		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000547798	ENST00000549385		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000547798	ENST00000395006		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000547798	ENST00000547798		ChiTaRS3.1			BG818072	TMBIM6	chr12	50158617	-	TMBIM6	chr12	50158656	+
intron-intron	ENST00000356924	ENST00000306156		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000356924	ENST00000467135		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000356924	ENST00000394874		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000298816	ENST00000306156		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000298816	ENST00000467135		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000298816	ENST00000394874		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557554	ENST00000306156		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557554	ENST00000467135		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557554	ENST00000394874		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557588	ENST00000306156		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557588	ENST00000467135		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
intron-intron	ENST00000557588	ENST00000394874		ChiTaRS3.1			BF367112	ABCD4	chr14	74766227	+	PRKCE	chr2	45921237	+
5CDS-intron	ENST00000348520	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000380038	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000389744	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000557575	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000553286	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000347839	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000555836	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000334553	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000246489	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000557450	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000554280	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000452929	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000445352	ENST00000369219		ChiTaRS3.1			CR738692	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
intron-3CDS	ENST00000461783	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000461783	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000461783	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000461783	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000449545	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000367174	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000456144	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000318981	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000360366	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000529824	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000456877	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000528391	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000399763		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000399766		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000374343		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000275246	ENST00000470035		ChiTaRS3.1			BI850472	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000330574	ENST00000155674		ChiTaRS3.1			BI037652	INTS5	chr11	62414902	+	CECR5	chr22	17619163	-
intron-3CDS	ENST00000330574	ENST00000336737		ChiTaRS3.1			BI037652	INTS5	chr11	62414902	+	CECR5	chr22	17619163	-
intron-3CDS	ENST00000330574	ENST00000399852		ChiTaRS3.1			BI037652	INTS5	chr11	62414902	+	CECR5	chr22	17619163	-
intron-intron	ENST00000330574	ENST00000480451		ChiTaRS3.1			BI037652	INTS5	chr11	62414902	+	CECR5	chr22	17619163	-
intron-intron	ENST00000377869	ENST00000471014		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000377869	ENST00000405570		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000377869	ENST00000396183		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000377869	ENST00000349496		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000377869	ENST00000453024		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000377869	ENST00000396185		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000471014		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000405570		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000396183		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000349496		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000453024		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000220616	ENST00000396185		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000471014		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000405570		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000396183		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000349496		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000453024		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000542445	ENST00000396185		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000471014		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000405570		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000396183		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000349496		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000453024		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000519543	ENST00000396185		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000471014		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000405570		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000396183		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000349496		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000453024		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
intron-intron	ENST00000522523	ENST00000396185		ChiTaRS3.1			BI003062	TG	chr8	133907316	-	CTNNB1	chr3	41279542	+
In-frame	ENST00000372692	ENST00000296474		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
Frame-shit	ENST00000372692	ENST00000344206		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
In-frame	ENST00000409104	ENST00000296474		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
Frame-shit	ENST00000409104	ENST00000344206		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
In-frame	ENST00000322030	ENST00000296474		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
Frame-shit	ENST00000322030	ENST00000344206		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
In-frame	ENST00000372688	ENST00000296474		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
Frame-shit	ENST00000372688	ENST00000344206		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
3UTR-3CDS	ENST00000477806	ENST00000296474		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
3UTR-3CDS	ENST00000477806	ENST00000344206		ChiTaRS3.1			BE932152	SET	chr9	131454279	+	MST1R	chr3	49924911	-
intron-intron	ENST00000353487	ENST00000505658		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
intron-intron	ENST00000353487	ENST00000393227		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
intron-intron	ENST00000353487	ENST00000311571		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
intron-intron	ENST00000353487	ENST00000240304		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
intron-intron	ENST00000353487	ENST00000544170		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
intron-intron	ENST00000353487	ENST00000503798		ChiTaRS3.1			AW853262	SPPL3	chr12	121248082	-	LUC7L3	chr17	48811027	+
In-frame	ENST00000344921	ENST00000355666		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000344921	ENST00000399017		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000344921	ENST00000354749		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-3UTR	ENST00000344921	ENST00000479930		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000344921	ENST00000540756		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000344921	ENST00000399010		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000263121	ENST00000355666		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000263121	ENST00000399017		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000263121	ENST00000354749		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-3UTR	ENST00000263121	ENST00000479930		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000263121	ENST00000540756		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000263121	ENST00000399010		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407422	ENST00000355666		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407422	ENST00000399017		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407422	ENST00000354749		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-3UTR	ENST00000407422	ENST00000479930		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000407422	ENST00000540756		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000407422	ENST00000399010		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407082	ENST00000355666		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407082	ENST00000399017		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
In-frame	ENST00000407082	ENST00000354749		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-3UTR	ENST00000407082	ENST00000479930		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000407082	ENST00000540756		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
5CDS-intron	ENST00000407082	ENST00000399010		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-3CDS	ENST00000477836	ENST00000355666		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-3CDS	ENST00000477836	ENST00000399017		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-3CDS	ENST00000477836	ENST00000354749		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-3UTR	ENST00000477836	ENST00000479930		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-intron	ENST00000477836	ENST00000540756		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
intron-intron	ENST00000477836	ENST00000399010		ChiTaRS3.1			BI050912	SMARCB1	chr22	24175831	+	TTC3	chr21	38538777	-
3UTR-intron	ENST00000538352	ENST00000254636		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000538352	ENST00000449247		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000538352	ENST00000410111		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000538352	ENST00000442664		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000538352	ENST00000409051		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000538352	ENST00000490238		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000254636		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000449247		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000410111		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000442664		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000409051		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-intron	ENST00000025399	ENST00000490238		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000254636		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000449247		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000410111		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000442664		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000409051		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
3UTR-intron	ENST00000419869	ENST00000490238		ChiTaRS3.1			AW604682	STRAP	chr12	16055979	+	IMMT	chr2	86384370	+
intron-3CDS	ENST00000344034	ENST00000588072		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000344034	ENST00000317235		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000344034	ENST00000309976		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000344034	ENST00000344987		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-intron	ENST00000344034	ENST00000592755		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-intron	ENST00000344034	ENST00000399978		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000350803	ENST00000588072		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000350803	ENST00000317235		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000350803	ENST00000309976		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-3CDS	ENST00000350803	ENST00000344987		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-intron	ENST00000350803	ENST00000592755		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
intron-intron	ENST00000350803	ENST00000399978		ChiTaRS3.1			AW013782	PPM1G	chr2	27606412	-	MPPE1	chr18	11886924	+
In-frame	ENST00000426496	ENST00000242848		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
Frame-shit	ENST00000426496	ENST00000378921		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000426496	ENST00000282007		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
5CDS-intron	ENST00000426496	ENST00000470308		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000392078	ENST00000242848		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
Frame-shit	ENST00000392078	ENST00000378921		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000392078	ENST00000282007		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
5CDS-intron	ENST00000392078	ENST00000470308		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
intron-3CDS	ENST00000476522	ENST00000242848		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
intron-3CDS	ENST00000476522	ENST00000378921		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
intron-3CDS	ENST00000476522	ENST00000282007		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
intron-intron	ENST00000476522	ENST00000470308		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000367742	ENST00000242848		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
Frame-shit	ENST00000367742	ENST00000378921		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000367742	ENST00000282007		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
5CDS-intron	ENST00000367742	ENST00000470308		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000338920	ENST00000242848		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
Frame-shit	ENST00000338920	ENST00000378921		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
In-frame	ENST00000338920	ENST00000282007		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
5CDS-intron	ENST00000338920	ENST00000470308		ChiTaRS3.1			AW003072	PRRC2C	chr1	171505331	-	ZC3H13	chr13	46543047	+
3UTR-3CDS	ENST00000471231	ENST00000471231		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000338343		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000562319		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000380310		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000471231	ENST00000565690		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000471231		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000338343		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000562319		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000380310		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000338343	ENST00000565690		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000471231		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000338343		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000562319		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000380310		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000562319	ENST00000565690		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000471231		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000338343		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000562319		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000380310		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
3UTR-3CDS	ENST00000380310	ENST00000565690		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000471231		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000338343		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000562319		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000380310		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3CDS	ENST00000565690	ENST00000565690		ChiTaRS3.1			AV731672	FBXL19	chr16	30960015	-	FBXL19	chr16	30958413	+
intron-3UTR	ENST00000343380	ENST00000343380		ChiTaRS3.1			BG252912	E2F1	chr20	32264041	+	E2F1	chr20	32264011	-
Frame-shit	ENST00000361204	ENST00000346145		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
Frame-shit	ENST00000361204	ENST00000349607		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
Frame-shit	ENST00000361204	ENST00000463781		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
Frame-shit	ENST00000361204	ENST00000475231		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
5CDS-intron	ENST00000361204	ENST00000478685		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
3UTR-3CDS	ENST00000491541	ENST00000346145		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
3UTR-3CDS	ENST00000491541	ENST00000349607		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
3UTR-3CDS	ENST00000491541	ENST00000463781		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
3UTR-3CDS	ENST00000491541	ENST00000475231		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
3UTR-intron	ENST00000491541	ENST00000478685		ChiTaRS3.1			BE712652	SREBF2	chr22	42299113	-	MUC4	chr3	195475897	-
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000312675		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000543006		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000312675		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000543006		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000312675		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000543006		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000312675		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000543006		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			BQ321082	LPP	chr3	187920361	+	LPP	chr3	187919748	+
In-frame	ENST00000397278	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
Frame-shit	ENST00000426053	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
Frame-shit	ENST00000422706	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
Frame-shit	ENST00000319136	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
Frame-shit	ENST00000347595	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
Frame-shit	ENST00000397279	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
intron-3CDS	ENST00000440669	ENST00000244333		ChiTaRS3.1			BE717812	APOL1	chr22	36661664	+	LYPD3	chr19	43965849	+
intron-intron	ENST00000382865	ENST00000580974		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000382865	ENST00000299954		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000382865	ENST00000335257		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000382865	ENST00000581322		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000511885	ENST00000580974		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000511885	ENST00000299954		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000511885	ENST00000335257		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000511885	ENST00000581322		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000515357	ENST00000580974		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000515357	ENST00000299954		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000515357	ENST00000335257		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000515357	ENST00000581322		ChiTaRS3.1			AW902492	POLN	chr4	2091761	-	PITPNC1	chr17	65479397	+
intron-intron	ENST00000375592	ENST00000375592		ChiTaRS3.1			AW948862	FBXO42	chr1	16621937	-	FBXO42	chr1	16622886	-
intron-intron	ENST00000375592	ENST00000478089		ChiTaRS3.1			AW948862	FBXO42	chr1	16621937	-	FBXO42	chr1	16622886	-
intron-intron	ENST00000478089	ENST00000375592		ChiTaRS3.1			AW948862	FBXO42	chr1	16621937	-	FBXO42	chr1	16622886	-
intron-intron	ENST00000478089	ENST00000478089		ChiTaRS3.1			AW948862	FBXO42	chr1	16621937	-	FBXO42	chr1	16622886	-
intron-3UTR	ENST00000264712	ENST00000264712		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000264712	ENST00000405914		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000264712	ENST00000496378		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-3UTR	ENST00000405914	ENST00000264712		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000405914	ENST00000405914		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000405914	ENST00000496378		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-3UTR	ENST00000496378	ENST00000264712		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000496378	ENST00000405914		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
intron-intron	ENST00000496378	ENST00000496378		ChiTaRS3.1			BF529152	KIF3C	chr2	26150968	+	KIF3C	chr2	26150962	-
3UTR-3CDS	ENST00000392935	ENST00000295598		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000392935	ENST00000537345		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000392935	ENST00000369496		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000392935	ENST00000491156		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000295598		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000537345		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000369496		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000522572	ENST00000491156		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000295598		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000537345		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000369496		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3UTR	ENST00000521158	ENST00000491156		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000295598		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000537345		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000369496		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000022615	ENST00000491156		ChiTaRS3.1			BQ303322	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-5UTR	ENST00000261880	ENST00000261880		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000261880	ENST00000538028		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000261880	ENST00000561452		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000261880	ENST00000542650		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000538028	ENST00000261880		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000538028	ENST00000538028		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000538028	ENST00000561452		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000538028	ENST00000542650		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000561452	ENST00000261880		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000561452	ENST00000538028		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000561452	ENST00000561452		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000561452	ENST00000542650		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000542650	ENST00000261880		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000542650	ENST00000538028		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-5UTR	ENST00000542650	ENST00000561452		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-intron	ENST00000542650	ENST00000542650		ChiTaRS3.1			BP354992	AAGAB	chr15	67494034	-	AAGAB	chr15	67547003	-
intron-3UTR	ENST00000393958	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393958	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393958	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393958	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393958	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393960	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393960	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393960	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000355677	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000355677	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000355677	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000524491	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000524491	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000524491	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000529047	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000529047	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000529047	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393955	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000393955	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000393955	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000417961		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000361573		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000528224	ENST00000541138		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-intron	ENST00000528224	ENST00000539601		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-3UTR	ENST00000528224	ENST00000490250		ChiTaRS3.1			AI080632	PC	chr11	66625050	-	SLC9A8	chr20	48507880	-
intron-5UTR	ENST00000527132	ENST00000527132		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000527132	ENST00000396505		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000527132	ENST00000326932		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000527132	ENST00000525493		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000527132	ENST00000450094		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-5UTR	ENST00000396505	ENST00000527132		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000396505	ENST00000396505		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000396505	ENST00000326932		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000396505	ENST00000525493		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000396505	ENST00000450094		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-5UTR	ENST00000326932	ENST00000527132		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000326932	ENST00000396505		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000326932	ENST00000326932		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000326932	ENST00000525493		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000326932	ENST00000450094		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-5UTR	ENST00000525493	ENST00000527132		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000525493	ENST00000396505		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000525493	ENST00000326932		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000525493	ENST00000525493		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000525493	ENST00000450094		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-5UTR	ENST00000450094	ENST00000527132		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000450094	ENST00000396505		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000450094	ENST00000326932		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000450094	ENST00000525493		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-intron	ENST00000450094	ENST00000450094		ChiTaRS3.1			BQ640482	DKK3	chr11	11985352	-	DKK3	chr11	11985809	-
intron-3UTR	ENST00000377658	ENST00000377658		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000377658	ENST00000377663		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000377658	ENST00000467612		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000377658	ENST00000463043		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000377663	ENST00000377658		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000377663	ENST00000377663		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000377663	ENST00000467612		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000377663	ENST00000463043		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000467612	ENST00000377658		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000467612	ENST00000377663		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000467612	ENST00000467612		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000467612	ENST00000463043		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000463043	ENST00000377658		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-3UTR	ENST00000463043	ENST00000377663		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000463043	ENST00000467612		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000463043	ENST00000463043		ChiTaRS3.1			BE167362	KLHL21	chr1	6652526	+	KLHL21	chr1	6652734	-
intron-intron	ENST00000547303	ENST00000254108		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000547303	ENST00000380244		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000547303	ENST00000568685		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000547303	ENST00000474990		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000551116	ENST00000254108		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000551116	ENST00000380244		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000551116	ENST00000568685		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000551116	ENST00000474990		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000346473	ENST00000254108		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000346473	ENST00000380244		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000346473	ENST00000568685		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000346473	ENST00000474990		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000552740	ENST00000254108		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000552740	ENST00000380244		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000552740	ENST00000568685		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-intron	ENST00000552740	ENST00000474990		ChiTaRS3.1			AJ301614	DDIT3	chr12	57912909	-	FUS	chr16	31202469	+
intron-3UTR	ENST00000262013	ENST00000389682		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000262013	ENST00000498545		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000262013	ENST00000536142		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000262013	ENST00000409193		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-3UTR	ENST00000505279	ENST00000389682		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000505279	ENST00000498545		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000505279	ENST00000536142		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000505279	ENST00000409193		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-3UTR	ENST00000357122	ENST00000389682		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000357122	ENST00000498545		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000357122	ENST00000536142		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000357122	ENST00000409193		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-3UTR	ENST00000509724	ENST00000389682		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000509724	ENST00000498545		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000509724	ENST00000536142		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000509724	ENST00000409193		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-3UTR	ENST00000510283	ENST00000389682		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000510283	ENST00000498545		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000510283	ENST00000536142		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000510283	ENST00000409193		ChiTaRS3.1			BQ716562	SPAG9	chr17	49100253	-	TSN	chr2	122523912	+
intron-intron	ENST00000362227	ENST00000453159		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000413862		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000608690		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000608622		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000608632		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000608641		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000362227	ENST00000427491		ChiTaRS3.1			BG005082	MIR503HG	chrX	133678511	-	CBR3-AS1	chr21	37510527	-
intron-intron	ENST00000405709	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000405709	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000331762	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000452895	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000415362	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000447215	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000437687	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000489381	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000393923		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000412622		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000431670		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000393925		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000481953		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000495180		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000478922		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000477695		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-intron	ENST00000450877	ENST00000470699		ChiTaRS3.1			BP394692	IMMP2L	chr7	110990320	-	PHLDB2	chr3	111649024	+
intron-3CDS	ENST00000313368	ENST00000258484		ChiTaRS3.1			BE837002	TAF7	chr5	140700249	+	EPC2	chr2	149526741	+
intron-intron	ENST00000313368	ENST00000409654		ChiTaRS3.1			BE837002	TAF7	chr5	140700249	+	EPC2	chr2	149526741	+
intron-3CDS	ENST00000206423	ENST00000360839		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000206423	ENST00000297183		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000206423	ENST00000394723		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000206423	ENST00000394722		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000206423	ENST00000462121		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000206423	ENST00000544120		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000439685	ENST00000360839		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000439685	ENST00000297183		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000439685	ENST00000394723		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000439685	ENST00000394722		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000439685	ENST00000462121		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000439685	ENST00000544120		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000475181	ENST00000360839		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000475181	ENST00000297183		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000475181	ENST00000394723		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000475181	ENST00000394722		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000475181	ENST00000462121		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-intron	ENST00000475181	ENST00000544120		ChiTaRS3.1			BE707292	CCDC80	chr3	112317995	-	ANKHD1	chr5	139889741	+
intron-3CDS	ENST00000544600	ENST00000409532		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000544600	ENST00000264107		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000544600	ENST00000343713		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000544600	ENST00000264106		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000544600	ENST00000375221		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000544600	ENST00000409080		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000409532		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000264107		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000343713		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000264106		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000375221		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
intron-3CDS	ENST00000268122	ENST00000409080		ChiTaRS3.1			AI141812	RHCG	chr15	90014889	+	ITGA6	chr2	173349949	-
5CDS-5UTR	ENST00000526406	ENST00000526406		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000526406	ENST00000533063		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000526406	ENST00000262580		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000533063	ENST00000526406		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000533063	ENST00000533063		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000533063	ENST00000262580		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000262580	ENST00000526406		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000262580	ENST00000533063		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
5CDS-5UTR	ENST00000262580	ENST00000262580		ChiTaRS3.1			BG747422	GSDMD	chr8	144641997	+	GSDMD	chr8	144640588	+
intron-3CDS	ENST00000391967	ENST00000391967		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-3CDS	ENST00000391967	ENST00000367313		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-5UTR	ENST00000391967	ENST00000488842		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-3CDS	ENST00000367313	ENST00000391967		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-3CDS	ENST00000367313	ENST00000367313		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-5UTR	ENST00000367313	ENST00000488842		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-3CDS	ENST00000488842	ENST00000391967		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-3CDS	ENST00000488842	ENST00000367313		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
intron-5UTR	ENST00000488842	ENST00000488842		ChiTaRS3.1			AW389752	LAD1	chr1	201351457	+	LAD1	chr1	201352287	-
3UTR-3CDS	ENST00000392341	ENST00000392341		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000392341	ENST00000582743		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392341	ENST00000584781		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392341	ENST00000392339		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392341	ENST00000581287		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000582743	ENST00000392341		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000582743	ENST00000582743		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000582743	ENST00000584781		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000582743	ENST00000392339		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000582743	ENST00000581287		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-3CDS	ENST00000584781	ENST00000392341		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-3CDS	ENST00000584781	ENST00000582743		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-3UTR	ENST00000584781	ENST00000584781		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-3UTR	ENST00000584781	ENST00000392339		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-3UTR	ENST00000584781	ENST00000581287		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000392339	ENST00000392341		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000392339	ENST00000582743		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392339	ENST00000584781		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392339	ENST00000392339		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000392339	ENST00000581287		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000581287	ENST00000392341		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3CDS	ENST00000581287	ENST00000582743		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000581287	ENST00000584781		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000581287	ENST00000392339		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
3UTR-3UTR	ENST00000581287	ENST00000581287		ChiTaRS3.1			AI128892	SLC16A3	chr17	80196935	+	SLC16A3	chr17	80194689	+
intron-intron	ENST00000540687	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000540687	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000540687	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000566220	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000566220	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-3UTR	ENST00000519077	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
3UTR-intron	ENST00000519077	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000521091	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000521091	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000569149	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569149	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000563812	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000563812	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000602393	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602393	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000602971	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000602971	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000540687		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000566220		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-3UTR	ENST00000569384	ENST00000519077		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000521091		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000569149		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000563812		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000602393		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000602971		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000569384	ENST00000569384		ChiTaRS3.1			AA742852	TUG1	chr22	31373340	+	TUG1	chr22	31373466	-
intron-intron	ENST00000376509	ENST00000376509		ChiTaRS3.1			AW364922	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000376509	ENST00000485431		ChiTaRS3.1			AW364922	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-intron	ENST00000485431	ENST00000376509		ChiTaRS3.1			AW364922	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000485431	ENST00000485431		ChiTaRS3.1			AW364922	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY387662	MLLT3	chr9	20413320	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425249	BCR	chr22	23633428	+	ABL1	chr9	133651603	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425249	BCR	chr22	23633428	+	ABL1	chr9	133651603	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425249	BCR	chr22	23633428	+	ABL1	chr9	133651603	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425249	BCR	chr22	23633428	+	ABL1	chr9	133651603	+
intron-3UTR	ENST00000261497	ENST00000219097		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000261497	ENST00000568364		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-3UTR	ENST00000261497	ENST00000566860		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000261497	ENST00000575571		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-3UTR	ENST00000537526	ENST00000219097		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000537526	ENST00000568364		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-3UTR	ENST00000537526	ENST00000566860		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000537526	ENST00000575571		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-3UTR	ENST00000455117	ENST00000219097		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000455117	ENST00000568364		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-3UTR	ENST00000455117	ENST00000566860		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-intron	ENST00000455117	ENST00000575571		ChiTaRS3.1			BC009452	USP22	chr17	20904452	-	ORC6	chr16	46731973	+
intron-5UTR	ENST00000360319	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000360319	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000360319	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000422373	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000422373	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000422373	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000369850	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369850	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369850	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000369856	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369856	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369856	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000344736	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000344736	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000344736	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000498491	ENST00000358372		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000498491	ENST00000337387		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000498491	ENST00000494513		ChiTaRS3.1			AK127822	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
3UTR-3CDS	ENST00000326685	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000326685	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000326685	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000326685	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000326685	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000356541	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000356541	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000356541	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000356541	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000356541	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000309868	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000309868	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000309868	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000309868	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000309868	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000506113	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000506113	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-3CDS	ENST00000506113	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000506113	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
3UTR-intron	ENST00000506113	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000504238	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000504238	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000504238	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000504238	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000504238	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000508983	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000508983	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000508983	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000508983	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000508983	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000517451	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000517451	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000517451	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000517451	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000517451	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000519549	ENST00000380050		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000519549	ENST00000265741		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000519549	ENST00000406263		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000519549	ENST00000436577		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-intron	ENST00000519549	ENST00000496279		ChiTaRS3.1			BE178202	ABLIM3	chr5	148638027	+	CDK14	chr7	90377073	-
intron-3CDS	ENST00000520500	ENST00000297268		ChiTaRS3.1			BF809982	PPP2CB	chr8	30643738	-	COL1A2	chr7	94047103	-
intron-3CDS	ENST00000221138	ENST00000297268		ChiTaRS3.1			BF809982	PPP2CB	chr8	30643738	-	COL1A2	chr7	94047103	-
intron-3CDS	ENST00000518564	ENST00000297268		ChiTaRS3.1			BF809982	PPP2CB	chr8	30643738	-	COL1A2	chr7	94047103	-
5CDS-3UTR	ENST00000534397	ENST00000336787		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-3UTR	ENST00000534397	ENST00000396307		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000534397	ENST00000564609		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000534397	ENST00000569493		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000534397	ENST00000561545		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-3UTR	ENST00000278282	ENST00000336787		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-3UTR	ENST00000278282	ENST00000396307		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000278282	ENST00000564609		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000278282	ENST00000569493		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
5CDS-intron	ENST00000278282	ENST00000561545		ChiTaRS3.1			BU676932	SCGB1A1	chr11	62189839	-	RAB27A	chr15	55496525	-
3UTR-3CDS	ENST00000001008	ENST00000265069		ChiTaRS3.1			AI652182	FKBP4	chr12	2913028	-	ZFR	chr5	32355973	+
3UTR-5UTR	ENST00000001008	ENST00000510369		ChiTaRS3.1			AI652182	FKBP4	chr12	2913028	-	ZFR	chr5	32355973	+
intron-3CDS	ENST00000540260	ENST00000265069		ChiTaRS3.1			AI652182	FKBP4	chr12	2913028	-	ZFR	chr5	32355973	+
intron-5UTR	ENST00000540260	ENST00000510369		ChiTaRS3.1			AI652182	FKBP4	chr12	2913028	-	ZFR	chr5	32355973	+
intron-intron	ENST00000371497	ENST00000371497		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000371497	ENST00000603338		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000371497	ENST00000329613		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000371497		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000603338		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000329613		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000371497		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000603338		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000329613		ChiTaRS3.1			AI631192	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000314641	ENST00000455015		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000314641	ENST00000336832		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000314641	ENST00000423850		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000314641	ENST00000383817		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000314641	ENST00000430427		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000314641	ENST00000443115		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000455015		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000336832		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000423850		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000383817		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000430427		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000336775	ENST00000443115		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000455015		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000336832		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000423850		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000383817		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000430427		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-intron	ENST00000446408	ENST00000443115		ChiTaRS3.1			BC021072	BVES	chr6	105547328	+	CIDEC	chr3	10028467	-
intron-3UTR	ENST00000231061	ENST00000331134		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000231061	ENST00000374747		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000231061	ENST00000539314		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000231061	ENST00000572760		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000231061	ENST00000573876		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000231061	ENST00000574344		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-3UTR	ENST00000537849	ENST00000331134		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000537849	ENST00000374747		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000537849	ENST00000539314		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000537849	ENST00000572760		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000537849	ENST00000573876		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000537849	ENST00000574344		ChiTaRS3.1			AA426012	SPARC	chr5	151042127	+	NPLOC4	chr17	79524285	+
intron-intron	ENST00000341500	ENST00000341500		ChiTaRS3.1			BX114892	INSR	chr19	7136874	+	INSR	chr19	7134768	+
intron-intron	ENST00000341500	ENST00000302850		ChiTaRS3.1			BX114892	INSR	chr19	7136874	+	INSR	chr19	7134768	+
intron-intron	ENST00000302850	ENST00000341500		ChiTaRS3.1			BX114892	INSR	chr19	7136874	+	INSR	chr19	7134768	+
intron-intron	ENST00000302850	ENST00000302850		ChiTaRS3.1			BX114892	INSR	chr19	7136874	+	INSR	chr19	7134768	+
intron-intron	ENST00000248594	ENST00000248594		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000248594	ENST00000415482		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000248594	ENST00000435495		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000415482	ENST00000248594		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000415482	ENST00000415482		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000415482	ENST00000435495		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000435495	ENST00000248594		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000435495	ENST00000415482		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000435495	ENST00000435495		ChiTaRS3.1			CV409712	PTPN12	chr7	77176912	-	PTPN12	chr7	77176697	+
intron-intron	ENST00000417009	ENST00000285419		ChiTaRS3.1			BF904112	SHFM1	chr7	96331448	+	TMEM55A	chr8	92046922	-
intron-intron	ENST00000444799	ENST00000285419		ChiTaRS3.1			BF904112	SHFM1	chr7	96331448	+	TMEM55A	chr8	92046922	-
intron-intron	ENST00000413065	ENST00000285419		ChiTaRS3.1			BF904112	SHFM1	chr7	96331448	+	TMEM55A	chr8	92046922	-
intron-intron	ENST00000248566	ENST00000285419		ChiTaRS3.1			BF904112	SHFM1	chr7	96331448	+	TMEM55A	chr8	92046922	-
intron-intron	ENST00000493858	ENST00000285419		ChiTaRS3.1			BF904112	SHFM1	chr7	96331448	+	TMEM55A	chr8	92046922	-
intron-intron	ENST00000283558	ENST00000283558		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375630		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000487903		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375645		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000419448		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000283558		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375630		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000487903		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375645		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000419448		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000283558		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375630		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000487903		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375645		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000419448		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000283558		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375630		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000487903		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375645		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000419448		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000283558		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375630		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000487903		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375645		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000419448		ChiTaRS3.1			AA826222	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000579192	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000380358		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000358181		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000330494		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000570758		ChiTaRS3.1			AI669542	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
3UTR-intron	ENST00000406961	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-5UTR	ENST00000406961	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000406961	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000406961	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000406961	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000406961	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000406961	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-5UTR	ENST00000469850	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000469850	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-5UTR	ENST00000405141	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000405141	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-5UTR	ENST00000407230	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000407230	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-5UTR	ENST00000538539	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000538539	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-5UTR	ENST00000288599	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000288599	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-5UTR	ENST00000348332	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000348332	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000465357		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-5UTR	ENST00000395856	ENST00000539517		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000267422		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000344429		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000547619		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000574031		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
3UTR-intron	ENST00000395856	ENST00000551754		ChiTaRS3.1			BX099622	NCOA1	chr2	24991843	+	NOVA1	chr14	27066939	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266521	EWSR1	chr22	29685527	+	FLI1	chr11	128664435	+
intron-intron	ENST00000605917	ENST00000605917		ChiTaRS3.1			BX487262	CASC15	chr6	21781903	-	CASC15	chr6	21781543	+
intron-intron	ENST00000415922	ENST00000555245		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000415922	ENST00000556605		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000415922	ENST00000336643		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-3UTR	ENST00000415922	ENST00000031146		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000415922	ENST00000557046		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000471278	ENST00000555245		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000471278	ENST00000556605		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000471278	ENST00000336643		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-3UTR	ENST00000471278	ENST00000031146		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000471278	ENST00000557046		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000461899	ENST00000555245		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000461899	ENST00000556605		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000461899	ENST00000336643		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-3UTR	ENST00000461899	ENST00000031146		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-intron	ENST00000461899	ENST00000557046		ChiTaRS3.1			AW889882	ZNF322	chr6	26658721	+	SLC39A9	chr14	69928231	+
intron-3UTR	ENST00000356495	ENST00000356495		ChiTaRS3.1			BF767812	PIGR	chr1	207104902	+	PIGR	chr1	207101906	+
intron-intron	ENST00000356495	ENST00000487208		ChiTaRS3.1			BF767812	PIGR	chr1	207104902	+	PIGR	chr1	207101906	+
intron-3UTR	ENST00000487208	ENST00000356495		ChiTaRS3.1			BF767812	PIGR	chr1	207104902	+	PIGR	chr1	207101906	+
intron-intron	ENST00000487208	ENST00000487208		ChiTaRS3.1			BF767812	PIGR	chr1	207104902	+	PIGR	chr1	207101906	+
intron-3UTR	ENST00000318560	ENST00000377559		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-3UTR	ENST00000318560	ENST00000265459		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-3UTR	ENST00000318560	ENST00000301894		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-3UTR	ENST00000318560	ENST00000377551		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-3UTR	ENST00000318560	ENST00000409571		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-intron	ENST00000318560	ENST00000496291		ChiTaRS3.1			BM685192	ABL1	chr9	133717316	+	NRXN2	chr11	64374264	+
intron-3UTR	ENST00000482253	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000482253	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000482253	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000609116	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000609116	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000609116	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000370197	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000370197	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000370197	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000370198	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000370198	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000370198	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000426398	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000426398	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000426398	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000394184	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000394184	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000394184	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3UTR	ENST00000541987	ENST00000326648		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000541987	ENST00000416172		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-intron	ENST00000541987	ENST00000559364		ChiTaRS3.1			BF742982	PTBP2	chr1	97232474	-	ZNF609	chr15	64978180	-
intron-3CDS	ENST00000310343	ENST00000293618		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000310343	ENST00000429001		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000310343	ENST00000398473		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000310343	ENST00000518444		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000310343	ENST00000347328		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000310343	ENST00000522085		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000310343	ENST00000518561		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000524655	ENST00000293618		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000524655	ENST00000429001		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000524655	ENST00000398473		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000524655	ENST00000518444		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000524655	ENST00000347328		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000524655	ENST00000522085		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000524655	ENST00000518561		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000392657	ENST00000293618		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000392657	ENST00000429001		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000392657	ENST00000398473		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000392657	ENST00000518444		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000392657	ENST00000347328		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000392657	ENST00000522085		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000392657	ENST00000518561		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000527272	ENST00000293618		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000527272	ENST00000429001		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000527272	ENST00000398473		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000527272	ENST00000518444		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-3CDS	ENST00000527272	ENST00000347328		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000527272	ENST00000522085		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000527272	ENST00000518561		ChiTaRS3.1			BP417572	ARHGAP32	chr11	129056163	+	LARP4	chr12	50867893	+
intron-intron	ENST00000488834	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000488834	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000488834	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000488834	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000488834	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000488834	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000488834	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000474597	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000474597	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000474597	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000474597	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000474597	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000474597	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000474597	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000244763	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000244763	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000244763	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000244763	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000244763	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000244763	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000244763	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000397511	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000397511	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000397511	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000397511	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000397511	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000397511	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000397511	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000534851	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000534851	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000534851	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000534851	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000534851	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000534851	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000534851	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000489567	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000489567	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000489567	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000489567	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000489567	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000489567	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000489567	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000479365	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000479365	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000479365	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000479365	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000479365	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000479365	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000479365	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000462112	ENST00000418988		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000462112	ENST00000555531		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000462112	ENST00000419365		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-5UTR	ENST00000462112	ENST00000524606		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000462112	ENST00000396394		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000462112	ENST00000396393		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-3UTR	ENST00000462112	ENST00000530457		ChiTaRS3.1			BP386202	SSR1	chr6	7281915	+	PSMA1	chr11	14526610	-
intron-intron	ENST00000534307	ENST00000448100		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000534307	ENST00000355969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000534307	ENST00000357119		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000534307	ENST00000369967		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000534307	ENST00000328969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000534307	ENST00000478385		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000448100		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000355969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000357119		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000369967		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000328969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000528302	ENST00000478385		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000448100		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000355969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000357119		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000369967		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000328969		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
5CDS-intron	ENST00000322535	ENST00000478385		ChiTaRS3.1			BQ301332	SF3B2	chr11	65829469	+	ZGPAT	chr20	62367525	-
intron-intron	ENST00000288709	ENST00000377093		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000288709	ENST00000263934		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000288709	ENST00000377086		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000288709	ENST00000377083		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000288709	ENST00000377081		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000288709	ENST00000465635		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000378412	ENST00000377093		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000378412	ENST00000263934		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000378412	ENST00000377086		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000378412	ENST00000377083		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000378412	ENST00000377081		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000378412	ENST00000465635		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000502556	ENST00000377093		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000502556	ENST00000263934		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000502556	ENST00000377086		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000502556	ENST00000377083		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000502556	ENST00000377081		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000502556	ENST00000465635		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000511099	ENST00000377093		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000511099	ENST00000263934		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-3UTR	ENST00000511099	ENST00000377086		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000511099	ENST00000377083		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000511099	ENST00000377081		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000511099	ENST00000465635		ChiTaRS3.1			AA676612	MMEL1	chr1	2562536	+	KIF1B	chr1	10436935	-
intron-intron	ENST00000381470	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000381470	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000381470	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000381470	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000381470	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000381470	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000432128	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000432128	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000432128	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000432128	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000432128	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000432128	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000443491	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000443491	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000443491	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000443491	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000443491	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000443491	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000517600	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000517600	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000517600	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000517600	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000517600	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000517600	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523782	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000523782	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523782	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523782	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523782	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523782	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000265800	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000265800	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000265800	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000265800	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000265800	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000265800	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000415253	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000415253	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000415253	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000415253	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000415253	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000415253	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000358242	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000358242	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000358242	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000358242	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000358242	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000358242	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523266	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000523266	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523266	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523266	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523266	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000523266	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000519907	ENST00000316005		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3UTR	ENST00000519907	ENST00000370521		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000519907	ENST00000370505		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000519907	ENST00000370513		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000519907	ENST00000544045		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-intron	ENST00000519907	ENST00000495119		ChiTaRS3.1			BP417512	DMTN	chr8	21927698	-	PKN2	chr1	89299434	+
intron-3CDS	ENST00000348956	ENST00000348956		ChiTaRS3.1			BP218932	CKB	chr14	103986496	-	CKB	chr14	103987738	-
intron-3UTR	ENST00000334082	ENST00000226091		ChiTaRS3.1			BF935692	HOMER1	chr5	78808692	-	EFNB3	chr17	7613903	+
intron-3UTR	ENST00000535690	ENST00000226091		ChiTaRS3.1			BF935692	HOMER1	chr5	78808692	-	EFNB3	chr17	7613903	+
intron-3UTR	ENST00000508576	ENST00000226091		ChiTaRS3.1			BF935692	HOMER1	chr5	78808692	-	EFNB3	chr17	7613903	+
intron-3UTR	ENST00000282260	ENST00000226091		ChiTaRS3.1			BF935692	HOMER1	chr5	78808692	-	EFNB3	chr17	7613903	+
intron-intron	ENST00000319622	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000319622	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000319622	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000319622	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565184	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565184	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565184	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565184	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000389093	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000389093	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000389093	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000389093	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000335181	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000335181	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000335181	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000335181	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568883	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568883	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568883	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568883	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000449901	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000449901	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000449901	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000449901	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565154	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565154	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565154	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000565154	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568459	ENST00000380262		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568459	ENST00000563694		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568459	ENST00000380255		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000568459	ENST00000565740		ChiTaRS3.1			BG959892	PKM	chr15	72491429	-	CNTROB	chr17	7852891	-
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050784	KMT2A	chr11	118355309	+	AFF1	chr4	87999277	+
intron-intron	ENST00000407991	ENST00000356316		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000318023		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000357568		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000349748		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000397163		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000397200		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000337571		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000569136		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000561817		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000397204		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000407991	ENST00000562199		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000356316		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000318023		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000357568		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000349748		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000397163		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000397200		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000337571		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000569136		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000561817		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000397204		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000520933	ENST00000562199		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000356316		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000318023		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000357568		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000349748		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000397163		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000397200		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000337571		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000569136		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000561817		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000397204		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-intron	ENST00000240132	ENST00000562199		ChiTaRS3.1			DA405532	CHRNA2	chr8	27336460	-	CAPN3	chr15	42699095	+
intron-3CDS	ENST00000515393	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000515393	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000515393	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000515393	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000515393	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000515393	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000429576	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000429576	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000429576	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000429576	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000429576	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000429576	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000312216	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000312216	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000312216	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000312216	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000312216	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000312216	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505208	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505208	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505208	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505208	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000505208	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000505208	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000514040	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000514040	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000514040	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000514040	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000514040	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000514040	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505078	ENST00000515393		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505078	ENST00000429576		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505078	ENST00000312216		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-3CDS	ENST00000505078	ENST00000505208		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000505078	ENST00000514040		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000505078	ENST00000505078		ChiTaRS3.1			CB069182	MCTP1	chr5	94256186	+	MCTP1	chr5	94248546	+
intron-intron	ENST00000263713	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000263713	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000263713	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000263713	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000263713	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000263713	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443902	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000331393	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000443124	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000452780	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000263713		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000443902		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000331393		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000443124		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000452780		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000488691	ENST00000488691		ChiTaRS3.1			AK023922	EPB41L5	chr2	120774710	+	EPB41L5	chr2	120771434	+
intron-intron	ENST00000324306	ENST00000324306		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000324306	ENST00000426572		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000324306	ENST00000535170		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000324306		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000426572		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000535170		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000324306		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000426572		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000535170		ChiTaRS3.1			BE080522	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000361204	ENST00000530157		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000525451		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000308162		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000527344		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000531407		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000524553		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000534769		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000361204	ENST00000531413		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000530157		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000525451		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000308162		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000527344		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000531407		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000524553		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000534769		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-intron	ENST00000491541	ENST00000531413		ChiTaRS3.1			AA651732	SREBF2	chr22	42269702	+	CFL1	chr11	65623494	-
intron-3UTR	ENST00000262189	ENST00000262189		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000262189	ENST00000355193		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000262189	ENST00000485655		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-intron	ENST00000262189	ENST00000485241		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000355193	ENST00000262189		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000355193	ENST00000355193		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000355193	ENST00000485655		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-intron	ENST00000355193	ENST00000485241		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485655	ENST00000262189		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485655	ENST00000355193		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485655	ENST00000485655		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-intron	ENST00000485655	ENST00000485241		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485241	ENST00000262189		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485241	ENST00000355193		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-3UTR	ENST00000485241	ENST00000485655		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-intron	ENST00000485241	ENST00000485241		ChiTaRS3.1			BE762382	KMT2C	chr7	151832546	+	KMT2C	chr7	151832830	-
intron-intron	ENST00000252108	ENST00000426820		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000252108	ENST00000369559		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000252108	ENST00000369554		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000252108	ENST00000369558		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000252108	ENST00000369561		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000252108	ENST00000369555		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000252108	ENST00000340480		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000252108	ENST00000369553		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000252108	ENST00000406344		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000431736	ENST00000426820		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000431736	ENST00000369559		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000431736	ENST00000369554		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000431736	ENST00000369558		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000431736	ENST00000369561		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000431736	ENST00000369555		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000431736	ENST00000340480		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000431736	ENST00000369553		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000431736	ENST00000406344		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000545354	ENST00000426820		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000545354	ENST00000369559		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000545354	ENST00000369554		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000545354	ENST00000369558		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000545354	ENST00000369561		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000545354	ENST00000369555		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000545354	ENST00000340480		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000545354	ENST00000369553		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-3UTR	ENST00000545354	ENST00000406344		ChiTaRS3.1			BE831592	UBE4A	chr11	118250895	-	HIPK1	chr1	114518387	-
intron-intron	ENST00000583129	ENST00000374023		ChiTaRS3.1			BG611302	MIR548O2	chr8	30105454	-	C6orf106	chr6	34659700	-
intron-intron	ENST00000583129	ENST00000374026		ChiTaRS3.1			BG611302	MIR548O2	chr8	30105454	-	C6orf106	chr6	34659700	-
intron-intron	ENST00000583129	ENST00000374021		ChiTaRS3.1			BG611302	MIR548O2	chr8	30105454	-	C6orf106	chr6	34659700	-
intron-intron	ENST00000473706	ENST00000377669		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000473706	ENST00000377666		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000473706	ENST00000472022		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000380834	ENST00000377669		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000380834	ENST00000377666		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000380834	ENST00000472022		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000260662	ENST00000377669		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000260662	ENST00000377666		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000260662	ENST00000472022		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000395845	ENST00000377669		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000395845	ENST00000377666		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
intron-intron	ENST00000395845	ENST00000472022		ChiTaRS3.1			AW976082	CENPO	chr2	25022093	-	KLF12	chr13	74321196	+
5CDS-intron	ENST00000229239	ENST00000440909		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000448921		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000437397		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000229239	ENST00000355814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000393087		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000393088		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000404814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000449399		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000229239	ENST00000402629		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000229239	ENST00000555289		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396856	ENST00000440909		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000448921		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000437397		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396856	ENST00000355814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000393087		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000393088		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000404814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000449399		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396856	ENST00000402629		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396856	ENST00000555289		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396861	ENST00000440909		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000448921		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000437397		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396861	ENST00000355814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000393087		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000393088		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000404814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000449399		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396861	ENST00000402629		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396861	ENST00000555289		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396859	ENST00000440909		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000448921		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000437397		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396859	ENST00000355814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000393087		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000393088		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000404814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000449399		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396859	ENST00000402629		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396859	ENST00000555289		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396858	ENST00000440909		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000448921		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000437397		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396858	ENST00000355814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000393087		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000393088		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000404814		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000449399		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-intron	ENST00000396858	ENST00000402629		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
5CDS-5UTR	ENST00000396858	ENST00000555289		ChiTaRS3.1			CB147232	GAPDH	chr12	6646881	-	SERPINA1	chr14	94854945	-
intron-5UTR	ENST00000358746	ENST00000518164		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000358746	ENST00000521291		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000358746	ENST00000396070		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000358746	ENST00000287038		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-intron	ENST00000358746	ENST00000523172		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000515176	ENST00000518164		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000515176	ENST00000521291		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000515176	ENST00000396070		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-5UTR	ENST00000515176	ENST00000287038		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-intron	ENST00000515176	ENST00000523172		ChiTaRS3.1			BG180512	TTC37	chr5	94861108	-	RPL30	chr8	99057248	-
intron-3UTR	ENST00000307790	ENST00000373060		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000307790	ENST00000373063		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000307790	ENST00000409208		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000307790	ENST00000373057		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000307790	ENST00000307972		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000397771	ENST00000373060		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000397771	ENST00000373063		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000397771	ENST00000409208		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000397771	ENST00000373057		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000397771	ENST00000307972		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000542393	ENST00000373060		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000542393	ENST00000373063		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000542393	ENST00000409208		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000542393	ENST00000373057		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000542393	ENST00000307972		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000478812	ENST00000373060		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000478812	ENST00000373063		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000478812	ENST00000409208		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000478812	ENST00000373057		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-intron	ENST00000478812	ENST00000307972		ChiTaRS3.1			AK126172	ASCC2	chr22	30232680	-	FOXP4	chr6	41569325	+
intron-3UTR	ENST00000289371	ENST00000219299		ChiTaRS3.1			CB243572	EIF5B	chr2	99984951	-	CCDC113	chr16	58317310	+
intron-3UTR	ENST00000289371	ENST00000443128		ChiTaRS3.1			CB243572	EIF5B	chr2	99984951	-	CCDC113	chr16	58317310	+
intron-intron	ENST00000289371	ENST00000566498		ChiTaRS3.1			CB243572	EIF5B	chr2	99984951	-	CCDC113	chr16	58317310	+
intron-intron	ENST00000382303	ENST00000590829		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000591223		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000414659		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000432735		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000444998		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000455567		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000421927		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382303	ENST00000588753		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-3UTR	ENST00000382303	ENST00000420074		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000590829		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000591223		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000414659		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000432735		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000444998		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000455567		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000421927		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000489369	ENST00000588753		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-3UTR	ENST00000489369	ENST00000420074		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000590829		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000591223		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000414659		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000432735		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000444998		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000455567		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000421927		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382297	ENST00000588753		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-3UTR	ENST00000382297	ENST00000420074		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000590829		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000591223		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000414659		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000432735		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000444998		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000455567		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000421927		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-intron	ENST00000382293	ENST00000588753		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
intron-3UTR	ENST00000382293	ENST00000420074		ChiTaRS3.1			AW361372	KANK1	chr9	547438	+	MCM3AP-AS1	chr21	47655068	+
3UTR-3CDS	ENST00000366577	ENST00000535016		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000366577	ENST00000265872		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000366577	ENST00000543719		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-intron	ENST00000366577	ENST00000483264		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000535016		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000265872		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000543719		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-intron	ENST00000418145	ENST00000483264		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000535016		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000265872		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000543719		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-intron	ENST00000535889	ENST00000483264		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000535016		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000265872		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000543719		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-intron	ENST00000470570	ENST00000483264		ChiTaRS3.1			AW841012	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000357325	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000357325	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000357325	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000357325	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-3CDS	ENST00000537739	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000537739	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000537739	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000537739	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-3CDS	ENST00000368209	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368209	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368209	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368209	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-3CDS	ENST00000465180	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000465180	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000465180	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000465180	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-3CDS	ENST00000416666	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000416666	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000416666	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000416666	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-3CDS	ENST00000368206	ENST00000263578		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368206	ENST00000534011		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368206	ENST00000442061		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
intron-intron	ENST00000368206	ENST00000532125		ChiTaRS3.1			BF808622	HDGF	chr1	156713569	+	FOXRED1	chr11	126141514	+
In-frame	ENST00000380320	ENST00000380320		ChiTaRS3.1			CN350362	EMILIN1	chr2	27306667	+	EMILIN1	chr2	27305981	+
intron-intron	ENST00000366592	ENST00000276282		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-intron	ENST00000366592	ENST00000520091		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-intron	ENST00000366591	ENST00000276282		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-intron	ENST00000366591	ENST00000520091		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-intron	ENST00000477559	ENST00000276282		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-intron	ENST00000477559	ENST00000520091		ChiTaRS3.1			AL832142	GPR137B	chr1	236369151	-	MFHAS1	chr8	8733111	-
intron-5UTR	ENST00000586702	ENST00000586702		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000586702	ENST00000294618		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000586702	ENST00000319867		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000294618	ENST00000586702		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000294618	ENST00000294618		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000294618	ENST00000319867		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000319867	ENST00000586702		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000319867	ENST00000294618		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000319867	ENST00000319867		ChiTaRS3.1			BU676692	DOCK6	chr19	11311138	+	DOCK6	chr19	11311436	-
intron-5UTR	ENST00000392514	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000392514	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000392514	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000392514	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000392514	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000551150	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000551150	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000551150	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000551150	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000551150	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000552292	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000552292	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000552292	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000552292	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000552292	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000313104	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000313104	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000313104	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000313104	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000313104	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000546989	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000546989	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000546989	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000546989	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000546989	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000228306	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000228306	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000228306	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000228306	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000228306	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000550296	ENST00000507754		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000550296	ENST00000252576		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000550296	ENST00000503283		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000550296	ENST00000512771		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
intron-5UTR	ENST00000550296	ENST00000428459		ChiTaRS3.1			AF155662	RPLP0	chr12	120635169	+	NDUFA13	chr19	19627042	+
5CDS-3UTR	ENST00000429709	ENST00000429709		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000429709	ENST00000450518		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000429709	ENST00000392662		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-intron	ENST00000429709	ENST00000467615		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000450518	ENST00000429709		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000450518	ENST00000450518		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000450518	ENST00000392662		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-intron	ENST00000450518	ENST00000467615		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000392662	ENST00000429709		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000392662	ENST00000450518		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-3UTR	ENST00000392662	ENST00000392662		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
5CDS-intron	ENST00000392662	ENST00000467615		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
3UTR-3UTR	ENST00000467615	ENST00000429709		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
3UTR-3UTR	ENST00000467615	ENST00000450518		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
3UTR-3UTR	ENST00000467615	ENST00000392662		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
3UTR-intron	ENST00000467615	ENST00000467615		ChiTaRS3.1			BE708502	ACTL6A	chr3	179298435	-	ACTL6A	chr3	179305863	+
3UTR-3UTR	ENST00000360943	ENST00000360943		ChiTaRS3.1			BU194752	UBE2Z	chr17	47005755	-	UBE2Z	chr17	47005871	+
intron-intron	ENST00000309311	ENST00000356805		ChiTaRS3.1			CV392722	EEF2	chr19	3980943	+	SPTBN1	chr2	54687249	-
intron-intron	ENST00000309311	ENST00000333896		ChiTaRS3.1			CV392722	EEF2	chr19	3980943	+	SPTBN1	chr2	54687249	-
intron-intron	ENST00000600720	ENST00000356805		ChiTaRS3.1			CV392722	EEF2	chr19	3980943	+	SPTBN1	chr2	54687249	-
intron-intron	ENST00000600720	ENST00000333896		ChiTaRS3.1			CV392722	EEF2	chr19	3980943	+	SPTBN1	chr2	54687249	-
intron-intron	ENST00000260665	ENST00000260665		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000260665	ENST00000409946		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000260665	ENST00000409659		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409946	ENST00000260665		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409946	ENST00000409946		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409946	ENST00000409659		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409659	ENST00000260665		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409659	ENST00000409946		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
intron-intron	ENST00000409659	ENST00000409659		ChiTaRS3.1			CR743262	LRPPRC	chr2	44128368	+	LRPPRC	chr2	44123774	+
5CDS-3UTR	ENST00000309422	ENST00000309422		ChiTaRS3.1			BG959452	VEGFB	chr11	64006259	+	VEGFB	chr11	64006165	-
5CDS-3UTR	ENST00000309422	ENST00000426086		ChiTaRS3.1			BG959452	VEGFB	chr11	64006259	+	VEGFB	chr11	64006165	-
intron-3UTR	ENST00000426086	ENST00000309422		ChiTaRS3.1			BG959452	VEGFB	chr11	64006259	+	VEGFB	chr11	64006165	-
intron-3UTR	ENST00000426086	ENST00000426086		ChiTaRS3.1			BG959452	VEGFB	chr11	64006259	+	VEGFB	chr11	64006165	-
intron-3CDS	ENST00000432884	ENST00000395170		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000432884	ENST00000547306		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000432884	ENST00000316299		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000432884	ENST00000548065		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000432884	ENST00000552212		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000262942	ENST00000395170		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000262942	ENST00000547306		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000262942	ENST00000316299		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000262942	ENST00000548065		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000262942	ENST00000552212		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000471960	ENST00000395170		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000471960	ENST00000547306		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000471960	ENST00000316299		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000471960	ENST00000548065		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-3CDS	ENST00000471960	ENST00000552212		ChiTaRS3.1			BM477142	ARPC1A	chr7	98972236	+	PRKAG1	chr12	49398934	-
intron-intron	ENST00000261776	ENST00000261776		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000261776	ENST00000571759		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000261776	ENST00000536184		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000571759	ENST00000261776		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000571759	ENST00000571759		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000571759	ENST00000536184		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000536184	ENST00000261776		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000536184	ENST00000571759		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-intron	ENST00000536184	ENST00000536184		ChiTaRS3.1			CV310892	VAC14	chr16	70826837	-	VAC14	chr16	70827759	-
intron-3CDS	ENST00000370192	ENST00000258424		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3UTR	ENST00000370192	ENST00000464949		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3CDS	ENST00000474241	ENST00000258424		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3UTR	ENST00000474241	ENST00000464949		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3CDS	ENST00000423006	ENST00000258424		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3UTR	ENST00000423006	ENST00000464949		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3CDS	ENST00000306031	ENST00000258424		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-3UTR	ENST00000306031	ENST00000464949		ChiTaRS3.1			BP319012	DPYD	chr1	98320818	-	COX5B	chr2	98264565	+
intron-intron	ENST00000360416	ENST00000536122		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000268699		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000540721		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000536122		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000268699		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000540721		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000536122		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000268699		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000540721		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000536122		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000268699		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000540721		ChiTaRS3.1			CV360532	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
3UTR-3CDS	ENST00000469172	ENST00000381346		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
3UTR-3CDS	ENST00000469172	ENST00000553384		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
3UTR-3CDS	ENST00000469172	ENST00000428130		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000265866	ENST00000381346		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000265866	ENST00000553384		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000265866	ENST00000428130		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
Frame-shit	ENST00000441000	ENST00000381346		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
Frame-shit	ENST00000441000	ENST00000553384		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
Frame-shit	ENST00000441000	ENST00000428130		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000354695	ENST00000381346		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000354695	ENST00000553384		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
In-frame	ENST00000354695	ENST00000428130		ChiTaRS3.1			AI160852	HNRNPH3	chr10	70101762	-	RDH11	chr14	68145082	+
intron-intron	ENST00000263707	ENST00000316694		ChiTaRS3.1			BF356132	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000352886		ChiTaRS3.1			BF356132	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000539052		ChiTaRS3.1			BF356132	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
intron-intron	ENST00000263707	ENST00000354098		ChiTaRS3.1			BF356132	TFCP2L1	chr2	122041739	+	SHMT1	chr17	18238457	-
In-frame	ENST00000373247	ENST00000373247		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373247	ENST00000373245		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373247	ENST00000393706		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373247	ENST00000460181		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373247	ENST00000373225		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373245	ENST00000373247		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373245	ENST00000373245		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373245	ENST00000393706		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373245	ENST00000460181		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373245	ENST00000373225		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000393706	ENST00000373247		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000393706	ENST00000373245		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000393706	ENST00000393706		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000393706	ENST00000460181		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000393706	ENST00000373225		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
3UTR-3CDS	ENST00000460181	ENST00000373247		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
3UTR-3CDS	ENST00000460181	ENST00000373245		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
3UTR-3CDS	ENST00000460181	ENST00000393706		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
3UTR-3UTR	ENST00000460181	ENST00000460181		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
3UTR-3UTR	ENST00000460181	ENST00000373225		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373225	ENST00000373247		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373225	ENST00000373245		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
In-frame	ENST00000373225	ENST00000393706		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373225	ENST00000460181		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
5CDS-3UTR	ENST00000373225	ENST00000373225		ChiTaRS3.1			BF772512	FPGS	chr9	130570585	+	FPGS	chr9	130566642	+
intron-3UTR	ENST00000477916	ENST00000534336		ChiTaRS3.1			CA446412	MDS2	chr1	23918977	+	MALAT1	chr11	65267263	-
intron-3UTR	ENST00000374555	ENST00000534336		ChiTaRS3.1			CA446412	MDS2	chr1	23918977	+	MALAT1	chr11	65267263	-
intron-intron	ENST00000455140	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000455140	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000248070	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000248070	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000535753	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000535753	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000594975	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000594975	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000602009	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000602009	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000597937	ENST00000329957		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000597937	ENST00000526462		ChiTaRS3.1			BI042612	EPS15L1	chr19	16485209	-	MOB2	chr11	1774551	+
intron-intron	ENST00000277141	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000277141	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375961	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375960	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375957	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375963	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000469004	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375948	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000277141		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375961		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375960		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375957		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375963		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000469004		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375948		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-intron	ENST00000375947	ENST00000375947		ChiTaRS3.1			BE080712	ZCCHC6	chr9	88961395	+	ZCCHC6	chr9	88957990	+
intron-3CDS	ENST00000589328	ENST00000355431		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000348476		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000395168		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000589328	ENST00000431317		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000589328	ENST00000553355		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000355431		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000348476		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000395168		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000409746	ENST00000431317		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000409746	ENST00000553355		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000355431		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000348476		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000395168		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-3CDS	ENST00000588801	ENST00000431317		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
intron-intron	ENST00000588801	ENST00000553355		ChiTaRS3.1			BI024692	PSTPIP2	chr18	43571883	-	ARID4A	chr14	58833654	+
3UTR-intron	ENST00000534336	ENST00000263960		ChiTaRS3.1			BG980412	MALAT1	chr11	65272321	-	COQ10B	chr2	198332770	+
3UTR-intron	ENST00000534336	ENST00000409398		ChiTaRS3.1			BG980412	MALAT1	chr11	65272321	-	COQ10B	chr2	198332770	+
3UTR-intron	ENST00000534336	ENST00000488445		ChiTaRS3.1			BG980412	MALAT1	chr11	65272321	-	COQ10B	chr2	198332770	+
3UTR-intron	ENST00000534336	ENST00000545340		ChiTaRS3.1			BG980412	MALAT1	chr11	65272321	-	COQ10B	chr2	198332770	+
3UTR-intron	ENST00000534336	ENST00000409010		ChiTaRS3.1			BG980412	MALAT1	chr11	65272321	-	COQ10B	chr2	198332770	+
intron-3UTR	ENST00000541773	ENST00000316059		ChiTaRS3.1			BQ301232	NID2	chr14	52472159	+	ZFP91	chr11	58387416	+
intron-3UTR	ENST00000216286	ENST00000316059		ChiTaRS3.1			BQ301232	NID2	chr14	52472159	+	ZFP91	chr11	58387416	+
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			BU783352	MEG3	chr14	101302125	-	MEG3	chr14	101302553	+
intron-intron	ENST00000222330	ENST00000504376		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000222330	ENST00000382254		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000222330	ENST00000522262		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000222330	ENST00000521384		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000398249	ENST00000504376		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000398249	ENST00000382254		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000398249	ENST00000522262		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000398249	ENST00000521384		ChiTaRS3.1			CB956912	GSK3A	chr19	42743135	-	CDH12	chr5	21978541	+
intron-intron	ENST00000464611	ENST00000336665		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000464611	ENST00000304032		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000464611	ENST00000409538		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000464611	ENST00000428334		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000464611	ENST00000409457		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000331789	ENST00000336665		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000331789	ENST00000304032		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000331789	ENST00000409538		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000331789	ENST00000428334		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-intron	ENST00000331789	ENST00000409457		ChiTaRS3.1			BE707882	ACTB	chr7	5568826	-	AGAP1	chr2	237015903	+
intron-3UTR	ENST00000354532	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000354532	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000599846	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000599846	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000596957	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000596957	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000347545	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000347545	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000378152	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000378152	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000337665	ENST00000361574		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-3UTR	ENST00000337665	ENST00000587975		ChiTaRS3.1			BF962512	ARHGEF1	chr19	42411138	+	R3HDM4	chr19	896890	-
intron-intron	ENST00000370982	ENST00000370982		ChiTaRS3.1			AW851172	GNG12	chr1	68192661	+	GNG12	chr1	68192013	+
intron-intron	ENST00000370982	ENST00000494936		ChiTaRS3.1			AW851172	GNG12	chr1	68192661	+	GNG12	chr1	68192013	+
intron-intron	ENST00000494936	ENST00000370982		ChiTaRS3.1			AW851172	GNG12	chr1	68192661	+	GNG12	chr1	68192013	+
intron-intron	ENST00000494936	ENST00000494936		ChiTaRS3.1			AW851172	GNG12	chr1	68192661	+	GNG12	chr1	68192013	+
Frame-shit	ENST00000287497	ENST00000287497		ChiTaRS3.1			BE144062	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000287497	ENST00000544665		ChiTaRS3.1			BE144062	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000544665	ENST00000287497		ChiTaRS3.1			BE144062	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
Frame-shit	ENST00000544665	ENST00000544665		ChiTaRS3.1			BE144062	ITGAM	chr16	31336014	-	ITGAM	chr16	31284757	+
3UTR-intron	ENST00000425331	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000425331	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000541300	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000428183	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000441711	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000454559	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000355957		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000361770		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000359617		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000371141		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000371132		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000496003		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000358029		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
3UTR-intron	ENST00000323716	ENST00000361830		ChiTaRS3.1			AI339072	ARMC10	chr7	102740023	-	STX16	chr20	57241480	-
intron-intron	ENST00000373184	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373184	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373187	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000356100	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373190	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373193	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373198	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000373201	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373184		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373187		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000356100		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373190		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373193		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373198		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000373201		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-intron	ENST00000485499	ENST00000485499		ChiTaRS3.1			BF924242	PTPRT	chr20	41746237	-	PTPRT	chr20	41746706	-
intron-3CDS	ENST00000314797	ENST00000546373		ChiTaRS3.1			AW889772	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-3CDS	ENST00000314797	ENST00000551568		ChiTaRS3.1			AW889772	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-3CDS	ENST00000314797	ENST00000338356		ChiTaRS3.1			AW889772	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-intron	ENST00000314797	ENST00000549691		ChiTaRS3.1			AW889772	COPG1	chr3	128996137	-	CPM	chr12	69265665	-
intron-intron	ENST00000314641	ENST00000297293		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000314641	ENST00000493372		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000336775	ENST00000297293		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000336775	ENST00000493372		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000446408	ENST00000297293		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000446408	ENST00000493372		ChiTaRS3.1			AF124512	BVES	chr6	105548452	-	LMTK2	chr7	97819031	+
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082282	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-3UTR	ENST00000263579	ENST00000313164		ChiTaRS3.1			AV705612	DCPS	chr11	126208533	+	C7	chr5	40982513	+
intron-intron	ENST00000263579	ENST00000494960		ChiTaRS3.1			AV705612	DCPS	chr11	126208533	+	C7	chr5	40982513	+
intron-3UTR	ENST00000530860	ENST00000313164		ChiTaRS3.1			AV705612	DCPS	chr11	126208533	+	C7	chr5	40982513	+
intron-intron	ENST00000530860	ENST00000494960		ChiTaRS3.1			AV705612	DCPS	chr11	126208533	+	C7	chr5	40982513	+
intron-intron	ENST00000370460	ENST00000370460		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370460	ENST00000370457		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370460	ENST00000342251		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370460	ENST00000370458		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370460	ENST00000286437		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370457	ENST00000370460		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370457	ENST00000370457		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370457	ENST00000342251		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370457	ENST00000370458		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370457	ENST00000286437		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000342251	ENST00000370460		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000342251	ENST00000370457		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000342251	ENST00000342251		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000342251	ENST00000370458		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000342251	ENST00000286437		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370458	ENST00000370460		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370458	ENST00000370457		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370458	ENST00000342251		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370458	ENST00000370458		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000370458	ENST00000286437		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000286437	ENST00000370460		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000286437	ENST00000370457		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000286437	ENST00000342251		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000286437	ENST00000370458		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-intron	ENST00000286437	ENST00000286437		ChiTaRS3.1			BF999372	AFF2	chrX	147743429	-	AFF2	chrX	147744289	-
intron-3CDS	ENST00000421182	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000421182	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000421182	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357867	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000357867	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000323926	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000323926	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000336916	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000336916	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000354785	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000354785	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000357009	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000357009	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000346544	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000346544	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000345488	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000345488	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000359671	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000359671	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000446046	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000446046	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000443816	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000443816	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000432072	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000432072	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000356005	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000356005	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000490833	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000490833	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000534797		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000397614		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000397615		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000397604		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000533410		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000438658		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000354420		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-3CDS	ENST00000426059	ENST00000356187		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000426059	ENST00000533592		ChiTaRS3.1			BF029962	FN1	chr2	216251437	-	RNH1	chr11	494775	-
intron-intron	ENST00000219638	ENST00000338086		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000219638	ENST00000319801		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000219638	ENST00000361078		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000219638	ENST00000536417		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000219638	ENST00000403432		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000219638	ENST00000420234		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000338086		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000319801		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000361078		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000536417		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000403432		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000395878	ENST00000420234		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000338086		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000319801		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000361078		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000536417		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000403432		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567212	ENST00000420234		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000338086		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000319801		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000361078		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000536417		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000403432		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000567264	ENST00000420234		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000338086		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000319801		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000361078		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000536417		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000403432		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000571064	ENST00000420234		ChiTaRS3.1			BF356582	UBFD1	chr16	23571089	-	PUM2	chr2	20489142	+
intron-intron	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425248	ABL1	chr9	133715193	+	BCR	chr22	23632419	+
intron-intron	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425248	ABL1	chr9	133715193	+	BCR	chr22	23632419	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425248	ABL1	chr9	133715193	+	BCR	chr22	23632419	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425248	ABL1	chr9	133715193	+	BCR	chr22	23632419	+
intron-intron	ENST00000378308	ENST00000378308		ChiTaRS3.1			BF094012	USP9X	chrX	41058695	+	USP9X	chrX	41058406	+
intron-intron	ENST00000378308	ENST00000324545		ChiTaRS3.1			BF094012	USP9X	chrX	41058695	+	USP9X	chrX	41058406	+
intron-intron	ENST00000324545	ENST00000378308		ChiTaRS3.1			BF094012	USP9X	chrX	41058695	+	USP9X	chrX	41058406	+
intron-intron	ENST00000324545	ENST00000324545		ChiTaRS3.1			BF094012	USP9X	chrX	41058695	+	USP9X	chrX	41058406	+
intron-intron	ENST00000425690	ENST00000425690		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000425690	ENST00000344956		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000425690	ENST00000403059		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000425690	ENST00000406449		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000344956	ENST00000425690		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000344956	ENST00000344956		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000344956	ENST00000403059		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000344956	ENST00000406449		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000403059	ENST00000425690		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000403059	ENST00000344956		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000403059	ENST00000403059		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000403059	ENST00000406449		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000406449	ENST00000425690		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000406449	ENST00000344956		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000406449	ENST00000403059		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-intron	ENST00000406449	ENST00000406449		ChiTaRS3.1			BF223642	PVR	chr19	45169188	-	PVR	chr19	45168930	+
intron-3UTR	ENST00000371080	ENST00000254976		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000371080	ENST00000304886		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000371080	ENST00000495883		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000371079	ENST00000254976		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000371079	ENST00000304886		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000371079	ENST00000495883		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000482426	ENST00000254976		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000482426	ENST00000304886		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000482426	ENST00000495883		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000545203	ENST00000254976		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000545203	ENST00000304886		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-3UTR	ENST00000545203	ENST00000495883		ChiTaRS3.1			AW899942	ROR1	chr1	64286029	+	SNAP25	chr20	10287852	-
intron-intron	ENST00000340630	ENST00000467482		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000340630	ENST00000380929		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000340630	ENST00000487206		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000453009	ENST00000467482		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000453009	ENST00000380929		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000453009	ENST00000487206		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000433985	ENST00000467482		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000433985	ENST00000380929		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000433985	ENST00000487206		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000476548	ENST00000467482		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000476548	ENST00000380929		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
intron-intron	ENST00000476548	ENST00000487206		ChiTaRS3.1			BI003462	IFT27	chr22	37154256	-	GPR143	chrX	9715041	+
5UTR-intron	ENST00000444303	ENST00000376377		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000259874		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000416336		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000439190		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000429592		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000416884		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000400509		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000383560		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000436988		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-intron	ENST00000444303	ENST00000450236		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-3UTR	ENST00000444303	ENST00000446599		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
5UTR-3UTR	ENST00000444303	ENST00000435856		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000376377		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000259874		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000416336		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000439190		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000429592		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000416884		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000400509		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000383560		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000436988		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000396554	ENST00000450236		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-3UTR	ENST00000396554	ENST00000446599		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-3UTR	ENST00000396554	ENST00000435856		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000376377		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000259874		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000416336		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000439190		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000429592		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000416884		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000400509		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000383560		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000436988		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000530864	ENST00000450236		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-3UTR	ENST00000530864	ENST00000446599		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-3UTR	ENST00000530864	ENST00000435856		ChiTaRS3.1			CD109332	AMPD3	chr11	10472060	+	IER3	chr6	2043564	-
intron-intron	ENST00000489714	ENST00000280333		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000489714	ENST00000484400		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000536175	ENST00000280333		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000536175	ENST00000484400		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000243344	ENST00000280333		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000243344	ENST00000484400		ChiTaRS3.1			AI811442	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-3CDS	ENST00000544865	ENST00000430479		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000399357		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000420159		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000343495		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000242066		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000405192		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000405358		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000403527		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000405218		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000544865	ENST00000403685		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-5UTR	ENST00000544865	ENST00000476720		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000430479		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000399357		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000420159		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000343495		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000242066		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000405192		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000405358		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000403527		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000405218		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000263073	ENST00000403685		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-5UTR	ENST00000263073	ENST00000476720		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000430479		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000399357		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000420159		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000343495		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000242066		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000405192		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000405358		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000403527		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000405218		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000354901	ENST00000403685		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-5UTR	ENST00000354901	ENST00000476720		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000430479		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000399357		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000420159		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000343495		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000242066		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000405192		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000405358		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000403527		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000405218		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000536871	ENST00000403685		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-5UTR	ENST00000536871	ENST00000476720		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000430479		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000399357		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000420159		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000343495		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000242066		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000405192		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000405358		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000403527		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000405218		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-3CDS	ENST00000573166	ENST00000403685		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
intron-5UTR	ENST00000573166	ENST00000476720		ChiTaRS3.1			EU693077	SMG6	chr17	7960466	+	ETV1	chr7	13978872	-
5CDS-intron	ENST00000311117	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000311117	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000311117	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000311117	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000311117	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-3UTR	ENST00000311117	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000334914	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000334914	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000334914	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000334914	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000334914	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-3UTR	ENST00000334914	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000257745	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000257745	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000257745	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000257745	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000257745	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-3UTR	ENST00000257745	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000334877	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000334877	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000334877	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000334877	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-intron	ENST00000334877	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
5CDS-3UTR	ENST00000334877	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000476671	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000476671	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000476671	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000476671	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000476671	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-3UTR	ENST00000476671	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000480368	ENST00000311117		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000480368	ENST00000334914		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000480368	ENST00000257745		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000480368	ENST00000334877		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-intron	ENST00000480368	ENST00000476671		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-3UTR	ENST00000480368	ENST00000480368		ChiTaRS3.1			AW592402	KMT2E	chr7	104753631	+	KMT2E	chr7	104678920	+
intron-3UTR	ENST00000401558	ENST00000401558		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000401558	ENST00000404992		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000401558	ENST00000406957		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000401558	ENST00000481214		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-3UTR	ENST00000404992	ENST00000401558		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000404992	ENST00000404992		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000404992	ENST00000406957		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000404992	ENST00000481214		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-3UTR	ENST00000406957	ENST00000401558		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000406957	ENST00000404992		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000406957	ENST00000406957		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000406957	ENST00000481214		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-3UTR	ENST00000481214	ENST00000401558		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000481214	ENST00000404992		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000481214	ENST00000406957		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
intron-intron	ENST00000481214	ENST00000481214		ChiTaRS3.1			BM462202	XPO1	chr2	61705298	+	XPO1	chr2	61705189	-
Frame-shit	ENST00000264819	ENST00000331738		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
Frame-shit	ENST00000264819	ENST00000354654		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
5CDS-5UTR	ENST00000264819	ENST00000392442		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
5UTR-3CDS	ENST00000592722	ENST00000331738		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
5UTR-3CDS	ENST00000592722	ENST00000354654		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
5UTR-5UTR	ENST00000592722	ENST00000392442		ChiTaRS3.1			HM245396	MIER2	chr19	334400	-	RSRC2	chr12	122990255	-
intron-intron	ENST00000302787	ENST00000543086		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000546231		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000397203		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000360905		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000589028		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000355446		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000302787	ENST00000536573		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000543086		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000546231		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000397203		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000360905		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000589028		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000355446		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
intron-intron	ENST00000512189	ENST00000536573		ChiTaRS3.1			BQ319942	LETM1	chr4	1817444	+	ERC1	chr12	1589555	+
5CDS-intron	ENST00000354179	ENST00000508802		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000261439		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000402522		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000407365		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000508802		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000261439		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000402522		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000407365		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000508802		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000261439		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000402522		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000407365		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000508802		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000261439		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000402522		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000407365		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000508802		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000261439		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000402522		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000407365		ChiTaRS3.1			BF369612	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
3UTR-3UTR	ENST00000322611	ENST00000322611		ChiTaRS3.1			BU679952	BASP1	chr5	17276426	-	BASP1	chr5	17276224	+
intron-intron	ENST00000452400	ENST00000452400		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000452400	ENST00000267974		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000452400	ENST00000524223		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000452400		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000267974		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000524223		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000452400		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000267974		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000524223		ChiTaRS3.1			AA829002	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000354570	ENST00000354570		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000354570	ENST00000454590		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000354570	ENST00000544465		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000354570	ENST00000438100		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000354570	ENST00000432797		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000454590	ENST00000354570		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000454590	ENST00000454590		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000454590	ENST00000544465		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000454590	ENST00000438100		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000454590	ENST00000432797		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000544465	ENST00000354570		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000544465	ENST00000454590		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000544465	ENST00000544465		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000544465	ENST00000438100		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000544465	ENST00000432797		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000438100	ENST00000354570		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000438100	ENST00000454590		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000438100	ENST00000544465		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000438100	ENST00000438100		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000438100	ENST00000432797		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000432797	ENST00000354570		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000432797	ENST00000454590		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000432797	ENST00000544465		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000432797	ENST00000438100		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000432797	ENST00000432797		ChiTaRS3.1			BM721392	MAP7	chr6	136718116	+	MAP7	chr6	136717782	-
intron-intron	ENST00000372458	ENST00000372458		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000372458	ENST00000413844		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000372458	ENST00000470769		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000413844	ENST00000372458		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000413844	ENST00000413844		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000413844	ENST00000470769		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000470769	ENST00000372458		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000470769	ENST00000413844		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
intron-intron	ENST00000470769	ENST00000470769		ChiTaRS3.1			DA570042	ELOVL1	chr1	43829445	-	ELOVL1	chr1	43832405	-
Frame-shit	ENST00000522793	ENST00000522793		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
Frame-shit	ENST00000522793	ENST00000231238		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
5CDS-intron	ENST00000522793	ENST00000520274		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
Frame-shit	ENST00000231238	ENST00000522793		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
Frame-shit	ENST00000231238	ENST00000231238		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
5CDS-intron	ENST00000231238	ENST00000520274		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
3UTR-3CDS	ENST00000520274	ENST00000522793		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
3UTR-3CDS	ENST00000520274	ENST00000231238		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
3UTR-intron	ENST00000520274	ENST00000520274		ChiTaRS3.1			BU676132	TTC1	chr5	159476577	+	TTC1	chr5	159437792	+
intron-intron	ENST00000542515	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542515	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000279147	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000536870	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000535657	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000539414	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000358621		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000357447		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000378503		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000342409		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000493380		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000475141		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000542341	ENST00000492155		ChiTaRS3.1			AI309122	ORAOV1	chr11	69480522	+	FRMD4A	chr10	14141324	+
intron-intron	ENST00000367142	ENST00000535572		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000537687		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000315939		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000447667		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000530271		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000540360		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000340908		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000574564		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000535572		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000537687		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000315939		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000447667		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000530271		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000540360		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000340908		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000574564		ChiTaRS3.1			AI917772	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-3CDS	ENST00000397338	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000397338	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000397338	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000282512	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000282512	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000282512	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000381937	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000381937	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000381937	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000511613	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000511613	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000511613	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000506945	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000506945	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000506945	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000514504	ENST00000321773		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000514504	ENST00000409012		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-intron	ENST00000514504	ENST00000541945		ChiTaRS3.1			BF746922	NADK2	chr5	36238054	-	TPRN	chr9	140093594	+
intron-3CDS	ENST00000403829	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000403829	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000403829	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298687	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000298687	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000350792	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000350792	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397858	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397858	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554104	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000554104	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000555158	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000555158	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000553503	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000553503	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397853	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397853	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000360463	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000360463	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000556147	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000556147	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397856	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397856	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397855	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397855	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554143	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000554143	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397851	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397851	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397847	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397847	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000298684	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000298684	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000397844	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000397844	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000403829		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000298687		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000350792		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397858		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000554104		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000555158		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000553503		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397853		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000360463		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000556147		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397856		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397855		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000554143		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397851		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397847		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000298684		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000554277	ENST00000397844		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-5UTR	ENST00000554277	ENST00000554277		ChiTaRS3.1			BE185592	NDRG2	chr14	21490255	+	NDRG2	chr14	21488120	-
intron-3CDS	ENST00000427662	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000427662	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000369774	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000369774	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000355946	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000355946	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000315994	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000315994	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000540321	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000540321	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000538130	ENST00000288221		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000538130	ENST00000486496		ChiTaRS3.1			BC046212	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000373555	ENST00000559488		ChiTaRS3.1			BI059142	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000571680		ChiTaRS3.1			BI059142	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000435993		ChiTaRS3.1			BI059142	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000560629		ChiTaRS3.1			BI059142	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000298310	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000298310	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000382135	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000382135	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000545773	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000545773	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000556925	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000556925	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000546046	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000546046	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000556672	ENST00000375377		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
intron-intron	ENST00000556672	ENST00000464386		ChiTaRS3.1			BU564342	NEMF	chr14	50050296	-	KIAA1462	chr10	30358374	+
3UTR-3CDS	ENST00000294244	ENST00000294244		ChiTaRS3.1			BU754412	C11orf84	chr11	63595097	-	C11orf84	chr11	63585486	+
Frame-shit	ENST00000253193	ENST00000423312		ChiTaRS3.1			BF877192	LRP3	chr19	33693826	-	KIF26A	chr14	104642141	+
Frame-shit	ENST00000253193	ENST00000315264		ChiTaRS3.1			BF877192	LRP3	chr19	33693826	-	KIF26A	chr14	104642141	+
intron-3CDS	ENST00000389484	ENST00000302102		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000389484	ENST00000545399		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000389484	ENST00000543770		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000389484	ENST00000602133		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-intron	ENST00000389484	ENST00000468774		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000486364	ENST00000302102		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000486364	ENST00000545399		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000486364	ENST00000543770		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-3CDS	ENST00000486364	ENST00000602133		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
intron-intron	ENST00000486364	ENST00000468774		ChiTaRS3.1			BF961292	LRP1B	chr2	142370702	-	ATP1A3	chr19	42471857	+
5CDS-5UTR	ENST00000339374	ENST00000256104		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
5CDS-5UTR	ENST00000339374	ENST00000518669		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
intron-5UTR	ENST00000555177	ENST00000256104		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
intron-5UTR	ENST00000555177	ENST00000518669		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
5CDS-5UTR	ENST00000382985	ENST00000256104		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
5CDS-5UTR	ENST00000382985	ENST00000518669		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
5CDS-5UTR	ENST00000556670	ENST00000256104		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
5CDS-5UTR	ENST00000556670	ENST00000518669		ChiTaRS3.1			BG992392	METTL17	chr14	21464814	-	FABP4	chr8	82395468	-
3UTR-3CDS	ENST00000534336	ENST00000337755		ChiTaRS3.1			BE089562	MALAT1	chr11	65268150	-	MGAT4B	chr5	179225193	+
3UTR-3CDS	ENST00000534336	ENST00000292591		ChiTaRS3.1			BE089562	MALAT1	chr11	65268150	-	MGAT4B	chr5	179225193	+
3UTR-intron	ENST00000534336	ENST00000521305		ChiTaRS3.1			BE089562	MALAT1	chr11	65268150	-	MGAT4B	chr5	179225193	+
intron-intron	ENST00000337195	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000337195	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000531469	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000494626	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000411419	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000476817	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000309035	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000337195		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000531469		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000494626		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000411419		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000476817		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000309035		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000334808	ENST00000334808		ChiTaRS3.1			BF331402	CTBP2	chr10	126811438	+	CTBP2	chr10	126799559	+
intron-intron	ENST00000368073	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000368073		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000326837		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000368074		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			AA632582	DCAF8	chr1	160248913	-	DCAF8	chr1	160248772	+
Frame-shit	ENST00000212355	ENST00000375482		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000212355	ENST00000416701		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000468206		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000337352		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000212355	ENST00000538555		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000370399	ENST00000375482		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
Frame-shit	ENST00000370399	ENST00000416701		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000468206		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000337352		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000370399	ENST00000538555		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
In-frame	ENST00000525962	ENST00000375482		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
In-frame	ENST00000525962	ENST00000416701		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000468206		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000337352		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
5CDS-intron	ENST00000525962	ENST00000538555		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-3CDS	ENST00000468996	ENST00000375482		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-3CDS	ENST00000468996	ENST00000416701		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000468206		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000337352		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-intron	ENST00000468996	ENST00000538555		ChiTaRS3.1			BC032232	TGFBR3	chr1	92262844	-	FGD3	chr9	95765205	+
intron-5UTR	ENST00000436152	ENST00000382120		ChiTaRS3.1			BE220432	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000465801	ENST00000382120		ChiTaRS3.1			BE220432	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000336604	ENST00000382120		ChiTaRS3.1			BE220432	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000396840	ENST00000382120		ChiTaRS3.1			BE220432	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-5UTR	ENST00000356896	ENST00000382120		ChiTaRS3.1			BE220432	IFFO1	chr12	6649056	+	SOD3	chr4	24797195	+
intron-intron	ENST00000352903	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000352903	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000352903	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000352903	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000352903	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000352903	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000537232	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000561221	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000558083	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000559142	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000352903		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000537232		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000561221		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000558083		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000559142		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-intron	ENST00000560582	ENST00000560582		ChiTaRS3.1			BM969002	TEX9	chr15	56736789	+	TEX9	chr15	56735685	+
intron-3UTR	ENST00000352131	ENST00000381298		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-3UTR	ENST00000352131	ENST00000336909		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-3UTR	ENST00000352131	ENST00000381287		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000502326		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000381294		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000536319		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000381293		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000381286		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000522633		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000396816		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000352131	ENST00000577363		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-3UTR	ENST00000055077	ENST00000381298		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-3UTR	ENST00000055077	ENST00000336909		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-3UTR	ENST00000055077	ENST00000381287		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000502326		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000381294		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000536319		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000381293		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000381286		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000522633		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000396816		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
intron-intron	ENST00000055077	ENST00000577363		ChiTaRS3.1			BQ673042	RFC2	chr7	73646509	+	IL6ST	chr5	55233425	-
Frame-shit	ENST00000361866	ENST00000357214		ChiTaRS3.1			BQ366332	COL6A1	chr21	47410319	+	SFPQ	chr1	35653678	-
5CDS-intron	ENST00000361866	ENST00000468598		ChiTaRS3.1			BQ366332	COL6A1	chr21	47410319	+	SFPQ	chr1	35653678	-
intron-3CDS	ENST00000498614	ENST00000357214		ChiTaRS3.1			BQ366332	COL6A1	chr21	47410319	+	SFPQ	chr1	35653678	-
intron-intron	ENST00000498614	ENST00000468598		ChiTaRS3.1			BQ366332	COL6A1	chr21	47410319	+	SFPQ	chr1	35653678	-
intron-intron	ENST00000441917	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000441917	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000541887	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000261819	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000535482	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000544314	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000344395	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000441917		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000541887		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000261819		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000535482		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000544314		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000344395		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000536366	ENST00000536366		ChiTaRS3.1			BE326352	ANAPC5	chr12	121770703	+	ANAPC5	chr12	121770059	+
intron-intron	ENST00000304385	ENST00000255559		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000304385	ENST00000542342		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000304385	ENST00000579988		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000304385	ENST00000579732		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000504064	ENST00000255559		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000504064	ENST00000542342		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000504064	ENST00000579988		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
intron-intron	ENST00000504064	ENST00000579732		ChiTaRS3.1			BI028092	TMEM154	chr4	153559676	+	SLC39A11	chr17	70831428	-
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000476522		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000367742		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000338920		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000476522		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000367742		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000338920		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000476522		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000367742		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000338920		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000476522		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000367742		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000338920		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000476522		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000367742		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000338920		ChiTaRS3.1			BE156212	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
intron-intron	ENST00000269701	ENST00000269701		ChiTaRS3.1			BG255732	AKAP8	chr19	15481022	-	AKAP8	chr19	15482763	-
intron-intron	ENST00000493952	ENST00000493952		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000493952	ENST00000338745		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000493952	ENST00000417717		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000493952	ENST00000454909		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000493952	ENST00000475083		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000338745	ENST00000493952		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000338745	ENST00000338745		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000338745	ENST00000417717		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000338745	ENST00000454909		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000338745	ENST00000475083		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
5CDS-intron	ENST00000417717	ENST00000493952		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
5CDS-3UTR	ENST00000417717	ENST00000338745		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
5CDS-3UTR	ENST00000417717	ENST00000417717		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
5CDS-intron	ENST00000417717	ENST00000454909		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
5CDS-intron	ENST00000417717	ENST00000475083		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000454909	ENST00000493952		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000454909	ENST00000338745		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000454909	ENST00000417717		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000454909	ENST00000454909		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000454909	ENST00000475083		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000475083	ENST00000493952		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000475083	ENST00000338745		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-3UTR	ENST00000475083	ENST00000417717		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000475083	ENST00000454909		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000475083	ENST00000475083		ChiTaRS3.1			AA639242	SATB1	chr3	18389431	-	SATB1	chr3	18389576	+
intron-intron	ENST00000257549	ENST00000341700		ChiTaRS3.1			AV645432	SDS	chr12	113830890	+	GNA14	chr9	80136692	-
intron-intron	ENST00000257549	ENST00000464095		ChiTaRS3.1			AV645432	SDS	chr12	113830890	+	GNA14	chr9	80136692	-
Frame-shit	ENST00000376170	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376170	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376170	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376170	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376170	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000359188	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000359188	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000359188	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000359188	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000359188	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376142	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376142	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376142	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376142	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376142	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376139	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376139	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376139	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376139	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376139	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376160	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376160	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376160	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376160	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376160	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376166	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376166	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376166	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376166	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376166	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376138	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376138	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376138	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376138	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376138	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000355394	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000355394	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000355394	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000355394	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000355394	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000490841	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000490841	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000490841	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000490841	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000490841	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376137	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376137	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376137	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376137	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376137	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000346832	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000346832	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000346832	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000346832	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000346832	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000536334	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000536334	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000536334	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000536334	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000536334	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376134	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376134	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376134	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376134	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376134	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376140	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376140	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
Frame-shit	ENST00000376140	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376140	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5CDS-intron	ENST00000376140	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5UTR-3CDS	ENST00000473481	ENST00000326799		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5UTR-3CDS	ENST00000473481	ENST00000376016		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5UTR-3CDS	ENST00000473481	ENST00000375972		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5UTR-intron	ENST00000473481	ENST00000463270		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
5UTR-intron	ENST00000473481	ENST00000477432		ChiTaRS3.1			DA016422	ABI1	chr10	27112067	-	YME1L1	chr10	27409478	-
intron-intron	ENST00000378954	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000378954	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000406122	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000402054	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000539122	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000332337	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000419554	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000452935	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000546051	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000378954		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000406122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000402054		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000539122		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000332337		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000419554		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000452935		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000546051		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-intron	ENST00000486927	ENST00000486927		ChiTaRS3.1			AA525182	ATL2	chr2	38549795	-	ATL2	chr2	38549702	+
intron-3CDS	ENST00000434457	ENST00000490531		ChiTaRS3.1			CB857412	DENND4C	chr9	19378466	+	NACAD	chr7	45125427	+
intron-3CDS	ENST00000602925	ENST00000490531		ChiTaRS3.1			CB857412	DENND4C	chr9	19378466	+	NACAD	chr7	45125427	+
intron-3CDS	ENST00000380432	ENST00000490531		ChiTaRS3.1			CB857412	DENND4C	chr9	19378466	+	NACAD	chr7	45125427	+
intron-3CDS	ENST00000351960	ENST00000351960		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000351960	ENST00000358965		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000351960	ENST00000393695		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-intron	ENST00000351960	ENST00000543450		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000358965	ENST00000351960		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000358965	ENST00000358965		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000358965	ENST00000393695		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-intron	ENST00000358965	ENST00000543450		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000393695	ENST00000351960		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000393695	ENST00000358965		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000393695	ENST00000393695		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-intron	ENST00000393695	ENST00000543450		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000543450	ENST00000351960		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000543450	ENST00000358965		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-3CDS	ENST00000543450	ENST00000393695		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-intron	ENST00000543450	ENST00000543450		ChiTaRS3.1			BF823462	NUMA1	chr11	71715300	+	NUMA1	chr11	71717181	-
intron-intron	ENST00000409592	ENST00000417237		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-3UTR	ENST00000409592	ENST00000342649		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000409592	ENST00000383746		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000409592	ENST00000396078		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000409592	ENST00000462612		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000258390	ENST00000417237		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-3UTR	ENST00000258390	ENST00000342649		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000258390	ENST00000383746		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000258390	ENST00000396078		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000258390	ENST00000462612		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000474102	ENST00000417237		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-3UTR	ENST00000474102	ENST00000342649		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000474102	ENST00000383746		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000474102	ENST00000396078		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000474102	ENST00000462612		ChiTaRS3.1			BE933702	DOCK10	chr2	225718137	+	TCAIM	chr3	44450057	+
intron-intron	ENST00000331925	ENST00000441740		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000331559		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000561096		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000561293		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000560253		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000558555		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000331925	ENST00000559524		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000441740		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000331559		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000561096		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000561293		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000560253		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000558555		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000573283	ENST00000559524		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000441740		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000331559		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000561096		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000561293		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000560253		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000558555		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575842	ENST00000559524		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000441740		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000331559		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000561096		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000561293		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000560253		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000558555		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000575087	ENST00000559524		ChiTaRS3.1			BI051072	ACTG1	chr17	79478944	-	MEIS3	chr19	47917536	-
intron-intron	ENST00000263277	ENST00000263277		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000263277	ENST00000538399		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000263277	ENST00000540884		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000538399	ENST00000263277		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000538399	ENST00000538399		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000538399	ENST00000540884		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000540884	ENST00000263277		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000540884	ENST00000538399		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-intron	ENST00000540884	ENST00000540884		ChiTaRS3.1			AW804242	EHD2	chr19	48231601	-	EHD2	chr19	48232830	+
intron-3CDS	ENST00000402038	ENST00000221166		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000402038	ENST00000518131		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000521540		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000437366		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000433454		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000221166		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000518131		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000521540		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000437366		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000433454		ChiTaRS3.1			AI810822	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000335508	ENST00000335508		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000335508	ENST00000462613		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000335508	ENST00000409915		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000335508	ENST00000414963		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000335508	ENST00000487698		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-3CDS	ENST00000462613	ENST00000335508		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000462613	ENST00000462613		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000462613	ENST00000409915		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000462613	ENST00000414963		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000462613	ENST00000487698		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-3CDS	ENST00000409915	ENST00000335508		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000409915	ENST00000462613		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000409915	ENST00000409915		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000409915	ENST00000414963		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000409915	ENST00000487698		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-3CDS	ENST00000414963	ENST00000335508		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000414963	ENST00000462613		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000414963	ENST00000409915		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000414963	ENST00000414963		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000414963	ENST00000487698		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-3CDS	ENST00000487698	ENST00000335508		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000487698	ENST00000462613		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000487698	ENST00000409915		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000487698	ENST00000414963		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
intron-intron	ENST00000487698	ENST00000487698		ChiTaRS3.1			BU674702	SF3B1	chr2	198256960	+	SF3B1	chr2	198257143	-
3UTR-3UTR	ENST00000340857	ENST00000340857		ChiTaRS3.1			BM998252	H1F0	chr22	38203076	-	H1F0	chr22	38203055	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766332	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766332	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000264036	ENST00000421182		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000357867		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000323926		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000336916		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000354785		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000357009		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000346544		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000345488		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000359671		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000446046		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000443816		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000432072		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000356005		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000490833		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000264036	ENST00000426059		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-3CDS	ENST00000392814	ENST00000421182		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000357867		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000323926		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000336916		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000354785		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000357009		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000346544		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000345488		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000359671		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000446046		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000443816		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000432072		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000356005		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000490833		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000392814	ENST00000426059		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-3CDS	ENST00000530144	ENST00000421182		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000357867		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000323926		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000336916		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000354785		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000357009		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000346544		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000345488		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000359671		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000446046		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000443816		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000432072		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000356005		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000490833		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000530144	ENST00000426059		ChiTaRS3.1			AA497002	MCAM	chr11	119179658	+	FN1	chr2	216236992	+
intron-intron	ENST00000500765	ENST00000500765		ChiTaRS3.1			AA665222	FAM13A-AS1	chr4	89647627	-	FAM13A-AS1	chr4	89647856	+
intron-intron	ENST00000500765	ENST00000511543		ChiTaRS3.1			AA665222	FAM13A-AS1	chr4	89647627	-	FAM13A-AS1	chr4	89647856	+
intron-intron	ENST00000511543	ENST00000500765		ChiTaRS3.1			AA665222	FAM13A-AS1	chr4	89647627	-	FAM13A-AS1	chr4	89647856	+
intron-intron	ENST00000511543	ENST00000511543		ChiTaRS3.1			AA665222	FAM13A-AS1	chr4	89647627	-	FAM13A-AS1	chr4	89647856	+
intron-intron	ENST00000261749	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000261749		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000561060		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559157		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558494		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559835		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559775		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558688		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558087		ChiTaRS3.1			AW291042	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-3UTR	ENST00000359543	ENST00000359543		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-5UTR	ENST00000359543	ENST00000566033		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-intron	ENST00000359543	ENST00000536829		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-3UTR	ENST00000566033	ENST00000359543		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-5UTR	ENST00000566033	ENST00000566033		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-intron	ENST00000566033	ENST00000536829		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-3UTR	ENST00000536829	ENST00000359543		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-5UTR	ENST00000536829	ENST00000566033		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-intron	ENST00000536829	ENST00000536829		ChiTaRS3.1			CA337292	EMP2	chr16	10626262	+	EMP2	chr16	10623169	-
intron-intron	ENST00000306627	ENST00000306627		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000306627	ENST00000346855		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000306627	ENST00000467766		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000306627	ENST00000424381		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000306627	ENST00000475680		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000346855	ENST00000306627		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000346855	ENST00000346855		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000346855	ENST00000467766		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000346855	ENST00000424381		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000346855	ENST00000475680		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000467766	ENST00000306627		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000467766	ENST00000346855		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000467766	ENST00000467766		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000467766	ENST00000424381		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000467766	ENST00000475680		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000424381	ENST00000306627		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000424381	ENST00000346855		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000424381	ENST00000467766		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000424381	ENST00000424381		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000424381	ENST00000475680		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000475680	ENST00000306627		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000475680	ENST00000346855		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000475680	ENST00000467766		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000475680	ENST00000424381		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000475680	ENST00000475680		ChiTaRS3.1			AK022062	UBE2E1	chr3	23903708	+	UBE2E1	chr3	23898916	+
intron-intron	ENST00000398411	ENST00000546474		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000327359		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000440513		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000392557		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000379937		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000547530		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000446501		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000379932		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000551787		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000549044		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398411	ENST00000548421		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000546474		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000327359		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000440513		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000392557		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000379937		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000547530		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000446501		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000379932		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000551787		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000549044		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000376925	ENST00000548421		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000546474		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000327359		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000440513		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000392557		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000379937		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000547530		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000446501		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000379932		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000551787		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000549044		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000398409	ENST00000548421		ChiTaRS3.1			BF926892	CST3	chr20	23614384	+	BRF1	chr14	105735506	+
intron-intron	ENST00000529639	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529639	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000531743	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000525297	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000527548	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000279259	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000529259	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000394532		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000309032		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000544785		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
intron-intron	ENST00000434372	ENST00000394531		ChiTaRS3.1			BG479472	FAU	chr11	64888479	+	BAD	chr11	64052162	-
5CDS-intron	ENST00000393784	ENST00000392313		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
5CDS-intron	ENST00000393784	ENST00000262815		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
5CDS-intron	ENST00000393784	ENST00000586189		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000519860	ENST00000392313		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000519860	ENST00000262815		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000519860	ENST00000586189		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000523291	ENST00000392313		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000523291	ENST00000262815		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000523291	ENST00000586189		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000326654	ENST00000392313		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000326654	ENST00000262815		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
intron-intron	ENST00000326654	ENST00000586189		ChiTaRS3.1			BI045862	ERGIC1	chr5	172351030	-	MAU2	chr19	19445760	+
5CDS-intron	ENST00000340296	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000340296	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000534253	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000263811	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000397119	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000410079	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000508530	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409197	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409317	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409773	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000409453	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000340296		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000534253		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000263811		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000397119		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000410079		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000508530		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000409197		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000409317		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000409773		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000409453		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
5CDS-intron	ENST00000358002	ENST00000358002		ChiTaRS3.1			CA311072	DYNC1I2	chr2	172546721	-	DYNC1I2	chr2	172571949	-
intron-intron	ENST00000522243	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000522243	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000522243	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000522243	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000522243	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000522243	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000522243	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000522243	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000522243	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000422546	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000422546	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000422546	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000422546	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000422546	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000422546	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000422546	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000422546	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000422546	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000260130	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000260130	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000260130	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000260130	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000260130	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000260130	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000260130	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000260130	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000260130	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000447182	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000447182	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000447182	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000447182	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000447182	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000447182	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000447182	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000447182	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000447182	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000413219	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000413219	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000413219	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000413219	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000413219	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000413219	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000413219	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000413219	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000413219	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000424270	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000424270	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000424270	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000424270	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000424270	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000424270	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000424270	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000424270	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000424270	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000523483	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000523483	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000523483	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000523483	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000523483	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000523483	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000523483	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000523483	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-intron	ENST00000523483	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000520168	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000520168	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000520168	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000520168	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000520168	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000520168	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000520168	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000520168	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000520168	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000447267	ENST00000522243		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000447267	ENST00000422546		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000447267	ENST00000260130		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000447267	ENST00000447182		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000447267	ENST00000413219		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000447267	ENST00000424270		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-3UTR	ENST00000447267	ENST00000523483		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000447267	ENST00000520168		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
intron-intron	ENST00000447267	ENST00000447267		ChiTaRS3.1			CN277922	SDCBP	chr8	59495283	-	SDCBP	chr8	59495338	+
3UTR-3UTR	ENST00000368635	ENST00000368635		ChiTaRS3.1			BG118012	MARCKS	chr6	114183688	-	MARCKS	chr6	114183719	+
intron-3CDS	ENST00000535254	ENST00000535254		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000535254	ENST00000409311		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000535254	ENST00000302759		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-intron	ENST00000535254	ENST00000478175		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000409311	ENST00000535254		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000409311	ENST00000409311		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000409311	ENST00000302759		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-intron	ENST00000409311	ENST00000478175		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000302759	ENST00000535254		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000302759	ENST00000409311		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000302759	ENST00000302759		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-intron	ENST00000302759	ENST00000478175		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000478175	ENST00000535254		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000478175	ENST00000409311		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-3CDS	ENST00000478175	ENST00000302759		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-intron	ENST00000478175	ENST00000478175		ChiTaRS3.1			BG403632	BUB1	chr2	111395628	+	BUB1	chr2	111395563	-
intron-intron	ENST00000360289	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000360289	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000360289	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000360289	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000360289	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000360289	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000448642	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000404387	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000298649	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000359426	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000360289		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000448642		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000404387		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000298649		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000359426		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
intron-intron	ENST00000494253	ENST00000494253		ChiTaRS3.1			BE162082	HK1	chr10	71050599	-	HK1	chr10	71050898	+
Frame-shit	ENST00000425019	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000425019	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000425019	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000324219	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000324219	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000324219	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000350198	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000350198	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000350198	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000302217	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000302217	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3UTR	ENST00000302217	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000413150	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000413150	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000413150	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000347699	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000347699	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000347699	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000456652	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000456652	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3UTR	ENST00000456652	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000350878	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
Frame-shit	ENST00000350878	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
5CDS-3UTR	ENST00000350878	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000498066	ENST00000368346		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3CDS	ENST00000498066	ENST00000392403		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
intron-3UTR	ENST00000498066	ENST00000548830		ChiTaRS3.1			BE929112	MAP4K4	chr2	102456351	+	ASH1L	chr1	155451874	+
3UTR-intron	ENST00000444961	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000444961	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000448882	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000448882	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000557098	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000557098	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000298902	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000298902	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000557634	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000557634	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000555744	ENST00000361204		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-intron	ENST00000555744	ENST00000491541		ChiTaRS3.1			AI572092	IFI27	chr14	94582936	-	SREBF2	chr22	42241958	-
3UTR-3UTR	ENST00000376929	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-intron	ENST00000376929	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000376929	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000376929	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000376929	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000376929	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-3UTR	ENST00000506690	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-intron	ENST00000506690	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-3UTR	ENST00000506690	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-3UTR	ENST00000506690	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-3UTR	ENST00000506690	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
intron-3UTR	ENST00000506690	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000389805	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-intron	ENST00000389805	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000389805	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000389805	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000389805	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000389805	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000402874	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-intron	ENST00000402874	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000402874	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000402874	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000402874	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000402874	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000510187	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-intron	ENST00000510187	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000510187	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000510187	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000510187	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000510187	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000360718	ENST00000376929		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-intron	ENST00000360718	ENST00000506690		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000360718	ENST00000389805		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000360718	ENST00000402874		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000360718	ENST00000510187		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
3UTR-3UTR	ENST00000360718	ENST00000360718		ChiTaRS3.1			AA071142	SQSTM1	chr5	179264039	-	SQSTM1	chr5	179264010	+
Frame-shit	ENST00000379888	ENST00000343098		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
Frame-shit	ENST00000379888	ENST00000424728		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
5CDS-intron	ENST00000379888	ENST00000465275		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
5CDS-intron	ENST00000379888	ENST00000546113		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
Frame-shit	ENST00000446108	ENST00000343098		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
Frame-shit	ENST00000446108	ENST00000424728		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
5CDS-intron	ENST00000446108	ENST00000465275		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
5CDS-intron	ENST00000446108	ENST00000546113		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
intron-3CDS	ENST00000476706	ENST00000343098		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
intron-3CDS	ENST00000476706	ENST00000424728		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
intron-intron	ENST00000476706	ENST00000465275		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
intron-intron	ENST00000476706	ENST00000546113		ChiTaRS3.1			BE704322	RBM17	chr10	6148174	+	FSIP2	chr2	186678427	+
intron-3CDS	ENST00000394936	ENST00000394936		ChiTaRS3.1			BE698722	PSAP	chr10	73579337	+	PSAP	chr10	73579252	-
intron-3CDS	ENST00000394936	ENST00000394934		ChiTaRS3.1			BE698722	PSAP	chr10	73579337	+	PSAP	chr10	73579252	-
intron-3CDS	ENST00000394934	ENST00000394936		ChiTaRS3.1			BE698722	PSAP	chr10	73579337	+	PSAP	chr10	73579252	-
intron-3CDS	ENST00000394934	ENST00000394934		ChiTaRS3.1			BE698722	PSAP	chr10	73579337	+	PSAP	chr10	73579252	-
intron-intron	ENST00000233099	ENST00000407597		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000233099	ENST00000424279		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000233099	ENST00000536365		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000233099	ENST00000380961		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000233099	ENST00000217964		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000233099	ENST00000497555		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000407597		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000424279		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000536365		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000380961		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000217964		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000354531	ENST00000497555		ChiTaRS3.1			AW993932	HEATR5B	chr2	37244584	+	TBL1X	chrX	9596866	-
intron-intron	ENST00000373840	ENST00000314393		ChiTaRS3.1			CV322242	RAB14	chr9	123957597	+	ZHX2	chr8	123937648	-
intron-3UTR	ENST00000221419	ENST00000399640		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-3UTR	ENST00000221419	ENST00000319914		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-3UTR	ENST00000221419	ENST00000521180		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-intron	ENST00000221419	ENST00000522652		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-intron	ENST00000221419	ENST00000519435		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-3UTR	ENST00000600873	ENST00000399640		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-3UTR	ENST00000600873	ENST00000319914		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-3UTR	ENST00000600873	ENST00000521180		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-intron	ENST00000600873	ENST00000522652		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
intron-intron	ENST00000600873	ENST00000519435		ChiTaRS3.1			BI015032	HNRNPL	chr19	39333309	+	ST3GAL1	chr8	134468738	-
Frame-shit	ENST00000375437	ENST00000377069		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000375437	ENST00000542973		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000375437	ENST00000377071		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-3UTR	ENST00000375437	ENST00000536437		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000375437	ENST00000538046		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000375437	ENST00000543852		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000357398	ENST00000377069		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000357398	ENST00000542973		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000357398	ENST00000377071		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-3UTR	ENST00000357398	ENST00000536437		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000357398	ENST00000538046		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000357398	ENST00000543852		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000283256	ENST00000377069		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000283256	ENST00000542973		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000283256	ENST00000377071		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-3UTR	ENST00000283256	ENST00000536437		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000283256	ENST00000538046		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000283256	ENST00000543852		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000375427	ENST00000377069		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000375427	ENST00000542973		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
Frame-shit	ENST00000375427	ENST00000377071		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-3UTR	ENST00000375427	ENST00000536437		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000375427	ENST00000538046		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
5CDS-intron	ENST00000375427	ENST00000543852		ChiTaRS3.1			DA224792	SCN2A	chr2	166172199	-	KDM2B	chr12	121868199	-
intron-intron	ENST00000283290	ENST00000382148		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000447367		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382150		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382152		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000509207		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000382149		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000283290	ENST00000359001		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382148		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000447367		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382150		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382152		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000509207		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000382149		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000402314	ENST00000359001		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382148		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000447367		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382150		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382152		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000509207		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000382149		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
intron-intron	ENST00000495756	ENST00000359001		ChiTaRS3.1			AW386112	ATG3	chr3	112260688	+	KCNIP4	chr4	21235057	-
5CDS-intron	ENST00000353801	ENST00000353801		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000353801	ENST00000371646		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000353801	ENST00000371554		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371646	ENST00000353801		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371646	ENST00000371646		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371646	ENST00000371554		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371554	ENST00000353801		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371554	ENST00000371646		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5CDS-intron	ENST00000371554	ENST00000371554		ChiTaRS3.1			BF918492	HSP90AB1	chr6	44218296	+	HSP90AB1	chr6	44218707	-
5UTR-intron	ENST00000417689	ENST00000544798		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-5UTR	ENST00000417689	ENST00000238156		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-intron	ENST00000417689	ENST00000545135		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-5UTR	ENST00000417689	ENST00000545891		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-intron	ENST00000317091	ENST00000544798		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-5UTR	ENST00000317091	ENST00000238156		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-intron	ENST00000317091	ENST00000545135		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
5UTR-5UTR	ENST00000317091	ENST00000545891		ChiTaRS3.1			BG036772	CES2	chr16	66968497	+	CCDC92	chr12	124457214	-
intron-3CDS	ENST00000456989	ENST00000322723		ChiTaRS3.1			CN335102	RAPGEFL1	chr17	38343661	+	NCL	chr2	232320300	-
intron-3CDS	ENST00000544503	ENST00000322723		ChiTaRS3.1			CN335102	RAPGEFL1	chr17	38343661	+	NCL	chr2	232320300	-
intron-3CDS	ENST00000264644	ENST00000322723		ChiTaRS3.1			CN335102	RAPGEFL1	chr17	38343661	+	NCL	chr2	232320300	-
intron-3CDS	ENST00000540388	ENST00000322723		ChiTaRS3.1			CN335102	RAPGEFL1	chr17	38343661	+	NCL	chr2	232320300	-
intron-3CDS	ENST00000436615	ENST00000322723		ChiTaRS3.1			CN335102	RAPGEFL1	chr17	38343661	+	NCL	chr2	232320300	-
intron-3CDS	ENST00000526148	ENST00000526148		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000526148	ENST00000525681		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000526148	ENST00000339995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000526148	ENST00000396525		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525681	ENST00000526148		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525681	ENST00000525681		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525681	ENST00000339995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525681	ENST00000396525		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000339995	ENST00000526148		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000339995	ENST00000525681		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000339995	ENST00000339995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000339995	ENST00000396525		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000396525	ENST00000526148		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000396525	ENST00000525681		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000396525	ENST00000339995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000396525	ENST00000396525		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525995	ENST00000526148		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525995	ENST00000525681		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525995	ENST00000339995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-3CDS	ENST00000525995	ENST00000396525		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			AW367062	EIF4G2	chr11	10827587	+	EIF4G2	chr11	10822574	-
intron-intron	ENST00000607628	ENST00000345366		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000607628	ENST00000336844		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000607628	ENST00000392886		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000607628	ENST00000560142		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000480258	ENST00000345366		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000480258	ENST00000336844		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000480258	ENST00000392886		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000480258	ENST00000560142		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000606822	ENST00000345366		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000606822	ENST00000336844		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000606822	ENST00000392886		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000606822	ENST00000560142		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000294241	ENST00000345366		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000294241	ENST00000336844		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000294241	ENST00000392886		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
intron-intron	ENST00000294241	ENST00000560142		ChiTaRS3.1			AA368822	DCP1A	chr3	53324408	+	CSH2	chr17	61949962	-
3UTR-intron	ENST00000296161	ENST00000381538		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
3UTR-intron	ENST00000296161	ENST00000507489		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
3UTR-intron	ENST00000296161	ENST00000329043		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
intron-intron	ENST00000383661	ENST00000381538		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
intron-intron	ENST00000383661	ENST00000507489		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
intron-intron	ENST00000383661	ENST00000329043		ChiTaRS3.1			BE715922	DTX3L	chr3	122293842	+	NFXL1	chr4	47858072	-
intron-3UTR	ENST00000263795	ENST00000256319		ChiTaRS3.1			CR737222	WDR76	chr15	44136354	+	C14orf1	chr14	76117876	-
intron-3UTR	ENST00000381246	ENST00000256319		ChiTaRS3.1			CR737222	WDR76	chr15	44136354	+	C14orf1	chr14	76117876	-
intron-3UTR	ENST00000478130	ENST00000256319		ChiTaRS3.1			CR737222	WDR76	chr15	44136354	+	C14orf1	chr14	76117876	-
3UTR-3UTR	ENST00000378883	ENST00000378883		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378883	ENST00000378896		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000378883	ENST00000378886		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378883	ENST00000265187		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000378883		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000378896		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000378896	ENST00000378886		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000265187		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000378883		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000378896		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-intron	ENST00000378886	ENST00000378886		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000265187		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000378883		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000378896		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000265187	ENST00000378886		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000265187		ChiTaRS3.1			AA226582	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3CDS	ENST00000273153	ENST00000273153		ChiTaRS3.1			BI005822	CSRNP1	chr3	39184682	-	CSRNP1	chr3	39184910	+
intron-3CDS	ENST00000273153	ENST00000514182		ChiTaRS3.1			BI005822	CSRNP1	chr3	39184682	-	CSRNP1	chr3	39184910	+
intron-3CDS	ENST00000514182	ENST00000273153		ChiTaRS3.1			BI005822	CSRNP1	chr3	39184682	-	CSRNP1	chr3	39184910	+
intron-3CDS	ENST00000514182	ENST00000514182		ChiTaRS3.1			BI005822	CSRNP1	chr3	39184682	-	CSRNP1	chr3	39184910	+
intron-intron	ENST00000263640	ENST00000517913		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000263640	ENST00000435422		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000263640	ENST00000447401		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000263640	ENST00000337851		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000409283	ENST00000517913		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000409283	ENST00000435422		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000409283	ENST00000447401		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000409283	ENST00000337851		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000434821	ENST00000517913		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000434821	ENST00000435422		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000434821	ENST00000447401		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000434821	ENST00000337851		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000410057	ENST00000517913		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000410057	ENST00000435422		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000410057	ENST00000447401		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000410057	ENST00000337851		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000487456	ENST00000517913		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000487456	ENST00000435422		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000487456	ENST00000447401		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000487456	ENST00000337851		ChiTaRS3.1			BF873192	ACVR1	chr2	158601300	-	SGCD	chr5	155275089	-
intron-intron	ENST00000375856	ENST00000375856		ChiTaRS3.1			BX104742	IRS2	chr13	110417464	-	IRS2	chr13	110433933	-
intron-intron	ENST00000549190	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000549190	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000549190	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000549190	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000549190	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000549190	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000395580	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395580	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395580	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395580	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000395580	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395580	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000337898	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000337898	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000337898	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000337898	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000337898	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000337898	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000358314	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000358314	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000358314	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000358314	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000358314	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000358314	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000395568	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395568	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395568	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395568	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000395568	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000395568	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000256678	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000256678	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000256678	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000256678	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000256678	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000256678	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000449194	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000449194	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000449194	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000449194	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000449194	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000449194	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000552761	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000552761	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000552761	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000552761	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000552761	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000552761	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000317560	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000317560	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000317560	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000317560	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000317560	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000317560	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-intron	ENST00000432191	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-3UTR	ENST00000432191	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-3UTR	ENST00000432191	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-3UTR	ENST00000432191	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-intron	ENST00000432191	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
3UTR-3UTR	ENST00000432191	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000550535	ENST00000405015		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000550535	ENST00000431489		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000550535	ENST00000354487		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000550535	ENST00000263991		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000550535	ENST00000405289		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-3UTR	ENST00000550535	ENST00000496857		ChiTaRS3.1			AW366752	PPHLN1	chr12	42841429	-	EHBP1	chr2	63272766	-
intron-intron	ENST00000326764	ENST00000537618		ChiTaRS3.1			BF762342	LENG8	chr19	54962065	-	NDUFA8	chr9	124906621	-
intron-intron	ENST00000326764	ENST00000373768		ChiTaRS3.1			BF762342	LENG8	chr19	54962065	-	NDUFA8	chr9	124906621	-
intron-intron	ENST00000376514	ENST00000537618		ChiTaRS3.1			BF762342	LENG8	chr19	54962065	-	NDUFA8	chr9	124906621	-
intron-intron	ENST00000376514	ENST00000373768		ChiTaRS3.1			BF762342	LENG8	chr19	54962065	-	NDUFA8	chr9	124906621	-
intron-3UTR	ENST00000283713	ENST00000338483		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000283713	ENST00000538999		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000283713	ENST00000538320		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000283713	ENST00000426621		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000283713	ENST00000407965		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000383759	ENST00000338483		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000383759	ENST00000538999		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000383759	ENST00000538320		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000383759	ENST00000426621		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000383759	ENST00000407965		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000465644	ENST00000338483		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000465644	ENST00000538999		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000465644	ENST00000538320		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000465644	ENST00000426621		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000465644	ENST00000407965		ChiTaRS3.1			BF736162	VILL	chr3	38034647	-	MAFF	chr22	38611618	+
intron-3UTR	ENST00000261716	ENST00000340855		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000537071		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000541269		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000422081		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000370441		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000490775		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000370443		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000427113		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000261716	ENST00000428056		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-3UTR	ENST00000536202	ENST00000340855		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000537071		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000541269		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000422081		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000370441		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000490775		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000370443		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000427113		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-intron	ENST00000536202	ENST00000428056		ChiTaRS3.1			AW138862	TAOK1	chr17	27766509	-	IDS	chrX	148561784	+
intron-3CDS	ENST00000418458	ENST00000418458		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3CDS	ENST00000418458	ENST00000394799		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3UTR	ENST00000418458	ENST00000460073		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3CDS	ENST00000394799	ENST00000418458		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3CDS	ENST00000394799	ENST00000394799		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3UTR	ENST00000394799	ENST00000460073		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3CDS	ENST00000460073	ENST00000418458		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3CDS	ENST00000460073	ENST00000394799		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
intron-3UTR	ENST00000460073	ENST00000460073		ChiTaRS3.1			BF826182	GNL3	chr3	52721169	-	GNL3	chr3	52721600	+
3UTR-3UTR	ENST00000517309	ENST00000517309		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-3UTR	ENST00000517309	ENST00000455950		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-intron	ENST00000517309	ENST00000518776		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-intron	ENST00000517309	ENST00000522072		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-3UTR	ENST00000455950	ENST00000517309		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-3UTR	ENST00000455950	ENST00000455950		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-intron	ENST00000455950	ENST00000518776		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
3UTR-intron	ENST00000455950	ENST00000522072		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-3UTR	ENST00000518776	ENST00000517309		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-3UTR	ENST00000518776	ENST00000455950		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-intron	ENST00000518776	ENST00000518776		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-intron	ENST00000518776	ENST00000522072		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-3UTR	ENST00000522072	ENST00000517309		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-3UTR	ENST00000522072	ENST00000455950		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-intron	ENST00000522072	ENST00000518776		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-intron	ENST00000522072	ENST00000522072		ChiTaRS3.1			BE677852	PTDSS1	chr8	97346653	-	PTDSS1	chr8	97346007	+
intron-intron	ENST00000393853	ENST00000393853		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000393853	ENST00000240335		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000393853	ENST00000589449		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000240335	ENST00000393853		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000240335	ENST00000240335		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000240335	ENST00000589449		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000589449	ENST00000393853		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000589449	ENST00000240335		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-intron	ENST00000589449	ENST00000589449		ChiTaRS3.1			AA347922	TBX4	chr17	59541465	+	TBX4	chr17	59538548	+
intron-3UTR	ENST00000590652	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000590652	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000590652	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000587129	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000587129	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000587129	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000590842	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000590842	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000590842	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000334295	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000334295	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000334295	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000593035	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000593035	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000593035	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000383056	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000383056	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000383056	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000589049	ENST00000523944		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3UTR	ENST00000589049	ENST00000262105		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-intron	ENST00000589049	ENST00000518680		ChiTaRS3.1			BC038772	TPGS2	chr18	34465799	+	MCM4	chr8	48889708	+
intron-3CDS	ENST00000346178	ENST00000346178		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000346178	ENST00000356638		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000346178	ENST00000534779		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000346178	ENST00000540933		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-intron	ENST00000346178	ENST00000534422		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000356638	ENST00000346178		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000356638	ENST00000356638		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000356638	ENST00000534779		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000356638	ENST00000540933		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-intron	ENST00000356638	ENST00000534422		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
In-frame	ENST00000534779	ENST00000346178		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
In-frame	ENST00000534779	ENST00000356638		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
In-frame	ENST00000534779	ENST00000534779		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
In-frame	ENST00000534779	ENST00000540933		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
5CDS-intron	ENST00000534779	ENST00000534422		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000540933	ENST00000346178		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000540933	ENST00000356638		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000540933	ENST00000534779		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000540933	ENST00000540933		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-intron	ENST00000540933	ENST00000534422		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000534422	ENST00000346178		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000534422	ENST00000356638		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000534422	ENST00000534779		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-3CDS	ENST00000534422	ENST00000540933		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
intron-intron	ENST00000534422	ENST00000534422		ChiTaRS3.1			BF987702	GANAB	chr11	62393248	+	GANAB	chr11	62396350	-
5CDS-intron	ENST00000552285	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000552285	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000552285	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000315970	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000315970	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000315970	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000439210	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000439210	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000439210	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389146	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389146	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389146	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000413095	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000413095	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000413095	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000551035	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000551035	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000551035	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000435406	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000435406	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000435406	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000257966	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000257966	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000257966	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389142	ENST00000216181		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389142	ENST00000475726		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
5CDS-intron	ENST00000389142	ENST00000401701		ChiTaRS3.1			BF873562	OS9	chr12	58111944	-	MYH9	chr22	36691770	-
intron-3CDS	ENST00000599715	ENST00000358794		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000305218		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000538945		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000599715	ENST00000543847		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000599715	ENST00000540501		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000358794		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000305218		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000538945		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000006724	ENST00000543847		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000006724	ENST00000540501		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000358794		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000305218		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000538945		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000338196	ENST00000543847		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000338196	ENST00000540501		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000358794		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000305218		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000538945		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000401731	ENST00000543847		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000401731	ENST00000540501		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000358794		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000305218		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000538945		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3CDS	ENST00000602225	ENST00000543847		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-3UTR	ENST00000602225	ENST00000540501		ChiTaRS3.1			BQ326142	CEACAM7	chr19	42191140	+	STIP1	chr11	63960700	+
intron-intron	ENST00000295633	ENST00000481038		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-intron	ENST00000295633	ENST00000379019		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-intron	ENST00000424703	ENST00000481038		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-intron	ENST00000424703	ENST00000379019		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-intron	ENST00000485968	ENST00000481038		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-intron	ENST00000485968	ENST00000379019		ChiTaRS3.1			BE763222	FSTL1	chr3	120113901	-	GPCPD1	chr20	5542846	+
intron-3CDS	ENST00000261674	ENST00000358632		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000268053		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000419019		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000541301		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000467407		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000358632		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000268053		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000419019		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000541301		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000467407		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000358632		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000268053		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000419019		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000541301		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000467407		ChiTaRS3.1			BG011362	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3UTR	ENST00000377671	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000377671	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000377671	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000396026	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000396026	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000396026	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000402618	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000402618	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000402618	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000401790	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000401790	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000401790	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000538547	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000538547	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000538547	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000535822	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000535822	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000535822	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000316358	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000316358	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000316358	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000462170	ENST00000374580		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-3UTR	ENST00000462170	ENST00000374574		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000462170	ENST00000479069		ChiTaRS3.1			AK074502	ZNF133	chr20	18287341	+	BMPR2	chr2	203432214	+
intron-intron	ENST00000523629	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000523629	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000396218	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000265814	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000360348	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000436581	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000520724	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000518844	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000522163	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000422361	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000344691		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000325074		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000437180		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000300305		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000399240		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000486278		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000494829		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000521553	ENST00000358356		ChiTaRS3.1			DQ202694	RUNX1T1	chr8	93082546	-	RUNX1	chr21	36219456	-
intron-intron	ENST00000319359	ENST00000367088		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000319359	ENST00000367089		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000319359	ENST00000367085		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000497465	ENST00000367088		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000497465	ENST00000367089		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000497465	ENST00000367085		ChiTaRS3.1			BU934532	ELL3	chr15	44085299	+	DYNLT1	chr6	159065771	-
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY282395	KMT2A	chr11	118359133	+	MLLT3	chr9	20399061	-
intron-intron	ENST00000439944	ENST00000514251		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000321464		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000441582		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000512327		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000514251		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000321464		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000441582		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000512327		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000514251		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000321464		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000441582		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000512327		ChiTaRS3.1			BE072822	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
In-frame	ENST00000323851	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
In-frame	ENST00000323851	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
In-frame	ENST00000323851	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000323851	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
In-frame	ENST00000354944	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
In-frame	ENST00000354944	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
In-frame	ENST00000354944	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000354944	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000521414	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000521414	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000521414	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000521414	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-3CDS	ENST00000537882	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-3CDS	ENST00000537882	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-3CDS	ENST00000537882	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5UTR-intron	ENST00000537882	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
Frame-shit	ENST00000414097	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
Frame-shit	ENST00000414097	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
Frame-shit	ENST00000414097	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
5CDS-intron	ENST00000414097	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518176	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518176	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518176	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518176	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000522476	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000522476	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000522476	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000522476	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518066	ENST00000398907		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518066	ENST00000398905		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000518066	ENST00000288319		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000398897		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000398911		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000398910		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000417133		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000442448		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000453032		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000398919		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000429727		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-intron	ENST00000518066	ENST00000485493		ChiTaRS3.1			FJ627787	NDRG1	chr8	134296491	-	ERG	chr21	39817546	-
intron-3CDS	ENST00000297338	ENST00000297338		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000523986		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000517749		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000518055		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000523547		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000523986	ENST00000297338		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000523986		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000517749		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000518055		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000523547		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000517749	ENST00000297338		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000523986		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000517749		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000518055		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000523547		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000518055	ENST00000297338		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000523986		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000517749		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000518055		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000523547		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000523547	ENST00000297338		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000523986		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000517749		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000518055		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000523547		ChiTaRS3.1			BI048002	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000536551	ENST00000536551		ChiTaRS3.1			CF890892	STMND1	chr6	17122585	-	STMND1	chr6	17123347	-
intron-intron	ENST00000589786	ENST00000589786		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-3UTR	ENST00000589786	ENST00000284006		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000589786	ENST00000588881		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000589786	ENST00000430256		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000589786	ENST00000592363		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
3UTR-intron	ENST00000284006	ENST00000589786		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
3UTR-3UTR	ENST00000284006	ENST00000284006		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
3UTR-intron	ENST00000284006	ENST00000588881		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
3UTR-intron	ENST00000284006	ENST00000430256		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
3UTR-intron	ENST00000284006	ENST00000592363		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000588881	ENST00000589786		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-3UTR	ENST00000588881	ENST00000284006		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000588881	ENST00000588881		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000588881	ENST00000430256		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000588881	ENST00000592363		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000430256	ENST00000589786		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-3UTR	ENST00000430256	ENST00000284006		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000430256	ENST00000588881		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000430256	ENST00000430256		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000430256	ENST00000592363		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000592363	ENST00000589786		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-3UTR	ENST00000592363	ENST00000284006		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000592363	ENST00000588881		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000592363	ENST00000430256		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-intron	ENST00000592363	ENST00000592363		ChiTaRS3.1			BG283452	KCTD15	chr19	34305505	-	KCTD15	chr19	34305554	+
intron-5UTR	ENST00000481781	ENST00000237014		ChiTaRS3.1			CA773572	INS-IGF2	chr11	2182120	+	TTR	chr18	29171854	+
intron-5UTR	ENST00000397270	ENST00000237014		ChiTaRS3.1			CA773572	INS-IGF2	chr11	2182120	+	TTR	chr18	29171854	+
intron-intron	ENST00000604560	ENST00000519728		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000604560	ENST00000520220		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000604560	ENST00000420292		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000452142	ENST00000519728		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000452142	ENST00000520220		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000452142	ENST00000420292		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000267012	ENST00000519728		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000267012	ENST00000520220		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000267012	ENST00000420292		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000544402	ENST00000519728		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000544402	ENST00000520220		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000544402	ENST00000420292		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000603260	ENST00000519728		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000603260	ENST00000520220		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000603260	ENST00000420292		ChiTaRS3.1			BF925862	BIN2	chr12	51675103	+	LYN	chr8	56830819	+
intron-intron	ENST00000325351	ENST00000262135		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000379925		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000563746		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000564374		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568009		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568653		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000566096		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000262135		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000379925		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000563746		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000564374		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568009		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568653		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000566096		ChiTaRS3.1			AI652972	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-5UTR	ENST00000469972	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000469972	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372047	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372050	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393160	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000393157	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000542690	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000469972		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000372047		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000372050		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000393160		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000393157		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000542690		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-5UTR	ENST00000372062	ENST00000372062		ChiTaRS3.1			DA570172	RALGDS	chr9	135979671	-	RALGDS	chr9	135984070	-
intron-intron	ENST00000390394	ENST00000390394		ChiTaRS3.1			AA469352	TRBV20-1	chr16	2011826	+	TRBV20-1	chr16	2011586	-
3UTR-3UTR	ENST00000249356	ENST00000299427		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-3UTR	ENST00000249356	ENST00000533371		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-intron	ENST00000249356	ENST00000534644		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-intron	ENST00000249356	ENST00000528657		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-3UTR	ENST00000465725	ENST00000299427		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-3UTR	ENST00000465725	ENST00000533371		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-intron	ENST00000465725	ENST00000534644		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-intron	ENST00000465725	ENST00000528657		ChiTaRS3.1			AA368502	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
5CDS-5UTR	ENST00000306688	ENST00000306688		ChiTaRS3.1			BG775652	LRRC45	chr17	79985604	+	LRRC45	chr17	79981421	+
5CDS-3UTR	ENST00000306688	ENST00000583383		ChiTaRS3.1			BG775652	LRRC45	chr17	79985604	+	LRRC45	chr17	79981421	+
intron-5UTR	ENST00000583383	ENST00000306688		ChiTaRS3.1			BG775652	LRRC45	chr17	79985604	+	LRRC45	chr17	79981421	+
intron-3UTR	ENST00000583383	ENST00000583383		ChiTaRS3.1			BG775652	LRRC45	chr17	79985604	+	LRRC45	chr17	79981421	+
3UTR-3UTR	ENST00000355072	ENST00000306749		ChiTaRS3.1			BM710952	HTT	chr4	3243805	+	FASN	chr17	80036969	-
3UTR-intron	ENST00000355072	ENST00000579758		ChiTaRS3.1			BM710952	HTT	chr4	3243805	+	FASN	chr17	80036969	-
intron-3UTR	ENST00000513806	ENST00000306749		ChiTaRS3.1			BM710952	HTT	chr4	3243805	+	FASN	chr17	80036969	-
intron-intron	ENST00000513806	ENST00000579758		ChiTaRS3.1			BM710952	HTT	chr4	3243805	+	FASN	chr17	80036969	-
intron-intron	ENST00000336095	ENST00000336095		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000336095	ENST00000358395		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000336095	ENST00000432261		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000336095	ENST00000545616		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000358395	ENST00000336095		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000358395	ENST00000358395		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000358395	ENST00000432261		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000358395	ENST00000545616		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000432261	ENST00000336095		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000432261	ENST00000358395		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000432261	ENST00000432261		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000432261	ENST00000545616		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000545616	ENST00000336095		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000545616	ENST00000358395		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000545616	ENST00000432261		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000545616	ENST00000545616		ChiTaRS3.1			BF830842	RNF24	chr20	3983032	-	RNF24	chr20	3983657	-
intron-intron	ENST00000373232	ENST00000468874		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-3UTR	ENST00000373232	ENST00000542230		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-intron	ENST00000608321	ENST00000468874		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-3UTR	ENST00000608321	ENST00000542230		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-intron	ENST00000495346	ENST00000468874		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-3UTR	ENST00000495346	ENST00000542230		ChiTaRS3.1			BU570352	PPA1	chr10	71968882	-	TMEM50B	chr21	34822563	-
intron-intron	ENST00000336470	ENST00000336470		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000336470	ENST00000360845		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000336470	ENST00000489691		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000360845	ENST00000336470		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000360845	ENST00000360845		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000360845	ENST00000489691		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000489691	ENST00000336470		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000489691	ENST00000360845		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000489691	ENST00000489691		ChiTaRS3.1			AI700532	GNL3L	chrX	54588740	-	GNL3L	chrX	54589821	-
intron-intron	ENST00000340666	ENST00000262995		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000340666	ENST00000262994		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000340666	ENST00000505913		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000340666	ENST00000515388		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000295987	ENST00000262995		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000295987	ENST00000262994		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000295987	ENST00000505913		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000295987	ENST00000515388		ChiTaRS3.1			AW897752	SYN1	chrX	47431688	-	GAB1	chr4	144285280	-
intron-intron	ENST00000517298	ENST00000517298		ChiTaRS3.1			BE162382	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000517298	ENST00000321764		ChiTaRS3.1			BE162382	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000321764	ENST00000517298		ChiTaRS3.1			BE162382	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000321764	ENST00000321764		ChiTaRS3.1			BE162382	CA13	chr8	86276224	+	CA13	chr8	86275891	+
Frame-shit	ENST00000337619	ENST00000337619		ChiTaRS3.1			BG819332	AP1S1	chr7	100800704	-	AP1S1	chr7	100800740	+
intron-3UTR	ENST00000331872	ENST00000331872		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000331872	ENST00000417584		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000331872	ENST00000311223		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-5UTR	ENST00000331872	ENST00000491322		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000331872	ENST00000339526		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000417584	ENST00000331872		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000417584	ENST00000417584		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000417584	ENST00000311223		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-5UTR	ENST00000417584	ENST00000491322		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000417584	ENST00000339526		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000311223	ENST00000331872		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000311223	ENST00000417584		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000311223	ENST00000311223		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-5UTR	ENST00000311223	ENST00000491322		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000311223	ENST00000339526		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000491322	ENST00000331872		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000491322	ENST00000417584		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000491322	ENST00000311223		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-5UTR	ENST00000491322	ENST00000491322		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000491322	ENST00000339526		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000339526	ENST00000331872		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000339526	ENST00000417584		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000339526	ENST00000311223		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-5UTR	ENST00000339526	ENST00000491322		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-3UTR	ENST00000339526	ENST00000339526		ChiTaRS3.1			BF988852	GLUL	chr1	182353060	-	GLUL	chr1	182352944	+
intron-intron	ENST00000407008	ENST00000407008		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000407008	ENST00000583517		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000407008	ENST00000582037		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000407008		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000583517		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000582037		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000407008		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000583517		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000582037		ChiTaRS3.1			CF144002	NLK	chr17	26469570	-	NLK	chr17	26469039	+
5CDS-3UTR	ENST00000380629	ENST00000483233		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000380629	ENST00000315877		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-5UTR	ENST00000380629	ENST00000487005		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000380629	ENST00000395008		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000380629	ENST00000361143		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000380629	ENST00000461108		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-intron	ENST00000380629	ENST00000525795		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000523515	ENST00000483233		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000523515	ENST00000315877		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-5UTR	ENST00000523515	ENST00000487005		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000523515	ENST00000395008		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000523515	ENST00000361143		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000523515	ENST00000461108		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-intron	ENST00000523515	ENST00000525795		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000520409	ENST00000483233		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000520409	ENST00000315877		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-5UTR	ENST00000520409	ENST00000487005		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000520409	ENST00000395008		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000520409	ENST00000361143		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000520409	ENST00000461108		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-intron	ENST00000520409	ENST00000525795		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000518611	ENST00000483233		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000518611	ENST00000315877		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-5UTR	ENST00000518611	ENST00000487005		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000518611	ENST00000395008		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000518611	ENST00000361143		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-3UTR	ENST00000518611	ENST00000461108		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
5CDS-intron	ENST00000518611	ENST00000525795		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-3UTR	ENST00000521254	ENST00000483233		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-3UTR	ENST00000521254	ENST00000315877		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-5UTR	ENST00000521254	ENST00000487005		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-3UTR	ENST00000521254	ENST00000395008		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-3UTR	ENST00000521254	ENST00000361143		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-3UTR	ENST00000521254	ENST00000461108		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
3UTR-intron	ENST00000521254	ENST00000525795		ChiTaRS3.1			BQ355682	BNIP3L	chr8	26265839	-	ABHD14B	chr3	52003148	-
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082302	MAP3K7	chr6	91270213	+	MAP3K7	chr6	91269709	+
intron-intron	ENST00000421483	ENST00000549231		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
intron-intron	ENST00000421483	ENST00000355673		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
intron-intron	ENST00000421483	ENST00000431731		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
intron-intron	ENST00000441399	ENST00000549231		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
intron-intron	ENST00000441399	ENST00000355673		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
intron-intron	ENST00000441399	ENST00000431731		ChiTaRS3.1			BG001392	RAP2C-AS1	chrX	131556868	-	MBD6	chr12	57922014	-
5CDS-intron	ENST00000371917	ENST00000502630		ChiTaRS3.1			AW752522	ARFGEF2	chr20	47587847	+	TMED11P	chr4	1110360	+
intron-intron	ENST00000493140	ENST00000502630		ChiTaRS3.1			AW752522	ARFGEF2	chr20	47587847	+	TMED11P	chr4	1110360	+
Frame-shit	ENST00000401722	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000401722	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
In-frame	ENST00000228318	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000228318	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
In-frame	ENST00000188376	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000188376	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
Frame-shit	ENST00000551917	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000551917	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
Frame-shit	ENST00000552981	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000552981	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
intron-3CDS	ENST00000551265	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
intron-intron	ENST00000551265	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
intron-3CDS	ENST00000547534	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
intron-intron	ENST00000547534	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
Frame-shit	ENST00000549338	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000549338	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
Frame-shit	ENST00000548847	ENST00000366639		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
5CDS-intron	ENST00000548847	ENST00000602825		ChiTaRS3.1			BE739692	SLC25A3	chr12	98995210	-	TSNAX	chr1	231700307	-
3UTR-intron	ENST00000319211	ENST00000255175		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
3UTR-3UTR	ENST00000319211	ENST00000342374		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
3UTR-intron	ENST00000319211	ENST00000541235		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
3UTR-intron	ENST00000319211	ENST00000468234		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
intron-intron	ENST00000505600	ENST00000255175		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
intron-3UTR	ENST00000505600	ENST00000342374		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
intron-intron	ENST00000505600	ENST00000541235		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
intron-intron	ENST00000505600	ENST00000468234		ChiTaRS3.1			BE221242	F2R	chr5	76031267	-	SERINC3	chr20	43127276	+
intron-3CDS	ENST00000458694	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000458694	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000458694	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000458694	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000458694	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000359201	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000359201	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000359201	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000359201	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000359201	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394263	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394263	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394263	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394263	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394263	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394259	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394259	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394259	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394259	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394259	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394260	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394260	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394260	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394260	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000394260	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000463606	ENST00000229239		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000463606	ENST00000396856		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000463606	ENST00000396861		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000463606	ENST00000396859		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
intron-3CDS	ENST00000463606	ENST00000396858		ChiTaRS3.1			AJ711772	PRICKLE4	chr6	41757469	+	GAPDH	chr12	6647011	+
5CDS-3UTR	ENST00000302079	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
5CDS-3UTR	ENST00000580640	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
5CDS-3UTR	ENST00000503781	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
3UTR-3UTR	ENST00000383408	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
intron-3UTR	ENST00000538948	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
intron-3UTR	ENST00000285141	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
intron-3UTR	ENST00000581680	ENST00000330817		ChiTaRS3.1			AK098782	PIEZO2	chr18	10757968	-	ALG12	chr22	50297001	-
intron-intron	ENST00000262811	ENST00000480912		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000395728		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000375528		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000375530		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000375537		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000498185		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000415323		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000450323		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000440987		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000421926		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000551865		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000497104		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000436403		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000443951		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000420874		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000450075		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000552339		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000497361		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000420930		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000428442		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000450229		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000429506		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000547244		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000467139		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000446303		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000427405		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000454705		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000420336		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000546877		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000400006		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000469681		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000400008		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000383372		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000383373		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000550866		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000262811	ENST00000425250		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-5UTR	ENST00000262811	ENST00000487513		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000480912		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000395728		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000375528		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000375530		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000375537		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000498185		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000415323		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000450323		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000440987		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000421926		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000551865		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000497104		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000436403		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000443951		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000420874		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000450075		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000552339		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000497361		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000420930		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000428442		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000450229		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000429506		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000547244		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000467139		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000446303		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000427405		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000454705		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000420336		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000546877		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000400006		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000469681		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000400008		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000383372		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000383373		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000550866		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-intron	ENST00000608648	ENST00000425250		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
intron-5UTR	ENST00000608648	ENST00000487513		ChiTaRS3.1			BF873412	MAST3	chr19	18228513	+	EHMT2	chr6	3181283	+
Frame-shit	ENST00000001008	ENST00000001008		ChiTaRS3.1			BF084122	FKBP4	chr12	2912337	+	FKBP4	chr12	2909643	-
5CDS-intron	ENST00000001008	ENST00000540260		ChiTaRS3.1			BF084122	FKBP4	chr12	2912337	+	FKBP4	chr12	2909643	-
intron-3CDS	ENST00000540260	ENST00000001008		ChiTaRS3.1			BF084122	FKBP4	chr12	2912337	+	FKBP4	chr12	2909643	-
intron-intron	ENST00000540260	ENST00000540260		ChiTaRS3.1			BF084122	FKBP4	chr12	2912337	+	FKBP4	chr12	2909643	-
intron-intron	ENST00000392474	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392474	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392474	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392474	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392474	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392474	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000538733	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000337174	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000347034	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000324774	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000545538	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000412367	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000404169	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000402834	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000446440	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000392473	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000409426		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000441902		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000368890		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000368888		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000464105		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000535524	ENST00000414290		ChiTaRS3.1			BQ321472	CAMKK2	chr12	121698291	-	PIP5K1A	chr1	151171640	+
intron-intron	ENST00000458479	ENST00000277141		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375961		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375960		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375957		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375963		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000469004		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375948		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000458479	ENST00000375947		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000277141		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375961		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375960		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375957		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375963		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000469004		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375948		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000440052	ENST00000375947		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000277141		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375961		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375960		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375957		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375963		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000469004		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375948		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000455170	ENST00000375947		ChiTaRS3.1			CB410112	PAXBP1-AS1	chr21	34109013	+	ZCCHC6	chr9	88912308	-
intron-intron	ENST00000253363	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000253363	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000361162	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000361162	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000528062	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000528062	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000407261	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000407261	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000397370	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000397370	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000463098	ENST00000430629		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000463098	ENST00000536657		ChiTaRS3.1			BF762912	RBM39	chr20	34330111	+	WASF2	chr1	27752840	-
intron-intron	ENST00000380647	ENST00000380647		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000262360		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000425824		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000380641		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000380647	ENST00000484374		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000380647		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000262360		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000425824		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000380641		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000262360	ENST00000484374		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000380647		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000262360		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000425824		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000380641		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000425824	ENST00000484374		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000380647		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000262360		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000425824		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000380641		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000380641	ENST00000484374		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000380647		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000262360		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000425824		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000380641		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000484374	ENST00000484374		ChiTaRS3.1			BX109042	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380913	ENST00000396029		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000380913	ENST00000396032		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000380913	ENST00000371602		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000380913	ENST00000349014		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000493668	ENST00000396029		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000493668	ENST00000396032		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000493668	ENST00000371602		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000493668	ENST00000349014		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000418909	ENST00000396029		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000418909	ENST00000396032		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000418909	ENST00000371602		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000418909	ENST00000349014		ChiTaRS3.1			BE148732	SHROOM2	chrX	9807993	-	ADNP	chr20	49519223	+
intron-intron	ENST00000519685	ENST00000373129		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000519685	ENST00000373130		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000519685	ENST00000373132		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000519685	ENST00000482458		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000519685	ENST00000359297		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000522948	ENST00000373129		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000522948	ENST00000373130		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000522948	ENST00000373132		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000522948	ENST00000482458		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000522948	ENST00000359297		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000251822	ENST00000373129		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000251822	ENST00000373130		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000251822	ENST00000373132		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000251822	ENST00000482458		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000251822	ENST00000359297		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000523918	ENST00000373129		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000523918	ENST00000373130		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000523918	ENST00000373132		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000523918	ENST00000482458		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000523918	ENST00000359297		ChiTaRS3.1			BF445312	RHOBTB2	chr8	22877951	+	STK40	chr1	36823513	+
intron-intron	ENST00000430069	ENST00000380599		ChiTaRS3.1			AJ707222	TBL1XR1	chr3	176792513	-	ZBTB4	chr17	7377427	-
intron-intron	ENST00000430069	ENST00000311403		ChiTaRS3.1			AJ707222	TBL1XR1	chr3	176792513	-	ZBTB4	chr17	7377427	-
intron-intron	ENST00000457928	ENST00000380599		ChiTaRS3.1			AJ707222	TBL1XR1	chr3	176792513	-	ZBTB4	chr17	7377427	-
intron-intron	ENST00000457928	ENST00000311403		ChiTaRS3.1			AJ707222	TBL1XR1	chr3	176792513	-	ZBTB4	chr17	7377427	-
intron-3UTR	ENST00000393829	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-intron	ENST00000393829	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000393829	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-intron	ENST00000546249	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000546249	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-intron	ENST00000537728	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000537728	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-intron	ENST00000264649	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000264649	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-intron	ENST00000585525	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000585525	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-intron	ENST00000343619	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000343619	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-intron	ENST00000544137	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000544137	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000393829		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000546249		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000537728		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000264649		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-intron	ENST00000587797	ENST00000585525		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000343619		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000544137		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
3UTR-3UTR	ENST00000587797	ENST00000587797		ChiTaRS3.1			AA297522	ATP6V0A1	chr17	40674309	+	ATP6V0A1	chr17	40673367	+
intron-3UTR	ENST00000263805	ENST00000263805		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000263805	ENST00000565380		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000263805	ENST00000565611		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000263805	ENST00000565660		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-3UTR	ENST00000565380	ENST00000263805		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565380	ENST00000565380		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565380	ENST00000565611		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565380	ENST00000565660		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-3UTR	ENST00000565611	ENST00000263805		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565611	ENST00000565380		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565611	ENST00000565611		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565611	ENST00000565660		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-3UTR	ENST00000565660	ENST00000263805		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565660	ENST00000565380		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565660	ENST00000565611		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000565660	ENST00000565660		ChiTaRS3.1			AA508792	ZNF106	chr15	42706444	-	ZNF106	chr15	42706544	+
intron-intron	ENST00000334370	ENST00000334370		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000334370	ENST00000251268		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000334370	ENST00000378073		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000251268	ENST00000334370		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000251268	ENST00000251268		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000251268	ENST00000378073		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000378073	ENST00000334370		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000378073	ENST00000251268		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
intron-intron	ENST00000378073	ENST00000378073		ChiTaRS3.1			BU607742	MEGF8	chr6	33665400	+	MEGF8	chr6	33668274	-
3UTR-3UTR	ENST00000262613	ENST00000534336		ChiTaRS3.1			AA627452	SLC9A3R1	chr17	72765353	-	MALAT1	chr11	65268547	-
3UTR-3UTR	ENST00000413388	ENST00000534336		ChiTaRS3.1			AA627452	SLC9A3R1	chr17	72765353	-	MALAT1	chr11	65268547	-
intron-intron	ENST00000282120	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000282120	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000282120	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000282120	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000377386	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000377386	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000377386	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000377386	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000398263	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000398263	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000398263	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000398263	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409232	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409232	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409232	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409232	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409015	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409015	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409015	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000409015	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000444342	ENST00000264170		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000444342	ENST00000375773		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000444342	ENST00000409512		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-intron	ENST00000444342	ENST00000410015		ChiTaRS3.1			BF997792	TGOLN2	chr2	85547966	-	KYNU	chr2	143725968	-
intron-3UTR	ENST00000366618	ENST00000540691		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366618	ENST00000539106		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366618	ENST00000222307		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366618	ENST00000600796		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366618	ENST00000601630		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366618	ENST00000599000		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366618	ENST00000595073		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366618	ENST00000599319		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366618	ENST00000602094		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366618	ENST00000598830		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366617	ENST00000540691		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366617	ENST00000539106		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366617	ENST00000222307		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366617	ENST00000600796		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366617	ENST00000601630		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366617	ENST00000599000		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366617	ENST00000595073		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366617	ENST00000599319		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3UTR	ENST00000366617	ENST00000602094		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-intron	ENST00000366617	ENST00000598830		ChiTaRS3.1			BG196712	SLC35F3	chr1	234293335	+	KXD1	chr19	18679588	-
intron-3CDS	ENST00000216951	ENST00000216951		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-5UTR	ENST00000216951	ENST00000541098		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-intron	ENST00000216951	ENST00000451957		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-3CDS	ENST00000541098	ENST00000216951		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-5UTR	ENST00000541098	ENST00000541098		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-intron	ENST00000541098	ENST00000451957		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-3CDS	ENST00000451957	ENST00000216951		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-5UTR	ENST00000451957	ENST00000541098		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-intron	ENST00000451957	ENST00000451957		ChiTaRS3.1			AW894712	GSS	chr20	33531020	+	GSS	chr20	33530764	-
intron-3CDS	ENST00000519973	ENST00000435120		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000519973	ENST00000203630		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000519973	ENST00000542154		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000519973	ENST00000539187		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-intron	ENST00000519973	ENST00000564181		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000517923	ENST00000435120		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000517923	ENST00000203630		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000517923	ENST00000542154		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3CDS	ENST00000517923	ENST00000539187		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-intron	ENST00000517923	ENST00000564181		ChiTaRS3.1			AA978092	SLC25A37	chr8	23404494	-	MLF2	chr12	6861114	+
intron-3UTR	ENST00000418842	ENST00000418842		ChiTaRS3.1			AW582982	GCG	chr2	163000677	+	GCG	chr2	162999782	-
intron-intron	ENST00000418842	ENST00000375497		ChiTaRS3.1			AW582982	GCG	chr2	163000677	+	GCG	chr2	162999782	-
intron-3UTR	ENST00000375497	ENST00000418842		ChiTaRS3.1			AW582982	GCG	chr2	163000677	+	GCG	chr2	162999782	-
intron-intron	ENST00000375497	ENST00000375497		ChiTaRS3.1			AW582982	GCG	chr2	163000677	+	GCG	chr2	162999782	-
intron-3UTR	ENST00000493368	ENST00000263657		ChiTaRS3.1			CA414232	GRHPR	chr9	37432653	-	PNO1	chr2	68402413	-
intron-3UTR	ENST00000318158	ENST00000263657		ChiTaRS3.1			CA414232	GRHPR	chr9	37432653	-	PNO1	chr2	68402413	-
intron-3UTR	ENST00000607784	ENST00000263657		ChiTaRS3.1			CA414232	GRHPR	chr9	37432653	-	PNO1	chr2	68402413	-
intron-3CDS	ENST00000261497	ENST00000455600		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000261497	ENST00000468041		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-3CDS	ENST00000537526	ENST00000455600		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000537526	ENST00000468041		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-3CDS	ENST00000455117	ENST00000455600		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
intron-intron	ENST00000455117	ENST00000468041		ChiTaRS3.1			BF900662	USP22	chr17	20919165	+	RUSC2	chr9	35555682	+
Frame-shit	ENST00000417225	ENST00000417225		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
Frame-shit	ENST00000417225	ENST00000443527		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
5CDS-intron	ENST00000417225	ENST00000473199		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
Frame-shit	ENST00000443527	ENST00000417225		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
Frame-shit	ENST00000443527	ENST00000443527		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
5CDS-intron	ENST00000443527	ENST00000473199		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
intron-3CDS	ENST00000473199	ENST00000417225		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
intron-3CDS	ENST00000473199	ENST00000443527		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
intron-intron	ENST00000473199	ENST00000473199		ChiTaRS3.1			BI004402	CRY2	chr11	45893722	+	CRY2	chr11	45893769	-
intron-3UTR	ENST00000342983	ENST00000342983		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000342983	ENST00000370874		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000342983	ENST00000460462		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-3UTR	ENST00000370874	ENST00000342983		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-intron	ENST00000370874	ENST00000370874		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-intron	ENST00000370874	ENST00000460462		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-3UTR	ENST00000460462	ENST00000342983		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000460462	ENST00000370874		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000460462	ENST00000460462		ChiTaRS3.1			BQ314972	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-5UTR	ENST00000276449	ENST00000276449		ChiTaRS3.1			DA569262	STAR	chr8	38001809	-	STAR	chr8	38008365	-
intron-5UTR	ENST00000315843	ENST00000315843		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000315843	ENST00000464295		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000315843	ENST00000461057		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000464295	ENST00000315843		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000464295	ENST00000464295		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000464295	ENST00000461057		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000461057	ENST00000315843		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000461057	ENST00000464295		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-5UTR	ENST00000461057	ENST00000461057		ChiTaRS3.1			AB209362	GPR156	chr3	119963009	+	GPR156	chr3	119962955	-
intron-3CDS	ENST00000384974	ENST00000424459		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000514387		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000506184		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000454432		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000511209		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000264779		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000538707		ChiTaRS3.1			BC070132	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
3UTR-3CDS	ENST00000410026	ENST00000410026		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000410026	ENST00000409510		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000410026	ENST00000425611		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000410026		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000409510		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000425611		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000410026		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000409510		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000425611		ChiTaRS3.1			BU685412	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3UTR	ENST00000263398	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
3UTR-intron	ENST00000263398	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000526025	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526025	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000449691	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000449691	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000360158	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000360158	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000415148	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000415148	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000437706	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000437706	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000433354	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433354	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000428726	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000428726	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000526669	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000526669	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000433892	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000433892	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000278386	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000278386	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000434472	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000434472	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000352818	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000352818	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3UTR	ENST00000528922	ENST00000263398		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000526025		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000449691		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000360158		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000415148		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000437706		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000433354		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000428726		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000526669		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000433892		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000278386		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000434472		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000352818		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-intron	ENST00000528922	ENST00000528922		ChiTaRS3.1			AW376462	CD44	chr11	35252818	-	CD44	chr11	35252927	+
intron-3CDS	ENST00000375499	ENST00000375499		ChiTaRS3.1			BU608192	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-intron	ENST00000375499	ENST00000466613		ChiTaRS3.1			BU608192	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-3CDS	ENST00000466613	ENST00000375499		ChiTaRS3.1			BU608192	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-intron	ENST00000466613	ENST00000466613		ChiTaRS3.1			BU608192	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
5CDS-3UTR	ENST00000357849	ENST00000469172		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000265866		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000441000		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000354695		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000469172		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000265866		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000441000		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000354695		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000469172		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000265866		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000441000		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000354695		ChiTaRS3.1			BE176782	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-intron	ENST00000275428	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000275428	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000275428	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000275428	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000275428	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000275428	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000005374	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409144	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409390	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000598361	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000275428		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000005374		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000409144		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000409390		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000598361		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
intron-intron	ENST00000409436	ENST00000409436		ChiTaRS3.1			BF756422	GGCT	chr7	30540161	-	GGCT	chr7	30544184	+
3UTR-3CDS	ENST00000602240	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
In-frame	ENST00000204005	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
In-frame	ENST00000545697	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
In-frame	ENST00000308370	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
In-frame	ENST00000396819	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
In-frame	ENST00000243562	ENST00000321725		ChiTaRS3.1			BF872672	LTBP4	chr19	41125336	+	STAB1	chr3	52556687	+
intron-intron	ENST00000539563	ENST00000539563		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000539563	ENST00000490035		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000539563	ENST00000498645		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000490035	ENST00000539563		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000490035	ENST00000490035		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000490035	ENST00000498645		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000498645	ENST00000539563		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000498645	ENST00000490035		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000498645	ENST00000498645		ChiTaRS3.1			CV357692	LSAMP	chr3	115915126	+	LSAMP	chr3	115914871	-
intron-intron	ENST00000080059	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000080059	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000354334	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000552960	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000380610	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000427332	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000543418		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000392833		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000362010		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000392832		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000469007		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000494677		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000537559		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
intron-intron	ENST00000488927	ENST00000468233		ChiTaRS3.1			BX112372	HDAC7	chr12	48185196	-	VEPH1	chr3	156982467	-
5CDS-intron	ENST00000380394	ENST00000281038		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
5CDS-intron	ENST00000380394	ENST00000528850		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
intron-intron	ENST00000498815	ENST00000281038		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
intron-intron	ENST00000498815	ENST00000528850		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
5CDS-intron	ENST00000380384	ENST00000281038		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
5CDS-intron	ENST00000380384	ENST00000528850		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
5CDS-intron	ENST00000315377	ENST00000281038		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
5CDS-intron	ENST00000315377	ENST00000528850		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
intron-intron	ENST00000380381	ENST00000281038		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
intron-intron	ENST00000380381	ENST00000528850		ChiTaRS3.1			BQ378142	RPS6	chr9	19378367	-	NARS2	chr11	78277177	+
intron-intron	ENST00000396353	ENST00000593786		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396353	ENST00000374796		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396353	ENST00000359003		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396355	ENST00000593786		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396355	ENST00000374796		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396355	ENST00000359003		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396354	ENST00000593786		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396354	ENST00000374796		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000396354	ENST00000359003		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000342673	ENST00000593786		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000342673	ENST00000374796		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000342673	ENST00000359003		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000571896	ENST00000593786		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000571896	ENST00000374796		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-intron	ENST00000571896	ENST00000359003		ChiTaRS3.1			AA535712	NDE1	chr16	15797207	+	NCOA6	chr20	33303130	+
intron-3CDS	ENST00000286355	ENST00000317269		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000286355	ENST00000357606		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000286355	ENST00000317287		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000377928	ENST00000317269		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000377928	ENST00000357606		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000377928	ENST00000317287		ChiTaRS3.1			BQ345242	ADCY8	chr8	131890902	+	DNAJC14	chr12	56216430	-
intron-3CDS	ENST00000369244	ENST00000561069		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000369244	ENST00000558402		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000369244	ENST00000558330		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000369244	ENST00000411764		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000369244	ENST00000558259		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000229971	ENST00000561069		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000229971	ENST00000558402		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000229971	ENST00000558330		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000229971	ENST00000411764		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-3CDS	ENST00000229971	ENST00000558259		ChiTaRS3.1			BF885322	FBXL4	chr6	99347218	+	APBA2	chr15	29368266	+
intron-5UTR	ENST00000380456	ENST00000338415		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000380456	ENST00000537448		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000568628	ENST00000338415		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000568628	ENST00000537448		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000393423	ENST00000338415		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000393423	ENST00000537448		ChiTaRS3.1			BQ892962	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-intron	ENST00000291386	ENST00000400314		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000400310		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000449640		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000400309		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000400308		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000400304		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000291386	ENST00000423045		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000400314		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000400310		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000449640		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000400309		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000400308		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000400304		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000359060	ENST00000423045		ChiTaRS3.1			BF818292	SSU72	chr1	1477338	-	PCBP3	chr21	47352576	-
intron-intron	ENST00000270458	ENST00000376113		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000346226		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000352848		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000393041		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000348750		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000357970		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000259238		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000393040		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000351659		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000316724		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000409400		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000466111		ChiTaRS3.1			BI034622	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
5CDS-intron	ENST00000261168	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000519374		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000519911		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000265093		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000517669		ChiTaRS3.1			BE077162	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
intron-3CDS	ENST00000462138	ENST00000462138		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000462138	ENST00000423525		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000462138	ENST00000461139		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000462138	ENST00000423516		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000462138	ENST00000296289		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000423525	ENST00000462138		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000423525	ENST00000423525		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423525	ENST00000461139		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423525	ENST00000423516		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423525	ENST00000296289		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000461139	ENST00000462138		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000461139	ENST00000423525		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000461139	ENST00000461139		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000461139	ENST00000423516		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000461139	ENST00000296289		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000423516	ENST00000462138		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000423516	ENST00000423525		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423516	ENST00000461139		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423516	ENST00000423516		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000423516	ENST00000296289		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000296289	ENST00000462138		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3CDS	ENST00000296289	ENST00000423525		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000296289	ENST00000461139		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000296289	ENST00000423516		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-5UTR	ENST00000296289	ENST00000296289		ChiTaRS3.1			BG488822	TKT	chr3	53265462	+	TKT	chr3	53265422	-
intron-3UTR	ENST00000335508	ENST00000335508		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000335508	ENST00000462613		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000335508	ENST00000409915		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000335508	ENST00000414963		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000335508	ENST00000487698		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-3UTR	ENST00000462613	ENST00000335508		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000462613	ENST00000462613		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000462613	ENST00000409915		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000462613	ENST00000414963		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000462613	ENST00000487698		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-3UTR	ENST00000409915	ENST00000335508		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000409915	ENST00000462613		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000409915	ENST00000409915		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000409915	ENST00000414963		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000409915	ENST00000487698		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-3UTR	ENST00000414963	ENST00000335508		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000414963	ENST00000462613		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000414963	ENST00000409915		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000414963	ENST00000414963		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000414963	ENST00000487698		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-3UTR	ENST00000487698	ENST00000335508		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000487698	ENST00000462613		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000487698	ENST00000409915		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000487698	ENST00000414963		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000487698	ENST00000487698		ChiTaRS3.1			AI174532	SF3B1	chr2	198256763	+	SF3B1	chr2	198256790	-
intron-intron	ENST00000527706	ENST00000342228		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000527706	ENST00000520262		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000527706	ENST00000520179		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000527706	ENST00000523340		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000321322	ENST00000342228		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000321322	ENST00000520262		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000321322	ENST00000520179		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000321322	ENST00000523340		ChiTaRS3.1			CV322612	DSCAML1	chr11	117602656	-	SLC20A2	chr8	42312904	-
intron-intron	ENST00000254799	ENST00000252744		ChiTaRS3.1			BI061722	GRSF1	chr4	71686177	+	ZSWIM6	chr5	60759175	+
intron-intron	ENST00000439371	ENST00000252744		ChiTaRS3.1			BI061722	GRSF1	chr4	71686177	+	ZSWIM6	chr5	60759175	+
intron-intron	ENST00000502323	ENST00000252744		ChiTaRS3.1			BI061722	GRSF1	chr4	71686177	+	ZSWIM6	chr5	60759175	+
intron-intron	ENST00000545193	ENST00000252744		ChiTaRS3.1			BI061722	GRSF1	chr4	71686177	+	ZSWIM6	chr5	60759175	+
intron-intron	ENST00000508091	ENST00000252744		ChiTaRS3.1			BI061722	GRSF1	chr4	71686177	+	ZSWIM6	chr5	60759175	+
intron-intron	ENST00000327892	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000327892	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000435534	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000435534	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000330914	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000330914	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000396389	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000396389	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000396384	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000396384	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000421473	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000421473	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549614	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549614	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000413547	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000413547	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000419551	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000419551	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000454620	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000454620	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000422674	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000422674	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000548023	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000548023	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000435546	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000435546	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000420400	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000420400	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000453350	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000453350	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000419792	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000419792	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000547690	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000547690	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000436335	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000436335	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000425136	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000425136	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000444441	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000444441	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000422650	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000422650	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000547695	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000547695	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000454454	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000454454	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000412136	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000412136	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000446385	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000446385	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000383564	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000383564	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000551208	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000551208	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400531	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400531	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400534	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400534	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400530	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000400530	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000436628	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000436628	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549902	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549902	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000437490	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000437490	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000426754	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000426754	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000425102	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000425102	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000432462	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000432462	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549654	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
intron-intron	ENST00000549654	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000427480	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000427480	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000424734	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000424734	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000420618	ENST00000242505		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
3UTR-intron	ENST00000420618	ENST00000607940		ChiTaRS3.1			BG178522	TUBB	chr6	2024848	+	FAM149B1	chr10	74928409	+
5CDS-3UTR	ENST00000358506	ENST00000358506		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000358506	ENST00000296122		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000358506	ENST00000395366		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000296122	ENST00000358506		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000296122	ENST00000296122		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000296122	ENST00000395366		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000395366	ENST00000358506		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000395366	ENST00000296122		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
5CDS-3UTR	ENST00000395366	ENST00000395366		ChiTaRS3.1			BE170792	PPP1CB	chr2	29001864	-	PPP1CB	chr2	29022235	-
intron-intron	ENST00000512913	ENST00000476233		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000512913	ENST00000354667		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000512913	ENST00000356674		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000265073	ENST00000476233		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000265073	ENST00000354667		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000265073	ENST00000356674		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000515355	ENST00000476233		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000515355	ENST00000354667		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000515355	ENST00000356674		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000502897	ENST00000476233		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000502897	ENST00000354667		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000502897	ENST00000356674		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000504789	ENST00000476233		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000504789	ENST00000354667		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-intron	ENST00000504789	ENST00000356674		ChiTaRS3.1			AW373752	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237348	-
intron-3CDS	ENST00000297338	ENST00000297338		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000523986		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000517749		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000518055		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000297338	ENST00000523547		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000523986	ENST00000297338		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000523986		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000517749		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000518055		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523986	ENST00000523547		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000517749	ENST00000297338		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000523986		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000517749		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000518055		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000517749	ENST00000523547		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000518055	ENST00000297338		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000523986		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000517749		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000518055		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000518055	ENST00000523547		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-3CDS	ENST00000523547	ENST00000297338		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000523986		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000517749		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000518055		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000523547	ENST00000523547		ChiTaRS3.1			BI048052	RAD21	chr8	117859228	+	RAD21	chr8	117864799	-
intron-intron	ENST00000396402	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000396402	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000260433	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000260433	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000396404	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000396404	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000559878	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000559878	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000405913	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000405913	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000557858	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000557858	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000492852	ENST00000307078		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000492852	ENST00000375702		ChiTaRS3.1			BF997742	CYP19A1	chr15	51623521	-	AXIN2	chr17	63544686	-
intron-intron	ENST00000264674	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000264674	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000264674	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000392736	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000392736	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000392736	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000464456	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000464456	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000464456	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000472280	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000472280	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000472280	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000494292	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000494292	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000494292	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000468789	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000468789	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000468789	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000460814	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000460814	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000460814	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000433243	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000433243	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000433243	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000485957	ENST00000265062		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000485957	ENST00000482525		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000485957	ENST00000485280		ChiTaRS3.1			BQ312732	MECOM	chr3	168801448	+	RAB7A	chr3	128490635	-
intron-intron	ENST00000504734	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000504734	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000504734	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000415618	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000415618	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000415618	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000452673	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000452673	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000452673	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000247461	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000247461	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
3UTR-intron	ENST00000247461	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000512607	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000512607	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000512607	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000503126	ENST00000367265		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000503126	ENST00000367264		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-intron	ENST00000503126	ENST00000456180		ChiTaRS3.1			BG009982	CANX	chr5	179155948	-	KDM5B	chr1	202712323	-
intron-5UTR	ENST00000602404	ENST00000469100		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-3UTR	ENST00000602404	ENST00000373477		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-5UTR	ENST00000498737	ENST00000469100		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-3UTR	ENST00000498737	ENST00000373477		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-5UTR	ENST00000470753	ENST00000469100		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-3UTR	ENST00000470753	ENST00000373477		ChiTaRS3.1			BU174672	NDUFA6	chr22	42486671	+	YARS	chr1	33241387	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766252	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766252	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3UTR	ENST00000256951	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000256951	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000256951	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000256951	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000256951	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000256951	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-3UTR	ENST00000537612	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000537612	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000537612	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000537612	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000537612	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000537612	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-3UTR	ENST00000431267	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000431267	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000431267	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000431267	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000431267	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000431267	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-3UTR	ENST00000544053	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000544053	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000544053	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000544053	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000544053	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000544053	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-3UTR	ENST00000542289	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000542289	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000542289	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000542289	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000542289	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
3UTR-intron	ENST00000542289	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-3UTR	ENST00000396301	ENST00000256951		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000396301	ENST00000537612		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000396301	ENST00000431267		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000396301	ENST00000544053		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000396301	ENST00000542289		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000396301	ENST00000396301		ChiTaRS3.1			BE005032	EMP1	chr12	13368248	-	EMP1	chr12	13368718	-
intron-intron	ENST00000250784	ENST00000250784		ChiTaRS3.1			BF810102	RPS4Y1	chrY	2715654	+	RPS4Y1	chrY	2715518	-
intron-intron	ENST00000250784	ENST00000477725		ChiTaRS3.1			BF810102	RPS4Y1	chrY	2715654	+	RPS4Y1	chrY	2715518	-
intron-intron	ENST00000477725	ENST00000250784		ChiTaRS3.1			BF810102	RPS4Y1	chrY	2715654	+	RPS4Y1	chrY	2715518	-
intron-intron	ENST00000477725	ENST00000477725		ChiTaRS3.1			BF810102	RPS4Y1	chrY	2715654	+	RPS4Y1	chrY	2715518	-
5CDS-3UTR	ENST00000394054	ENST00000395042		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-3UTR	ENST00000394054	ENST00000332298		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-intron	ENST00000394054	ENST00000493165		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-3UTR	ENST00000326151	ENST00000395042		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-3UTR	ENST00000326151	ENST00000332298		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-intron	ENST00000326151	ENST00000493165		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-3UTR	ENST00000326172	ENST00000395042		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-3UTR	ENST00000326172	ENST00000332298		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
5CDS-intron	ENST00000326172	ENST00000493165		ChiTaRS3.1			BU963542	NFKBIZ	chr3	101572065	+	RGS19	chr20	62704588	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			BG952632	SRRM2	chr16	2812285	-	SRRM2	chr16	2812344	+
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BG952632	SRRM2	chr16	2812285	-	SRRM2	chr16	2812344	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BG952632	SRRM2	chr16	2812285	-	SRRM2	chr16	2812344	+
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BG952632	SRRM2	chr16	2812285	-	SRRM2	chr16	2812344	+
3UTR-3UTR	ENST00000261558	ENST00000261558		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
3UTR-intron	ENST00000261558	ENST00000431972		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
3UTR-intron	ENST00000261558	ENST00000556723		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-3UTR	ENST00000431972	ENST00000261558		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-intron	ENST00000431972	ENST00000431972		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-intron	ENST00000431972	ENST00000556723		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-3UTR	ENST00000556723	ENST00000261558		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-intron	ENST00000556723	ENST00000431972		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
intron-intron	ENST00000556723	ENST00000556723		ChiTaRS3.1			D61222	AP5M1	chr14	57756171	-	AP5M1	chr14	57756204	+
3UTR-3UTR	ENST00000344096	ENST00000344096		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000393555		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000537632		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000393555	ENST00000344096		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000393555		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000537632		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000537632	ENST00000344096		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000393555		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000537632		ChiTaRS3.1			C15802	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000242365	ENST00000242365		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000242365	ENST00000440172		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000242365	ENST00000422774		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000440172	ENST00000242365		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000440172	ENST00000440172		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000440172	ENST00000422774		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000422774	ENST00000242365		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000422774	ENST00000440172		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000422774	ENST00000422774		ChiTaRS3.1			BQ343712	KIAA1549	chr7	138648465	+	KIAA1549	chr7	138653385	-
intron-intron	ENST00000273221	ENST00000361682		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000403184		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000403710		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000407537		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000406520		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000449653		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000273221	ENST00000493893		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000361682		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000403184		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000403710		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000407537		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000406520		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000449653		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000473088	ENST00000493893		ChiTaRS3.1			BG259212	IQSEC1	chr3	12942535	+	COMT	chr22	19946506	-
intron-intron	ENST00000367265	ENST00000367265		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000367265	ENST00000367264		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000367265	ENST00000456180		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000367264	ENST00000367265		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000367264	ENST00000367264		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000367264	ENST00000456180		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000456180	ENST00000367265		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000456180	ENST00000367264		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-intron	ENST00000456180	ENST00000456180		ChiTaRS3.1			CV330182	KDM5B	chr1	202740413	+	KDM5B	chr1	202738858	+
intron-3UTR	ENST00000368094	ENST00000368094		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000368094	ENST00000361509		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000368094	ENST00000493195		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000361509	ENST00000368094		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000361509	ENST00000361509		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000361509	ENST00000493195		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000493195	ENST00000368094		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000493195	ENST00000361509		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000493195	ENST00000493195		ChiTaRS3.1			BQ355642	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
Frame-shit	ENST00000339362	ENST00000339362		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000261908		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000558964		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000339362	ENST00000560262		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000339362	ENST00000560352		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000339362		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000261908		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000558964		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000261908	ENST00000560262		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000261908	ENST00000560352		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000339362		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000261908		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000558964		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000558964	ENST00000560262		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000558964	ENST00000560352		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000339362		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000261908		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000558964		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
Frame-shit	ENST00000560262	ENST00000560262		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
5CDS-intron	ENST00000560262	ENST00000560352		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000339362		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000261908		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000558964		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-3CDS	ENST00000560352	ENST00000560262		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
3UTR-intron	ENST00000560352	ENST00000560352		ChiTaRS3.1			AW973832	NEO1	chr15	73528707	+	NEO1	chr15	73418823	-
intron-3CDS	ENST00000345330	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000351217	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000542234	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000562924	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000563691	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000545878	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000287226	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3CDS	ENST00000564551	ENST00000361566		ChiTaRS3.1			BM048392	NPTN	chr15	73866109	+	KRT19	chr17	39681503	-
intron-3UTR	ENST00000546530	ENST00000390645		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000546530	ENST00000339728		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000261729	ENST00000390645		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000261729	ENST00000339728		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000446861	ENST00000390645		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000446861	ENST00000339728		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000548055	ENST00000390645		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000548055	ENST00000339728		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000418411	ENST00000390645		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-3UTR	ENST00000418411	ENST00000339728		ChiTaRS3.1			AI918592	RASAL1	chr12	113537368	+	ARL4C	chr2	235403864	+
intron-intron	ENST00000379374	ENST00000280772		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000379374	ENST00000373827		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000379374	ENST00000355288		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000379374	ENST00000503366		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000379374	ENST00000510382		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000379374	ENST00000460468		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000280772		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000373827		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000355288		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000503366		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000510382		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000537599	ENST00000460468		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000280772		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000373827		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000355288		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000503366		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000510382		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000535894	ENST00000460468		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000280772		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000373827		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000355288		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000503366		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000510382		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000418858	ENST00000460468		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000280772		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000373827		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000355288		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000503366		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000510382		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000475778	ENST00000460468		ChiTaRS3.1			BF814582	PHEX	chrX	22100611	-	ANK3	chr10	62485009	-
intron-intron	ENST00000348697	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000348697	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000348697	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000348697	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000348697	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000402984	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000402984	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000402984	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000402984	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000402984	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000262722	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000262722	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000262722	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000262722	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000262722	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000327858	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000327858	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000327858	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000327858	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000327858	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000442170	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000442170	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000442170	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000442170	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000442170	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000340923	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000340923	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000340923	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000340923	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000340923	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000476366	ENST00000366919		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000476366	ENST00000392142		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000476366	ENST00000348824		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000476366	ENST00000366920		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000476366	ENST00000446500		ChiTaRS3.1			CV372922	FBLN1	chr22	45948280	-	MAP3K4	chr6	161498792	-
intron-intron	ENST00000438796	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000559624		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000382727		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000263791		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000560648		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000559311		ChiTaRS3.1			AW389992	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000357575	ENST00000357575		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000397778		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000409073		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000357575	ENST00000590381		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000357575	ENST00000590895		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000357575		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000397778		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000409073		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000397778	ENST00000590381		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000397778	ENST00000590895		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000357575		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000397778		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000409073		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000409073	ENST00000590381		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000409073	ENST00000590895		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000357575		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000397778		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000409073		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590381	ENST00000590381		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000590381	ENST00000590895		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000357575		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000397778		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000409073		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000590895	ENST00000590381		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-5UTR	ENST00000590895	ENST00000590895		ChiTaRS3.1			BF931712	PQLC1	chr18	77675518	+	PQLC1	chr18	77675846	-
intron-intron	ENST00000370532	ENST00000393446		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000265437		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000393451		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000393449		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000323984		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000432298		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000422922		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000487459		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000393443		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000393447		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000393444		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-intron	ENST00000370532	ENST00000465133		ChiTaRS3.1			AI133152	CDR1	chrX	139866000	-	ST7	chr7	116778593	+
intron-3CDS	ENST00000419071	ENST00000402506		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000402045		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000338732		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000222725		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000419071	ENST00000359574		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000402506		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000402045		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000338732		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000222725		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000268835	ENST00000359574		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000402506		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000402045		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000338732		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000222725		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000536323	ENST00000359574		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000402506		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000402045		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000338732		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000222725		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000542013	ENST00000359574		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000402506		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000402045		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000338732		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000222725		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
intron-3CDS	ENST00000575337	ENST00000359574		ChiTaRS3.1			BE772582	PRPSAP2	chr17	18768735	-	LFNG	chr7	2565187	+
3UTR-3UTR	ENST00000329565	ENST00000329565		ChiTaRS3.1			AA448622	SNN	chr16	11772492	+	SNN	chr16	11772052	+
intron-intron	ENST00000439817	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000439817	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000439817	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000439817	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000439817	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000439817	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000361464	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000361464	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000361464	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000361464	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000361464	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000361464	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000482611	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000482611	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000482611	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000482611	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000482611	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000482611	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000357797	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000357797	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000357797	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000357797	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000357797	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000357797	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000370094	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000370094	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000370094	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000370094	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000370094	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000370094	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000419011	ENST00000439817		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000419011	ENST00000361464		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000419011	ENST00000482611		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000419011	ENST00000357797		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-3UTR	ENST00000419011	ENST00000370094		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000419011	ENST00000419011		ChiTaRS3.1			BQ337632	MGEA5	chr10	103557507	+	MGEA5	chr10	103557435	-
intron-intron	ENST00000291568	ENST00000533608		ChiTaRS3.1			AA554222	CSTB	chr21	45193977	+	EXT2	chr11	44200638	-
intron-intron	ENST00000291568	ENST00000358681		ChiTaRS3.1			AA554222	CSTB	chr21	45193977	+	EXT2	chr11	44200638	-
intron-intron	ENST00000291568	ENST00000395673		ChiTaRS3.1			AA554222	CSTB	chr21	45193977	+	EXT2	chr11	44200638	-
intron-intron	ENST00000291568	ENST00000343631		ChiTaRS3.1			AA554222	CSTB	chr21	45193977	+	EXT2	chr11	44200638	-
intron-intron	ENST00000291568	ENST00000529186		ChiTaRS3.1			AA554222	CSTB	chr21	45193977	+	EXT2	chr11	44200638	-
5CDS-intron	ENST00000355078	ENST00000381196		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000360074		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000537002		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000397617		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000358503		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000397611		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000355233		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000356435		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000540109		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000486161		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000397606		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000463477		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000355078	ENST00000471274		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000381196		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000360074		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000537002		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000397617		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000358503		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000397611		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000355233		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000356435		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000540109		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000486161		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000397606		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000463477		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000302763	ENST00000471274		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000381196		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000360074		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000537002		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000397617		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000358503		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000397611		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000355233		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000356435		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000540109		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000486161		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000397606		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000463477		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000518825	ENST00000471274		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000381196		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000360074		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000537002		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000397617		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000358503		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000397611		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000355233		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000356435		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000540109		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000486161		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000397606		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000463477		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-intron	ENST00000520400	ENST00000471274		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000381196		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000360074		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000537002		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000397617		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000358503		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000397611		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000355233		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000356435		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000540109		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000486161		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000397606		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000463477		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
5CDS-intron	ENST00000540387	ENST00000471274		ChiTaRS3.1			BE715152	CTNNA1	chr5	138266601	-	PTPRD	chr9	8487091	-
intron-3CDS	ENST00000272139	ENST00000565886		ChiTaRS3.1			CR740292	C1orf35	chr1	228290204	-	TGFBR3L	chr19	7982988	+
intron-3UTR	ENST00000272139	ENST00000564348		ChiTaRS3.1			CR740292	C1orf35	chr1	228290204	-	TGFBR3L	chr19	7982988	+
intron-3CDS	ENST00000472617	ENST00000565886		ChiTaRS3.1			CR740292	C1orf35	chr1	228290204	-	TGFBR3L	chr19	7982988	+
intron-3UTR	ENST00000472617	ENST00000564348		ChiTaRS3.1			CR740292	C1orf35	chr1	228290204	-	TGFBR3L	chr19	7982988	+
intron-intron	ENST00000267339	ENST00000512055		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000267339	ENST00000429747		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000267339	ENST00000512332		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000267339	ENST00000511604		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000267339	ENST00000502818		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000267339	ENST00000503204		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000512055		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000429747		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000512332		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000511604		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000502818		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000375758	ENST00000503204		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000512055		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000429747		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000512332		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000511604		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000502818		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000489973	ENST00000503204		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000512055		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000429747		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000512332		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000511604		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000502818		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-intron	ENST00000310847	ENST00000503204		ChiTaRS3.1			BE005082	ANKRD10	chr13	111535715	-	CPNE4	chr3	131804259	+
intron-3UTR	ENST00000193403	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000193403	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000193403	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000193403	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000394419	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000394419	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000394419	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000394419	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000438964	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000438964	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000438964	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000438964	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000376839	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000376839	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000376839	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000376839	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000538545	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000538545	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000538545	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000538545	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000554508	ENST00000394906		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000554508	ENST00000394908		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-3UTR	ENST00000554508	ENST00000585169		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
intron-5UTR	ENST00000554508	ENST00000577789		ChiTaRS3.1			BF763712	ACTN1	chr14	69366482	-	FLOT2	chr17	27207403	-
5CDS-5UTR	ENST00000304842	ENST00000304842		ChiTaRS3.1			AA453212	TPST1	chr7	65705943	+	TPST1	chr7	65670470	+
5CDS-3UTR	ENST00000304842	ENST00000480281		ChiTaRS3.1			AA453212	TPST1	chr7	65705943	+	TPST1	chr7	65670470	+
intron-5UTR	ENST00000480281	ENST00000304842		ChiTaRS3.1			AA453212	TPST1	chr7	65705943	+	TPST1	chr7	65670470	+
intron-3UTR	ENST00000480281	ENST00000480281		ChiTaRS3.1			AA453212	TPST1	chr7	65705943	+	TPST1	chr7	65670470	+
intron-3CDS	ENST00000311669	ENST00000311669		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000311669	ENST00000456471		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000311669	ENST00000567733		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000456471	ENST00000311669		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000456471	ENST00000456471		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000456471	ENST00000567733		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000567733	ENST00000311669		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-intron	ENST00000567733	ENST00000456471		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-5UTR	ENST00000567733	ENST00000567733		ChiTaRS3.1			BQ668982	ADPGK	chr15	73045110	-	ADPGK	chr15	73067439	-
intron-3CDS	ENST00000327367	ENST00000361417		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000327367	ENST00000356063		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000327367	ENST00000534672		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000327367	ENST00000527898		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000327367	ENST00000524713		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000559092	ENST00000361417		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000559092	ENST00000356063		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000559092	ENST00000534672		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000559092	ENST00000527898		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000559092	ENST00000524713		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000540846	ENST00000361417		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000540846	ENST00000356063		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000540846	ENST00000534672		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000540846	ENST00000527898		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000540846	ENST00000524713		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000439724	ENST00000361417		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000439724	ENST00000356063		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000439724	ENST00000534672		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000439724	ENST00000527898		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000439724	ENST00000524713		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000537194	ENST00000361417		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3CDS	ENST00000537194	ENST00000356063		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000537194	ENST00000534672		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000537194	ENST00000527898		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
intron-3UTR	ENST00000537194	ENST00000524713		ChiTaRS3.1			BE718772	SMAD3	chr15	67472353	-	PHLDB1	chr11	118518674	-
3UTR-3CDS	ENST00000373610	ENST00000373610		ChiTaRS3.1			BF850082	TXLNA	chr1	32663261	+	TXLNA	chr1	32650131	+
3UTR-3CDS	ENST00000373610	ENST00000373609		ChiTaRS3.1			BF850082	TXLNA	chr1	32663261	+	TXLNA	chr1	32650131	+
3UTR-3CDS	ENST00000373609	ENST00000373610		ChiTaRS3.1			BF850082	TXLNA	chr1	32663261	+	TXLNA	chr1	32650131	+
3UTR-3CDS	ENST00000373609	ENST00000373609		ChiTaRS3.1			BF850082	TXLNA	chr1	32663261	+	TXLNA	chr1	32650131	+
intron-3CDS	ENST00000607772	ENST00000452271		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-intron	ENST00000607772	ENST00000518157		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-3CDS	ENST00000479339	ENST00000452271		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-intron	ENST00000479339	ENST00000518157		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-3CDS	ENST00000433165	ENST00000452271		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-intron	ENST00000433165	ENST00000518157		ChiTaRS3.1			BF827872	CNKSR3	chr6	154799795	+	SBSN	chr19	36018209	+
intron-intron	ENST00000318602	ENST00000441293		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000314728		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000347697		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000395618		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000575595		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000395620		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000395626		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000318602	ENST00000571254		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000441293		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000314728		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000347697		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000395618		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000575595		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000395620		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000395626		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-intron	ENST00000542567	ENST00000571254		ChiTaRS3.1			BF849872	A2M	chr12	9243885	-	EPN2	chr17	19184805	+
intron-3CDS	ENST00000316878	ENST00000360319		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-3CDS	ENST00000316878	ENST00000422373		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-3CDS	ENST00000316878	ENST00000369850		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000316878	ENST00000369856		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000316878	ENST00000344736		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000316878	ENST00000498491		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-3CDS	ENST00000501501	ENST00000360319		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-3CDS	ENST00000501501	ENST00000422373		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-3CDS	ENST00000501501	ENST00000369850		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000501501	ENST00000369856		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000501501	ENST00000344736		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000501501	ENST00000498491		ChiTaRS3.1			BF874102	PPP1R9B	chr17	48218471	+	FLNA	chrX	153592716	-
intron-intron	ENST00000313386	ENST00000313386		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000313386	ENST00000515098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000313386	ENST00000542098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000515098	ENST00000313386		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000515098	ENST00000515098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000515098	ENST00000542098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000542098	ENST00000313386		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000542098	ENST00000515098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
intron-intron	ENST00000542098	ENST00000542098		ChiTaRS3.1			AA397442	RMND5B	chr5	177560451	+	RMND5B	chr5	177559389	+
3UTR-intron	ENST00000330029	ENST00000458477		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000228307		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000424649		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000397506		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000536957		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000267257		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000330029	ENST00000538144		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000458477		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000228307		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000424649		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000397506		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000536957		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000267257		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
3UTR-intron	ENST00000401406	ENST00000538144		ChiTaRS3.1			AW371242	UQCR10	chr22	30165810	-	PXN	chr12	120694339	+
intron-intron	ENST00000337959	ENST00000438284		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000337959	ENST00000431010		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000337959	ENST00000397056		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000263246	ENST00000438284		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000263246	ENST00000431010		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000263246	ENST00000397056		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000407585	ENST00000438284		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000407585	ENST00000431010		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000407585	ENST00000397056		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000403744	ENST00000438284		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000403744	ENST00000431010		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000403744	ENST00000397056		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000402229	ENST00000438284		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000402229	ENST00000431010		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000402229	ENST00000397056		ChiTaRS3.1			BF850392	PACSIN2	chr22	43356432	-	HRH1	chr3	11208482	+
intron-intron	ENST00000369528	ENST00000369528		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000369528	ENST00000060969		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000369528	ENST00000506320		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000369528		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000060969		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000506320		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000369528		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000060969		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000506320		ChiTaRS3.1			BQ187652	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
3UTR-3CDS	ENST00000010404	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000010404	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000010404	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000010404	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000010404	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000010404	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000010404	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396210	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396210	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396210	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396210	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396210	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396210	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396210	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000535309	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000535309	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000535309	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000535309	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000535309	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000535309	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000535309	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000540056	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000540056	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000540056	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000540056	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000540056	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000540056	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000540056	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396209	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396209	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396209	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396209	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396209	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396209	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396209	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396207	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-3CDS	ENST00000396207	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396207	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396207	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396207	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396207	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
3UTR-intron	ENST00000396207	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000359720	ENST00000010404		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3CDS	ENST00000359720	ENST00000396210		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000359720	ENST00000535309		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000359720	ENST00000540056		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000359720	ENST00000396209		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000359720	ENST00000396207		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-intron	ENST00000359720	ENST00000359720		ChiTaRS3.1			BM983802	MGST1	chr12	16517058	-	MGST1	chr12	16516731	+
intron-3UTR	ENST00000368533	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368533	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368533	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368533	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000469717	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000469717	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000469717	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000330188	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000330188	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000330188	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000341485	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341485	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000341485	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000341372	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000341372	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000341372	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000328159	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000328159	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000328159	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000271850	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000271850	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000271850	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000302206	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000302206	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000302206	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368531	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368531	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368531	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000323144	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000323144	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000323144	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000280551		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000379735		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000429811		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-5UTR	ENST00000368530	ENST00000505134		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-3UTR	ENST00000368530	ENST00000511481		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
intron-intron	ENST00000368530	ENST00000419654		ChiTaRS3.1			AW853022	TPM3	chr1	154158571	-	SEC24D	chr4	119644235	-
5CDS-5UTR	ENST00000006777	ENST00000287600		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
5CDS-5UTR	ENST00000006777	ENST00000409772		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
5CDS-5UTR	ENST00000006777	ENST00000477748		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
5UTR-5UTR	ENST00000318622	ENST00000287600		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
5UTR-5UTR	ENST00000318622	ENST00000409772		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
5UTR-5UTR	ENST00000318622	ENST00000477748		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000468304	ENST00000287600		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000468304	ENST00000409772		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000468304	ENST00000477748		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000428119	ENST00000287600		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000428119	ENST00000409772		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-5UTR	ENST00000428119	ENST00000477748		ChiTaRS3.1			BC004322	RHBDD2	chr7	75511217	-	PDE6D	chr2	232645986	-
intron-intron	ENST00000415654	ENST00000608442		ChiTaRS3.1			BF823052	NPIPB5	chr16	22531028	-	AFAP1-AS1	chr4	7772246	+
intron-intron	ENST00000424340	ENST00000608442		ChiTaRS3.1			BF823052	NPIPB5	chr16	22531028	-	AFAP1-AS1	chr4	7772246	+
intron-intron	ENST00000517539	ENST00000608442		ChiTaRS3.1			BF823052	NPIPB5	chr16	22531028	-	AFAP1-AS1	chr4	7772246	+
intron-3CDS	ENST00000301071	ENST00000244227		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000301071	ENST00000409116		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000301071	ENST00000488986		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000295766	ENST00000244227		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000295766	ENST00000409116		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000295766	ENST00000488986		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000550767	ENST00000244227		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000550767	ENST00000409116		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000550767	ENST00000488986		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000546918	ENST00000244227		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3CDS	ENST00000546918	ENST00000409116		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-3UTR	ENST00000546918	ENST00000488986		ChiTaRS3.1			AI199092	TUBA1A	chr12	49578816	+	SNRNP27	chr2	70124540	-
intron-intron	ENST00000264731	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000264731	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000264731	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000264731	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000264731	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000264731	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000382063	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000382063	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000382063	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000382063	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000382063	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000382063	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-intron	ENST00000418709	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000418709	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000418709	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000418709	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-intron	ENST00000418709	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000418709	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000320472	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000320472	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000320472	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000320472	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000320472	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000320472	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392460	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392460	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392460	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392460	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392460	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392460	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000440651	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000440651	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000440651	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000440651	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000440651	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000440651	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000354600	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000354600	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000354600	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000354600	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000354600	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000354600	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-intron	ENST00000437221	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000437221	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000437221	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000437221	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-intron	ENST00000437221	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
3UTR-3UTR	ENST00000437221	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392463	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392463	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392463	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392463	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392463	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392463	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392461	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392461	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392461	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392461	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000392461	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000392461	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000456148	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000456148	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000456148	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000456148	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000456148	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000456148	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000449992	ENST00000535044		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000449992	ENST00000539696		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000449992	ENST00000228510		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000449992	ENST00000392727		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-intron	ENST00000449992	ENST00000539575		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000449992	ENST00000541384		ChiTaRS3.1			BG698692	TP63	chr3	189598181	+	MVK	chr12	110034441	+
intron-3UTR	ENST00000274376	ENST00000474267		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000274376	ENST00000264634		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000274376	ENST00000493406		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000274376	ENST00000497027		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000456692	ENST00000474267		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000456692	ENST00000264634		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000456692	ENST00000493406		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000456692	ENST00000497027		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000512763	ENST00000474267		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000512763	ENST00000264634		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000512763	ENST00000493406		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000512763	ENST00000497027		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000506290	ENST00000474267		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000506290	ENST00000264634		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000506290	ENST00000493406		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-intron	ENST00000506290	ENST00000497027		ChiTaRS3.1			BG434742	RASA1	chr5	86632893	+	WNT5A	chr3	55499868	-
intron-3UTR	ENST00000394945	ENST00000368069		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-3UTR	ENST00000394945	ENST00000241704		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-3UTR	ENST00000282223	ENST00000368069		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-3UTR	ENST00000282223	ENST00000241704		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-3UTR	ENST00000509978	ENST00000368069		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-3UTR	ENST00000509978	ENST00000241704		ChiTaRS3.1			BF832762	SPOCK1	chr5	136311531	+	COPA	chr1	160259908	+
intron-intron	ENST00000589651	ENST00000323116		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000589651	ENST00000493826		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000589651	ENST00000482794		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000270233	ENST00000323116		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000270233	ENST00000493826		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000270233	ENST00000482794		ChiTaRS3.1			BE712932	BCAM	chr19	45321779	-	ATP11B	chr3	182512382	-
intron-intron	ENST00000356698	ENST00000217515		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000356698	ENST00000585497		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000356698	ENST00000590954		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000356698	ENST00000540155		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000368317	ENST00000217515		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000368317	ENST00000585497		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000368317	ENST00000590954		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000368317	ENST00000540155		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000485757	ENST00000217515		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000485757	ENST00000585497		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000485757	ENST00000590954		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
intron-intron	ENST00000485757	ENST00000540155		ChiTaRS3.1			BE706582	RSPO3	chr6	127079239	-	TXNL1	chr18	54300194	-
In-frame	ENST00000319715	ENST00000308488		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000319715	ENST00000360355		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
Frame-shit	ENST00000319715	ENST00000480887		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
5CDS-intron	ENST00000319715	ENST00000530604		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
intron-3CDS	ENST00000452655	ENST00000308488		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
intron-3CDS	ENST00000452655	ENST00000360355		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
intron-3CDS	ENST00000452655	ENST00000480887		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
intron-intron	ENST00000452655	ENST00000530604		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000381039	ENST00000308488		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000381039	ENST00000360355		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
Frame-shit	ENST00000381039	ENST00000480887		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
5CDS-intron	ENST00000381039	ENST00000530604		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000348022	ENST00000308488		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000348022	ENST00000360355		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
Frame-shit	ENST00000348022	ENST00000480887		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
5CDS-intron	ENST00000348022	ENST00000530604		ChiTaRS3.1			AW887342	RBBP6	chr16	24583738	+	RSF1	chr11	77411870	-
In-frame	ENST00000382518	ENST00000382518		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
In-frame	ENST00000382518	ENST00000009180		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
In-frame	ENST00000382518	ENST00000382515		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
5CDS-3UTR	ENST00000382518	ENST00000481267		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
In-frame	ENST00000009180	ENST00000382518		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
In-frame	ENST00000009180	ENST00000009180		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
In-frame	ENST00000009180	ENST00000382515		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
5CDS-3UTR	ENST00000009180	ENST00000481267		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000382515	ENST00000382518		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000382515	ENST00000009180		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000382515	ENST00000382515		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3UTR	ENST00000382515	ENST00000481267		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000481267	ENST00000382518		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000481267	ENST00000009180		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3CDS	ENST00000481267	ENST00000382515		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-3UTR	ENST00000481267	ENST00000481267		ChiTaRS3.1			AW993802	CD9	chr12	6309683	-	CD9	chr12	6342592	+
intron-intron	ENST00000592273	ENST00000402102		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000592273	ENST00000377254		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000592273	ENST00000358591		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000592273	ENST00000449349		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000592273	ENST00000343544		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-5UTR	ENST00000592273	ENST00000324166		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000592273	ENST00000496844		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000402102		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000377254		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000358591		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000449349		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000343544		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-5UTR	ENST00000242784	ENST00000324166		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000242784	ENST00000496844		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000402102		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000377254		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000358591		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000449349		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000343544		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-5UTR	ENST00000588213	ENST00000324166		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
intron-intron	ENST00000588213	ENST00000496844		ChiTaRS3.1			BE172782	C19orf43	chr19	12844801	-	THNSL2	chr2	88472569	+
In-frame	ENST00000358823	ENST00000265594		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
In-frame	ENST00000358823	ENST00000492597		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000358823	ENST00000539926		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000358823	ENST00000489909		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
In-frame	ENST00000413307	ENST00000265594		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
In-frame	ENST00000413307	ENST00000492597		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000413307	ENST00000539926		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000413307	ENST00000489909		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
In-frame	ENST00000236925	ENST00000265594		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
In-frame	ENST00000236925	ENST00000492597		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000236925	ENST00000539926		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
5CDS-intron	ENST00000236925	ENST00000489909		ChiTaRS3.1			AW379082	CAMSAP2	chr1	200776570	+	MCCC1	chr3	182733326	-
intron-intron	ENST00000367142	ENST00000535572		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000537687		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000315939		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000447667		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000530271		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000540360		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000340908		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000574564		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000535572		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000537687		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000315939		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000447667		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000530271		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000540360		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000340908		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000574564		ChiTaRS3.1			BF057202	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-3CDS	ENST00000302550	ENST00000253408		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000302550	ENST00000588735		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000302550	ENST00000435360		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000302550	ENST00000586793		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-5UTR	ENST00000302550	ENST00000591327		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-3CDS	ENST00000263831	ENST00000253408		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000263831	ENST00000588735		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000263831	ENST00000435360		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000263831	ENST00000586793		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-5UTR	ENST00000263831	ENST00000591327		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-3CDS	ENST00000484738	ENST00000253408		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000484738	ENST00000588735		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000484738	ENST00000435360		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000484738	ENST00000586793		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-5UTR	ENST00000484738	ENST00000591327		ChiTaRS3.1			CV425882	DESI2	chr22	41997667	+	GFAP	chr17	42992517	-
intron-intron	ENST00000403565	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000403565	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000403565	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000403565	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000403565	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000313237	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000313237	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000313237	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000313237	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000313237	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000396103	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000396103	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000396103	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000396103	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000396103	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000404079	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000404079	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000404079	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000404079	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000404079	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000447824	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000447824	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000447824	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000447824	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000447824	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000462631	ENST00000268712		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000462631	ENST00000395851		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000462631	ENST00000395857		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000462631	ENST00000395848		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-intron	ENST00000462631	ENST00000583226		ChiTaRS3.1			BF961392	PHF21B	chr22	45280646	-	NCOR1	chr17	15945890	+
intron-3UTR	ENST00000409792	ENST00000334047		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-3UTR	ENST00000409792	ENST00000370207		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-intron	ENST00000409792	ENST00000480356		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-3UTR	ENST00000492397	ENST00000334047		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-3UTR	ENST00000492397	ENST00000370207		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-intron	ENST00000492397	ENST00000480356		ChiTaRS3.1			C02742	SETD2	chr3	47118876	-	F3	chr1	94995361	-
intron-intron	ENST00000382582	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000382582	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000382582	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000382582	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000382582	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000382582	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000355994	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000355994	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000355994	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000355994	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000355994	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000355994	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397875	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397875	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397875	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397875	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397875	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397875	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397866	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397866	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397866	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397866	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397866	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397866	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397865	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397865	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397865	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397865	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397865	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397865	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000527041	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000527041	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000527041	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000527041	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000527041	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000527041	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000359645	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000359645	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000359645	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000359645	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000359645	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000359645	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000528160	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000528160	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000528160	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000528160	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000528160	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000528160	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397869	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397869	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397869	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397869	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397869	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397869	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000354542	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000354542	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000354542	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000354542	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000354542	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000354542	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000526111	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000526111	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000526111	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000526111	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000526111	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000526111	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000580402	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000580402	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000580402	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000580402	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000580402	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000580402	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000579129	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000579129	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000579129	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000579129	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000579129	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000579129	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000578193	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000578193	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000578193	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000578193	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000578193	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000578193	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397863	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397863	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397863	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397863	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397863	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397863	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397860	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397860	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397860	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397860	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000397860	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000397860	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000487778	ENST00000367201		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000487778	ENST00000367202		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000487778	ENST00000367199		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000487778	ENST00000367198		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000487778	ENST00000367197		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-5UTR	ENST00000487778	ENST00000477125		ChiTaRS3.1			BF933482	MBP	chr18	74691618	+	ETNK2	chr1	204110703	-
intron-intron	ENST00000497424	ENST00000054666		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000497424	ENST00000470357		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000316562	ENST00000054666		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000316562	ENST00000470357		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000610179	ENST00000054666		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000610179	ENST00000470357		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000464452	ENST00000054666		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-intron	ENST00000464452	ENST00000470357		ChiTaRS3.1			BF896192	PANK2	chr20	3870763	+	VAMP3	chr1	7839660	+
intron-3CDS	ENST00000404767	ENST00000404767		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-3CDS	ENST00000404767	ENST00000389470		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-intron	ENST00000404767	ENST00000493531		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-3CDS	ENST00000389470	ENST00000404767		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-3CDS	ENST00000389470	ENST00000389470		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-intron	ENST00000389470	ENST00000493531		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-3CDS	ENST00000493531	ENST00000404767		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-3CDS	ENST00000493531	ENST00000389470		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
intron-intron	ENST00000493531	ENST00000493531		ChiTaRS3.1			BF377232	INTS1	chr7	1538063	-	INTS1	chr7	1538450	-
In-frame	ENST00000360909	ENST00000360909		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
In-frame	ENST00000360909	ENST00000351081		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
In-frame	ENST00000360909	ENST00000395125		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-intron	ENST00000360909	ENST00000556135		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-3UTR	ENST00000360909	ENST00000553966		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
In-frame	ENST00000351081	ENST00000360909		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
In-frame	ENST00000351081	ENST00000351081		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
In-frame	ENST00000351081	ENST00000395125		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-intron	ENST00000351081	ENST00000556135		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-3UTR	ENST00000351081	ENST00000553966		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
Frame-shit	ENST00000395125	ENST00000360909		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
Frame-shit	ENST00000395125	ENST00000351081		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
Frame-shit	ENST00000395125	ENST00000395125		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-intron	ENST00000395125	ENST00000556135		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
5CDS-3UTR	ENST00000395125	ENST00000553966		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-3CDS	ENST00000556135	ENST00000360909		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-3CDS	ENST00000556135	ENST00000351081		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-3CDS	ENST00000556135	ENST00000395125		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-intron	ENST00000556135	ENST00000556135		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-3UTR	ENST00000556135	ENST00000553966		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
3UTR-3CDS	ENST00000553966	ENST00000360909		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
3UTR-3CDS	ENST00000553966	ENST00000351081		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
3UTR-3CDS	ENST00000553966	ENST00000395125		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
3UTR-intron	ENST00000553966	ENST00000556135		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
3UTR-3UTR	ENST00000553966	ENST00000553966		ChiTaRS3.1			BG944832	DAAM1	chr14	59835533	+	DAAM1	chr14	59834192	+
intron-intron	ENST00000397063	ENST00000397063		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397063	ENST00000397062		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397063	ENST00000446151		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397063	ENST00000464747		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397062	ENST00000397063		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397062	ENST00000397062		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397062	ENST00000446151		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397062	ENST00000464747		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000446151	ENST00000397063		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000446151	ENST00000397062		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000446151	ENST00000446151		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000446151	ENST00000464747		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000464747	ENST00000397063		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000464747	ENST00000397062		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000464747	ENST00000446151		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000464747	ENST00000464747		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000423513	ENST00000397063		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000423513	ENST00000397062		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000423513	ENST00000446151		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000423513	ENST00000464747		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			AK128852	NFE2L2	chr2	178107105	-	NFE2L2	chr2	178107880	-
intron-intron	ENST00000393158	ENST00000393158		ChiTaRS3.1			AA938152	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000393158	ENST00000302251		ChiTaRS3.1			AA938152	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000393158		ChiTaRS3.1			AA938152	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000302251	ENST00000302251		ChiTaRS3.1			AA938152	PDGFD	chr11	103961160	+	PDGFD	chr11	103958162	+
intron-intron	ENST00000483074	ENST00000483074		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000483074	ENST00000343788		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000483074	ENST00000535397		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000483074	ENST00000310528		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000343788	ENST00000483074		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000343788	ENST00000343788		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000343788	ENST00000535397		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000343788	ENST00000310528		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000535397	ENST00000483074		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000535397	ENST00000343788		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000535397	ENST00000535397		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000535397	ENST00000310528		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000310528	ENST00000483074		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000310528	ENST00000343788		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000310528	ENST00000535397		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
intron-intron	ENST00000310528	ENST00000310528		ChiTaRS3.1			AW838402	SUGT1	chr13	53260911	+	SUGT1	chr13	53260332	+
3UTR-3UTR	ENST00000400000	ENST00000400000		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
3UTR-intron	ENST00000400000	ENST00000340541		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
3UTR-intron	ENST00000400000	ENST00000584796		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
3UTR-3UTR	ENST00000340541	ENST00000400000		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
3UTR-intron	ENST00000340541	ENST00000340541		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
3UTR-intron	ENST00000340541	ENST00000584796		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
intron-3UTR	ENST00000584796	ENST00000400000		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
intron-intron	ENST00000584796	ENST00000340541		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
intron-intron	ENST00000584796	ENST00000584796		ChiTaRS3.1			BF094402	VAPA	chr18	9954310	-	VAPA	chr18	9954370	+
5CDS-intron	ENST00000420083	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000420083	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000420083	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000420083	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000420083	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000449870	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000449870	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000449870	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000449870	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000318511	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000318511	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000318511	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000318511	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000407004	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000407004	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000407004	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000407004	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000589998	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000589998	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000589998	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000589998	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000250241	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000250241	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000250241	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000250241	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000592763	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000592763	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000592763	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000592763	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000588657	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000588657	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000588657	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000588657	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000590261	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000590261	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-intron	ENST00000590261	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
5CDS-3UTR	ENST00000590261	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000420083		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-3UTR	ENST00000586544	ENST00000449870		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-3UTR	ENST00000586544	ENST00000318511		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000407004		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000589998		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000250241		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000592763		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000588657		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000586544	ENST00000590261		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-3UTR	ENST00000586544	ENST00000586544		ChiTaRS3.1			CA335912	ILF3	chr19	10793219	-	ILF3	chr19	10802777	+
intron-intron	ENST00000379153	ENST00000379153		ChiTaRS3.1			AA814662	CD83	chr6	14127492	-	CD83	chr6	14130667	-
intron-3CDS	ENST00000358716	ENST00000288235		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-5UTR	ENST00000358716	ENST00000558814		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-3CDS	ENST00000382422	ENST00000288235		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-5UTR	ENST00000382422	ENST00000558814		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-3CDS	ENST00000360310	ENST00000288235		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-5UTR	ENST00000360310	ENST00000558814		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-3CDS	ENST00000553853	ENST00000288235		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-5UTR	ENST00000553853	ENST00000558814		ChiTaRS3.1			BE005282	BAZ1A	chr14	35234114	-	MYO1E	chr15	59515304	+
intron-intron	ENST00000534859	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000534859	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000534859	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000534859	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000534859	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000534859	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000399639	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000422431	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000537238	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367019	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000472886	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000271745	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000360839		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000297183		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000394723		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000394722		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000462121		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000367015	ENST00000544120		ChiTaRS3.1			BE148552	SYT14	chr1	210257196	-	ANKHD1	chr5	139894530	-
intron-intron	ENST00000588757	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000588757	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000420359	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000449624	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000421097	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000590958	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000588757		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000420359		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000449624		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000421097		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000590958		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-intron	ENST00000393818	ENST00000393818		ChiTaRS3.1			BQ212022	COASY	chr17	40716721	-	COASY	chr17	40716816	+
intron-3UTR	ENST00000316509	ENST00000316509		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000316509	ENST00000404970		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000316509	ENST00000488857		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000316509	ENST00000481878		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-3UTR	ENST00000404970	ENST00000316509		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000404970	ENST00000404970		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000404970	ENST00000488857		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000404970	ENST00000481878		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-3UTR	ENST00000488857	ENST00000316509		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000488857	ENST00000404970		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000488857	ENST00000488857		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000488857	ENST00000481878		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-3UTR	ENST00000481878	ENST00000316509		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000481878	ENST00000404970		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000481878	ENST00000488857		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
intron-intron	ENST00000481878	ENST00000481878		ChiTaRS3.1			BE219072	VAMP2	chr17	8063184	+	VAMP2	chr17	8063054	-
5CDS-intron	ENST00000217909	ENST00000217909		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
5CDS-intron	ENST00000217909	ENST00000336249		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
5CDS-3UTR	ENST00000217909	ENST00000488158		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
5CDS-intron	ENST00000336249	ENST00000217909		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
5CDS-intron	ENST00000336249	ENST00000336249		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
5CDS-3UTR	ENST00000336249	ENST00000488158		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
3UTR-intron	ENST00000488158	ENST00000217909		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
3UTR-intron	ENST00000488158	ENST00000336249		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
3UTR-3UTR	ENST00000488158	ENST00000488158		ChiTaRS3.1			AA975572	SLC25A43	chrX	118540545	-	SLC25A43	chrX	118585829	+
3UTR-3UTR	ENST00000361671	ENST00000361671		ChiTaRS3.1			CD240272	NAA35	chr9	88637116	+	NAA35	chr9	88637065	-
3UTR-intron	ENST00000361671	ENST00000376040		ChiTaRS3.1			CD240272	NAA35	chr9	88637116	+	NAA35	chr9	88637065	-
intron-3UTR	ENST00000376040	ENST00000361671		ChiTaRS3.1			CD240272	NAA35	chr9	88637116	+	NAA35	chr9	88637065	-
intron-intron	ENST00000376040	ENST00000376040		ChiTaRS3.1			CD240272	NAA35	chr9	88637116	+	NAA35	chr9	88637065	-
intron-3CDS	ENST00000300692	ENST00000528896		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000300692	ENST00000544884		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000300692	ENST00000389003		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-intron	ENST00000300692	ENST00000579924		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000529594	ENST00000528896		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000529594	ENST00000544884		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000529594	ENST00000389003		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-intron	ENST00000529594	ENST00000579924		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000392884	ENST00000528896		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000392884	ENST00000544884		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-3CDS	ENST00000392884	ENST00000389003		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-intron	ENST00000392884	ENST00000579924		ChiTaRS3.1			BF802522	CD3D	chr11	118212582	+	KIAA0100	chr17	26962070	+
intron-intron	ENST00000338316	ENST00000379471		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000338316	ENST00000464829		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000338316	ENST00000455041		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000537121	ENST00000379471		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000537121	ENST00000464829		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000537121	ENST00000455041		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000513693	ENST00000379471		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000513693	ENST00000464829		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-intron	ENST00000513693	ENST00000455041		ChiTaRS3.1			BQ430032	ADCY2	chr1	152006275	+	NOL6	chr9	33462421	-
intron-3CDS	ENST00000522684	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522684	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000535192	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000535192	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000519465	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519465	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000517887	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517887	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000521059	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000521059	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000395218	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000395218	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000538769	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000538769	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000340930	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000340930	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000519419	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519419	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000430260	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000430260	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000519881	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519881	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000520892	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520892	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000519635	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000519635	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000517712	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000517712	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000522950	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000522950	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-3CDS	ENST00000520151	ENST00000522684		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000535192		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000519465		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000517887		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000521059		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000395218		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000538769		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000340930		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000519419		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000430260		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000519881		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000520892		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000519635		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000517712		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000522950		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
intron-intron	ENST00000520151	ENST00000520151		ChiTaRS3.1			BE929722	PTK2	chr8	141669690	-	PTK2	chr8	141712775	-
3UTR-3UTR	ENST00000394196	ENST00000394196		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
3UTR-intron	ENST00000394196	ENST00000557381		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
3UTR-intron	ENST00000394196	ENST00000420239		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
3UTR-intron	ENST00000394196	ENST00000536619		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
3UTR-intron	ENST00000394196	ENST00000554122		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-3UTR	ENST00000557381	ENST00000394196		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000557381	ENST00000557381		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000557381	ENST00000420239		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000557381	ENST00000536619		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000557381	ENST00000554122		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-3UTR	ENST00000420239	ENST00000394196		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000420239	ENST00000557381		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000420239	ENST00000420239		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000420239	ENST00000536619		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000420239	ENST00000554122		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-3UTR	ENST00000536619	ENST00000394196		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000536619	ENST00000557381		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000536619	ENST00000420239		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000536619	ENST00000536619		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000536619	ENST00000554122		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-3UTR	ENST00000554122	ENST00000394196		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000554122	ENST00000557381		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000554122	ENST00000420239		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000554122	ENST00000536619		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-intron	ENST00000554122	ENST00000554122		ChiTaRS3.1			BM969602	CHD2	chr15	93570744	-	CHD2	chr15	93570700	+
intron-3CDS	ENST00000318789	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000318789	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000475937	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000493089	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000484350	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000318779	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000491238	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000498215	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000468577	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000317133		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375741		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375739		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000370623		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000544132		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000218789		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375736		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000426073		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375737		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375723		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000478679		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000472382	ENST00000483189		ChiTaRS3.1			BX093912	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000507479	ENST00000524482		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000507479	ENST00000534078		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000507479	ENST00000526171		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-3UTR	ENST00000507479	ENST00000279242		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000507479	ENST00000531705		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-3UTR	ENST00000335174	ENST00000524482		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000335174	ENST00000534078		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000335174	ENST00000526171		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-3UTR	ENST00000335174	ENST00000279242		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-intron	ENST00000335174	ENST00000531705		ChiTaRS3.1			BM552612	ANKRD37	chr4	186319406	-	MRPL49	chr11	64893817	+
intron-3CDS	ENST00000369061	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369061	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000357555	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000357555	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000358487	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000358487	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000356226	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000356226	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000369060	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369060	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000369059	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369059	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000346997	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000346997	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000457416	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000457416	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000351936	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000351936	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000360144	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000360144	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000369056	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000369056	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000490349	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000490349	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000359354	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000359354	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3CDS	ENST00000478859	ENST00000369061		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000357555		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000358487		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000356226		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000369060		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000369059		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000346997		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000457416		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000351936		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000360144		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000369056		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000490349		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000359354		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-intron	ENST00000478859	ENST00000478859		ChiTaRS3.1			CN345552	FGFR2	chr10	123239149	+	FGFR2	chr10	123239471	-
intron-3UTR	ENST00000331872	ENST00000341998		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-intron	ENST00000331872	ENST00000286344		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-3UTR	ENST00000417584	ENST00000341998		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-intron	ENST00000417584	ENST00000286344		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-3UTR	ENST00000311223	ENST00000341998		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-intron	ENST00000311223	ENST00000286344		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-3UTR	ENST00000491322	ENST00000341998		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-intron	ENST00000491322	ENST00000286344		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-3UTR	ENST00000339526	ENST00000341998		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-intron	ENST00000339526	ENST00000286344		ChiTaRS3.1			BE765952	GLUL	chr1	182352479	-	SLC24A2	chr9	19509293	-
intron-3CDS	ENST00000402038	ENST00000221166		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000402038	ENST00000518131		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000521540		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000437366		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000433454		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000221166		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000518131		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000521540		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000437366		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000433454		ChiTaRS3.1			AI971152	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000446823	ENST00000381750		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000446823	ENST00000381730		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000446823	ENST00000381728		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000446823	ENST00000448872		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000446823	ENST00000381732		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000446823	ENST00000445485		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-3CDS	ENST00000328914	ENST00000381750		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000328914	ENST00000381730		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000328914	ENST00000381728		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000328914	ENST00000448872		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000328914	ENST00000381732		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-intron	ENST00000328914	ENST00000445485		ChiTaRS3.1			BI030352	FOXK1	chr7	4765581	-	RCL1	chr9	4826981	-
intron-3UTR	ENST00000369485	ENST00000369485		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000369485	ENST00000265607		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000369485	ENST00000538899		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000369485	ENST00000369475		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000265607	ENST00000369485		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000265607	ENST00000265607		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000265607	ENST00000538899		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000265607	ENST00000369475		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000538899	ENST00000369485		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000538899	ENST00000265607		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000538899	ENST00000538899		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000538899	ENST00000369475		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000369475	ENST00000369485		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-3UTR	ENST00000369475	ENST00000265607		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000369475	ENST00000538899		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000369475	ENST00000369475		ChiTaRS3.1			AL138402	RNGTT	chr6	89320216	+	RNGTT	chr6	89320380	-
intron-intron	ENST00000423113	ENST00000423113		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000423113	ENST00000396033		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000423113	ENST00000302278		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000423113	ENST00000374956		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000423113	ENST00000484088		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000396033	ENST00000423113		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000396033	ENST00000396033		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000396033	ENST00000302278		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000396033	ENST00000374956		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000396033	ENST00000484088		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000302278	ENST00000423113		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000302278	ENST00000396033		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000302278	ENST00000302278		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000302278	ENST00000374956		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000302278	ENST00000484088		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000374956	ENST00000423113		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000374956	ENST00000396033		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000374956	ENST00000302278		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000374956	ENST00000374956		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000374956	ENST00000484088		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000484088	ENST00000423113		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000484088	ENST00000396033		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000484088	ENST00000302278		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000484088	ENST00000374956		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-intron	ENST00000484088	ENST00000484088		ChiTaRS3.1			BG938602	ITGB1	chr10	33224487	+	ITGB1	chr10	33218980	-
intron-3CDS	ENST00000262188	ENST00000239367		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000262188	ENST00000546019		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000262188	ENST00000463728		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000262188	ENST00000367368		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-3CDS	ENST00000392811	ENST00000239367		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000392811	ENST00000546019		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000392811	ENST00000463728		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000392811	ENST00000367368		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-3CDS	ENST00000356800	ENST00000239367		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000356800	ENST00000546019		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000356800	ENST00000463728		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000356800	ENST00000367368		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-3CDS	ENST00000477169	ENST00000239367		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000477169	ENST00000546019		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000477169	ENST00000463728		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-intron	ENST00000477169	ENST00000367368		ChiTaRS3.1			AL532622	SMARCD3	chr7	150974198	+	LRP11	chr6	150184656	-
intron-3CDS	ENST00000286301	ENST00000368003		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000286301	ENST00000473766		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3CDS	ENST00000515239	ENST00000368003		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000515239	ENST00000473766		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3CDS	ENST00000543093	ENST00000368003		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000543093	ENST00000473766		ChiTaRS3.1			BI051322	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3CDS	ENST00000452853	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000452853	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000452853	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000239940	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000239940	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000239940	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000423691	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000423691	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000423691	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481767	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481767	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481767	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000494827	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000494827	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000494827	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000490975	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000490975	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000490975	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000497148	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000497148	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000497148	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000475518	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000475518	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000475518	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481275	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481275	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000481275	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000498307	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000498307	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000498307	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000489155	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000489155	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000489155	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461930	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461930	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461930	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461868	ENST00000248594		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461868	ENST00000415482		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-3CDS	ENST00000461868	ENST00000435495		ChiTaRS3.1			AI084432	PFN2	chr3	149682753	+	PTPN12	chr7	77256631	-
intron-intron	ENST00000178638	ENST00000178638		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000178638	ENST00000344366		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000178638	ENST00000422263		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000178638	ENST00000560666		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000344366	ENST00000178638		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000344366	ENST00000344366		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000344366	ENST00000422263		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000344366	ENST00000560666		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000422263	ENST00000178638		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000422263	ENST00000344366		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000422263	ENST00000422263		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000422263	ENST00000560666		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000560666	ENST00000178638		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000560666	ENST00000344366		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000560666	ENST00000422263		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
intron-intron	ENST00000560666	ENST00000560666		ChiTaRS3.1			AI478632	CA12	chr15	63620058	+	CA12	chr15	63619575	+
3UTR-3UTR	ENST00000229239	ENST00000360472		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000229239	ENST00000368077		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000229239	ENST00000368076		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000229239	ENST00000488858		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396856	ENST00000360472		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396856	ENST00000368077		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396856	ENST00000368076		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396856	ENST00000488858		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396861	ENST00000360472		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396861	ENST00000368077		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396861	ENST00000368076		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396861	ENST00000488858		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396859	ENST00000360472		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396859	ENST00000368077		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396859	ENST00000368076		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396859	ENST00000488858		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396858	ENST00000360472		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396858	ENST00000368077		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-3UTR	ENST00000396858	ENST00000368076		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
3UTR-intron	ENST00000396858	ENST00000488858		ChiTaRS3.1			BC013852	GAPDH	chr12	6647444	+	PEA15	chr1	160184354	+
intron-intron	ENST00000530167	ENST00000274459		ChiTaRS3.1			AI243752	H2AFX	chr11	118965445	+	ATG12	chr5	115176895	+
intron-intron	ENST00000530167	ENST00000509910		ChiTaRS3.1			AI243752	H2AFX	chr11	118965445	+	ATG12	chr5	115176895	+
intron-intron	ENST00000530167	ENST00000500945		ChiTaRS3.1			AI243752	H2AFX	chr11	118965445	+	ATG12	chr5	115176895	+
intron-intron	ENST00000530167	ENST00000509598		ChiTaRS3.1			AI243752	H2AFX	chr11	118965445	+	ATG12	chr5	115176895	+
intron-intron	ENST00000532918	ENST00000532918		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000532918	ENST00000355430		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000532918	ENST00000540738		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000532918	ENST00000526150		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000355430	ENST00000532918		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000355430	ENST00000355430		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000355430	ENST00000540738		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000355430	ENST00000526150		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000540738	ENST00000532918		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000540738	ENST00000355430		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000540738	ENST00000540738		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000540738	ENST00000526150		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000526150	ENST00000532918		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000526150	ENST00000355430		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000526150	ENST00000540738		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-intron	ENST00000526150	ENST00000526150		ChiTaRS3.1			CN370412	COLCA1	chr11	111171936	+	COLCA1	chr11	111171921	-
intron-3CDS	ENST00000309283	ENST00000246672		ChiTaRS3.1			BE720232	SLC6A15	chr12	85305516	-	NR1D1	chr17	38250331	+
intron-3CDS	ENST00000266682	ENST00000246672		ChiTaRS3.1			BE720232	SLC6A15	chr12	85305516	-	NR1D1	chr17	38250331	+
intron-3CDS	ENST00000552192	ENST00000246672		ChiTaRS3.1			BE720232	SLC6A15	chr12	85305516	-	NR1D1	chr17	38250331	+
intron-3CDS	ENST00000551388	ENST00000246672		ChiTaRS3.1			BE720232	SLC6A15	chr12	85305516	-	NR1D1	chr17	38250331	+
intron-3CDS	ENST00000450363	ENST00000246672		ChiTaRS3.1			BE720232	SLC6A15	chr12	85305516	-	NR1D1	chr17	38250331	+
3UTR-3UTR	ENST00000263228	ENST00000169298		ChiTaRS3.1			AW609212	UBE2R2	chr9	33917666	-	ST6GAL1	chr3	186794510	+
3UTR-3UTR	ENST00000263228	ENST00000457772		ChiTaRS3.1			AW609212	UBE2R2	chr9	33917666	-	ST6GAL1	chr3	186794510	+
3UTR-3UTR	ENST00000263228	ENST00000448044		ChiTaRS3.1			AW609212	UBE2R2	chr9	33917666	-	ST6GAL1	chr3	186794510	+
3UTR-intron	ENST00000263228	ENST00000487031		ChiTaRS3.1			AW609212	UBE2R2	chr9	33917666	-	ST6GAL1	chr3	186794510	+
3UTR-3UTR	ENST00000254940	ENST00000297151		ChiTaRS3.1			CR737082	NIP7	chr16	69376240	+	SLU7	chr5	159829766	-
intron-3UTR	ENST00000569637	ENST00000297151		ChiTaRS3.1			CR737082	NIP7	chr16	69376240	+	SLU7	chr5	159829766	-
3UTR-3UTR	ENST00000254941	ENST00000297151		ChiTaRS3.1			CR737082	NIP7	chr16	69376240	+	SLU7	chr5	159829766	-
intron-3CDS	ENST00000384994	ENST00000217515		ChiTaRS3.1			BE177702	NEAT1	chr11	65191194	-	TXNL1	chr18	54283533	-
intron-intron	ENST00000384994	ENST00000585497		ChiTaRS3.1			BE177702	NEAT1	chr11	65191194	-	TXNL1	chr18	54283533	-
intron-intron	ENST00000384994	ENST00000590954		ChiTaRS3.1			BE177702	NEAT1	chr11	65191194	-	TXNL1	chr18	54283533	-
intron-intron	ENST00000384994	ENST00000540155		ChiTaRS3.1			BE177702	NEAT1	chr11	65191194	-	TXNL1	chr18	54283533	-
intron-3CDS	ENST00000465039	ENST00000379802		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
intron-3CDS	ENST00000465039	ENST00000418664		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
intron-3CDS	ENST00000440097	ENST00000379802		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
intron-3CDS	ENST00000440097	ENST00000418664		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
In-frame	ENST00000273317	ENST00000379802		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
In-frame	ENST00000273317	ENST00000418664		ChiTaRS3.1			BF871822	LIMD1	chr3	45718426	-	DSP	chr6	7579755	-
intron-3CDS	ENST00000334731	ENST00000336498		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000334731	ENST00000414545		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-intron	ENST00000334731	ENST00000510076		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000377031	ENST00000336498		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000377031	ENST00000414545		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-intron	ENST00000377031	ENST00000510076		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000486911	ENST00000336498		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000486911	ENST00000414545		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-intron	ENST00000486911	ENST00000510076		ChiTaRS3.1			BE931282	C9orf85	chr9	74587484	-	ARHGAP10	chr4	148886241	+
intron-3CDS	ENST00000519416	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000519416	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000519416	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520615	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520615	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520615	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000443286	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000443286	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000443286	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520340	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520340	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520340	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000518415	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000518415	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000518415	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000522752	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000522752	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000522752	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000348567	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000348567	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000348567	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000330691	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000330691	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000330691	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000317827	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000317827	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000317827	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000379931	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000379931	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000379931	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000276520	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-3CDS	ENST00000276520	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
3UTR-intron	ENST00000276520	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520973	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520973	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520973	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520611	ENST00000359337		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000520611	ENST00000449103		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-intron	ENST00000520611	ENST00000496720		ChiTaRS3.1			BE504712	TACC1	chr8	38710310	-	PLXNB2	chr22	50728748	+
intron-3CDS	ENST00000483017	ENST00000483017		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
intron-3CDS	ENST00000483017	ENST00000329146		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
intron-3UTR	ENST00000483017	ENST00000548989		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3CDS	ENST00000329146	ENST00000483017		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3CDS	ENST00000329146	ENST00000329146		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3UTR	ENST00000329146	ENST00000548989		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3CDS	ENST00000548989	ENST00000483017		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3CDS	ENST00000548989	ENST00000329146		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
3UTR-3UTR	ENST00000548989	ENST00000548989		ChiTaRS3.1			AW246212	CRIP2	chr14	105946245	+	CRIP2	chr14	105944826	+
intron-intron	ENST00000264914	ENST00000251127		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000264914	ENST00000470333		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000264914	ENST00000376196		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000264914	ENST00000376200		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000396151	ENST00000251127		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000396151	ENST00000470333		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000396151	ENST00000376196		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000396151	ENST00000376200		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000565165	ENST00000251127		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000565165	ENST00000470333		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000565165	ENST00000376196		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000565165	ENST00000376200		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000521800	ENST00000251127		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000521800	ENST00000470333		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000521800	ENST00000376196		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
intron-intron	ENST00000521800	ENST00000376200		ChiTaRS3.1			BP424812	ARSB	chr5	78231105	-	NALCN	chr13	102045709	+
3UTR-3UTR	ENST00000296161	ENST00000374975		ChiTaRS3.1			AK093782	DTX3L	chr3	122293268	+	HLA-DRB5	chr6	32485331	-
intron-3UTR	ENST00000383661	ENST00000374975		ChiTaRS3.1			AK093782	DTX3L	chr3	122293268	+	HLA-DRB5	chr6	32485331	-
5CDS-intron	ENST00000260970	ENST00000274008		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000260970	ENST00000422835		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-intron	ENST00000409714	ENST00000274008		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000409714	ENST00000422835		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
intron-intron	ENST00000462903	ENST00000274008		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
intron-3UTR	ENST00000462903	ENST00000422835		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-intron	ENST00000448752	ENST00000274008		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000448752	ENST00000422835		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
3UTR-intron	ENST00000482772	ENST00000274008		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
3UTR-3UTR	ENST00000482772	ENST00000422835		ChiTaRS3.1			BU679512	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW856552	LAMC1	chr1	183003711	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW856552	LAMC1	chr1	183003711	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW856552	LAMC1	chr1	183003711	-	LAMC1	chr1	183048096	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW856552	LAMC1	chr1	183003711	-	LAMC1	chr1	183048096	+
5CDS-3UTR	ENST00000319194	ENST00000371065		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
5CDS-intron	ENST00000319194	ENST00000484243		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
3UTR-3UTR	ENST00000441424	ENST00000371065		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
3UTR-intron	ENST00000441424	ENST00000484243		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
5CDS-3UTR	ENST00000319212	ENST00000371065		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
5CDS-intron	ENST00000319212	ENST00000484243		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
intron-3UTR	ENST00000568874	ENST00000371065		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
intron-intron	ENST00000568874	ENST00000484243		ChiTaRS3.1			BQ307642	DIS3L	chr15	66615127	+	LEPROT	chr1	65899242	+
3UTR-3CDS	ENST00000264258	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-3CDS	ENST00000264258	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
3UTR-intron	ENST00000264258	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409000	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409000	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409028	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409028	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409320	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409320	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
Frame-shit	ENST00000409733	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
5CDS-intron	ENST00000409733	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409650	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409650	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409038	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409038	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000449098		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000320084		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000336053		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000554969		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000556142		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000554455		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000430246		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000553753		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000555914		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3CDS	ENST00000409711	ENST00000555309		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000556628		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000555883		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000556513		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000557201		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000553300		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000556897		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-intron	ENST00000409711	ENST00000420743		ChiTaRS3.1			BP377902	RPL31	chr2	101622880	+	HNRNPC	chr14	21699201	-
intron-3UTR	ENST00000381769	ENST00000381769		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000381769	ENST00000348335		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000381769	ENST00000381771		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-intron	ENST00000381769	ENST00000158166		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000348335	ENST00000381769		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000348335	ENST00000348335		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000348335	ENST00000381771		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-intron	ENST00000348335	ENST00000158166		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000381771	ENST00000381769		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000381771	ENST00000348335		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000381771	ENST00000381771		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-intron	ENST00000381771	ENST00000158166		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000158166	ENST00000381769		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000158166	ENST00000348335		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-3UTR	ENST00000158166	ENST00000381771		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
intron-intron	ENST00000158166	ENST00000158166		ChiTaRS3.1			BU193052	CAMKK1	chr17	3765440	+	CAMKK1	chr17	3765368	-
3UTR-3UTR	ENST00000360359	ENST00000497081		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
3UTR-3UTR	ENST00000360359	ENST00000395592		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
3UTR-3UTR	ENST00000360359	ENST00000299610		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
3UTR-5UTR	ENST00000360359	ENST00000574313		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000535627	ENST00000497081		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000535627	ENST00000395592		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000535627	ENST00000299610		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-5UTR	ENST00000535627	ENST00000574313		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000470698	ENST00000497081		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000470698	ENST00000395592		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000470698	ENST00000299610		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-5UTR	ENST00000470698	ENST00000574313		ChiTaRS3.1			AA496022	ANKS1A	chr6	35057547	-	MFAP4	chr17	19287290	+
intron-3UTR	ENST00000366943	ENST00000389266		ChiTaRS3.1			AA503472	USH2A	chr1	215800315	+	GARS	chr7	30673602	+
intron-3UTR	ENST00000307340	ENST00000389266		ChiTaRS3.1			AA503472	USH2A	chr1	215800315	+	GARS	chr7	30673602	+
intron-3UTR	ENST00000366942	ENST00000389266		ChiTaRS3.1			AA503472	USH2A	chr1	215800315	+	GARS	chr7	30673602	+
intron-3UTR	ENST00000361475	ENST00000361475		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000361475	ENST00000536701		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000361475	ENST00000536724		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-3UTR	ENST00000536701	ENST00000361475		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000536701	ENST00000536701		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000536701	ENST00000536724		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-3UTR	ENST00000536724	ENST00000361475		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000536724	ENST00000536701		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000536724	ENST00000536724		ChiTaRS3.1			BF343182	TGM2	chr20	36756948	+	TGM2	chr20	36756914	-
intron-intron	ENST00000537098	ENST00000361193		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000537098	ENST00000411502		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000537098	ENST00000546047		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000537098	ENST00000571602		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000537098	ENST00000572725		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000539778	ENST00000361193		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000539778	ENST00000411502		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000539778	ENST00000546047		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000539778	ENST00000571602		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000539778	ENST00000572725		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000566513	ENST00000361193		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000566513	ENST00000411502		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000566513	ENST00000546047		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000566513	ENST00000571602		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000566513	ENST00000572725		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000398040	ENST00000361193		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000398040	ENST00000411502		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000398040	ENST00000546047		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000398040	ENST00000571602		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000398040	ENST00000572725		ChiTaRS3.1			BF830042	CMIP	chr16	81537301	+	SLC26A11	chr17	78216790	+
intron-intron	ENST00000520539	ENST00000520539		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000220959		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000518205		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000521922		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000519528		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000520539		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000220959		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000518205		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000521922		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000519528		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000520539		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000220959		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000518205		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000521922		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000519528		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000520539		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000220959		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000518205		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000521922		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000519528		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000520539		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000220959		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000518205		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000521922		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000519528		ChiTaRS3.1			AW899492	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-3CDS	ENST00000401084	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000401084	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000401084	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000401084	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000401084	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264203	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264203	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264203	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264203	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000264203	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375142	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375142	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375142	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375142	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000375142	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000433834	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000433834	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000433834	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000433834	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000433834	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264202	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264202	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264202	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000264202	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000264202	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000482808	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000482808	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000482808	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000482808	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000482808	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375144	ENST00000423113		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375144	ENST00000396033		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375144	ENST00000302278		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-3CDS	ENST00000375144	ENST00000374956		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000375144	ENST00000484088		ChiTaRS3.1			CA420172	CAPZB	chr1	19665947	+	ITGB1	chr10	33200902	-
intron-intron	ENST00000329841	ENST00000329841		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000329841	ENST00000346623		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000329841	ENST00000557963		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000329841	ENST00000560555		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000346623	ENST00000329841		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000346623	ENST00000346623		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000346623	ENST00000557963		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000346623	ENST00000560555		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000557963	ENST00000329841		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000557963	ENST00000346623		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000557963	ENST00000557963		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000557963	ENST00000560555		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000560555	ENST00000329841		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000560555	ENST00000346623		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000560555	ENST00000557963		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
intron-intron	ENST00000560555	ENST00000560555		ChiTaRS3.1			BU608092	ALDH1A3	chr15	101452037	-	ALDH1A3	chr15	101451947	+
5CDS-5UTR	ENST00000466830	ENST00000479665		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
5CDS-intron	ENST00000466830	ENST00000295748		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
5CDS-5UTR	ENST00000466830	ENST00000334100		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
5CDS-5UTR	ENST00000466830	ENST00000420543		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
5CDS-5UTR	ENST00000466830	ENST00000457172		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000423894	ENST00000479665		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-intron	ENST00000423894	ENST00000295748		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000423894	ENST00000334100		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000423894	ENST00000420543		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000423894	ENST00000457172		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000469102	ENST00000479665		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-intron	ENST00000469102	ENST00000295748		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000469102	ENST00000334100		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000469102	ENST00000420543		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-5UTR	ENST00000469102	ENST00000457172		ChiTaRS3.1			BE739272	CMC1	chr3	28304871	+	AZI2	chr3	28382115	-
intron-intron	ENST00000321265	ENST00000321265		ChiTaRS3.1			BF770972	NUDC	chr1	27179329	-	NUDC	chr1	27180995	-
intron-intron	ENST00000321265	ENST00000484772		ChiTaRS3.1			BF770972	NUDC	chr1	27179329	-	NUDC	chr1	27180995	-
intron-intron	ENST00000484772	ENST00000321265		ChiTaRS3.1			BF770972	NUDC	chr1	27179329	-	NUDC	chr1	27180995	-
intron-intron	ENST00000484772	ENST00000484772		ChiTaRS3.1			BF770972	NUDC	chr1	27179329	-	NUDC	chr1	27180995	-
intron-intron	ENST00000368679	ENST00000368679		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000368679	ENST00000368676		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000368679	ENST00000467145		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000368676	ENST00000368679		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000368676	ENST00000368676		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000368676	ENST00000467145		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000467145	ENST00000368679		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000467145	ENST00000368676		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000467145	ENST00000467145		ChiTaRS3.1			BM983842	ADAM12	chr10	127729205	-	ADAM12	chr10	127729035	+
intron-intron	ENST00000355973	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000355973	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000355973	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000355973	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000376977	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000376977	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000376977	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000376977	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377016	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377016	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377016	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377016	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377012	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377012	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377012	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377012	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377034	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377034	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000377034	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000377034	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000449163	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000449163	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000449163	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000449163	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000452300	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000452300	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000452300	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000452300	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000547410	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000547410	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000547410	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000547410	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000546913	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000546913	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000546913	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000546913	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000550428	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000550428	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000550428	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000550428	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000489750	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000489750	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000489750	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000489750	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000419674	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000419674	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000419674	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000419674	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000439457	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000439457	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000439457	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000439457	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000438094	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000438094	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000438094	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000438094	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000548767	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000548767	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000548767	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000548767	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000486623	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000486623	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000486623	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000486623	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000434660	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000434660	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000434660	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000434660	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000423604	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000423604	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000423604	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000423604	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000414980	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000414980	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000414980	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000414980	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000417759	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000417759	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000417759	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000417759	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000551140	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000551140	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000551140	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000551140	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000446436	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000446436	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000446436	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000446436	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000471103	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000471103	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000471103	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000471103	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000443440	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000443440	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000443440	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000443440	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000425097	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000425097	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000425097	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000425097	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383543	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383543	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383543	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383543	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000552399	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000552399	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000552399	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000552399	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383537	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383537	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383537	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383537	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000493602	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000493602	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000493602	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000493602	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383541	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383541	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383541	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383541	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383542	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383542	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383542	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383542	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383639	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383639	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383639	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383639	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000551423	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000551423	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000551423	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000551423	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383636	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383636	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383636	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383636	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000495153	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000495153	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000495153	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000495153	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383637	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383637	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383637	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383637	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383638	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383638	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000383638	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000383638	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000448754	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000448754	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000448754	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000448754	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000550820	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000550820	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000550820	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000550820	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000458612	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000458612	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000458612	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000458612	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000464091	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000464091	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000464091	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000464091	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000440316	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000440316	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000440316	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000440316	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000418225	ENST00000545111		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000418225	ENST00000394232		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-intron	ENST00000418225	ENST00000557291		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000418225	ENST00000330276		ChiTaRS3.1			DA060372	GABBR1	chr6	898759	-	SV2B	chr15	91840386	+
intron-3UTR	ENST00000295974	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000295974	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000295974	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000513140	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000513140	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000513140	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000508593	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000508593	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000508593	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000506352	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000506352	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000506352	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000511572	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000511572	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000511572	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000543538	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000543538	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000543538	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000502841	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000502841	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000502841	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000504305	ENST00000295974		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000513140		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000508593		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000506352		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000511572		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-3UTR	ENST00000504305	ENST00000543538		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000502841		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000504305	ENST00000504305		ChiTaRS3.1			CN266502	APBB2	chr4	40814963	+	APBB2	chr4	40814934	-
intron-intron	ENST00000321063	ENST00000409261		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000321063	ENST00000409213		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000321063	ENST00000405974		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000321063	ENST00000317721		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000321063	ENST00000473859		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000359827	ENST00000409261		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000359827	ENST00000409213		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000359827	ENST00000405974		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000359827	ENST00000317721		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000359827	ENST00000473859		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000423507	ENST00000409261		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000423507	ENST00000409213		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000423507	ENST00000405974		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000423507	ENST00000317721		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000423507	ENST00000473859		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000378539	ENST00000409261		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000378539	ENST00000409213		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000378539	ENST00000405974		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000378539	ENST00000317721		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000378539	ENST00000473859		ChiTaRS3.1			BF951342	PLXNA4	chr7	132023073	+	NCKAP5	chr2	134209177	+
intron-intron	ENST00000344204	ENST00000268154		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000344204	ENST00000560908		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000537187	ENST00000268154		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000537187	ENST00000560908		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000509967	ENST00000268154		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000509967	ENST00000560908		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000515710	ENST00000268154		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000515710	ENST00000560908		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000344135	ENST00000268154		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-intron	ENST00000344135	ENST00000560908		ChiTaRS3.1			BE810822	TRIO	chr5	14198717	+	ZNF710	chr15	90581522	-
intron-3CDS	ENST00000360319	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000360319	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000360319	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000360319	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000360319	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000422373	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000422373	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000422373	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000422373	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000422373	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369850	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369850	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369850	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369850	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369850	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369856	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369856	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000344736	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000344736	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000344736	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000344736	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000344736	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000498491	ENST00000369856		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000498491	ENST00000344736		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BE830722	FLNA	chrX	153593246	+	FLNA	chrX	153594712	-
intron-3UTR	ENST00000403712	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403712	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403712	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403712	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403712	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403712	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403712	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403712	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000405430	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000405430	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000405430	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000405430	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000405430	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000405430	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000405430	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000405430	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000356150	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000356150	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000356150	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000356150	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000356150	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000356150	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000356150	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000356150	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-3UTR	ENST00000403658	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-3UTR	ENST00000403658	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-3UTR	ENST00000403658	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-intron	ENST00000403658	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-intron	ENST00000403658	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-intron	ENST00000403658	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-3UTR	ENST00000403658	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
5CDS-3UTR	ENST00000403658	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000468321	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000468321	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000468321	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000468321	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000468321	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000468321	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000468321	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000468321	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000402632	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000402632	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000402632	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000402632	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000402632	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000402632	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000402632	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000402632	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000415006	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000415006	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000415006	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000415006	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000415006	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000415006	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000415006	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000415006	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403657	ENST00000403712		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403657	ENST00000405430		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403657	ENST00000356150		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403657	ENST00000403658		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403657	ENST00000468321		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000403657	ENST00000402632		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403657	ENST00000415006		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-3UTR	ENST00000403657	ENST00000403657		ChiTaRS3.1			BM457362	SH3YL1	chr2	218660	+	SH3YL1	chr2	218503	-
intron-intron	ENST00000545472	ENST00000392587		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000545472	ENST00000392586		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000545472	ENST00000392588		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000545472	ENST00000392589		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000545472	ENST00000359451		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
3UTR-intron	ENST00000296257	ENST00000392587		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
3UTR-intron	ENST00000296257	ENST00000392586		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
3UTR-intron	ENST00000296257	ENST00000392588		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
3UTR-intron	ENST00000296257	ENST00000392589		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
3UTR-intron	ENST00000296257	ENST00000359451		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000427465	ENST00000392587		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000427465	ENST00000392586		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000427465	ENST00000392588		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000427465	ENST00000392589		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000427465	ENST00000359451		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000465201	ENST00000392587		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000465201	ENST00000392586		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000465201	ENST00000392588		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000465201	ENST00000392589		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-intron	ENST00000465201	ENST00000359451		ChiTaRS3.1			AB037752	SENP2	chr3	185348999	+	WASF1	chr6	110458615	-
intron-5UTR	ENST00000245907	ENST00000295897		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000245907	ENST00000415165		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000245907	ENST00000503124		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000245907	ENST00000509063		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-intron	ENST00000245907	ENST00000401494		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-intron	ENST00000245907	ENST00000505649		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000599668	ENST00000295897		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000599668	ENST00000415165		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000599668	ENST00000503124		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000599668	ENST00000509063		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-intron	ENST00000599668	ENST00000401494		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-intron	ENST00000599668	ENST00000505649		ChiTaRS3.1			AI305112	C3	chr19	6682029	+	ALB	chr4	74270017	+
intron-5UTR	ENST00000397887	ENST00000417689		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397887	ENST00000317091		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000330938	ENST00000417689		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000330938	ENST00000317091		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000445724	ENST00000417689		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000445724	ENST00000317091		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397886	ENST00000417689		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397886	ENST00000317091		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000494690	ENST00000417689		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000494690	ENST00000317091		ChiTaRS3.1			AA368402	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-intron	ENST00000539888	ENST00000369415		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000539888	ENST00000359203		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000539888	ENST00000492783		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000535686	ENST00000369415		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000535686	ENST00000359203		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000535686	ENST00000492783		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000540564	ENST00000369415		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000540564	ENST00000359203		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000540564	ENST00000492783		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000367619	ENST00000369415		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000367619	ENST00000359203		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-intron	ENST00000367619	ENST00000492783		ChiTaRS3.1			CB963022	SOAT1	chr1	179281515	+	RRAGD	chr6	90117108	-
intron-3UTR	ENST00000310999	ENST00000320912		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-intron	ENST00000310999	ENST00000507420		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000310999	ENST00000382581		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000430466	ENST00000320912		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-intron	ENST00000430466	ENST00000507420		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000430466	ENST00000382581		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000524576	ENST00000320912		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-intron	ENST00000524576	ENST00000507420		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000524576	ENST00000382581		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000329819	ENST00000320912		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-intron	ENST00000329819	ENST00000507420		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-3UTR	ENST00000329819	ENST00000382581		ChiTaRS3.1			AF090922	MRPL11	chr11	66206312	+	MRFAP1	chr4	6643927	+
intron-intron	ENST00000459775	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000459775	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000459775	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000459775	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000459775	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000459775	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000450066	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409025	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409470	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000323701	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000459775		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000450066		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000409025		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000409470		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000323701		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-intron	ENST00000409766	ENST00000409766		ChiTaRS3.1			BE839522	USP39	chr2	85833534	+	USP39	chr2	85833592	-
intron-3UTR	ENST00000239944	ENST00000331872		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000239944	ENST00000417584		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000239944	ENST00000311223		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-5UTR	ENST00000239944	ENST00000491322		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000239944	ENST00000339526		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000479209	ENST00000331872		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000479209	ENST00000417584		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000479209	ENST00000311223		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-5UTR	ENST00000479209	ENST00000491322		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000479209	ENST00000339526		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000487153	ENST00000331872		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000487153	ENST00000417584		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000487153	ENST00000311223		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-5UTR	ENST00000487153	ENST00000491322		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000487153	ENST00000339526		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000491660	ENST00000331872		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000491660	ENST00000417584		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000491660	ENST00000311223		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-5UTR	ENST00000491660	ENST00000491322		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000491660	ENST00000339526		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000490945	ENST00000331872		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000490945	ENST00000417584		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000490945	ENST00000311223		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-5UTR	ENST00000490945	ENST00000491322		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
intron-3UTR	ENST00000490945	ENST00000339526		ChiTaRS3.1			AV650942	SERP1	chr3	150299506	-	GLUL	chr1	182353336	-
5CDS-intron	ENST00000544301	ENST00000437232		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
5CDS-5UTR	ENST00000544301	ENST00000605833		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
5CDS-intron	ENST00000224237	ENST00000437232		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
5CDS-5UTR	ENST00000224237	ENST00000605833		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
intron-intron	ENST00000485947	ENST00000437232		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
intron-5UTR	ENST00000485947	ENST00000605833		ChiTaRS3.1			BG928012	VIM	chr10	17275787	+	VIM-AS1	chr10	17271730	+
intron-3UTR	ENST00000553558	ENST00000446176		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000553558	ENST00000420781		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000553558	ENST00000355681		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000553558	ENST00000443566		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000553558	ENST00000478129		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000334988	ENST00000446176		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000334988	ENST00000420781		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000334988	ENST00000355681		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000334988	ENST00000443566		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000334988	ENST00000478129		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000566478	ENST00000446176		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000566478	ENST00000420781		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000566478	ENST00000355681		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000566478	ENST00000443566		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000566478	ENST00000478129		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000560393	ENST00000446176		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000560393	ENST00000420781		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000560393	ENST00000355681		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000560393	ENST00000443566		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-intron	ENST00000560393	ENST00000478129		ChiTaRS3.1			CD172352	HEATR4	chr14	73982134	+	FNBP1	chr9	132651610	-
intron-3UTR	ENST00000409206	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409206	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409206	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409206	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409594	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409594	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000289528	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000289528	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409412	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409412	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-3UTR	ENST00000409097	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
3UTR-intron	ENST00000409097	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-3UTR	ENST00000409336	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
5CDS-intron	ENST00000409336	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409217	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409217	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000468301	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000468301	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000409319	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000409319	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000409206		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000409594		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-3UTR	ENST00000444522	ENST00000289528		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409412		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409097		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409336		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409217		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000468301		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000409319		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000444522	ENST00000444522		ChiTaRS3.1			AA490922	ZFAND2B	chr2	220074145	-	ZFAND2B	chr2	220073150	+
intron-intron	ENST00000242810	ENST00000242810		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000242810	ENST00000454652		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000242810	ENST00000476808		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000242810	ENST00000461813		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000454652	ENST00000242810		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000454652	ENST00000454652		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000454652	ENST00000476808		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000454652	ENST00000461813		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000476808	ENST00000242810		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000476808	ENST00000454652		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000476808	ENST00000476808		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000476808	ENST00000461813		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000461813	ENST00000242810		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000461813	ENST00000454652		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000461813	ENST00000476808		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
intron-intron	ENST00000461813	ENST00000461813		ChiTaRS3.1			BF980652	KLHL24	chr3	183360109	+	KLHL24	chr3	183360132	-
Frame-shit	ENST00000394375	ENST00000394375		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000394375	ENST00000608620		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000394375	ENST00000238983		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000394375	ENST00000355843		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000608620	ENST00000394375		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000608620	ENST00000608620		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000608620	ENST00000238983		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000608620	ENST00000355843		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000238983	ENST00000394375		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000238983	ENST00000608620		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000238983	ENST00000238983		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000238983	ENST00000355843		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000355843	ENST00000394375		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
Frame-shit	ENST00000355843	ENST00000608620		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000355843	ENST00000238983		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
5CDS-intron	ENST00000355843	ENST00000355843		ChiTaRS3.1			BP341172	LIPF	chr10	90433488	+	LIPF	chr10	90424203	+
intron-intron	ENST00000435120	ENST00000199447		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000435120	ENST00000440017		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000203630	ENST00000199447		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000203630	ENST00000440017		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000542154	ENST00000199447		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000542154	ENST00000440017		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000539187	ENST00000199447		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000539187	ENST00000440017		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000564181	ENST00000199447		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000564181	ENST00000440017		ChiTaRS3.1			AA064972	MLF2	chr12	6875726	+	NME8	chr7	37850007	-
intron-intron	ENST00000344041	ENST00000596304		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000344041	ENST00000430157		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000344041	ENST00000596273		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000344041	ENST00000442744		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000344041	ENST00000595683		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000344041	ENST00000595158		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000344041	ENST00000598780		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000344041	ENST00000599551		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000344041	ENST00000597451		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000344041	ENST00000599595		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000475788	ENST00000596304		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000475788	ENST00000430157		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000475788	ENST00000596273		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000475788	ENST00000442744		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000475788	ENST00000595683		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000475788	ENST00000595158		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000475788	ENST00000598780		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000475788	ENST00000599551		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000475788	ENST00000597451		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000475788	ENST00000599595		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000405243	ENST00000596304		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000405243	ENST00000430157		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000405243	ENST00000596273		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000405243	ENST00000442744		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000405243	ENST00000595683		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000405243	ENST00000595158		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000405243	ENST00000598780		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000405243	ENST00000599551		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000405243	ENST00000597451		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000405243	ENST00000599595		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000401957	ENST00000596304		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000401957	ENST00000430157		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000401957	ENST00000596273		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000401957	ENST00000442744		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000401957	ENST00000595683		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000401957	ENST00000595158		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000401957	ENST00000598780		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000401957	ENST00000599551		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-3UTR	ENST00000401957	ENST00000597451		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000401957	ENST00000599595		ChiTaRS3.1			AA165052	RAPGEF5	chr7	22291385	-	UBA52	chr19	18686040	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807602	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
3UTR-3UTR	ENST00000479668	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000479668	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000479668	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000479668	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000479668	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000540729	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000540729	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000540729	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000540729	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000540729	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000444957	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000444957	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000444957	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000444957	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000444957	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000397281	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000397281	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000397281	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000397281	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000397281	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000466559	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000466559	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000466559	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000466559	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000466559	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000489432	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000489432	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000489432	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000489432	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000489432	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000482680	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000482680	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000482680	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000482680	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000482680	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518514	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518514	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518514	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518514	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518514	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518462	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518462	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518462	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-intron	ENST00000518462	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
intron-3UTR	ENST00000518462	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000425389	ENST00000479668		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000540729		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000425389	ENST00000444957		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000425389	ENST00000397281		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000466559		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000489432		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000482680		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000518514		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-intron	ENST00000425389	ENST00000518462		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
3UTR-3UTR	ENST00000425389	ENST00000425389		ChiTaRS3.1			BU630092	REPIN1	chr7	150070657	-	REPIN1	chr7	150070619	+
5CDS-3UTR	ENST00000382110	ENST00000502732		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000367623		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000507173		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000511413		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000392043		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000382110	ENST00000408940		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000344730		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000512653		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000382110	ENST00000504405		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000324266	ENST00000502732		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000367623		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000507173		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000511413		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000392043		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-3UTR	ENST00000324266	ENST00000408940		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000344730		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000512653		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
5CDS-intron	ENST00000324266	ENST00000504405		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-3UTR	ENST00000469147	ENST00000502732		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000367623		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000507173		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000511413		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000392043		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-3UTR	ENST00000469147	ENST00000408940		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000344730		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000512653		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
3UTR-intron	ENST00000469147	ENST00000504405		ChiTaRS3.1			BF833452	TRAPPC12	chr2	3447603	+	ABL2	chr1	179069474	-
intron-intron	ENST00000452400	ENST00000342679		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000452400	ENST00000534743		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000452400	ENST00000361818		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000452400	ENST00000316920		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000267974	ENST00000342679		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000267974	ENST00000534743		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000267974	ENST00000361818		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000267974	ENST00000316920		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000524223	ENST00000342679		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000524223	ENST00000534743		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000524223	ENST00000361818		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-intron	ENST00000524223	ENST00000316920		ChiTaRS3.1			BG674032	NCOA2	chr8	71172635	-	MAP2K3	chr17	21213574	+
intron-3UTR	ENST00000430249	ENST00000367739		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000430249	ENST00000543628		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000430249	ENST00000367735		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000430249	ENST00000478333		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-3UTR	ENST00000233072	ENST00000367739		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000233072	ENST00000543628		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000233072	ENST00000367735		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000233072	ENST00000478333		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-3UTR	ENST00000451903	ENST00000367739		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000451903	ENST00000543628		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000451903	ENST00000367735		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000451903	ENST00000478333		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-3UTR	ENST00000497121	ENST00000367739		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000497121	ENST00000543628		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000497121	ENST00000367735		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-intron	ENST00000497121	ENST00000478333		ChiTaRS3.1			BX102832	CPS1	chr2	211523729	+	IFNGR1	chr6	137518703	-
intron-3CDS	ENST00000402198	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402198	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402198	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402198	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402198	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000402198	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402466	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402466	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402466	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402466	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000402466	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000402466	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000406341	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000406341	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000406341	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000406341	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000406341	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000406341	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000407969	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000407969	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000407969	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000407969	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000407969	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000407969	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000302463	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000302463	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000302463	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000302463	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000302463	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000302463	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000488236	ENST00000402198		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000488236	ENST00000402466		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000488236	ENST00000406341		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000488236	ENST00000407969		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3CDS	ENST00000488236	ENST00000302463		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
intron-3UTR	ENST00000488236	ENST00000488236		ChiTaRS3.1			DA530612	SETD5	chr3	9509727	+	SETD5	chr3	9490276	+
3UTR-intron	ENST00000328252	ENST00000263734		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
3UTR-intron	ENST00000328252	ENST00000467888		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000534838	ENST00000263734		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000534838	ENST00000467888		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000483254	ENST00000263734		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000483254	ENST00000467888		ChiTaRS3.1			BI052182	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
3UTR-3CDS	ENST00000252699	ENST00000252699		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
3UTR-3CDS	ENST00000252699	ENST00000424234		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
3UTR-3CDS	ENST00000252699	ENST00000390009		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
3UTR-intron	ENST00000252699	ENST00000497637		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000424234	ENST00000252699		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000424234	ENST00000424234		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000424234	ENST00000390009		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-intron	ENST00000424234	ENST00000497637		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000390009	ENST00000252699		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000390009	ENST00000424234		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000390009	ENST00000390009		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-intron	ENST00000390009	ENST00000497637		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000497637	ENST00000252699		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000497637	ENST00000424234		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3CDS	ENST00000497637	ENST00000390009		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-intron	ENST00000497637	ENST00000497637		ChiTaRS3.1			AA488242	ACTN4	chr19	39220958	+	ACTN4	chr19	39216393	+
intron-3UTR	ENST00000544246	ENST00000539107		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000544246	ENST00000545336		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000544246	ENST00000381256		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000544246	ENST00000381259		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-intron	ENST00000544246	ENST00000540401		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000544246	ENST00000306172		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377865	ENST00000539107		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377865	ENST00000545336		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377865	ENST00000381256		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377865	ENST00000381259		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-intron	ENST00000377865	ENST00000540401		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377865	ENST00000306172		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000456367	ENST00000539107		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000456367	ENST00000545336		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000456367	ENST00000381256		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000456367	ENST00000381259		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-intron	ENST00000456367	ENST00000540401		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000456367	ENST00000306172		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000328454	ENST00000539107		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000328454	ENST00000545336		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000328454	ENST00000381256		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000328454	ENST00000381259		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-intron	ENST00000328454	ENST00000540401		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000328454	ENST00000306172		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377861	ENST00000539107		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377861	ENST00000545336		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377861	ENST00000381256		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377861	ENST00000381259		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-intron	ENST00000377861	ENST00000540401		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
intron-3UTR	ENST00000377861	ENST00000306172		ChiTaRS3.1			BF921132	PCDH9	chr13	67559816	-	CCDC91	chr12	28702312	+
3UTR-3UTR	ENST00000337002	ENST00000337002		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
3UTR-intron	ENST00000337002	ENST00000480708		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
3UTR-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-3UTR	ENST00000480708	ENST00000337002		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000480708	ENST00000480708		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-3UTR	ENST00000470355	ENST00000337002		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000470355	ENST00000480708		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
intron-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			BE763842	SEC62	chr3	169713376	+	SEC62	chr3	169713449	-
3UTR-3UTR	ENST00000341394	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000341394	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000341394	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000341394	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000341394	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-3UTR	ENST00000341394	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000389645	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000389645	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000389645	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000389645	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000389645	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000389645	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000532820	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000532820	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000532820	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000532820	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000532820	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000532820	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000530820	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000530820	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000530820	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000530820	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000530820	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000530820	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000529307	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000529307	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000529307	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000529307	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-intron	ENST00000529307	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3UTR	ENST00000529307	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-3UTR	ENST00000533657	ENST00000341394		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000533657	ENST00000389645		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000533657	ENST00000532820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000533657	ENST00000530820		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-intron	ENST00000533657	ENST00000529307		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
3UTR-3UTR	ENST00000533657	ENST00000533657		ChiTaRS3.1			BQ215232	CAPRIN1	chr11	34122200	-	CAPRIN1	chr11	34122240	+
intron-3CDS	ENST00000469796	ENST00000265138		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-intron	ENST00000469796	ENST00000503192		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-3CDS	ENST00000340800	ENST00000265138		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-intron	ENST00000340800	ENST00000503192		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-3CDS	ENST00000348502	ENST00000265138		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-intron	ENST00000348502	ENST00000503192		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-3CDS	ENST00000504383	ENST00000265138		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-intron	ENST00000504383	ENST00000503192		ChiTaRS3.1			AF116642	ACSL4	chrX	108971287	+	ARRDC3	chr5	90678709	-
intron-intron	ENST00000371927	ENST00000371927		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371927	ENST00000371926		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371927	ENST00000461650		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371927	ENST00000371924		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371927	ENST00000371922		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371926	ENST00000371927		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371926	ENST00000371926		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371926	ENST00000461650		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371926	ENST00000371924		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371926	ENST00000371922		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000461650	ENST00000371927		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000461650	ENST00000371926		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000461650	ENST00000461650		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000461650	ENST00000371924		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000461650	ENST00000371922		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371924	ENST00000371927		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371924	ENST00000371926		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371924	ENST00000461650		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371924	ENST00000371924		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371924	ENST00000371922		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371922	ENST00000371927		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371922	ENST00000371926		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371922	ENST00000461650		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371922	ENST00000371924		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-intron	ENST00000371922	ENST00000371922		ChiTaRS3.1			BU676292	STAMBPL1	chr10	90694899	+	STAMBPL1	chr10	90694990	-
intron-3CDS	ENST00000437538	ENST00000383740		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000437538	ENST00000292309		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000437538	ENST00000450053		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000579315	ENST00000383740		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000579315	ENST00000292309		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000579315	ENST00000450053		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000261652	ENST00000383740		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000261652	ENST00000292309		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000261652	ENST00000450053		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000583789	ENST00000383740		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000583789	ENST00000292309		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000583789	ENST00000450053		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000581616	ENST00000383740		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000581616	ENST00000292309		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-3CDS	ENST00000581616	ENST00000450053		ChiTaRS3.1			BC028072	TNFRSF13B	chr17	16842840	-	NBEAL2	chr3	47049091	+
intron-intron	ENST00000410080	ENST00000216373		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
intron-intron	ENST00000410080	ENST00000543680		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
intron-intron	ENST00000410080	ENST00000555794		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
intron-intron	ENST00000486100	ENST00000216373		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
intron-intron	ENST00000486100	ENST00000543680		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
intron-intron	ENST00000486100	ENST00000555794		ChiTaRS3.1			BE706422	PRPF40A	chr2	153569639	+	SOS2	chr14	50655545	-
Frame-shit	ENST00000550735	ENST00000550735		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
Frame-shit	ENST00000550735	ENST00000551404		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
5CDS-intron	ENST00000550735	ENST00000547305		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
5CDS-intron	ENST00000550735	ENST00000546394		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
Frame-shit	ENST00000551404	ENST00000550735		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
Frame-shit	ENST00000551404	ENST00000551404		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
5CDS-intron	ENST00000551404	ENST00000547305		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
5CDS-intron	ENST00000551404	ENST00000546394		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-3CDS	ENST00000547305	ENST00000550735		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-3CDS	ENST00000547305	ENST00000551404		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-intron	ENST00000547305	ENST00000547305		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-intron	ENST00000547305	ENST00000546394		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-3CDS	ENST00000546394	ENST00000550735		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-3CDS	ENST00000546394	ENST00000551404		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-intron	ENST00000546394	ENST00000547305		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-intron	ENST00000546394	ENST00000546394		ChiTaRS3.1			BU622192	MAPKAPK5	chr12	112326740	-	MAPKAPK5	chr12	112326336	+
intron-3UTR	ENST00000338458	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000338458	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000496106	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000496106	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000498517	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000498517	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000296315	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000296315	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000413728	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000413728	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000497267	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000497267	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-3UTR	ENST00000495373	ENST00000372733		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
intron-intron	ENST00000495373	ENST00000537976		ChiTaRS3.1			AW850072	ARHGEF3	chr3	56819257	+	SDC4	chr20	43954636	-
3UTR-3UTR	ENST00000369005	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000369005	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369005	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000513429	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000513429	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000513429	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000515273	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-intron	ENST00000515273	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000515273	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000515603	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-intron	ENST00000515603	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000515603	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000453444	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-intron	ENST00000453444	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000453444	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000358010	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000358010	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000358010	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000334433	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000334433	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000334433	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369001	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000369001	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369001	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369000	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000369000	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369000	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000360561	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000360561	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000360561	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000368999	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000368999	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000368999	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369004	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000369004	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000369004	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000260733	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-intron	ENST00000260733	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
3UTR-3UTR	ENST00000260733	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000493951	ENST00000320912		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-intron	ENST00000493951	ENST00000507420		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-3UTR	ENST00000493951	ENST00000382581		ChiTaRS3.1			AA232632	TACC2	chr10	124013892	-	MRFAP1	chr4	6644139	-
intron-intron	ENST00000375400	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000413405		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000414457		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000446807		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000423223		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000445521		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000455774		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000430295		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000608994		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000609413		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000537908		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000427063		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000438202		ChiTaRS3.1			BI038432	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375735	ENST00000424085		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000257075		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000373747		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000426105		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000440538		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000373741		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000423018		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000373742		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000375735	ENST00000490546		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000424085		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000257075		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000373747		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000426105		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000440538		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000373741		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000423018		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000373742		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000334267	ENST00000490546		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000424085		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000257075		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000373747		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000426105		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000440538		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000373741		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000423018		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000373742		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-intron	ENST00000398093	ENST00000490546		ChiTaRS3.1			BE147332	DYNC2H1	chr11	103144066	+	PUM1	chr1	31435389	+
intron-3CDS	ENST00000338244	ENST00000338244		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000338244	ENST00000379333		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000338244	ENST00000424750		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-5UTR	ENST00000338244	ENST00000468355		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000379333	ENST00000338244		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000379333	ENST00000379333		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000379333	ENST00000424750		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-5UTR	ENST00000379333	ENST00000468355		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000424750	ENST00000338244		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000424750	ENST00000379333		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000424750	ENST00000424750		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-5UTR	ENST00000424750	ENST00000468355		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000468355	ENST00000338244		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000468355	ENST00000379333		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-3CDS	ENST00000468355	ENST00000424750		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-5UTR	ENST00000468355	ENST00000468355		ChiTaRS3.1			BF923492	SLC23A2	chr20	4880357	+	SLC23A2	chr20	4883171	-
intron-intron	ENST00000309993	ENST00000309993		ChiTaRS3.1			AI190202	MSL2	chr3	135899342	+	MSL2	chr3	135898257	+
intron-intron	ENST00000309993	ENST00000434835		ChiTaRS3.1			AI190202	MSL2	chr3	135899342	+	MSL2	chr3	135898257	+
intron-intron	ENST00000434835	ENST00000309993		ChiTaRS3.1			AI190202	MSL2	chr3	135899342	+	MSL2	chr3	135898257	+
intron-intron	ENST00000434835	ENST00000434835		ChiTaRS3.1			AI190202	MSL2	chr3	135899342	+	MSL2	chr3	135898257	+
intron-3UTR	ENST00000429429	ENST00000429429		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000429429	ENST00000489418		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000429429	ENST00000318386		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-intron	ENST00000429429	ENST00000488267		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000489418	ENST00000429429		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000489418	ENST00000489418		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000489418	ENST00000318386		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-intron	ENST00000489418	ENST00000488267		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000318386	ENST00000429429		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000318386	ENST00000489418		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000318386	ENST00000318386		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-intron	ENST00000318386	ENST00000488267		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000488267	ENST00000429429		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000488267	ENST00000489418		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-3UTR	ENST00000488267	ENST00000318386		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-intron	ENST00000488267	ENST00000488267		ChiTaRS3.1			CD240302	SLBP	chr4	1694653	-	SLBP	chr4	1694786	+
intron-intron	ENST00000372876	ENST00000341056		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000396045		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000310758		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000396040		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000442504		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000448602		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000372876	ENST00000479447		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000341056		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000396045		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000310758		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000396040		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000442504		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000448602		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000244625	ENST00000479447		ChiTaRS3.1			BE349632	TBCC	chr6	42712477	+	ELMO1	chr7	36954372	+
intron-intron	ENST00000355827	ENST00000355827		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000355827	ENST00000373054		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000355827	ENST00000373061		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000355827	ENST00000373049		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000355827	ENST00000324765		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373054	ENST00000355827		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373054	ENST00000373054		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373054	ENST00000373061		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373054	ENST00000373049		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373054	ENST00000324765		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373061	ENST00000355827		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373061	ENST00000373054		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373061	ENST00000373061		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373061	ENST00000373049		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373061	ENST00000324765		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373049	ENST00000355827		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373049	ENST00000373054		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373049	ENST00000373061		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373049	ENST00000373049		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000373049	ENST00000324765		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000324765	ENST00000355827		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000324765	ENST00000373054		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000324765	ENST00000373061		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000324765	ENST00000373049		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
intron-intron	ENST00000324765	ENST00000324765		ChiTaRS3.1			BF997062	DIAPH2	chrX	96452235	-	DIAPH2	chrX	96452929	-
Frame-shit	ENST00000541043	ENST00000541043		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000541043	ENST00000379923		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000541043	ENST00000309951		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000379923	ENST00000541043		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000379923	ENST00000379923		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000379923	ENST00000309951		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000309951	ENST00000541043		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000309951	ENST00000379923		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
Frame-shit	ENST00000309951	ENST00000309951		ChiTaRS3.1			BQ350502	ACO1	chr9	32423408	+	ACO1	chr9	32418128	+
intron-3UTR	ENST00000374586	ENST00000374586		ChiTaRS3.1			BG111802	TMEM245	chr9	111779680	+	TMEM245	chr9	111779644	-
intron-intron	ENST00000355294	ENST00000355294		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-intron	ENST00000355294	ENST00000367117		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-3UTR	ENST00000355294	ENST00000304534		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-3UTR	ENST00000355294	ENST00000491368		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-intron	ENST00000367117	ENST00000355294		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-intron	ENST00000367117	ENST00000367117		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-3UTR	ENST00000367117	ENST00000304534		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-3UTR	ENST00000367117	ENST00000491368		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-intron	ENST00000304534	ENST00000355294		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-intron	ENST00000304534	ENST00000367117		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-3UTR	ENST00000304534	ENST00000304534		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-3UTR	ENST00000304534	ENST00000491368		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-intron	ENST00000491368	ENST00000355294		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-intron	ENST00000491368	ENST00000367117		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-3UTR	ENST00000491368	ENST00000304534		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
3UTR-3UTR	ENST00000491368	ENST00000491368		ChiTaRS3.1			BI907782	RASSF5	chr1	206762080	-	RASSF5	chr1	206762258	+
intron-5UTR	ENST00000380456	ENST00000338415		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000380456	ENST00000537448		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000568628	ENST00000338415		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000568628	ENST00000537448		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000393423	ENST00000338415		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-5UTR	ENST00000393423	ENST00000537448		ChiTaRS3.1			BU162802	RGL3	chr19	11505077	+	QPCT	chr2	37571871	+
intron-3UTR	ENST00000354329	ENST00000354329		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-5UTR	ENST00000354329	ENST00000529578		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000354329	ENST00000533112		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000354329	ENST00000531253		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000354329	ENST00000527372		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000529578	ENST00000354329		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-5UTR	ENST00000529578	ENST00000529578		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000529578	ENST00000533112		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000529578	ENST00000531253		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000529578	ENST00000527372		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000533112	ENST00000354329		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-5UTR	ENST00000533112	ENST00000529578		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000533112	ENST00000533112		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000533112	ENST00000531253		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000533112	ENST00000527372		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000531253	ENST00000354329		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-5UTR	ENST00000531253	ENST00000529578		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000531253	ENST00000533112		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000531253	ENST00000531253		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000531253	ENST00000527372		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000527372	ENST00000354329		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-5UTR	ENST00000527372	ENST00000529578		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000527372	ENST00000533112		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000527372	ENST00000531253		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000527372	ENST00000527372		ChiTaRS3.1			CN268132	MYO18A	chr17	27400802	+	MYO18A	chr17	27400745	-
intron-3UTR	ENST00000346213	ENST00000346213		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000346213	ENST00000393860		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000346213	ENST00000547517		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000393860	ENST00000346213		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000393860	ENST00000393860		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000393860	ENST00000547517		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000547517	ENST00000346213		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000547517	ENST00000393860		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-3UTR	ENST00000547517	ENST00000547517		ChiTaRS3.1			BE083102	RAB5C	chr17	40277283	+	RAB5C	chr17	40277693	-
intron-intron	ENST00000497571	ENST00000497571		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000497571	ENST00000542957		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000497571	ENST00000173785		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000497571	ENST00000469435		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000542957	ENST00000497571		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000542957	ENST00000542957		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000542957	ENST00000173785		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000542957	ENST00000469435		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000173785	ENST00000497571		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000173785	ENST00000542957		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000173785	ENST00000173785		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000173785	ENST00000469435		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000469435	ENST00000497571		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000469435	ENST00000542957		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000469435	ENST00000173785		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-intron	ENST00000469435	ENST00000469435		ChiTaRS3.1			BQ328882	KLF6	chr10	3823852	-	KLF6	chr10	3824512	-
intron-5UTR	ENST00000377967	ENST00000379631		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000377967	ENST00000423210		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000382899	ENST00000379631		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000382899	ENST00000423210		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000536777	ENST00000379631		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000536777	ENST00000423210		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000543216	ENST00000379631		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000543216	ENST00000423210		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000479423	ENST00000379631		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
intron-5UTR	ENST00000479423	ENST00000423210		ChiTaRS3.1			AK122962	KDM6A	chrX	44886962	+	STOML3	chr13	39564970	-
3UTR-intron	ENST00000354725	ENST00000410108		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
3UTR-3UTR	ENST00000354725	ENST00000325147		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
3UTR-3UTR	ENST00000354725	ENST00000382762		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
3UTR-intron	ENST00000354725	ENST00000529614		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
3UTR-intron	ENST00000354725	ENST00000332865		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
3UTR-intron	ENST00000354725	ENST00000486280		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-intron	ENST00000467238	ENST00000410108		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-3UTR	ENST00000467238	ENST00000325147		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-3UTR	ENST00000467238	ENST00000382762		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-intron	ENST00000467238	ENST00000529614		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-intron	ENST00000467238	ENST00000332865		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-intron	ENST00000467238	ENST00000486280		ChiTaRS3.1			AI914532	SND1	chr7	127732510	-	BET1L	chr11	204140	+
intron-3UTR	ENST00000297151	ENST00000297151		ChiTaRS3.1			BI333542	SLU7	chr5	159830257	+	SLU7	chr5	159830243	-
intron-3CDS	ENST00000485761	ENST00000309007		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000292385		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000393565		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000393563		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000512501		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000309007		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000292385		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000393565		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000393563		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000512501		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000309007		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000292385		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000393565		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000393563		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000512501		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000309007		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000292385		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000393565		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000393563		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000512501		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000309007		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000292385		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000393565		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000393563		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000512501		ChiTaRS3.1			AW351462	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-intron	ENST00000381809	ENST00000066544		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000381809	ENST00000531206		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000381809	ENST00000446365		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000381809	ENST00000527547		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000381809	ENST00000528748		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000359883	ENST00000066544		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000359883	ENST00000531206		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000359883	ENST00000446365		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000359883	ENST00000527547		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000359883	ENST00000528748		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000447596	ENST00000066544		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000447596	ENST00000531206		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000447596	ENST00000446365		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000447596	ENST00000527547		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000447596	ENST00000528748		ChiTaRS3.1			AW803562	AK3	chr9	4712055	+	CDC27	chr17	45204684	-
intron-intron	ENST00000437508	ENST00000437508		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-intron	ENST00000437508	ENST00000494872		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-3UTR	ENST00000437508	ENST00000338700		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-intron	ENST00000494872	ENST00000437508		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-intron	ENST00000494872	ENST00000494872		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-3UTR	ENST00000494872	ENST00000338700		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
3UTR-intron	ENST00000338700	ENST00000437508		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
3UTR-intron	ENST00000338700	ENST00000494872		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
3UTR-3UTR	ENST00000338700	ENST00000338700		ChiTaRS3.1			CB243962	TRIM2	chr4	154260358	-	TRIM2	chr4	154260210	+
intron-3CDS	ENST00000574590	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000574590	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000574590	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000574590	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000574590	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000574590	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000574590	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000575318	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000575318	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000575318	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000575318	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000575318	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000575318	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000575318	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000572904	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000572904	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000572904	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000572904	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000572904	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000572904	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000572904	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000262419	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000262419	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000262419	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000262419	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000262419	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000262419	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000262419	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000432791	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000432791	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000432791	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000432791	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000432791	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000432791	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000432791	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000393476	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000393476	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000393476	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000393476	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000393476	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000393476	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000393476	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000576248	ENST00000574590		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000576248	ENST00000575318		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000576248	ENST00000572904		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000576248	ENST00000262419		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-3CDS	ENST00000576248	ENST00000432791		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-5UTR	ENST00000576248	ENST00000393476		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
intron-intron	ENST00000576248	ENST00000576248		ChiTaRS3.1			AL042692	KANSL1	chr17	44248514	-	KANSL1	chr17	44248592	+
3UTR-3UTR	ENST00000544024	ENST00000544024		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000544024	ENST00000423955		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000544024	ENST00000293525		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000423955	ENST00000544024		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000423955	ENST00000423955		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000423955	ENST00000293525		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000293525	ENST00000544024		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000293525	ENST00000423955		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
3UTR-3UTR	ENST00000293525	ENST00000293525		ChiTaRS3.1			AA393572	KRT86	chr12	52702412	-	KRT86	chr12	52702552	+
intron-intron	ENST00000544600	ENST00000367094		ChiTaRS3.1			BQ351152	RHCG	chr15	90016359	+	TULP4	chr6	158915672	+
intron-intron	ENST00000544600	ENST00000367097		ChiTaRS3.1			BQ351152	RHCG	chr15	90016359	+	TULP4	chr6	158915672	+
intron-intron	ENST00000268122	ENST00000367094		ChiTaRS3.1			BQ351152	RHCG	chr15	90016359	+	TULP4	chr6	158915672	+
intron-intron	ENST00000268122	ENST00000367097		ChiTaRS3.1			BQ351152	RHCG	chr15	90016359	+	TULP4	chr6	158915672	+
intron-intron	ENST00000568630	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-intron	ENST00000568630	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000545763	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000389936	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000219905	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000566586	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000568630		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000545763		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000389936		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000219905		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000566586		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
3UTR-intron	ENST00000570161	ENST00000570161		ChiTaRS3.1			AV751072	MGA	chr15	42060165	+	MGA	chr15	42040931	+
intron-3CDS	ENST00000371068	ENST00000240123		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000371068	ENST00000523402		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000371068	ENST00000523740		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000371068	ENST00000428103		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-3CDS	ENST00000491749	ENST00000240123		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000491749	ENST00000523402		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000491749	ENST00000523740		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000491749	ENST00000428103		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-3CDS	ENST00000433625	ENST00000240123		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000433625	ENST00000523402		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000433625	ENST00000523740		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000433625	ENST00000428103		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-3CDS	ENST00000538167	ENST00000240123		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000538167	ENST00000523402		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000538167	ENST00000523740		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
intron-intron	ENST00000538167	ENST00000428103		ChiTaRS3.1			BI869012	EFHC1	chr6	52367933	-	SORBS3	chr8	22432191	+
3UTR-3CDS	ENST00000246533	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000246533	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000246533	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000246533	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000246533	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000246533	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-3CDS	ENST00000589146	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000589146	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000589146	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000589146	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000589146	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000589146	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-3CDS	ENST00000587718	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000587718	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000587718	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000587718	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000587718	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000587718	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-3CDS	ENST00000590874	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000590874	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000590874	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000590874	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000590874	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000590874	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-3CDS	ENST00000588815	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000588815	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000588815	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000588815	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000588815	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
3UTR-intron	ENST00000588815	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-3CDS	ENST00000588780	ENST00000246533		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000588780	ENST00000589146		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000588780	ENST00000587718		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000588780	ENST00000590874		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000588780	ENST00000588815		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
intron-intron	ENST00000588780	ENST00000588780		ChiTaRS3.1			AW405342	CAPNS1	chr19	36640961	+	CAPNS1	chr19	36633620	+
5CDS-5UTR	ENST00000322776	ENST00000322776		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000322776	ENST00000532303		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000322776	ENST00000529927		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000322776	ENST00000415352		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-intron	ENST00000322776	ENST00000526169		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000532303	ENST00000322776		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000532303	ENST00000532303		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000532303	ENST00000529927		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000532303	ENST00000415352		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-intron	ENST00000532303	ENST00000526169		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000529927	ENST00000322776		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000529927	ENST00000532303		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000529927	ENST00000529927		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000529927	ENST00000415352		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-intron	ENST00000529927	ENST00000526169		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000415352	ENST00000322776		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000415352	ENST00000532303		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000415352	ENST00000529927		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-5UTR	ENST00000415352	ENST00000415352		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
5CDS-intron	ENST00000415352	ENST00000526169		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
3UTR-5UTR	ENST00000526169	ENST00000322776		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
3UTR-5UTR	ENST00000526169	ENST00000532303		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
3UTR-5UTR	ENST00000526169	ENST00000529927		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
3UTR-5UTR	ENST00000526169	ENST00000415352		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
3UTR-intron	ENST00000526169	ENST00000526169		ChiTaRS3.1			BP193532	NDUFV1	chr11	67377003	+	NDUFV1	chr11	67374411	+
intron-intron	ENST00000310380	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000310380	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000310380	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000310380	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000310380	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000310380	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000437101	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000429994	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000355729	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000460582	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000310380		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000437101		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000429994		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000355729		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000460582		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-intron	ENST00000356740	ENST00000356740		ChiTaRS3.1			BF946762	XXYLT1	chr3	194975962	+	XXYLT1	chr3	194976663	-
intron-3UTR	ENST00000457030	ENST00000288561		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000457030	ENST00000473989		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000330010	ENST00000288561		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000330010	ENST00000473989		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000294624	ENST00000288561		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000294624	ENST00000473989		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000334785	ENST00000288561		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000334785	ENST00000473989		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000480732	ENST00000288561		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-3UTR	ENST00000480732	ENST00000473989		ChiTaRS3.1			BX470812	NEXN	chr1	78356582	-	UBN2	chr7	138989462	+
intron-5UTR	ENST00000599539	ENST00000221801		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-intron	ENST00000599539	ENST00000593503		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-5UTR	ENST00000339471	ENST00000221801		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-intron	ENST00000339471	ENST00000593503		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-5UTR	ENST00000251453	ENST00000221801		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-intron	ENST00000251453	ENST00000593503		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-5UTR	ENST00000601655	ENST00000221801		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
intron-intron	ENST00000601655	ENST00000593503		ChiTaRS3.1			BE904292	RPS16	chr19	39926575	+	FBL	chr19	40337034	-
3UTR-3CDS	ENST00000366577	ENST00000424120		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-3CDS	ENST00000366577	ENST00000413206		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-3CDS	ENST00000366577	ENST00000503292		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-3CDS	ENST00000366577	ENST00000389652		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-intron	ENST00000366577	ENST00000438599		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-intron	ENST00000366577	ENST00000511544		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-3UTR	ENST00000366577	ENST00000513811		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-intron	ENST00000366577	ENST00000507954		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-intron	ENST00000366577	ENST00000515124		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
3UTR-intron	ENST00000366577	ENST00000503658		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000418145	ENST00000424120		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000418145	ENST00000413206		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000418145	ENST00000503292		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000418145	ENST00000389652		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000418145	ENST00000438599		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000418145	ENST00000511544		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3UTR	ENST00000418145	ENST00000513811		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000418145	ENST00000507954		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000418145	ENST00000515124		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000418145	ENST00000503658		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000535889	ENST00000424120		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000535889	ENST00000413206		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000535889	ENST00000503292		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000535889	ENST00000389652		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000535889	ENST00000438599		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000535889	ENST00000511544		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3UTR	ENST00000535889	ENST00000513811		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000535889	ENST00000507954		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000535889	ENST00000515124		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000535889	ENST00000503658		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000470570	ENST00000424120		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000470570	ENST00000413206		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000470570	ENST00000503292		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3CDS	ENST00000470570	ENST00000389652		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000470570	ENST00000438599		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000470570	ENST00000511544		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-3UTR	ENST00000470570	ENST00000513811		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000470570	ENST00000507954		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000470570	ENST00000515124		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000470570	ENST00000503658		ChiTaRS3.1			BE767082	MTR	chr1	237064437	-	CC2D2A	chr4	15512966	-
intron-intron	ENST00000393432	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000393432	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000393432	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000393432	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000393432	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000393432	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000393432	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000442819	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000442819	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000356731	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000356731	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000329433	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000329433	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000510411	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000510411	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000511300	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000511300	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000393432		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000442819		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000356731		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000329433		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000510411		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-intron	ENST00000524180	ENST00000511300		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000524180	ENST00000524180		ChiTaRS3.1			CV574692	HNRNPH1	chr5	179046626	+	HNRNPH1	chr5	179046566	-
intron-5UTR	ENST00000299424	ENST00000371471		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-intron	ENST00000299424	ENST00000302342		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-5UTR	ENST00000299424	ENST00000540425		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-5UTR	ENST00000531760	ENST00000371471		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-intron	ENST00000531760	ENST00000302342		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-5UTR	ENST00000531760	ENST00000540425		ChiTaRS3.1			DB067912	TAF10	chr11	6632314	+	ZNF217	chr20	52199707	-
intron-3CDS	ENST00000375050	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000453487	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000549520	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000551389	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000549406	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000453961	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000553136	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000547363	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000552094	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000420432	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000553184	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000550085	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000383270	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000551651	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000546984	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000550532	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000431537	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000549894	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000548572	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000546976	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000433552	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000550227	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000549969	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3CDS	ENST00000548776	ENST00000390237		ChiTaRS3.1			BF868802	PBX2	chr6	3504782	+	IGKC	chr2	89157153	-
intron-3UTR	ENST00000348165	ENST00000227507		ChiTaRS3.1			BF736662	UBE3C	chr7	157036030	+	CCND1	chr11	69467979	+
intron-intron	ENST00000348165	ENST00000536559		ChiTaRS3.1			BF736662	UBE3C	chr7	157036030	+	CCND1	chr11	69467979	+
intron-3UTR	ENST00000389103	ENST00000227507		ChiTaRS3.1			BF736662	UBE3C	chr7	157036030	+	CCND1	chr11	69467979	+
intron-intron	ENST00000389103	ENST00000536559		ChiTaRS3.1			BF736662	UBE3C	chr7	157036030	+	CCND1	chr11	69467979	+
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM949722	KMT2A	chr11	118355863	+	MLLT1	chr19	6277299	-
intron-3CDS	ENST00000216951	ENST00000257570		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000216951	ENST00000339275		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000257570		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000339275		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000257570		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000339275		ChiTaRS3.1			AW849012	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-5UTR	ENST00000335351	ENST00000438552		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000381342		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000339610		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000438552		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000381342		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000339610		ChiTaRS3.1			BG472482	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
3UTR-3UTR	ENST00000266546	ENST00000249396		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000266546	ENST00000392081		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000266546	ENST00000358931		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-intron	ENST00000266546	ENST00000481381		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000537408	ENST00000249396		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000537408	ENST00000392081		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000537408	ENST00000358931		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-intron	ENST00000537408	ENST00000481381		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000331148	ENST00000249396		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000331148	ENST00000392081		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-3UTR	ENST00000331148	ENST00000358931		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
3UTR-intron	ENST00000331148	ENST00000481381		ChiTaRS3.1			BE703262	CLSTN3	chr12	7310722	-	SIRT2	chr19	39369581	+
intron-3CDS	ENST00000419488	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000419488	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000419488	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000419488	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000354212	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000354212	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000354212	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000522391	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000522391	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000522391	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000536571	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-intron	ENST00000536571	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-intron	ENST00000536571	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-3CDS	ENST00000535697	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-intron	ENST00000535697	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
5UTR-intron	ENST00000535697	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000466387		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000496558		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000361291		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000402739		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000540488		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000541047		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000517762	ENST00000343114		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000517762	ENST00000496251		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-intron	ENST00000517762	ENST00000409266		ChiTaRS3.1			DA202182	MAGI2	chr7	78400167	-	CTNNA2	chr2	80620333	+
intron-3CDS	ENST00000381556	ENST00000258484		ChiTaRS3.1			BQ371062	MYBBP1A	chr17	4457386	+	EPC2	chr2	149539311	+
intron-intron	ENST00000381556	ENST00000409654		ChiTaRS3.1			BQ371062	MYBBP1A	chr17	4457386	+	EPC2	chr2	149539311	+
intron-3CDS	ENST00000254718	ENST00000258484		ChiTaRS3.1			BQ371062	MYBBP1A	chr17	4457386	+	EPC2	chr2	149539311	+
intron-intron	ENST00000254718	ENST00000409654		ChiTaRS3.1			BQ371062	MYBBP1A	chr17	4457386	+	EPC2	chr2	149539311	+
intron-intron	ENST00000281924	ENST00000281924		ChiTaRS3.1			BI050382	TMEM163	chr2	135223466	+	TMEM163	chr2	135223126	-
5CDS-intron	ENST00000233114	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000233114	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409908	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000409476	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000539945	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000544381	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
5CDS-intron	ENST00000394423	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000435085		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000307198		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000419228		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000447974		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000289488		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000539271		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000423494		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000539587		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000538478		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000324866		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000439209		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000541614		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000536917		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
intron-intron	ENST00000462944	ENST00000440313		ChiTaRS3.1			BE709622	MDH1	chr2	63831845	-	LRTOMT	chr11	71796626	-
3UTR-intron	ENST00000258080	ENST00000563392		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000570055		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000563206		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000451014		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000568625		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000288071		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000393657		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000258080	ENST00000355992		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000563392		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000570055		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000563206		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000451014		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000568625		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000288071		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000393657		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000467961	ENST00000355992		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000563392		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000570055		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000563206		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000451014		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000568625		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000288071		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000393657		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
3UTR-intron	ENST00000352222	ENST00000355992		ChiTaRS3.1			AW044242	HTRA2	chr2	74760410	-	DDX19B	chr16	70406555	-
intron-intron	ENST00000520686	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520686	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521988	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000537541	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000518748	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000523580	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000520430	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517858	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000517540	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000378861	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524037	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000521617	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519069	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000524107	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000520686		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000521988		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000537541		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000518748		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000523580		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000520430		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000517858		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000517540		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000378861		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000524037		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000521617		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000519069		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000524107		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000519969	ENST00000519969		ChiTaRS3.1			CV326862	TRIQK	chr8	93959288	-	TRIQK	chr8	93959547	-
intron-intron	ENST00000281928	ENST00000281928		ChiTaRS3.1			AA502152	MED13L	chr12	116441537	-	MED13L	chr12	116441733	+
intron-intron	ENST00000281928	ENST00000551197		ChiTaRS3.1			AA502152	MED13L	chr12	116441537	-	MED13L	chr12	116441733	+
intron-intron	ENST00000551197	ENST00000281928		ChiTaRS3.1			AA502152	MED13L	chr12	116441537	-	MED13L	chr12	116441733	+
intron-intron	ENST00000551197	ENST00000551197		ChiTaRS3.1			AA502152	MED13L	chr12	116441537	-	MED13L	chr12	116441733	+
5CDS-intron	ENST00000543245	ENST00000399506		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000543245	ENST00000302955		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000543245	ENST00000399510		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000543245	ENST00000485100		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000356839	ENST00000399506		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000356839	ENST00000302955		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000356839	ENST00000399510		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000356839	ENST00000485100		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000350303	ENST00000399506		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000350303	ENST00000302955		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000350303	ENST00000399510		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
5CDS-intron	ENST00000350303	ENST00000485100		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
intron-intron	ENST00000581562	ENST00000399506		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
intron-intron	ENST00000581562	ENST00000302955		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
intron-intron	ENST00000581562	ENST00000399510		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
intron-intron	ENST00000581562	ENST00000485100		ChiTaRS3.1			AV751942	ACADVL	chr17	7127691	+	DLG4	chr17	7123299	+
intron-intron	ENST00000411986	ENST00000411986		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000411986	ENST00000464926		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000411986	ENST00000370938		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000411986	ENST00000346806		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000464926	ENST00000411986		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000464926	ENST00000464926		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000464926	ENST00000370938		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000464926	ENST00000346806		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000370938	ENST00000411986		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000370938	ENST00000464926		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000370938	ENST00000370938		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000370938	ENST00000346806		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000346806	ENST00000411986		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000346806	ENST00000464926		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000346806	ENST00000370938		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000346806	ENST00000346806		ChiTaRS3.1			BX106222	CTH	chr1	70879230	-	CTH	chr1	70879919	-
intron-intron	ENST00000357613	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000357613	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569540	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000561878	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000567796	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000566980	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000356316		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000318023		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000357568		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000349748		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000397163		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000397200		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000337571		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000569136		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000561817		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000397204		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000569276	ENST00000562199		ChiTaRS3.1			AA358992	TMEM170A	chr16	75487777	-	CAPN3	chr15	42651101	+
intron-intron	ENST00000339561	ENST00000339561		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000185206		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000544153		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000486570		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000339561		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000185206		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000544153		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000486570		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000339561		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000185206		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000544153		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000486570		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000339561		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000185206		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000544153		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000486570		ChiTaRS3.1			BI056842	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000427025	ENST00000380320		ChiTaRS3.1			CA421108	NHSL1	chr6	138839641	+	EMILIN1	chr2	27309271	-
intron-intron	ENST00000343505	ENST00000380320		ChiTaRS3.1			CA421108	NHSL1	chr6	138839641	+	EMILIN1	chr2	27309271	-
intron-intron	ENST00000479393	ENST00000380320		ChiTaRS3.1			CA421108	NHSL1	chr6	138839641	+	EMILIN1	chr2	27309271	-
3UTR-3UTR	ENST00000292114	ENST00000292114		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
3UTR-intron	ENST00000292114	ENST00000509083		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
3UTR-intron	ENST00000292114	ENST00000581386		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
3UTR-intron	ENST00000292114	ENST00000395404		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-3UTR	ENST00000509083	ENST00000292114		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000509083	ENST00000509083		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000509083	ENST00000581386		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000509083	ENST00000395404		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-3UTR	ENST00000581386	ENST00000292114		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000581386	ENST00000509083		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000581386	ENST00000581386		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000581386	ENST00000395404		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-3UTR	ENST00000395404	ENST00000292114		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000395404	ENST00000509083		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000395404	ENST00000581386		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
intron-intron	ENST00000395404	ENST00000395404		ChiTaRS3.1			BU675842	TMEM199	chr17	26688950	-	TMEM199	chr17	26688832	+
3UTR-3UTR	ENST00000272167	ENST00000284262		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
3UTR-3UTR	ENST00000272167	ENST00000563609		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
3UTR-3UTR	ENST00000366837	ENST00000284262		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
3UTR-3UTR	ENST00000366837	ENST00000563609		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
intron-3UTR	ENST00000467015	ENST00000284262		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
intron-3UTR	ENST00000467015	ENST00000563609		ChiTaRS3.1			AI933022	EPHX1	chr1	226033081	-	JPH3	chr16	87731294	-
intron-intron	ENST00000334047	ENST00000235307		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-intron	ENST00000334047	ENST00000367514		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-intron	ENST00000370207	ENST00000235307		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-intron	ENST00000370207	ENST00000367514		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-intron	ENST00000480356	ENST00000235307		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-intron	ENST00000480356	ENST00000367514		ChiTaRS3.1			AI624522	F3	chr1	94999474	+	C1orf21	chr1	184484981	-
intron-3CDS	ENST00000607838	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000607838	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000591724	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000591724	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000332065	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000332065	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000589210	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000589210	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000335146	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000335146	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000467929	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000467929	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000405575	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000405575	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000411744	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000411744	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000406660	ENST00000336273		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000406660	ENST00000519934		ChiTaRS3.1			CR736942	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911372	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911372	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911372	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911372	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
5UTR-5UTR	ENST00000448504	ENST00000448504		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
5UTR-intron	ENST00000448504	ENST00000452479		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
5UTR-intron	ENST00000448504	ENST00000582154		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-5UTR	ENST00000452479	ENST00000448504		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-intron	ENST00000452479	ENST00000452479		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-intron	ENST00000452479	ENST00000582154		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-5UTR	ENST00000582154	ENST00000448504		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-intron	ENST00000582154	ENST00000452479		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
intron-intron	ENST00000582154	ENST00000582154		ChiTaRS3.1			BF333842	ARSG	chr17	66303372	-	ARSG	chr17	66303503	+
3UTR-3UTR	ENST00000394670	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
3UTR-intron	ENST00000394670	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000321233	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000321233	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000394673	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000394673	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000341711	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000341711	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000342555	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000342555	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000577908	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000577908	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000584416	ENST00000394670		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000321233		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000394673		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000341711		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000342555		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000577908		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-intron	ENST00000584416	ENST00000584416		ChiTaRS3.1			BX474682	ZNF207	chr17	30701068	+	ZNF207	chr17	30698578	+
intron-3UTR	ENST00000379170	ENST00000379170		ChiTaRS3.1			BQ215742	MCUR1	chr6	13787615	+	MCUR1	chr6	13787550	-
intron-intron	ENST00000379170	ENST00000359495		ChiTaRS3.1			BQ215742	MCUR1	chr6	13787615	+	MCUR1	chr6	13787550	-
intron-3UTR	ENST00000359495	ENST00000379170		ChiTaRS3.1			BQ215742	MCUR1	chr6	13787615	+	MCUR1	chr6	13787550	-
intron-intron	ENST00000359495	ENST00000359495		ChiTaRS3.1			BQ215742	MCUR1	chr6	13787615	+	MCUR1	chr6	13787550	-
intron-3UTR	ENST00000512215	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000512215	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000512215	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000512215	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000512215	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000512215	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000512215	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394854	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394854	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394854	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394854	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394854	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000394854	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000394854	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000323055	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000323055	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000323055	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000323055	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000323055	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000323055	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000323055	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394853	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394853	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394853	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394853	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000394853	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000394853	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000394853	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000507176	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000507176	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000507176	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000507176	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000507176	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000507176	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000507176	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000523694	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000523694	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000523694	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000523694	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000523694	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000523694	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000523694	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000510292	ENST00000512215		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000510292	ENST00000394854		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000510292	ENST00000323055		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000510292	ENST00000394853		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-3UTR	ENST00000510292	ENST00000507176		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000510292	ENST00000523694		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
intron-intron	ENST00000510292	ENST00000510292		ChiTaRS3.1			CA312092	PPP3CA	chr4	101946816	+	PPP3CA	chr4	101946763	-
Frame-shit	ENST00000469224	ENST00000469224		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000469224	ENST00000394965		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000469224	ENST00000310271		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000469224	ENST00000484952		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000394965	ENST00000469224		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000394965	ENST00000394965		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000394965	ENST00000310271		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000394965	ENST00000484952		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000310271	ENST00000469224		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000310271	ENST00000394965		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000310271	ENST00000310271		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
Frame-shit	ENST00000310271	ENST00000484952		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
In-frame	ENST00000484952	ENST00000469224		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
In-frame	ENST00000484952	ENST00000394965		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
In-frame	ENST00000484952	ENST00000310271		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
In-frame	ENST00000484952	ENST00000484952		ChiTaRS3.1			CN258752	ALAS1	chr3	52248062	-	ALAS1	chr3	52245549	+
3UTR-3UTR	ENST00000337002	ENST00000337002		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
3UTR-3UTR	ENST00000337002	ENST00000480708		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
3UTR-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-3UTR	ENST00000480708	ENST00000337002		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-3UTR	ENST00000480708	ENST00000480708		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-3UTR	ENST00000470355	ENST00000337002		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-3UTR	ENST00000470355	ENST00000480708		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			BU608812	SEC62	chr3	169712136	-	SEC62	chr3	169711530	+
intron-3UTR	ENST00000448100	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000448100	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000355969	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000355969	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000357119	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000357119	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000369967	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000369967	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000328969	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000328969	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000478385	ENST00000378116		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-intron	ENST00000478385	ENST00000477161		ChiTaRS3.1			BF803702	ZGPAT	chr20	62365353	-	FAM171A1	chr10	15254180	-
intron-3UTR	ENST00000445105	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000445105	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000445105	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000445105	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000445105	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000445105	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000264730	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000264730	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000264730	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000264730	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000264730	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000264730	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000454309	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000454309	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000454309	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000454309	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000454309	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000454309	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000450716	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000450716	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000450716	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000450716	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000450716	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000450716	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000430714	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000430714	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000430714	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000430714	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000430714	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000430714	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000466144	ENST00000370010		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000466144	ENST00000370014		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000466144	ENST00000447266		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-3UTR	ENST00000466144	ENST00000541192		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000466144	ENST00000327284		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
intron-intron	ENST00000466144	ENST00000436928		ChiTaRS3.1			AA678812	FGF12	chr3	192120891	+	SENP6	chr6	76425446	+
In-frame	ENST00000318522	ENST00000389048		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
In-frame	ENST00000402711	ENST00000389048		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000482660	ENST00000389048		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
In-frame	ENST00000401738	ENST00000389048		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-3CDS	ENST00000453191	ENST00000389048		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			AB274722	EML4	chr2	42522660	+	ALK	chr2	29446396	-
intron-intron	ENST00000400473	ENST00000400473		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-3UTR	ENST00000400473	ENST00000256925		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-intron	ENST00000400473	ENST00000585061		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-3UTR	ENST00000400473	ENST00000420687		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-intron	ENST00000256925	ENST00000400473		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-3UTR	ENST00000256925	ENST00000256925		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-intron	ENST00000256925	ENST00000585061		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-3UTR	ENST00000256925	ENST00000420687		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-intron	ENST00000585061	ENST00000400473		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-3UTR	ENST00000585061	ENST00000256925		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-intron	ENST00000585061	ENST00000585061		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-3UTR	ENST00000585061	ENST00000420687		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-intron	ENST00000420687	ENST00000400473		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-3UTR	ENST00000420687	ENST00000256925		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-intron	ENST00000420687	ENST00000585061		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
3UTR-3UTR	ENST00000420687	ENST00000420687		ChiTaRS3.1			AA678912	CABLES1	chr18	20838322	-	CABLES1	chr18	20838272	+
intron-intron	ENST00000370056	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000370056	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000370056	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000370056	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000370056	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000370056	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000527011	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000544443	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000415432	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000343258	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000370056		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000527011		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000544443		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000415432		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000343258		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-intron	ENST00000371846	ENST00000371846		ChiTaRS3.1			BF367142	VAV3	chr1	108129691	+	VAV3	chr1	108128565	+
intron-3UTR	ENST00000357731	ENST00000466764		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000357731	ENST00000376759		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000357731	ENST00000430348		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000357731	ENST00000376755		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000357731	ENST00000354480		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000306821	ENST00000466764		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000306821	ENST00000376759		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000306821	ENST00000430348		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000306821	ENST00000376755		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000306821	ENST00000354480		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000434200	ENST00000466764		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000434200	ENST00000376759		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000434200	ENST00000430348		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000434200	ENST00000376755		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000434200	ENST00000354480		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000467479	ENST00000466764		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000467479	ENST00000376759		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000467479	ENST00000430348		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000467479	ENST00000376755		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
intron-3UTR	ENST00000467479	ENST00000354480		ChiTaRS3.1			AY358132	NEGR1	chr1	71872026	-	RBM3	chrX	48434920	+
3UTR-intron	ENST00000266544	ENST00000426057		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
3UTR-intron	ENST00000266544	ENST00000355180		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
3UTR-intron	ENST00000266544	ENST00000513104		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
3UTR-intron	ENST00000266544	ENST00000514282		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
intron-intron	ENST00000542369	ENST00000426057		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
intron-intron	ENST00000542369	ENST00000355180		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
intron-intron	ENST00000542369	ENST00000513104		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
intron-intron	ENST00000542369	ENST00000514282		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
5CDS-intron	ENST00000540688	ENST00000426057		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
5CDS-intron	ENST00000540688	ENST00000355180		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
5CDS-intron	ENST00000540688	ENST00000513104		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
5CDS-intron	ENST00000540688	ENST00000514282		ChiTaRS3.1			AJ711522	NDUFA9	chr12	4796399	+	TRPC7	chr5	135585234	-
intron-intron	ENST00000395715	ENST00000371687		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000395715	ENST00000543648		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000395715	ENST00000490164		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000395715	ENST00000336126		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000220888	ENST00000371687		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000220888	ENST00000543648		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000220888	ENST00000490164		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000220888	ENST00000336126		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519076	ENST00000371687		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519076	ENST00000543648		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519076	ENST00000490164		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519076	ENST00000336126		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000520276	ENST00000371687		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000520276	ENST00000543648		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000520276	ENST00000490164		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000520276	ENST00000336126		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519674	ENST00000371687		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519674	ENST00000543648		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519674	ENST00000490164		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-intron	ENST00000519674	ENST00000336126		ChiTaRS3.1			BF329822	TRPS1	chr8	116454627	+	PCGF5	chr10	93002873	+
intron-3UTR	ENST00000378564	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000378564	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000378564	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000321584	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000321584	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000321584	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000321603	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000321603	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000321603	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-3UTR	ENST00000342854	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000342854	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000342854	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-3UTR	ENST00000395029	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000395029	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000395029	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000432532	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000432532	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000432532	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-3UTR	ENST00000378560	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000378560	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000378560	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000520958	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000520958	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000520958	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000518915	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000518915	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000518915	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-3UTR	ENST00000395023	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000395023	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
3UTR-intron	ENST00000395023	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-3UTR	ENST00000517478	ENST00000367612		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000517478	ENST00000609928		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000517478	ENST00000482587		ChiTaRS3.1			BF669592	TCF7	chr5	133483371	+	TOR1AIP2	chr1	179811083	-
intron-intron	ENST00000368301	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368301	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368301	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368301	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000361308	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000361308	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000361308	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000361308	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
5CDS-intron	ENST00000347559	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
5CDS-intron	ENST00000347559	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
5CDS-intron	ENST00000347559	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
5CDS-intron	ENST00000347559	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
3UTR-intron	ENST00000368300	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
3UTR-intron	ENST00000368300	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
3UTR-intron	ENST00000368300	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
3UTR-intron	ENST00000368300	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368299	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368299	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368299	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368299	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000448611	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000448611	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000448611	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000448611	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368297	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368297	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368297	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000368297	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000473598	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000473598	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000473598	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000473598	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000392353	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000392353	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000392353	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000392353	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000496738	ENST00000330430		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000496738	ENST00000371374		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000496738	ENST00000306764		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-intron	ENST00000496738	ENST00000405162		ChiTaRS3.1			CD244832	LMNA	chr1	156109872	+	RCAN2	chr6	46231461	+
intron-3UTR	ENST00000343245	ENST00000345496		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000343245	ENST00000477954		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000343245	ENST00000330942		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-3UTR	ENST00000369070	ENST00000345496		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000369070	ENST00000477954		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000369070	ENST00000330942		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-3UTR	ENST00000369076	ENST00000345496		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000369076	ENST00000477954		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000369076	ENST00000330942		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-3UTR	ENST00000360666	ENST00000345496		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000360666	ENST00000477954		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000360666	ENST00000330942		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-3UTR	ENST00000475645	ENST00000345496		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000475645	ENST00000477954		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
intron-intron	ENST00000475645	ENST00000330942		ChiTaRS3.1			AL355682	ATG5	chr6	106659606	-	UBE2G2	chr21	46189333	-
3UTR-3UTR	ENST00000577702	ENST00000577702		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
3UTR-3UTR	ENST00000577702	ENST00000310827		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
3UTR-intron	ENST00000577702	ENST00000431926		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
3UTR-intron	ENST00000577702	ENST00000415273		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-3UTR	ENST00000310827	ENST00000577702		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-3UTR	ENST00000310827	ENST00000310827		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-intron	ENST00000310827	ENST00000431926		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-intron	ENST00000310827	ENST00000415273		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
intron-3UTR	ENST00000431926	ENST00000577702		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
intron-3UTR	ENST00000431926	ENST00000310827		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
intron-intron	ENST00000431926	ENST00000431926		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
intron-intron	ENST00000431926	ENST00000415273		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-3UTR	ENST00000415273	ENST00000577702		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-3UTR	ENST00000415273	ENST00000310827		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-intron	ENST00000415273	ENST00000431926		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
5CDS-intron	ENST00000415273	ENST00000415273		ChiTaRS3.1			AL121172	DCAF7	chr17	61666465	+	DCAF7	chr17	61662605	-
3UTR-3CDS	ENST00000330263	ENST00000367064		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3CDS	ENST00000330263	ENST00000367063		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3CDS	ENST00000330263	ENST00000391921		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000367067		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000314754		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000391920		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000367062		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000367065		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
3UTR-3UTR	ENST00000330263	ENST00000465534		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3CDS	ENST00000493700	ENST00000367064		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3CDS	ENST00000493700	ENST00000367063		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3CDS	ENST00000493700	ENST00000391921		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000367067		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000314754		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000391920		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000367062		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000367065		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
intron-3UTR	ENST00000493700	ENST00000465534		ChiTaRS3.1			CB160252	MRTO4	chr1	19586543	-	CD55	chr1	207510065	-
5CDS-intron	ENST00000323848	ENST00000377060		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000323848	ENST00000305510		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000323848	ENST00000480035		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000447431	ENST00000377060		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000447431	ENST00000305510		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000447431	ENST00000480035		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000374389	ENST00000377060		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000374389	ENST00000305510		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
5CDS-intron	ENST00000374389	ENST00000480035		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
3UTR-intron	ENST00000479034	ENST00000377060		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
3UTR-intron	ENST00000479034	ENST00000305510		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
3UTR-intron	ENST00000479034	ENST00000480035		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
intron-intron	ENST00000537199	ENST00000377060		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
intron-intron	ENST00000537199	ENST00000305510		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
intron-intron	ENST00000537199	ENST00000480035		ChiTaRS3.1			BF757512	SRRM1	chr1	24996784	+	CNNM3	chr2	97495900	-
intron-intron	ENST00000293217	ENST00000287878		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000293217	ENST00000418337		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000293217	ENST00000433631		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000293217	ENST00000492843		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000293217	ENST00000392801		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000293217	ENST00000461529		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000287878		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000418337		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000433631		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000492843		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000392801		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000537812	ENST00000461529		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000287878		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000418337		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000433631		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000492843		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000392801		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000301608	ENST00000461529		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000287878		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000418337		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000433631		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000492843		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000392801		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
intron-intron	ENST00000591857	ENST00000461529		ChiTaRS3.1			AI766782	ACOX1	chr17	73939119	+	PRKAG2	chr7	151352004	+
5CDS-3UTR	ENST00000538546	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-intron	ENST00000538546	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
3UTR-3UTR	ENST00000535623	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
3UTR-intron	ENST00000535623	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
intron-3UTR	ENST00000535011	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
intron-intron	ENST00000535011	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-3UTR	ENST00000542996	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-intron	ENST00000542996	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-3UTR	ENST00000249364	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-intron	ENST00000249364	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-3UTR	ENST00000449187	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-intron	ENST00000449187	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-3UTR	ENST00000479257	ENST00000546954		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
5CDS-intron	ENST00000479257	ENST00000302432		ChiTaRS3.1			CF135162	CALU	chr7	128407569	-	TRIAP1	chr12	120881856	-
intron-intron	ENST00000262812	ENST00000468410		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000262812	ENST00000222574		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000262812	ENST00000485846		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000262812	ENST00000461963		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000349893	ENST00000468410		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000349893	ENST00000222574		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000349893	ENST00000485846		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000349893	ENST00000461963		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000600932	ENST00000468410		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000600932	ENST00000222574		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000600932	ENST00000485846		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000600932	ENST00000461963		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000598969	ENST00000468410		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000598969	ENST00000222574		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000598969	ENST00000485846		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-intron	ENST00000598969	ENST00000461963		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
5CDS-intron	ENST00000351079	ENST00000468410		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
5CDS-intron	ENST00000351079	ENST00000222574		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
5CDS-intron	ENST00000351079	ENST00000485846		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
5CDS-intron	ENST00000351079	ENST00000461963		ChiTaRS3.1			AA709142	COPE	chr19	19010383	+	HBP1	chr7	106841170	+
intron-3CDS	ENST00000229854	ENST00000380525		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000229854	ENST00000397111		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000229854	ENST00000278224		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000229854	ENST00000470221		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000229854	ENST00000401769		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000229854	ENST00000397114		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000596288	ENST00000380525		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000596288	ENST00000397111		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000596288	ENST00000278224		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000596288	ENST00000470221		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000596288	ENST00000401769		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000596288	ENST00000397114		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000419835	ENST00000380525		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000419835	ENST00000397111		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000419835	ENST00000278224		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000419835	ENST00000470221		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000419835	ENST00000401769		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000419835	ENST00000397114		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000476448	ENST00000380525		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000476448	ENST00000397111		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3CDS	ENST00000476448	ENST00000278224		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000476448	ENST00000470221		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000476448	ENST00000401769		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-intron	ENST00000476448	ENST00000397114		ChiTaRS3.1			BI117082	MCM3	chr6	52146874	+	CARS	chr11	3047971	-
intron-3UTR	ENST00000252071	ENST00000519937		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000252071	ENST00000342375		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000252071	ENST00000393822		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000252071	ENST00000409383		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000539352	ENST00000519937		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000539352	ENST00000342375		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000539352	ENST00000393822		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-3UTR	ENST00000539352	ENST00000409383		ChiTaRS3.1			AY102072	ACTR3C	chr7	149958956	-	SFTPB	chr2	85885658	-
intron-intron	ENST00000438796	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000438796	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000414675	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000441090	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000334859	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000425562	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000493726	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000438796		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000414675		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000441090		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000334859		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000425562		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000493726		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-intron	ENST00000536618	ENST00000536618		ChiTaRS3.1			BM272432	LRCH3	chr3	197526464	+	LRCH3	chr3	197519936	+
intron-5UTR	ENST00000390237	ENST00000485803		ChiTaRS3.1			BE825162	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-5UTR	ENST00000390237	ENST00000373016		ChiTaRS3.1			BE825162	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-intron	ENST00000489520	ENST00000347053		ChiTaRS3.1			GQ272323	RPSAP52	chr12	66345196	+	COG5	chr7	106901419	+
intron-intron	ENST00000489520	ENST00000297135		ChiTaRS3.1			GQ272323	RPSAP52	chr12	66345196	+	COG5	chr7	106901419	+
intron-intron	ENST00000489520	ENST00000393603		ChiTaRS3.1			GQ272323	RPSAP52	chr12	66345196	+	COG5	chr7	106901419	+
intron-intron	ENST00000489520	ENST00000475638		ChiTaRS3.1			GQ272323	RPSAP52	chr12	66345196	+	COG5	chr7	106901419	+
intron-intron	ENST00000361339	ENST00000361339		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000361339	ENST00000426508		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000361339	ENST00000439987		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000426508	ENST00000361339		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000426508	ENST00000426508		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000426508	ENST00000439987		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000439987	ENST00000361339		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000439987	ENST00000426508		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
intron-intron	ENST00000439987	ENST00000439987		ChiTaRS3.1			AK023912	IFT140	chr16	1598161	-	IFT140	chr16	1602113	-
3UTR-3UTR	ENST00000380527	ENST00000380527		ChiTaRS3.1			AA737252	RRAGA	chr9	19050807	+	RRAGA	chr9	19050959	-
3UTR-5UTR	ENST00000232905	ENST00000232905		ChiTaRS3.1			AW205722	EIF1B	chr3	40353584	-	EIF1B	chr3	40351390	+
intron-intron	ENST00000295666	ENST00000295666		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000295666	ENST00000537922		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000295666	ENST00000512512		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000537922	ENST00000295666		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000537922	ENST00000537922		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000537922	ENST00000512512		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000512512	ENST00000295666		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000512512	ENST00000537922		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
intron-intron	ENST00000512512	ENST00000512512		ChiTaRS3.1			BM969902	IGFBP7	chr4	57897504	+	IGFBP7	chr4	57898734	-
5CDS-intron	ENST00000000233	ENST00000000233		ChiTaRS3.1			AA077782	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
5CDS-intron	ENST00000000233	ENST00000467281		ChiTaRS3.1			AA077782	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
3UTR-intron	ENST00000467281	ENST00000000233		ChiTaRS3.1			AA077782	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
3UTR-intron	ENST00000467281	ENST00000467281		ChiTaRS3.1			AA077782	ARF5	chr7	127229181	+	ARF5	chr7	127229648	-
intron-3CDS	ENST00000374566	ENST00000255194		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
intron-3CDS	ENST00000374566	ENST00000519295		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
intron-intron	ENST00000374566	ENST00000523204		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
intron-3CDS	ENST00000374557	ENST00000255194		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
intron-3CDS	ENST00000374557	ENST00000519295		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
intron-intron	ENST00000374557	ENST00000523204		ChiTaRS3.1			DA978262	EPB41L4B	chr9	112058193	+	AP3B1	chr5	77396851	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BF577322	MALAT1	chr11	65271159	+	MALAT1	chr11	65266535	+
intron-5UTR	ENST00000334746	ENST00000316292		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000334746	ENST00000491404		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000334746	ENST00000309268		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000334746	ENST00000331523		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000316292		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000554565	ENST00000491404		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000309268		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000331523		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000316292		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000393170	ENST00000491404		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000309268		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000331523		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000316292		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000298896	ENST00000491404		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000309268		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000331523		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000316292		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000555525	ENST00000491404		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000309268		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000331523		ChiTaRS3.1			BC006102	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-3UTR	ENST00000353258	ENST00000353258		ChiTaRS3.1			BE007392	GDE1	chr16	19516363	+	GDE1	chr16	19514280	+
intron-3CDS	ENST00000520539	ENST00000262189		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000520539	ENST00000355193		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000520539	ENST00000485655		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000520539	ENST00000485241		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000220959	ENST00000262189		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000220959	ENST00000355193		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000220959	ENST00000485655		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000220959	ENST00000485241		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000518205	ENST00000262189		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000518205	ENST00000355193		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000518205	ENST00000485655		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000518205	ENST00000485241		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000521922	ENST00000262189		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000521922	ENST00000355193		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000521922	ENST00000485655		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000521922	ENST00000485241		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000519528	ENST00000262189		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000519528	ENST00000355193		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000519528	ENST00000485655		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000519528	ENST00000485241		ChiTaRS3.1			BF088402	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000251808	ENST00000313899		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000251808	ENST00000353341		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000251808	ENST00000543098		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000251808	ENST00000352301		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000251808	ENST00000508119		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000251808	ENST00000541060		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000313899		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000353341		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000543098		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000352301		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000508119		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000395927	ENST00000541060		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000313899		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000353341		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000543098		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000352301		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000508119		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000517674	ENST00000541060		ChiTaRS3.1			BE935692	GRHL2	chr8	102629189	+	HNRNPD	chr4	83284211	-
intron-intron	ENST00000469379	ENST00000226730		ChiTaRS3.1			Z14319	DEXI	chr16	11032360	+	IL2	chr4	123373359	-
intron-intron	ENST00000331808	ENST00000226730		ChiTaRS3.1			Z14319	DEXI	chr16	11032360	+	IL2	chr4	123373359	-
3UTR-intron	ENST00000407597	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000407597	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-3UTR	ENST00000407597	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000407597	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000407597	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000424279	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000424279	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-3UTR	ENST00000424279	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000424279	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000424279	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000536365	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000536365	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-3UTR	ENST00000536365	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000536365	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000536365	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000380961	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000380961	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-3UTR	ENST00000380961	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000380961	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000380961	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000217964	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000217964	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-3UTR	ENST00000217964	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000217964	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
3UTR-intron	ENST00000217964	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000497555	ENST00000419197		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000497555	ENST00000526888		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-3UTR	ENST00000497555	ENST00000527958		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000497555	ENST00000529887		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000497555	ENST00000530272		ChiTaRS3.1			AW629132	TBL1X	chrX	9687633	-	PAFAH1B2	chr11	117039159	-
intron-intron	ENST00000346798	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000346798	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000354192	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000348990	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000357903	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000358918	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000359726	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000448388	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000440126	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000439274	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000376389		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000456573		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000470643		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000420604		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000436822		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000492441		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000383382		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000460694		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000553223		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000470163		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000383562		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000496175		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000490802		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000430843		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000444632		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000474136	ENST00000466680		ChiTaRS3.1			AW366722	APP	chr21	27369710	-	FLOT1	chr6	2030214	+
intron-intron	ENST00000419748	ENST00000419748		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000419748	ENST00000303236		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000419748	ENST00000470706		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000303236	ENST00000419748		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000303236	ENST00000303236		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000303236	ENST00000470706		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000470706	ENST00000419748		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000470706	ENST00000303236		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000470706	ENST00000470706		ChiTaRS3.1			BF738032	EIF2AK3	chr2	88890520	-	EIF2AK3	chr2	88887503	+
intron-intron	ENST00000286548	ENST00000286548		ChiTaRS3.1			AA729462	GNAQ	chr9	80490274	-	GNAQ	chr9	80490470	+
intron-intron	ENST00000286548	ENST00000397476		ChiTaRS3.1			AA729462	GNAQ	chr9	80490274	-	GNAQ	chr9	80490470	+
intron-intron	ENST00000397476	ENST00000286548		ChiTaRS3.1			AA729462	GNAQ	chr9	80490274	-	GNAQ	chr9	80490470	+
intron-intron	ENST00000397476	ENST00000397476		ChiTaRS3.1			AA729462	GNAQ	chr9	80490274	-	GNAQ	chr9	80490470	+
3UTR-3UTR	ENST00000260356	ENST00000260356		ChiTaRS3.1			AA947542	THBS1	chr15	39889183	+	THBS1	chr15	39889123	-
intron-intron	ENST00000540628	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000540628		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000360429		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000568954		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000393524		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000356272		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000567016		ChiTaRS3.1			AW885592	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-3CDS	ENST00000562982	ENST00000562982		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000562982	ENST00000305904		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000562982	ENST00000568035		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-intron	ENST00000562982	ENST00000570222		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000305904	ENST00000562982		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000305904	ENST00000305904		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000305904	ENST00000568035		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-intron	ENST00000305904	ENST00000570222		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000568035	ENST00000562982		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000568035	ENST00000305904		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000568035	ENST00000568035		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-intron	ENST00000568035	ENST00000570222		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000570222	ENST00000562982		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000570222	ENST00000305904		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-3CDS	ENST00000570222	ENST00000568035		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
intron-intron	ENST00000570222	ENST00000570222		ChiTaRS3.1			BU675852	DYNLRB2	chr16	80584406	-	DYNLRB2	chr16	80577219	+
5CDS-intron	ENST00000361204	ENST00000310298		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
5CDS-intron	ENST00000361204	ENST00000557957		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
5CDS-intron	ENST00000361204	ENST00000394553		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
5CDS-intron	ENST00000361204	ENST00000339708		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
5CDS-intron	ENST00000361204	ENST00000557819		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000491541	ENST00000310298		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000491541	ENST00000557957		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000491541	ENST00000394553		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000491541	ENST00000339708		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000491541	ENST00000557819		ChiTaRS3.1			BG014072	SREBF2	chr22	42262926	+	PDE8A	chr15	85551237	+
intron-intron	ENST00000299492	ENST00000299492		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000299492	ENST00000533792		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000299492	ENST00000528883		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000299492	ENST00000530181		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000299492	ENST00000530582		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000533792	ENST00000299492		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000533792	ENST00000533792		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000533792	ENST00000528883		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000533792	ENST00000530181		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000533792	ENST00000530582		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000528883	ENST00000299492		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000528883	ENST00000533792		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000528883	ENST00000528883		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000528883	ENST00000530181		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000528883	ENST00000530582		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530181	ENST00000299492		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530181	ENST00000533792		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530181	ENST00000528883		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530181	ENST00000530181		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530181	ENST00000530582		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530582	ENST00000299492		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530582	ENST00000533792		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530582	ENST00000528883		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530582	ENST00000530181		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
intron-intron	ENST00000530582	ENST00000530582		ChiTaRS3.1			CV368822	PPFIBP2	chr11	7626560	+	PPFIBP2	chr11	7625975	+
3UTR-intron	ENST00000334982	ENST00000540235		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000334982	ENST00000393930		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000334982	ENST00000393931		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000334982	ENST00000310706		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000484480	ENST00000540235		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000484480	ENST00000393930		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000484480	ENST00000393931		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000484480	ENST00000310706		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000310450	ENST00000540235		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000310450	ENST00000393930		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000310450	ENST00000393931		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000310450	ENST00000310706		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000398602	ENST00000540235		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000398602	ENST00000393930		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000398602	ENST00000393931		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
3UTR-intron	ENST00000398602	ENST00000310706		ChiTaRS3.1			AA115432	NAA20	chr20	20014109	-	JUP	chr17	39847167	+
intron-intron	ENST00000262764	ENST00000262764		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000262764	ENST00000329897		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000262764	ENST00000588281		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000329897	ENST00000262764		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000329897	ENST00000329897		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000329897	ENST00000588281		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000588281	ENST00000262764		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000588281	ENST00000329897		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000588281	ENST00000588281		ChiTaRS3.1			BF898112	PGS1	chr17	76403318	-	PGS1	chr17	76403401	+
intron-intron	ENST00000381166	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000381166	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000381166	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000381166	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000381166	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000381166	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000427855	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000340738	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554301	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000555445	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000381166		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000427855		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000340738		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000554301		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000555445		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-intron	ENST00000554314	ENST00000554314		ChiTaRS3.1			BI000622	PAPLN	chr14	73734269	-	PAPLN	chr14	73735106	+
intron-5UTR	ENST00000393143	ENST00000366628		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-5UTR	ENST00000393143	ENST00000366627		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-intron	ENST00000393143	ENST00000490098		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-5UTR	ENST00000393140	ENST00000366628		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-5UTR	ENST00000393140	ENST00000366627		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-intron	ENST00000393140	ENST00000490098		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-5UTR	ENST00000316227	ENST00000366628		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-5UTR	ENST00000316227	ENST00000366627		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
intron-intron	ENST00000316227	ENST00000490098		ChiTaRS3.1			BC080642	PRIMA1	chr14	94254809	+	NTPCR	chr1	233086414	+
5CDS-intron	ENST00000393600	ENST00000368606		ChiTaRS3.1			BF882572	FAM50A	chrX	153674791	+	FAM26F	chr6	116783536	+
5CDS-intron	ENST00000393600	ENST00000368605		ChiTaRS3.1			BF882572	FAM50A	chrX	153674791	+	FAM26F	chr6	116783536	+
5CDS-intron	ENST00000560079	ENST00000560079		ChiTaRS3.1			BF951592	ZNF592	chr15	85328018	+	ZNF592	chr15	85328127	-
5CDS-intron	ENST00000560079	ENST00000299927		ChiTaRS3.1			BF951592	ZNF592	chr15	85328018	+	ZNF592	chr15	85328127	-
5CDS-intron	ENST00000299927	ENST00000560079		ChiTaRS3.1			BF951592	ZNF592	chr15	85328018	+	ZNF592	chr15	85328127	-
5CDS-intron	ENST00000299927	ENST00000299927		ChiTaRS3.1			BF951592	ZNF592	chr15	85328018	+	ZNF592	chr15	85328127	-
intron-intron	ENST00000396153	ENST00000396153		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000371778		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000545823		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000396153	ENST00000472808		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000396153		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000371778		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000545823		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000371778	ENST00000472808		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000396153		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000371778		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000545823		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000545823	ENST00000472808		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000396153		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000371778		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000545823		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-intron	ENST00000472808	ENST00000472808		ChiTaRS3.1			CA842852	FAF1	chr1	51105332	+	FAF1	chr1	51104449	+
intron-3CDS	ENST00000225964	ENST00000225964		ChiTaRS3.1			BQ776272	COL1A1	chr17	48263336	+	COL1A1	chr17	48264163	-
intron-3CDS	ENST00000369393	ENST00000369393		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000369393	ENST00000428876		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-intron	ENST00000369393	ENST00000468568		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000428876	ENST00000369393		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000428876	ENST00000428876		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-intron	ENST00000428876	ENST00000468568		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000468568	ENST00000369393		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3CDS	ENST00000468568	ENST00000428876		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-intron	ENST00000468568	ENST00000468568		ChiTaRS3.1			BC014882	MDN1	chr6	90383108	+	MDN1	chr6	90383071	-
intron-3UTR	ENST00000466398	ENST00000331825		ChiTaRS3.1			AK131432	ZNF385B	chr2	180309638	-	FTL	chr19	49470024	+
intron-3UTR	ENST00000410066	ENST00000331825		ChiTaRS3.1			AK131432	ZNF385B	chr2	180309638	-	FTL	chr19	49470024	+
intron-3UTR	ENST00000336917	ENST00000331825		ChiTaRS3.1			AK131432	ZNF385B	chr2	180309638	-	FTL	chr19	49470024	+
intron-3UTR	ENST00000409343	ENST00000331825		ChiTaRS3.1			AK131432	ZNF385B	chr2	180309638	-	FTL	chr19	49470024	+
intron-3UTR	ENST00000409692	ENST00000331825		ChiTaRS3.1			AK131432	ZNF385B	chr2	180309638	-	FTL	chr19	49470024	+
intron-intron	ENST00000222219	ENST00000222219		ChiTaRS3.1			AW610362	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000222219	ENST00000538460		ChiTaRS3.1			AW610362	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000538460	ENST00000222219		ChiTaRS3.1			AW610362	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000538460	ENST00000538460		ChiTaRS3.1			AW610362	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
3UTR-3UTR	ENST00000354532	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000354532	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-intron	ENST00000354532	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000599846	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000599846	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-intron	ENST00000599846	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
intron-3UTR	ENST00000596957	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
intron-3UTR	ENST00000596957	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
intron-intron	ENST00000596957	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000347545	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000347545	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-intron	ENST00000347545	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
5CDS-3UTR	ENST00000378152	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
5CDS-3UTR	ENST00000378152	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
5CDS-intron	ENST00000378152	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000337665	ENST00000318430		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-3UTR	ENST00000337665	ENST00000589691		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
3UTR-intron	ENST00000337665	ENST00000591144		ChiTaRS3.1			AW028312	ARHGEF1	chr19	42411523	-	TMC8	chr17	76138969	-
intron-3CDS	ENST00000393562	ENST00000393562		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000393562	ENST00000369620		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000393562	ENST00000393564		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-intron	ENST00000393562	ENST00000497281		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000369620	ENST00000393562		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000369620	ENST00000369620		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000369620	ENST00000393564		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-intron	ENST00000369620	ENST00000497281		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000393564	ENST00000393562		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000393564	ENST00000369620		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000393564	ENST00000393564		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-intron	ENST00000393564	ENST00000497281		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000497281	ENST00000393562		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000497281	ENST00000369620		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000497281	ENST00000393564		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-intron	ENST00000497281	ENST00000497281		ChiTaRS3.1			BE816962	G6PD	chrX	153761181	-	G6PD	chrX	153761805	+
intron-3CDS	ENST00000526148	ENST00000361441		ChiTaRS3.1			BF914332	EIF4G2	chr11	10820973	+	APOBEC3C	chr22	39414011	+
intron-3CDS	ENST00000525681	ENST00000361441		ChiTaRS3.1			BF914332	EIF4G2	chr11	10820973	+	APOBEC3C	chr22	39414011	+
intron-3CDS	ENST00000339995	ENST00000361441		ChiTaRS3.1			BF914332	EIF4G2	chr11	10820973	+	APOBEC3C	chr22	39414011	+
intron-3CDS	ENST00000396525	ENST00000361441		ChiTaRS3.1			BF914332	EIF4G2	chr11	10820973	+	APOBEC3C	chr22	39414011	+
intron-3CDS	ENST00000525995	ENST00000361441		ChiTaRS3.1			BF914332	EIF4G2	chr11	10820973	+	APOBEC3C	chr22	39414011	+
intron-3UTR	ENST00000434178	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000434178	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000434178	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000434178	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000434178	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000434178	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000265052	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000265052	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000265052	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000265052	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000265052	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000265052	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398104	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398104	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398104	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398104	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398104	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398104	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000453507	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000453507	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000453507	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000453507	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000453507	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000453507	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000476682	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000476682	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000476682	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000476682	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000476682	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000476682	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398101	ENST00000434178		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398101	ENST00000265052		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000398101	ENST00000398104		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398101	ENST00000453507		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398101	ENST00000476682		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-intron	ENST00000398101	ENST00000398101		ChiTaRS3.1			AI817662	MGLL	chr3	127411083	+	MGLL	chr3	127408820	+
intron-3UTR	ENST00000441493	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000441493	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000441493	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000441493	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000400561	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000400561	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000400561	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000400561	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000444520	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000444520	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000444520	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000444520	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000414725	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000414725	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000414725	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000414725	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000383094	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000383094	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000383094	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000383094	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000207726	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000207726	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000207726	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000207726	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000429452	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000429452	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000429452	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000429452	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000585038	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000585038	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000585038	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000585038	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000580469	ENST00000433473		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-5UTR	ENST00000580469	ENST00000372775		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-3UTR	ENST00000580469	ENST00000449045		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
intron-intron	ENST00000580469	ENST00000530076		ChiTaRS3.1			BE837732	MICAL3	chr22	18410434	-	PPT1	chr1	40539664	+
3UTR-3UTR	ENST00000379261	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000379261	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000379261	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000379261	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000379261	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000379261	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000416382	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000416382	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000416382	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000416382	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000416382	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000416382	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000450189	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000450189	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000450189	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000450189	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000450189	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000450189	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000542579	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000542579	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000542579	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000542579	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000542579	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000542579	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000399850	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000399850	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000399850	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000399850	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000399850	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000399850	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000417956	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000417956	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000417956	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000417956	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000417956	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000417956	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000354440	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000354440	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000354440	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000354440	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000354440	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000354440	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000427450	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000427450	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000427450	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000427450	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000427450	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000427450	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000315874	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000315874	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000315874	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000315874	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-3UTR	ENST00000315874	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
3UTR-intron	ENST00000315874	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000608830	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000608830	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000608830	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000608830	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000608830	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000608830	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000609692	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000609692	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000609692	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000609692	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000609692	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000609692	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000354897	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000354897	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000354897	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000354897	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000354897	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000354897	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000537122	ENST00000379261		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000416382		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000537122	ENST00000450189		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000542579		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000399850		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000417956		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000537122	ENST00000354440		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000537122	ENST00000427450		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-3UTR	ENST00000537122	ENST00000315874		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000608830		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000609692		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000354897		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000537122	ENST00000537122		ChiTaRS3.1			CB218432	CELF2	chr10	11374354	-	CELF2	chr10	11375699	-
intron-intron	ENST00000582605	ENST00000582605		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000579964		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000578701		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000582605	ENST00000568797		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000582605		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000579964		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000578701		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000579964	ENST00000568797		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000582605		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000579964		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000578701		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000578701	ENST00000568797		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000582605		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000579964		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000578701		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000568797	ENST00000568797		ChiTaRS3.1			CA503352	AQP4-AS1	chr18	24495979	+	AQP4-AS1	chr18	24496248	-
intron-intron	ENST00000409869	ENST00000538935		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000409869	ENST00000359570		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000409869	ENST00000450745		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000409869	ENST00000455936		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000409869	ENST00000474278		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000295095	ENST00000538935		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000295095	ENST00000359570		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000295095	ENST00000450745		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000295095	ENST00000455936		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000295095	ENST00000474278		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000473426	ENST00000538935		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000473426	ENST00000359570		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000473426	ENST00000450745		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000473426	ENST00000455936		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
intron-intron	ENST00000473426	ENST00000474278		ChiTaRS3.1			BF903182	ARHGAP15	chr2	144121900	-	INPP5D	chr2	233969068	-
3UTR-5UTR	ENST00000274276	ENST00000404648		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
3UTR-intron	ENST00000274276	ENST00000405164		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
3UTR-intron	ENST00000274276	ENST00000336098		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
3UTR-intron	ENST00000274276	ENST00000407946		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
intron-5UTR	ENST00000502536	ENST00000404648		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
intron-intron	ENST00000502536	ENST00000405164		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
intron-intron	ENST00000502536	ENST00000336098		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
intron-intron	ENST00000502536	ENST00000407946		ChiTaRS3.1			AI133452	OSMR	chr5	38935546	-	FGG	chr4	155533803	-
intron-3CDS	ENST00000571133	ENST00000571133		ChiTaRS3.1			AI978722	RSL1D1	chr16	11935671	+	RSL1D1	chr16	11944259	-
intron-intron	ENST00000571133	ENST00000542106		ChiTaRS3.1			AI978722	RSL1D1	chr16	11935671	+	RSL1D1	chr16	11944259	-
intron-3CDS	ENST00000542106	ENST00000571133		ChiTaRS3.1			AI978722	RSL1D1	chr16	11935671	+	RSL1D1	chr16	11944259	-
intron-intron	ENST00000542106	ENST00000542106		ChiTaRS3.1			AI978722	RSL1D1	chr16	11935671	+	RSL1D1	chr16	11944259	-
intron-intron	ENST00000307845	ENST00000331493		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000307845	ENST00000517484		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000307845	ENST00000520802		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000381765	ENST00000331493		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000381765	ENST00000517484		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000381765	ENST00000520802		ChiTaRS3.1			BU149152	HPCAL1	chr2	10563912	+	EFCAB13	chr17	45502497	+
intron-intron	ENST00000338316	ENST00000579226		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000338316	ENST00000217652		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000338316	ENST00000578611		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000338316	ENST00000585090		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000338316	ENST00000580887		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000338316	ENST00000536605		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000537121	ENST00000579226		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000537121	ENST00000217652		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000537121	ENST00000578611		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000537121	ENST00000585090		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000537121	ENST00000580887		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000537121	ENST00000536605		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513693	ENST00000579226		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000513693	ENST00000217652		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000513693	ENST00000578611		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513693	ENST00000585090		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513693	ENST00000580887		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513693	ENST00000536605		ChiTaRS3.1			BF825732	ADCY2	chr1	152009434	+	MYL12A	chr18	3247826	+
3UTR-intron	ENST00000566699	ENST00000257100		ChiTaRS3.1			BI963092	JHDM1D-AS1	chr7	139877292	+	SPOCD1	chr1	32260237	-
3UTR-intron	ENST00000566699	ENST00000373648		ChiTaRS3.1			BI963092	JHDM1D-AS1	chr7	139877292	+	SPOCD1	chr1	32260237	-
3UTR-intron	ENST00000566699	ENST00000360482		ChiTaRS3.1			BI963092	JHDM1D-AS1	chr7	139877292	+	SPOCD1	chr1	32260237	-
3UTR-intron	ENST00000566699	ENST00000533231		ChiTaRS3.1			BI963092	JHDM1D-AS1	chr7	139877292	+	SPOCD1	chr1	32260237	-
3UTR-3UTR	ENST00000331320	ENST00000352732		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000331320	ENST00000565973		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000331320	ENST00000355100		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000331320	ENST00000562254		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000406191	ENST00000352732		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000406191	ENST00000565973		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000406191	ENST00000355100		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000406191	ENST00000562254		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000405646	ENST00000352732		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000405646	ENST00000565973		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000405646	ENST00000355100		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000405646	ENST00000562254		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000435036	ENST00000352732		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000435036	ENST00000565973		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-3UTR	ENST00000435036	ENST00000355100		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
3UTR-intron	ENST00000435036	ENST00000562254		ChiTaRS3.1			AI380042	MTA1	chr14	105936653	-	ABHD2	chr15	89740543	-
intron-intron	ENST00000222219	ENST00000222219		ChiTaRS3.1			AW610372	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000222219	ENST00000538460		ChiTaRS3.1			AW610372	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000538460	ENST00000222219		ChiTaRS3.1			AW610372	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
intron-intron	ENST00000538460	ENST00000538460		ChiTaRS3.1			AW610372	DNASE2	chr19	12986794	-	DNASE2	chr19	12989715	-
3UTR-intron	ENST00000228027	ENST00000428084		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000228027	ENST00000494651		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000228027	ENST00000437633		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000228027	ENST00000476846		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000376262	ENST00000428084		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000376262	ENST00000494651		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000376262	ENST00000437633		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
3UTR-intron	ENST00000376262	ENST00000476846		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
intron-intron	ENST00000605608	ENST00000428084		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
intron-intron	ENST00000605608	ENST00000494651		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
intron-intron	ENST00000605608	ENST00000437633		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
intron-intron	ENST00000605608	ENST00000476846		ChiTaRS3.1			CB153782	DGAT2	chr11	75512301	-	DOCK4	chr7	111517029	-
intron-3UTR	ENST00000394332	ENST00000377038		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394332	ENST00000377036		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000394333	ENST00000377038		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000394333	ENST00000377036		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000479035	ENST00000377038		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000479035	ENST00000377036		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000245857	ENST00000377038		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000245857	ENST00000377036		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-3UTR	ENST00000577407	ENST00000377038		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
intron-intron	ENST00000577407	ENST00000377036		ChiTaRS3.1			AI962592	RPL23	chr17	37008942	-	DFFA	chr1	10521539	-
3UTR-3UTR	ENST00000290551	ENST00000290551		ChiTaRS3.1			CD240342	BTG2	chr1	203278712	+	BTG2	chr1	203278580	-
intron-intron	ENST00000309446	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000309446	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000309446	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000309446	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000309446	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000421199	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000421199	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000421199	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000421199	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000421199	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000423015	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000423015	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000423015	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000423015	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000423015	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000458272	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000458272	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000458272	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000458272	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000458272	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000412414	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000412414	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000412414	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000412414	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000412414	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000467833	ENST00000302313		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000467833	ENST00000418020		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000467833	ENST00000544962		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000467833	ENST00000396258		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000467833	ENST00000466405		ChiTaRS3.1			AW898252	KLF7	chr2	207998361	-	WDR48	chr3	39134097	-
intron-intron	ENST00000379350	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379350	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379348	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000332995	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000482982	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379345	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000457702	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379335	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000379350		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000379348		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000332995		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000482982		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000379345		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000457702		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000379335		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-intron	ENST00000379329	ENST00000379329		ChiTaRS3.1			BE091632	PHACTR1	chr6	12976609	+	PHACTR1	chr6	12866280	+
intron-3CDS	ENST00000587885	ENST00000355117		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000540841		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000540178		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000360409		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000417189		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000357118		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000357785		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000272849		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000587885	ENST00000412873		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-intron	ENST00000587885	ENST00000485684		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000355117		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000540841		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000540178		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000360409		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000417189		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000357118		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000357785		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000272849		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-3CDS	ENST00000292433	ENST00000412873		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-intron	ENST00000292433	ENST00000485684		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000355117		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000540841		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000540178		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000360409		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000417189		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000357118		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000357785		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000272849		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-3CDS	ENST00000588173	ENST00000412873		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
5UTR-intron	ENST00000588173	ENST00000485684		ChiTaRS3.1			BF985272	IER2	chr19	13263245	-	NRP2	chr2	206608172	+
intron-intron	ENST00000327087	ENST00000327087		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000327087	ENST00000546188		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000327087	ENST00000356134		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000327087	ENST00000538154		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000546188	ENST00000327087		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000546188	ENST00000546188		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000546188	ENST00000356134		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000546188	ENST00000538154		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000356134	ENST00000327087		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000356134	ENST00000546188		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000356134	ENST00000356134		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000356134	ENST00000538154		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000538154	ENST00000327087		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000538154	ENST00000546188		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000538154	ENST00000356134		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-intron	ENST00000538154	ENST00000538154		ChiTaRS3.1			BM718262	ANO2	chr12	5714239	+	ANO2	chr12	5713565	+
intron-3CDS	ENST00000257915	ENST00000257915		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000257915	ENST00000307660		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000257915	ENST00000549867		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000257915	ENST00000548115		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-3CDS	ENST00000307660	ENST00000257915		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000307660	ENST00000307660		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000307660	ENST00000549867		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000307660	ENST00000548115		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-3CDS	ENST00000549867	ENST00000257915		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000549867	ENST00000307660		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000549867	ENST00000549867		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000549867	ENST00000548115		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-3CDS	ENST00000548115	ENST00000257915		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000548115	ENST00000307660		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000548115	ENST00000549867		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
intron-intron	ENST00000548115	ENST00000548115		ChiTaRS3.1			BF904982	TFCP2	chr12	51566593	+	TFCP2	chr12	51502936	-
3UTR-intron	ENST00000360289	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000360289	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000448642	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000404387	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000298649	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
3UTR-intron	ENST00000359426	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000441293		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000314728		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000347697		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000395618		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000575595		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000395620		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000395626		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-intron	ENST00000494253	ENST00000571254		ChiTaRS3.1			BI055002	HK1	chr10	71161395	-	EPN2	chr17	19225736	+
intron-3CDS	ENST00000380345	ENST00000396024		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000380345	ENST00000451270		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000380345	ENST00000332680		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000380345	ENST00000421017		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000380345	ENST00000557937		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-3CDS	ENST00000515007	ENST00000396024		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515007	ENST00000451270		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515007	ENST00000332680		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515007	ENST00000421017		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515007	ENST00000557937		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-3CDS	ENST00000515349	ENST00000396024		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515349	ENST00000451270		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515349	ENST00000332680		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515349	ENST00000421017		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-5UTR	ENST00000515349	ENST00000557937		ChiTaRS3.1			DA591552	LHFPL2	chr5	77923199	-	ANXA2	chr15	60690185	-
intron-intron	ENST00000348943	ENST00000348943		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000348943	ENST00000325495		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000348943	ENST00000602219		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000325495	ENST00000348943		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000325495	ENST00000325495		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000325495	ENST00000602219		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000602219	ENST00000348943		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000602219	ENST00000325495		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000602219	ENST00000602219		ChiTaRS3.1			AI220112	HNRNPM	chr19	8545310	+	HNRNPM	chr19	8544205	+
intron-intron	ENST00000367033	ENST00000553116		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000367033	ENST00000360299		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000367033	ENST00000448789		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000483048	ENST00000553116		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000483048	ENST00000360299		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000483048	ENST00000448789		ChiTaRS3.1			BG002792	PLXNA2	chr1	208328977	-	RAB5B	chr12	56373182	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			U19400	BCR	chr22	23633595	+	ABL1	chr9	133705632	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			U19400	BCR	chr22	23633595	+	ABL1	chr9	133705632	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			U19400	BCR	chr22	23633595	+	ABL1	chr9	133705632	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			U19400	BCR	chr22	23633595	+	ABL1	chr9	133705632	+
intron-3CDS	ENST00000361757	ENST00000368765		ChiTaRS3.1			AK058132	SBNO2	chr19	1108792	-	SMCP	chr1	152850797	+
intron-3CDS	ENST00000587024	ENST00000368765		ChiTaRS3.1			AK058132	SBNO2	chr19	1108792	-	SMCP	chr1	152850797	+
intron-3CDS	ENST00000438103	ENST00000368765		ChiTaRS3.1			AK058132	SBNO2	chr19	1108792	-	SMCP	chr1	152850797	+
3UTR-3UTR	ENST00000275820	ENST00000275820		ChiTaRS3.1			BF891072	NOM1	chr7	156763367	-	NOM1	chr7	156765193	-
3UTR-intron	ENST00000275820	ENST00000460332		ChiTaRS3.1			BF891072	NOM1	chr7	156763367	-	NOM1	chr7	156765193	-
intron-3UTR	ENST00000460332	ENST00000275820		ChiTaRS3.1			BF891072	NOM1	chr7	156763367	-	NOM1	chr7	156765193	-
intron-intron	ENST00000460332	ENST00000460332		ChiTaRS3.1			BF891072	NOM1	chr7	156763367	-	NOM1	chr7	156765193	-
intron-intron	ENST00000377707	ENST00000398842		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000398809		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000461841		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000299366		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000224721		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000398788		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377707	ENST00000475158		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000398842		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000398809		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000461841		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000299366		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000224721		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000398788		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-intron	ENST00000377700	ENST00000475158		ChiTaRS3.1			AA985372	SHB	chr9	37919147	-	CDH23	chr10	73520542	+
intron-3UTR	ENST00000377799	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377799	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377799	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000377766	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000377766	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000412821	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000412821	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000358282	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000358282	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000351358	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000351358	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000457442	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000457442	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000452380	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000452380	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000322191		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000342512		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000371774		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-3UTR	ENST00000488990	ENST00000307534		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
intron-intron	ENST00000488990	ENST00000488482		ChiTaRS3.1			BF827382	TRDMT1	chr10	17185783	-	PANK1	chr10	91344093	+
3UTR-3CDS	ENST00000451320	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
intron-3CDS	ENST00000429148	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
3UTR-3CDS	ENST00000353617	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
intron-3CDS	ENST00000405727	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
intron-3CDS	ENST00000356064	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
intron-3CDS	ENST00000511289	ENST00000239223		ChiTaRS3.1			AV722782	ARFIP1	chr4	153832600	-	DUSP1	chr5	172197842	-
intron-intron	ENST00000579433	ENST00000328252		ChiTaRS3.1			BF997872	MIR3134	chr9	114825842	+	PAPPA	chr9	119131391	-
intron-intron	ENST00000579433	ENST00000534838		ChiTaRS3.1			BF997872	MIR3134	chr9	114825842	+	PAPPA	chr9	119131391	-
intron-intron	ENST00000579433	ENST00000483254		ChiTaRS3.1			BF997872	MIR3134	chr9	114825842	+	PAPPA	chr9	119131391	-
5CDS-3UTR	ENST00000256383	ENST00000373943		ChiTaRS3.1			AI114762	EIF2S1	chr14	67831509	+	STX12	chr1	28149343	+
5CDS-intron	ENST00000256383	ENST00000468761		ChiTaRS3.1			AI114762	EIF2S1	chr14	67831509	+	STX12	chr1	28149343	+
5CDS-3UTR	ENST00000466499	ENST00000373943		ChiTaRS3.1			AI114762	EIF2S1	chr14	67831509	+	STX12	chr1	28149343	+
5CDS-intron	ENST00000466499	ENST00000468761		ChiTaRS3.1			AI114762	EIF2S1	chr14	67831509	+	STX12	chr1	28149343	+
5CDS-3UTR	ENST00000295897	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
intron-3UTR	ENST00000415165	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
intron-3UTR	ENST00000503124	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
5CDS-3UTR	ENST00000509063	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
intron-3UTR	ENST00000401494	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
3UTR-3UTR	ENST00000505649	ENST00000534336		ChiTaRS3.1			BG545312	ALB	chr4	74274400	+	MALAT1	chr11	65267378	+
intron-3CDS	ENST00000394906	ENST00000268171		ChiTaRS3.1			BQ102242	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000394908	ENST00000268171		ChiTaRS3.1			BQ102242	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000585169	ENST00000268171		ChiTaRS3.1			BQ102242	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3CDS	ENST00000577789	ENST00000268171		ChiTaRS3.1			BQ102242	FLOT2	chr17	27207151	-	FURIN	chr15	91424801	+
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CO245632	IGFBP5	chr2	217537657	-	IGFBP5	chr2	217538424	-
intron-3UTR	ENST00000357389	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-3UTR	ENST00000327773	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-3UTR	ENST00000476291	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-3UTR	ENST00000418959	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-3UTR	ENST00000450766	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-3UTR	ENST00000355761	ENST00000390237		ChiTaRS3.1			CB986192	GAS6	chr13	114539826	-	IGKC	chr2	89156749	-
intron-intron	ENST00000389341	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000389341		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000342301		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000533720		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000526816		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000529067		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000560558		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000560398		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000529952		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000524801		ChiTaRS3.1			AI654702	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
Frame-shit	ENST00000440884	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000440884	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000440884	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000440884	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000440884	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000440884	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000440884	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000440884	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000416682	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000416682	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000416682	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000416682	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000416682	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000416682	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000416682	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000416682	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000429436	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000429436	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000429436	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000429436	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000429436	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000429436	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000429436	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000429436	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000303622	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000303622	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000303622	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000303622	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000303622	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000303622	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000303622	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000303622	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000216288	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000216288	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000216288	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000216288	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000216288	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000216288	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000216288	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000216288	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000553942	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000553942	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000553942	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000553942	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000553942	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000553942	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000553942	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000553942	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000335102	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000335102	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000335102	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000335102	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
Frame-shit	ENST00000335102	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000335102	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
In-frame	ENST00000335102	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
5CDS-3UTR	ENST00000335102	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000440884		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000416682		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000429436		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000303622		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000216288		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000553942		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3CDS	ENST00000561071	ENST00000335102		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
intron-3UTR	ENST00000561071	ENST00000561071		ChiTaRS3.1			BF356202	MARK3	chr14	103941522	-	MARK3	chr14	103969381	+
3UTR-intron	ENST00000280481	ENST00000275262		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-intron	ENST00000280481	ENST00000392127		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-intron	ENST00000280481	ENST00000453779		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-3UTR	ENST00000280481	ENST00000361752		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-intron	ENST00000280481	ENST00000361195		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-intron	ENST00000280481	ENST00000424802		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-intron	ENST00000482551	ENST00000275262		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-intron	ENST00000482551	ENST00000392127		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-intron	ENST00000482551	ENST00000453779		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-3UTR	ENST00000482551	ENST00000361752		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-intron	ENST00000482551	ENST00000361195		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
intron-intron	ENST00000482551	ENST00000424802		ChiTaRS3.1			AA255532	FREM2	chr13	39459954	-	QKI	chr6	163992454	-
3UTR-3CDS	ENST00000297579	ENST00000297579		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
3UTR-intron	ENST00000297579	ENST00000521716		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
3UTR-intron	ENST00000297579	ENST00000521971		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
3UTR-intron	ENST00000297579	ENST00000521999		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
3UTR-intron	ENST00000297579	ENST00000519682		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-3CDS	ENST00000521716	ENST00000297579		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521716	ENST00000521716		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521716	ENST00000521971		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521716	ENST00000521999		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521716	ENST00000519682		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-3CDS	ENST00000521971	ENST00000297579		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521971	ENST00000521716		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521971	ENST00000521971		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521971	ENST00000521999		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521971	ENST00000519682		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-3CDS	ENST00000521999	ENST00000297579		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521999	ENST00000521716		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521999	ENST00000521971		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521999	ENST00000521999		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000521999	ENST00000519682		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-3CDS	ENST00000519682	ENST00000297579		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000519682	ENST00000521716		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000519682	ENST00000521971		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000519682	ENST00000521999		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000519682	ENST00000519682		ChiTaRS3.1			BQ338782	DCAF13	chr8	104455117	+	DCAF13	chr8	104453788	-
intron-intron	ENST00000216181	ENST00000540235		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000216181	ENST00000393930		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000216181	ENST00000393931		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000216181	ENST00000310706		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000475726	ENST00000540235		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000475726	ENST00000393930		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000475726	ENST00000393931		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000475726	ENST00000310706		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000401701	ENST00000540235		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000401701	ENST00000393930		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000401701	ENST00000393931		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000401701	ENST00000310706		ChiTaRS3.1			BE185392	MYH9	chr22	36696928	-	JUP	chr17	39846352	-
intron-intron	ENST00000420415	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000420415	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000420415	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000420415	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000420415	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000420415	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000360110	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000540528	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000392396	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000535031	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000420415		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000360110		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000540528		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000392396		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000535031		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
intron-intron	ENST00000465288	ENST00000465288		ChiTaRS3.1			BU661402	TFRC	chr3	195783539	-	TFRC	chr3	195790555	-
5UTR-5UTR	ENST00000325083	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-5UTR	ENST00000519253	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-5UTR	ENST00000524226	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-5UTR	ENST00000518537	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-5UTR	ENST00000518936	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-5UTR	ENST00000327578	ENST00000398056		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000522444		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000398054		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000381840		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000381841		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000427924		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000518650		ChiTaRS3.1			BM910902	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000439374	ENST00000439374		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000439374	ENST00000540998		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000439374	ENST00000357235		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000439374	ENST00000492796		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000540998	ENST00000439374		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000540998	ENST00000540998		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000540998	ENST00000357235		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000540998	ENST00000492796		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000357235	ENST00000439374		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000357235	ENST00000540998		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000357235	ENST00000357235		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000357235	ENST00000492796		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000492796	ENST00000439374		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000492796	ENST00000540998		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000492796	ENST00000357235		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000492796	ENST00000492796		ChiTaRS3.1			BF934432	CDC42SE1	chr1	151025467	-	CDC42SE1	chr1	151029708	-
intron-intron	ENST00000296181	ENST00000393799		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000530427		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000393800		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000534534		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000524845		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000265637		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000524904		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000393801		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000265636		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000529710		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000296181	ENST00000527403		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000393799		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000530427		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000393800		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000534534		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000524845		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000265637		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000524904		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000393801		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000265636		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000529710		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-intron	ENST00000461306	ENST00000527403		ChiTaRS3.1			BQ331562	ITGB5	chr3	124567184	+	PPP6R3	chr11	68274778	+
intron-3CDS	ENST00000418109	ENST00000418109		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-3CDS	ENST00000418109	ENST00000305544		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-intron	ENST00000418109	ENST00000464891		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-3CDS	ENST00000305544	ENST00000418109		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-3CDS	ENST00000305544	ENST00000305544		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-intron	ENST00000305544	ENST00000464891		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-3CDS	ENST00000464891	ENST00000418109		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-3CDS	ENST00000464891	ENST00000305544		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-intron	ENST00000464891	ENST00000464891		ChiTaRS3.1			BF803132	LAMB2	chr3	49166576	+	LAMB2	chr3	49165945	-
intron-intron	ENST00000291270	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000291270	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000600757	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000343373	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000447742	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000458663	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000354227	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000300853		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000423698		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000588738		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000340192		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000591636		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000589165		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
intron-intron	ENST00000595361	ENST00000013807		ChiTaRS3.1			BF853752	DMPK	chr19	46282628	+	ERCC1	chr19	45971838	-
3UTR-intron	ENST00000252599	ENST00000545908		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
3UTR-intron	ENST00000252599	ENST00000216605		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
3UTR-intron	ENST00000252599	ENST00000556284		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
intron-intron	ENST00000601354	ENST00000545908		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
intron-intron	ENST00000601354	ENST00000216605		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
intron-intron	ENST00000601354	ENST00000556284		ChiTaRS3.1			BG180332	COLGALT1	chr19	17692709	+	MTHFD1	chr14	64913313	-
intron-intron	ENST00000495893	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000495893	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000495893	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000494943	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000494943	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000494943	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000467570	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000467570	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000467570	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000474275	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000474275	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000474275	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000497658	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000497658	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000497658	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000481639	ENST00000494674		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000481639	ENST00000337659		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
intron-intron	ENST00000481639	ENST00000538861		ChiTaRS3.1			AA582722	PHC3	chr3	169845024	+	PRPF4B	chr6	4052516	-
3UTR-intron	ENST00000280154	ENST00000548946		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-3UTR	ENST00000280154	ENST00000318066		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-3UTR	ENST00000280154	ENST00000550657		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-intron	ENST00000280154	ENST00000549833		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-intron	ENST00000280154	ENST00000552442		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-intron	ENST00000393104	ENST00000548946		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-3UTR	ENST00000393104	ENST00000318066		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-3UTR	ENST00000393104	ENST00000550657		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-intron	ENST00000393104	ENST00000549833		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
3UTR-intron	ENST00000393104	ENST00000552442		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-intron	ENST00000481353	ENST00000548946		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-3UTR	ENST00000481353	ENST00000318066		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-3UTR	ENST00000481353	ENST00000550657		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-intron	ENST00000481353	ENST00000549833		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-intron	ENST00000481353	ENST00000552442		ChiTaRS3.1			BE076082	PDCD4	chr10	112658151	-	UBE2N	chr12	93802766	+
intron-3UTR	ENST00000318006	ENST00000253408		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-3UTR	ENST00000318006	ENST00000588735		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000318006	ENST00000435360		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000318006	ENST00000586793		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000318006	ENST00000591327		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-3UTR	ENST00000348544	ENST00000253408		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-3UTR	ENST00000348544	ENST00000588735		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000348544	ENST00000435360		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000348544	ENST00000586793		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000348544	ENST00000591327		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-3UTR	ENST00000568357	ENST00000253408		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-3UTR	ENST00000568357	ENST00000588735		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000568357	ENST00000435360		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000568357	ENST00000586793		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000568357	ENST00000591327		ChiTaRS3.1			BE700242	VPS39	chr15	42451874	+	GFAP	chr17	42984710	-
intron-intron	ENST00000477496	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000477496	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000477496	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000460856	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000460856	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000460856	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000240874	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000240874	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000240874	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000360013	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000360013	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000360013	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000393496	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000393496	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000393496	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000291478	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000291478	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000291478	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000428018	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000428018	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000428018	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000459915	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000459915	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000459915	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000462213	ENST00000279575		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000462213	ENST00000535904		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000462213	ENST00000445719		ChiTaRS3.1			BG994662	KALRN	chr3	123979233	+	PRB4	chr12	11428012	+
intron-intron	ENST00000275766	ENST00000493293		ChiTaRS3.1			AA928552	ZC3HAV1L	chr7	138720626	-	LAMC2	chr1	183206640	-
intron-intron	ENST00000275766	ENST00000264144		ChiTaRS3.1			AA928552	ZC3HAV1L	chr7	138720626	-	LAMC2	chr1	183206640	-
intron-intron	ENST00000275766	ENST00000461729		ChiTaRS3.1			AA928552	ZC3HAV1L	chr7	138720626	-	LAMC2	chr1	183206640	-
intron-3CDS	ENST00000371531	ENST00000537045		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
intron-3CDS	ENST00000371531	ENST00000263196		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
intron-3UTR	ENST00000371531	ENST00000545799		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
intron-intron	ENST00000371531	ENST00000473832		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
Frame-shit	ENST00000224356	ENST00000537045		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
Frame-shit	ENST00000224356	ENST00000263196		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5CDS-3UTR	ENST00000224356	ENST00000545799		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5CDS-intron	ENST00000224356	ENST00000473832		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5UTR-3CDS	ENST00000394139	ENST00000537045		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5UTR-3CDS	ENST00000394139	ENST00000263196		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5UTR-3UTR	ENST00000394139	ENST00000545799		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
5UTR-intron	ENST00000394139	ENST00000473832		ChiTaRS3.1			BE350062	CYP26A1	chr10	94833707	-	DGCR2	chr22	19029387	+
intron-5UTR	ENST00000544260	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000544260	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381869	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381869	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381861	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381861	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000262102	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000262102	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000519263	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000519263	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000400046	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000400046	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000297488	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000297488	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000518713	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000518713	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381862	ENST00000257570		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-5UTR	ENST00000381862	ENST00000339275		ChiTaRS3.1			AF063612	MTUS1	chr8	17612513	+	OASL	chr12	121476959	-
intron-intron	ENST00000320672	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000320672	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000320672	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000320672	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000320672	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000320672	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000509053	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000514493	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000510060	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000505980	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000320672		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000509053		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000514493		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000510060		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000505980		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000515395	ENST00000515395		ChiTaRS3.1			BG996512	SSBP2	chr5	80906385	+	SSBP2	chr5	80906486	-
intron-intron	ENST00000296051	ENST00000550418		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000553186		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000547372		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000422070		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000535565		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000547427		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000552089		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000547338		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000436368		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000311745		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000355637		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000296051	ENST00000340209		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000550418		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000553186		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000547372		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000422070		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000535565		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000547427		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000552089		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000547338		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000436368		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000311745		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000355637		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000460120	ENST00000340209		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000550418		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000553186		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000547372		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000422070		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000535565		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000547427		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000552089		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000547338		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000436368		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000311745		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000355637		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000494327	ENST00000340209		ChiTaRS3.1			BI040582	HPS3	chr3	148888591	-	RBFOX1	chr16	6236657	+
intron-intron	ENST00000220853	ENST00000220853		ChiTaRS3.1			BE180402	EMC2	chr8	109495944	+	EMC2	chr8	109496026	-
intron-intron	ENST00000220853	ENST00000520294		ChiTaRS3.1			BE180402	EMC2	chr8	109495944	+	EMC2	chr8	109496026	-
intron-intron	ENST00000520294	ENST00000220853		ChiTaRS3.1			BE180402	EMC2	chr8	109495944	+	EMC2	chr8	109496026	-
intron-intron	ENST00000520294	ENST00000520294		ChiTaRS3.1			BE180402	EMC2	chr8	109495944	+	EMC2	chr8	109496026	-
intron-3UTR	ENST00000426898	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000426898	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000426898	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-3UTR	ENST00000425752	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000425752	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000425752	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-3UTR	ENST00000423947	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000423947	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000423947	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-3UTR	ENST00000435642	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000435642	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000435642	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-3UTR	ENST00000320560	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-intron	ENST00000320560	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-intron	ENST00000320560	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-3UTR	ENST00000441606	ENST00000254101		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-intron	ENST00000441606	ENST00000496858		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
3UTR-intron	ENST00000441606	ENST00000425272		ChiTaRS3.1			AA836812	ANO6	chr12	45825749	-	PRKAB2	chr1	146626712	+
intron-intron	ENST00000369244	ENST00000346329		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000369244	ENST00000301843		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000369244	ENST00000527622		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000369244	ENST00000376561		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000369244	ENST00000538675		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000229971	ENST00000346329		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000229971	ENST00000301843		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000229971	ENST00000527622		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000229971	ENST00000376561		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000229971	ENST00000538675		ChiTaRS3.1			BF354192	FBXL4	chr6	99391723	+	CTTN	chr11	70268184	-
intron-intron	ENST00000227495	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000227495	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000444328	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000356132	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000530591	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534083	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000392669	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-intron	ENST00000526756	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000526727	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000449406	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000532243	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000351293		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000322635		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000394762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000423381		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000322680		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000305762		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000372765		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000472912		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
intron-intron	ENST00000534457	ENST00000444854		ChiTaRS3.1			AW842632	ST3GAL4	chr11	126275597	+	CAMK2G	chr10	75574763	+
3UTR-3UTR	ENST00000300452	ENST00000300452		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000300452	ENST00000609948		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000300452	ENST00000608951		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000300452	ENST00000372875		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-3UTR	ENST00000300452	ENST00000461102		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000609948	ENST00000300452		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000609948	ENST00000609948		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000609948	ENST00000608951		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000609948	ENST00000372875		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000609948	ENST00000461102		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000608951	ENST00000300452		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000608951	ENST00000609948		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000608951	ENST00000608951		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000608951	ENST00000372875		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000608951	ENST00000461102		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000372875	ENST00000300452		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000372875	ENST00000609948		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000372875	ENST00000608951		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000372875	ENST00000372875		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-3UTR	ENST00000372875	ENST00000461102		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-3UTR	ENST00000461102	ENST00000300452		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000461102	ENST00000609948		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000461102	ENST00000608951		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-intron	ENST00000461102	ENST00000372875		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
3UTR-3UTR	ENST00000461102	ENST00000461102		ChiTaRS3.1			BE151922	COQ4	chr9	131095962	-	COQ4	chr9	131096072	+
intron-intron	ENST00000396153	ENST00000330430		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000371374		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000306764		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000405162		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000330430		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000371374		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000306764		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000405162		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000330430		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000371374		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000306764		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000405162		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000330430		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000371374		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000306764		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000405162		ChiTaRS3.1			BF962592	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
3UTR-intron	ENST00000373433	ENST00000373297		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
3UTR-intron	ENST00000373433	ENST00000314607		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
3UTR-intron	ENST00000373433	ENST00000482131		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
intron-intron	ENST00000471511	ENST00000373297		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
intron-intron	ENST00000471511	ENST00000314607		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
intron-intron	ENST00000471511	ENST00000482131		ChiTaRS3.1			AA626232	RPRD1B	chr20	36720466	-	ZMYM4	chr1	35817026	+
intron-intron	ENST00000261182	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000261182	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000393263	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000393263	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000431879	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000431879	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000547773	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000547773	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000544816	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000544816	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000542344	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000542344	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000535020	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000535020	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000549596	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000549596	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000547993	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000547993	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000552342	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000552342	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000548044	ENST00000285018		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
intron-intron	ENST00000548044	ENST00000497808		ChiTaRS3.1			BF895812	NAP1L1	chr12	76453588	-	WNT7A	chr3	13898310	+
3UTR-intron	ENST00000354177	ENST00000019019		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000354177	ENST00000348411		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000354177	ENST00000396894		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000354177	ENST00000456787		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000354177	ENST00000496365		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000361547	ENST00000019019		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000361547	ENST00000348411		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000361547	ENST00000396894		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000361547	ENST00000456787		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000361547	ENST00000496365		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000374315	ENST00000019019		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000374315	ENST00000348411		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000374315	ENST00000396894		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000374315	ENST00000456787		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
3UTR-intron	ENST00000374315	ENST00000496365		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000494537	ENST00000019019		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000494537	ENST00000348411		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000494537	ENST00000396894		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000494537	ENST00000456787		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000494537	ENST00000496365		ChiTaRS3.1			CN304822	SEPN1	chr1	26144638	-	FTSJ1	chrX	48340785	+
intron-intron	ENST00000588240	ENST00000368073		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000326837		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000368074		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000608310		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000556710		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000610139		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000588240	ENST00000475733		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000368073		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000326837		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000368074		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000608310		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000556710		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000610139		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000592237	ENST00000475733		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000368073		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000326837		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000368074		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000608310		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000556710		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000610139		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
intron-intron	ENST00000311979	ENST00000475733		ChiTaRS3.1			AI343022	TAF15	chr17	34171227	+	DCAF8	chr1	160247476	+
3UTR-intron	ENST00000341529	ENST00000327921		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000262233		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000334192		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000556758		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000327921		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000262233		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000334192		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000556758		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000327921		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000262233		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000334192		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000556758		ChiTaRS3.1			BG005262	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
In-frame	ENST00000405201	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000405201	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000405201	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000405201	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000404621	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000404621	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000404621	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000404621	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000404121	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000404121	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000404121	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000404121	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000356219	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000356219	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000356219	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000356219	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000397355	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000397355	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000397355	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000397355	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000429285	ENST00000338970		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
Frame-shit	ENST00000429285	ENST00000396203		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-3UTR	ENST00000429285	ENST00000416518		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
5CDS-intron	ENST00000429285	ENST00000461368		ChiTaRS3.1			BC051312	NCOR2	chr12	124904505	-	RPL14	chr3	40503539	+
intron-intron	ENST00000327300	ENST00000327300		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000327300	ENST00000307714		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000327300	ENST00000492989		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000307714	ENST00000327300		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000307714	ENST00000307714		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000307714	ENST00000492989		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000492989	ENST00000327300		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000492989	ENST00000307714		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-intron	ENST00000492989	ENST00000492989		ChiTaRS3.1			BF962242	KHDRBS1	chr1	32482300	-	KHDRBS1	chr1	32482185	+
intron-3CDS	ENST00000425441	ENST00000368738		ChiTaRS3.1			BI020912	CCDC12	chr3	47007499	-	S100A9	chr1	153333305	+
intron-3CDS	ENST00000292314	ENST00000368738		ChiTaRS3.1			BI020912	CCDC12	chr3	47007499	-	S100A9	chr1	153333305	+
intron-3CDS	ENST00000546280	ENST00000368738		ChiTaRS3.1			BI020912	CCDC12	chr3	47007499	-	S100A9	chr1	153333305	+
intron-3CDS	ENST00000605358	ENST00000368738		ChiTaRS3.1			BI020912	CCDC12	chr3	47007499	-	S100A9	chr1	153333305	+
intron-intron	ENST00000276185	ENST00000330165		ChiTaRS3.1			AW590132	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000276185	ENST00000369307		ChiTaRS3.1			AW590132	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000477796	ENST00000330165		ChiTaRS3.1			AW590132	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000477796	ENST00000369307		ChiTaRS3.1			AW590132	FRMPD3	chrX	106848223	-	RBM8A	chr1	145507770	-
intron-intron	ENST00000382496	ENST00000267260		ChiTaRS3.1			BF961792	SEMA5A	chr5	9455913	-	SRRM4	chr12	119457057	-
intron-intron	ENST00000382496	ENST00000537597		ChiTaRS3.1			BF961792	SEMA5A	chr5	9455913	-	SRRM4	chr12	119457057	-
intron-3CDS	ENST00000287912	ENST00000490882		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000429972		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000295956		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000358537		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000357272		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000348383		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000493452		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000287912	ENST00000419752		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000287912	ENST00000484981		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000490882		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000429972		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000295956		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000358537		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000357272		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000348383		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000493452		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000401878	ENST00000419752		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000401878	ENST00000484981		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000490882		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000429972		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000295956		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000358537		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000357272		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000348383		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000493452		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000392759	ENST00000419752		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000392759	ENST00000484981		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000490882		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000429972		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000295956		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000358537		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000357272		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000348383		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000493452		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000486747	ENST00000419752		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000486747	ENST00000484981		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000490882		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000429972		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000295956		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000358537		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000357272		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000348383		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000493452		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-3CDS	ENST00000341148	ENST00000419752		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000341148	ENST00000484981		ChiTaRS3.1			BF741912	RBM33	chr7	155501758	-	FLNB	chr3	58121724	+
intron-intron	ENST00000304613	ENST00000304613		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000304613	ENST00000368572		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000304613	ENST00000368571		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000304613	ENST00000530127		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368572	ENST00000304613		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368572	ENST00000368572		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368572	ENST00000368571		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368572	ENST00000530127		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368571	ENST00000304613		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368571	ENST00000368572		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368571	ENST00000368571		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000368571	ENST00000530127		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000530127	ENST00000304613		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000530127	ENST00000368572		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000530127	ENST00000368571		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-intron	ENST00000530127	ENST00000530127		ChiTaRS3.1			AI680882	KNDC1	chr10	135037495	-	KNDC1	chr10	135037600	+
intron-3UTR	ENST00000322507	ENST00000322507		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000322507	ENST00000345356		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000322507	ENST00000416123		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000322507	ENST00000483888		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000322507	ENST00000511023		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-3UTR	ENST00000345356	ENST00000322507		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000345356	ENST00000345356		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000345356	ENST00000416123		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000345356	ENST00000483888		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000345356	ENST00000511023		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-3UTR	ENST00000416123	ENST00000322507		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000416123	ENST00000345356		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000416123	ENST00000416123		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000416123	ENST00000483888		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000416123	ENST00000511023		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-3UTR	ENST00000483888	ENST00000322507		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000483888	ENST00000345356		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000483888	ENST00000416123		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000483888	ENST00000483888		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000483888	ENST00000511023		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-3UTR	ENST00000511023	ENST00000322507		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000511023	ENST00000345356		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000511023	ENST00000416123		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000511023	ENST00000483888		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000511023	ENST00000511023		ChiTaRS3.1			BF154542	COL12A1	chr6	75795888	+	COL12A1	chr6	75795958	-
intron-intron	ENST00000353258	ENST00000405486		ChiTaRS3.1			AW817382	GDE1	chr16	19520186	-	RANGAP1	chr22	41673534	+
intron-intron	ENST00000353258	ENST00000356244		ChiTaRS3.1			AW817382	GDE1	chr16	19520186	-	RANGAP1	chr22	41673534	+
intron-intron	ENST00000353258	ENST00000455915		ChiTaRS3.1			AW817382	GDE1	chr16	19520186	-	RANGAP1	chr22	41673534	+
intron-intron	ENST00000353258	ENST00000407260		ChiTaRS3.1			AW817382	GDE1	chr16	19520186	-	RANGAP1	chr22	41673534	+
intron-intron	ENST00000474485	ENST00000587394		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-5UTR	ENST00000474485	ENST00000587962		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-5UTR	ENST00000474485	ENST00000586608		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-5UTR	ENST00000474485	ENST00000589097		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-5UTR	ENST00000474485	ENST00000591099		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-5UTR	ENST00000474485	ENST00000326631		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
intron-intron	ENST00000474485	ENST00000589791		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-intron	ENST00000451315	ENST00000587394		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-5UTR	ENST00000451315	ENST00000587962		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-5UTR	ENST00000451315	ENST00000586608		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-5UTR	ENST00000451315	ENST00000589097		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-5UTR	ENST00000451315	ENST00000591099		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-5UTR	ENST00000451315	ENST00000326631		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
5UTR-intron	ENST00000451315	ENST00000589791		ChiTaRS3.1			BC078672	NOL7	chr6	13615569	-	PLEKHJ1	chr19	2236292	-
Frame-shit	ENST00000299767	ENST00000299767		ChiTaRS3.1			AK025862	HSP90B1	chr12	104333328	+	HSP90B1	chr12	104331548	+
intron-3CDS	ENST00000447404	ENST00000492406		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3UTR	ENST00000447404	ENST00000460713		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3CDS	ENST00000348403	ENST00000492406		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3UTR	ENST00000348403	ENST00000460713		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3CDS	ENST00000360998	ENST00000492406		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3UTR	ENST00000360998	ENST00000460713		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3CDS	ENST00000530364	ENST00000492406		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3UTR	ENST00000530364	ENST00000460713		ChiTaRS3.1			BF814152	STRBP	chr9	125901859	+	SLC35A5	chr3	112282345	-
intron-3UTR	ENST00000401084	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000401084	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000401084	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000401084	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000401084	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000401084	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000264203	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264203	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264203	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264203	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000264203	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264203	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000375142	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375142	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375142	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375142	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000375142	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375142	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000433834	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000433834	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000433834	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000433834	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000433834	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000433834	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000264202	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264202	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264202	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264202	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000264202	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000264202	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000482808	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000482808	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000482808	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000482808	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000482808	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000482808	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000375144	ENST00000337132		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375144	ENST00000504551		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375144	ENST00000457722		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375144	ENST00000406746		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3UTR	ENST00000375144	ENST00000443980		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-intron	ENST00000375144	ENST00000486390		ChiTaRS3.1			BF946572	CAPZB	chr1	19719566	+	NECAP2	chr1	16785692	+
intron-3CDS	ENST00000406486	ENST00000378043		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3CDS	ENST00000406486	ENST00000378042		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000406486	ENST00000534553		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000406486	ENST00000301774		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000406486	ENST00000435278		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000406486	ENST00000449131		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000406486	ENST00000526988		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3CDS	ENST00000358431	ENST00000378043		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3CDS	ENST00000358431	ENST00000378042		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000358431	ENST00000534553		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000358431	ENST00000301774		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000358431	ENST00000435278		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000358431	ENST00000449131		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000358431	ENST00000526988		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3CDS	ENST00000401395	ENST00000378043		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3CDS	ENST00000401395	ENST00000378042		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000401395	ENST00000534553		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000401395	ENST00000301774		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000401395	ENST00000435278		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000401395	ENST00000449131		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-intron	ENST00000401395	ENST00000526988		ChiTaRS3.1			BG950652	KIAA1671	chr22	25473362	-	BEST1	chr11	61730296	+
intron-3UTR	ENST00000520539	ENST00000520539		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000520539	ENST00000220959		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000520539	ENST00000518205		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000520539	ENST00000521922		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000520539	ENST00000519528		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-3UTR	ENST00000220959	ENST00000520539		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000220959	ENST00000220959		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000220959	ENST00000518205		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000220959	ENST00000521922		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000220959	ENST00000519528		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-3UTR	ENST00000518205	ENST00000520539		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000518205	ENST00000220959		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000518205	ENST00000518205		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000518205	ENST00000521922		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000518205	ENST00000519528		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-3UTR	ENST00000521922	ENST00000520539		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000521922	ENST00000220959		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000521922	ENST00000518205		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000521922	ENST00000521922		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000521922	ENST00000519528		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-3UTR	ENST00000519528	ENST00000520539		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000519528	ENST00000220959		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000519528	ENST00000518205		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000519528	ENST00000521922		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000519528	ENST00000519528		ChiTaRS3.1			BU677222	UBR5	chr8	103265642	+	UBR5	chr8	103265871	-
intron-intron	ENST00000349714	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000349714	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000359226	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000359226	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374384	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374384	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374380	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374380	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374385	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374385	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374377	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000374377	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000397556	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000397556	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000407996	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000407996	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000540457	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000540457	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000542501	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000542501	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000397554	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000397554	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000491125	ENST00000309424		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000491125	ENST00000589804		ChiTaRS3.1			BG897372	UQCC1	chr20	33970589	-	CD3EAP	chr19	45911085	-
intron-intron	ENST00000582151	ENST00000376694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000376688		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000552062		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000414873		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000551636		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000485505		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000548732		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000421984		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000548642		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000476225		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000550694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000427091		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000548212		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000498654		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000550702		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000429524		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000552676		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000493180		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000550969		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000259930		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000549109		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000492678		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000548653		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000431059		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000550400		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000490570		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000546888		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000430090		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000552836		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000582151	ENST00000469125		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000376694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000376688		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000552062		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000414873		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000551636		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000485505		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000548732		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000421984		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000548642		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000476225		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000550694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000427091		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000548212		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000498654		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000550702		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000429524		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000552676		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000493180		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000550969		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000259930		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000549109		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000492678		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000548653		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000431059		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000550400		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000490570		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000546888		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000430090		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000552836		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000250124	ENST00000469125		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000376694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000376688		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000552062		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000414873		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000551636		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000485505		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000548732		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000421984		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000548642		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000476225		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000550694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000427091		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000548212		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000498654		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000550702		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000429524		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000552676		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000493180		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000550969		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000259930		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000549109		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000492678		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000548653		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000431059		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000550400		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000490570		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000546888		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000430090		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000552836		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000396501	ENST00000469125		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000376694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000376688		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000552062		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000414873		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000551636		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000485505		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000548732		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000421984		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000548642		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000476225		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000550694		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000427091		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000548212		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000498654		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000550702		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000429524		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000552676		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000493180		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000550969		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000259930		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000549109		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000492678		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000548653		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000431059		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000550400		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000490570		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000546888		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000430090		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000552836		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
5CDS-intron	ENST00000423172	ENST00000469125		ChiTaRS3.1			BF910362	MPDU1	chr17	7490536	-	TRIM15	chr6	1466214	-
intron-intron	ENST00000393701	ENST00000393701		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000393701	ENST00000568461		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000393701	ENST00000288040		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000393701	ENST00000449317		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000568461	ENST00000393701		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000568461	ENST00000568461		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000568461	ENST00000288040		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000568461	ENST00000449317		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000288040	ENST00000393701		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000288040	ENST00000568461		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000288040	ENST00000288040		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000288040	ENST00000449317		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000449317	ENST00000393701		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000449317	ENST00000568461		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000449317	ENST00000288040		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000449317	ENST00000449317		ChiTaRS3.1			AU144432	CLEC18A	chr16	70190806	-	CLEC18A	chr16	70191074	-
intron-intron	ENST00000392869	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392869	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409214	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000392867	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000409298	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000344850	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000542155	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000241391	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000463875	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000392869		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000409214		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000392867		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000409298		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000344850		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000542155		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000241391		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000463875		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-intron	ENST00000467352	ENST00000467352		ChiTaRS3.1			AA579552	GTDC1	chr2	144809356	+	GTDC1	chr2	144809317	-
intron-3CDS	ENST00000264818	ENST00000269260		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000574954		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000264818	ENST00000570718		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000264818	ENST00000346341		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000572457		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000381488		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000412477		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000575877		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000264818	ENST00000571206		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-3CDS	ENST00000524462	ENST00000269260		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000574954		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000524462	ENST00000570718		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000524462	ENST00000346341		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000572457		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000381488		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000412477		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000575877		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000524462	ENST00000571206		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-3CDS	ENST00000525621	ENST00000269260		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000574954		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000525621	ENST00000570718		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000525621	ENST00000346341		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000572457		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000381488		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000412477		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000575877		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000525621	ENST00000571206		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-3CDS	ENST00000529370	ENST00000269260		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000574954		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000529370	ENST00000570718		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000529370	ENST00000346341		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000572457		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000381488		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000412477		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000575877		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529370	ENST00000571206		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-3CDS	ENST00000529422	ENST00000269260		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000574954		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000529422	ENST00000570718		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-intron	ENST00000529422	ENST00000346341		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000572457		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000381488		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000412477		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000575877		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
intron-5UTR	ENST00000529422	ENST00000571206		ChiTaRS3.1			BI024982	TYK2	chr19	10472807	+	ARRB2	chr17	4620996	+
In-frame	ENST00000286398	ENST00000286398		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000374793		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000303219		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000374787		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000286398		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000374793		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000303219		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000374787		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000286398		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000374793		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000303219		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000374787		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000286398		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000374793		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000303219		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000374787		ChiTaRS3.1			AA769582	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000332149	ENST00000539068		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000332149	ENST00000536438		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000332149	ENST00000357266		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000332149	ENST00000540787		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000332149	ENST00000542713		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000539068		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000536438		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000357266		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000398585	ENST00000540787		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000398585	ENST00000542713		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000539068		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000536438		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000357266		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000458356	ENST00000540787		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000458356	ENST00000542713		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000539068		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000536438		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000357266		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-5UTR	ENST00000497881	ENST00000540787		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-5UTR	ENST00000497881	ENST00000542713		ChiTaRS3.1			HM245390	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-intron	ENST00000371927	ENST00000371927		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371927	ENST00000371926		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371927	ENST00000461650		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371927	ENST00000371924		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371927	ENST00000371922		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371926	ENST00000371927		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371926	ENST00000371926		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371926	ENST00000461650		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371926	ENST00000371924		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371926	ENST00000371922		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000461650	ENST00000371927		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000461650	ENST00000371926		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000461650	ENST00000461650		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000461650	ENST00000371924		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000461650	ENST00000371922		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371924	ENST00000371927		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371924	ENST00000371926		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371924	ENST00000461650		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371924	ENST00000371924		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371924	ENST00000371922		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371922	ENST00000371927		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371922	ENST00000371926		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371922	ENST00000461650		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371922	ENST00000371924		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000371922	ENST00000371922		ChiTaRS3.1			AA687832	STAMBPL1	chr10	90695018	+	STAMBPL1	chr10	90697991	-
intron-intron	ENST00000545145	ENST00000265395		ChiTaRS3.1			BG003402	RBM19	chr12	114315587	+	HIBADH	chr7	27693762	-
intron-intron	ENST00000392561	ENST00000265395		ChiTaRS3.1			BG003402	RBM19	chr12	114315587	+	HIBADH	chr7	27693762	-
intron-intron	ENST00000261741	ENST00000265395		ChiTaRS3.1			BG003402	RBM19	chr12	114315587	+	HIBADH	chr7	27693762	-
intron-intron	ENST00000553232	ENST00000265395		ChiTaRS3.1			BG003402	RBM19	chr12	114315587	+	HIBADH	chr7	27693762	-
intron-3UTR	ENST00000402198	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402198	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402198	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402198	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000402198	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000402198	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402466	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402466	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402466	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000402466	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000402466	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000402466	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000406341	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000406341	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000406341	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000406341	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000406341	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000406341	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000407969	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000407969	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000407969	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000407969	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000407969	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000407969	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000302463	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000302463	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000302463	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000302463	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000302463	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000302463	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000488236	ENST00000394126		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000488236	ENST00000356271		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000488236	ENST00000394128		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-3UTR	ENST00000488236	ENST00000394127		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000488236	ENST00000501516		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
intron-intron	ENST00000488236	ENST00000479829		ChiTaRS3.1			BG108372	SETD5	chr3	9510489	+	MED24	chr17	38175446	-
In-frame	ENST00000588847	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000588847	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000588061	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000588061	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000335749	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000335749	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000301624	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
In-frame	ENST00000301624	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
Frame-shit	ENST00000541771	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
Frame-shit	ENST00000541771	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
Frame-shit	ENST00000544502	ENST00000476832		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
Frame-shit	ENST00000544502	ENST00000319033		ChiTaRS3.1			AI371982	TNRC6C	chr17	76100746	-	ALG2	chr9	101980528	+
intron-3UTR	ENST00000335953	ENST00000376281		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000335953	ENST00000376263		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000335953	ENST00000376264		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000335953	ENST00000351839		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000335953	ENST00000360384		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000392996	ENST00000376281		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000392996	ENST00000376263		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000392996	ENST00000376264		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000392996	ENST00000351839		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000392996	ENST00000360384		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000535379	ENST00000376281		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000535379	ENST00000376263		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000535379	ENST00000376264		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000535379	ENST00000351839		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-3UTR	ENST00000535379	ENST00000360384		ChiTaRS3.1			AK126422	ZBTB16	chr11	113967313	+	HNRNPK	chr9	86583892	-
intron-intron	ENST00000267485	ENST00000372572		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000267485	ENST00000372573		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000267485	ENST00000361346		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000267485	ENST00000361776		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000267485	ENST00000545068		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000267485	ENST00000372571		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000372572		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000372573		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000361346		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000361776		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000545068		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
intron-intron	ENST00000334342	ENST00000372571		ChiTaRS3.1			AI214272	C14orf37	chr14	58734013	-	FOXJ3	chr1	42669419	-
3UTR-intron	ENST00000266069	ENST00000265245		ChiTaRS3.1			BE645772	GID8	chr20	61576826	-	LSG1	chr3	194372939	+
3UTR-intron	ENST00000266069	ENST00000480853		ChiTaRS3.1			BE645772	GID8	chr20	61576826	-	LSG1	chr3	194372939	+
intron-intron	ENST00000497101	ENST00000265245		ChiTaRS3.1			BE645772	GID8	chr20	61576826	-	LSG1	chr3	194372939	+
intron-intron	ENST00000497101	ENST00000480853		ChiTaRS3.1			BE645772	GID8	chr20	61576826	-	LSG1	chr3	194372939	+
intron-3CDS	ENST00000427662	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000427662	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000369774	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000369774	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000355946	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000355946	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000315994	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000315994	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000540321	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000540321	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000538130	ENST00000288221		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-intron	ENST00000538130	ENST00000486496		ChiTaRS3.1			BQ892422	SH3PXD2A	chr10	105402591	-	ERC2	chr3	56114933	-
intron-3CDS	ENST00000361157	ENST00000399537		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-3CDS	ENST00000361157	ENST00000430969		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-intron	ENST00000361157	ENST00000399434		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-3CDS	ENST00000339145	ENST00000399537		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-3CDS	ENST00000339145	ENST00000430969		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-intron	ENST00000339145	ENST00000399434		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-3CDS	ENST00000362020	ENST00000399537		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-3CDS	ENST00000362020	ENST00000430969		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-intron	ENST00000362020	ENST00000399434		ChiTaRS3.1			BP320632	IFI6	chr1	27994791	-	TNRC18	chr7	5413712	-
intron-intron	ENST00000247087	ENST00000322366		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000247087	ENST00000295888		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000247087	ENST00000512267		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000374011	ENST00000322366		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000374011	ENST00000295888		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000374011	ENST00000512267		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000480033	ENST00000322366		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000480033	ENST00000295888		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000480033	ENST00000512267		ChiTaRS3.1			CV376002	AHDC1	chr1	27923271	+	WDFY3	chr4	85607866	-
intron-intron	ENST00000375742	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376059		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376049		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000414149		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000419376		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000425748		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000416422		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000413349		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000415830		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383474		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000488491		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383473		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000440907		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000549432		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000424944		ChiTaRS3.1			BM842172	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-3CDS	ENST00000521861	ENST00000521861		ChiTaRS3.1			AA715462	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000521861	ENST00000276682		ChiTaRS3.1			AA715462	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000276682	ENST00000521861		ChiTaRS3.1			AA715462	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000276682	ENST00000276682		ChiTaRS3.1			AA715462	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000357056	ENST00000357056		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-3CDS	ENST00000357056	ENST00000328459		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-5UTR	ENST00000357056	ENST00000554654		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-3CDS	ENST00000328459	ENST00000357056		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-3CDS	ENST00000328459	ENST00000328459		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-5UTR	ENST00000328459	ENST00000554654		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-3CDS	ENST00000554654	ENST00000357056		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-3CDS	ENST00000554654	ENST00000328459		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-5UTR	ENST00000554654	ENST00000554654		ChiTaRS3.1			BU742332	TTC7B	chr14	91007520	+	TTC7B	chr14	91059855	-
intron-intron	ENST00000346248	ENST00000525754		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000346248	ENST00000310046		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000346248	ENST00000531969		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000346248	ENST00000529195		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000346248	ENST00000524637		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000346248	ENST00000531036		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000525754		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000310046		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000531969		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000529195		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000524637		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000421115	ENST00000531036		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000525754		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000310046		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000531969		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000529195		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000524637		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000462406	ENST00000531036		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000525754		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000310046		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000531969		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000529195		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000524637		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000435907	ENST00000531036		ChiTaRS3.1			BE830532	CHST15	chr10	125768450	+	RBM4B	chr11	66438295	+
intron-intron	ENST00000448662	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000448662	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000431808	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000284776	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000437304	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000319471	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000449407	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000355634	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000393528	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000418609	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000448662		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000431808		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000284776		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000437304		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000319471		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000449407		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000355634		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000393528		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000418609		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-intron	ENST00000498125	ENST00000498125		ChiTaRS3.1			AI278482	SORBS2	chr4	186582160	+	SORBS2	chr4	186580894	+
intron-3CDS	ENST00000258530	ENST00000252699		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000258530	ENST00000424234		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000258530	ENST00000390009		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000258530	ENST00000497637		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-3CDS	ENST00000539978	ENST00000252699		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000539978	ENST00000424234		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000539978	ENST00000390009		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000539978	ENST00000497637		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-3CDS	ENST00000546731	ENST00000252699		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000546731	ENST00000424234		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000546731	ENST00000390009		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000546731	ENST00000497637		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-3CDS	ENST00000551662	ENST00000252699		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000551662	ENST00000424234		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000551662	ENST00000390009		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000551662	ENST00000497637		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-3CDS	ENST00000549573	ENST00000252699		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000549573	ENST00000424234		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000549573	ENST00000390009		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000549573	ENST00000497637		ChiTaRS3.1			BG999502	APPL2	chr12	105596992	-	ACTN4	chr19	39208640	+
intron-intron	ENST00000369825	ENST00000369825		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369811		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369815		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000337003		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000309579		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369825		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369811		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369815		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000337003		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000309579		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369825		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369811		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369815		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000337003		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000309579		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369825		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369811		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369815		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000337003		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000309579		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369825		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369811		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369815		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000337003		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000309579		ChiTaRS3.1			AW860822	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
3UTR-3CDS	ENST00000215368	ENST00000215368		ChiTaRS3.1			AJ007292	EFNA2	chr19	1300227	+	EFNA2	chr19	1295766	-
intron-3UTR	ENST00000351288	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000351288	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000351288	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000351288	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000453750	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000453750	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000453750	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000453750	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000409031	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000409031	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000409031	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000409031	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000431183	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000431183	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000431183	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000431183	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000443958	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000443958	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000443958	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000443958	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000339679	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000339679	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000339679	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000339679	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000452225	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000452225	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000452225	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000452225	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000426662	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000426662	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000426662	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000426662	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000473720	ENST00000373627		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-3UTR	ENST00000473720	ENST00000373616		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000473720	ENST00000471737		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000473720	ENST00000538808		ChiTaRS3.1			AK126162	SMPD4	chr2	130919680	-	MTCH1	chr6	36936476	-
intron-intron	ENST00000609713	ENST00000472193		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000609713	ENST00000428675		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000609713	ENST00000437704		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000288309	ENST00000472193		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000288309	ENST00000428675		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000288309	ENST00000437704		ChiTaRS3.1			AK058042	KCNJ6	chr21	39044824	-	PLCL1	chr2	198807010	+
intron-intron	ENST00000377869	ENST00000377869		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000377869	ENST00000220616		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000377869	ENST00000542445		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000377869	ENST00000519543		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000377869	ENST00000522523		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000220616	ENST00000377869		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000220616	ENST00000220616		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000220616	ENST00000542445		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000220616	ENST00000519543		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000220616	ENST00000522523		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000542445	ENST00000377869		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000542445	ENST00000220616		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000542445	ENST00000542445		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000542445	ENST00000519543		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000542445	ENST00000522523		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000519543	ENST00000377869		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000519543	ENST00000220616		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000519543	ENST00000542445		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000519543	ENST00000519543		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000519543	ENST00000522523		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000522523	ENST00000377869		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000522523	ENST00000220616		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000522523	ENST00000542445		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000522523	ENST00000519543		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000522523	ENST00000522523		ChiTaRS3.1			BF828012	TG	chr8	134011421	+	TG	chr8	134011163	-
intron-intron	ENST00000352896	ENST00000358344		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000506339		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000355836		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000514633		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000515193		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000506259		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000352896	ENST00000504898		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000358344		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000506339		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000355836		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000514633		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000515193		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000506259		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000368475	ENST00000504898		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000358344		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000506339		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000355836		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000514633		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000515193		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000506259		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000338891	ENST00000504898		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000358344		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000506339		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000355836		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000514633		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000515193		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000506259		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000521531	ENST00000504898		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000358344		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000506339		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000355836		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000514633		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000515193		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000506259		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
intron-intron	ENST00000522284	ENST00000504898		ChiTaRS3.1			BF362772	FAM184A	chr6	119373543	+	HNRNPAB	chr5	177633584	-
In-frame	ENST00000367763	ENST00000421834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
In-frame	ENST00000367763	ENST00000370769		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000312431		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000370754		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000370788		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000361203		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000244364		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-3UTR	ENST00000367763	ENST00000446842		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-5UTR	ENST00000367763	ENST00000340834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-intron	ENST00000367763	ENST00000370765		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
5CDS-intron	ENST00000367763	ENST00000518935		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3CDS	ENST00000367762	ENST00000421834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3CDS	ENST00000367762	ENST00000370769		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000312431		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000370754		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000370788		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000361203		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000244364		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000367762	ENST00000446842		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-5UTR	ENST00000367762	ENST00000340834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-intron	ENST00000367762	ENST00000370765		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-intron	ENST00000367762	ENST00000518935		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3CDS	ENST00000465717	ENST00000421834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3CDS	ENST00000465717	ENST00000370769		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000312431		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000370754		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000370788		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000361203		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000244364		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-3UTR	ENST00000465717	ENST00000446842		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-5UTR	ENST00000465717	ENST00000340834		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-intron	ENST00000465717	ENST00000370765		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-intron	ENST00000465717	ENST00000518935		ChiTaRS3.1			BG952262	GORAB	chr1	170521415	-	DST	chr6	56382351	+
intron-intron	ENST00000309060	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000309060	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000540170	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000540170	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000559234	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000559234	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000557816	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000557816	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000558993	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000558993	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000544979	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000544979	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000560361	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000560361	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000432768	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000432768	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-intron	ENST00000561291	ENST00000356805		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000561291	ENST00000333896		ChiTaRS3.1			BQ717652	ZHX3	chr20	39945290	-	SPTBN1	chr2	54889301	+
intron-3UTR	ENST00000394936	ENST00000305943		ChiTaRS3.1			BG996012	PSAP	chr10	73576217	-	RNF187	chr1	228682196	-
intron-3UTR	ENST00000394936	ENST00000482739		ChiTaRS3.1			BG996012	PSAP	chr10	73576217	-	RNF187	chr1	228682196	-
intron-3UTR	ENST00000394934	ENST00000305943		ChiTaRS3.1			BG996012	PSAP	chr10	73576217	-	RNF187	chr1	228682196	-
intron-3UTR	ENST00000394934	ENST00000482739		ChiTaRS3.1			BG996012	PSAP	chr10	73576217	-	RNF187	chr1	228682196	-
intron-3CDS	ENST00000286186	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000360132	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000272879	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000374650	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000346817	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000313728	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000448480	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-3CDS	ENST00000492363	ENST00000369582		ChiTaRS3.1			BE842422	CASP10	chr2	202061223	+	CGA	chr6	87796110	+
intron-intron	ENST00000393245	ENST00000393245		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000393245	ENST00000265388		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000393245	ENST00000482320		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000393245	ENST00000471234		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000393245	ENST00000471166		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000265388	ENST00000393245		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000265388	ENST00000265388		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000265388	ENST00000482320		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000265388	ENST00000471234		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000265388	ENST00000471166		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000482320	ENST00000393245		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000482320	ENST00000265388		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000482320	ENST00000482320		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000482320	ENST00000471234		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000482320	ENST00000471166		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471234	ENST00000393245		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471234	ENST00000265388		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471234	ENST00000482320		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471234	ENST00000471234		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471234	ENST00000471166		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471166	ENST00000393245		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471166	ENST00000265388		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471166	ENST00000482320		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471166	ENST00000471234		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000471166	ENST00000471166		ChiTaRS3.1			AW236972	TNPO3	chr7	128594476	-	TNPO3	chr7	128595684	-
intron-intron	ENST00000340437	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000340437	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000340437	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000340437	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000394888	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000394888	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000394888	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000394888	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000439958	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000439958	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000439958	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000439958	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000494016	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000494016	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000494016	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000494016	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000448745	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000448745	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000448745	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000448745	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000541963	ENST00000402714		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000541963	ENST00000544450		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000541963	ENST00000392920		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-5UTR	ENST00000541963	ENST00000555048		ChiTaRS3.1			BI767712	CPSF7	chr11	61197442	+	EVL	chr14	100531767	+
intron-intron	ENST00000539805	ENST00000539805		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000480436		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000337743		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000544472		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000539805		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000480436		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000337743		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000544472		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000539805		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000480436		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000337743		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000544472		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000539805		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000480436		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000337743		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000544472		ChiTaRS3.1			BF335872	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000452647	ENST00000452647		ChiTaRS3.1			BF127432	TSTD3	chr6	99991471	+	TSTD3	chr6	99991389	-
intron-intron	ENST00000367858	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000367858		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000524929		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000413996		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000237305		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000367857		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000528577		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000475719		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000489458		ChiTaRS3.1			BF351612	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000421834	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000421834	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370769	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370769	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000312431	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000312431	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370754	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370754	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370788	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370788	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000361203	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000361203	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000244364	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000244364	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000446842	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000446842	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000340834	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000340834	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370765	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000370765	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000518935	ENST00000356554		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000518935	ENST00000482811		ChiTaRS3.1			BF354622	DST	chr6	56329656	+	MAN1A2	chr1	117951099	-
intron-intron	ENST00000537971	ENST00000267485		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000537971	ENST00000334342		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000011898	ENST00000267485		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000011898	ENST00000334342		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000407263	ENST00000267485		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000407263	ENST00000334342		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000492305	ENST00000267485		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000492305	ENST00000334342		ChiTaRS3.1			AU121722	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
In-frame	ENST00000544301	ENST00000265239		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000544301	ENST00000455191		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000544301	ENST00000453254		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000544301	ENST00000480302		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
In-frame	ENST00000224237	ENST00000265239		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000224237	ENST00000455191		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000224237	ENST00000453254		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000224237	ENST00000480302		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
intron-3CDS	ENST00000485947	ENST00000265239		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
intron-intron	ENST00000485947	ENST00000455191		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
intron-intron	ENST00000485947	ENST00000453254		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
intron-intron	ENST00000485947	ENST00000480302		ChiTaRS3.1			CV328902	VIM	chr10	17276823	+	IQCG	chr3	197686891	-
5CDS-intron	ENST00000393043	ENST00000354371		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000393043	ENST00000392008		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000393043	ENST00000409334		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000393043	ENST00000409629		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000269122	ENST00000354371		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000269122	ENST00000392008		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000269122	ENST00000409334		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000269122	ENST00000409629		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000579456	ENST00000354371		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000579456	ENST00000392008		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000579456	ENST00000409334		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
5CDS-intron	ENST00000579456	ENST00000409629		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
intron-intron	ENST00000579815	ENST00000354371		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
intron-intron	ENST00000579815	ENST00000392008		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
intron-intron	ENST00000579815	ENST00000409334		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
intron-intron	ENST00000579815	ENST00000409629		ChiTaRS3.1			BM748992	CLTC	chr17	57759778	+	COPS8	chr2	237996146	+
intron-3CDS	ENST00000568047	ENST00000512596		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000568047	ENST00000341062		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000568047	ENST00000508504		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000320640	ENST00000512596		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000320640	ENST00000341062		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000320640	ENST00000508504		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000544001	ENST00000512596		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000544001	ENST00000341062		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-3CDS	ENST00000544001	ENST00000508504		ChiTaRS3.1			AI867902	ITFG1	chr16	47252077	+	TRIM60	chr4	165962478	-
intron-intron	ENST00000540797	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000540797	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000380324	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000268049	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000536001	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000539772	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
5CDS-intron	ENST00000558285	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000559711	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000540797		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000380324		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000268049		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000536001		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000539772		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000558285		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000559711		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000558218	ENST00000558218		ChiTaRS3.1			BE080252	USP3	chr15	63824842	-	USP3	chr15	63855207	-
intron-intron	ENST00000371222	ENST00000215882		ChiTaRS3.1			CD614312	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000451283		ChiTaRS3.1			CD614312	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000461267		ChiTaRS3.1			CD614312	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000221561	ENST00000221561		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-5UTR	ENST00000221561	ENST00000327141		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000221561	ENST00000592330		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000221561	ENST00000586839		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000327141	ENST00000221561		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-5UTR	ENST00000327141	ENST00000327141		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000327141	ENST00000592330		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000327141	ENST00000586839		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000592330	ENST00000221561		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-5UTR	ENST00000592330	ENST00000327141		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000592330	ENST00000592330		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000592330	ENST00000586839		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000586839	ENST00000221561		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-5UTR	ENST00000586839	ENST00000327141		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000586839	ENST00000592330		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
intron-intron	ENST00000586839	ENST00000586839		ChiTaRS3.1			AI358002	AES	chr19	3053398	-	AES	chr19	3062215	-
5CDS-intron	ENST00000372836	ENST00000390548		ChiTaRS3.1			AW867372	CNPY3	chr6	42897317	-	IGHG1	chr14	106322711	-
5CDS-intron	ENST00000394142	ENST00000390548		ChiTaRS3.1			AW867372	CNPY3	chr6	42897317	-	IGHG1	chr14	106322711	-
3UTR-intron	ENST00000255622	ENST00000361937		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
3UTR-intron	ENST00000255622	ENST00000401393		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
3UTR-intron	ENST00000255622	ENST00000561244		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
3UTR-intron	ENST00000496514	ENST00000361937		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
3UTR-intron	ENST00000496514	ENST00000401393		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
3UTR-intron	ENST00000496514	ENST00000561244		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
intron-intron	ENST00000429163	ENST00000361937		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
intron-intron	ENST00000429163	ENST00000401393		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
intron-intron	ENST00000429163	ENST00000561244		ChiTaRS3.1			BU741962	PDE6B	chr4	664297	-	INO80	chr15	41291127	+
intron-intron	ENST00000348850	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000348850	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000348850	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000348850	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000348850	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000355657	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000355657	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000355657	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000355657	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000355657	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000358038	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000358038	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000358038	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000358038	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000358038	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000356640	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000356640	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000356640	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000356640	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000356640	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000370046	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000370046	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000370046	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000370046	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000370046	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000343195	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000343195	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000343195	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000343195	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000343195	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000353068	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000353068	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000353068	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000353068	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000353068	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000461105	ENST00000327483		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000461105	ENST00000268679		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000461105	ENST00000448839		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000461105	ENST00000360302		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000461105	ENST00000436887		ChiTaRS3.1			BI025002	KCNIP2	chr10	103590054	+	CBFA2T3	chr16	89035337	-
intron-intron	ENST00000560410	ENST00000264710		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-intron	ENST00000560410	ENST00000462003		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-intron	ENST00000216802	ENST00000264710		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-intron	ENST00000216802	ENST00000462003		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-intron	ENST00000471700	ENST00000264710		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-intron	ENST00000471700	ENST00000462003		ChiTaRS3.1			AW997232	PSME2	chr14	24615821	+	RAB10	chr2	26298901	-
intron-3UTR	ENST00000324015	ENST00000296051		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000324015	ENST00000460120		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000324015	ENST00000494327		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-3UTR	ENST00000450523	ENST00000296051		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000450523	ENST00000460120		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000450523	ENST00000494327		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-3UTR	ENST00000382061	ENST00000296051		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000382061	ENST00000460120		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
intron-intron	ENST00000382061	ENST00000494327		ChiTaRS3.1			BG564112	SERPINF2	chr17	1646215	+	HPS3	chr3	148891066	-
Frame-shit	ENST00000295598	ENST00000295598		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
Frame-shit	ENST00000295598	ENST00000537345		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
Frame-shit	ENST00000295598	ENST00000369496		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5CDS-3UTR	ENST00000295598	ENST00000491156		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
Frame-shit	ENST00000537345	ENST00000295598		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
Frame-shit	ENST00000537345	ENST00000537345		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
Frame-shit	ENST00000537345	ENST00000369496		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5CDS-3UTR	ENST00000537345	ENST00000491156		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5UTR-3CDS	ENST00000369496	ENST00000295598		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5UTR-3CDS	ENST00000369496	ENST00000537345		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5UTR-3CDS	ENST00000369496	ENST00000369496		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
5UTR-3UTR	ENST00000369496	ENST00000491156		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
intron-3UTR	ENST00000491156	ENST00000491156		ChiTaRS3.1			BQ312492	ATP1A1	chr1	116926642	-	ATP1A1	chr1	116932144	+
intron-3CDS	ENST00000358602	ENST00000358602		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000358602	ENST00000509867		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000358602	ENST00000330838		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000509867	ENST00000358602		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000509867	ENST00000509867		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000509867	ENST00000330838		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000330838	ENST00000358602		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000330838	ENST00000509867		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000330838	ENST00000330838		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000514252	ENST00000358602		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000514252	ENST00000509867		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000514252	ENST00000330838		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			BE934392	ANKRD17	chr4	73957698	+	ANKRD17	chr4	73959835	-
intron-3CDS	ENST00000295598	ENST00000597629		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000295598	ENST00000248673		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3UTR	ENST00000295598	ENST00000594045		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000537345	ENST00000597629		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000537345	ENST00000248673		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3UTR	ENST00000537345	ENST00000594045		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000369496	ENST00000597629		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000369496	ENST00000248673		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3UTR	ENST00000369496	ENST00000594045		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000491156	ENST00000597629		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3CDS	ENST00000491156	ENST00000248673		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-3UTR	ENST00000491156	ENST00000594045		ChiTaRS3.1			BF853292	ATP1A1	chr1	116943397	+	ZFP36	chr19	39898812	+
intron-intron	ENST00000390168	ENST00000388890		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-intron	ENST00000390168	ENST00000323510		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-intron	ENST00000390168	ENST00000483173		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-intron	ENST00000390168	ENST00000467963		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-5UTR	ENST00000390168	ENST00000435709		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-intron	ENST00000390168	ENST00000494422		ChiTaRS3.1			DA572152	H19	chr11	2016829	+	BRD9	chr5	891824	-
intron-3UTR	ENST00000220325	ENST00000220325		ChiTaRS3.1			AA287002	EHD4	chr15	42192171	+	EHD4	chr15	42191800	-
intron-3UTR	ENST00000319622	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000319622	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000319622	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000319622	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000319622	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000319622	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000319622	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000319622	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565184	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000565184	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000565184	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000389093	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000389093	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000389093	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000335181	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000335181	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000335181	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568883	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000568883	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000568883	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000449901	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000449901	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000449901	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000565154	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000565154	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000565154	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000319622		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000565184		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000389093		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000335181		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000568883		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-3UTR	ENST00000568459	ENST00000449901		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000568459	ENST00000565154		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000568459	ENST00000568459		ChiTaRS3.1			CB159102	PKM	chr15	72499215	+	PKM	chr15	72491532	-
intron-intron	ENST00000369927	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000369927	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000346249	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000348257	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000352482	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000358548	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000351424	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000369927		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000346249		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000348257		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000352482		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000358548		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000351424		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
3UTR-intron	ENST00000217121	ENST00000217121		ChiTaRS3.1			DA103662	TPD52L2	chr20	62522402	+	TPD52L2	chr20	62508909	+
intron-intron	ENST00000483366	ENST00000483366		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000483366	ENST00000379458		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000483366	ENST00000319509		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000379458	ENST00000483366		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000379458	ENST00000379458		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000379458	ENST00000319509		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
3UTR-intron	ENST00000319509	ENST00000483366		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
3UTR-intron	ENST00000319509	ENST00000379458		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
3UTR-intron	ENST00000319509	ENST00000319509		ChiTaRS3.1			AW849602	MUC3A	chr7	100610815	-	MUC3A	chr7	100611086	-
intron-intron	ENST00000435085	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000435085	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000307198	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000419228	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000447974	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000289488	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539271	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000423494	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000539587	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000538478	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000324866	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000439209	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000541614	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000536917	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000435085		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000307198		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000419228		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000447974		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000289488		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000539271		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000423494		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000539587		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000538478		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000324866		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000439209		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000541614		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000536917		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000440313	ENST00000440313		ChiTaRS3.1			BE877022	LRTOMT	chr11	71808899	+	LRTOMT	chr11	71808811	-
intron-intron	ENST00000449802	ENST00000377316		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000377321		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000377326		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000312049		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000315422		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000443283		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000394374		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000337652		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000394376		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000449802	ENST00000377313		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-5UTR	ENST00000449802	ENST00000478548		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000377316		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000377321		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000377326		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000312049		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000315422		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000443283		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000394374		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000337652		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000394376		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-intron	ENST00000478884	ENST00000377313		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
intron-5UTR	ENST00000478884	ENST00000478548		ChiTaRS3.1			BC001802	NBEAL1	chr2	204055448	-	MEN1	chr11	64572533	-
Frame-shit	ENST00000392784	ENST00000392784		ChiTaRS3.1			BQ327062	USP30	chr12	109523573	+	USP30	chr12	109523503	-
In-frame	ENST00000392784	ENST00000257548		ChiTaRS3.1			BQ327062	USP30	chr12	109523573	+	USP30	chr12	109523503	-
In-frame	ENST00000257548	ENST00000392784		ChiTaRS3.1			BQ327062	USP30	chr12	109523573	+	USP30	chr12	109523503	-
Frame-shit	ENST00000257548	ENST00000257548		ChiTaRS3.1			BQ327062	USP30	chr12	109523573	+	USP30	chr12	109523503	-
5CDS-3UTR	ENST00000330266	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-intron	ENST00000330266	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-3UTR	ENST00000405975	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-intron	ENST00000405975	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-3UTR	ENST00000415080	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-intron	ENST00000415080	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-3UTR	ENST00000405006	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5CDS-intron	ENST00000405006	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5UTR-3UTR	ENST00000485353	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
5UTR-intron	ENST00000485353	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-3UTR	ENST00000402360	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-intron	ENST00000402360	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-3UTR	ENST00000404790	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-intron	ENST00000404790	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-3UTR	ENST00000403856	ENST00000500779		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-intron	ENST00000403856	ENST00000513221		ChiTaRS3.1			AY149632	THADA	chr2	43655239	-	STARD4-AS1	chr5	111065186	+
intron-intron	ENST00000429315	ENST00000429315		ChiTaRS3.1			BF528292	KIF9-AS1	chr3	47264087	-	KIF9-AS1	chr3	47264860	-
intron-3UTR	ENST00000452135	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000452135		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000393360		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000455781		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000343111		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000347470		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000397072		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000425491		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000539014		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000524170		ChiTaRS3.1			BU676392	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
3UTR-3UTR	ENST00000261313	ENST00000261313		ChiTaRS3.1			BU622182	PEBP1	chr12	118582924	-	PEBP1	chr12	118582623	+
3UTR-3UTR	ENST00000261313	ENST00000542939		ChiTaRS3.1			BU622182	PEBP1	chr12	118582924	-	PEBP1	chr12	118582623	+
intron-3UTR	ENST00000542939	ENST00000261313		ChiTaRS3.1			BU622182	PEBP1	chr12	118582924	-	PEBP1	chr12	118582623	+
intron-3UTR	ENST00000542939	ENST00000542939		ChiTaRS3.1			BU622182	PEBP1	chr12	118582924	-	PEBP1	chr12	118582623	+
In-frame	ENST00000330143	ENST00000262577		ChiTaRS3.1			BI831452	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
Frame-shit	ENST00000521537	ENST00000262577		ChiTaRS3.1			BI831452	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
In-frame	ENST00000520333	ENST00000262577		ChiTaRS3.1			BI831452	ZNF696	chr8	144375236	+	ZC3H3	chr8	144550832	-
intron-3CDS	ENST00000276033	ENST00000276816		ChiTaRS3.1			DA085082	SLC16A2	chrX	73665447	+	ZNF16	chr8	146171427	-
intron-3CDS	ENST00000276033	ENST00000394909		ChiTaRS3.1			DA085082	SLC16A2	chrX	73665447	+	ZNF16	chr8	146171427	-
intron-3CDS	ENST00000587091	ENST00000276816		ChiTaRS3.1			DA085082	SLC16A2	chrX	73665447	+	ZNF16	chr8	146171427	-
intron-3CDS	ENST00000587091	ENST00000394909		ChiTaRS3.1			DA085082	SLC16A2	chrX	73665447	+	ZNF16	chr8	146171427	-
5CDS-intron	ENST00000249373	ENST00000262570		ChiTaRS3.1			BC004142	SMO	chr7	128848619	-	CHCHD3	chr7	132720688	-
5CDS-intron	ENST00000249373	ENST00000448878		ChiTaRS3.1			BC004142	SMO	chr7	128848619	-	CHCHD3	chr7	132720688	-
5CDS-intron	ENST00000249373	ENST00000476546		ChiTaRS3.1			BC004142	SMO	chr7	128848619	-	CHCHD3	chr7	132720688	-
5CDS-intron	ENST00000249373	ENST00000542753		ChiTaRS3.1			BC004142	SMO	chr7	128848619	-	CHCHD3	chr7	132720688	-
intron-intron	ENST00000339976	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000339976	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000004980	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000448372	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000551330	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549518	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000549595	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000339976		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000004980		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000448372		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000551330		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000549518		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000549595		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
intron-intron	ENST00000547886	ENST00000547886		ChiTaRS3.1			BU681052	SENP1	chr12	48488030	+	SENP1	chr12	48482479	+
3UTR-3CDS	ENST00000269919	ENST00000597960		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000610101		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000596558		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000222308		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000608443		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000453489		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000597960		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000610101		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000596558		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000222308		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000608443		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000453489		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000597960		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000610101		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000596558		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000222308		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000608443		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000453489		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000597960		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000610101		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000596558		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000222308		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000608443		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000453489		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000597960		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000610101		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000596558		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000222308		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000608443		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000453489		ChiTaRS3.1			AK026952	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000421182	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000421182	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000357867	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000357867	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000323926	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000323926	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000336916	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000336916	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000354785	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000354785	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000357009	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000357009	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000346544	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000346544	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000345488	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000345488	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000359671	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000359671	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000446046	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000446046	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000443816	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000443816	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000432072	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000432072	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000356005	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000356005	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000490833	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000490833	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-3CDS	ENST00000426059	ENST00000374213		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000426059	ENST00000492808		ChiTaRS3.1			BP392752	FN1	chr2	216232620	+	CD52	chr1	26646683	+
intron-intron	ENST00000415766	ENST00000392945		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000415766	ENST00000440944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000415766	ENST00000429455		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000415766	ENST00000392944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000561639	ENST00000392945		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000561639	ENST00000440944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000561639	ENST00000429455		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000561639	ENST00000392944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000388833	ENST00000392945		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000388833	ENST00000440944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000388833	ENST00000429455		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000388833	ENST00000392944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000562321	ENST00000392945		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000562321	ENST00000440944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000562321	ENST00000429455		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000562321	ENST00000392944		ChiTaRS3.1			AI286092	TSNAXIP1	chr16	67861517	-	GPSM1	chr9	139249154	-
intron-intron	ENST00000525037	ENST00000525037		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000525037	ENST00000530173		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000525037	ENST00000322157		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000525037	ENST00000544660		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000530173	ENST00000525037		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000530173	ENST00000530173		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000530173	ENST00000322157		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000530173	ENST00000544660		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000322157	ENST00000525037		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000322157	ENST00000530173		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000322157	ENST00000322157		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000322157	ENST00000544660		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000544660	ENST00000525037		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000544660	ENST00000530173		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000544660	ENST00000322157		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-intron	ENST00000544660	ENST00000544660		ChiTaRS3.1			CB851452	NPEPPS	chr17	45679343	+	NPEPPS	chr17	45673738	+
intron-3CDS	ENST00000339570	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000339570	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000339570	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000339570	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000339570	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000415380	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000415380	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000415380	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000415380	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000415380	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000261693	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000261693	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000261693	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000261693	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000261693	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000376788	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000376788	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000376788	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000376788	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000376788	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000546215	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000546215	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000546215	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000546215	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000546215	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000535005	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000535005	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000535005	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000535005	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000535005	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000541205	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000541205	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000541205	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000541205	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000541205	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000540495	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000540495	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000540495	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000540495	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000540495	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000544327	ENST00000536769		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000544327	ENST00000538617		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000544327	ENST00000546120		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3CDS	ENST00000544327	ENST00000339647		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-intron	ENST00000544327	ENST00000536661		ChiTaRS3.1			CB115292	SCARB1	chr12	125262716	-	UBC	chr12	125396318	-
intron-3UTR	ENST00000532414	ENST00000532414		ChiTaRS3.1			BM971922	MEX3A	chr1	156044263	+	MEX3A	chr1	156043410	+
intron-intron	ENST00000532414	ENST00000442784		ChiTaRS3.1			BM971922	MEX3A	chr1	156044263	+	MEX3A	chr1	156043410	+
intron-3UTR	ENST00000442784	ENST00000532414		ChiTaRS3.1			BM971922	MEX3A	chr1	156044263	+	MEX3A	chr1	156043410	+
intron-intron	ENST00000442784	ENST00000442784		ChiTaRS3.1			BM971922	MEX3A	chr1	156044263	+	MEX3A	chr1	156043410	+
3UTR-3UTR	ENST00000304636	ENST00000366787		ChiTaRS3.1			C16582	COL3A1	chr2	189876645	-	THBS2	chr6	169615997	-
3UTR-intron	ENST00000304636	ENST00000488355		ChiTaRS3.1			C16582	COL3A1	chr2	189876645	-	THBS2	chr6	169615997	-
3UTR-3UTR	ENST00000317840	ENST00000366787		ChiTaRS3.1			C16582	COL3A1	chr2	189876645	-	THBS2	chr6	169615997	-
3UTR-intron	ENST00000317840	ENST00000488355		ChiTaRS3.1			C16582	COL3A1	chr2	189876645	-	THBS2	chr6	169615997	-
intron-intron	ENST00000393432	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000393432	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000393432	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000393432	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000393432	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000393432	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000442819	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000356731	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000329433	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000510411	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000511300	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000193403		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000394419		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000438964		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000376839		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000538545		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
intron-intron	ENST00000524180	ENST00000554508		ChiTaRS3.1			CO249202	HNRNPH1	chr5	179049671	-	ACTN1	chr14	69363779	-
5CDS-intron	ENST00000261168	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000261168	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000543189	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000536444	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000544627	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
3UTR-intron	ENST00000541654	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000519374		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000519911		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000265093		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
5CDS-intron	ENST00000540793	ENST00000517669		ChiTaRS3.1			BE077232	ATF7IP	chr12	14577454	-	ATP6V0E1	chr5	172449335	-
intron-3UTR	ENST00000405837	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000405837	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000405837	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000405837	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000405837	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000405837	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000405837	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000405837	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000433053	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000433053	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000433053	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000433053	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000433053	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000433053	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000433053	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000433053	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000278893	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000278893	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000278893	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000278893	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000278893	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000278893	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000278893	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000278893	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000360796	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000360796	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000360796	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000360796	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000360796	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000360796	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000360796	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000360796	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000403550	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000403550	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000403550	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000403550	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000403550	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000403550	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000403550	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000403550	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000407022	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000407022	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000407022	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000407022	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000407022	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000407022	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000407022	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000407022	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000421906	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000421906	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000421906	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000421906	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000421906	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000421906	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000421906	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000421906	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000537604	ENST00000278175		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000537604	ENST00000534464		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000537604	ENST00000530439		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000537604	ENST00000524948		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-3UTR	ENST00000537604	ENST00000528655		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000537604	ENST00000526492		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000537604	ENST00000525063		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
intron-intron	ENST00000537604	ENST00000528544		ChiTaRS3.1			CB242152	BSCL2	chr11	62457821	+	ADM	chr11	10328800	+
Frame-shit	ENST00000377107	ENST00000377107		ChiTaRS3.1			AW955052	USP11	chrX	47107298	-	USP11	chrX	47104451	+
Frame-shit	ENST00000377107	ENST00000218348		ChiTaRS3.1			AW955052	USP11	chrX	47107298	-	USP11	chrX	47104451	+
In-frame	ENST00000218348	ENST00000377107		ChiTaRS3.1			AW955052	USP11	chrX	47107298	-	USP11	chrX	47104451	+
In-frame	ENST00000218348	ENST00000218348		ChiTaRS3.1			AW955052	USP11	chrX	47107298	-	USP11	chrX	47104451	+
intron-intron	ENST00000526986	ENST00000442725		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000526986	ENST00000252595		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000526986	ENST00000598424		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000526986	ENST00000598848		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000310442	ENST00000442725		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000310442	ENST00000252595		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000310442	ENST00000598424		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000310442	ENST00000598848		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000525925	ENST00000442725		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000525925	ENST00000252595		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-3UTR	ENST00000525925	ENST00000598424		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000525925	ENST00000598848		ChiTaRS3.1			BI009992	ZDHHC24	chr11	66310112	-	SLC27A1	chr19	17615616	+
intron-intron	ENST00000403058	ENST00000331113		ChiTaRS3.1			BF352842	POU6F2	chr7	39378926	+	KCND2	chr7	120268918	-
intron-intron	ENST00000518318	ENST00000331113		ChiTaRS3.1			BF352842	POU6F2	chr7	39378926	+	KCND2	chr7	120268918	-
intron-intron	ENST00000517348	ENST00000331113		ChiTaRS3.1			BF352842	POU6F2	chr7	39378926	+	KCND2	chr7	120268918	-
intron-intron	ENST00000559001	ENST00000331113		ChiTaRS3.1			BF352842	POU6F2	chr7	39378926	+	KCND2	chr7	120268918	-
intron-intron	ENST00000464276	ENST00000331113		ChiTaRS3.1			BF352842	POU6F2	chr7	39378926	+	KCND2	chr7	120268918	-
intron-intron	ENST00000589876	ENST00000356554		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000589876	ENST00000482811		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000245925	ENST00000356554		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000245925	ENST00000482811		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000536630	ENST00000356554		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000536630	ENST00000482811		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000587152	ENST00000356554		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000587152	ENST00000482811		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000586902	ENST00000356554		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000586902	ENST00000482811		ChiTaRS3.1			BG000012	EML2	chr19	46128976	-	MAN1A2	chr1	117986828	+
intron-intron	ENST00000300896	ENST00000300896		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000300896	ENST00000592339		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000300896	ENST00000393003		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000300896	ENST00000586881		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000592339	ENST00000300896		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000592339	ENST00000592339		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000592339	ENST00000393003		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000592339	ENST00000586881		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000393003	ENST00000300896		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000393003	ENST00000592339		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000393003	ENST00000393003		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000393003	ENST00000586881		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000586881	ENST00000300896		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000586881	ENST00000592339		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000586881	ENST00000393003		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
intron-intron	ENST00000586881	ENST00000586881		ChiTaRS3.1			AA557922	USP32	chr17	58371548	-	USP32	chr17	58371661	+
3UTR-3UTR	ENST00000216044	ENST00000216044		ChiTaRS3.1			AA216382	GTPBP1	chr22	39127436	-	GTPBP1	chr22	39127494	+
3UTR-intron	ENST00000216044	ENST00000460605		ChiTaRS3.1			AA216382	GTPBP1	chr22	39127436	-	GTPBP1	chr22	39127494	+
intron-3UTR	ENST00000460605	ENST00000216044		ChiTaRS3.1			AA216382	GTPBP1	chr22	39127436	-	GTPBP1	chr22	39127494	+
intron-intron	ENST00000460605	ENST00000460605		ChiTaRS3.1			AA216382	GTPBP1	chr22	39127436	-	GTPBP1	chr22	39127494	+
intron-intron	ENST00000261844	ENST00000300213		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000261844	ENST00000356633		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000562351	ENST00000300213		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000562351	ENST00000356633		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000546305	ENST00000300213		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000546305	ENST00000356633		ChiTaRS3.1			DA365902	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-3UTR	ENST00000392365	ENST00000324856		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000392365	ENST00000457599		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000392365	ENST00000374152		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000392365	ENST00000540690		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-3UTR	ENST00000233156	ENST00000324856		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000233156	ENST00000457599		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000233156	ENST00000374152		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000233156	ENST00000540690		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-3UTR	ENST00000409676	ENST00000324856		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000409676	ENST00000457599		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000409676	ENST00000374152		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000409676	ENST00000540690		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-3UTR	ENST00000339091	ENST00000324856		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000339091	ENST00000457599		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000339091	ENST00000374152		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000339091	ENST00000540690		ChiTaRS3.1			BQ187382	TFPI	chr2	188369030	-	ARID1A	chr1	27108477	+
intron-intron	ENST00000369799	ENST00000257575		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000369799	ENST00000392549		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000369799	ENST00000407967		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000369799	ENST00000319176		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000369799	ENST00000551251		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000475081	ENST00000257575		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000475081	ENST00000392549		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000475081	ENST00000407967		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000475081	ENST00000319176		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000475081	ENST00000551251		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000359172	ENST00000257575		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000359172	ENST00000392549		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000359172	ENST00000407967		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000359172	ENST00000319176		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000359172	ENST00000551251		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000393614	ENST00000257575		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000393614	ENST00000392549		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000393614	ENST00000407967		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000393614	ENST00000319176		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-intron	ENST00000393614	ENST00000551251		ChiTaRS3.1			AA207072	AHCYL1	chr1	110535028	-	RNFT2	chr12	117217288	-
intron-3CDS	ENST00000371191	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371191	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371191	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000407417	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000407417	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000407417	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000479364	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000479364	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000479364	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371189	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371189	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371189	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000403491	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000403491	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000403491	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000371187	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000371187	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000371187	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000485903	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000485903	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000485903	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371185	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371185	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371185	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371184	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3CDS	ENST00000371184	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-intron	ENST00000371184	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000357977	ENST00000371191		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-3CDS	ENST00000357977	ENST00000407417		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000479364		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000371189		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000403491		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000371187		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000485903		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000371185		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000371184		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
3UTR-intron	ENST00000357977	ENST00000357977		ChiTaRS3.1			BE765492	NFIA	chr1	61921759	+	NFIA	chr1	61892144	+
intron-3UTR	ENST00000373314	ENST00000373314		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-3UTR	ENST00000373314	ENST00000373312		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-intron	ENST00000373314	ENST00000468379		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-3UTR	ENST00000373312	ENST00000373314		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-3UTR	ENST00000373312	ENST00000373312		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-intron	ENST00000373312	ENST00000468379		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-3UTR	ENST00000468379	ENST00000373314		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-3UTR	ENST00000468379	ENST00000373312		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-intron	ENST00000468379	ENST00000468379		ChiTaRS3.1			BU507222	FAM129B	chr9	130267913	-	FAM129B	chr9	130268531	-
intron-intron	ENST00000419152	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000419152	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532400	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000532741	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000317198	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000526838	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000442189	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000528610	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000423316	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000395119	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000529272	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531621	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000524624	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000419152		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000532400		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000532741		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000317198		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000526838		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000442189		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000528610		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000423316		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000395119		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000529272		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000531621		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000524624		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
intron-intron	ENST00000531770	ENST00000531770		ChiTaRS3.1			BF513932	EEF1D	chr8	144679549	+	EEF1D	chr8	144672080	-
5CDS-5UTR	ENST00000336078	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000336078	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000336078	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000336078	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000336078	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-intron	ENST00000336078	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591083	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591083	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591083	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591083	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591083	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-intron	ENST00000591083	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000589288	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000589288	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000589288	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000589288	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000589288	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-intron	ENST00000589288	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591230	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591230	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591230	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591230	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591230	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-intron	ENST00000591230	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591808	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591808	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591808	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591808	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-5UTR	ENST00000591808	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
5CDS-intron	ENST00000591808	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-5UTR	ENST00000588956	ENST00000336078		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-5UTR	ENST00000588956	ENST00000591083		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-5UTR	ENST00000588956	ENST00000589288		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-5UTR	ENST00000588956	ENST00000591230		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-5UTR	ENST00000588956	ENST00000591808		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-intron	ENST00000588956	ENST00000588956		ChiTaRS3.1			CD695642	ZNF532	chr18	56587865	+	ZNF532	chr18	56585503	+
intron-3UTR	ENST00000579433	ENST00000390237		ChiTaRS3.1			BP223142	MIR3134	chr9	114802799	-	IGKC	chr2	89156793	-
intron-3UTR	ENST00000292641	ENST00000487305		ChiTaRS3.1			BQ067622	SCGB3A1	chr5	180017095	-	TMEM39B	chr1	32542765	+
intron-3UTR	ENST00000292641	ENST00000336294		ChiTaRS3.1			BQ067622	SCGB3A1	chr5	180017095	-	TMEM39B	chr1	32542765	+
intron-intron	ENST00000292641	ENST00000456834		ChiTaRS3.1			BQ067622	SCGB3A1	chr5	180017095	-	TMEM39B	chr1	32542765	+
intron-intron	ENST00000292641	ENST00000373634		ChiTaRS3.1			BQ067622	SCGB3A1	chr5	180017095	-	TMEM39B	chr1	32542765	+
intron-intron	ENST00000292641	ENST00000427288		ChiTaRS3.1			BQ067622	SCGB3A1	chr5	180017095	-	TMEM39B	chr1	32542765	+
intron-intron	ENST00000523677	ENST00000356218		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000523677	ENST00000557103		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000523677	ENST00000395718		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000523677	ENST00000344768		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000523677	ENST00000554167		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000523677	ENST00000553556		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000356218		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000557103		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000395718		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000344768		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000554167		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000423420	ENST00000553556		ChiTaRS3.1			BG987662	C1orf210	chr1	43750953	-	FRMD6	chr14	52062973	+
intron-intron	ENST00000375592	ENST00000375592		ChiTaRS3.1			BF932862	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-5UTR	ENST00000375592	ENST00000478089		ChiTaRS3.1			BF932862	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-intron	ENST00000478089	ENST00000375592		ChiTaRS3.1			BF932862	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-5UTR	ENST00000478089	ENST00000478089		ChiTaRS3.1			BF932862	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
5CDS-3UTR	ENST00000373585	ENST00000469172		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000265866		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000441000		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000354695		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000469172		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000265866		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000441000		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000354695		ChiTaRS3.1			AX748272	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
3UTR-3CDS	ENST00000287777	ENST00000409500		ChiTaRS3.1			AI193162	KLHL40	chr3	42733642	-	GSTK1	chr7	142965263	-
3UTR-3CDS	ENST00000287777	ENST00000443571		ChiTaRS3.1			AI193162	KLHL40	chr3	42733642	-	GSTK1	chr7	142965263	-
3UTR-3CDS	ENST00000287777	ENST00000358406		ChiTaRS3.1			AI193162	KLHL40	chr3	42733642	-	GSTK1	chr7	142965263	-
3UTR-3CDS	ENST00000287777	ENST00000479303		ChiTaRS3.1			AI193162	KLHL40	chr3	42733642	-	GSTK1	chr7	142965263	-
3UTR-intron	ENST00000287777	ENST00000494735		ChiTaRS3.1			AI193162	KLHL40	chr3	42733642	-	GSTK1	chr7	142965263	-
intron-intron	ENST00000563580	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000563580		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000564910		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000261890		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000565075		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000435304		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000569896		ChiTaRS3.1			BU608612	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000301180	ENST00000301180		ChiTaRS3.1			CV336522	DIP2B	chr12	50928407	-	DIP2B	chr12	50924171	+
intron-3CDS	ENST00000248244	ENST00000248244		ChiTaRS3.1			CR975712	TICAM1	chr19	4818222	+	TICAM1	chr19	4818064	-
intron-5UTR	ENST00000227524	ENST00000227524		ChiTaRS3.1			BU621822	PRPF19	chr11	60658543	+	PRPF19	chr11	60673894	-
intron-3CDS	ENST00000458244	ENST00000458244		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000458244	ENST00000293774		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000458244	ENST00000551956		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000293774	ENST00000458244		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000293774	ENST00000293774		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000293774	ENST00000551956		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000551956	ENST00000458244		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000551956	ENST00000293774		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
intron-3CDS	ENST00000551956	ENST00000551956		ChiTaRS3.1			AW265272	KRT4	chr12	53200470	+	KRT4	chr12	53200973	-
In-frame	ENST00000399448	ENST00000399448		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000399448	ENST00000447931		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000399448	ENST00000318974		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000399448	ENST00000456013		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
5CDS-intron	ENST00000399448	ENST00000539029		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000447931	ENST00000399448		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000447931	ENST00000447931		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000447931	ENST00000318974		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000447931	ENST00000456013		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
5CDS-intron	ENST00000447931	ENST00000539029		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000318974	ENST00000399448		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000318974	ENST00000447931		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000318974	ENST00000318974		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000318974	ENST00000456013		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
5CDS-intron	ENST00000318974	ENST00000539029		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000456013	ENST00000399448		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000456013	ENST00000447931		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000456013	ENST00000318974		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
In-frame	ENST00000456013	ENST00000456013		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
5CDS-intron	ENST00000456013	ENST00000539029		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-3CDS	ENST00000539029	ENST00000399448		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-3CDS	ENST00000539029	ENST00000447931		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-3CDS	ENST00000539029	ENST00000318974		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-3CDS	ENST00000539029	ENST00000456013		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-intron	ENST00000539029	ENST00000539029		ChiTaRS3.1			BF762332	PTPN6	chr12	7065630	+	PTPN6	chr12	7064352	+
intron-intron	ENST00000388890	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000264057		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000409813		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000489613		ChiTaRS3.1			BE245442	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
3UTR-3CDS	ENST00000328504	ENST00000282096		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
3UTR-3CDS	ENST00000328504	ENST00000455098		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
3UTR-3UTR	ENST00000328504	ENST00000534317		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3CDS	ENST00000558553	ENST00000282096		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3CDS	ENST00000558553	ENST00000455098		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-3UTR	ENST00000558553	ENST00000534317		ChiTaRS3.1			AI651372	SPATA8	chr15	97328609	-	PDE3B	chr11	14793516	-
intron-intron	ENST00000405409	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000405409	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000414461	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000414461	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000449924	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000449924	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000262829	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000262829	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000397303	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000397303	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000359369	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000359369	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000416721	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000416721	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000438146	ENST00000263168		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000438146	ENST00000476936		ChiTaRS3.1			BF763422	RBFOX2	chr22	36155923	+	CAPZA1	chr1	113204525	+
intron-intron	ENST00000357066	ENST00000357066		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000357066	ENST00000592143		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000357066	ENST00000592280		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592143	ENST00000357066		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592143	ENST00000592143		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592143	ENST00000592280		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592280	ENST00000357066		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592280	ENST00000592143		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000592280	ENST00000592280		ChiTaRS3.1			CK906242	MOB3A	chr19	2083180	-	MOB3A	chr19	2085628	-
intron-intron	ENST00000397063	ENST00000397063		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397063	ENST00000397062		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397063	ENST00000446151		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397063	ENST00000464747		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397062	ENST00000397063		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397062	ENST00000397062		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397062	ENST00000446151		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397062	ENST00000464747		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000446151	ENST00000397063		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000446151	ENST00000397062		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000446151	ENST00000446151		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000446151	ENST00000464747		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000464747	ENST00000397063		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000464747	ENST00000397062		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000464747	ENST00000446151		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000464747	ENST00000464747		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000423513	ENST00000397063		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000423513	ENST00000397062		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000423513	ENST00000446151		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000423513	ENST00000464747		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			AA508553	NFE2L2	chr2	178118959	-	NFE2L2	chr2	178119063	+
intron-3CDS	ENST00000455895	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000455895	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000413080	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000413080	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000341071	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000341071	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000526031	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000526031	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000419121	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000419121	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000446293	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000446293	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000463967	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000463967	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-3CDS	ENST00000449308	ENST00000319380		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
intron-intron	ENST00000449308	ENST00000587581		ChiTaRS3.1			AA367973	BSDC1	chr1	32831090	-	UBE2O	chr17	74392392	+
3UTR-3UTR	ENST00000316059	ENST00000316059		ChiTaRS3.1			AA278303	ZFP91	chr11	58387661	-	ZFP91	chr11	58388142	-
3UTR-intron	ENST00000324306	ENST00000356175		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
3UTR-intron	ENST00000324306	ENST00000358273		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
3UTR-intron	ENST00000324306	ENST00000431387		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
3UTR-intron	ENST00000324306	ENST00000581113		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
3UTR-intron	ENST00000324306	ENST00000417592		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
3UTR-intron	ENST00000324306	ENST00000444181		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000356175		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000358273		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000431387		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000581113		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000417592		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000426572	ENST00000444181		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000356175		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000358273		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000431387		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000581113		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000417592		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000535170	ENST00000444181		ChiTaRS3.1			AA452203	ZKSCAN1	chr7	99635350	+	NF1	chr17	29471133	+
intron-intron	ENST00000356079	ENST00000356079		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000356079	ENST00000461371		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000356079	ENST00000429815		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000461371	ENST00000356079		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000461371	ENST00000461371		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000461371	ENST00000429815		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000429815	ENST00000356079		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000429815	ENST00000461371		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
intron-intron	ENST00000429815	ENST00000429815		ChiTaRS3.1			AA569553	CYP20A1	chr2	204165021	+	CYP20A1	chr2	204164946	-
3UTR-3UTR	ENST00000264645	ENST00000264645		ChiTaRS3.1			AA190703	CASC3	chr17	38327833	-	CASC3	chr17	38327907	+
intron-intron	ENST00000477999	ENST00000265239		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000455191		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000453254		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000477999	ENST00000480302		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000265239		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000455191		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000453254		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
intron-intron	ENST00000244576	ENST00000480302		ChiTaRS3.1			AK092633	ZNF391	chr6	27358698	+	IQCG	chr3	197680924	+
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000449187		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000479257		ChiTaRS3.1			AA524793	CALU	chr7	128409485	+	CALU	chr7	128409552	-
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006743	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000373996	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000373996	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000313400	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361209	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000361477	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000288520	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000341734	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000373996		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000313400		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000361209		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000361477		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000288520		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000341734		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
intron-intron	ENST00000358637	ENST00000358637		ChiTaRS3.1			AA493853	ASTN2	chr9	119520576	+	ASTN2	chr9	119520747	-
5CDS-intron	ENST00000395309	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395309	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395309	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000413890	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000413890	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000413890	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000438792	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000438792	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000438792	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395314	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395314	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395314	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395308	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395308	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395308	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395311	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000395311	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000395311	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000416613	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000416613	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000416613	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000554507	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000554507	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000554507	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000555573	ENST00000395309		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000413890		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000438792		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000395314		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-intron	ENST00000555573	ENST00000395308		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000395311		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000416613		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000554507		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
5CDS-3UTR	ENST00000555573	ENST00000555573		ChiTaRS3.1			AA526623	KTN1	chr14	56146306	+	KTN1	chr14	56150864	-
3UTR-3UTR	ENST00000319441	ENST00000319441		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000543666		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000535860		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000543666	ENST00000319441		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000543666		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000535860		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000535860	ENST00000319441		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000543666		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000535860		ChiTaRS3.1			AA484533	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000216271	ENST00000598441		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000216271	ENST00000221448		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000448072	ENST00000598441		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000448072	ENST00000221448		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000498366	ENST00000598441		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000498366	ENST00000221448		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000349505	ENST00000598441		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
intron-intron	ENST00000349505	ENST00000221448		ChiTaRS3.1			AA425383	HDAC10	chr22	50684407	+	SNRNP70	chr19	49610611	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AA569443	MALAT1	chr11	65267608	-	MALAT1	chr11	65267785	+
intron-3UTR	ENST00000367334	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367334	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000367334	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367334	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367334	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000367334	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367333	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367333	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000367333	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367333	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367333	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000367333	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000472411	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000472411	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000472411	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000472411	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000472411	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000472411	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367330	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367330	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000367330	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367330	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367330	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000367330	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367332	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367332	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000367332	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367332	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000367332	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000367332	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000485839	ENST00000367334		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000485839	ENST00000367333		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-5UTR	ENST00000485839	ENST00000472411		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000485839	ENST00000367330		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-3UTR	ENST00000485839	ENST00000367332		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000485839	ENST00000485839		ChiTaRS3.1			AA642063	TMEM9	chr1	201104218	-	TMEM9	chr1	201104459	+
intron-intron	ENST00000393232	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393232	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000353868	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000539636	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000311967	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000223190	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393230	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000393231	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000393232		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000353868		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000539636		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000311967		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000223190		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000393230		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000393231		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
intron-intron	ENST00000477428	ENST00000477428		ChiTaRS3.1			AA503463	NRF1	chr7	129377095	+	NRF1	chr7	129377114	-
3UTR-intron	ENST00000434316	ENST00000455502		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000434316	ENST00000248572		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000434316	ENST00000429473		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000434316	ENST00000430875		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000434316	ENST00000428834		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000375391	ENST00000455502		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000375391	ENST00000248572		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000375391	ENST00000429473		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000375391	ENST00000430875		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-intron	ENST00000375391	ENST00000428834		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
intron-intron	ENST00000474393	ENST00000455502		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
intron-intron	ENST00000474393	ENST00000248572		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
intron-intron	ENST00000474393	ENST00000429473		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
intron-intron	ENST00000474393	ENST00000430875		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
intron-intron	ENST00000474393	ENST00000428834		ChiTaRS3.1			AA303013	TMCO3	chr13	114204317	-	GNGT1	chr7	93516068	+
3UTR-3UTR	ENST00000262803	ENST00000262803		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
3UTR-3UTR	ENST00000262803	ENST00000599848		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
3UTR-intron	ENST00000262803	ENST00000600310		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
3UTR-3UTR	ENST00000599848	ENST00000262803		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
3UTR-3UTR	ENST00000599848	ENST00000599848		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
3UTR-intron	ENST00000599848	ENST00000600310		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
intron-3UTR	ENST00000600310	ENST00000262803		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
intron-3UTR	ENST00000600310	ENST00000599848		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
intron-intron	ENST00000600310	ENST00000600310		ChiTaRS3.1			AA532713	UPF1	chr19	18979030	+	UPF1	chr19	18978977	-
intron-5UTR	ENST00000395386	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395386	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395386	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395386	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395386	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395386	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000337920	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000337920	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000337920	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000337920	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000337920	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000337920	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395376	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395376	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395376	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395376	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395376	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395376	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000220847	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000220847	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000220847	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000220847	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000220847	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000220847	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395390	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395390	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395390	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395390	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395390	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395390	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395379	ENST00000321524		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395379	ENST00000543041		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395379	ENST00000228843		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-5UTR	ENST00000395379	ENST00000352618		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395379	ENST00000544927		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
intron-intron	ENST00000395379	ENST00000544931		ChiTaRS3.1			AA263143	PHF20L1	chr8	133845122	-	RAD51AP1	chr12	4648072	+
In-frame	ENST00000351288	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000351288	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000351288	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000453750	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000453750	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000453750	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000409031	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000409031	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000409031	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000431183	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000431183	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000431183	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000443958	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000443958	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000443958	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-3CDS	ENST00000339679	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-5UTR	ENST00000339679	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-5UTR	ENST00000339679	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000452225	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000452225	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000452225	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000426662	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000426662	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000426662	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000473720	ENST00000233114		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000409908		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000409476		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000539945		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000473720	ENST00000544381		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000473720	ENST00000394423		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000462944		ChiTaRS3.1			AA315813	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
3UTR-5UTR	ENST00000300952	ENST00000305366		ChiTaRS3.1			AA155623	MIDN	chr19	1258917	-	TM4SF1	chr3	149095421	-
3UTR-intron	ENST00000300952	ENST00000472441		ChiTaRS3.1			AA155623	MIDN	chr19	1258917	-	TM4SF1	chr3	149095421	-
3UTR-5UTR	ENST00000591446	ENST00000305366		ChiTaRS3.1			AA155623	MIDN	chr19	1258917	-	TM4SF1	chr3	149095421	-
3UTR-intron	ENST00000591446	ENST00000472441		ChiTaRS3.1			AA155623	MIDN	chr19	1258917	-	TM4SF1	chr3	149095421	-
intron-intron	ENST00000366935	ENST00000366935		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366935	ENST00000489246		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366935	ENST00000366934		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000366935		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000489246		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000366934		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000366935		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000489246		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000366934		ChiTaRS3.1			AA535213	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
3UTR-3UTR	ENST00000228506	ENST00000228506		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
3UTR-intron	ENST00000228506	ENST00000412616		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
3UTR-intron	ENST00000228506	ENST00000535413		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-3UTR	ENST00000412616	ENST00000228506		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-intron	ENST00000412616	ENST00000412616		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-intron	ENST00000412616	ENST00000535413		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-3UTR	ENST00000535413	ENST00000228506		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-intron	ENST00000535413	ENST00000412616		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-intron	ENST00000535413	ENST00000535413		ChiTaRS3.1			AA244053	MLEC	chr12	121139364	+	MLEC	chr12	121139529	-
intron-3UTR	ENST00000396821	ENST00000396821		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000396821	ENST00000444597		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000396821	ENST00000381633		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-intron	ENST00000396821	ENST00000432525		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000444597	ENST00000396821		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000444597	ENST00000444597		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000444597	ENST00000381633		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-intron	ENST00000444597	ENST00000432525		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000381633	ENST00000396821		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000381633	ENST00000444597		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000381633	ENST00000381633		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-intron	ENST00000381633	ENST00000432525		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000432525	ENST00000396821		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000432525	ENST00000444597		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000432525	ENST00000381633		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-intron	ENST00000432525	ENST00000432525		ChiTaRS3.1			AA603833	DDX17	chr22	38879563	-	DDX17	chr22	38879667	+
intron-3UTR	ENST00000458659	ENST00000458659		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000458659	ENST00000501704		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000458659	ENST00000261489		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000458659	ENST00000460842		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000501704	ENST00000458659		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000501704	ENST00000501704		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000501704	ENST00000261489		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000501704	ENST00000460842		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000261489	ENST00000458659		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000261489	ENST00000501704		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000261489	ENST00000261489		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000261489	ENST00000460842		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000460842	ENST00000458659		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3UTR	ENST00000460842	ENST00000501704		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000460842	ENST00000261489		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-intron	ENST00000460842	ENST00000460842		ChiTaRS3.1			AA532503	TSC22D1	chr13	45007748	-	TSC22D1	chr13	45007668	+
intron-3CDS	ENST00000518347	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518347	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518347	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000424248	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000424248	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000424248	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000262585	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000262585	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000262585	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000519811	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000519811	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000519811	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000518806	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518806	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000518806	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000523308	ENST00000302125		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000523308	ENST00000412103		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-intron	ENST00000523308	ENST00000457570		ChiTaRS3.1			AW947243	DENND3	chr8	142168383	-	MZB1	chr5	138724278	-
intron-3CDS	ENST00000423245	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000423245	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000423245	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000423245	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000423245	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000423245	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000317905	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000317905	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000317905	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000317905	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000317905	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000317905	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000420326	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000420326	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000420326	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000420326	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000420326	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000420326	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000340830	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000340830	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000340830	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000340830	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000340830	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000340830	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000584999	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000584999	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000584999	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000584999	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000584999	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000584999	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000443199	ENST00000423245		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3CDS	ENST00000443199	ENST00000317905		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000443199	ENST00000420326		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000443199	ENST00000340830		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-intron	ENST00000443199	ENST00000584999		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-5UTR	ENST00000443199	ENST00000443199		ChiTaRS3.1			AA577933	RECQL5	chr17	73623422	-	RECQL5	chr17	73623526	+
intron-3UTR	ENST00000354883	ENST00000261745		ChiTaRS3.1			AA319253	SLC25A26	chr3	66418922	+	NAA25	chr12	112465541	-
intron-3UTR	ENST00000336733	ENST00000261745		ChiTaRS3.1			AA319253	SLC25A26	chr3	66418922	+	NAA25	chr12	112465541	-
intron-3UTR	ENST00000536651	ENST00000261745		ChiTaRS3.1			AA319253	SLC25A26	chr3	66418922	+	NAA25	chr12	112465541	-
intron-3UTR	ENST00000413054	ENST00000261745		ChiTaRS3.1			AA319253	SLC25A26	chr3	66418922	+	NAA25	chr12	112465541	-
intron-3UTR	ENST00000484768	ENST00000261745		ChiTaRS3.1			AA319253	SLC25A26	chr3	66418922	+	NAA25	chr12	112465541	-
intron-intron	ENST00000395715	ENST00000395715		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000395715	ENST00000220888		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000395715	ENST00000519076		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000395715	ENST00000520276		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000395715	ENST00000519674		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000220888	ENST00000395715		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000220888	ENST00000220888		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000220888	ENST00000519076		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000220888	ENST00000520276		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000220888	ENST00000519674		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519076	ENST00000395715		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519076	ENST00000220888		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519076	ENST00000519076		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519076	ENST00000520276		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519076	ENST00000519674		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000520276	ENST00000395715		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000520276	ENST00000220888		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000520276	ENST00000519076		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000520276	ENST00000520276		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000520276	ENST00000519674		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519674	ENST00000395715		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519674	ENST00000220888		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519674	ENST00000519076		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519674	ENST00000520276		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
intron-intron	ENST00000519674	ENST00000519674		ChiTaRS3.1			AA543013	TRPS1	chr8	116536960	-	TRPS1	chr8	116537027	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			BE939413	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3CDS	ENST00000322147	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000322147	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000322147	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000322147	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000322147	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000322147	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000301873	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000301873	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000301873	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000301873	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000301873	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000301873	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000530785	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000530785	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000530785	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000530785	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000530785	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000530785	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000529189	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000529189	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000529189	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000529189	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000529189	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000529189	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000532932	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000532932	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000532932	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000532932	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000532932	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000532932	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000536982	ENST00000322147		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-3CDS	ENST00000536982	ENST00000301873		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000536982	ENST00000530785		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000536982	ENST00000529189		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000536982	ENST00000532932		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000536982	ENST00000536982		ChiTaRS3.1			AA368933	LTBP3	chr11	65310587	-	LTBP3	chr11	65318898	+
intron-intron	ENST00000418331	ENST00000418331		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000418331	ENST00000440289		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000418331	ENST00000526550		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000418331		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000440289		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000440289	ENST00000526550		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000418331		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000440289		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-intron	ENST00000526550	ENST00000526550		ChiTaRS3.1			BE160413	PTPRJ	chr11	48063456	-	PTPRJ	chr11	48070315	+
intron-3UTR	ENST00000439155	ENST00000448464		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000439155	ENST00000342697		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000439155	ENST00000378776		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000367429	ENST00000448464		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000367429	ENST00000342697		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000367429	ENST00000378776		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000496761	ENST00000448464		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000496761	ENST00000342697		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000496761	ENST00000378776		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000359637	ENST00000448464		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000359637	ENST00000342697		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000359637	ENST00000378776		ChiTaRS3.1			AA312953	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3CDS	ENST00000291270	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000291270	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000291270	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000291270	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000291270	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000291270	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000291270	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000600757	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000600757	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000343373	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000343373	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000447742	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000447742	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000458663	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000458663	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000354227	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000354227	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000291270		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000600757		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000343373		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000447742		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000458663		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000595361	ENST00000354227		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-5UTR	ENST00000595361	ENST00000595361		ChiTaRS3.1			AA065313	DMPK	chr19	46280657	+	DMPK	chr19	46278276	-
intron-3CDS	ENST00000540306	ENST00000540306		ChiTaRS3.1			AA347223	DHX8	chr17	41601461	+	DHX8	chr17	41598748	+
intron-3CDS	ENST00000540306	ENST00000262415		ChiTaRS3.1			AA347223	DHX8	chr17	41601461	+	DHX8	chr17	41598748	+
3UTR-3CDS	ENST00000262415	ENST00000540306		ChiTaRS3.1			AA347223	DHX8	chr17	41601461	+	DHX8	chr17	41598748	+
3UTR-3CDS	ENST00000262415	ENST00000262415		ChiTaRS3.1			AA347223	DHX8	chr17	41601461	+	DHX8	chr17	41598748	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AY288760	AFF1	chr4	87989217	+	KMT2A	chr11	118358015	+
intron-intron	ENST00000296585	ENST00000296585		ChiTaRS3.1			AA587833	ITGA2	chr5	52294905	+	ITGA2	chr5	52294851	-
5CDS-intron	ENST00000427410	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000427410	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000447388	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000425457	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000456393	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372654	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372653	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372652	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000372651	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000440226	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
5CDS-intron	ENST00000308733	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000316586		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000403346		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000401869		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000405883		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000405585		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000543554		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000478403		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-intron	ENST00000483091	ENST00000535007		ChiTaRS3.1			AA085593	NFYC	chr1	41223966	+	STK25	chr2	242439260	+
intron-3CDS	ENST00000355520	ENST00000432648		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000355520	ENST00000446189		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000355520	ENST00000372984		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-3CDS	ENST00000540071	ENST00000432648		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000540071	ENST00000446189		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000540071	ENST00000372984		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-3CDS	ENST00000484842	ENST00000432648		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000484842	ENST00000446189		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-intron	ENST00000484842	ENST00000372984		ChiTaRS3.1			AA160383	OPHN1	chrX	67352991	-	AKIRIN1	chr1	39466658	+
intron-3CDS	ENST00000335154	ENST00000450536		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000335154	ENST00000367663		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000335154	ENST00000409812		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000335154	ENST00000258062		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000335154	ENST00000415951		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000335154	ENST00000531675		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000550488	ENST00000450536		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000550488	ENST00000367663		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550488	ENST00000409812		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550488	ENST00000258062		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550488	ENST00000415951		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550488	ENST00000531675		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000352151	ENST00000450536		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000352151	ENST00000367663		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000352151	ENST00000409812		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000352151	ENST00000258062		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000352151	ENST00000415951		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000352151	ENST00000531675		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000293590	ENST00000450536		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000293590	ENST00000367663		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000293590	ENST00000409812		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000293590	ENST00000258062		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000293590	ENST00000415951		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000293590	ENST00000531675		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000550668	ENST00000450536		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-3CDS	ENST00000550668	ENST00000367663		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550668	ENST00000409812		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550668	ENST00000258062		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550668	ENST00000415951		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
intron-intron	ENST00000550668	ENST00000531675		ChiTaRS3.1			AA557223	FMNL3	chr12	50038786	+	REPS1	chr6	139237068	+
5CDS-5UTR	ENST00000375664	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375664	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375664	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375664	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375664	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-3UTR	ENST00000375664	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375646	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375646	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375646	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375646	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000375646	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-3UTR	ENST00000375646	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000347934	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000347934	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000347934	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000347934	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000347934	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-3UTR	ENST00000347934	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000354911	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000354911	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000354911	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000354911	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000354911	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-3UTR	ENST00000354911	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000428935	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000428935	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000428935	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000428935	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-5UTR	ENST00000428935	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
5CDS-3UTR	ENST00000428935	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-5UTR	ENST00000532233	ENST00000375664		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-5UTR	ENST00000532233	ENST00000375646		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-5UTR	ENST00000532233	ENST00000347934		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-5UTR	ENST00000532233	ENST00000354911		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-5UTR	ENST00000532233	ENST00000428935		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-3UTR	ENST00000532233	ENST00000532233		ChiTaRS3.1			AA343573	WAC	chr10	28879726	+	WAC	chr10	28824527	+
intron-intron	ENST00000478136	ENST00000389794		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000389793		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000536965		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000473037		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000389794		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000389793		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000536965		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000473037		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000389794		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000389793		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000536965		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000473037		ChiTaRS3.1			AA412313	FAM19A1	chr3	68550279	+	LYST	chr1	235992241	-
intron-3UTR	ENST00000261978	ENST00000261978		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000261978	ENST00000556690		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000261978	ENST00000557425		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-3UTR	ENST00000556690	ENST00000261978		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000556690	ENST00000556690		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000556690	ENST00000557425		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-3UTR	ENST00000557425	ENST00000261978		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000557425	ENST00000556690		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
intron-intron	ENST00000557425	ENST00000557425		ChiTaRS3.1			AA382523	LTBP2	chr14	74966555	+	LTBP2	chr14	74966513	-
3UTR-3UTR	ENST00000371208	ENST00000371208		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
3UTR-intron	ENST00000371208	ENST00000465876		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
3UTR-intron	ENST00000371208	ENST00000395561		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-3UTR	ENST00000465876	ENST00000371208		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-intron	ENST00000465876	ENST00000465876		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-intron	ENST00000465876	ENST00000395561		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-3UTR	ENST00000395561	ENST00000371208		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-intron	ENST00000395561	ENST00000465876		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
intron-intron	ENST00000395561	ENST00000395561		ChiTaRS3.1			AA188823	HOOK1	chr1	60340083	-	HOOK1	chr1	60340131	+
3UTR-3CDS	ENST00000379261	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000379261	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000379261	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000416382	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000416382	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000416382	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-3CDS	ENST00000450189	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000450189	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000450189	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000542579	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000542579	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000542579	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000399850	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000399850	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000399850	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000417956	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000417956	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000417956	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-3CDS	ENST00000354440	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000354440	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000354440	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-3CDS	ENST00000427450	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000427450	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000427450	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-3CDS	ENST00000315874	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000315874	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
3UTR-intron	ENST00000315874	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000608830	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000608830	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000608830	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000609692	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000609692	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000609692	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000354897	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000354897	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000354897	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-3CDS	ENST00000537122	ENST00000349139		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000537122	ENST00000369441		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000537122	ENST00000471680		ChiTaRS3.1			AA639533	CELF2	chr10	11375247	-	WDR3	chr1	118497213	-
intron-intron	ENST00000221561	ENST00000541908		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000221561	ENST00000398864		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000221561	ENST00000266508		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000221561	ENST00000360995		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000327141	ENST00000541908		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000327141	ENST00000398864		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000327141	ENST00000266508		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000327141	ENST00000360995		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000592330	ENST00000541908		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000592330	ENST00000398864		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000592330	ENST00000266508		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000592330	ENST00000360995		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000586839	ENST00000541908		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000586839	ENST00000398864		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000586839	ENST00000266508		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000586839	ENST00000360995		ChiTaRS3.1			AA453443	AES	chr19	3053633	+	AEBP2	chr12	19607027	-
intron-intron	ENST00000342704	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000342704	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000375279	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000344201	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397798	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000346541	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000397800	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000492345	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000359606	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000491618	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000342704		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000375279		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000344201		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000397798		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000346541		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000397800		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000492345		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000359606		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000491618		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
intron-intron	ENST00000543126	ENST00000543126		ChiTaRS3.1			AA323513	CBFA2T2	chr20	32154118	+	CBFA2T2	chr20	32152985	+
3UTR-intron	ENST00000216044	ENST00000546088		ChiTaRS3.1			AA648423	GTPBP1	chr22	39129501	-	TAF1D	chr11	93474614	-
3UTR-5UTR	ENST00000216044	ENST00000448108		ChiTaRS3.1			AA648423	GTPBP1	chr22	39129501	-	TAF1D	chr11	93474614	-
intron-intron	ENST00000460605	ENST00000546088		ChiTaRS3.1			AA648423	GTPBP1	chr22	39129501	-	TAF1D	chr11	93474614	-
intron-5UTR	ENST00000460605	ENST00000448108		ChiTaRS3.1			AA648423	GTPBP1	chr22	39129501	-	TAF1D	chr11	93474614	-
3UTR-3CDS	ENST00000304636	ENST00000347401		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000304636	ENST00000353578		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000304636	ENST00000295550		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000304636	ENST00000472056		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000304636	ENST00000409809		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000304636	ENST00000346358		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000304636	ENST00000392004		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000304636	ENST00000392003		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000304636	ENST00000473258		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000347401		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000353578		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000295550		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000472056		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000409809		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-3CDS	ENST00000317840	ENST00000346358		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000317840	ENST00000392004		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000317840	ENST00000392003		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
3UTR-intron	ENST00000317840	ENST00000473258		ChiTaRS3.1			AA055353	COL3A1	chr2	189876582	-	COL6A3	chr2	238245123	+
intron-3CDS	ENST00000396652	ENST00000396652		ChiTaRS3.1			AA457413	SOSTDC1	chr7	16505331	+	SOSTDC1	chr7	16505187	-
intron-3CDS	ENST00000396652	ENST00000307068		ChiTaRS3.1			AA457413	SOSTDC1	chr7	16505331	+	SOSTDC1	chr7	16505187	-
intron-3CDS	ENST00000307068	ENST00000396652		ChiTaRS3.1			AA457413	SOSTDC1	chr7	16505331	+	SOSTDC1	chr7	16505187	-
intron-3CDS	ENST00000307068	ENST00000307068		ChiTaRS3.1			AA457413	SOSTDC1	chr7	16505331	+	SOSTDC1	chr7	16505187	-
3UTR-3CDS	ENST00000341267	ENST00000270625		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-3CDS	ENST00000341267	ENST00000596873		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-5UTR	ENST00000341267	ENST00000594493		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-intron	ENST00000341267	ENST00000599561		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-3CDS	ENST00000331224	ENST00000270625		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-3CDS	ENST00000331224	ENST00000596873		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-5UTR	ENST00000331224	ENST00000594493		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
3UTR-intron	ENST00000331224	ENST00000599561		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
intron-3CDS	ENST00000556051	ENST00000270625		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
intron-3CDS	ENST00000556051	ENST00000596873		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
intron-5UTR	ENST00000556051	ENST00000594493		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
intron-intron	ENST00000556051	ENST00000599561		ChiTaRS3.1			AA368503	DLK1	chr14	101201247	-	RPS11	chr19	50000561	+
intron-intron	ENST00000265594	ENST00000366956		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000265594	ENST00000543945		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000265594	ENST00000491277		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000492597	ENST00000366956		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000492597	ENST00000543945		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000492597	ENST00000491277		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000539926	ENST00000366956		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000539926	ENST00000543945		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000539926	ENST00000491277		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000489909	ENST00000366956		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000489909	ENST00000543945		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-intron	ENST00000489909	ENST00000491277		ChiTaRS3.1			AA505323	MCCC1	chr3	182747860	+	PTPN14	chr1	214598488	+
intron-3CDS	ENST00000434748	ENST00000262027		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-3CDS	ENST00000434748	ENST00000315473		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-intron	ENST00000434748	ENST00000447721		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-3CDS	ENST00000261673	ENST00000262027		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-3CDS	ENST00000261673	ENST00000315473		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-intron	ENST00000261673	ENST00000447721		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-3CDS	ENST00000542061	ENST00000262027		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-3CDS	ENST00000542061	ENST00000315473		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
intron-intron	ENST00000542061	ENST00000447721		ChiTaRS3.1			AA345023	FBRSL1	chr12	133147703	+	MARS	chr12	57909054	+
3UTR-3UTR	ENST00000287908	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000287908	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-3UTR	ENST00000287908	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000287908	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000287908	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000287908	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000287908	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394626	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394626	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394626	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394626	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394626	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394626	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394626	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-3UTR	ENST00000394622	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000394622	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-3UTR	ENST00000394622	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000394622	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000394622	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000394622	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
3UTR-intron	ENST00000394622	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394632	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394632	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394632	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394632	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394632	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394632	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394632	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394621	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394621	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394621	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394621	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394621	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394621	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394621	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000402625	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000402625	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000402625	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000402625	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000402625	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000402625	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000402625	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394629	ENST00000287908		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394629	ENST00000394626		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3UTR	ENST00000394629	ENST00000394622		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394629	ENST00000394632		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394629	ENST00000394621		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394629	ENST00000402625		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-intron	ENST00000394629	ENST00000394629		ChiTaRS3.1			AA523333	STEAP2	chr7	89864818	+	STEAP2	chr7	89864883	-
intron-3CDS	ENST00000548898	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548898	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000548898	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552067	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552067	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000420846	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000420846	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000548160	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000548160	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000546939	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000546939	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552692	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552692	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000549117	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000549117	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000257857	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000257857	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000552754	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000552754	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000424085		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000257075		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373747		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000426105		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000440538		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373741		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000423018		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-3CDS	ENST00000550776	ENST00000373742		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
intron-5UTR	ENST00000550776	ENST00000490546		ChiTaRS3.1			BF814933	CD63	chr12	56120031	+	PUM1	chr1	31439038	-
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000449187		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000479257		ChiTaRS3.1			AA513493	CALU	chr7	128409485	+	CALU	chr7	128409552	-
intron-intron	ENST00000358763	ENST00000344415		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-intron	ENST00000358763	ENST00000577213		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-intron	ENST00000332840	ENST00000344415		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-intron	ENST00000332840	ENST00000577213		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-intron	ENST00000467095	ENST00000344415		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-intron	ENST00000467095	ENST00000577213		ChiTaRS3.1			DQ376080	SYN3	chr22	33429368	+	GRAPL	chr17	19059801	+
intron-3CDS	ENST00000383737	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000383737	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000383737	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000395734	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000395734	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000426837	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000426837	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000360240	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000360240	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000439356	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000439356	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000264724	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000264724	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000420772	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000420772	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000441748	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000441748	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000462206	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000462206	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000532636		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000533540		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000453788		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000534624		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000227378		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000534319		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-3CDS	ENST00000434267	ENST00000526110		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
intron-5UTR	ENST00000434267	ENST00000526862		ChiTaRS3.1			AA063643	MAP4	chr3	47912490	+	HSPA8	chr11	122930412	+
3UTR-3CDS	ENST00000591090	ENST00000221265		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
3UTR-3CDS	ENST00000591090	ENST00000595564		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
3UTR-3CDS	ENST00000591090	ENST00000221266		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
3UTR-3CDS	ENST00000357332	ENST00000221265		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
3UTR-3CDS	ENST00000357332	ENST00000595564		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
3UTR-3CDS	ENST00000357332	ENST00000221266		ChiTaRS3.1			AA236423	ASNA1	chr19	12859073	-	PAF1	chr19	39880146	+
intron-3UTR	ENST00000519824	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519824	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000519824	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000522746	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000522746	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000523509	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000523509	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000401979	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000401979	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-3UTR	ENST00000519110	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
5CDS-intron	ENST00000519110	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522250	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000522250	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000517654	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000517654	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000519540	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000519540	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000522941	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000522941	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519824		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522746		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000523509		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000401979		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519110		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522250		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000517654		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000519540		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-3UTR	ENST00000518879	ENST00000522941		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000518879	ENST00000518879		ChiTaRS3.1			AA483073	FAM49B	chr8	130853716	-	FAM49B	chr8	130853857	+
intron-intron	ENST00000543491	ENST00000543491		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000543491	ENST00000509925		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000543491	ENST00000361762		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000509925	ENST00000543491		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000509925	ENST00000509925		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000509925	ENST00000361762		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000361762	ENST00000543491		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000361762	ENST00000509925		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-intron	ENST00000361762	ENST00000361762		ChiTaRS3.1			AA468303	PCDH7	chr4	30896041	+	PCDH7	chr4	30895949	-
intron-3UTR	ENST00000342983	ENST00000342983		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000342983	ENST00000370874		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000342983	ENST00000460462		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-3UTR	ENST00000370874	ENST00000342983		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-intron	ENST00000370874	ENST00000370874		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
5CDS-intron	ENST00000370874	ENST00000460462		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-3UTR	ENST00000460462	ENST00000342983		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000460462	ENST00000370874		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000460462	ENST00000460462		ChiTaRS3.1			BG986113	RAP2C	chrX	131338680	+	RAP2C	chrX	131338396	-
intron-intron	ENST00000227638	ENST00000227638		ChiTaRS3.1			AA470573	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000227638	ENST00000436171		ChiTaRS3.1			AA470573	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000227638		ChiTaRS3.1			AA470573	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000436171		ChiTaRS3.1			AA470573	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-3CDS	ENST00000331768	ENST00000331768		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000331768	ENST00000329331		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000331768	ENST00000436070		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000331768	ENST00000453938		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000331768		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000329331		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000329331	ENST00000436070		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000329331	ENST00000453938		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000331768		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000329331		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000436070	ENST00000436070		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000436070	ENST00000453938		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000331768		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000329331		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-3CDS	ENST00000453938	ENST00000436070		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
intron-5UTR	ENST00000453938	ENST00000453938		ChiTaRS3.1			AA090763	SETD3	chr14	99864793	-	SETD3	chr14	99924762	-
3UTR-3UTR	ENST00000412278	ENST00000412278		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
3UTR-intron	ENST00000412278	ENST00000511114		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
3UTR-3UTR	ENST00000412278	ENST00000500635		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
intron-3UTR	ENST00000511114	ENST00000412278		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
intron-intron	ENST00000511114	ENST00000511114		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
intron-3UTR	ENST00000511114	ENST00000500635		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
3UTR-3UTR	ENST00000500635	ENST00000412278		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
3UTR-intron	ENST00000500635	ENST00000511114		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
3UTR-3UTR	ENST00000500635	ENST00000500635		ChiTaRS3.1			AA188793	RBM14-RBM4	chr11	66413678	-	RBM14-RBM4	chr11	66413534	+
intron-intron	ENST00000465812	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
intron-intron	ENST00000465812	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000409052	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000409052	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000361779	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000361779	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000259206	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000259206	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000354115	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
3UTR-intron	ENST00000354115	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
intron-intron	ENST00000409930	ENST00000381989		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
intron-intron	ENST00000409930	ENST00000480576		ChiTaRS3.1			AA527443	IL1RN	chr2	113891472	-	PARP4	chr13	25026176	+
intron-3CDS	ENST00000330574	ENST00000330574		ChiTaRS3.1			AA204683	INTS5	chr11	62414418	+	INTS5	chr11	62414798	-
intron-3UTR	ENST00000367249	ENST00000367249		ChiTaRS3.1			AA452663	CYB5R1	chr1	202932857	+	CYB5R1	chr1	202931583	-
intron-5UTR	ENST00000367249	ENST00000497655		ChiTaRS3.1			AA452663	CYB5R1	chr1	202932857	+	CYB5R1	chr1	202931583	-
intron-3UTR	ENST00000497655	ENST00000367249		ChiTaRS3.1			AA452663	CYB5R1	chr1	202932857	+	CYB5R1	chr1	202931583	-
intron-5UTR	ENST00000497655	ENST00000497655		ChiTaRS3.1			AA452663	CYB5R1	chr1	202932857	+	CYB5R1	chr1	202931583	-
3UTR-3UTR	ENST00000447897	ENST00000447897		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000447897	ENST00000370490		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000447897	ENST00000434188		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000447897	ENST00000428560		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000447897	ENST00000413937		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000370490	ENST00000447897		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000370490	ENST00000370490		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000370490	ENST00000434188		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000370490	ENST00000428560		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000370490	ENST00000413937		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000434188	ENST00000447897		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000434188	ENST00000370490		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000434188	ENST00000434188		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000434188	ENST00000428560		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000434188	ENST00000413937		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000428560	ENST00000447897		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000428560	ENST00000370490		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000428560	ENST00000434188		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000428560	ENST00000428560		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000428560	ENST00000413937		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000413937	ENST00000447897		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000413937	ENST00000370490		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000413937	ENST00000434188		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000413937	ENST00000428560		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
3UTR-3UTR	ENST00000413937	ENST00000413937		ChiTaRS3.1			AA449213	SLITRK2	chrX	144906841	+	SLITRK2	chrX	144906681	-
Frame-shit	ENST00000371714	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371714		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371710		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000337809		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000435686		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000447887		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000453295		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000428468		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000530544		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000531828		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000361556		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000473207		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000462759		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000486942		ChiTaRS3.1			AA654943	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000541502	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000541502	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000541502	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000541502	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000409404	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000409404	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000409404	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000409404	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000298047	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000298047	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000298047	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000298047	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000525166	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000525166	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000525166	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000525166	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000533797	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000533797	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000533797	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000533797	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000489716	ENST00000293217		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000489716	ENST00000537812		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000489716	ENST00000301608		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
intron-intron	ENST00000489716	ENST00000591857		ChiTaRS3.1			AA174053	FAT3	chr11	92490864	-	ACOX1	chr17	73971593	+
3UTR-3CDS	ENST00000274712	ENST00000331925		ChiTaRS3.1			AA595243	ZMAT2	chr5	140085915	-	ACTG1	chr17	79478498	-
3UTR-3CDS	ENST00000274712	ENST00000573283		ChiTaRS3.1			AA595243	ZMAT2	chr5	140085915	-	ACTG1	chr17	79478498	-
3UTR-3CDS	ENST00000274712	ENST00000575842		ChiTaRS3.1			AA595243	ZMAT2	chr5	140085915	-	ACTG1	chr17	79478498	-
3UTR-3CDS	ENST00000274712	ENST00000575087		ChiTaRS3.1			AA595243	ZMAT2	chr5	140085915	-	ACTG1	chr17	79478498	-
intron-intron	ENST00000476233	ENST00000476233		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000476233	ENST00000354667		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000476233	ENST00000356674		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000354667	ENST00000476233		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000354667	ENST00000354667		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000354667	ENST00000356674		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000356674	ENST00000476233		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000356674	ENST00000354667		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-intron	ENST00000356674	ENST00000356674		ChiTaRS3.1			AA482823	HNRNPA2B1	chr7	26229657	-	HNRNPA2B1	chr7	26229547	+
intron-3UTR	ENST00000265077	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000265077	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000342785	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000342785	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000343200	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000343200	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000512590	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000512590	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000502527	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000502527	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000513016	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000513016	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3UTR	ENST00000513984	ENST00000225276		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-intron	ENST00000513984	ENST00000586520		ChiTaRS3.1			AA234873	VCAN	chr5	82814674	-	ST6GALNAC2	chr17	74562133	+
intron-3CDS	ENST00000508244	ENST00000237530		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000508244	ENST00000373622		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-intron	ENST00000508244	ENST00000470352		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000274258	ENST00000237530		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000274258	ENST00000373622		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-intron	ENST00000274258	ENST00000470352		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000425232	ENST00000237530		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000425232	ENST00000373622		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-intron	ENST00000425232	ENST00000470352		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000512288	ENST00000237530		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-3CDS	ENST00000512288	ENST00000373622		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-intron	ENST00000512288	ENST00000470352		ChiTaRS3.1			AA367913	C5orf42	chr5	37201819	+	RPN2	chr20	35812749	+
intron-intron	ENST00000474820	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000505350		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000457016		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000257430		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000508376		ChiTaRS3.1			AA418863	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
Frame-shit	ENST00000322644	ENST00000322644		ChiTaRS3.1			BF512093	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000322644	ENST00000572844		ChiTaRS3.1			BF512093	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000572844	ENST00000322644		ChiTaRS3.1			BF512093	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
Frame-shit	ENST00000572844	ENST00000572844		ChiTaRS3.1			BF512093	POLR2A	chr17	7400828	+	POLR2A	chr17	7401430	-
intron-intron	ENST00000379122	ENST00000379122		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-3UTR	ENST00000379122	ENST00000332496		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-intron	ENST00000379122	ENST00000560263		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-3UTR	ENST00000379122	ENST00000411539		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-intron	ENST00000332496	ENST00000379122		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-3UTR	ENST00000332496	ENST00000332496		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-intron	ENST00000332496	ENST00000560263		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-3UTR	ENST00000332496	ENST00000411539		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-intron	ENST00000560263	ENST00000379122		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-3UTR	ENST00000560263	ENST00000332496		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-intron	ENST00000560263	ENST00000560263		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
intron-3UTR	ENST00000560263	ENST00000411539		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-intron	ENST00000411539	ENST00000379122		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-3UTR	ENST00000411539	ENST00000332496		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-intron	ENST00000411539	ENST00000560263		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-3UTR	ENST00000411539	ENST00000411539		ChiTaRS3.1			AA534183	SEMA4B	chr15	90772705	-	SEMA4B	chr15	90772628	+
3UTR-3UTR	ENST00000319023	ENST00000319023		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-3UTR	ENST00000319023	ENST00000539574		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-3UTR	ENST00000319023	ENST00000530055		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-intron	ENST00000319023	ENST00000526039		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
5CDS-3UTR	ENST00000539574	ENST00000319023		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
5CDS-3UTR	ENST00000539574	ENST00000539574		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
5CDS-3UTR	ENST00000539574	ENST00000530055		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
5CDS-intron	ENST00000539574	ENST00000526039		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-3UTR	ENST00000530055	ENST00000319023		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-3UTR	ENST00000530055	ENST00000539574		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-3UTR	ENST00000530055	ENST00000530055		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
3UTR-intron	ENST00000530055	ENST00000526039		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
intron-3UTR	ENST00000526039	ENST00000319023		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
intron-3UTR	ENST00000526039	ENST00000539574		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
intron-3UTR	ENST00000526039	ENST00000530055		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
intron-intron	ENST00000526039	ENST00000526039		ChiTaRS3.1			AA469253	NADSYN1	chr11	71212578	+	NADSYN1	chr11	71212499	-
Frame-shit	ENST00000245544	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000245544	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000245544	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000245544	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000245544	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000245544	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000245544	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000541827	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000541827	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000541827	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000541827	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000541827	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000541827	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000541827	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000579324	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579324	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579324	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579324	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579324	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579324	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579324	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000449421	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-intron	ENST00000449421	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-intron	ENST00000449421	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3UTR	ENST00000449421	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3UTR	ENST00000449421	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000579298	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579298	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000579298	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579298	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000579298	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579298	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000579298	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3CDS	ENST00000447371	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-intron	ENST00000447371	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-intron	ENST00000447371	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3UTR	ENST00000447371	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
3UTR-3UTR	ENST00000447371	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
Frame-shit	ENST00000540768	ENST00000245544		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000540768	ENST00000541827		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
In-frame	ENST00000540768	ENST00000579324		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000540768	ENST00000449421		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-intron	ENST00000540768	ENST00000579298		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000540768	ENST00000447371		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
5CDS-3UTR	ENST00000540768	ENST00000540768		ChiTaRS3.1			CB243613	NUP85	chr17	73231748	-	NUP85	chr17	73231707	+
intron-3CDS	ENST00000419748	ENST00000419748		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-3CDS	ENST00000419748	ENST00000303236		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-5UTR	ENST00000419748	ENST00000470706		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-3CDS	ENST00000303236	ENST00000419748		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-3CDS	ENST00000303236	ENST00000303236		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-5UTR	ENST00000303236	ENST00000470706		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-3CDS	ENST00000470706	ENST00000419748		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-3CDS	ENST00000470706	ENST00000303236		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-5UTR	ENST00000470706	ENST00000470706		ChiTaRS3.1			AA214233	EIF2AK3	chr2	88874555	+	EIF2AK3	chr2	88874459	-
intron-intron	ENST00000343455	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000343455	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000526495	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000393063	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527416	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000527414	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000556045	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000367385		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000538004		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000367383		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-intron	ENST00000541352	ENST00000417895		ChiTaRS3.1			AA248863	DICER1	chr14	95556396	+	NEK7	chr1	198240917	-
intron-3UTR	ENST00000469100	ENST00000375759		ChiTaRS3.1			AA159603	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000469100	ENST00000471538		ChiTaRS3.1			AA159603	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-3UTR	ENST00000373477	ENST00000375759		ChiTaRS3.1			AA159603	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-intron	ENST00000373477	ENST00000471538		ChiTaRS3.1			AA159603	YARS	chr1	33241178	+	SPEN	chr1	16266221	+
intron-3UTR	ENST00000341756	ENST00000341756		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000341756	ENST00000360961		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-5UTR	ENST00000341756	ENST00000487218		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000360961	ENST00000341756		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000360961	ENST00000360961		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-5UTR	ENST00000360961	ENST00000487218		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000487218	ENST00000341756		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000487218	ENST00000360961		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-5UTR	ENST00000487218	ENST00000487218		ChiTaRS3.1			AA642853	MPC1	chr6	166778668	-	MPC1	chr6	166778630	+
intron-3UTR	ENST00000319194	ENST00000337620		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000319194	ENST00000396386		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000319194	ENST00000409747		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-intron	ENST00000319194	ENST00000497498		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000441424	ENST00000337620		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000441424	ENST00000396386		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000441424	ENST00000409747		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-intron	ENST00000441424	ENST00000497498		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000319212	ENST00000337620		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000319212	ENST00000396386		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000319212	ENST00000409747		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-intron	ENST00000319212	ENST00000497498		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000568874	ENST00000337620		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000568874	ENST00000396386		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000568874	ENST00000409747		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-intron	ENST00000568874	ENST00000497498		ChiTaRS3.1			AA365643	DIS3L	chr15	66624860	-	CBX3	chr7	26252224	+
intron-3UTR	ENST00000285208	ENST00000285208		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000285208	ENST00000543906		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000285208	ENST00000469959		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000285208	ENST00000486858		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000543906	ENST00000285208		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000543906	ENST00000543906		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000543906	ENST00000469959		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000543906	ENST00000486858		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000469959	ENST00000285208		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000469959	ENST00000543906		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000469959	ENST00000469959		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000469959	ENST00000486858		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000486858	ENST00000285208		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-3UTR	ENST00000486858	ENST00000543906		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000486858	ENST00000469959		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
intron-intron	ENST00000486858	ENST00000486858		ChiTaRS3.1			AA427473	RAB6B	chr3	133543823	-	RAB6B	chr3	133545374	-
3UTR-intron	ENST00000265881	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000265881	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000379061		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000457710		ChiTaRS3.1			AA508773	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-3CDS	ENST00000404233	ENST00000404233		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000529972		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000525859		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000543287		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000404233		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000529972		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000525859		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000543287		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000404233		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000529972		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000525859		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000543287		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000404233		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000529972		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000525859		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000543287		ChiTaRS3.1			AA356643	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3UTR	ENST00000357613	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000357613	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000357613	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000357613	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000357613	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000357613	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000569540	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000569540	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569540	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569540	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569540	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569540	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000561878	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000561878	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000561878	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000561878	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000561878	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000561878	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000567796	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000567796	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000567796	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000567796	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000567796	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000567796	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000566980	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000566980	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000566980	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000566980	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000566980	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000566980	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000569276	ENST00000357613		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-3UTR	ENST00000569276	ENST00000569540		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569276	ENST00000561878		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569276	ENST00000567796		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569276	ENST00000566980		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000569276	ENST00000569276		ChiTaRS3.1			AA225763	TMEM170A	chr16	75479503	-	TMEM170A	chr16	75479808	-
intron-intron	ENST00000324306	ENST00000515655		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000324306	ENST00000237612		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000426572	ENST00000515655		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000426572	ENST00000237612		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000535170	ENST00000515655		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000535170	ENST00000237612		ChiTaRS3.1			AA001604	ZKSCAN1	chr7	99630076	+	ABCG2	chr4	89072623	-
intron-intron	ENST00000607272	ENST00000607272		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000607272	ENST00000234420		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000607272	ENST00000540021		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000607272	ENST00000538136		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5CDS-intron	ENST00000234420	ENST00000607272		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5CDS-intron	ENST00000234420	ENST00000234420		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5CDS-intron	ENST00000234420	ENST00000540021		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5CDS-intron	ENST00000234420	ENST00000538136		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000540021	ENST00000607272		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000540021	ENST00000234420		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000540021	ENST00000540021		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
intron-intron	ENST00000540021	ENST00000538136		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5UTR-intron	ENST00000538136	ENST00000607272		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5UTR-intron	ENST00000538136	ENST00000234420		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5UTR-intron	ENST00000538136	ENST00000540021		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
5UTR-intron	ENST00000538136	ENST00000538136		ChiTaRS3.1			AA001996	MSH6	chr2	48018264	+	MSH6	chr2	48028979	-
3UTR-3UTR	ENST00000323116	ENST00000229416		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
3UTR-intron	ENST00000323116	ENST00000514004		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
intron-3UTR	ENST00000493826	ENST00000229416		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
intron-intron	ENST00000493826	ENST00000514004		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
intron-3UTR	ENST00000482794	ENST00000229416		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
intron-intron	ENST00000482794	ENST00000514004		ChiTaRS3.1			AA010005	ATP11B	chr3	182639276	-	GCLC	chr6	53363169	+
intron-3UTR	ENST00000295688	ENST00000391993		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000295688	ENST00000373327		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000295688	ENST00000391994		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368259	ENST00000391993		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368259	ENST00000373327		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368259	ENST00000391994		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368261	ENST00000391993		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368261	ENST00000373327		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368261	ENST00000391994		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000472765	ENST00000391993		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000472765	ENST00000373327		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000472765	ENST00000391994		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368256	ENST00000391993		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368256	ENST00000373327		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
intron-3UTR	ENST00000368256	ENST00000391994		ChiTaRS3.1			AA010637	CCT3	chr1	156307005	+	TRAF3IP1	chr2	239309191	-
In-frame	ENST00000439590	ENST00000421834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
In-frame	ENST00000439590	ENST00000370769		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000312431		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000370754		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000370788		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000361203		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000244364		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000439590	ENST00000446842		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000439590	ENST00000340834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000439590	ENST00000370765		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000439590	ENST00000518935		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000311111	ENST00000421834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000311111	ENST00000370769		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000312431		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000370754		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000370788		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000361203		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000244364		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000311111	ENST00000446842		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000311111	ENST00000340834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000311111	ENST00000370765		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000311111	ENST00000518935		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000584577	ENST00000421834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000584577	ENST00000370769		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000312431		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000370754		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000370788		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000361203		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000244364		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000584577	ENST00000446842		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000584577	ENST00000340834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000584577	ENST00000370765		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000584577	ENST00000518935		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3CDS	ENST00000534490	ENST00000421834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3CDS	ENST00000534490	ENST00000370769		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000312431		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000370754		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000370788		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000361203		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000244364		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-3UTR	ENST00000534490	ENST00000446842		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-intron	ENST00000534490	ENST00000340834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-intron	ENST00000534490	ENST00000370765		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-intron	ENST00000534490	ENST00000518935		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000533498	ENST00000421834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
Frame-shit	ENST00000533498	ENST00000370769		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000312431		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000370754		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000370788		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000361203		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000244364		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-3UTR	ENST00000533498	ENST00000446842		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000533498	ENST00000340834		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000533498	ENST00000370765		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
5CDS-intron	ENST00000533498	ENST00000518935		ChiTaRS3.1			AA017134	RPL38	chr17	72205967	-	DST	chr6	56330941	-
intron-intron	ENST00000418724	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418724	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418724	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418724	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000431845	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000431845	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000431845	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000431845	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548019	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548019	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548019	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548019	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000416097	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000416097	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000416097	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000416097	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000547592	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000547592	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000547592	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000547592	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418540	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418540	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418540	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000418540	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548484	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548484	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548484	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000548484	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000445320	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000445320	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000445320	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000445320	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000552144	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000552144	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000552144	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000552144	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000383196	ENST00000244007		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000383196	ENST00000373272		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000383196	ENST00000373271		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-intron	ENST00000383196	ENST00000608689		ChiTaRS3.1			AA018565	ZBTB22	chr6	4514523	+	PLCG1	chr20	39797506	-
intron-3CDS	ENST00000395782	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395782	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395782	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395782	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395782	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395782	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000395782	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395783	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395783	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395783	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395783	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395783	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395783	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000395783	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000435340	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000435340	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000435340	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000435340	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000435340	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000435340	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000435340	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000255389	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000255389	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000255389	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000255389	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000255389	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000255389	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000255389	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395781	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395781	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395781	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000395781	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395781	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000395781	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000395781	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000484838	ENST00000360168		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000484838	ENST00000358945		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000484838	ENST00000540037		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3CDS	ENST00000484838	ENST00000228916		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000484838	ENST00000396966		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-3UTR	ENST00000484838	ENST00000543768		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000484838	ENST00000538979		ChiTaRS3.1			AA035445	PEMT	chr17	17427066	+	SCNN1A	chr12	6457185	+
intron-intron	ENST00000241261	ENST00000274376		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-3UTR	ENST00000241261	ENST00000456692		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-intron	ENST00000241261	ENST00000512763		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-intron	ENST00000241261	ENST00000506290		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-intron	ENST00000420541	ENST00000274376		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-3UTR	ENST00000420541	ENST00000456692		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-intron	ENST00000420541	ENST00000512763		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
intron-intron	ENST00000420541	ENST00000506290		ChiTaRS3.1			AA043924	TNFSF10	chr3	172233089	-	RASA1	chr5	86687069	+
3UTR-intron	ENST00000275532	ENST00000378119		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
3UTR-intron	ENST00000275532	ENST00000540769		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
3UTR-intron	ENST00000275532	ENST00000378102		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000378119		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000540769		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000378102		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000378119		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000540769		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000378102		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000378119		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000540769		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000378102		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000378119		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000540769		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000378102		ChiTaRS3.1			AA046787	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			AA046884	COL1A1	chr17	48261707	+	COL1A1	chr17	48261924	-
intron-3UTR	ENST00000570010	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000570010	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000570010	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000563356	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000563356	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000563356	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000568079	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000568079	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000568079	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000464850	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000464850	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000464850	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000332307	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000332307	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000332307	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-3UTR	ENST00000393430	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-intron	ENST00000393430	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-intron	ENST00000393430	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000567481	ENST00000232978		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000567481	ENST00000460910		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000567481	ENST00000442970		ChiTaRS3.1			AA047834	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000393792	ENST00000398637		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-intron	ENST00000393792	ENST00000549049		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-intron	ENST00000393792	ENST00000439706		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-intron	ENST00000393792	ENST00000546893		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-intron	ENST00000393792	ENST00000549633		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-intron	ENST00000393792	ENST00000552197		ChiTaRS3.1			AA053204	UBTD2	chr5	171690883	-	SLC38A1	chr12	46579265	-
intron-3UTR	ENST00000537403	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000537403	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000307712	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000307712	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000536508	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000536508	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000545328	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000545328	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000553925	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000553925	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000548032	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000548032	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000557280	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000557280	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000553970	ENST00000282026		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-intron	ENST00000553970	ENST00000490932		ChiTaRS3.1			AA057305	SEC23A	chr14	39533179	-	ARL11	chr13	50205498	+
intron-3UTR	ENST00000357389	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000357389	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000357389	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000357389	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000357389	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000357389	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000327773	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000327773	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000327773	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000327773	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000327773	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000327773	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000476291	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000476291	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000476291	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000476291	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000476291	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000476291	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000418959	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000418959	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000418959	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000418959	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000418959	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000418959	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000450766	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000450766	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000450766	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000450766	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000450766	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000450766	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000355761	ENST00000357389		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000355761	ENST00000327773		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000355761	ENST00000476291		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000355761	ENST00000418959		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000355761	ENST00000450766		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-3UTR	ENST00000355761	ENST00000355761		ChiTaRS3.1			AA057674	GAS6	chr13	114523763	+	GAS6	chr13	114523834	-
intron-intron	ENST00000405008	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000405008	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000405008	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000405008	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000405008	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000405008	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000402114	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394754	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000309827	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000394751	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000405008		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000402114		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000394754		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000309827		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000394751		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-intron	ENST00000463040	ENST00000463040		ChiTaRS3.1			AA063164	STON1-GTF2A1L	chr2	48761195	-	STON1-GTF2A1L	chr2	48761677	-
intron-3UTR	ENST00000529639	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000529639	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000529639	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000529639	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000531743	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000531743	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000531743	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000531743	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000525297	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000525297	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000525297	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000525297	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000527548	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000527548	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000527548	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000527548	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000279259	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000279259	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000279259	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000279259	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000529259	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000529259	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000529259	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000529259	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000434372	ENST00000229195		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-3UTR	ENST00000434372	ENST00000418359		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000434372	ENST00000548230		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000434372	ENST00000551483		ChiTaRS3.1			AA071465	FAU	chr11	64888154	+	CNOT2	chr12	70747715	+
intron-intron	ENST00000307630	ENST00000307630		ChiTaRS3.1			AA078674	YWHAG	chr7	75974033	-	YWHAG	chr7	75974114	+
intron-3CDS	ENST00000548898	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000548898	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000552067	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000552067	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000420846	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000420846	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000548160	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000548160	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000546939	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000546939	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000552692	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000552692	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000549117	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000549117	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000257857	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000257857	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000552754	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000552754	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3CDS	ENST00000550776	ENST00000299138		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-intron	ENST00000550776	ENST00000568642		ChiTaRS3.1			AA083694	CD63	chr12	56119351	+	VPS35	chr16	46695709	-
intron-3UTR	ENST00000442283	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000442283	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000318218	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000522463	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000521420	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000347377	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000377576	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000541131	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000435847	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000442283		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000318218		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000522463		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000521420		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000347377		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000377576		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000541131		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000435847		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000520960	ENST00000520960		ChiTaRS3.1			AA095535	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000372390	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372390	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372390	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372390	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372390	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372390	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372390	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372390	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372397	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372397	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372397	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000315660	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000315660	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000315660	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372383	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372383	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372383	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372384	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372384	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372384	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000372382	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372382	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000372382	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000506081	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000506081	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000506081	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000372390		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000372397		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000315660		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000372383		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000372384		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-3UTR	ENST00000514426	ENST00000372382		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000514426	ENST00000506081		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000514426	ENST00000514426		ChiTaRS3.1			AA098994	TSC22D3	chrX	106957239	+	TSC22D3	chrX	106957335	-
intron-intron	ENST00000397821	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000397821	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379716	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379698	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000541422	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000379697	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000446120		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000271227		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000527077		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000529450		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000467909		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000532427		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-intron	ENST00000477102	ENST00000530397		ChiTaRS3.1			AA102165	SH3KBP1	chrX	19831479	-	SLC44A3	chr1	95357470	+
intron-3UTR	ENST00000367274	ENST00000262030		ChiTaRS3.1			AA128804	UBE2T	chr1	202304725	-	ATP5B	chr12	57032021	-
intron-3UTR	ENST00000367274	ENST00000552919		ChiTaRS3.1			AA128804	UBE2T	chr1	202304725	-	ATP5B	chr12	57032021	-
intron-intron	ENST00000367274	ENST00000550162		ChiTaRS3.1			AA128804	UBE2T	chr1	202304725	-	ATP5B	chr12	57032021	-
In-frame	ENST00000302516	ENST00000302516		ChiTaRS3.1			AA135074	SF3B3	chr16	70599331	-	SF3B3	chr16	70601327	+
intron-5UTR	ENST00000481781	ENST00000608395		ChiTaRS3.1			AA136475	INS-IGF2	chr11	2150511	+	MBNL1-AS1	chr3	151985184	+
intron-intron	ENST00000481781	ENST00000445466		ChiTaRS3.1			AA136475	INS-IGF2	chr11	2150511	+	MBNL1-AS1	chr3	151985184	+
intron-5UTR	ENST00000397270	ENST00000608395		ChiTaRS3.1			AA136475	INS-IGF2	chr11	2150511	+	MBNL1-AS1	chr3	151985184	+
intron-intron	ENST00000397270	ENST00000445466		ChiTaRS3.1			AA136475	INS-IGF2	chr11	2150511	+	MBNL1-AS1	chr3	151985184	+
intron-intron	ENST00000305123	ENST00000324616		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-intron	ENST00000305123	ENST00000405531		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-intron	ENST00000305123	ENST00000398716		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-intron	ENST00000498335	ENST00000324616		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-intron	ENST00000498335	ENST00000405531		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-intron	ENST00000498335	ENST00000398716		ChiTaRS3.1			AA136914	IRS1	chr2	227600969	+	C12orf40	chr12	40099503	-
intron-3UTR	ENST00000587394	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000587394	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000587394	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000587394	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000587962	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000587962	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000587962	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000587962	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000586608	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000586608	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000586608	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000586608	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000589097	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000589097	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000589097	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000589097	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000591099	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000591099	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000591099	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000591099	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000326631	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000326631	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000326631	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000326631	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000589791	ENST00000361175		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3UTR	ENST00000589791	ENST00000456849		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000589791	ENST00000427144		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-intron	ENST00000589791	ENST00000482258		ChiTaRS3.1			AA149744	PLEKHJ1	chr19	2233290	+	PAPSS2	chr10	89506245	+
intron-3CDS	ENST00000588408	ENST00000361523		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
intron-3CDS	ENST00000588408	ENST00000590099		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
intron-intron	ENST00000588408	ENST00000438274		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
intron-3CDS	ENST00000588527	ENST00000361523		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
intron-3CDS	ENST00000588527	ENST00000590099		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
intron-intron	ENST00000588527	ENST00000438274		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
3UTR-3CDS	ENST00000315066	ENST00000361523		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
3UTR-3CDS	ENST00000315066	ENST00000590099		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
3UTR-intron	ENST00000315066	ENST00000438274		ChiTaRS3.1			AA158625	CNTD1	chr17	40962750	-	BECN1	chr17	40963699	+
Frame-shit	ENST00000543774	ENST00000543774		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000543774	ENST00000448516		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000543774	ENST00000219797		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000448516	ENST00000543774		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000448516	ENST00000448516		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000448516	ENST00000219797		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000219797	ENST00000543774		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000219797	ENST00000448516		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
Frame-shit	ENST00000219797	ENST00000219797		ChiTaRS3.1			AA159555	KAT8	chr16	31141859	+	KAT8	chr16	31141619	-
intron-intron	ENST00000442011	ENST00000383329		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000376228		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000423509		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000430940		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000422726		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000424832		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000458192		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000422921		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000456487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000420206		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000495725		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000419135		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000433153		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000429840		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000457903		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000479546		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000400395		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000383323		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000434884		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000400394		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000494871		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000453809		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000414249		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000419590		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000438171		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000552865		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000495898		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000383483		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000383487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000458668		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000442011	ENST00000400341		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000383329		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000376228		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000423509		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000430940		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000422726		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000424832		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000458192		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000422921		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000456487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000420206		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000495725		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000419135		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000433153		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000429840		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000457903		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000479546		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000400395		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000383323		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000434884		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000400394		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000494871		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000453809		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000414249		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000419590		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000438171		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000552865		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000495898		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000383483		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000383487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000458668		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000305126	ENST00000400341		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000383329		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000376228		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000423509		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000430940		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000422726		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000424832		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000458192		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000422921		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000456487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000420206		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000495725		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000419135		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000433153		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000429840		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000457903		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000479546		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000400395		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000383323		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000434884		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000400394		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000494871		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000453809		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000414249		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000419590		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000438171		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000552865		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000495898		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000383483		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000383487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000458668		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000508076	ENST00000400341		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000383329		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000376228		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000423509		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000430940		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000422726		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000424832		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000458192		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000422921		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000456487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000420206		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000495725		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000419135		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000433153		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000429840		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000457903		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000479546		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000400395		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000383323		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000434884		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000400394		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000494871		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000453809		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000414249		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000419590		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000438171		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000552865		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000495898		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000383483		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000383487		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000458668		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000504185	ENST00000400341		ChiTaRS3.1			AA166724	TGFBI	chr5	135398878	-	HLA-C	chr6	2617692	-
intron-intron	ENST00000536163	ENST00000310961		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000536163	ENST00000370958		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000536163	ENST00000035383		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000536163	ENST00000415775		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000536163	ENST00000565615		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000482493	ENST00000310961		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000482493	ENST00000370958		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000482493	ENST00000035383		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000482493	ENST00000415775		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
intron-intron	ENST00000482493	ENST00000565615		ChiTaRS3.1			AA169324	KIAA1147	chr7	141360934	-	LRRC7	chr1	70346300	+
In-frame	ENST00000336273	ENST00000336273		ChiTaRS3.1			AA171915	MTDH	chr8	98735263	+	MTDH	chr8	98703180	+
In-frame	ENST00000336273	ENST00000519934		ChiTaRS3.1			AA171915	MTDH	chr8	98735263	+	MTDH	chr8	98703180	+
In-frame	ENST00000519934	ENST00000336273		ChiTaRS3.1			AA171915	MTDH	chr8	98735263	+	MTDH	chr8	98703180	+
In-frame	ENST00000519934	ENST00000519934		ChiTaRS3.1			AA171915	MTDH	chr8	98735263	+	MTDH	chr8	98703180	+
intron-3CDS	ENST00000394609	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394609		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000405240		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357376		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000317610		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357732		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000337526		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394611		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000404909		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000486085		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000354474		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000402434		ChiTaRS3.1			AA180924	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000265069	ENST00000265069		ChiTaRS3.1			AA181535	ZFR	chr5	32355996	+	ZFR	chr5	32355974	-
intron-5UTR	ENST00000265069	ENST00000510369		ChiTaRS3.1			AA181535	ZFR	chr5	32355996	+	ZFR	chr5	32355974	-
intron-3CDS	ENST00000510369	ENST00000265069		ChiTaRS3.1			AA181535	ZFR	chr5	32355996	+	ZFR	chr5	32355974	-
intron-5UTR	ENST00000510369	ENST00000510369		ChiTaRS3.1			AA181535	ZFR	chr5	32355996	+	ZFR	chr5	32355974	-
intron-3UTR	ENST00000537532	ENST00000316881		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
intron-intron	ENST00000537532	ENST00000573108		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
intron-intron	ENST00000537532	ENST00000537230		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-3UTR	ENST00000539644	ENST00000316881		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000539644	ENST00000573108		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000539644	ENST00000537230		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-3UTR	ENST00000392404	ENST00000316881		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000392404	ENST00000573108		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000392404	ENST00000537230		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-3UTR	ENST00000538932	ENST00000316881		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000538932	ENST00000573108		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000538932	ENST00000537230		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-3UTR	ENST00000337815	ENST00000316881		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000337815	ENST00000573108		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
5UTR-intron	ENST00000337815	ENST00000537230		ChiTaRS3.1			AA189065	ZNF664	chr12	124496396	+	TRIM25	chr17	54965999	+
intron-3UTR	ENST00000408742	ENST00000238823		ChiTaRS3.1			AA197045	MIR548N	chr2	179397925	+	FAM98A	chr2	33808822	-
intron-3UTR	ENST00000408742	ENST00000403368		ChiTaRS3.1			AA197045	MIR548N	chr2	179397925	+	FAM98A	chr2	33808822	-
intron-intron	ENST00000408742	ENST00000441530		ChiTaRS3.1			AA197045	MIR548N	chr2	179397925	+	FAM98A	chr2	33808822	-
intron-intron	ENST00000408742	ENST00000498340		ChiTaRS3.1			AA197045	MIR548N	chr2	179397925	+	FAM98A	chr2	33808822	-
3UTR-3UTR	ENST00000348035	ENST00000348035		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
3UTR-intron	ENST00000348035	ENST00000356142		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
3UTR-intron	ENST00000348035	ENST00000488373		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-3UTR	ENST00000356142	ENST00000348035		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-intron	ENST00000356142	ENST00000356142		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-intron	ENST00000356142	ENST00000488373		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-3UTR	ENST00000488373	ENST00000348035		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-intron	ENST00000488373	ENST00000356142		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-intron	ENST00000488373	ENST00000488373		ChiTaRS3.1			AA205195	RAC1	chr7	6443252	-	RAC1	chr7	6443438	+
intron-intron	ENST00000361204	ENST00000361204		ChiTaRS3.1			AA214205	SREBF2	chr22	42327498	-	SREBF2	chr22	42327609	+
intron-intron	ENST00000361204	ENST00000491541		ChiTaRS3.1			AA214205	SREBF2	chr22	42327498	-	SREBF2	chr22	42327609	+
intron-intron	ENST00000491541	ENST00000361204		ChiTaRS3.1			AA214205	SREBF2	chr22	42327498	-	SREBF2	chr22	42327609	+
intron-intron	ENST00000491541	ENST00000491541		ChiTaRS3.1			AA214205	SREBF2	chr22	42327498	-	SREBF2	chr22	42327609	+
3UTR-intron	ENST00000223061	ENST00000223061		ChiTaRS3.1			AA226265	PCOLCE	chr7	100205770	+	PCOLCE	chr7	100205430	-
3UTR-intron	ENST00000223061	ENST00000496269		ChiTaRS3.1			AA226265	PCOLCE	chr7	100205770	+	PCOLCE	chr7	100205430	-
intron-intron	ENST00000496269	ENST00000223061		ChiTaRS3.1			AA226265	PCOLCE	chr7	100205770	+	PCOLCE	chr7	100205430	-
intron-intron	ENST00000496269	ENST00000496269		ChiTaRS3.1			AA226265	PCOLCE	chr7	100205770	+	PCOLCE	chr7	100205430	-
intron-3UTR	ENST00000348520	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000348520	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000348520	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000348520	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000380038	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000380038	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000380038	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000380038	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000389744	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000389744	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000389744	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000389744	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000557575	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000557575	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000557575	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000557575	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000553286	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000553286	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000553286	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000553286	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000347839	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000347839	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000347839	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000347839	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000555836	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000555836	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000555836	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000555836	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000334553	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000334553	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000334553	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000334553	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000246489	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000246489	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000246489	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000246489	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000557450	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000557450	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000557450	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000557450	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000554280	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000554280	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000554280	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000554280	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000452929	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000452929	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000452929	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000452929	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000445352	ENST00000409074		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000445352	ENST00000556253		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000445352	ENST00000247618		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-intron	ENST00000445352	ENST00000477116		ChiTaRS3.1			AA227534	KLC1	chr14	104060247	+	APOPT1	chr14	104057084	+
intron-3UTR	ENST00000370580	ENST00000540080		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000433436		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000538225		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000345519		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000470744		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000242285		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-intron	ENST00000370580	ENST00000466396		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-3UTR	ENST00000370580	ENST00000396603		ChiTaRS3.1			AA227674	BCL10	chr1	85732413	+	CLTA	chr9	36211963	+
intron-intron	ENST00000324331	ENST00000324331		ChiTaRS3.1			AA230275	FARS2	chr6	5467002	+	FARS2	chr6	5466803	-
intron-intron	ENST00000324331	ENST00000274680		ChiTaRS3.1			AA230275	FARS2	chr6	5467002	+	FARS2	chr6	5466803	-
intron-intron	ENST00000274680	ENST00000324331		ChiTaRS3.1			AA230275	FARS2	chr6	5467002	+	FARS2	chr6	5466803	-
intron-intron	ENST00000274680	ENST00000274680		ChiTaRS3.1			AA230275	FARS2	chr6	5467002	+	FARS2	chr6	5466803	-
intron-intron	ENST00000303538	ENST00000369252		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000533213		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000277895		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000369266		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000392952		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000369253		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000303538	ENST00000477638		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000369252		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000533213		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000277895		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000369266		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000392952		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000369253		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-intron	ENST00000503396	ENST00000477638		ChiTaRS3.1			AA243665	PDS5A	chr4	39861179	-	ABLIM1	chr10	116198044	-
intron-3CDS	ENST00000269554	ENST00000269554		ChiTaRS3.1			AA247774	PIP4K2B	chr17	36922170	-	PIP4K2B	chr17	36940572	-
intron-5UTR	ENST00000269554	ENST00000311500		ChiTaRS3.1			AA247774	PIP4K2B	chr17	36922170	-	PIP4K2B	chr17	36940572	-
intron-3CDS	ENST00000311500	ENST00000269554		ChiTaRS3.1			AA247774	PIP4K2B	chr17	36922170	-	PIP4K2B	chr17	36940572	-
intron-5UTR	ENST00000311500	ENST00000311500		ChiTaRS3.1			AA247774	PIP4K2B	chr17	36922170	-	PIP4K2B	chr17	36940572	-
intron-intron	ENST00000396193	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396193	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396193	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000396193	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396193	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396193	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396191	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396191	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396191	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000396191	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396191	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396191	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000321453	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000321453	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000321453	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000321453	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000321453	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000321453	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396184	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396184	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396184	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000396184	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396184	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396184	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000479980	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000479980	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000479980	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000479980	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000479980	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000479980	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396182	ENST00000396193		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396182	ENST00000396191		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396182	ENST00000321453		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-3UTR	ENST00000396182	ENST00000396184		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396182	ENST00000479980		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000396182	ENST00000396182		ChiTaRS3.1			AA247844	PDE1C	chr7	31825611	-	PDE1C	chr7	31829617	-
intron-intron	ENST00000544071	ENST00000544071		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-3UTR	ENST00000544071	ENST00000371933		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-intron	ENST00000544071	ENST00000484461		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-intron	ENST00000371933	ENST00000544071		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-3UTR	ENST00000371933	ENST00000371933		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-intron	ENST00000371933	ENST00000484461		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-intron	ENST00000484461	ENST00000544071		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-3UTR	ENST00000484461	ENST00000371933		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-intron	ENST00000484461	ENST00000484461		ChiTaRS3.1			AA252565	EFCAB14	chr1	47142118	+	EFCAB14	chr1	47142091	-
intron-3UTR	ENST00000261182	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000261182	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000393263	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000393263	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000431879	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000431879	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000547773	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547773	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000544816	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000544816	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000542344	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000542344	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000535020	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000535020	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000549596	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000549596	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000547993	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000547993	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000552342	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000552342	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000548044	ENST00000261182		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000393263		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000431879		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000547773		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000544816		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000542344		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000535020		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000549596		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000547993		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000552342		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-intron	ENST00000548044	ENST00000548044		ChiTaRS3.1			AA256334	NAP1L1	chr12	76441330	+	NAP1L1	chr12	76440774	+
intron-3UTR	ENST00000357613	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000357613	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000357613	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000357613	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000357613	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000357613	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-3UTR	ENST00000569540	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569540	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569540	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569540	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569540	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569540	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-3UTR	ENST00000561878	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000561878	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000561878	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000561878	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000561878	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000561878	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-3UTR	ENST00000567796	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000567796	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000567796	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000567796	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000567796	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000567796	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-3UTR	ENST00000566980	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000566980	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000566980	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000566980	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000566980	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000566980	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-3UTR	ENST00000569276	ENST00000357613		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569276	ENST00000569540		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569276	ENST00000561878		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569276	ENST00000567796		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569276	ENST00000566980		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000569276	ENST00000569276		ChiTaRS3.1			AA259184	TMEM170A	chr16	75479808	+	TMEM170A	chr16	75479503	+
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			AA262084	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			AA262125	CD74	chr5	149781727	+	CD74	chr5	149781467	-
intron-3CDS	ENST00000330574	ENST00000330574		ChiTaRS3.1			AA262395	INTS5	chr11	62414418	+	INTS5	chr11	62414798	-
3UTR-3UTR	ENST00000373218	ENST00000373218		ChiTaRS3.1			AA278954	EIF4EBP2	chr10	72187809	+	EIF4EBP2	chr10	72187684	-
intron-3CDS	ENST00000265000	ENST00000333957		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000446597		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000536386		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000396028		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000542676		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000544930		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000545552		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000265000	ENST00000540703		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000333957		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000446597		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000536386		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000396028		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000542676		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000544930		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000545552		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000512285	ENST00000540703		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000333957		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000446597		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000536386		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000396028		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000542676		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000544930		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000545552		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000502407	ENST00000540703		ChiTaRS3.1			AA279214	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-intron	ENST00000380647	ENST00000380647		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000262360		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000425824		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380647	ENST00000380641		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000380647	ENST00000484374		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000380647		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000262360		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000425824		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000262360	ENST00000380641		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000262360	ENST00000484374		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000380647		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000262360		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000425824		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000425824	ENST00000380641		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000425824	ENST00000484374		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000380647		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000262360		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000425824		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000380641	ENST00000380641		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000380641	ENST00000484374		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000380647		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000262360		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000425824		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-intron	ENST00000484374	ENST00000380641		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
intron-3UTR	ENST00000484374	ENST00000484374		ChiTaRS3.1			AA280904	CNTLN	chr9	17168620	+	CNTLN	chr9	17167501	+
3UTR-3CDS	ENST00000522793	ENST00000522793		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
3UTR-3CDS	ENST00000522793	ENST00000231238		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
3UTR-3UTR	ENST00000522793	ENST00000520274		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
3UTR-3CDS	ENST00000231238	ENST00000522793		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
3UTR-3CDS	ENST00000231238	ENST00000231238		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
3UTR-3UTR	ENST00000231238	ENST00000520274		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
intron-3CDS	ENST00000520274	ENST00000522793		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
intron-3CDS	ENST00000520274	ENST00000231238		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
intron-3UTR	ENST00000520274	ENST00000520274		ChiTaRS3.1			AA288024	TTC1	chr5	159492443	-	TTC1	chr5	159476638	+
intron-3CDS	ENST00000316403	ENST00000316403		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000316403	ENST00000546343		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000316403	ENST00000560366		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000316403	ENST00000405140		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000316403	ENST00000523500		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000546343	ENST00000316403		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000546343	ENST00000546343		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000546343	ENST00000560366		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000546343	ENST00000405140		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000546343	ENST00000523500		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000560366	ENST00000316403		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000560366	ENST00000546343		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000560366	ENST00000560366		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000560366	ENST00000405140		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000560366	ENST00000523500		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000405140	ENST00000316403		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000405140	ENST00000546343		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000405140	ENST00000560366		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000405140	ENST00000405140		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000405140	ENST00000523500		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000523500	ENST00000316403		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000523500	ENST00000546343		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000523500	ENST00000560366		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000523500	ENST00000405140		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-3CDS	ENST00000523500	ENST00000523500		ChiTaRS3.1			AA291054	CLU	chr8	27455762	+	CLU	chr8	27462623	-
intron-intron	ENST00000369408	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000369408	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000520886	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000520886	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000339746	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000339746	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000447838	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000447838	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000522441	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000522441	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000485637	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000485637	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000520793	ENST00000348165		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
intron-intron	ENST00000520793	ENST00000389103		ChiTaRS3.1			AA295305	ANKRD6	chr6	90171638	+	UBE3C	chr7	156950887	+
Frame-shit	ENST00000448507	ENST00000448507		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000448507	ENST00000409757		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000448507	ENST00000410031		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000448507	ENST00000451522		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000448507	ENST00000446947		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000409757	ENST00000448507		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000409757	ENST00000409757		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000409757	ENST00000410031		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000409757	ENST00000451522		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000409757	ENST00000446947		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000410031	ENST00000448507		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000410031	ENST00000409757		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000410031	ENST00000410031		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000410031	ENST00000451522		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000410031	ENST00000446947		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000451522	ENST00000448507		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000451522	ENST00000409757		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000451522	ENST00000410031		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000451522	ENST00000451522		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000451522	ENST00000446947		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000446947	ENST00000448507		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000446947	ENST00000409757		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000446947	ENST00000410031		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000446947	ENST00000451522		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
Frame-shit	ENST00000446947	ENST00000446947		ChiTaRS3.1			AA300225	TBC1D14	chr4	7012481	+	TBC1D14	chr4	7008445	-
intron-3UTR	ENST00000306357	ENST00000560302		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000306357	ENST00000394518		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000306357	ENST00000361243		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000306357	ENST00000560579		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000306357	ENST00000394510		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-3UTR	ENST00000574431	ENST00000560302		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000574431	ENST00000394518		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000574431	ENST00000361243		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000574431	ENST00000560579		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000574431	ENST00000394510		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-3UTR	ENST00000573373	ENST00000560302		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000573373	ENST00000394518		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000573373	ENST00000361243		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000573373	ENST00000560579		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000573373	ENST00000394510		ChiTaRS3.1			AA304655	STX8	chr17	9460767	-	AKAP13	chr15	86079244	+
intron-intron	ENST00000453304	ENST00000453304		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000453304	ENST00000506749		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000453304	ENST00000504962		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000506749	ENST00000453304		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000506749	ENST00000506749		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000506749	ENST00000504962		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000504962	ENST00000453304		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000504962	ENST00000506749		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
intron-intron	ENST00000504962	ENST00000504962		ChiTaRS3.1			AA319525	UNC5C	chr4	96366346	-	UNC5C	chr4	96368571	-
Frame-shit	ENST00000377107	ENST00000377107		ChiTaRS3.1			AA322974	USP11	chrX	47107298	-	USP11	chrX	47104451	+
Frame-shit	ENST00000377107	ENST00000218348		ChiTaRS3.1			AA322974	USP11	chrX	47107298	-	USP11	chrX	47104451	+
In-frame	ENST00000218348	ENST00000377107		ChiTaRS3.1			AA322974	USP11	chrX	47107298	-	USP11	chrX	47104451	+
In-frame	ENST00000218348	ENST00000218348		ChiTaRS3.1			AA322974	USP11	chrX	47107298	-	USP11	chrX	47104451	+
intron-intron	ENST00000380308	ENST00000361727		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000380308	ENST00000538075		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000380308	ENST00000463592		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000307771	ENST00000361727		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000307771	ENST00000538075		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000307771	ENST00000463592		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000468028	ENST00000361727		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000468028	ENST00000538075		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000468028	ENST00000463592		ChiTaRS3.1			AA323715	ZRSR2	chrX	15809288	+	CNTNAP2	chr7	146162230	+
intron-intron	ENST00000369219	ENST00000176763		ChiTaRS3.1			AA328334	NBPF14	chr1	145274046	+	STK10	chr5	171513273	-
intron-intron	ENST00000369219	ENST00000517775		ChiTaRS3.1			AA328334	NBPF14	chr1	145274046	+	STK10	chr5	171513273	-
intron-intron	ENST00000368491	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000259371		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000408936		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000309989		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000487716		ChiTaRS3.1			AA329915	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000233027	ENST00000309424		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
intron-intron	ENST00000233027	ENST00000589804		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
intron-intron	ENST00000535191	ENST00000309424		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
intron-intron	ENST00000535191	ENST00000589804		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
intron-intron	ENST00000383721	ENST00000309424		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
intron-intron	ENST00000383721	ENST00000589804		ChiTaRS3.1			AA335265	NEK4	chr3	52776059	-	CD3EAP	chr19	45911082	-
3UTR-3UTR	ENST00000429989	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000429989	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000429989	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000429989	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000429989	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000429989	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000429989	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000481124	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000481124	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000481124	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000481124	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000481124	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000481124	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000481124	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000372164	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000372164	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000372164	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000372164	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000372164	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000372164	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000372164	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372158	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372158	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372158	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372158	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372158	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372158	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372158	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000341863	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000341863	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000341863	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000341863	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000341863	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000341863	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000341863	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372156	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372156	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372156	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372156	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372156	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000372156	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-3UTR	ENST00000372156	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000265450	ENST00000429989		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000265450	ENST00000481124		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000265450	ENST00000372164		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000265450	ENST00000372158		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000265450	ENST00000341863		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-intron	ENST00000265450	ENST00000372156		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
3UTR-3UTR	ENST00000265450	ENST00000265450		ChiTaRS3.1			AA343945	TSPAN14	chr10	82278647	+	TSPAN14	chr10	82278428	+
intron-intron	ENST00000455089	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000455089	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000342916	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000344576	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000420316	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000275493	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000442591	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000463948	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000455089		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000342916		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000344576		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000420316		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000275493		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000442591		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000463948		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000454757	ENST00000454757		ChiTaRS3.1			AA344434	EGFR	chr7	55167327	-	EGFR	chr7	55167411	+
intron-intron	ENST00000373602	ENST00000367328		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
intron-intron	ENST00000373602	ENST00000358517		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
3UTR-intron	ENST00000421922	ENST00000367328		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
3UTR-intron	ENST00000421922	ENST00000358517		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
intron-intron	ENST00000483009	ENST00000367328		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
intron-intron	ENST00000483009	ENST00000358517		ChiTaRS3.1			AA344455	CCDC28B	chr1	32670632	-	PLEKHG1	chr6	151003671	+
intron-intron	ENST00000582151	ENST00000582151		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000582151	ENST00000250124		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000582151	ENST00000396501		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000582151	ENST00000423172		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000250124	ENST00000582151		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000250124	ENST00000250124		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000250124	ENST00000396501		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000250124	ENST00000423172		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000396501	ENST00000582151		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000396501	ENST00000250124		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000396501	ENST00000396501		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000396501	ENST00000423172		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000423172	ENST00000582151		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000423172	ENST00000250124		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000423172	ENST00000396501		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
intron-intron	ENST00000423172	ENST00000423172		ChiTaRS3.1			AA346855	MPDU1	chr17	7494290	+	MPDU1	chr17	7493883	+
5CDS-5UTR	ENST00000355680	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000355680	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000355680	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397638	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397638	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397638	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000291705	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000291705	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000291705	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000458387	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000458387	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000458387	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000451211	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000451211	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000451211	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397637	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397637	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397637	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000334494	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000334494	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000334494	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397628	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000397628	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000397628	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000440086	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-5UTR	ENST00000440086	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
5CDS-intron	ENST00000440086	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-5UTR	ENST00000491389	ENST00000355680		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000397638		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000291705		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000458387		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000451211		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-5UTR	ENST00000491389	ENST00000397637		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000334494		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000397628		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000440086		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
3UTR-intron	ENST00000491389	ENST00000491389		ChiTaRS3.1			AA348224	PRMT2	chr21	48069583	+	PRMT2	chr21	48056396	+
intron-3CDS	ENST00000241041	ENST00000241041		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000241041	ENST00000378750		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-5UTR	ENST00000241041	ENST00000532681		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-intron	ENST00000241041	ENST00000532554		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000378750	ENST00000241041		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000378750	ENST00000378750		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-5UTR	ENST00000378750	ENST00000532681		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-intron	ENST00000378750	ENST00000532554		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000532681	ENST00000241041		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000532681	ENST00000378750		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-5UTR	ENST00000532681	ENST00000532681		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-intron	ENST00000532681	ENST00000532554		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000532554	ENST00000241041		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-3CDS	ENST00000532554	ENST00000378750		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-5UTR	ENST00000532554	ENST00000532681		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-intron	ENST00000532554	ENST00000532554		ChiTaRS3.1			AA357684	PEX16	chr11	45939367	+	PEX16	chr11	45937838	-
intron-intron	ENST00000452313	ENST00000249700		ChiTaRS3.1			AA367625	NPIPB7	chr16	29167965	+	TMOD2	chr15	52060023	-
intron-intron	ENST00000452313	ENST00000539962		ChiTaRS3.1			AA367625	NPIPB7	chr16	29167965	+	TMOD2	chr15	52060023	-
intron-intron	ENST00000452313	ENST00000435126		ChiTaRS3.1			AA367625	NPIPB7	chr16	29167965	+	TMOD2	chr15	52060023	-
intron-intron	ENST00000520931	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000520931	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000389378	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000389378	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000523338	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000523338	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000315050	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000315050	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000522226	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000522226	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000518977	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000518977	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000521591	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000521591	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000524280	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000524280	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000523200	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000523200	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-intron	ENST00000521423	ENST00000437232		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-5UTR	ENST00000521423	ENST00000605833		ChiTaRS3.1			AA368174	TNIP1	chr5	150409573	+	VIM-AS1	chr10	17271771	+
intron-3UTR	ENST00000225964	ENST00000237853		ChiTaRS3.1			AA368274	COL1A1	chr17	48261921	+	ELL2	chr5	95221540	-
intron-intron	ENST00000225964	ENST00000431061		ChiTaRS3.1			AA368274	COL1A1	chr17	48261921	+	ELL2	chr5	95221540	-
intron-intron	ENST00000225964	ENST00000506628		ChiTaRS3.1			AA368274	COL1A1	chr17	48261921	+	ELL2	chr5	95221540	-
intron-3CDS	ENST00000329957	ENST00000426496		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-3CDS	ENST00000329957	ENST00000392078		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000329957	ENST00000476522		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000329957	ENST00000367742		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000329957	ENST00000338920		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-3CDS	ENST00000526462	ENST00000426496		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-3CDS	ENST00000526462	ENST00000392078		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000526462	ENST00000476522		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000526462	ENST00000367742		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
intron-intron	ENST00000526462	ENST00000338920		ChiTaRS3.1			AA368515	MOB2	chr11	1775287	-	PRRC2C	chr1	171505186	-
5CDS-3UTR	ENST00000356554	ENST00000322764		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
5CDS-3UTR	ENST00000356554	ENST00000449423		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
5CDS-3UTR	ENST00000356554	ENST00000392910		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
5CDS-intron	ENST00000356554	ENST00000477373		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
3UTR-3UTR	ENST00000482811	ENST00000322764		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
3UTR-3UTR	ENST00000482811	ENST00000449423		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
3UTR-3UTR	ENST00000482811	ENST00000392910		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
3UTR-intron	ENST00000482811	ENST00000477373		ChiTaRS3.1			AA368655	MAN1A2	chr1	117910980	-	ZYX	chr7	143087867	-
intron-3CDS	ENST00000585421	ENST00000261937		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000585421	ENST00000393347		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000585421	ENST00000502649		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-5UTR	ENST00000585421	ENST00000424276		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000536189	ENST00000261937		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000536189	ENST00000393347		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000536189	ENST00000502649		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-5UTR	ENST00000536189	ENST00000424276		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000262768	ENST00000261937		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000262768	ENST00000393347		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000262768	ENST00000502649		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-5UTR	ENST00000262768	ENST00000424276		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000586057	ENST00000261937		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000586057	ENST00000393347		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-3CDS	ENST00000586057	ENST00000502649		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
intron-5UTR	ENST00000586057	ENST00000424276		ChiTaRS3.1			AA368924	TIMP2	chr17	76849995	+	FLT4	chr5	180052936	+
3UTR-3CDS	ENST00000374259	ENST00000374259		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
3UTR-intron	ENST00000374259	ENST00000466874		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
3UTR-intron	ENST00000374259	ENST00000341558		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-3CDS	ENST00000466874	ENST00000374259		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-intron	ENST00000466874	ENST00000466874		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-intron	ENST00000466874	ENST00000341558		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-3CDS	ENST00000341558	ENST00000374259		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-intron	ENST00000341558	ENST00000466874		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
intron-intron	ENST00000341558	ENST00000341558		ChiTaRS3.1			AA368925	FOXO4	chrX	70323323	-	FOXO4	chrX	70320758	+
Frame-shit	ENST00000254722	ENST00000254722		ChiTaRS3.1			AA377954	SERPINF1	chr17	1680555	-	SERPINF1	chr17	1680635	+
5CDS-intron	ENST00000254722	ENST00000571870		ChiTaRS3.1			AA377954	SERPINF1	chr17	1680555	-	SERPINF1	chr17	1680635	+
intron-3CDS	ENST00000571870	ENST00000254722		ChiTaRS3.1			AA377954	SERPINF1	chr17	1680555	-	SERPINF1	chr17	1680635	+
intron-intron	ENST00000571870	ENST00000571870		ChiTaRS3.1			AA377954	SERPINF1	chr17	1680555	-	SERPINF1	chr17	1680635	+
intron-3CDS	ENST00000534062	ENST00000356654		ChiTaRS3.1			AA378254	RTL1	chr14	101347599	+	ATN1	chr12	7045930	+
intron-3CDS	ENST00000534062	ENST00000396684		ChiTaRS3.1			AA378254	RTL1	chr14	101347599	+	ATN1	chr12	7045930	+
intron-intron	ENST00000513454	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000513454	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000311337	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000458112	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000500692	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000508177	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000503794	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000394413		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000530902		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000508545		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000394414		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000394411		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000453001		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000356826		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000394410		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000336640		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000504198		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-intron	ENST00000542860	ENST00000394409		ChiTaRS3.1			AA383455	GNPDA1	chr5	141380644	+	PPP2R2B	chr5	146299131	-
intron-5UTR	ENST00000373237	ENST00000373237		ChiTaRS3.1			AA393815	PSMB2	chr1	36068559	-	PSMB2	chr1	36107120	-
intron-3CDS	ENST00000483017	ENST00000394289		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
intron-3CDS	ENST00000483017	ENST00000260753		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
intron-3CDS	ENST00000483017	ENST00000416354		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
intron-3CDS	ENST00000483017	ENST00000371728		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
intron-3UTR	ENST00000483017	ENST00000478929		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000329146	ENST00000394289		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000329146	ENST00000260753		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000329146	ENST00000416354		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000329146	ENST00000371728		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3UTR	ENST00000329146	ENST00000478929		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000548989	ENST00000394289		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000548989	ENST00000260753		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000548989	ENST00000416354		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3CDS	ENST00000548989	ENST00000371728		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
3UTR-3UTR	ENST00000548989	ENST00000478929		ChiTaRS3.1			AA402625	CRIP2	chr14	105946330	-	KIF20B	chr10	91497913	+
intron-3CDS	ENST00000370339	ENST00000370339		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370339	ENST00000370334		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370339	ENST00000370333		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-3CDS	ENST00000370334	ENST00000370339		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370334	ENST00000370334		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370334	ENST00000370333		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-3CDS	ENST00000370333	ENST00000370339		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370333	ENST00000370334		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-intron	ENST00000370333	ENST00000370333		ChiTaRS3.1			AA405604	YTHDF1	chr20	61834469	-	YTHDF1	chr20	61834962	-
intron-3UTR	ENST00000405409	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000414461	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000449924	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000262829	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000397303	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000359369	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000416721	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000438146	ENST00000405409		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000414461		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000449924		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000262829		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000397303		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000359369		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000416721		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000438146		ChiTaRS3.1			AA417914	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
5CDS-3UTR	ENST00000442366	ENST00000356978		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000442366	ENST00000447653		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000442366	ENST00000555132		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000442366	ENST00000553542		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000442366	ENST00000544280		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-3UTR	ENST00000358008	ENST00000356978		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000358008	ENST00000447653		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000358008	ENST00000555132		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000358008	ENST00000553542		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000358008	ENST00000544280		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-3UTR	ENST00000394701	ENST00000356978		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000394701	ENST00000447653		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000394701	ENST00000555132		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000394701	ENST00000553542		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
5CDS-intron	ENST00000394701	ENST00000544280		ChiTaRS3.1			AA421615	AIMP1	chr4	107268733	-	CALM1	chr14	90871714	+
intron-intron	ENST00000474820	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000474820	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000348849	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409075	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409289	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000392753	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000505350		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000457016		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000257430		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
intron-intron	ENST00000409972	ENST00000508376		ChiTaRS3.1			AA421934	RBMS1	chr2	161223859	-	APC	chr5	112178709	+
5CDS-intron	ENST00000310624	ENST00000310624		ChiTaRS3.1			AA425515	NEFH	chr22	29886097	+	NEFH	chr22	29877341	+
intron-3UTR	ENST00000339697	ENST00000335742		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
intron-3UTR	ENST00000339697	ENST00000261509		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
intron-intron	ENST00000339697	ENST00000505667		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
intron-intron	ENST00000339697	ENST00000333488		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
intron-intron	ENST00000339697	ENST00000512127		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
intron-3UTR	ENST00000339697	ENST00000507735		ChiTaRS3.1			AA425614	SERINC1	chr6	122765520	-	PALLD	chr4	169847900	+
3UTR-3UTR	ENST00000375759	ENST00000375759		ChiTaRS3.1			AA426315	SPEN	chr1	16266262	-	SPEN	chr1	16266318	+
3UTR-intron	ENST00000375759	ENST00000471538		ChiTaRS3.1			AA426315	SPEN	chr1	16266262	-	SPEN	chr1	16266318	+
intron-3UTR	ENST00000471538	ENST00000375759		ChiTaRS3.1			AA426315	SPEN	chr1	16266262	-	SPEN	chr1	16266318	+
intron-intron	ENST00000471538	ENST00000471538		ChiTaRS3.1			AA426315	SPEN	chr1	16266262	-	SPEN	chr1	16266318	+
intron-intron	ENST00000264080	ENST00000592685		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000264080	ENST00000380702		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000264080	ENST00000352831		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000264080	ENST00000293683		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000264080	ENST00000440014		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000264080	ENST00000344979		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000598626	ENST00000592685		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000598626	ENST00000380702		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000598626	ENST00000352831		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000598626	ENST00000293683		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000598626	ENST00000440014		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000598626	ENST00000344979		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000430424	ENST00000592685		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000430424	ENST00000380702		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000430424	ENST00000352831		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000430424	ENST00000293683		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-intron	ENST00000430424	ENST00000440014		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
intron-3UTR	ENST00000430424	ENST00000344979		ChiTaRS3.1			AA432285	GPR108	chr19	6733130	-	PDE4A	chr19	10578350	+
In-frame	ENST00000435070	ENST00000435070		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000435070	ENST00000456847		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000435070	ENST00000266679		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000435070	ENST00000550987		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000435070	ENST00000551516		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000456847	ENST00000435070		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000456847	ENST00000456847		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000456847	ENST00000266679		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000456847	ENST00000550987		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000456847	ENST00000551516		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000266679	ENST00000435070		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000266679	ENST00000456847		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
In-frame	ENST00000266679	ENST00000266679		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000266679	ENST00000550987		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
5CDS-intron	ENST00000266679	ENST00000551516		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000550987	ENST00000435070		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000550987	ENST00000456847		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000550987	ENST00000266679		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-intron	ENST00000550987	ENST00000550987		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-intron	ENST00000550987	ENST00000551516		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000551516	ENST00000435070		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000551516	ENST00000456847		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-3CDS	ENST00000551516	ENST00000266679		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-intron	ENST00000551516	ENST00000550987		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-intron	ENST00000551516	ENST00000551516		ChiTaRS3.1			AA442135	CPSF6	chr12	69653264	-	CPSF6	chr12	69653862	+
intron-intron	ENST00000472943	ENST00000339861		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000420987		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000455551		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000343780		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000450295		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000438547		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000356444		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000422704		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000420101		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
intron-intron	ENST00000472943	ENST00000469653		ChiTaRS3.1			AA442974	LINC00886	chr3	156527598	-	SEMA4D	chr9	92065405	-
5CDS-intron	ENST00000258975	ENST00000258975		ChiTaRS3.1			AA447355	TACO1	chr17	61683681	+	TACO1	chr17	61682400	+
intron-3UTR	ENST00000435532	ENST00000341189		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000435532	ENST00000471229		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000435532	ENST00000477980		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000435532	ENST00000537169		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000338963	ENST00000341189		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000338963	ENST00000471229		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000338963	ENST00000477980		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000338963	ENST00000537169		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508342	ENST00000341189		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508342	ENST00000471229		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000508342	ENST00000477980		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508342	ENST00000537169		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000506154	ENST00000341189		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000506154	ENST00000471229		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000506154	ENST00000477980		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000506154	ENST00000537169		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508075	ENST00000341189		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508075	ENST00000471229		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000508075	ENST00000477980		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-3UTR	ENST00000508075	ENST00000537169		ChiTaRS3.1			AA449165	NEDD4	chr15	56195177	-	ARMCX3	chrX	100881405	+
intron-intron	ENST00000395131	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000395131	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000395131	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374606	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374606	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374606	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374610	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374610	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374610	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374607	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374607	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000374607	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000463584	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000463584	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000463584	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000445559	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000445559	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000445559	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000452658	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000452658	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000452658	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000448594	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000448594	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000448594	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547952	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547952	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547952	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000491095	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000491095	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000491095	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000412289	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000412289	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000412289	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000425878	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000425878	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000425878	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000442285	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000442285	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000442285	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000552711	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000552711	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000552711	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000474406	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000474406	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000474406	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000431830	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000431830	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000431830	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000432391	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000432391	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000432391	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000451970	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000451970	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000451970	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547641	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547641	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000547641	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000468094	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000468094	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000468094	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399385	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399385	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399385	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399383	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399383	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000399383	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
5CDS-intron	ENST00000383207	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
5CDS-intron	ENST00000383207	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
5CDS-intron	ENST00000383207	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000548040	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000548040	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
3UTR-intron	ENST00000548040	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000482292	ENST00000276893		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000482292	ENST00000381373		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000482292	ENST00000485617		ChiTaRS3.1			AA449365	PFDN6	chr6	4490881	-	UHRF2	chr9	6481767	-
intron-intron	ENST00000321556	ENST00000321556		ChiTaRS3.1			AA449854	PINK1	chr1	20974731	-	PINK1	chr1	20976010	-
intron-intron	ENST00000321556	ENST00000492302		ChiTaRS3.1			AA449854	PINK1	chr1	20974731	-	PINK1	chr1	20976010	-
intron-intron	ENST00000492302	ENST00000321556		ChiTaRS3.1			AA449854	PINK1	chr1	20974731	-	PINK1	chr1	20976010	-
intron-intron	ENST00000492302	ENST00000492302		ChiTaRS3.1			AA449854	PINK1	chr1	20974731	-	PINK1	chr1	20976010	-
intron-3CDS	ENST00000391976	ENST00000401695		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000391976	ENST00000407193		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000391976	ENST00000312037		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000310931	ENST00000401695		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000310931	ENST00000407193		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000310931	ENST00000312037		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000391975	ENST00000401695		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000391975	ENST00000407193		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000391975	ENST00000312037		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000427183	ENST00000401695		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000427183	ENST00000407193		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000427183	ENST00000312037		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000476807	ENST00000401695		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000476807	ENST00000407193		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-3CDS	ENST00000476807	ENST00000312037		ChiTaRS3.1			AA450315	HDLBP	chr2	242176108	-	RPS14	chr5	149823912	-
intron-intron	ENST00000446488	ENST00000446488		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000446488	ENST00000304521		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000446488	ENST00000524794		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000446488	ENST00000524746		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000446488	ENST00000526940		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000304521	ENST00000446488		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000304521	ENST00000304521		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000304521	ENST00000524794		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000304521	ENST00000524746		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000304521	ENST00000526940		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524794	ENST00000446488		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524794	ENST00000304521		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524794	ENST00000524794		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524794	ENST00000524746		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524794	ENST00000526940		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524746	ENST00000446488		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524746	ENST00000304521		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524746	ENST00000524794		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524746	ENST00000524746		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000524746	ENST00000526940		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000526940	ENST00000446488		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000526940	ENST00000304521		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000526940	ENST00000524794		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000526940	ENST00000524746		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000526940	ENST00000526940		ChiTaRS3.1			AA456494	NFRKB	chr11	129737606	-	NFRKB	chr11	129738675	-
intron-intron	ENST00000431446	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000431446	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000496459	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000570135	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000320676	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000562646	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000431446		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000496459		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000570135		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000320676		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000562646		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000565438	ENST00000565438		ChiTaRS3.1			AA460375	RBMX	chrX	135955136	-	RBMX	chrX	135955243	+
intron-intron	ENST00000439155	ENST00000360768		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000439155	ENST00000434382		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000367429	ENST00000360768		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000367429	ENST00000434382		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000496761	ENST00000360768		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000496761	ENST00000434382		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000359637	ENST00000360768		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000359637	ENST00000434382		ChiTaRS3.1			AA461475	CFH	chr1	196657989	-	VKORC1L1	chr7	65378453	-
intron-intron	ENST00000516892	ENST00000438447		ChiTaRS3.1			AA463835	MEG3	chr14	101298752	+	PDZD2	chr5	31918427	+
intron-intron	ENST00000516892	ENST00000282493		ChiTaRS3.1			AA463835	MEG3	chr14	101298752	+	PDZD2	chr5	31918427	+
intron-intron	ENST00000516892	ENST00000513490		ChiTaRS3.1			AA463835	MEG3	chr14	101298752	+	PDZD2	chr5	31918427	+
intron-3UTR	ENST00000307102	ENST00000007708		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
intron-3UTR	ENST00000307102	ENST00000503176		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
intron-intron	ENST00000307102	ENST00000511026		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
intron-3UTR	ENST00000566326	ENST00000007708		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
intron-3UTR	ENST00000566326	ENST00000503176		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
intron-intron	ENST00000566326	ENST00000511026		ChiTaRS3.1			AA478915	MAP2K1	chr15	66699661	+	PDK2	chr17	48188189	+
3UTR-3UTR	ENST00000319441	ENST00000319441		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000543666		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000535860		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000543666	ENST00000319441		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000543666		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000535860		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000535860	ENST00000319441		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000543666		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000535860		ChiTaRS3.1			AA484525	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-3UTR	ENST00000468643	ENST00000468643		ChiTaRS3.1			AA484725	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000468643	ENST00000400577		ChiTaRS3.1			AA484725	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000468643		ChiTaRS3.1			AA484725	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000400577		ChiTaRS3.1			AA484725	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
intron-3UTR	ENST00000309964	ENST00000309964		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000309964	ENST00000381322		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000309964	ENST00000513440		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000309964	ENST00000506923		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-3UTR	ENST00000381322	ENST00000309964		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000381322	ENST00000381322		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000381322	ENST00000513440		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000381322	ENST00000506923		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-3UTR	ENST00000513440	ENST00000309964		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000513440	ENST00000381322		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000513440	ENST00000513440		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000513440	ENST00000506923		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-3UTR	ENST00000506923	ENST00000309964		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000506923	ENST00000381322		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000506923	ENST00000513440		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-intron	ENST00000506923	ENST00000506923		ChiTaRS3.1			AA484855	CLOCK	chr4	56294355	-	CLOCK	chr4	56294265	+
intron-5UTR	ENST00000452825	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000452825	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000452825	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375401	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375401	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000375401	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000404049	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000404049	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000404049	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375379	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375379	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000375379	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375383	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000375383	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000375383	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000465402	ENST00000498485		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-5UTR	ENST00000465402	ENST00000259457		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
intron-intron	ENST00000465402	ENST00000536392		ChiTaRS3.1			AA488934	KDM5C	chrX	53221536	+	PSMB7	chr9	127115964	-
3UTR-intron	ENST00000409206	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409206	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409206	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409206	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409206	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409594	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409594	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-3UTR	ENST00000409594	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
3UTR-intron	ENST00000409594	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000289528	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000289528	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000289528	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000289528	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409412	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409412	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409412	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409412	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409097	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409097	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409097	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409097	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409336	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409336	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409336	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409336	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409217	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409217	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409217	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409217	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000468301	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000468301	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000468301	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000468301	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409319	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409319	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000409319	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000409319	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000409206		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000444522	ENST00000409594		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000444522	ENST00000289528		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000409412		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000444522	ENST00000409097		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000409336		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000409217		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000468301		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000409319		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-intron	ENST00000444522	ENST00000444522		ChiTaRS3.1			AA491105	ZFAND2B	chr2	220073150	-	ZFAND2B	chr2	220074145	+
intron-3UTR	ENST00000402673	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000402673	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000402673	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000402673	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000402673	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000402673	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-3UTR	ENST00000507419	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000507419	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000507419	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000507419	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000507419	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000507419	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-3UTR	ENST00000439578	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000439578	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000439578	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000439578	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000439578	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000439578	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-3UTR	ENST00000502539	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000502539	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000502539	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000502539	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000502539	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000502539	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-3UTR	ENST00000509937	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000509937	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000509937	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000509937	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000509937	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000509937	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-3UTR	ENST00000504242	ENST00000402673		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000504242	ENST00000507419		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000504242	ENST00000439578		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000504242	ENST00000502539		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000504242	ENST00000509937		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000504242	ENST00000504242		ChiTaRS3.1			AA491604	SAR1B	chr5	133936852	-	SAR1B	chr5	133936917	+
intron-intron	ENST00000372648	ENST00000264818		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000372648	ENST00000524462		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000372648	ENST00000525621		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000372648	ENST00000529370		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000372648	ENST00000529422		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000539497	ENST00000264818		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000539497	ENST00000524462		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000539497	ENST00000525621		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000539497	ENST00000529370		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000539497	ENST00000529422		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000466056	ENST00000264818		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000466056	ENST00000524462		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000466056	ENST00000525621		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000466056	ENST00000529370		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000466056	ENST00000529422		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000223865	ENST00000264818		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000223865	ENST00000524462		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000223865	ENST00000525621		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000223865	ENST00000529370		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-intron	ENST00000223865	ENST00000529422		ChiTaRS3.1			AA494324	TBC1D13	chr9	131558158	-	TYK2	chr19	10471981	+
intron-3CDS	ENST00000396353	ENST00000409839		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396353	ENST00000393878		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396353	ENST00000305165		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-3CDS	ENST00000396355	ENST00000409839		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396355	ENST00000393878		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396355	ENST00000305165		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-3CDS	ENST00000396354	ENST00000409839		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396354	ENST00000393878		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000396354	ENST00000305165		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-3CDS	ENST00000342673	ENST00000409839		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000342673	ENST00000393878		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000342673	ENST00000305165		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-3CDS	ENST00000571896	ENST00000409839		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000571896	ENST00000393878		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
intron-intron	ENST00000571896	ENST00000305165		ChiTaRS3.1			AA494454	NDE1	chr16	15797411	+	REG3A	chr2	79386879	-
3UTR-3UTR	ENST00000356175	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-3UTR	ENST00000356175	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000356175	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000356175	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000356175	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000356175	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-3UTR	ENST00000358273	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-3UTR	ENST00000358273	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000358273	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000358273	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000358273	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
3UTR-intron	ENST00000358273	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000431387	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000431387	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000431387	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000431387	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000431387	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000431387	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000581113	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000581113	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000581113	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000581113	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000581113	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000581113	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000417592	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000417592	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000417592	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000417592	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000417592	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000417592	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000444181	ENST00000356175		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-3UTR	ENST00000444181	ENST00000358273		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000444181	ENST00000431387		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000444181	ENST00000581113		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000444181	ENST00000417592		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
intron-intron	ENST00000444181	ENST00000444181		ChiTaRS3.1			AA496924	NF1	chr17	29704372	-	NF1	chr17	29704353	+
5CDS-5UTR	ENST00000285848	ENST00000589037		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000285848	ENST00000253788		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000285848	ENST00000589913		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-intron	ENST00000285848	ENST00000590864		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000604262	ENST00000589037		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000604262	ENST00000253788		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000604262	ENST00000589913		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-intron	ENST00000604262	ENST00000590864		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000412791	ENST00000589037		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000412791	ENST00000253788		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000412791	ENST00000589913		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-intron	ENST00000412791	ENST00000590864		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000358043	ENST00000589037		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000358043	ENST00000253788		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-5UTR	ENST00000358043	ENST00000589913		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
5CDS-intron	ENST00000358043	ENST00000590864		ChiTaRS3.1			AA503644	OXA1L	chr14	23240714	-	RPL27	chr17	41150760	+
intron-3UTR	ENST00000508821	ENST00000508821		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000508821	ENST00000425382		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000508821	ENST00000438340		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000508821	ENST00000505959		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000425382	ENST00000508821		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000425382	ENST00000425382		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000425382	ENST00000438340		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000425382	ENST00000505959		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000438340	ENST00000508821		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000438340	ENST00000425382		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000438340	ENST00000438340		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000438340	ENST00000505959		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000505959	ENST00000508821		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000505959	ENST00000425382		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000505959	ENST00000438340		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-3UTR	ENST00000505959	ENST00000505959		ChiTaRS3.1			AA506314	ELOVL7	chr5	60048105	-	ELOVL7	chr5	60047982	+
intron-intron	ENST00000540511	ENST00000266735		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
intron-intron	ENST00000540511	ENST00000553192		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
intron-intron	ENST00000540511	ENST00000552085		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
intron-intron	ENST00000322765	ENST00000266735		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
intron-intron	ENST00000322765	ENST00000553192		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
intron-intron	ENST00000322765	ENST00000552085		ChiTaRS3.1			AA506495	PLCD3	chr17	43189143	+	SNRPF	chr12	96258409	-
5CDS-intron	ENST00000392951	ENST00000392951		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
5CDS-3UTR	ENST00000392951	ENST00000530649		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
5CDS-3UTR	ENST00000392951	ENST00000532870		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-intron	ENST00000530649	ENST00000392951		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-3UTR	ENST00000530649	ENST00000530649		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-3UTR	ENST00000530649	ENST00000532870		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-intron	ENST00000532870	ENST00000392951		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-3UTR	ENST00000532870	ENST00000530649		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
3UTR-3UTR	ENST00000532870	ENST00000532870		ChiTaRS3.1			AA508504	TAGLN	chr11	117075268	+	TAGLN	chr11	117075364	-
intron-3UTR	ENST00000446326	ENST00000262085		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-intron	ENST00000446326	ENST00000479907		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
3UTR-3UTR	ENST00000289816	ENST00000262085		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
3UTR-intron	ENST00000289816	ENST00000479907		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-3UTR	ENST00000568064	ENST00000262085		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-intron	ENST00000568064	ENST00000479907		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-3UTR	ENST00000443381	ENST00000262085		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-intron	ENST00000443381	ENST00000479907		ChiTaRS3.1			AA513395	ZNF276	chr16	89806189	-	ZNF282	chr7	148922695	-
intron-intron	ENST00000434536	ENST00000434536		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000434536	ENST00000252512		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000434536	ENST00000518017		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000434536	ENST00000433566		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000252512	ENST00000434536		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000252512	ENST00000252512		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000252512	ENST00000518017		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000252512	ENST00000433566		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000518017	ENST00000434536		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000518017	ENST00000252512		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000518017	ENST00000518017		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000518017	ENST00000433566		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000433566	ENST00000434536		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000433566	ENST00000252512		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000433566	ENST00000518017		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-intron	ENST00000433566	ENST00000433566		ChiTaRS3.1			AA514694	XPO7	chr8	21821790	-	XPO7	chr8	21821561	+
intron-3UTR	ENST00000549920	ENST00000397063		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549920	ENST00000397062		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549920	ENST00000446151		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549920	ENST00000464747		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-intron	ENST00000549920	ENST00000423513		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000550645	ENST00000397063		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000550645	ENST00000397062		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000550645	ENST00000446151		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000550645	ENST00000464747		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-intron	ENST00000550645	ENST00000423513		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000552588	ENST00000397063		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000552588	ENST00000397062		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000552588	ENST00000446151		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000552588	ENST00000464747		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-intron	ENST00000552588	ENST00000423513		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549273	ENST00000397063		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549273	ENST00000397062		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549273	ENST00000446151		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-3UTR	ENST00000549273	ENST00000464747		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-intron	ENST00000549273	ENST00000423513		ChiTaRS3.1			AA516125	RPL18	chr19	49118641	+	NFE2L2	chr2	178095254	+
intron-intron	ENST00000339486	ENST00000339486		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000339486	ENST00000581585		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000339486	ENST00000577501		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000581585	ENST00000339486		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000581585	ENST00000581585		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000581585	ENST00000577501		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000577501	ENST00000339486		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000577501	ENST00000581585		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
intron-intron	ENST00000577501	ENST00000577501		ChiTaRS3.1			AA522934	RIOK3	chr18	21044780	+	RIOK3	chr18	21044865	-
3UTR-intron	ENST00000471231	ENST00000594624		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000594688		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000457234		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000593491		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000597203		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000599276		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000593740		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000471231	ENST00000596116		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000594624		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000594688		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000457234		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000593491		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000597203		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000599276		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000593740		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000338343	ENST00000596116		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000594624		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000594688		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000457234		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000593491		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000597203		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000599276		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000593740		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000562319	ENST00000596116		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000594624		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000594688		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000457234		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000593491		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000597203		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000599276		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000593740		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
3UTR-intron	ENST00000380310	ENST00000596116		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000594624		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000594688		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000457234		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000593491		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000597203		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000599276		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000593740		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000565690	ENST00000596116		ChiTaRS3.1			AA523944	FBXL19	chr16	30959951	-	LIPE-AS1	chr19	43023448	+
intron-intron	ENST00000446281	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000446281	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000452802	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000420095	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000441861	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000439407	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000455811	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000446281		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000452802		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000420095		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000441861		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000439407		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000455811		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000458666	ENST00000458666		ChiTaRS3.1			AA525495	LMCD1-AS1	chr3	8401900	-	LMCD1-AS1	chr3	8401850	+
intron-intron	ENST00000280979	ENST00000280979		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000557354		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000557272		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000280979	ENST00000554449		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000280979		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000557354		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000557272		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557354	ENST00000554449		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000280979		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000557354		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000557272		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000557272	ENST00000554449		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000280979		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000557354		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000557272		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000554449	ENST00000554449		ChiTaRS3.1			AA525804	AKAP6	chr14	33075948	+	AKAP6	chr14	33076010	-
intron-intron	ENST00000296597	ENST00000296597		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000296597	ENST00000511107		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000296597	ENST00000512623		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000511107	ENST00000296597		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000511107	ENST00000511107		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000511107	ENST00000512623		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000512623	ENST00000296597		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000512623	ENST00000511107		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
intron-intron	ENST00000512623	ENST00000512623		ChiTaRS3.1			AA526464	NDUFAF2	chr5	60334288	+	NDUFAF2	chr5	60334228	-
3UTR-3UTR	ENST00000371120	ENST00000371120		ChiTaRS3.1			AA526524	ATG4C	chr1	63330394	+	ATG4C	chr1	63330314	-
3UTR-3UTR	ENST00000371120	ENST00000317868		ChiTaRS3.1			AA526524	ATG4C	chr1	63330394	+	ATG4C	chr1	63330314	-
3UTR-3UTR	ENST00000317868	ENST00000371120		ChiTaRS3.1			AA526524	ATG4C	chr1	63330394	+	ATG4C	chr1	63330314	-
3UTR-3UTR	ENST00000317868	ENST00000317868		ChiTaRS3.1			AA526524	ATG4C	chr1	63330394	+	ATG4C	chr1	63330314	-
intron-intron	ENST00000324932	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000324932	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000324932	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000324932	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000324932	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000324932	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000359171	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000355260	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397004	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000397007	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000324932		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000359171		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000355260		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000397004		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000397007		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-intron	ENST00000488828	ENST00000488828		ChiTaRS3.1			AA527634	NUP98	chr11	3759420	-	NUP98	chr11	3759452	+
intron-3UTR	ENST00000256682	ENST00000256682		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000447318		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000541959		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000541967		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000447318	ENST00000256682		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000447318		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000541959		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000541967		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000541959	ENST00000256682		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000447318		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000541959		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000541967		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000541967	ENST00000256682		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000447318		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000541959		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000541967		ChiTaRS3.1			AA527815	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000522692	ENST00000522692		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000522692	ENST00000296953		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000522692	ENST00000540014		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000522692	ENST00000520420		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000522692	ENST00000517882		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000296953	ENST00000522692		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000296953	ENST00000296953		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000296953	ENST00000540014		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000296953	ENST00000520420		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000296953	ENST00000517882		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000540014	ENST00000522692		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000540014	ENST00000296953		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000540014	ENST00000540014		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000540014	ENST00000520420		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000540014	ENST00000517882		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000520420	ENST00000522692		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000520420	ENST00000296953		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000520420	ENST00000540014		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000520420	ENST00000520420		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000520420	ENST00000517882		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000517882	ENST00000522692		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000517882	ENST00000296953		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000517882	ENST00000540014		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000517882	ENST00000520420		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
intron-intron	ENST00000517882	ENST00000517882		ChiTaRS3.1			AA528405	CREBRF	chr5	172495907	+	CREBRF	chr5	172495650	-
3UTR-intron	ENST00000370128	ENST00000545729		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-5UTR	ENST00000370128	ENST00000500276		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-5UTR	ENST00000370128	ENST00000502069		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-5UTR	ENST00000370128	ENST00000545226		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-intron	ENST00000370128	ENST00000546134		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-intron	ENST00000370128	ENST00000542086		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-intron	ENST00000370128	ENST00000535436		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-intron	ENST00000370128	ENST00000500102		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
3UTR-intron	ENST00000370128	ENST00000537801		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000545729		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000498617	ENST00000500276		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000498617	ENST00000502069		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000498617	ENST00000545226		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000546134		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000542086		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000535436		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000500102		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000498617	ENST00000537801		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000545729		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000260563	ENST00000500276		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000260563	ENST00000502069		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000260563	ENST00000545226		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000546134		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000542086		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000535436		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000500102		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000260563	ENST00000537801		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000545729		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000370126	ENST00000500276		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000370126	ENST00000502069		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-5UTR	ENST00000370126	ENST00000545226		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000546134		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000542086		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000535436		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000500102		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-intron	ENST00000370126	ENST00000537801		ChiTaRS3.1			AA532445	RTCA	chr1	100758137	-	RASSF8-AS1	chr12	26105975	+
intron-3CDS	ENST00000319550	ENST00000319550		ChiTaRS3.1			AA534024	NT5DC1	chr6	116431852	+	NT5DC1	chr6	116439047	-
3UTR-3UTR	ENST00000352456	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000595018	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000392006	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000378215	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000602130	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000593587	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000263367	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
intron-3UTR	ENST00000594207	ENST00000323534		ChiTaRS3.1			AA534555	HNRNPUL1	chr19	41813370	-	RAP2B	chr3	152881560	+
5UTR-3CDS	ENST00000262646	ENST00000216181		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
5UTR-intron	ENST00000262646	ENST00000475726		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
5UTR-intron	ENST00000262646	ENST00000401701		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
5UTR-3CDS	ENST00000531289	ENST00000216181		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
5UTR-intron	ENST00000531289	ENST00000475726		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
5UTR-intron	ENST00000531289	ENST00000401701		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-3CDS	ENST00000529579	ENST00000216181		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-intron	ENST00000529579	ENST00000475726		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-intron	ENST00000529579	ENST00000401701		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-3CDS	ENST00000530071	ENST00000216181		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-intron	ENST00000530071	ENST00000475726		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
intron-intron	ENST00000530071	ENST00000401701		ChiTaRS3.1			AA535244	RAB2A	chr8	61429538	-	MYH9	chr22	36696271	+
3UTR-3UTR	ENST00000346916	ENST00000346916		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000545507		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000333511		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000353555		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000346916		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000545507		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000333511		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000353555		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000346916		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000545507		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000333511		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000353555		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000346916		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000545507		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000333511		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000353555		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000346916		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000545507		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000333511		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000353555		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			AA535665	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000296129	ENST00000297156		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
intron-intron	ENST00000296129	ENST00000514518		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
intron-intron	ENST00000425231	ENST00000297156		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
intron-intron	ENST00000425231	ENST00000514518		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
intron-intron	ENST00000490471	ENST00000297156		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
intron-intron	ENST00000490471	ENST00000514518		ChiTaRS3.1			AA535734	CDCP1	chr3	45125166	+	CAMLG	chr5	134077492	-
In-frame	ENST00000398606	ENST00000372484		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
In-frame	ENST00000398606	ENST00000354880		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
In-frame	ENST00000398606	ENST00000191018		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
In-frame	ENST00000398606	ENST00000372459		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
Frame-shit	ENST00000398603	ENST00000372484		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
Frame-shit	ENST00000398603	ENST00000354880		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
Frame-shit	ENST00000398603	ENST00000191018		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
Frame-shit	ENST00000398603	ENST00000372459		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
3UTR-3CDS	ENST00000498765	ENST00000372484		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
3UTR-3CDS	ENST00000498765	ENST00000354880		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
3UTR-3CDS	ENST00000498765	ENST00000191018		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
3UTR-3CDS	ENST00000498765	ENST00000372459		ChiTaRS3.1			AA535995	GSTP1	chr11	67353925	-	CTSA	chr20	44522704	-
intron-3UTR	ENST00000359543	ENST00000359543		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000359543	ENST00000566033		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000359543	ENST00000536829		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-3UTR	ENST00000566033	ENST00000359543		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000566033	ENST00000566033		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000566033	ENST00000536829		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-3UTR	ENST00000536829	ENST00000359543		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000536829	ENST00000566033		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-intron	ENST00000536829	ENST00000536829		ChiTaRS3.1			AA552814	EMP2	chr16	10622502	-	EMP2	chr16	10622439	+
intron-3CDS	ENST00000380394	ENST00000335681		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380394	ENST00000542504		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380394	ENST00000486017		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000498815	ENST00000335681		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000498815	ENST00000542504		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000498815	ENST00000486017		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380384	ENST00000335681		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380384	ENST00000542504		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380384	ENST00000486017		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000315377	ENST00000335681		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000315377	ENST00000542504		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000315377	ENST00000486017		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380381	ENST00000335681		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3CDS	ENST00000380381	ENST00000542504		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-3UTR	ENST00000380381	ENST00000486017		ChiTaRS3.1			AA553904	RPS6	chr9	19376568	+	NPAS2	chr2	101541622	+
intron-intron	ENST00000513488	ENST00000513488		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000513488	ENST00000362063		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000513488	ENST00000430262		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000362063	ENST00000513488		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000362063	ENST00000362063		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000362063	ENST00000430262		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000430262	ENST00000513488		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000430262	ENST00000362063		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
intron-intron	ENST00000430262	ENST00000430262		ChiTaRS3.1			AA557495	ZNF652	chr17	47366866	-	ZNF652	chr17	47367034	+
In-frame	ENST00000270357	ENST00000270357		ChiTaRS3.1			AA559954	RNPEPL1	chr2	241516041	+	RNPEPL1	chr2	241515987	-
5CDS-3UTR	ENST00000270357	ENST00000464550		ChiTaRS3.1			AA559954	RNPEPL1	chr2	241516041	+	RNPEPL1	chr2	241515987	-
3UTR-3CDS	ENST00000464550	ENST00000270357		ChiTaRS3.1			AA559954	RNPEPL1	chr2	241516041	+	RNPEPL1	chr2	241515987	-
3UTR-3UTR	ENST00000464550	ENST00000464550		ChiTaRS3.1			AA559954	RNPEPL1	chr2	241516041	+	RNPEPL1	chr2	241515987	-
intron-intron	ENST00000468410	ENST00000468410		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000468410	ENST00000222574		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000468410	ENST00000485846		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000468410	ENST00000461963		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000222574	ENST00000468410		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000222574	ENST00000222574		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000222574	ENST00000485846		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000222574	ENST00000461963		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000485846	ENST00000468410		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000485846	ENST00000222574		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000485846	ENST00000485846		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000485846	ENST00000461963		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000461963	ENST00000468410		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000461963	ENST00000222574		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000461963	ENST00000485846		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000461963	ENST00000461963		ChiTaRS3.1			AA560005	HBP1	chr7	106840769	-	HBP1	chr7	106840862	+
intron-intron	ENST00000320634	ENST00000320634		ChiTaRS3.1			AA564475	FAIM2	chr12	50261132	-	FAIM2	chr12	50260678	+
intron-intron	ENST00000320634	ENST00000550890		ChiTaRS3.1			AA564475	FAIM2	chr12	50261132	-	FAIM2	chr12	50260678	+
intron-intron	ENST00000550890	ENST00000320634		ChiTaRS3.1			AA564475	FAIM2	chr12	50261132	-	FAIM2	chr12	50260678	+
intron-intron	ENST00000550890	ENST00000550890		ChiTaRS3.1			AA564475	FAIM2	chr12	50261132	-	FAIM2	chr12	50260678	+
intron-3CDS	ENST00000371348	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371348	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371348	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371348	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000371348	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000371348	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371344	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371344	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371344	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371344	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000371344	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000371344	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000234831	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000234831	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000234831	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000234831	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000234831	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000234831	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371341	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371341	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371341	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371341	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000371341	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000371341	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000470395	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000470395	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000470395	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000470395	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000470395	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000470395	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371337	ENST00000371348		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371337	ENST00000371344		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371337	ENST00000234831		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-3CDS	ENST00000371337	ENST00000371341		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-5UTR	ENST00000371337	ENST00000470395		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000371337	ENST00000371337		ChiTaRS3.1			AA568505	TMEM59	chr1	54497872	-	TMEM59	chr1	54502354	+
intron-intron	ENST00000533076	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000533076	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000533076	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000533076	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000533076	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000533076	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000531974	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000531974	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000531974	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000531974	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000531974	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000531974	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000362021	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000362021	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000362021	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000362021	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000362021	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000362021	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000354884	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000354884	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000354884	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000354884	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000354884	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000354884	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000524928	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000524928	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000524928	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000524928	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-3UTR	ENST00000524928	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
3UTR-intron	ENST00000524928	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000529740	ENST00000533076		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000529740	ENST00000531974		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000529740	ENST00000362021		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000529740	ENST00000354884		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000529740	ENST00000524928		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-intron	ENST00000529740	ENST00000529740		ChiTaRS3.1			AA568975	SLC39A13	chr11	47437622	-	SLC39A13	chr11	47437698	+
intron-3UTR	ENST00000371730	ENST00000371730		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000371730	ENST00000371733		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000371730	ENST00000396122		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-intron	ENST00000371730	ENST00000493793		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000371733	ENST00000371730		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000371733	ENST00000371733		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000371733	ENST00000396122		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-intron	ENST00000371733	ENST00000493793		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000396122	ENST00000371730		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000396122	ENST00000371733		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000396122	ENST00000396122		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-intron	ENST00000396122	ENST00000493793		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000493793	ENST00000371730		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000493793	ENST00000371733		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3UTR	ENST00000493793	ENST00000396122		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-intron	ENST00000493793	ENST00000493793		ChiTaRS3.1			AA572905	EPS15	chr1	51822248	-	EPS15	chr1	51822308	+
intron-3CDS	ENST00000326245	ENST00000354655		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000479936		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000393081		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000433418		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000356116		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000354273		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000326245	ENST00000369410		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-3CDS	ENST00000487531	ENST00000354655		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000479936		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000393081		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000433418		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000356116		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000354273		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-intron	ENST00000487531	ENST00000369410		ChiTaRS3.1			AA573864	ITLN1	chr1	160846537	+	ACSL5	chr10	114171678	+
intron-3UTR	ENST00000268704	ENST00000534336		ChiTaRS3.1			AA574455	SPG7	chr16	89586265	-	MALAT1	chr11	65266526	+
intron-3UTR	ENST00000341316	ENST00000534336		ChiTaRS3.1			AA574455	SPG7	chr16	89586265	-	MALAT1	chr11	65266526	+
intron-3UTR	ENST00000565891	ENST00000534336		ChiTaRS3.1			AA574455	SPG7	chr16	89586265	-	MALAT1	chr11	65266526	+
5CDS-3UTR	ENST00000396821	ENST00000396821		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
5CDS-3UTR	ENST00000396821	ENST00000444597		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
5CDS-3UTR	ENST00000396821	ENST00000381633		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
5CDS-intron	ENST00000396821	ENST00000432525		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000444597	ENST00000396821		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000444597	ENST00000444597		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000444597	ENST00000381633		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-intron	ENST00000444597	ENST00000432525		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000381633	ENST00000396821		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000381633	ENST00000444597		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000381633	ENST00000381633		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-intron	ENST00000381633	ENST00000432525		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000432525	ENST00000396821		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000432525	ENST00000444597		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000432525	ENST00000381633		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-intron	ENST00000432525	ENST00000432525		ChiTaRS3.1			AA579394	DDX17	chr22	38879446	-	DDX17	chr22	38879513	+
intron-3UTR	ENST00000331872	ENST00000331872		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000331872	ENST00000417584		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000331872	ENST00000311223		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-5UTR	ENST00000331872	ENST00000491322		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000331872	ENST00000339526		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000417584	ENST00000331872		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000417584	ENST00000417584		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000417584	ENST00000311223		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-5UTR	ENST00000417584	ENST00000491322		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000417584	ENST00000339526		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000311223	ENST00000331872		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000311223	ENST00000417584		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000311223	ENST00000311223		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-5UTR	ENST00000311223	ENST00000491322		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000311223	ENST00000339526		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000491322	ENST00000331872		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000491322	ENST00000417584		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000491322	ENST00000311223		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-5UTR	ENST00000491322	ENST00000491322		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000491322	ENST00000339526		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000339526	ENST00000331872		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000339526	ENST00000417584		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000339526	ENST00000311223		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-5UTR	ENST00000339526	ENST00000491322		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-3UTR	ENST00000339526	ENST00000339526		ChiTaRS3.1			AA581184	GLUL	chr1	182352225	+	GLUL	chr1	182352153	-
intron-intron	ENST00000297423	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000297423	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000297423	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000297423	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000297423	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000297423	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518074	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000541342	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000521214	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000517693	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000297423		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000518074		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000541342		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000521214		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000517693		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-intron	ENST00000518060	ENST00000518060		ChiTaRS3.1			AA584154	SPIDR	chr8	48574277	-	SPIDR	chr8	48573935	+
intron-3UTR	ENST00000458659	ENST00000458659		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000458659	ENST00000501704		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000458659	ENST00000261489		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-intron	ENST00000458659	ENST00000460842		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000501704	ENST00000458659		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000501704	ENST00000501704		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000501704	ENST00000261489		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-intron	ENST00000501704	ENST00000460842		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000261489	ENST00000458659		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000261489	ENST00000501704		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000261489	ENST00000261489		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-intron	ENST00000261489	ENST00000460842		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000460842	ENST00000458659		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000460842	ENST00000501704		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-3UTR	ENST00000460842	ENST00000261489		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
intron-intron	ENST00000460842	ENST00000460842		ChiTaRS3.1			AA592994	TSC22D1	chr13	45008057	-	TSC22D1	chr13	45007953	+
In-frame	ENST00000380520	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380520	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380520	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380520	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380520	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380520	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380524	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380524	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380524	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380524	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380524	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380524	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380529	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380539	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380539	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380539	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380539	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380539	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380539	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000380546	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380546	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380546	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380546	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380546	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000380546	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
Frame-shit	ENST00000335686	ENST00000380520		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000335686	ENST00000380524		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000335686	ENST00000380529		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000335686	ENST00000380539		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000335686	ENST00000380546		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
In-frame	ENST00000335686	ENST00000335686		ChiTaRS3.1			AA593035	SERPINB6	chr6	2959402	-	SERPINB6	chr6	2959508	+
intron-3CDS	ENST00000245544	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000245544	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000245544	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000245544	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000245544	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000245544	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000245544	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000541827	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000541827	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000541827	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000541827	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000541827	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000541827	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000541827	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579324	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579324	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579324	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579324	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579324	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579324	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579324	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000449421	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000449421	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000449421	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000449421	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000449421	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000449421	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000449421	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579298	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579298	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000579298	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579298	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579298	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579298	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000579298	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000447371	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000447371	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000447371	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000447371	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000447371	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000447371	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000447371	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000540768	ENST00000245544		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000540768	ENST00000541827		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-3CDS	ENST00000540768	ENST00000579324		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000540768	ENST00000449421		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000540768	ENST00000579298		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000540768	ENST00000447371		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000540768	ENST00000540768		ChiTaRS3.1			AA593414	NUP85	chr17	73227434	+	NUP85	chr17	73229156	-
intron-intron	ENST00000367718	ENST00000510496		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000367718	ENST00000389156		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000367718	ENST00000380515		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000281834	ENST00000510496		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000281834	ENST00000389156		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000281834	ENST00000380515		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000488053	ENST00000510496		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000488053	ENST00000389156		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
intron-intron	ENST00000488053	ENST00000380515		ChiTaRS3.1			AA593554	TNFSF4	chr1	173173999	-	FAM169A	chr5	74183891	-
5CDS-3UTR	ENST00000330579	ENST00000367511		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
5CDS-intron	ENST00000330579	ENST00000487074		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
intron-3UTR	ENST00000535343	ENST00000367511		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
intron-intron	ENST00000535343	ENST00000487074		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
5CDS-3UTR	ENST00000538784	ENST00000367511		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
5CDS-intron	ENST00000538784	ENST00000487074		ChiTaRS3.1			AA595354	NOC4L	chr12	132636667	-	FAM129A	chr1	184761813	-
intron-intron	ENST00000456731	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000456731	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000456731	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000456731	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000456731	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000456731	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000456731	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000367537	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000367537	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000367537	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000367537	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000367537	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000367537	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000367537	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000508461	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000508461	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000508461	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000508461	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000508461	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000508461	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000508461	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000347615	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000347615	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000347615	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000347615	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000347615	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000347615	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000347615	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000507469	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000507469	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000507469	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000507469	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000507469	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000507469	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000507469	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000515829	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000515829	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000515829	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000515829	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000515829	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-3UTR	ENST00000515829	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
3UTR-intron	ENST00000515829	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000507406	ENST00000456731		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000507406	ENST00000367537		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000507406	ENST00000508461		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000507406	ENST00000347615		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000507406	ENST00000507469		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-3UTR	ENST00000507406	ENST00000515829		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000507406	ENST00000507406		ChiTaRS3.1			AA598525	SMG7	chr1	183522990	-	SMG7	chr1	183522874	+
intron-intron	ENST00000545334	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000545334	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000545334	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000545334	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000545334	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000545334	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000545334	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000537927	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000537927	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000537927	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000537927	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000537927	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000537927	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000537927	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000318304	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000318304	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000318304	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000318304	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000318304	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000318304	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000318304	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000535047	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000535047	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000535047	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000535047	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000535047	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000535047	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000535047	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000542629	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000542629	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000542629	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000542629	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000542629	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000542629	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000542629	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000228425	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000228425	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000228425	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000228425	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000228425	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-3UTR	ENST00000228425	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
3UTR-intron	ENST00000228425	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000541633	ENST00000545334		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000541633	ENST00000537927		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000541633	ENST00000318304		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000541633	ENST00000535047		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000541633	ENST00000542629		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-3UTR	ENST00000541633	ENST00000228425		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000541633	ENST00000541633		ChiTaRS3.1			AA599004	PPFIBP1	chr12	27848442	-	PPFIBP1	chr12	27848422	+
intron-intron	ENST00000565488	ENST00000272907		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000565488	ENST00000409269		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000370041	ENST00000272907		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000370041	ENST00000409269		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000569674	ENST00000272907		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000569674	ENST00000409269		ChiTaRS3.1			AA601185	SLC25A24	chr1	108726371	+	NYAP2	chr2	226528453	-
intron-intron	ENST00000418066	ENST00000418066		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000418066	ENST00000409920		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000418066	ENST00000394295		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000418066	ENST00000536030		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000409920	ENST00000418066		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000409920	ENST00000409920		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000409920	ENST00000394295		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000409920	ENST00000536030		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000394295	ENST00000418066		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000394295	ENST00000409920		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000394295	ENST00000394295		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000394295	ENST00000536030		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000536030	ENST00000418066		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000536030	ENST00000409920		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000536030	ENST00000394295		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-intron	ENST00000536030	ENST00000536030		ChiTaRS3.1			AA601894	ANXA4	chr2	70030892	+	ANXA4	chr2	70030748	-
intron-3CDS	ENST00000381638	ENST00000381638		ChiTaRS3.1			AA602705	ZZEF1	chr17	3919703	-	ZZEF1	chr17	3920745	+
intron-intron	ENST00000381638	ENST00000574474		ChiTaRS3.1			AA602705	ZZEF1	chr17	3919703	-	ZZEF1	chr17	3920745	+
intron-3CDS	ENST00000574474	ENST00000381638		ChiTaRS3.1			AA602705	ZZEF1	chr17	3919703	-	ZZEF1	chr17	3920745	+
intron-intron	ENST00000574474	ENST00000574474		ChiTaRS3.1			AA602705	ZZEF1	chr17	3919703	-	ZZEF1	chr17	3920745	+
intron-intron	ENST00000296658	ENST00000373954		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000296658	ENST00000419687		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000296658	ENST00000530324		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000296658	ENST00000234549		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000296658	ENST00000373949		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000296658	ENST00000010299		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000373954		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000419687		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000530324		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000234549		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000373949		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000510532	ENST00000010299		ChiTaRS3.1			AA602984	CMBL	chr5	10279785	+	FAM76A	chr1	28064261	+
intron-intron	ENST00000509479	ENST00000509479		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000509479	ENST00000327122		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000509479	ENST00000398940		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000327122	ENST00000509479		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000327122	ENST00000327122		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000327122	ENST00000398940		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000398940	ENST00000509479		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000398940	ENST00000327122		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
intron-intron	ENST00000398940	ENST00000398940		ChiTaRS3.1			AA603544	MAML3	chr4	140855626	-	MAML3	chr4	140855802	+
3UTR-3UTR	ENST00000001008	ENST00000368467		ChiTaRS3.1			AA603694	FKBP4	chr12	2912960	-	PMVK	chr1	154897522	+
intron-3UTR	ENST00000540260	ENST00000368467		ChiTaRS3.1			AA603694	FKBP4	chr12	2912960	-	PMVK	chr1	154897522	+
Frame-shit	ENST00000401722	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000401722	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000401722	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000401722	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000401722	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000401722	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000401722	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000401722	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000401722	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000228318	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000228318	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000228318	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000228318	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000228318	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000228318	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000228318	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000228318	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000228318	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000188376	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000188376	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000188376	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000188376	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000188376	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000188376	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000188376	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000188376	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000188376	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000551917	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000551917	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000551917	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000551917	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000551917	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000551917	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000551917	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000551917	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000551917	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000552981	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000552981	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000552981	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000552981	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000552981	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000552981	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000552981	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000552981	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000552981	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000551265	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000551265	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000551265	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000551265	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000551265	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000551265	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000551265	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000551265	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000551265	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000547534	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000547534	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000547534	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000547534	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-3CDS	ENST00000547534	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000547534	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000547534	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000547534	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-intron	ENST00000547534	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000549338	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000549338	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000549338	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000549338	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000549338	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000549338	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000549338	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000549338	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000549338	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000548847	ENST00000401722		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000548847	ENST00000228318		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
In-frame	ENST00000548847	ENST00000188376		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000548847	ENST00000551917		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
Frame-shit	ENST00000548847	ENST00000552981		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000548847	ENST00000551265		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000548847	ENST00000547534		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000548847	ENST00000549338		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
5CDS-intron	ENST00000548847	ENST00000548847		ChiTaRS3.1			AA618165	SLC25A3	chr12	98995276	-	SLC25A3	chr12	98995230	+
intron-5UTR	ENST00000290295	ENST00000409731		ChiTaRS3.1			AA622384	HOXB13	chr17	46805865	+	ACTG2	chr2	74120150	+
intron-5UTR	ENST00000290295	ENST00000345517		ChiTaRS3.1			AA622384	HOXB13	chr17	46805865	+	ACTG2	chr2	74120150	+
intron-5UTR	ENST00000290295	ENST00000409918		ChiTaRS3.1			AA622384	HOXB13	chr17	46805865	+	ACTG2	chr2	74120150	+
intron-5UTR	ENST00000290295	ENST00000409624		ChiTaRS3.1			AA622384	HOXB13	chr17	46805865	+	ACTG2	chr2	74120150	+
intron-3CDS	ENST00000357559	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000357559	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000357559	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000357559	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000305586	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000305586	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000305586	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000305586	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000491674	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491674	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491674	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491674	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000491062	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491062	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491062	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000491062	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000468861	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000468861	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000468861	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000468861	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000445140	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000445140	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000445140	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000445140	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-3CDS	ENST00000480918	ENST00000372484		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000480918	ENST00000354880		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000480918	ENST00000191018		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000480918	ENST00000372459		ChiTaRS3.1			AA625344	FXR1	chr3	180633869	-	CTSA	chr20	44520937	+
intron-intron	ENST00000281828	ENST00000334746		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000281828	ENST00000554565		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000281828	ENST00000393170		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000281828	ENST00000298896		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000281828	ENST00000555525		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000536361	ENST00000334746		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000536361	ENST00000554565		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000536361	ENST00000393170		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000536361	ENST00000298896		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000536361	ENST00000555525		ChiTaRS3.1			AA628074	FARSB	chr2	223436735	+	BTBD7	chr14	93749228	+
intron-intron	ENST00000356231	ENST00000393792		ChiTaRS3.1			AA628395	CDAN1	chr15	43015964	+	UBTD2	chr5	171699448	+
intron-intron	ENST00000372638	ENST00000557165		ChiTaRS3.1			AA630424	CITED4	chr1	41326876	+	CCNK	chr14	99969145	-
intron-intron	ENST00000372638	ENST00000389879		ChiTaRS3.1			AA630424	CITED4	chr1	41326876	+	CCNK	chr14	99969145	-
intron-intron	ENST00000372638	ENST00000555049		ChiTaRS3.1			AA630424	CITED4	chr1	41326876	+	CCNK	chr14	99969145	-
3UTR-3UTR	ENST00000302190	ENST00000302190		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
3UTR-intron	ENST00000302190	ENST00000520233		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
3UTR-intron	ENST00000302190	ENST00000518385		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
3UTR-intron	ENST00000302190	ENST00000522911		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
3UTR-intron	ENST00000302190	ENST00000519914		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-3UTR	ENST00000520233	ENST00000302190		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000520233	ENST00000520233		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000520233	ENST00000518385		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000520233	ENST00000522911		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000520233	ENST00000519914		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-3UTR	ENST00000518385	ENST00000302190		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000518385	ENST00000520233		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000518385	ENST00000518385		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000518385	ENST00000522911		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000518385	ENST00000519914		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-3UTR	ENST00000522911	ENST00000302190		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000522911	ENST00000520233		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000522911	ENST00000518385		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000522911	ENST00000522911		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000522911	ENST00000519914		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-3UTR	ENST00000519914	ENST00000302190		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000519914	ENST00000520233		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000519914	ENST00000518385		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000519914	ENST00000522911		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-intron	ENST00000519914	ENST00000519914		ChiTaRS3.1			AA632874	SDC2	chr8	97622867	+	SDC2	chr8	97622776	-
intron-3UTR	ENST00000262189	ENST00000262189		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000262189	ENST00000355193		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000262189	ENST00000485655		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-intron	ENST00000262189	ENST00000485241		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000355193	ENST00000262189		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000355193	ENST00000355193		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000355193	ENST00000485655		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-intron	ENST00000355193	ENST00000485241		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485655	ENST00000262189		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485655	ENST00000355193		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485655	ENST00000485655		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-intron	ENST00000485655	ENST00000485241		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485241	ENST00000262189		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485241	ENST00000355193		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000485241	ENST00000485655		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-intron	ENST00000485241	ENST00000485241		ChiTaRS3.1			AA639194	KMT2C	chr7	151832082	-	KMT2C	chr7	151832033	+
intron-3UTR	ENST00000228515	ENST00000228515		ChiTaRS3.1			AA640534	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-intron	ENST00000228515	ENST00000550461		ChiTaRS3.1			AA640534	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-3UTR	ENST00000550461	ENST00000228515		ChiTaRS3.1			AA640534	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-intron	ENST00000550461	ENST00000550461		ChiTaRS3.1			AA640534	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
5CDS-3UTR	ENST00000320857	ENST00000320857		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000320857	ENST00000370087		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000320857	ENST00000370086		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-intron	ENST00000320857	ENST00000460616		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000320857	ENST00000370085		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370087	ENST00000320857		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370087	ENST00000370087		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370087	ENST00000370086		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-intron	ENST00000370087	ENST00000460616		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370087	ENST00000370085		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370086	ENST00000320857		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370086	ENST00000370087		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370086	ENST00000370086		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-intron	ENST00000370086	ENST00000460616		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370086	ENST00000370085		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
3UTR-3UTR	ENST00000460616	ENST00000320857		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
3UTR-3UTR	ENST00000460616	ENST00000370087		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
3UTR-3UTR	ENST00000460616	ENST00000370086		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
3UTR-intron	ENST00000460616	ENST00000460616		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
3UTR-3UTR	ENST00000460616	ENST00000370085		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370085	ENST00000320857		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370085	ENST00000370087		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370085	ENST00000370086		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-intron	ENST00000370085	ENST00000460616		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
5CDS-3UTR	ENST00000370085	ENST00000370085		ChiTaRS3.1			AA640985	SSR4	chrX	153063887	+	SSR4	chrX	153063942	-
intron-3CDS	ENST00000495013	ENST00000345506		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000590949		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000546010		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000452307		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000588868		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000587646		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000345506		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000590949		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000546010		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000452307		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000588868		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000587646		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000345506		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000590949		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000546010		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000452307		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000588868		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000587646		ChiTaRS3.1			AA642514	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
3UTR-3UTR	ENST00000252108	ENST00000252108		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000252108	ENST00000431736		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-intron	ENST00000252108	ENST00000545354		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000431736	ENST00000252108		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000431736	ENST00000431736		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-intron	ENST00000431736	ENST00000545354		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-3UTR	ENST00000545354	ENST00000252108		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-3UTR	ENST00000545354	ENST00000431736		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-intron	ENST00000545354	ENST00000545354		ChiTaRS3.1			AA642795	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-intron	ENST00000245323	ENST00000245323		ChiTaRS3.1			AA643584	EFNB2	chr13	107164439	-	EFNB2	chr13	107175576	-
intron-3CDS	ENST00000521861	ENST00000521861		ChiTaRS3.1			AA648095	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000521861	ENST00000276682		ChiTaRS3.1			AA648095	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000276682	ENST00000521861		ChiTaRS3.1			AA648095	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-3CDS	ENST00000276682	ENST00000276682		ChiTaRS3.1			AA648095	EIF3H	chr8	117668129	-	EIF3H	chr8	117661089	+
intron-intron	ENST00000541515	ENST00000541515		ChiTaRS3.1			AA649594	LUC7L2	chr7	139107551	+	LUC7L2	chr7	139107676	-
3UTR-3UTR	ENST00000356978	ENST00000356978		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
3UTR-intron	ENST00000356978	ENST00000447653		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
3UTR-intron	ENST00000356978	ENST00000555132		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
3UTR-intron	ENST00000356978	ENST00000553542		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
3UTR-intron	ENST00000356978	ENST00000544280		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-3UTR	ENST00000447653	ENST00000356978		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000447653	ENST00000447653		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000447653	ENST00000555132		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000447653	ENST00000553542		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000447653	ENST00000544280		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-3UTR	ENST00000555132	ENST00000356978		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000555132	ENST00000447653		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000555132	ENST00000555132		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000555132	ENST00000553542		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000555132	ENST00000544280		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-3UTR	ENST00000553542	ENST00000356978		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000553542	ENST00000447653		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000553542	ENST00000555132		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000553542	ENST00000553542		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000553542	ENST00000544280		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-3UTR	ENST00000544280	ENST00000356978		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000544280	ENST00000447653		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000544280	ENST00000555132		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000544280	ENST00000553542		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000544280	ENST00000544280		ChiTaRS3.1			AA652945	CALM1	chr14	90871892	+	CALM1	chr14	90871777	-
intron-intron	ENST00000333503	ENST00000406775		ChiTaRS3.1			AA653505	PGP	chr16	2263753	+	AUTS2	chr7	69645771	-
intron-intron	ENST00000333503	ENST00000342771		ChiTaRS3.1			AA653505	PGP	chr16	2263753	+	AUTS2	chr7	69645771	-
intron-intron	ENST00000333503	ENST00000403018		ChiTaRS3.1			AA653505	PGP	chr16	2263753	+	AUTS2	chr7	69645771	-
intron-intron	ENST00000333503	ENST00000489774		ChiTaRS3.1			AA653505	PGP	chr16	2263753	+	AUTS2	chr7	69645771	-
intron-intron	ENST00000350026	ENST00000350026		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000350026	ENST00000346085		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000350026	ENST00000367148		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000350026	ENST00000275248		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000350026	ENST00000478761		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000346085	ENST00000350026		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000346085	ENST00000346085		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000346085	ENST00000367148		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000346085	ENST00000275248		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000346085	ENST00000478761		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000367148	ENST00000350026		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000367148	ENST00000346085		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000367148	ENST00000367148		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000367148	ENST00000275248		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000367148	ENST00000478761		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000275248	ENST00000350026		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000275248	ENST00000346085		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000275248	ENST00000367148		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000275248	ENST00000275248		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000275248	ENST00000478761		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000478761	ENST00000350026		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000478761	ENST00000346085		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000478761	ENST00000367148		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000478761	ENST00000275248		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
intron-intron	ENST00000478761	ENST00000478761		ChiTaRS3.1			AA654925	ARID1B	chr6	157199466	+	ARID1B	chr6	157199581	-
Frame-shit	ENST00000371714	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371714		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371710		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000337809		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000435686		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000447887		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000453295		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000428468		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000530544		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000531828		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000361556		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000473207		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000462759		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000486942		ChiTaRS3.1			AA657724	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
In-frame	ENST00000490882	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000490882	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000490882	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000490882	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000490882	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000490882	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000490882	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000490882	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000490882	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000429972	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000429972	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000429972	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000429972	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000429972	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000429972	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000429972	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000429972	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000429972	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000295956	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000295956	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000295956	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000295956	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000295956	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000295956	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000295956	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000295956	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000295956	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000358537	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000358537	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000358537	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000358537	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000358537	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000358537	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000358537	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000358537	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000358537	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000357272	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000357272	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000357272	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000357272	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000357272	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000357272	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000357272	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000357272	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000357272	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000348383	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000348383	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000348383	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000348383	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000348383	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000348383	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000348383	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000348383	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000348383	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000493452	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000493452	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000493452	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000493452	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000493452	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000493452	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000493452	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000493452	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000493452	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000419752	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000419752	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000419752	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
In-frame	ENST00000419752	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000419752	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000419752	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000419752	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000419752	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
5CDS-3UTR	ENST00000419752	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000484981	ENST00000490882		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000484981	ENST00000429972		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000484981	ENST00000295956		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3CDS	ENST00000484981	ENST00000358537		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000484981	ENST00000357272		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000484981	ENST00000348383		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000484981	ENST00000493452		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000484981	ENST00000419752		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000484981	ENST00000484981		ChiTaRS3.1			AA658515	FLNB	chr3	58155422	+	FLNB	chr3	58154375	-
3UTR-3UTR	ENST00000252108	ENST00000252108		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000252108	ENST00000431736		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-intron	ENST00000252108	ENST00000545354		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000431736	ENST00000252108		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-3UTR	ENST00000431736	ENST00000431736		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
3UTR-intron	ENST00000431736	ENST00000545354		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-3UTR	ENST00000545354	ENST00000252108		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-3UTR	ENST00000545354	ENST00000431736		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-intron	ENST00000545354	ENST00000545354		ChiTaRS3.1			AA665014	UBE4A	chr11	118269839	+	UBE4A	chr11	118269893	-
intron-3UTR	ENST00000367903	ENST00000380680		ChiTaRS3.1			AA665524	RGS5	chr1	163256916	+	UBL3	chr13	30339888	-
intron-3UTR	ENST00000534288	ENST00000380680		ChiTaRS3.1			AA665524	RGS5	chr1	163256916	+	UBL3	chr13	30339888	-
intron-3UTR	ENST00000313961	ENST00000380680		ChiTaRS3.1			AA665524	RGS5	chr1	163256916	+	UBL3	chr13	30339888	-
intron-3UTR	ENST00000530507	ENST00000380680		ChiTaRS3.1			AA665524	RGS5	chr1	163256916	+	UBL3	chr13	30339888	-
intron-3UTR	ENST00000527988	ENST00000380680		ChiTaRS3.1			AA665524	RGS5	chr1	163256916	+	UBL3	chr13	30339888	-
intron-intron	ENST00000295101	ENST00000295101		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000295101	ENST00000544049		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000295101	ENST00000493505		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000544049	ENST00000295101		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000544049	ENST00000544049		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000544049	ENST00000493505		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000493505	ENST00000295101		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000493505	ENST00000544049		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000493505	ENST00000493505		ChiTaRS3.1			AA682965	KCNJ3	chr2	155646241	+	KCNJ3	chr2	155652935	-
intron-intron	ENST00000315677	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000315677	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000315677	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581527	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581527	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581527	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400147	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400147	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400147	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400149	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400149	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400149	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400155	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400155	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400155	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400150	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400150	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400150	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000584874	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000584874	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000584874	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000534970	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000534970	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000534970	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000539435	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000539435	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000539435	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581699	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581699	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000581699	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400145	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400145	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000400145	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000515196	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000515196	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000515196	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000478161	ENST00000379214		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000478161	ENST00000389858		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-intron	ENST00000478161	ENST00000480977		ChiTaRS3.1			AA682974	DLGAP1	chr18	4399142	-	LGR4	chr11	27484503	-
intron-3CDS	ENST00000330387	ENST00000330387		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000330387	ENST00000456390		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000330387	ENST00000452463		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000330387	ENST00000458726		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000330387	ENST00000468127		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000456390	ENST00000330387		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000456390	ENST00000456390		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000456390	ENST00000452463		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000456390	ENST00000458726		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000456390	ENST00000468127		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000452463	ENST00000330387		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000452463	ENST00000456390		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000452463	ENST00000452463		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000452463	ENST00000458726		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000452463	ENST00000468127		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000458726	ENST00000330387		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000458726	ENST00000456390		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000458726	ENST00000452463		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000458726	ENST00000458726		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000458726	ENST00000468127		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000468127	ENST00000330387		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000468127	ENST00000456390		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000468127	ENST00000452463		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000468127	ENST00000458726		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-intron	ENST00000468127	ENST00000468127		ChiTaRS3.1			AA694015	CREB3L2	chr7	137585858	+	CREB3L2	chr7	137569869	+
intron-3CDS	ENST00000349945	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000349945	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000432919	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000354436	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000567239	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000393742	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000349945		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000432919		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000354436		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000567239		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000393742		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
intron-3CDS	ENST00000566899	ENST00000566899		ChiTaRS3.1			AA694235	NFAT5	chr16	69723734	-	NFAT5	chr16	69726018	-
3UTR-intron	ENST00000377403	ENST00000356607		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000377403	ENST00000538836		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000377403	ENST00000492696		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000356607		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000538836		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000492696		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000356607		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000538836		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000492696		ChiTaRS3.1			AA701254	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000382159	ENST00000398520		ChiTaRS3.1			AA701654	GNG7	chr19	2515019	+	SLC26A1	chr4	979362	-
intron-intron	ENST00000382159	ENST00000361661		ChiTaRS3.1			AA701654	GNG7	chr19	2515019	+	SLC26A1	chr4	979362	-
intron-intron	ENST00000382159	ENST00000398516		ChiTaRS3.1			AA701654	GNG7	chr19	2515019	+	SLC26A1	chr4	979362	-
intron-intron	ENST00000382159	ENST00000513138		ChiTaRS3.1			AA701654	GNG7	chr19	2515019	+	SLC26A1	chr4	979362	-
intron-3CDS	ENST00000294383	ENST00000349945		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000294383	ENST00000432919		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000294383	ENST00000354436		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000294383	ENST00000567239		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000294383	ENST00000393742		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000294383	ENST00000566899		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000349945		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000432919		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000354436		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000567239		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000393742		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000407756	ENST00000566899		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000349945		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000432919		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000354436		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000567239		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000393742		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-3CDS	ENST00000484447	ENST00000566899		ChiTaRS3.1			AA703115	USP24	chr1	55533550	-	NFAT5	chr16	69687235	-
intron-intron	ENST00000354577	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000354577		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000403834		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368068		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000479213		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368060		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368058		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000545957		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368053		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000540546		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000539158		ChiTaRS3.1			AA721515	MED23	chr6	131932398	-	MED23	chr6	131932481	+
5CDS-intron	ENST00000264451	ENST00000264451		ChiTaRS3.1			AA721604	SLC30A9	chr4	42068638	+	SLC30A9	chr4	42069208	-
3UTR-intron	ENST00000011653	ENST00000531326		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
3UTR-intron	ENST00000011653	ENST00000392597		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
3UTR-3UTR	ENST00000011653	ENST00000351677		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-intron	ENST00000541982	ENST00000531326		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-intron	ENST00000541982	ENST00000392597		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-3UTR	ENST00000541982	ENST00000351677		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-intron	ENST00000538827	ENST00000531326		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-intron	ENST00000538827	ENST00000392597		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-3UTR	ENST00000538827	ENST00000351677		ChiTaRS3.1			AA722635	CD4	chr12	6929913	-	PTPN11	chr12	112945636	-
intron-3CDS	ENST00000333229	ENST00000574322		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000333229	ENST00000573600		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000333229	ENST00000318988		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000333229	ENST00000572043		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000342449	ENST00000574322		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000342449	ENST00000573600		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000342449	ENST00000318988		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000342449	ENST00000572043		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000380800	ENST00000574322		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000380800	ENST00000573600		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000380800	ENST00000318988		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000380800	ENST00000572043		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000341322	ENST00000574322		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000341322	ENST00000573600		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000341322	ENST00000318988		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000341322	ENST00000572043		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000470108	ENST00000574322		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000470108	ENST00000573600		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000470108	ENST00000318988		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
intron-3CDS	ENST00000470108	ENST00000572043		ChiTaRS3.1			AA723224	BRWD1	chr21	40669062	+	CTDNEP1	chr17	7149622	+
3UTR-3CDS	ENST00000216492	ENST00000216492		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
3UTR-3CDS	ENST00000216492	ENST00000334654		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
3UTR-intron	ENST00000216492	ENST00000553866		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
3UTR-3CDS	ENST00000334654	ENST00000216492		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
3UTR-3CDS	ENST00000334654	ENST00000334654		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
3UTR-intron	ENST00000334654	ENST00000553866		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
intron-3CDS	ENST00000553866	ENST00000216492		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
intron-3CDS	ENST00000553866	ENST00000334654		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
intron-intron	ENST00000553866	ENST00000553866		ChiTaRS3.1			AA724235	CHGA	chr14	93401431	-	CHGA	chr14	93399121	+
intron-5UTR	ENST00000597960	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000597960	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000597960	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-5UTR	ENST00000610101	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000610101	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000610101	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-5UTR	ENST00000596558	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000596558	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000596558	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-5UTR	ENST00000222308	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000222308	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000222308	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-5UTR	ENST00000608443	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000608443	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000608443	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-5UTR	ENST00000453489	ENST00000356922		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000453489	ENST00000442234		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
intron-intron	ENST00000453489	ENST00000405925		ChiTaRS3.1			AA732934	FKBP8	chr19	18642910	+	LIG4	chr13	108867019	+
3UTR-3UTR	ENST00000375712	ENST00000375712		ChiTaRS3.1			AA740234	KIF3B	chr20	30922791	+	KIF3B	chr20	30922726	-
3UTR-intron	ENST00000375712	ENST00000418717		ChiTaRS3.1			AA740234	KIF3B	chr20	30922791	+	KIF3B	chr20	30922726	-
intron-3UTR	ENST00000418717	ENST00000375712		ChiTaRS3.1			AA740234	KIF3B	chr20	30922791	+	KIF3B	chr20	30922726	-
intron-intron	ENST00000418717	ENST00000418717		ChiTaRS3.1			AA740234	KIF3B	chr20	30922791	+	KIF3B	chr20	30922726	-
3UTR-3UTR	ENST00000382456	ENST00000382456		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-intron	ENST00000382456	ENST00000411763		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000382456	ENST00000292807		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000382456	ENST00000439647		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000382456	ENST00000461733		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-3UTR	ENST00000411763	ENST00000382456		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-intron	ENST00000411763	ENST00000411763		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-3UTR	ENST00000411763	ENST00000292807		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-3UTR	ENST00000411763	ENST00000439647		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-3UTR	ENST00000411763	ENST00000461733		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000292807	ENST00000382456		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-intron	ENST00000292807	ENST00000411763		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000292807	ENST00000292807		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000292807	ENST00000439647		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000292807	ENST00000461733		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000439647	ENST00000382456		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-intron	ENST00000439647	ENST00000411763		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000439647	ENST00000292807		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000439647	ENST00000439647		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000439647	ENST00000461733		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000461733	ENST00000382456		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-intron	ENST00000461733	ENST00000411763		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000461733	ENST00000292807		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000461733	ENST00000439647		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
3UTR-3UTR	ENST00000461733	ENST00000461733		ChiTaRS3.1			AA743965	AP2M1	chr3	183901458	+	AP2M1	chr3	183901617	-
intron-5UTR	ENST00000556539	ENST00000556539		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000556539	ENST00000314128		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000556539	ENST00000557235		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000556539	ENST00000418572		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-5UTR	ENST00000314128	ENST00000556539		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000314128	ENST00000314128		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000314128	ENST00000557235		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000314128	ENST00000418572		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-5UTR	ENST00000557235	ENST00000556539		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000557235	ENST00000314128		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000557235	ENST00000557235		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000557235	ENST00000418572		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-5UTR	ENST00000418572	ENST00000556539		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000418572	ENST00000314128		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000418572	ENST00000557235		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-intron	ENST00000418572	ENST00000418572		ChiTaRS3.1			AA745575	STAT2	chr12	56735425	-	STAT2	chr12	56735485	+
intron-3CDS	ENST00000295321	ENST00000295321		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000295321	ENST00000455721		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000295321	ENST00000486662		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-3CDS	ENST00000455721	ENST00000295321		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000455721	ENST00000455721		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000455721	ENST00000486662		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-3CDS	ENST00000486662	ENST00000295321		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000486662	ENST00000455721		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000486662	ENST00000486662		ChiTaRS3.1			AA748505	IWS1	chr2	128238494	+	IWS1	chr2	128247442	-
intron-intron	ENST00000394417	ENST00000394417		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000394417	ENST00000467648		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000394417	ENST00000487469		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000394417	ENST00000337130		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000394417	ENST00000445915		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000467648	ENST00000394417		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000467648	ENST00000467648		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000467648	ENST00000487469		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000467648	ENST00000337130		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000467648	ENST00000445915		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000487469	ENST00000394417		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000487469	ENST00000467648		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000487469	ENST00000487469		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000487469	ENST00000337130		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000487469	ENST00000445915		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000337130	ENST00000394417		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000337130	ENST00000467648		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000337130	ENST00000487469		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000337130	ENST00000337130		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000337130	ENST00000445915		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000445915	ENST00000394417		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000445915	ENST00000467648		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000445915	ENST00000487469		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000445915	ENST00000337130		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
intron-intron	ENST00000445915	ENST00000445915		ChiTaRS3.1			AA765965	UGP2	chr2	64098699	-	UGP2	chr2	64104850	-
3UTR-3CDS	ENST00000287908	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000287908	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000287908	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000287908	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000287908	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000287908	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000287908	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000287908	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394626	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394626	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394626	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394626	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394626	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394626	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394626	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394626	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000394622	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000394622	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000394622	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-3CDS	ENST00000394622	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000394622	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000394622	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000394622	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
3UTR-intron	ENST00000394622	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394632	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394632	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394632	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394632	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394632	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394632	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394632	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394632	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394621	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394621	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394621	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394621	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394621	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394621	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394621	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394621	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000402625	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000402625	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000402625	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000402625	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000402625	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000402625	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000402625	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000402625	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394629	ENST00000537403		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394629	ENST00000307712		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394629	ENST00000536508		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000394629	ENST00000545328		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394629	ENST00000553925		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394629	ENST00000548032		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394629	ENST00000557280		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-intron	ENST00000394629	ENST00000553970		ChiTaRS3.1			AA774945	STEAP2	chr7	89863607	-	SEC23A	chr14	39524422	+
intron-3CDS	ENST00000532456	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-intron	ENST00000532456	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-intron	ENST00000532456	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-3CDS	ENST00000539648	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-intron	ENST00000539648	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-intron	ENST00000539648	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000528499	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000528499	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000528499	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000263574	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000263574	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000263574	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000345598	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000345598	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000345598	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000338167	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000338167	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000338167	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000278756	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000278756	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000278756	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-3CDS	ENST00000543137	ENST00000296721		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000543137	ENST00000522492		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
3UTR-intron	ENST00000543137	ENST00000515000		ChiTaRS3.1			AA778105	APLP2	chr11	130013435	-	AFAP1L1	chr5	148712365	-
intron-intron	ENST00000468306	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000468306	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000468306	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000370401	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000370401	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000370401	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000432680	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000432680	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000432680	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000262858	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000262858	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000262858	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000426613	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-3UTR	ENST00000426613	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
5CDS-intron	ENST00000426613	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000455522	ENST00000468306		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000370401		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000432680		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000262858		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-3UTR	ENST00000455522	ENST00000426613		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000455522	ENST00000455522		ChiTaRS3.1			AA779765	MAMLD1	chrX	149638876	-	MAMLD1	chrX	149681165	-
intron-intron	ENST00000245817	ENST00000377602		ChiTaRS3.1			AA780464	TNFSF9	chr19	6536075	+	ST8SIA6	chr10	17432093	+
intron-intron	ENST00000267085	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000267085		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000379843		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000379846		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000444623		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000453446		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000542115		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000491654		ChiTaRS3.1			AA805355	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000278823	ENST00000297423		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000278823	ENST00000518074		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000278823	ENST00000541342		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000278823	ENST00000521214		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000278823	ENST00000517693		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000278823	ENST00000518060		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000297423		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000518074		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000541342		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000521214		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000517693		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000524902	ENST00000518060		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000297423		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000518074		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000541342		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000521214		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000517693		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000527204	ENST00000518060		ChiTaRS3.1			AA808215	MTA2	chr11	62360804	+	SPIDR	chr8	48626778	+
intron-intron	ENST00000283558	ENST00000283558		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375630		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000487903		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000375645		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000283558	ENST00000419448		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000283558		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375630		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000487903		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000375645		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375630	ENST00000419448		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000283558		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375630		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000487903		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000375645		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000487903	ENST00000419448		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000283558		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375630		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000487903		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000375645		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000375645	ENST00000419448		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000283558		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375630		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000487903		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000375645		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000419448	ENST00000419448		ChiTaRS3.1			AA825945	ATP11A	chr13	113446050	+	ATP11A	chr13	113446244	-
intron-intron	ENST00000452400	ENST00000452400		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000452400	ENST00000267974		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000452400	ENST00000524223		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000452400		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000267974		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000267974	ENST00000524223		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000452400		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000267974		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000524223	ENST00000524223		ChiTaRS3.1			AA829004	NCOA2	chr8	71218565	-	NCOA2	chr8	71218447	+
intron-intron	ENST00000472531	ENST00000341056		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396045		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000310758		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396040		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000442504		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000448602		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000479447		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000341056		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396045		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000310758		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396040		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000442504		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000448602		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000479447		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000341056		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396045		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000310758		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396040		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000442504		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000448602		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000479447		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000341056		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396045		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000310758		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396040		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000442504		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000448602		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000479447		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000341056		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396045		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000310758		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396040		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000442504		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000448602		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000479447		ChiTaRS3.1			AA829405	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
3UTR-intron	ENST00000249647	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000379441		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000179765		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000551812		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000549884		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000553222		ChiTaRS3.1			AA830385	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-3UTR	ENST00000378097	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378097	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378097	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378097	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378097	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378097	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000352527	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000352527	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000352527	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000352527	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000352527	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000352527	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000341524	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000341524	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000341524	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000341524	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000341524	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000341524	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000164247	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000164247	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000164247	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000164247	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000164247	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000164247	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378083	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378083	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378083	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378083	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-3UTR	ENST00000378083	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
3UTR-intron	ENST00000378083	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378111	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378111	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378111	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378111	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378111	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378111	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378092	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378092	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378092	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378092	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378092	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378092	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000602612	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000602612	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000602612	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000602612	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000602612	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000602612	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378087	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378087	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378087	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378087	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000378087	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000378087	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000459822	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000459822	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000459822	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000459822	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000459822	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000459822	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000458166	ENST00000378097		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000458166	ENST00000352527		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000458166	ENST00000341524		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000458166	ENST00000164247		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3UTR	ENST00000458166	ENST00000378083		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000378111		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000378092		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000602612		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000378087		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000459822		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-intron	ENST00000458166	ENST00000458166		ChiTaRS3.1			AA833885	KCNAB2	chr1	6159378	-	KCNAB2	chr1	6159301	+
intron-3CDS	ENST00000535622	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000535622	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000535622	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000535622	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400246	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400246	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400246	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000400246	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000266091	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000266091	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000266091	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000266091	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382105	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382105	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382105	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000382105	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400249	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400249	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400249	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000400249	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382112	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382112	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382112	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000382112	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382111	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382111	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000382111	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000382111	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400248	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400248	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400248	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000400248	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000494060	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000494060	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000494060	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000494060	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000536766	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000536766	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000536766	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000536766	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400242	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400242	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000400242	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000400242	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000539165	ENST00000521662		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000539165	ENST00000521688		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3CDS	ENST00000539165	ENST00000520147		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
intron-3UTR	ENST00000539165	ENST00000522407		ChiTaRS3.1			AA838174	DEPDC5	chr22	32287159	-	ENY2	chr8	110352754	-
3UTR-3UTR	ENST00000536985	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000536985	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000536985	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000536985	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000536985	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000536985	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000536985	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000536985	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379789	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379789	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379789	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379789	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379789	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379789	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379789	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379789	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000540253	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000540253	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000540253	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000540253	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000540253	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000540253	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000540253	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000540253	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000317350	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000317350	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000317350	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000317350	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000317350	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000317350	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000317350	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000317350	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379785	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379785	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379785	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379785	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379785	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379785	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379785	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379785	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379782	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379782	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379782	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379782	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379782	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379782	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000379782	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000379782	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000360521	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000360521	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000360521	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000360521	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000360521	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000360521	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-intron	ENST00000360521	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
intron-3UTR	ENST00000360521	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379775	ENST00000536985		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379775	ENST00000379789		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379775	ENST00000540253		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379775	ENST00000317350		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379775	ENST00000379785		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379775	ENST00000379782		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-intron	ENST00000379775	ENST00000360521		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
3UTR-3UTR	ENST00000379775	ENST00000379775		ChiTaRS3.1			AA847065	PFKFB3	chr10	6277443	+	PFKFB3	chr10	6277387	-
Frame-shit	ENST00000368395	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368395	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000338684	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000338684	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000438413	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000438413	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
In-frame	ENST00000457295	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000457295	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-3CDS	ENST00000462215	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5UTR-intron	ENST00000462215	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000368392	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368392	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
In-frame	ENST00000368393	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368393	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000368390	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368390	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-3CDS	ENST00000368396	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368396	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-3CDS	ENST00000343256	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000343256	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000368398	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000368398	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-3CDS	ENST00000368389	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000368389	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-3CDS	ENST00000342482	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000342482	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
Frame-shit	ENST00000337604	ENST00000368395		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000338684		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000438413		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000457295		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000462215		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368392		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368393		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368390		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368396		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000343256		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368398		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000368389		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000342482		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
5CDS-intron	ENST00000337604	ENST00000337604		ChiTaRS3.1			AA847094	MUC1	chr1	155160193	-	MUC1	chr1	155160771	+
intron-intron	ENST00000445552	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000445552	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000337845	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000329240	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000573185	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000570550	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000336125	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549904	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000550273	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000549665	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000445552		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000337845		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000329240		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000573185		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000570550		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000336125		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000549904		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000550273		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000549665		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
intron-intron	ENST00000553155	ENST00000553155		ChiTaRS3.1			AA847265	ARL17A	chr17	619875	+	ARL17A	chr17	619792	-
3UTR-intron	ENST00000320776	ENST00000432069		ChiTaRS3.1			AA855094	BLOC1S4	chr4	6718851	-	NOL3	chr16	67206350	-
3UTR-intron	ENST00000320776	ENST00000564053		ChiTaRS3.1			AA855094	BLOC1S4	chr4	6718851	-	NOL3	chr16	67206350	-
3UTR-intron	ENST00000320776	ENST00000568199		ChiTaRS3.1			AA855094	BLOC1S4	chr4	6718851	-	NOL3	chr16	67206350	-
3UTR-intron	ENST00000320776	ENST00000268605		ChiTaRS3.1			AA855094	BLOC1S4	chr4	6718851	-	NOL3	chr16	67206350	-
3UTR-intron	ENST00000320776	ENST00000568146		ChiTaRS3.1			AA855094	BLOC1S4	chr4	6718851	-	NOL3	chr16	67206350	-
intron-intron	ENST00000334534	ENST00000334534		ChiTaRS3.1			AA857485	SLX4IP	chr20	10564693	+	SLX4IP	chr20	10564619	-
intron-intron	ENST00000438284	ENST00000229238		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000438284	ENST00000543164		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000438284	ENST00000543703		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-intron	ENST00000431010	ENST00000229238		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000431010	ENST00000543164		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000431010	ENST00000543703		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-intron	ENST00000397056	ENST00000229238		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000397056	ENST00000543164		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
intron-5UTR	ENST00000397056	ENST00000543703		ChiTaRS3.1			AA872664	HRH1	chr3	11209833	-	MRPL51	chr12	6602976	-
3UTR-3UTR	ENST00000300952	ENST00000300952		ChiTaRS3.1			AA883525	MIDN	chr19	1258639	+	MIDN	chr19	1258098	+
3UTR-3UTR	ENST00000300952	ENST00000591446		ChiTaRS3.1			AA883525	MIDN	chr19	1258639	+	MIDN	chr19	1258098	+
3UTR-3UTR	ENST00000591446	ENST00000300952		ChiTaRS3.1			AA883525	MIDN	chr19	1258639	+	MIDN	chr19	1258098	+
3UTR-3UTR	ENST00000591446	ENST00000591446		ChiTaRS3.1			AA883525	MIDN	chr19	1258639	+	MIDN	chr19	1258098	+
3UTR-intron	ENST00000377351	ENST00000320152		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000377351	ENST00000376378		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000377351	ENST00000376376		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000335972	ENST00000320152		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000335972	ENST00000376378		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000335972	ENST00000376376		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
intron-intron	ENST00000490869	ENST00000320152		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
intron-intron	ENST00000490869	ENST00000376378		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
intron-intron	ENST00000490869	ENST00000376376		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000377269	ENST00000320152		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000377269	ENST00000376378		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000377269	ENST00000376376		ChiTaRS3.1			AA883605	UBA1	chrX	47074447	-	PRTFDC1	chr10	25162530	+
3UTR-intron	ENST00000334982	ENST00000275159		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000334982	ENST00000398212		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000334982	ENST00000398197		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000484480	ENST00000275159		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000484480	ENST00000398212		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000484480	ENST00000398197		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000310450	ENST00000275159		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000310450	ENST00000398212		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000310450	ENST00000398197		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000398602	ENST00000275159		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000398602	ENST00000398212		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
3UTR-intron	ENST00000398602	ENST00000398197		ChiTaRS3.1			AA884005	NAA20	chr20	20014161	-	TBC1D32	chr6	121428950	+
intron-3CDS	ENST00000222330	ENST00000412830		ChiTaRS3.1			AA885364	GSK3A	chr19	42734626	+	PWP1	chr12	108082549	+
intron-3CDS	ENST00000222330	ENST00000541166		ChiTaRS3.1			AA885364	GSK3A	chr19	42734626	+	PWP1	chr12	108082549	+
intron-3CDS	ENST00000398249	ENST00000412830		ChiTaRS3.1			AA885364	GSK3A	chr19	42734626	+	PWP1	chr12	108082549	+
intron-3CDS	ENST00000398249	ENST00000541166		ChiTaRS3.1			AA885364	GSK3A	chr19	42734626	+	PWP1	chr12	108082549	+
intron-3UTR	ENST00000366676	ENST00000371711		ChiTaRS3.1			AA902204	TAF5L	chr1	229729242	+	B4GALT5	chr20	48252844	+
intron-3UTR	ENST00000258281	ENST00000371711		ChiTaRS3.1			AA902204	TAF5L	chr1	229729242	+	B4GALT5	chr20	48252844	+
intron-3UTR	ENST00000366675	ENST00000371711		ChiTaRS3.1			AA902204	TAF5L	chr1	229729242	+	B4GALT5	chr20	48252844	+
intron-3UTR	ENST00000477957	ENST00000371711		ChiTaRS3.1			AA902204	TAF5L	chr1	229729242	+	B4GALT5	chr20	48252844	+
intron-3UTR	ENST00000366674	ENST00000371711		ChiTaRS3.1			AA902204	TAF5L	chr1	229729242	+	B4GALT5	chr20	48252844	+
intron-intron	ENST00000342704	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000413405		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000414457		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000446807		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000423223		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000445521		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000455774		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000430295		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000608994		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000609413		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000537908		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000427063		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000438202		ChiTaRS3.1			AA905634	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-3CDS	ENST00000307877	ENST00000366794		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000307877	ENST00000490921		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000307877	ENST00000366792		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000307877	ENST00000366791		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000307877	ENST00000366790		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-3CDS	ENST00000539137	ENST00000366794		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000539137	ENST00000490921		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000539137	ENST00000366792		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000539137	ENST00000366791		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000539137	ENST00000366790		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-3CDS	ENST00000355113	ENST00000366794		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000355113	ENST00000490921		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000355113	ENST00000366792		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000355113	ENST00000366791		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000355113	ENST00000366790		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-3CDS	ENST00000602720	ENST00000366794		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000602720	ENST00000490921		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000602720	ENST00000366792		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000602720	ENST00000366791		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000602720	ENST00000366790		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-3CDS	ENST00000542536	ENST00000366794		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000542536	ENST00000490921		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000542536	ENST00000366792		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000542536	ENST00000366791		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000542536	ENST00000366790		ChiTaRS3.1			AA911044	SRP68	chr17	74035285	+	PARP1	chr1	226578231	+
intron-intron	ENST00000546136	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000546136	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000381381	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000309359	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000451604	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000537393	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541536	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000396007	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000545921	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000541847	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000441133	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000546136		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000381381		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000309359		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000451604		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000537393		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000541536		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000396007		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000545921		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000541847		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000441133		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
intron-intron	ENST00000536850	ENST00000536850		ChiTaRS3.1			AA927314	SOX5	chr12	24040872	+	SOX5	chr12	24014149	+
In-frame	ENST00000262043	ENST00000262043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000509330		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000393387		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000420043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000509330	ENST00000262043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000509330		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000393387		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000420043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
In-frame	ENST00000393387	ENST00000262043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000509330		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000393387		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000420043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000420043	ENST00000262043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000509330		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000393387		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000420043		ChiTaRS3.1			AA931544	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
3UTR-3UTR	ENST00000304166	ENST00000304166		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
3UTR-intron	ENST00000304166	ENST00000409363		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
3UTR-intron	ENST00000304166	ENST00000396211		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
3UTR-intron	ENST00000304166	ENST00000409489		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-3UTR	ENST00000409363	ENST00000304166		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409363	ENST00000409363		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409363	ENST00000396211		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409363	ENST00000409489		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-3UTR	ENST00000396211	ENST00000304166		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000396211	ENST00000409363		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000396211	ENST00000396211		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000396211	ENST00000409489		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-3UTR	ENST00000409489	ENST00000304166		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409489	ENST00000409363		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409489	ENST00000396211		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
intron-intron	ENST00000409489	ENST00000409489		ChiTaRS3.1			AA931674	ADCYAP1R1	chr7	31150720	-	ADCYAP1R1	chr7	31150812	+
3UTR-3UTR	ENST00000367090	ENST00000367090		ChiTaRS3.1			AA932875	TMEM181	chr6	159056002	-	TMEM181	chr6	159055708	+
intron-intron	ENST00000441750	ENST00000273258		ChiTaRS3.1			AA934385	NBAS	chr2	15307392	+	ARL6IP5	chr3	69138902	+
intron-intron	ENST00000441750	ENST00000478935		ChiTaRS3.1			AA934385	NBAS	chr2	15307392	+	ARL6IP5	chr3	69138902	+
intron-intron	ENST00000281513	ENST00000273258		ChiTaRS3.1			AA934385	NBAS	chr2	15307392	+	ARL6IP5	chr3	69138902	+
intron-intron	ENST00000281513	ENST00000478935		ChiTaRS3.1			AA934385	NBAS	chr2	15307392	+	ARL6IP5	chr3	69138902	+
intron-intron	ENST00000430853	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430853	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000424161	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000419253	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454741	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000453632	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000454996	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428818	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000435348	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000434221	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000437713	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417381	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000430525	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000452612	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000425112	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000417497	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000428584	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000433317	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000430853		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000424161		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000419253		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000454741		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000453632		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000454996		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000428818		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000435348		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000434221		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000437713		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000417381		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000430525		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000452612		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000425112		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000417497		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000428584		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000433317		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000426594	ENST00000426594		ChiTaRS3.1			AA947254	TTC28-AS1	chr22	28358263	+	TTC28-AS1	chr22	28358220	-
intron-intron	ENST00000380393	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000380393	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000216877	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000216877	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000358719	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000358719	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000399903	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000399903	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000425918	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000425918	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000318266	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000318266	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000356147	ENST00000361204		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000356147	ENST00000491541		ChiTaRS3.1			AA948295	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
5CDS-intron	ENST00000394667	ENST00000481796		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394667	ENST00000397832		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394667	ENST00000451172		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394667	ENST00000482126		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000502534	ENST00000481796		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000502534	ENST00000397832		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000502534	ENST00000451172		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000502534	ENST00000482126		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394665	ENST00000481796		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394665	ENST00000397832		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394665	ENST00000451172		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394665	ENST00000482126		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000506397	ENST00000481796		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000506397	ENST00000397832		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000506397	ENST00000451172		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000506397	ENST00000482126		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394668	ENST00000481796		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394668	ENST00000397832		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394668	ENST00000451172		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
5CDS-intron	ENST00000394668	ENST00000482126		ChiTaRS3.1			AA954224	RPL34	chr4	109543745	-	IQCJ	chr3	158826991	-
3UTR-3UTR	ENST00000264158	ENST00000271417		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000529387		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000528703		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000526687		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000469934		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000525740		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000529071		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000539493	ENST00000271417		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000529387		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000528703		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000526687		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000469934		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000525740		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000529071		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-3UTR	ENST00000442034	ENST00000271417		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000529387		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000528703		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000526687		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000469934		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000525740		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000529071		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000487003	ENST00000271417		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000529387		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000528703		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000526687		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000469934		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000525740		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000529071		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000425393	ENST00000271417		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000529387		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000528703		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000526687		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000469934		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000525740		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000529071		ChiTaRS3.1			AA961434	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-3UTR	ENST00000300952	ENST00000300952		ChiTaRS3.1			AA972435	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000300952	ENST00000591446		ChiTaRS3.1			AA972435	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000300952		ChiTaRS3.1			AA972435	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000591446		ChiTaRS3.1			AA972435	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
intron-intron	ENST00000262960	ENST00000429277		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000352360		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000458213		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000263066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000361373		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000372066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000372056		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000310944		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000542786		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000429277		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000352360		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000458213		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000263066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000361373		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000372066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000372056		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000310944		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000542786		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000429277		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000352360		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000458213		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000263066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000361373		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000372066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000372056		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000310944		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000542786		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000429277		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000352360		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000458213		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000263066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000361373		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000372066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000372056		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000310944		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000542786		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000429277		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000352360		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000458213		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000263066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000361373		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000372066		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000372056		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000310944		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000542786		ChiTaRS3.1			AA972615	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
3UTR-3UTR	ENST00000367090	ENST00000367090		ChiTaRS3.1			AA973664	TMEM181	chr6	159056002	-	TMEM181	chr6	159055708	+
3UTR-intron	ENST00000301011	ENST00000338586		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000338515		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000367171		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000367169		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000539706		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000339876		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000367170		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000360049		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000367172		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000403080		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000404076		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000401399		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000404907		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000513543		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
3UTR-intron	ENST00000301011	ENST00000495396		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000338586		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000338515		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000367171		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000367169		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000539706		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000339876		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000367170		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000360049		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000367172		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000403080		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000404076		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000401399		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000404907		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000513543		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-intron	ENST00000452588	ENST00000495396		ChiTaRS3.1			AA976045	ZC3H18	chr16	88698008	-	NFASC	chr1	204853557	-
intron-3CDS	ENST00000358580	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000358580	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000354402	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000354402	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000356738	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000356738	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000357560	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000357560	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000508496	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000508496	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000412920	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000412920	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000511201	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000511201	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3CDS	ENST00000507279	ENST00000334940		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000374417		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000340258		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-3UTR	ENST00000507279	ENST00000472561		ChiTaRS3.1			AA976815	APBB3	chr5	139938125	+	RASSF4	chr10	45485148	-
intron-intron	ENST00000376177	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000376177	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000376177	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000396172	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000396172	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000396172	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000417556	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000417556	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000417556	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000458640	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000458640	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000458640	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000462421	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000462421	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000462421	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415382	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415382	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415382	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453105	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453105	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453105	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000449074	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000449074	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000449074	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552820	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552820	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552820	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000463430	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000463430	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000463430	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000438578	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000438578	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000438578	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415689	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415689	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000415689	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456476	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456476	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456476	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412106	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412106	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412106	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547039	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547039	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547039	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550435	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550435	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550435	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453488	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453488	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453488	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453138	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453138	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000453138	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552288	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552288	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000552288	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000441425	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000441425	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000441425	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456666	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456666	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000456666	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546633	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546633	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546633	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000483957	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000483957	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000483957	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430703	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430703	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430703	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000416863	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000416863	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000416863	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000413678	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000413678	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000413678	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000414440	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000414440	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000414440	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547489	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547489	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000547489	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000551031	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000551031	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000551031	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000468089	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000468089	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000468089	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400293	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400293	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400293	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400296	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400296	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400296	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400295	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400295	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000400295	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000383508	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000383508	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000383508	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548340	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548340	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548340	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548331	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548331	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548331	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000495391	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000495391	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000495391	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000446341	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000446341	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000446341	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548614	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548614	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000548614	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000448296	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000448296	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000448296	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412330	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412330	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000412330	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000445218	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000445218	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000445218	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546637	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546637	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000546637	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000489325	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000489325	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000489325	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000450987	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000450987	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000450987	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000431360	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000431360	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000431360	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430784	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430784	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000430784	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550217	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550217	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000550217	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000470514	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000470514	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000470514	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000549374	ENST00000379388		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000549374	ENST00000484210		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000549374	ENST00000541134		ChiTaRS3.1			AA984135	DDX39B	chr6	2843408	+	HIVEP1	chr6	12022673	+
intron-intron	ENST00000267884	ENST00000263817		ChiTaRS3.1			AA984265	SRP14	chr15	40331369	+	ABCB11	chr2	169869435	-
intron-intron	ENST00000558527	ENST00000263817		ChiTaRS3.1			AA984265	SRP14	chr15	40331369	+	ABCB11	chr2	169869435	-
intron-intron	ENST00000558720	ENST00000263817		ChiTaRS3.1			AA984265	SRP14	chr15	40331369	+	ABCB11	chr2	169869435	-
intron-intron	ENST00000560773	ENST00000263817		ChiTaRS3.1			AA984265	SRP14	chr15	40331369	+	ABCB11	chr2	169869435	-
intron-intron	ENST00000559081	ENST00000263817		ChiTaRS3.1			AA984265	SRP14	chr15	40331369	+	ABCB11	chr2	169869435	-
3UTR-3CDS	ENST00000533507	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3CDS	ENST00000533507	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3CDS	ENST00000533507	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3UTR	ENST00000533507	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3CDS	ENST00000263774	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3CDS	ENST00000263774	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3CDS	ENST00000263774	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
3UTR-3UTR	ENST00000263774	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000529276	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000529276	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000529276	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3UTR	ENST00000529276	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000528192	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000528192	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000528192	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3UTR	ENST00000528192	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534208	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534208	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534208	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3UTR	ENST00000534208	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534716	ENST00000523719		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534716	ENST00000276609		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000534716	ENST00000309536		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3UTR	ENST00000534716	ENST00000520249		ChiTaRS3.1			AA992584	NDUFS3	chr11	47606043	-	SLC26A7	chr8	92406186	-
intron-3CDS	ENST00000369041	ENST00000306434		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-3CDS	ENST00000369041	ENST00000409017		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-intron	ENST00000369041	ENST00000490878		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-3CDS	ENST00000483335	ENST00000306434		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-3CDS	ENST00000483335	ENST00000409017		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-intron	ENST00000483335	ENST00000490878		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000271643	ENST00000306434		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000271643	ENST00000409017		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-intron	ENST00000271643	ENST00000490878		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000369039	ENST00000306434		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000369039	ENST00000409017		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-intron	ENST00000369039	ENST00000490878		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000369038	ENST00000306434		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-3CDS	ENST00000369038	ENST00000409017		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
3UTR-intron	ENST00000369038	ENST00000490878		ChiTaRS3.1			AA992625	ADAMTSL4	chr1	150533101	-	MAT2A	chr2	85769334	-
intron-5UTR	ENST00000382148	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000382148	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382148	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000447367	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000447367	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000447367	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382150	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000382150	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382150	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382152	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000382152	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382152	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000509207	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000509207	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000509207	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382149	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000382149	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000382149	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000359001	ENST00000330753		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-intron	ENST00000359001	ENST00000557419		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
intron-5UTR	ENST00000359001	ENST00000554746		ChiTaRS3.1			AB007865	KCNIP4	chr4	21781637	+	FLRT2	chr14	86087721	+
3UTR-intron	ENST00000078429	ENST00000373566		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000373563		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409480		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409547		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409196		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000409451		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000482666		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
3UTR-intron	ENST00000078429	ENST00000452341		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000373566		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000373563		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409480		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409547		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409196		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000409451		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000482666		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
intron-intron	ENST00000586180	ENST00000452341		ChiTaRS3.1			AB013889	GNA11	chr19	3123738	-	GIGYF2	chr2	233641210	-
5CDS-5UTR	ENST00000370440	ENST00000370440		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000370440	ENST00000347275		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000370440	ENST00000337393		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000370440	ENST00000361321		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000370440	ENST00000467231		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000347275	ENST00000370440		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000347275	ENST00000347275		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000347275	ENST00000337393		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000347275	ENST00000361321		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000347275	ENST00000467231		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000337393	ENST00000370440		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000337393	ENST00000347275		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000337393	ENST00000337393		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000337393	ENST00000361321		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-5UTR	ENST00000337393	ENST00000467231		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000361321	ENST00000370440		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000361321	ENST00000347275		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000361321	ENST00000337393		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000361321	ENST00000361321		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000361321	ENST00000467231		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000467231	ENST00000370440		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000467231	ENST00000347275		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000467231	ENST00000337393		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000467231	ENST00000361321		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
intron-5UTR	ENST00000467231	ENST00000467231		ChiTaRS3.1			AB019255	ZNF644	chr1	91403040	-	ZNF644	chr1	91447931	-
5CDS-intron	ENST00000369061	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369061	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000357555	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000358487	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000356226	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369060	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369059	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000346997	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000457416	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000351936	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000360144	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000369056	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000490349	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-intron	ENST00000359354	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000369061		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000357555		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000358487		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000356226		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000369060		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000369059		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000346997		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000457416		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000351936		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000360144		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000369056		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000490349		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000359354		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
5CDS-intron	ENST00000478859	ENST00000478859		ChiTaRS3.1			AB030075	FGFR2	chr10	123243211	-	FGFR2	chr10	123259078	+
intron-3CDS	ENST00000414209	ENST00000419735		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000414209	ENST00000477775		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000414209	ENST00000318724		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000414209	ENST00000478915		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000414209	ENST00000388807		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000414209	ENST00000472910		ChiTaRS3.1			AB033044	JPX	chrX	73228878	+	ATXN7L1	chr7	105516944	-
intron-intron	ENST00000440491	ENST00000604938		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401010		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000339388		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000369323		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000605317		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000479926		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000604894		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401009		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604938		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401010		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000339388		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000369323		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000605317		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000479926		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604894		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401009		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604938		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401010		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000339388		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000369323		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000605317		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000479926		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604894		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401009		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604938		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401010		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000339388		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000369323		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000605317		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000479926		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604894		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401009		ChiTaRS3.1			AB042555	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000357195	ENST00000304758		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000357195	ENST00000524145		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000357195	ENST00000462114		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000357195	ENST00000371959		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000357195	ENST00000371962		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000357195	ENST00000371958		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000304758		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000524145		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000462114		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000371959		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000371962		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000345514	ENST00000371958		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000304758		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000524145		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000462114		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000371959		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000371962		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
intron-intron	ENST00000443726	ENST00000371958		ChiTaRS3.1			AB043584	BCL11B	chr14	99640190	-	AMOT	chrX	112041593	+
5CDS-intron	ENST00000402198	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000402198	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000402198	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000402198	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000402198	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000402198	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000402466	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000406341	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5CDS-intron	ENST00000407969	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
5UTR-intron	ENST00000302463	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000402198		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000402466		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000406341		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000407969		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000302463		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000488236	ENST00000488236		ChiTaRS3.1			AB051544	SETD5	chr3	9475573	-	SETD5	chr3	9475687	+
intron-intron	ENST00000417172	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000417172	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000417172	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000417172	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361388	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361388	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361388	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000422748	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000422748	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000422748	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000361675	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000361675	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000361675	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361901	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361901	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000361901	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000393118	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000393118	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-3UTR	ENST00000393118	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
3UTR-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000495522	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000495522	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000495522	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000424922	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000424922	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000424922	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000543443	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000543443	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000543443	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000417172		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000466704	ENST00000361388		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000422748		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000361675		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000466704	ENST00000361901		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-3UTR	ENST00000466704	ENST00000393118		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000495522		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000424922		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000543443		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
intron-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			AB062484	CALD1	chr7	134655248	-	CALD1	chr7	134654718	+
5CDS-intron	ENST00000351960	ENST00000254066		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000351960	ENST00000394089		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000351960	ENST00000425707		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000351960	ENST00000394086		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000351960	ENST00000394081		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000351960	ENST00000420042		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000254066		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000394089		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000425707		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000394086		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000394081		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000358965	ENST00000420042		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000254066		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000394089		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000425707		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000394086		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000394081		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
5CDS-intron	ENST00000393695	ENST00000420042		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000254066		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000394089		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000425707		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000394086		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000394081		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-intron	ENST00000543450	ENST00000420042		ChiTaRS3.1			AF012304	NUMA1	chr11	71717081	-	RARA	chr17	38504544	+
intron-3CDS	ENST00000403766	ENST00000488299		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380843		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380851		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000376440	ENST00000488299		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380843		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380851		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000460562	ENST00000488299		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380843		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380851		ChiTaRS3.1			AF023265	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000316836	ENST00000316836		ChiTaRS3.1			AF037364	PNMA1	chr14	74181087	+	PNMA1	chr14	74180950	-
intron-intron	ENST00000444397	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000444397	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000360694	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000418635	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000448077	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000337400	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000311565	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000444397		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000360694		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000418635		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000448077		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000337400		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000311565		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
intron-intron	ENST00000540939	ENST00000540939		ChiTaRS3.1			AF038234	PPARD	chr6	35349721	-	PPARD	chr6	35348725	+
5CDS-intron	ENST00000370331	ENST00000399298		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000370331	ENST00000399293		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000370331	ENST00000507507		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000540033	ENST00000399298		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000540033	ENST00000399293		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000540033	ENST00000507507		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000543509	ENST00000399298		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000543509	ENST00000399293		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5CDS-intron	ENST00000543509	ENST00000507507		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5UTR-intron	ENST00000491940	ENST00000399298		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5UTR-intron	ENST00000491940	ENST00000399293		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
5UTR-intron	ENST00000491940	ENST00000507507		ChiTaRS3.1			AF042345	EVI5	chr1	93089733	-	TMEM26	chr10	63200869	+
intron-3UTR	ENST00000397517	ENST00000159111		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000397517	ENST00000381759		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000397517	ENST00000536461		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000397517	ENST00000592175		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000539966	ENST00000159111		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000539966	ENST00000381759		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000539966	ENST00000536461		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000539966	ENST00000592175		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000481288	ENST00000159111		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000481288	ENST00000381759		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000481288	ENST00000536461		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000481288	ENST00000592175		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000376547	ENST00000159111		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000376547	ENST00000381759		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3UTR	ENST00000376547	ENST00000536461		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-intron	ENST00000376547	ENST00000592175		ChiTaRS3.1			AF052144	STK24	chr13	99115980	-	KDM4B	chr19	5151703	+
intron-3CDS	ENST00000435667	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000435667	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000435667	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000440156	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000440156	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000455077	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000455077	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000437179	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000437179	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000388777	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000388777	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000454389	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000454389	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000446700	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000446700	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000425128	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000425128	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000445684	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000445684	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000428386	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000428386	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000435667		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000440156		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000455077		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-3CDS	ENST00000295736	ENST00000437179		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000388777		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000454389		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000446700		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000425128		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000445684		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000428386		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-5UTR	ENST00000295736	ENST00000295736		ChiTaRS3.1			AF053755	SLC4A7	chr3	27478997	+	SLC4A7	chr3	27478932	-
intron-intron	ENST00000444129	ENST00000361035		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000444129	ENST00000325945		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000444129	ENST00000482991		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000361035		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000325945		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000421138	ENST00000482991		ChiTaRS3.1			AF062709	RECQL	chr12	21654546	+	HAO2	chr1	119928261	+
intron-intron	ENST00000367990	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000411990		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367080		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367079		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000545806		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000541914		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000473310		ChiTaRS3.1			AF063569	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
5UTR-intron	ENST00000264258	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000273854		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000432638		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000354839		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000511294		ChiTaRS3.1			AF063576	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-3UTR	ENST00000379705	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379705		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379681		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000338947		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379679		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000426868		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000379673		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000355779		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000358477		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000447043		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000494529		ChiTaRS3.1			AF063824	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379705		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379681		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000338947		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379679		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000426868		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000379673		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000355779		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000358477		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000447043		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000494529		ChiTaRS3.1			AF063825	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3CDS	ENST00000514529	ENST00000380358		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000358181		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000330494		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000570758		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000321871	ENST00000380358		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000358181		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000330494		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000570758		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000393130	ENST00000380358		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000358181		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000330494		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000570758		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000508711	ENST00000380358		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000358181		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000330494		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000570758		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000515826	ENST00000380358		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000358181		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000330494		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000570758		ChiTaRS3.1			AF064844	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000371756	ENST00000371756		ChiTaRS3.1			AF068195	UBAC1	chr9	138847228	+	UBAC1	chr9	138847179	-
intron-intron	ENST00000371756	ENST00000465873		ChiTaRS3.1			AF068195	UBAC1	chr9	138847228	+	UBAC1	chr9	138847179	-
intron-3CDS	ENST00000465873	ENST00000371756		ChiTaRS3.1			AF068195	UBAC1	chr9	138847228	+	UBAC1	chr9	138847179	-
intron-intron	ENST00000465873	ENST00000465873		ChiTaRS3.1			AF068195	UBAC1	chr9	138847228	+	UBAC1	chr9	138847179	-
intron-3CDS	ENST00000366595	ENST00000380649		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000366595	ENST00000457468		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-intron	ENST00000366595	ENST00000461025		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000264187	ENST00000380649		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3CDS	ENST00000264187	ENST00000457468		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-intron	ENST00000264187	ENST00000461025		ChiTaRS3.1			AF074629	NID1	chr1	236206197	+	HADHA	chr2	26437998	-
intron-3UTR	ENST00000302053	ENST00000215912		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000302053	ENST00000441972		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000302053	ENST00000487265		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000302053	ENST00000402249		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000403106	ENST00000215912		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-3UTR	ENST00000403106	ENST00000441972		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000403106	ENST00000487265		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000403106	ENST00000402249		ChiTaRS3.1			AF074639	FGA	chr4	155506812	+	PIK3IP1	chr22	31678705	-
intron-intron	ENST00000355621	ENST00000439155		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000367429		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000496761		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000359637		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000439155		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000367429		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000496761		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000359637		ChiTaRS3.1			AF074645	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-3UTR	ENST00000372070	ENST00000265350		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000372070	ENST00000467535		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000372070	ENST00000409312		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000372070	ENST00000409060		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000265350		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000351829	ENST00000467535		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000351829	ENST00000409312		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000351829	ENST00000409060		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000265350		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-5UTR	ENST00000471651	ENST00000467535		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-3UTR	ENST00000471651	ENST00000409312		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
3UTR-intron	ENST00000471651	ENST00000409060		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000265350		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-5UTR	ENST00000473038	ENST00000467535		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-3UTR	ENST00000473038	ENST00000409312		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
intron-intron	ENST00000473038	ENST00000409060		ChiTaRS3.1			AF074677	AKR1A1	chr1	46033008	-	MED20	chr6	41874670	-
5UTR-intron	ENST00000264258	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000264258	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409000	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5UTR-intron	ENST00000409028	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409320	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409733	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409650	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409038	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000273854		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000432638		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000354839		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
intron-intron	ENST00000409711	ENST00000511294		ChiTaRS3.1			AF075299	RPL31	chr2	101618755	-	EPHA5	chr4	66439408	+
5CDS-5UTR	ENST00000578681	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000578681	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000578681	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000578681	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000583590	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000583590	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000583590	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000583590	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000359353	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000359353	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000359353	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000359353	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000389924	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000389924	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000389924	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000389924	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000457800	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-5UTR	ENST00000457800	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000457800	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
5CDS-intron	ENST00000457800	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-5UTR	ENST00000582985	ENST00000334350		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-5UTR	ENST00000582985	ENST00000394501		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-intron	ENST00000582985	ENST00000568475		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
intron-intron	ENST00000582985	ENST00000567672		ChiTaRS3.1			AF078844	DDX42	chr17	61895119	-	MT1F	chr16	56691909	+
3UTR-intron	ENST00000466444	ENST00000539909		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000466444	ENST00000286621		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000466444	ENST00000372734		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000466444	ENST00000541550		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000466444	ENST00000467840		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
5CDS-intron	ENST00000392526	ENST00000539909		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
5CDS-intron	ENST00000392526	ENST00000286621		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
5CDS-intron	ENST00000392526	ENST00000372734		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
5CDS-intron	ENST00000392526	ENST00000541550		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
5CDS-intron	ENST00000392526	ENST00000467840		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000487832	ENST00000539909		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000487832	ENST00000286621		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000487832	ENST00000372734		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000487832	ENST00000541550		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
3UTR-intron	ENST00000487832	ENST00000467840		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-intron	ENST00000517800	ENST00000539909		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-intron	ENST00000517800	ENST00000286621		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-intron	ENST00000517800	ENST00000372734		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-intron	ENST00000517800	ENST00000541550		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-intron	ENST00000517800	ENST00000467840		ChiTaRS3.1			AF092134	RWDD1	chr6	116914431	+	ADK	chr10	75960241	+
intron-3CDS	ENST00000299853	ENST00000348547		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000299853	ENST00000357394		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000299853	ENST00000279052		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000299853	ENST00000447986		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-intron	ENST00000299853	ENST00000482338		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564209	ENST00000348547		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564209	ENST00000357394		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564209	ENST00000279052		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564209	ENST00000447986		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-intron	ENST00000564209	ENST00000482338		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000418581	ENST00000348547		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000418581	ENST00000357394		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000418581	ENST00000279052		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000418581	ENST00000447986		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-intron	ENST00000418581	ENST00000482338		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000359210	ENST00000348547		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000359210	ENST00000357394		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000359210	ENST00000279052		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000359210	ENST00000447986		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-intron	ENST00000359210	ENST00000482338		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564256	ENST00000348547		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564256	ENST00000357394		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564256	ENST00000279052		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000564256	ENST00000447986		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-intron	ENST00000564256	ENST00000482338		ChiTaRS3.1			AF116614	POLR3E	chr16	22331976	-	ERGIC3	chr20	34129877	+
intron-3CDS	ENST00000402696	ENST00000295897		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000415165		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000503124		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000509063		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000401494		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000402696	ENST00000505649		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000295897		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000415165		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000503124		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000509063		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000401494		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000264998	ENST00000505649		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000295897		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000415165		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000503124		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000509063		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000401494		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000475382	ENST00000505649		ChiTaRS3.1			AF116645	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-5UTR	ENST00000492220	ENST00000333646		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000492220	ENST00000374102		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000492220	ENST00000374080		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-intron	ENST00000492220	ENST00000462984		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000401000	ENST00000333646		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000401000	ENST00000374102		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000401000	ENST00000374080		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-intron	ENST00000401000	ENST00000462984		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000539519	ENST00000333646		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000539519	ENST00000374102		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000539519	ENST00000374080		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-intron	ENST00000539519	ENST00000462984		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369067	ENST00000333646		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369067	ENST00000374102		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369067	ENST00000374080		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-intron	ENST00000369067	ENST00000462984		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369068	ENST00000333646		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369068	ENST00000374102		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-5UTR	ENST00000369068	ENST00000374080		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
intron-intron	ENST00000369068	ENST00000462984		ChiTaRS3.1			AF117755	RPRD2	chr1	150407357	-	MED12	chrX	70338573	+
3UTR-3CDS	ENST00000534336	ENST00000233242		ChiTaRS3.1			AF119905	MALAT1	chr11	65269439	-	APOB	chr2	21229276	-
3UTR-intron	ENST00000534336	ENST00000399256		ChiTaRS3.1			AF119905	MALAT1	chr11	65269439	-	APOB	chr2	21229276	-
3UTR-3UTR	ENST00000244040	ENST00000244040		ChiTaRS3.1			AF125104	RAB22A	chr20	56935124	+	RAB22A	chr20	56935924	-
3UTR-intron	ENST00000244040	ENST00000488949		ChiTaRS3.1			AF125104	RAB22A	chr20	56935124	+	RAB22A	chr20	56935924	-
intron-3UTR	ENST00000488949	ENST00000244040		ChiTaRS3.1			AF125104	RAB22A	chr20	56935124	+	RAB22A	chr20	56935924	-
intron-intron	ENST00000488949	ENST00000488949		ChiTaRS3.1			AF125104	RAB22A	chr20	56935124	+	RAB22A	chr20	56935924	-
intron-intron	ENST00000592273	ENST00000308482		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000592273	ENST00000468950		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000592273	ENST00000289175		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000592273	ENST00000244815		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000592273	ENST00000392000		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000242784	ENST00000308482		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000242784	ENST00000468950		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000242784	ENST00000289175		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000242784	ENST00000244815		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000242784	ENST00000392000		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000588213	ENST00000308482		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000588213	ENST00000468950		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000588213	ENST00000289175		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000588213	ENST00000244815		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000588213	ENST00000392000		ChiTaRS3.1			AF130054	C19orf43	chr19	12841534	+	LRRFIP1	chr2	238672595	+
intron-intron	ENST00000325110	ENST00000372486		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000372483		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000459968		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000482347		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000372481		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000372480		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000325110	ENST00000486391		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000372486		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000372483		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000459968		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000482347		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000372481		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000372480		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000433297	ENST00000486391		ChiTaRS3.1			AF130074	HMGCS1	chr5	43302564	+	NTMT1	chr9	132395217	+
intron-intron	ENST00000187762	ENST00000216294		ChiTaRS3.1			CD657759	TMEM38A	chr19	16789235	-	SNAPC1	chr14	62255964	-
3UTR-3UTR	ENST00000258418	ENST00000258418		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000410084		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000409788		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
3UTR-intron	ENST00000258418	ENST00000484398		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000410084	ENST00000258418		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000410084		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000409788		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000410084	ENST00000484398		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000409788	ENST00000258418		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000410084		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000409788		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000409788	ENST00000484398		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-3UTR	ENST00000484398	ENST00000258418		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000410084		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000409788		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
intron-intron	ENST00000484398	ENST00000484398		ChiTaRS3.1			AF151824	CAB39	chr2	231683960	+	CAB39	chr2	231683565	-
5CDS-intron	ENST00000370939	ENST00000306749		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
5CDS-intron	ENST00000370939	ENST00000579758		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
3UTR-intron	ENST00000323557	ENST00000306749		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
3UTR-intron	ENST00000323557	ENST00000579758		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
3UTR-intron	ENST00000244426	ENST00000306749		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
3UTR-intron	ENST00000244426	ENST00000579758		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
intron-intron	ENST00000461222	ENST00000306749		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
intron-intron	ENST00000461222	ENST00000579758		ChiTaRS3.1			AF155114	FBXO9	chr6	52962684	+	FASN	chr17	80037572	-
intron-3UTR	ENST00000447998	ENST00000447998		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000447998	ENST00000424236		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000447998	ENST00000446090		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-intron	ENST00000447998	ENST00000521093		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000424236	ENST00000447998		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000424236	ENST00000424236		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000424236	ENST00000446090		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-intron	ENST00000424236	ENST00000521093		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000446090	ENST00000447998		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000446090	ENST00000424236		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000446090	ENST00000446090		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-intron	ENST00000446090	ENST00000521093		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000521093	ENST00000447998		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000521093	ENST00000424236		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-3UTR	ENST00000521093	ENST00000446090		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-intron	ENST00000521093	ENST00000521093		ChiTaRS3.1			AF156165	DCTN4	chr5	150090527	+	DCTN4	chr5	150090462	-
intron-5UTR	ENST00000265260	ENST00000170447		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000265260	ENST00000411987		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000265260	ENST00000448482		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000469941	ENST00000170447		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000469941	ENST00000411987		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000469941	ENST00000448482		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000296024	ENST00000170447		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000296024	ENST00000411987		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000296024	ENST00000448482		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000486406	ENST00000170447		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000486406	ENST00000411987		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
intron-5UTR	ENST00000486406	ENST00000448482		ChiTaRS3.1			AF161555	PCNP	chr3	101304669	+	MKRN2	chr3	12598595	+
3UTR-intron	ENST00000415930	ENST00000316623		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000415930	ENST00000561429		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000415930	ENST00000560355		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000356487	ENST00000316623		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000356487	ENST00000561429		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000356487	ENST00000560355		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000586425	ENST00000316623		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000586425	ENST00000561429		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
3UTR-intron	ENST00000586425	ENST00000560355		ChiTaRS3.1			AF187554	GPI	chr19	34891143	+	FBN1	chr15	48712787	+
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AF190155	MTHFD1L	chr6	151329970	+	MTHFD1L	chr6	151324685	+
intron-intron	ENST00000367088	ENST00000353364		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367088	ENST00000280377		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367088	ENST00000393654		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367088	ENST00000550632		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367088	ENST00000312635		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367089	ENST00000353364		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367089	ENST00000280377		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367089	ENST00000393654		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367089	ENST00000550632		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367089	ENST00000312635		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367085	ENST00000353364		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367085	ENST00000280377		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367085	ENST00000393654		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367085	ENST00000550632		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-intron	ENST00000367085	ENST00000312635		ChiTaRS3.1			AF236714	DYNLT1	chr6	159058652	-	USP15	chr12	62698419	+
intron-5UTR	ENST00000256544	ENST00000329759		ChiTaRS3.1			AF289585	KATNBL1	chr15	34495531	-	FAM43A	chr3	194407276	+
intron-5UTR	ENST00000560915	ENST00000329759		ChiTaRS3.1			AF289585	KATNBL1	chr15	34495531	-	FAM43A	chr3	194407276	+
intron-5UTR	ENST00000261699	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000261699	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000267436	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000267436	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000421284	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000421284	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000555423	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000555423	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000555610	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000555610	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000556393	ENST00000393158		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-5UTR	ENST00000556393	ENST00000302251		ChiTaRS3.1			AF335584	L2HGDH	chr14	50710269	+	PDGFD	chr11	104034738	-
intron-intron	ENST00000418820	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000418820	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000593948	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000593948	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000270077	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000270077	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000291752	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000291752	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000443718	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000443718	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000244293	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000244293	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000596730	ENST00000355451		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000596730	ENST00000460110		ChiTaRS3.1			AF370435	PSG9	chr19	43772073	+	NUDCD3	chr7	44507465	+
intron-intron	ENST00000323146	ENST00000323146		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
intron-intron	ENST00000323146	ENST00000508770		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
intron-intron	ENST00000323146	ENST00000514199		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
intron-intron	ENST00000508770	ENST00000323146		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
intron-intron	ENST00000508770	ENST00000508770		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
intron-intron	ENST00000508770	ENST00000514199		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
5UTR-intron	ENST00000514199	ENST00000323146		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
5UTR-intron	ENST00000514199	ENST00000508770		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
5UTR-intron	ENST00000514199	ENST00000514199		ChiTaRS3.1			AF445025	SLC35A4	chr5	139944526	-	SLC35A4	chr5	139944476	+
3UTR-3UTR	ENST00000287272	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
3UTR-3UTR	ENST00000287272	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
3UTR-3UTR	ENST00000287272	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
3UTR-intron	ENST00000287272	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
5CDS-3UTR	ENST00000453357	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
5CDS-3UTR	ENST00000453357	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
5CDS-3UTR	ENST00000453357	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
5CDS-intron	ENST00000453357	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000404895	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000404895	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000404895	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-intron	ENST00000404895	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000420357	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000420357	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000420357	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-intron	ENST00000420357	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000416672	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000416672	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000416672	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-intron	ENST00000416672	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000449677	ENST00000258991		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000449677	ENST00000583097		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-3UTR	ENST00000449677	ENST00000584379		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-intron	ENST00000449677	ENST00000581812		ChiTaRS3.1			AF466364	UNC5D	chr8	35652174	+	TEX2	chr17	62225913	-
intron-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548114	OFCC1	chr6	9849354	+	OFCC1	chr6	9845827	-
intron-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548114	OFCC1	chr6	9849354	+	OFCC1	chr6	9845827	-
intron-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548114	OFCC1	chr6	9849354	+	OFCC1	chr6	9845827	-
intron-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548114	OFCC1	chr6	9849354	+	OFCC1	chr6	9845827	-
3UTR-intron	ENST00000328024	ENST00000362582		ChiTaRS3.1			AI000285	RAB11B	chr19	8469059	-	SNHG17	chr20	37049380	+
intron-intron	ENST00000601897	ENST00000362582		ChiTaRS3.1			AI000285	RAB11B	chr19	8469059	-	SNHG17	chr20	37049380	+
intron-intron	ENST00000594216	ENST00000362582		ChiTaRS3.1			AI000285	RAB11B	chr19	8469059	-	SNHG17	chr20	37049380	+
3UTR-3CDS	ENST00000398485	ENST00000222005		ChiTaRS3.1			AI004584	PAX1	chr20	21695719	-	CDC37	chr19	10506788	-
intron-3CDS	ENST00000460221	ENST00000222005		ChiTaRS3.1			AI004584	PAX1	chr20	21695719	-	CDC37	chr19	10506788	-
3UTR-3CDS	ENST00000444366	ENST00000222005		ChiTaRS3.1			AI004584	PAX1	chr20	21695719	-	CDC37	chr19	10506788	-
intron-3UTR	ENST00000380518	ENST00000380518		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000380518	ENST00000493991		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000380518	ENST00000337299		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-3UTR	ENST00000493991	ENST00000380518		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000493991	ENST00000493991		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000493991	ENST00000337299		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-3UTR	ENST00000337299	ENST00000380518		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000337299	ENST00000493991		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-intron	ENST00000337299	ENST00000337299		ChiTaRS3.1			AI015105	COL2A1	chr12	48366854	+	COL2A1	chr12	48366970	-
intron-3UTR	ENST00000264080	ENST00000553116		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3UTR	ENST00000264080	ENST00000360299		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-intron	ENST00000264080	ENST00000448789		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3UTR	ENST00000598626	ENST00000553116		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3UTR	ENST00000598626	ENST00000360299		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-intron	ENST00000598626	ENST00000448789		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3UTR	ENST00000430424	ENST00000553116		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3UTR	ENST00000430424	ENST00000360299		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-intron	ENST00000430424	ENST00000448789		ChiTaRS3.1			AI015985	GPR108	chr19	6730116	+	RAB5B	chr12	56387492	-
intron-3CDS	ENST00000537031	ENST00000525975		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000537031	ENST00000379016		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000537031	ENST00000303296		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000537031	ENST00000456517		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000537031	ENST00000534262		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000310594	ENST00000525975		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000310594	ENST00000379016		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000310594	ENST00000303296		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000310594	ENST00000456517		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000310594	ENST00000534262		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000397196	ENST00000525975		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000397196	ENST00000379016		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000397196	ENST00000303296		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000397196	ENST00000456517		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000397196	ENST00000534262		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000542408	ENST00000525975		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000542408	ENST00000379016		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000542408	ENST00000303296		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000542408	ENST00000456517		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000542408	ENST00000534262		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000545747	ENST00000525975		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000545747	ENST00000379016		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000545747	ENST00000303296		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-3CDS	ENST00000545747	ENST00000456517		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000545747	ENST00000534262		ChiTaRS3.1			AI025085	WNT5B	chr12	1745936	+	HIPK3	chr11	33373788	-
intron-intron	ENST00000409598	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409598	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409598	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409598	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000424281	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000424281	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000424281	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000424281	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000304527	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000304527	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000304527	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000304527	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000455740	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000455740	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000455740	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000455740	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409252	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409252	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409252	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000409252	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000514152	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000514152	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000514152	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000514152	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000427414	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000427414	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000427414	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000427414	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000604030	ENST00000469796		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000604030	ENST00000340800		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000604030	ENST00000348502		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000604030	ENST00000504383		ChiTaRS3.1			AI038265	SH3D19	chr4	152075164	+	ACSL4	chrX	108960709	+
intron-intron	ENST00000227752	ENST00000578312		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000262394		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000579733		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000583193		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000581185		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000427287		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000227752	ENST00000348811		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000578312		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000262394		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000579733		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000583193		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000581185		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000427287		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000533700	ENST00000348811		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000578312		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000262394		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000579733		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000583193		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000581185		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000427287		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000545409	ENST00000348811		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000578312		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000262394		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000579733		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000583193		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000581185		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000427287		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
intron-intron	ENST00000541785	ENST00000348811		ChiTaRS3.1			AI040205	IL10RA	chr11	117857732	-	WSB1	chr17	25622015	-
Frame-shit	ENST00000565886	ENST00000272139		ChiTaRS3.1			AI051194	TGFBR3L	chr19	7982988	-	C1orf35	chr1	228290204	+
5CDS-5UTR	ENST00000565886	ENST00000472617		ChiTaRS3.1			AI051194	TGFBR3L	chr19	7982988	-	C1orf35	chr1	228290204	+
3UTR-3CDS	ENST00000564348	ENST00000272139		ChiTaRS3.1			AI051194	TGFBR3L	chr19	7982988	-	C1orf35	chr1	228290204	+
3UTR-5UTR	ENST00000564348	ENST00000472617		ChiTaRS3.1			AI051194	TGFBR3L	chr19	7982988	-	C1orf35	chr1	228290204	+
5CDS-3UTR	ENST00000313833	ENST00000278412		ChiTaRS3.1			AI074575	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
3UTR-3UTR	ENST00000555087	ENST00000278412		ChiTaRS3.1			AI074575	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
5CDS-3UTR	ENST00000440021	ENST00000278412		ChiTaRS3.1			AI074575	FBXO34	chr14	55817148	-	SSRP1	chr11	57093836	+
intron-3UTR	ENST00000541515	ENST00000394196		ChiTaRS3.1			AI078265	LUC7L2	chr7	139030246	-	CHD2	chr15	93568126	-
intron-intron	ENST00000541515	ENST00000557381		ChiTaRS3.1			AI078265	LUC7L2	chr7	139030246	-	CHD2	chr15	93568126	-
intron-intron	ENST00000541515	ENST00000420239		ChiTaRS3.1			AI078265	LUC7L2	chr7	139030246	-	CHD2	chr15	93568126	-
intron-intron	ENST00000541515	ENST00000536619		ChiTaRS3.1			AI078265	LUC7L2	chr7	139030246	-	CHD2	chr15	93568126	-
intron-intron	ENST00000541515	ENST00000554122		ChiTaRS3.1			AI078265	LUC7L2	chr7	139030246	-	CHD2	chr15	93568126	-
intron-3CDS	ENST00000366603	ENST00000354185		ChiTaRS3.1			AI079824	ARID4B	chr1	235424013	-	DDX21	chr10	70733401	+
intron-3CDS	ENST00000264183	ENST00000354185		ChiTaRS3.1			AI079824	ARID4B	chr1	235424013	-	DDX21	chr10	70733401	+
intron-3CDS	ENST00000349213	ENST00000354185		ChiTaRS3.1			AI079824	ARID4B	chr1	235424013	-	DDX21	chr10	70733401	+
intron-3CDS	ENST00000494543	ENST00000354185		ChiTaRS3.1			AI079824	ARID4B	chr1	235424013	-	DDX21	chr10	70733401	+
intron-intron	ENST00000441008	ENST00000324350		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000441008	ENST00000373191		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000441008	ENST00000397828		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000441008	ENST00000246314		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000441008	ENST00000471099		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000217333	ENST00000324350		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000217333	ENST00000373191		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000217333	ENST00000397828		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000217333	ENST00000246314		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000217333	ENST00000471099		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000400441	ENST00000324350		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000400441	ENST00000373191		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000400441	ENST00000397828		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000400441	ENST00000246314		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000400441	ENST00000471099		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000466091	ENST00000324350		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000466091	ENST00000373191		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000466091	ENST00000397828		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000466091	ENST00000246314		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-intron	ENST00000466091	ENST00000471099		ChiTaRS3.1			AI086445	MROH8	chr20	35759788	-	AGO3	chr1	36399264	-
intron-3UTR	ENST00000533902	ENST00000344120		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-intron	ENST00000533902	ENST00000434127		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-intron	ENST00000533902	ENST00000503582		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-3UTR	ENST00000280258	ENST00000344120		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-intron	ENST00000280258	ENST00000434127		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-intron	ENST00000280258	ENST00000503582		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-3UTR	ENST00000441050	ENST00000344120		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-intron	ENST00000441050	ENST00000434127		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
3UTR-intron	ENST00000441050	ENST00000503582		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-3UTR	ENST00000531521	ENST00000344120		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-intron	ENST00000531521	ENST00000434127		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-intron	ENST00000531521	ENST00000503582		ChiTaRS3.1			AI086914	PRSS23	chr11	86519939	-	SPRY4	chr5	141691529	+
intron-3UTR	ENST00000367858	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000367858	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000524929	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000524929	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000413996	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000413996	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000237305	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000237305	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000367857	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000367857	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000528577	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000528577	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000475719	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000475719	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000489458	ENST00000542955		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
intron-3UTR	ENST00000489458	ENST00000269593		ChiTaRS3.1			AI090154	SGK1	chr6	134490471	+	IGFBP4	chr17	38613171	-
5CDS-intron	ENST00000332180	ENST00000310301		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
5CDS-intron	ENST00000332180	ENST00000395969		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
5CDS-intron	ENST00000332180	ENST00000466017		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000310301		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000395969		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000466017		ChiTaRS3.1			AI093764	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
3UTR-intron	ENST00000381477	ENST00000537330		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
3UTR-intron	ENST00000381477	ENST00000570891		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
3UTR-intron	ENST00000381477	ENST00000306801		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
3UTR-intron	ENST00000381477	ENST00000544334		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
3UTR-intron	ENST00000381477	ENST00000575542		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381476	ENST00000537330		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381476	ENST00000570891		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381476	ENST00000306801		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381476	ENST00000544334		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381476	ENST00000575542		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381471	ENST00000537330		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381471	ENST00000570891		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381471	ENST00000306801		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381471	ENST00000544334		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000381471	ENST00000575542		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000490518	ENST00000537330		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000490518	ENST00000570891		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000490518	ENST00000306801		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000490518	ENST00000544334		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000490518	ENST00000575542		ChiTaRS3.1			AI094034	MLANA	chr9	5909513	-	RPTOR	chr17	78578839	+
intron-intron	ENST00000367990	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000411990		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367080		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367079		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000545806		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000541914		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000473310		ChiTaRS3.1			AI110694	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000355621	ENST00000439155		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000367429		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000496761		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000355621	ENST00000359637		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000439155		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000367429		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000496761		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000473814	ENST00000359637		ChiTaRS3.1			AI110738	UBE2H	chr7	129577896	+	CFH	chr1	196626550	-
intron-intron	ENST00000245907	ENST00000444837		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000569500		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000379811		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000245907	ENST00000568675		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000444837		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000569500		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000379811		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
intron-intron	ENST00000599668	ENST00000568675		ChiTaRS3.1			AI110774	C3	chr19	6684602	-	MT1G	chr16	56701556	-
3UTR-3CDS	ENST00000303375	ENST00000279550		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000303375	ENST00000228251		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-5UTR	ENST00000303375	ENST00000546164		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000446119	ENST00000279550		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-3CDS	ENST00000446119	ENST00000228251		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
3UTR-5UTR	ENST00000446119	ENST00000546164		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-3CDS	ENST00000580916	ENST00000279550		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-3CDS	ENST00000580916	ENST00000228251		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-5UTR	ENST00000580916	ENST00000546164		ChiTaRS3.1			AI110784	MRC2	chr17	60770479	+	YBX3	chr12	10854691	-
intron-3CDS	ENST00000599539	ENST00000302053		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000599539	ENST00000403106		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000339471	ENST00000302053		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000339471	ENST00000403106		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000251453	ENST00000302053		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000251453	ENST00000403106		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000601655	ENST00000302053		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000601655	ENST00000403106		ChiTaRS3.1			AI114445	RPS16	chr19	39926560	+	FGA	chr4	155507364	-
intron-3CDS	ENST00000419748	ENST00000381096		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000419748	ENST00000512583		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000419748	ENST00000305107		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-5UTR	ENST00000419748	ENST00000506580		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3CDS	ENST00000303236	ENST00000381096		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000303236	ENST00000512583		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000303236	ENST00000305107		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-5UTR	ENST00000303236	ENST00000506580		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3CDS	ENST00000470706	ENST00000381096		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000470706	ENST00000512583		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-3UTR	ENST00000470706	ENST00000305107		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
intron-5UTR	ENST00000470706	ENST00000506580		ChiTaRS3.1			AI114505	EIF2AK3	chr2	88922517	+	UGT2B4	chr4	70346360	-
In-frame	ENST00000295897	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000295897	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000295897	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000295897	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000295897	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
5CDS-3UTR	ENST00000295897	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000415165	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000415165	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000415165	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000415165	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000415165	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
5CDS-3UTR	ENST00000415165	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000503124	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000503124	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000503124	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000503124	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000503124	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
5CDS-3UTR	ENST00000503124	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000509063	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000509063	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000509063	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000509063	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000509063	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
5CDS-3UTR	ENST00000509063	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000401494	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000401494	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000401494	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000401494	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
In-frame	ENST00000401494	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
5CDS-3UTR	ENST00000401494	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3CDS	ENST00000505649	ENST00000295897		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3CDS	ENST00000505649	ENST00000415165		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3CDS	ENST00000505649	ENST00000503124		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3CDS	ENST00000505649	ENST00000509063		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3CDS	ENST00000505649	ENST00000401494		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
3UTR-3UTR	ENST00000505649	ENST00000505649		ChiTaRS3.1			AI114654	ALB	chr4	74285332	+	ALB	chr4	74279251	+
intron-3CDS	ENST00000532317	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000532317	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000532317	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000526033	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000526033	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000526033	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000393346	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000393346	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000393346	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000528398	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000528398	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000528398	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000356360	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000356360	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000356360	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000528411	ENST00000402696		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000528411	ENST00000264998		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000528411	ENST00000475382		ChiTaRS3.1			AI114794	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-intron	ENST00000337907	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000337907	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000337907	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000337907	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000377464	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000377464	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000377464	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000377464	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400907	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400907	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400907	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400907	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400908	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400908	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400908	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000400908	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000476556	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000476556	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000476556	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000476556	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000460659	ENST00000556485		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000460659	ENST00000354454		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000460659	ENST00000548766		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000460659	ENST00000547044		ChiTaRS3.1			AI122684	RERE	chr1	8420794	-	LRMP	chr12	25233570	+
intron-intron	ENST00000338586	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000338515	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000367171	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000367169	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000539706	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000339876	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000367170	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000360049	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000367172	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000403080	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000404076	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000401399	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000404907	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000513543	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-intron	ENST00000495396	ENST00000330978		ChiTaRS3.1			AI125135	NFASC	chr1	204832005	-	BOLA2	chr16	29821578	+
intron-5UTR	ENST00000343348	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000343348	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000343348	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000343348	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000343348	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000343348	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000257414	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000257414	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000257414	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000257414	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000257414	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000257414	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000510263	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000510263	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000510263	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000510263	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000510263	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000510263	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000513137	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000513137	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000513137	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000513137	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000513137	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000513137	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000282394	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000282394	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000282394	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000282394	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000282394	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000282394	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000503865	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000503865	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503865	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503865	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503865	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503865	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000503962	ENST00000361905		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-5UTR	ENST00000503962	ENST00000527636		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503962	ENST00000527575		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503962	ENST00000334310		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503962	ENST00000361985		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000503962	ENST00000526600		ChiTaRS3.1			AI126955	SEMA6A	chr5	115781995	+	TEAD1	chr11	12696339	+
intron-intron	ENST00000604938	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000604938		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000401010		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000339388		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000369323		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000605317		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000479926		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000604894		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000401009		ChiTaRS3.1			AI128644	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
3UTR-3UTR	ENST00000411641	ENST00000377795		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-3UTR	ENST00000411641	ENST00000353334		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-intron	ENST00000411641	ENST00000524315		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-intron	ENST00000411641	ENST00000009530		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-3UTR	ENST00000273784	ENST00000377795		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-3UTR	ENST00000273784	ENST00000353334		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-intron	ENST00000273784	ENST00000524315		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
3UTR-intron	ENST00000273784	ENST00000009530		ChiTaRS3.1			AI133275	AHSG	chr3	186338913	-	CD74	chr5	149781594	-
intron-intron	ENST00000487941	ENST00000358621		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000357447		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000378503		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000342409		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000493380		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000475141		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000487941	ENST00000492155		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000358621		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000357447		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000378503		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000342409		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000493380		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000475141		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000434966	ENST00000492155		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000358621		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000357447		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000378503		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000342409		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000493380		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000475141		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000420087	ENST00000492155		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000358621		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000357447		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000378503		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000342409		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000493380		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000475141		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000494421	ENST00000492155		ChiTaRS3.1			AI133694	CT45A4	chrX	134874737	-	FRMD4A	chr10	13720471	-
intron-intron	ENST00000361189	ENST00000374741		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000361189	ENST00000573786		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000361189	ENST00000571503		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000361557	ENST00000374741		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000361557	ENST00000573786		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000361557	ENST00000571503		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000511624	ENST00000374741		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000511624	ENST00000573786		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000511624	ENST00000571503		ChiTaRS3.1			AI139414	PJA2	chr5	108671304	+	OXLD1	chr17	79633383	+
intron-intron	ENST00000550418	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000550418	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000550418	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000550418	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000550418	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000553186	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000553186	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000553186	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000553186	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000553186	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000547372	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000547372	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000547372	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000547372	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000547372	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000422070	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000422070	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000422070	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000422070	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000422070	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000535565	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000535565	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000535565	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000535565	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000535565	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547427	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547427	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547427	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547427	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547427	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000552089	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000552089	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000552089	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000552089	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000552089	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547338	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547338	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547338	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547338	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000547338	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000436368	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000436368	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000436368	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000436368	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-intron	ENST00000436368	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000311745	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000311745	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000311745	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000311745	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000311745	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000355637	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000355637	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000355637	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000355637	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000355637	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000340209	ENST00000541742		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000340209	ENST00000490107		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000340209	ENST00000388985		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000340209	ENST00000366517		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
3UTR-intron	ENST00000340209	ENST00000403792		ChiTaRS3.1			AI141205	RBFOX1	chr16	7760885	-	SMYD3	chr1	246115762	-
intron-3CDS	ENST00000398411	ENST00000398411		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000398411	ENST00000376925		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000398411	ENST00000398409		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000376925	ENST00000398411		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000376925	ENST00000376925		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000376925	ENST00000398409		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000398409	ENST00000398411		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000398409	ENST00000376925		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3CDS	ENST00000398409	ENST00000398409		ChiTaRS3.1			AI142545	CST3	chr20	23614567	+	CST3	chr20	23615957	-
intron-3UTR	ENST00000538303	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
intron-3UTR	ENST00000538303	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
intron-intron	ENST00000538303	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000379343	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000379343	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-intron	ENST00000379343	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000357055	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000357055	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-intron	ENST00000357055	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000435660	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000435660	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-intron	ENST00000435660	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000282587	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000282587	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-intron	ENST00000282587	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000406369	ENST00000375990		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-3UTR	ENST00000406369	ENST00000259253		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
3UTR-intron	ENST00000406369	ENST00000465836		ChiTaRS3.1			AI148255	SLC30A6	chr2	32446512	-	UGGT1	chr2	128949086	-
intron-intron	ENST00000303575	ENST00000355327		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000303575	ENST00000261862		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000303575	ENST00000357769		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000303575	ENST00000567838		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000557670	ENST00000355327		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000557670	ENST00000261862		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000557670	ENST00000357769		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-intron	ENST00000557670	ENST00000567838		ChiTaRS3.1			AI161054	TMED10	chr14	75601015	+	THSD4	chr15	71583554	+
intron-3UTR	ENST00000373542	ENST00000373542		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373542	ENST00000373545		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373542	ENST00000541944		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373542	ENST00000339490		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373542	ENST00000373539		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373545	ENST00000373542		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373545	ENST00000373545		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373545	ENST00000541944		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373545	ENST00000339490		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373545	ENST00000373539		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000541944	ENST00000373542		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000541944	ENST00000373545		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000541944	ENST00000541944		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000541944	ENST00000339490		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000541944	ENST00000373539		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000339490	ENST00000373542		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000339490	ENST00000373545		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000339490	ENST00000541944		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000339490	ENST00000339490		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000339490	ENST00000373539		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373539	ENST00000373542		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373539	ENST00000373545		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373539	ENST00000541944		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373539	ENST00000339490		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3UTR	ENST00000373539	ENST00000373539		ChiTaRS3.1			AI174654	PHKA1	chrX	71800553	+	PHKA1	chrX	71800690	-
intron-3CDS	ENST00000400098	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000400098	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000400098	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000400100	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000400100	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000400100	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000400097	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000400097	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000400097	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000553597	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000553597	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000553597	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000390687	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000390687	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000390687	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000346403	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000346403	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000346403	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000554227	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000554227	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000554227	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000577565	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000577565	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000577565	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000444203	ENST00000315717		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3CDS	ENST00000444203	ENST00000295685		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
intron-3UTR	ENST00000444203	ENST00000477992		ChiTaRS3.1			AI174735	SNRPN	chr15	25584243	+	ARPC2	chr2	219114631	-
Frame-shit	ENST00000320954	ENST00000404648		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000320954	ENST00000405164		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000320954	ENST00000336098		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000320954	ENST00000407946		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000449224	ENST00000404648		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000449224	ENST00000405164		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000449224	ENST00000336098		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
Frame-shit	ENST00000449224	ENST00000407946		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
3UTR-3CDS	ENST00000485310	ENST00000404648		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
3UTR-3CDS	ENST00000485310	ENST00000405164		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
3UTR-3CDS	ENST00000485310	ENST00000336098		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
3UTR-3CDS	ENST00000485310	ENST00000407946		ChiTaRS3.1			AI174865	CRTAP	chr3	33161913	-	FGG	chr4	155528124	-
intron-intron	ENST00000308249	ENST00000308249		ChiTaRS3.1			AI183564	PPM1E	chr17	56848485	-	PPM1E	chr17	56901873	-
intron-3UTR	ENST00000583456	ENST00000439174		ChiTaRS3.1			AI189075	MIR548AE2	chr16	48385610	-	GNA13	chr17	63007900	-
intron-intron	ENST00000583456	ENST00000541118		ChiTaRS3.1			AI189075	MIR548AE2	chr16	48385610	-	GNA13	chr17	63007900	-
3UTR-3UTR	ENST00000297268	ENST00000354452		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-3UTR	ENST00000297268	ENST00000356073		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000568673		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000457482		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000543082		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000540999		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000537578		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000564999		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000568740		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000537856		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000544241		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000561992		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000561831		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000565018		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000570287		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000564228		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000567880		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000566286		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000566279		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000564403		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000398339		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000570177		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
3UTR-intron	ENST00000297268	ENST00000563760		ChiTaRS3.1			AI190855	COL1A2	chr7	94060127	-	TCF4	chr18	52894388	+
intron-intron	ENST00000263212	ENST00000372371		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000263212	ENST00000484760		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000407142	ENST00000372371		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000407142	ENST00000484760		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000538191	ENST00000372371		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000538191	ENST00000484760		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000397495	ENST00000372371		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000397495	ENST00000484760		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000486259	ENST00000372371		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
intron-intron	ENST00000486259	ENST00000484760		ChiTaRS3.1			AI193375	PPM1F	chr22	22297586	-	POLR3A	chr10	79750804	+
5CDS-intron	ENST00000355072	ENST00000355072		ChiTaRS3.1			AI201664	HTT	chr4	3210623	+	HTT	chr4	3209091	+
5CDS-intron	ENST00000355072	ENST00000513806		ChiTaRS3.1			AI201664	HTT	chr4	3210623	+	HTT	chr4	3209091	+
intron-intron	ENST00000513806	ENST00000355072		ChiTaRS3.1			AI201664	HTT	chr4	3210623	+	HTT	chr4	3209091	+
intron-intron	ENST00000513806	ENST00000513806		ChiTaRS3.1			AI201664	HTT	chr4	3210623	+	HTT	chr4	3209091	+
intron-3UTR	ENST00000273038	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000273038	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000273038	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000273038	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000273038	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000273038	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000273038	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000430365	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000430365	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000430365	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000430365	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000430365	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000430365	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000430365	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000404339	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000404339	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000404339	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000404339	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000404339	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000404339	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000404339	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000480288	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000480288	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000480288	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000480288	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000480288	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000480288	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000480288	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000413604	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000413604	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000413604	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000413604	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000413604	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000413604	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000413604	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000451674	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000451674	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000451674	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000451674	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000451674	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000451674	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000451674	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000424529	ENST00000273038		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000424529	ENST00000430365		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000424529	ENST00000404339		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000424529	ENST00000480288		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-3UTR	ENST00000424529	ENST00000413604		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000424529	ENST00000451674		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-intron	ENST00000424529	ENST00000424529		ChiTaRS3.1			AI202435	VGLL4	chr3	11600166	+	VGLL4	chr3	11599590	+
intron-5UTR	ENST00000355035	ENST00000257899		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000355035	ENST00000548925		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000355035	ENST00000549147		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000355035	ENST00000547076		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000355035	ENST00000551926		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000355035	ENST00000548556		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000380952	ENST00000257899		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000380952	ENST00000548925		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000380952	ENST00000549147		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000380952	ENST00000547076		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000380952	ENST00000551926		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000380952	ENST00000548556		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000254850	ENST00000257899		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000254850	ENST00000548925		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000254850	ENST00000549147		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000254850	ENST00000547076		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000254850	ENST00000551926		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000254850	ENST00000548556		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000446679	ENST00000257899		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000446679	ENST00000548925		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-5UTR	ENST00000446679	ENST00000549147		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000446679	ENST00000547076		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000446679	ENST00000551926		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-intron	ENST00000446679	ENST00000548556		ChiTaRS3.1			AI207464	ASGR2	chr17	7011857	+	BLOC1S1	chr12	56109902	+
intron-3UTR	ENST00000400098	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400098	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400098	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000400100	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400100	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400100	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000400097	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400097	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000400097	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000553597	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000553597	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000553597	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000390687	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000390687	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000390687	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000346403	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000346403	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000346403	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000554227	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000554227	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000554227	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000577565	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000577565	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000577565	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000444203	ENST00000247001		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000444203	ENST00000585763		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-intron	ENST00000444203	ENST00000334782		ChiTaRS3.1			AI207554	SNRPN	chr15	25229060	-	SUGP1	chr19	19387436	-
intron-3UTR	ENST00000367990	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000367990	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-3UTR	ENST00000468465	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000468465	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-3UTR	ENST00000463812	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000463812	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-3UTR	ENST00000470459	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000470459	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-3UTR	ENST00000464492	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000464492	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-3UTR	ENST00000491350	ENST00000354725		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
intron-intron	ENST00000491350	ENST00000467238		ChiTaRS3.1			AI207725	APOA2	chr1	161193414	+	SND1	chr7	127732510	+
Frame-shit	ENST00000399975	ENST00000399975		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399975	ENST00000399976		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399975	ENST00000334352		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399975	ENST00000535828		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399976	ENST00000399975		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399976	ENST00000399976		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399976	ENST00000334352		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000399976	ENST00000535828		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000334352	ENST00000399975		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000334352	ENST00000399976		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000334352	ENST00000334352		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
Frame-shit	ENST00000334352	ENST00000535828		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
intron-3CDS	ENST00000535828	ENST00000399975		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
intron-3CDS	ENST00000535828	ENST00000399976		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
intron-3CDS	ENST00000535828	ENST00000334352		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
intron-3CDS	ENST00000535828	ENST00000535828		ChiTaRS3.1			AI221835	USP16	chr21	30408665	-	USP16	chr21	30415906	-
3UTR-intron	ENST00000423431	ENST00000374791		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000539799		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000427481		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000374786		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000425719		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000374784		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000423431	ENST00000474900		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000374791		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000539799		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000427481		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000374786		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000425719		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000374784		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000233025	ENST00000474900		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000374791		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000539799		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000427481		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000374786		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000425719		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000374784		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
3UTR-intron	ENST00000602728	ENST00000474900		ChiTaRS3.1			AI221915	SPCS1	chr3	52742065	-	NTM	chr11	131404621	+
intron-intron	ENST00000429927	ENST00000301831		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000429927	ENST00000420927		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000429927	ENST00000489118		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000429927	ENST00000414606		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000307465	ENST00000301831		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000307465	ENST00000420927		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000307465	ENST00000489118		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000307465	ENST00000414606		ChiTaRS3.1			AI223964	CDKL2	chr4	76540566	+	ULK4	chr3	41704276	-
intron-intron	ENST00000588072	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000588072	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000588072	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000588072	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000317235	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000317235	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000317235	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000317235	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000309976	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000309976	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000309976	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000309976	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000344987	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000344987	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000344987	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000344987	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000592755	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000592755	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000592755	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000592755	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000399978	ENST00000441068		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000399978	ENST00000254090		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000399978	ENST00000369272		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
intron-intron	ENST00000399978	ENST00000465173		ChiTaRS3.1			AI240595	MPPE1	chr18	11884109	+	FMO5	chr1	146676637	-
3UTR-3CDS	ENST00000370179	ENST00000547956		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
3UTR-3CDS	ENST00000370179	ENST00000549260		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
3UTR-3CDS	ENST00000370179	ENST00000303694		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
3UTR-3CDS	ENST00000370179	ENST00000546689		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
3UTR-intron	ENST00000370179	ENST00000550711		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000370177	ENST00000547956		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000370177	ENST00000549260		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000370177	ENST00000303694		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000370177	ENST00000546689		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-intron	ENST00000370177	ENST00000550711		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000473620	ENST00000547956		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000473620	ENST00000549260		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000473620	ENST00000303694		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-3CDS	ENST00000473620	ENST00000546689		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
intron-intron	ENST00000473620	ENST00000550711		ChiTaRS3.1			AI243715	PPDPF	chr20	62153324	-	CHST11	chr12	104851276	+
5CDS-intron	ENST00000417172	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
5CDS-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000417172		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000361388		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000422748		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000361675		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000361901		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000393118		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000495522		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000424922		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000543443		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
intron-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			AI245514	CALD1	chr7	134552529	-	CALD1	chr7	134553927	-
3UTR-intron	ENST00000328965	ENST00000406775		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000342771		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000403018		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
3UTR-intron	ENST00000328965	ENST00000489774		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000406775		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000342771		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000403018		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000531220	ENST00000489774		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000406775		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000342771		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000403018		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000534735	ENST00000489774		ChiTaRS3.1			AI248504	OAF	chr11	120100537	-	AUTS2	chr7	70002755	-
intron-intron	ENST00000585101	ENST00000359600		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
intron-intron	ENST00000585101	ENST00000464588		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
intron-intron	ENST00000474627	ENST00000359600		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
intron-intron	ENST00000474627	ENST00000464588		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
intron-intron	ENST00000469327	ENST00000359600		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
intron-intron	ENST00000469327	ENST00000464588		ChiTaRS3.1			AI249524	ATPAF2	chr17	17931855	-	ZSWIM5	chr1	45518151	-
3UTR-3UTR	ENST00000258187	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000258187	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000258187	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000258187	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000258187	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000258187	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394282	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394282	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394282	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394282	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394282	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394279	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394279	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394279	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000394279	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000394279	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000566192	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000566192	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000566192	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000566192	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000566192	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000568640	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000568640	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000568640	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000568640	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000568640	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000563022	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000563022	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000563022	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000563022	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000563022	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000569923	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000569923	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000569923	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000569923	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000569923	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000356752	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000356752	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000356752	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-intron	ENST00000356752	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000356752	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000563799	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000563799	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000563799	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000563799	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000563799	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000562999	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000562999	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000562999	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000562999	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000562999	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000258187		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000394282		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000394279		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000566192		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000570248	ENST00000568640		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000570248	ENST00000563022		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000570248	ENST00000569923		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-intron	ENST00000570248	ENST00000356752		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000563799		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000562999		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
3UTR-3UTR	ENST00000570248	ENST00000570248		ChiTaRS3.1			AI267605	NDRG4	chr16	58546828	-	NDRG4	chr16	58547109	+
intron-3UTR	ENST00000392882	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000392882	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000392882	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000392882	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000392882	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000392882	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000392882	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000358655	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000358655	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000355338	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000355338	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000344102	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000344102	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000557135	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000557135	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000556645	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000556645	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000392882		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000358655		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000355338		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000344102		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000557135		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3UTR	ENST00000554084	ENST00000556645		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-intron	ENST00000554084	ENST00000554084		ChiTaRS3.1			AI268655	WARS	chr14	100801126	+	WARS	chr14	100801086	-
intron-3CDS	ENST00000343986	ENST00000369299		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
intron-3CDS	ENST00000343986	ENST00000393045		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
intron-3CDS	ENST00000343986	ENST00000369298		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000492356	ENST00000369299		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000492356	ENST00000393045		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000492356	ENST00000369298		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000370562	ENST00000369299		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000370562	ENST00000393045		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000370562	ENST00000369298		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000450116	ENST00000369299		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000450116	ENST00000393045		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
3UTR-3CDS	ENST00000450116	ENST00000369298		ChiTaRS3.1			AI275065	RPS21	chr20	60963482	-	PIAS3	chr1	145578714	-
intron-intron	ENST00000395631	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000395631	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000395631	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000395631	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000395631	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000341590	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000341590	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000341590	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000341590	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000341590	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000343279	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000343279	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000343279	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000343279	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000343279	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000553373	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000553373	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000553373	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000553373	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000553373	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000399304	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000399304	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000399304	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000399304	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000399304	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000557255	ENST00000278379		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000557255	ENST00000395750		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000557255	ENST00000395753		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000557255	ENST00000606205		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
intron-intron	ENST00000557255	ENST00000479543		ChiTaRS3.1			AI280085	FERMT2	chr14	53325166	+	SLC1A2	chr11	35413659	+
3UTR-intron	ENST00000484928	ENST00000582337		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000484928	ENST00000309902		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000484928	ENST00000577538		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000484928	ENST00000299687		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000484928	ENST00000584235		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000004103	ENST00000582337		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000004103	ENST00000309902		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000004103	ENST00000577538		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000004103	ENST00000299687		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
3UTR-intron	ENST00000004103	ENST00000584235		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000461345	ENST00000582337		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000461345	ENST00000309902		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000461345	ENST00000577538		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000461345	ENST00000299687		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000461345	ENST00000584235		ChiTaRS3.1			AI282294	TMEM176A	chr7	150502128	-	ZNF407	chr18	72692209	-
intron-intron	ENST00000466084	ENST00000373640		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000466084	ENST00000477463		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000296127	ENST00000373640		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000296127	ENST00000477463		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000424952	ENST00000373640		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000424952	ENST00000477463		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000342790	ENST00000373640		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-intron	ENST00000342790	ENST00000477463		ChiTaRS3.1			AI286195	ZDHHC3	chr3	44957056	+	C2orf72	chr2	231905159	-
intron-3CDS	ENST00000530124	ENST00000295598		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000530124	ENST00000537345		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000530124	ENST00000369496		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-intron	ENST00000530124	ENST00000491156		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000257247	ENST00000295598		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000257247	ENST00000537345		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000257247	ENST00000369496		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-intron	ENST00000257247	ENST00000491156		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000525875	ENST00000295598		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000525875	ENST00000537345		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000525875	ENST00000369496		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-intron	ENST00000525875	ENST00000491156		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000378024	ENST00000295598		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000378024	ENST00000537345		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-3CDS	ENST00000378024	ENST00000369496		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
intron-intron	ENST00000378024	ENST00000491156		ChiTaRS3.1			AI300525	AHNAK	chr11	62283570	+	ATP1A1	chr1	116939300	-
3UTR-3CDS	ENST00000301178	ENST00000409185		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
3UTR-3CDS	ENST00000301178	ENST00000389915		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000359092	ENST00000409185		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000359092	ENST00000389915		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000594880	ENST00000409185		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000594880	ENST00000389915		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000593513	ENST00000409185		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-3CDS	ENST00000593513	ENST00000389915		ChiTaRS3.1			AI302445	AXL	chr19	41767490	-	FAM168B	chr2	131810485	+
intron-intron	ENST00000389462	ENST00000396821		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
intron-intron	ENST00000389462	ENST00000444597		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
intron-intron	ENST00000389462	ENST00000381633		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
intron-intron	ENST00000389462	ENST00000432525		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000309083	ENST00000396821		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000309083	ENST00000444597		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000309083	ENST00000381633		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000309083	ENST00000432525		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000538057	ENST00000396821		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000538057	ENST00000444597		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000538057	ENST00000381633		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
3UTR-intron	ENST00000538057	ENST00000432525		ChiTaRS3.1			AI332565	PTMS	chr12	6880056	-	DDX17	chr22	38887895	+
intron-3CDS	ENST00000425933	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000425933	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000425933	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000425933	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000425933	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000425933	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000425933	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000543599	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000543599	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000329082	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000329082	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000542321	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000542321	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000538818	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000538818	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557301	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000557301	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000557420	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000557420	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556658	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000556658	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000556087	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000556087	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000318561		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000521315		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000437090		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000520605		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000522109		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-3CDS	ENST00000555584	ENST00000524255		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000555584	ENST00000522880		ChiTaRS3.1			AI336345	RGMA	chr15	93587025	+	SFTPC	chr8	22020597	+
intron-intron	ENST00000355528	ENST00000355528		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000397466		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000539345		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000355528	ENST00000576691		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000355528		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000397466		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000539345		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000397466	ENST00000576691		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000355528		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000397466		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000539345		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000539345	ENST00000576691		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000355528		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000397466		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000539345		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
intron-intron	ENST00000576691	ENST00000576691		ChiTaRS3.1			AI336944	TBCD	chr17	80731233	-	TBCD	chr17	80733095	-
3UTR-intron	ENST00000372409	ENST00000376811		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000372409	ENST00000482537		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000372409	ENST00000361092		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000372409	ENST00000376808		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000479348	ENST00000376811		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000479348	ENST00000482537		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000479348	ENST00000361092		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
3UTR-intron	ENST00000479348	ENST00000376808		ChiTaRS3.1			AI339194	PCIF1	chr20	44576415	-	NMRK1	chr9	77697169	-
intron-intron	ENST00000502732	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000367623	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000507173	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000511413	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000392043	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000408940	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000344730	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000512653	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-intron	ENST00000504405	ENST00000314797		ChiTaRS3.1			AI339254	ABL2	chr1	179171148	-	COPG1	chr3	128986884	-
intron-3UTR	ENST00000314888	ENST00000377474		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-3UTR	ENST00000314888	ENST00000317765		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-3UTR	ENST00000540444	ENST00000377474		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-3UTR	ENST00000540444	ENST00000317765		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-3UTR	ENST00000464379	ENST00000377474		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-3UTR	ENST00000464379	ENST00000317765		ChiTaRS3.1			AI343584	TLN1	chr9	35697494	+	KCTD12	chr13	77456517	+
intron-intron	ENST00000237596	ENST00000367469		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-3UTR	ENST00000237596	ENST00000367467		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000237596	ENST00000470750		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000508588	ENST00000367469		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-3UTR	ENST00000508588	ENST00000367467		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000508588	ENST00000470750		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000511337	ENST00000367469		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-3UTR	ENST00000511337	ENST00000367467		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000511337	ENST00000470750		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000502363	ENST00000367469		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-3UTR	ENST00000502363	ENST00000367467		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-intron	ENST00000502363	ENST00000470750		ChiTaRS3.1			AI343884	PKD2	chr4	88968682	-	SASH1	chr6	148870939	-
intron-3UTR	ENST00000415912	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000415912	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000415912	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000415912	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000415912	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000415912	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000357071	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000357071	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000357071	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000357071	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000357071	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000357071	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000374893	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000374893	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000374893	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000374893	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000374893	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000374893	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000436918	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000436918	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000436918	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000436918	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000436918	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000436918	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000264205	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000264205	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000264205	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000264205	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000264205	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000264205	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000528294	ENST00000415912		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-3UTR	ENST00000528294	ENST00000357071		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000528294	ENST00000374893		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000528294	ENST00000436918		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000528294	ENST00000264205		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000528294	ENST00000528294		ChiTaRS3.1			AI343944	ECE1	chr1	21545686	-	ECE1	chr1	21546273	-
intron-intron	ENST00000310455	ENST00000341105		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000310455	ENST00000489987		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000310455	ENST00000430265		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000310455	ENST00000487848		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000519699	ENST00000341105		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000519699	ENST00000489987		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000519699	ENST00000430265		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-intron	ENST00000519699	ENST00000487848		ChiTaRS3.1			AI344454	PPP1R3B	chr8	8993854	+	GATA2	chr3	128204254	+
intron-3CDS	ENST00000357037	ENST00000301200		ChiTaRS3.1			AI347175	PTRF	chr17	40575261	+	CDC42EP5	chr19	54984412	-
intron-intron	ENST00000357037	ENST00000472703		ChiTaRS3.1			AI347175	PTRF	chr17	40575261	+	CDC42EP5	chr19	54984412	-
intron-3UTR	ENST00000294435	ENST00000300184		ChiTaRS3.1			AI356564	RBP7	chr1	10070425	-	MS4A7	chr11	60161905	-
intron-3UTR	ENST00000294435	ENST00000358246		ChiTaRS3.1			AI356564	RBP7	chr1	10070425	-	MS4A7	chr11	60161905	-
intron-intron	ENST00000294435	ENST00000530234		ChiTaRS3.1			AI356564	RBP7	chr1	10070425	-	MS4A7	chr11	60161905	-
intron-3UTR	ENST00000294435	ENST00000534016		ChiTaRS3.1			AI356564	RBP7	chr1	10070425	-	MS4A7	chr11	60161905	-
3UTR-intron	ENST00000445193	ENST00000585748		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000445193	ENST00000326873		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000477305	ENST00000585748		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000477305	ENST00000326873		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000295959	ENST00000585748		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
3UTR-intron	ENST00000295959	ENST00000326873		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000466547	ENST00000585748		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000466547	ENST00000326873		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000528153	ENST00000585748		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-intron	ENST00000528153	ENST00000326873		ChiTaRS3.1			AI365374	RPP14	chr3	58305165	-	STK11	chr19	1224740	-
intron-3CDS	ENST00000221561	ENST00000318560		ChiTaRS3.1			AI369824	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000327141	ENST00000318560		ChiTaRS3.1			AI369824	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000592330	ENST00000318560		ChiTaRS3.1			AI369824	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3CDS	ENST00000586839	ENST00000318560		ChiTaRS3.1			AI369824	AES	chr19	3053266	+	ABL1	chr9	133738296	-
intron-3UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
intron-3UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			AI370444	TIMP2	chr17	76849742	-	TIMP2	chr17	76851740	-
3UTR-3CDS	ENST00000321562	ENST00000409699		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000321562	ENST00000360698		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000321562	ENST00000422354		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000321562	ENST00000395625		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000321562	ENST00000288745		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-intron	ENST00000321562	ENST00000478721		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-intron	ENST00000321562	ENST00000395614		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3CDS	ENST00000544340	ENST00000409699		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000544340	ENST00000360698		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000544340	ENST00000422354		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000544340	ENST00000395625		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-3UTR	ENST00000544340	ENST00000288745		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-intron	ENST00000544340	ENST00000478721		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
3UTR-intron	ENST00000544340	ENST00000395614		ChiTaRS3.1			AI376184	FKBP10	chr17	39979137	-	MEGF11	chr15	66190311	-
intron-5UTR	ENST00000396787	ENST00000405486		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000396787	ENST00000356244		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000396787	ENST00000455915		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000396787	ENST00000407260		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-5UTR	ENST00000378495	ENST00000405486		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378495	ENST00000356244		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378495	ENST00000455915		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378495	ENST00000407260		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-5UTR	ENST00000378496	ENST00000405486		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378496	ENST00000356244		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378496	ENST00000455915		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000378496	ENST00000407260		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-5UTR	ENST00000481299	ENST00000405486		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000481299	ENST00000356244		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000481299	ENST00000455915		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-intron	ENST00000481299	ENST00000407260		ChiTaRS3.1			AI379205	UNC13B	chr9	35218477	+	RANGAP1	chr22	41681149	+
intron-3UTR	ENST00000334940	ENST00000344924		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000334940	ENST00000418040		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000334940	ENST00000393132		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000374417	ENST00000344924		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000374417	ENST00000418040		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000374417	ENST00000393132		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000340258	ENST00000344924		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000340258	ENST00000418040		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000340258	ENST00000393132		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000472561	ENST00000344924		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000472561	ENST00000418040		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-3UTR	ENST00000472561	ENST00000393132		ChiTaRS3.1			AI380175	RASSF4	chr10	45471902	+	BPGM	chr7	134364356	-
intron-intron	ENST00000314622	ENST00000434724		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000314622	ENST00000439887		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000314622	ENST00000563468		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000314622	ENST00000420576		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000314622	ENST00000564790		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000485793	ENST00000434724		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000485793	ENST00000439887		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000485793	ENST00000563468		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000485793	ENST00000420576		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000485793	ENST00000564790		ChiTaRS3.1			AI391565	NSUN3	chr3	93831987	-	GSPT1	chr16	11981741	+
intron-intron	ENST00000264161	ENST00000264161		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000264161	ENST00000537273		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000264161	ENST00000463008		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000537273	ENST00000264161		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000537273	ENST00000537273		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000537273	ENST00000463008		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000463008	ENST00000264161		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000463008	ENST00000537273		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
intron-intron	ENST00000463008	ENST00000463008		ChiTaRS3.1			AI393124	DARS	chr2	136672907	+	DARS	chr2	136671520	+
3UTR-3CDS	ENST00000301011	ENST00000301011		ChiTaRS3.1			AI394555	ZC3H18	chr16	88697984	+	ZC3H18	chr16	88694166	+
3UTR-3CDS	ENST00000301011	ENST00000452588		ChiTaRS3.1			AI394555	ZC3H18	chr16	88697984	+	ZC3H18	chr16	88694166	+
intron-3CDS	ENST00000452588	ENST00000301011		ChiTaRS3.1			AI394555	ZC3H18	chr16	88697984	+	ZC3H18	chr16	88694166	+
intron-3CDS	ENST00000452588	ENST00000452588		ChiTaRS3.1			AI394555	ZC3H18	chr16	88697984	+	ZC3H18	chr16	88694166	+
3UTR-3UTR	ENST00000461988	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000461988	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000461988	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000461988	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000461988	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000461988	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000419840	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000419840	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000419840	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000419840	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000419840	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000419840	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000394893	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000394893	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000394893	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000394893	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000394893	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000394893	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000475509	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000475509	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000475509	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000475509	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-intron	ENST00000475509	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-intron	ENST00000475509	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000545601	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000545601	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000545601	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000545601	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000545601	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000545601	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000450476	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000450476	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000450476	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-3UTR	ENST00000450476	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-intron	ENST00000450476	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-intron	ENST00000450476	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000439269	ENST00000357681		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000439269	ENST00000391954		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000439269	ENST00000367218		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-3UTR	ENST00000439269	ENST00000367219		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000439269	ENST00000341360		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
3UTR-intron	ENST00000439269	ENST00000466407		ChiTaRS3.1			AI419535	POR	chr7	75616090	-	ATP2B4	chr1	203710661	-
intron-intron	ENST00000311160	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000355730	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000398879	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000442536	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000458317	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000474346	ENST00000373173		ChiTaRS3.1			AI421364	TNS3	chr7	47367110	+	APOOL	chrX	84347574	-
intron-intron	ENST00000330978	ENST00000252699		ChiTaRS3.1			AI424925	BOLA2	chr16	30004072	+	ACTN4	chr19	39210701	-
intron-intron	ENST00000330978	ENST00000424234		ChiTaRS3.1			AI424925	BOLA2	chr16	30004072	+	ACTN4	chr19	39210701	-
intron-intron	ENST00000330978	ENST00000390009		ChiTaRS3.1			AI424925	BOLA2	chr16	30004072	+	ACTN4	chr19	39210701	-
intron-intron	ENST00000330978	ENST00000497637		ChiTaRS3.1			AI424925	BOLA2	chr16	30004072	+	ACTN4	chr19	39210701	-
intron-intron	ENST00000542575	ENST00000418658		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000397461		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000427331		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000358480		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000397459		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000448906		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000542575	ENST00000475817		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000418658		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000397461		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000427331		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000358480		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000397459		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000448906		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000434726	ENST00000475817		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000418658		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000397461		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000427331		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000358480		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000397459		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000448906		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000594991	ENST00000475817		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000418658		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000397461		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000427331		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000358480		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000397459		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000448906		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
intron-intron	ENST00000412532	ENST00000475817		ChiTaRS3.1			AI439494	SLC1A5	chr19	47278361	+	CNTN4	chr3	2355931	+
Frame-shit	ENST00000209929	ENST00000209929		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
Frame-shit	ENST00000209929	ENST00000441535		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
5CDS-3UTR	ENST00000209929	ENST00000529935		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
Frame-shit	ENST00000441535	ENST00000209929		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
Frame-shit	ENST00000441535	ENST00000441535		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
5CDS-3UTR	ENST00000441535	ENST00000529935		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
3UTR-3CDS	ENST00000529935	ENST00000209929		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
3UTR-3CDS	ENST00000529935	ENST00000441535		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
3UTR-3UTR	ENST00000529935	ENST00000529935		ChiTaRS3.1			AI452615	FMO2	chr1	171174640	-	FMO2	chr1	171173038	+
3UTR-3CDS	ENST00000394729	ENST00000394729		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
3UTR-3CDS	ENST00000394729	ENST00000330452		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
3UTR-intron	ENST00000394729	ENST00000477794		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
3UTR-3CDS	ENST00000330452	ENST00000394729		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
3UTR-3CDS	ENST00000330452	ENST00000330452		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
3UTR-intron	ENST00000330452	ENST00000477794		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
intron-3CDS	ENST00000477794	ENST00000394729		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
intron-3CDS	ENST00000477794	ENST00000330452		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
intron-intron	ENST00000477794	ENST00000477794		ChiTaRS3.1			AI457515	PRKCD	chr3	53226458	-	PRKCD	chr3	53217182	+
intron-intron	ENST00000355875	ENST00000355875		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000355875	ENST00000366541		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000355875	ENST00000343783		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000355875	ENST00000391846		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000355875	ENST00000496361		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000366541	ENST00000355875		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000366541	ENST00000366541		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000366541	ENST00000343783		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000366541	ENST00000391846		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000366541	ENST00000496361		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000343783	ENST00000355875		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000343783	ENST00000366541		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000343783	ENST00000343783		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000343783	ENST00000391846		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000343783	ENST00000496361		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000391846	ENST00000355875		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000391846	ENST00000366541		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000391846	ENST00000343783		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000391846	ENST00000391846		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000391846	ENST00000496361		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000496361	ENST00000355875		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000496361	ENST00000366541		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000496361	ENST00000343783		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000496361	ENST00000391846		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
intron-intron	ENST00000496361	ENST00000496361		ChiTaRS3.1			AI469144	SDCCAG8	chr1	243553790	-	SDCCAG8	chr1	243554628	-
3UTR-3UTR	ENST00000216014	ENST00000216014		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
3UTR-intron	ENST00000216014	ENST00000409006		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
3UTR-intron	ENST00000216014	ENST00000471268		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-3UTR	ENST00000409006	ENST00000216014		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-intron	ENST00000409006	ENST00000409006		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-intron	ENST00000409006	ENST00000471268		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-3UTR	ENST00000471268	ENST00000216014		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-intron	ENST00000471268	ENST00000409006		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-intron	ENST00000471268	ENST00000471268		ChiTaRS3.1			AI470645	KDELR3	chr22	38879252	-	KDELR3	chr22	38879083	+
intron-3CDS	ENST00000205636	ENST00000205636		ChiTaRS3.1			AI471964	CMTM6	chr3	32544339	+	CMTM6	chr3	32525467	-
intron-intron	ENST00000300093	ENST00000391976		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000300093	ENST00000310931		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000300093	ENST00000391975		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000300093	ENST00000427183		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000300093	ENST00000476807		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000564202	ENST00000391976		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000564202	ENST00000310931		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000564202	ENST00000391975		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000564202	ENST00000427183		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
intron-intron	ENST00000564202	ENST00000476807		ChiTaRS3.1			AI476705	PLK1	chr16	23701832	+	HDLBP	chr2	242191427	+
Frame-shit	ENST00000209728	ENST00000209728		ChiTaRS3.1			AI478744	CDC6	chr17	38451675	-	CDC6	chr17	38450630	+
intron-3CDS	ENST00000359337	ENST00000316881		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000359337	ENST00000573108		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000359337	ENST00000537230		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-3CDS	ENST00000449103	ENST00000316881		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000449103	ENST00000573108		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000449103	ENST00000537230		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-3CDS	ENST00000496720	ENST00000316881		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000496720	ENST00000573108		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-intron	ENST00000496720	ENST00000537230		ChiTaRS3.1			AI492115	PLXNB2	chr22	50713479	+	TRIM25	chr17	54990919	+
intron-3UTR	ENST00000341516	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000341516	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000554215	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000554215	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000556847	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000556847	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000557386	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000557386	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000389997	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000389997	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000553293	ENST00000341516		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000553293	ENST00000554215		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000556847		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000557386		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000389997		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000553293		ChiTaRS3.1			AI493336	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000225394	ENST00000573984		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000575251		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000301391		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000575411		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000573984		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000575251		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000301391		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000575411		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000573984		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000575251		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000301391		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000575411		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000573984		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000575251		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000301391		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000575411		ChiTaRS3.1			AI498045	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
3UTR-3UTR	ENST00000404039	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000404039	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000404039	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000406326	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000406326	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000377770	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000377770	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-intron	ENST00000332007	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
3UTR-3UTR	ENST00000332007	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000496611	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000496611	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000283365		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000596745		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000315456		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000598334		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000554864		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000399121		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000595022		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000269190		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000399097		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000598774		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000598142		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000348997		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000597599		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000269191		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000444659		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000399113		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000601125		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000269192		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000591182		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000597674		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000556414		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000599844		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000427557	ENST00000590831		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-3UTR	ENST00000427557	ENST00000592449		ChiTaRS3.1			AI500195	DPP6	chr7	154685096	-	DTNA	chr18	32470629	+
intron-intron	ENST00000348405	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000348405	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000348405	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000348405	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000513858	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000513858	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000513858	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000513858	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000395310	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000395310	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000395310	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000395310	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000443462	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000443462	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000443462	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000443462	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000509142	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000509142	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000509142	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000509142	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000326950	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000326950	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000326950	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000326950	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000432794	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000432794	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000432794	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000432794	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000311785	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000311785	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000311785	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000311785	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000448323	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000448323	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000448323	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000448323	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505472	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505472	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505472	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505472	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000500777	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000500777	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000500777	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000500777	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508502	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508502	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508502	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508502	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000355196	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000355196	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000355196	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000355196	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000264405	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000264405	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000264405	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000264405	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505984	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505984	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505984	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000505984	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508479	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508479	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508479	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000508479	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000436790	ENST00000489495		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000436790	ENST00000370768		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000436790	ENST00000370767		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
intron-intron	ENST00000436790	ENST00000436586		ChiTaRS3.1			AI523884	SEC31A	chr4	83814364	+	FUBP1	chr1	78443241	+
5CDS-3UTR	ENST00000353383	ENST00000283928		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
5CDS-intron	ENST00000353383	ENST00000466516		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-3UTR	ENST00000489697	ENST00000283928		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000489697	ENST00000466516		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-3UTR	ENST00000261641	ENST00000283928		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000261641	ENST00000466516		ChiTaRS3.1			AI547124	RAI1	chr17	17701102	+	JAZF1	chr7	27871252	-
intron-intron	ENST00000510123	ENST00000510123		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000510123	ENST00000389158		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000510123	ENST00000507413		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000510123	ENST00000509257		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000389158	ENST00000510123		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000389158	ENST00000389158		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000389158	ENST00000507413		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000389158	ENST00000509257		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000507413	ENST00000510123		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000507413	ENST00000389158		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000507413	ENST00000507413		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000507413	ENST00000509257		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000509257	ENST00000510123		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000509257	ENST00000389158		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000509257	ENST00000507413		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
intron-intron	ENST00000509257	ENST00000509257		ChiTaRS3.1			AI582725	NOP16	chr5	175811335	+	NOP16	chr5	175811428	-
5CDS-intron	ENST00000270625	ENST00000356113		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000270625	ENST00000414170		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000270625	ENST00000299022		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000270625	ENST00000433326		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
intron-intron	ENST00000596873	ENST00000356113		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
intron-intron	ENST00000596873	ENST00000414170		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
intron-intron	ENST00000596873	ENST00000299022		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
intron-intron	ENST00000596873	ENST00000433326		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000594493	ENST00000356113		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000594493	ENST00000414170		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000594493	ENST00000299022		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
5CDS-intron	ENST00000594493	ENST00000433326		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
3UTR-intron	ENST00000599561	ENST00000356113		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
3UTR-intron	ENST00000599561	ENST00000414170		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
3UTR-intron	ENST00000599561	ENST00000299022		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
3UTR-intron	ENST00000599561	ENST00000433326		ChiTaRS3.1			AI589684	RPS11	chr19	50002861	-	LIPC	chr15	58805407	-
3UTR-intron	ENST00000267101	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000267101	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000450146	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000415288	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000553131	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000411731	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000450793		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000538141		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000380180		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000318007		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000437932		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000317968		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000542407		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000508216		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000514743		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000380176		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000359265		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000512274		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
3UTR-intron	ENST00000549832	ENST00000504489		ChiTaRS3.1			AI610375	ERBB3	chr12	56497194	-	PDLIM5	chr4	95495984	-
intron-intron	ENST00000519325	ENST00000519325		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000519325	ENST00000439768		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-3UTR	ENST00000519325	ENST00000436816		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000519325	ENST00000322602		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000439768	ENST00000519325		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000439768	ENST00000439768		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-3UTR	ENST00000439768	ENST00000436816		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000439768	ENST00000322602		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
3UTR-intron	ENST00000436816	ENST00000519325		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
3UTR-intron	ENST00000436816	ENST00000439768		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
3UTR-3UTR	ENST00000436816	ENST00000436816		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
3UTR-intron	ENST00000436816	ENST00000322602		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000322602	ENST00000519325		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000322602	ENST00000439768		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-3UTR	ENST00000322602	ENST00000436816		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000322602	ENST00000322602		ChiTaRS3.1			AI619694	MFAP3	chr5	153435579	+	MFAP3	chr5	153436050	-
intron-intron	ENST00000417172	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000417172	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000417172	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000417172	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361388	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361388	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361388	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000422748	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000422748	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000422748	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000361675	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000361675	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000361675	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361901	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361901	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000361901	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000393118	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000393118	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3UTR	ENST00000393118	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000495522	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000495522	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000495522	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000424922	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000424922	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000424922	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000543443	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000543443	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000543443	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000417172		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000466704	ENST00000361388		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000422748		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000361675		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000466704	ENST00000361901		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-3UTR	ENST00000466704	ENST00000393118		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000495522		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000424922		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000543443		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
intron-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			AI628315	CALD1	chr7	134655182	-	CALD1	chr7	134654989	+
3UTR-3CDS	ENST00000336576	ENST00000005558		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
3UTR-3CDS	ENST00000336576	ENST00000403825		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
3UTR-3CDS	ENST00000336576	ENST00000429071		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
3UTR-3CDS	ENST00000336576	ENST00000535603		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
3UTR-intron	ENST00000336576	ENST00000486688		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000392086	ENST00000005558		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000392086	ENST00000403825		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000392086	ENST00000429071		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000392086	ENST00000535603		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-intron	ENST00000392086	ENST00000486688		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000463463	ENST00000005558		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000463463	ENST00000403825		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000463463	ENST00000429071		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-3CDS	ENST00000463463	ENST00000535603		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
intron-intron	ENST00000463463	ENST00000486688		ChiTaRS3.1			AI631194	DNAJB2	chr2	220149997	-	IFRD1	chr7	112095892	-
5CDS-3UTR	ENST00000261921	ENST00000261921		ChiTaRS3.1			AI631494	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
5CDS-3UTR	ENST00000261921	ENST00000567675		ChiTaRS3.1			AI631494	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000261921		ChiTaRS3.1			AI631494	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000567675		ChiTaRS3.1			AI631494	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3CDS	ENST00000481646	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000481646	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000481646	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000481646	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000481646	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000481646	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000469044	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000469044	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000469044	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000469044	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000469044	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000469044	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000491704	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000491704	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000491704	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000491704	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000491704	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000491704	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000358441	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000358441	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000358441	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000358441	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000358441	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000358441	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000489213	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000489213	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000489213	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000489213	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000489213	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000489213	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000461822	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000461822	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000461822	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000461822	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000461822	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000461822	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000485396	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000485396	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000485396	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000485396	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000485396	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000485396	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000471453	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000471453	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000471453	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000471453	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000471453	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000471453	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000470821	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000470821	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000470821	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000470821	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000470821	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000470821	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000393058	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000393058	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000393058	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000393058	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000393058	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000393058	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000538260	ENST00000450966		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000538260	ENST00000251722		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-3CDS	ENST00000538260	ENST00000427112		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-5UTR	ENST00000538260	ENST00000496298		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000538260	ENST00000409945		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
intron-intron	ENST00000538260	ENST00000443711		ChiTaRS3.1			AI631514	ARMC8	chr3	137906828	+	USP40	chr2	234398073	-
3UTR-3CDS	ENST00000262395	ENST00000262395		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
3UTR-3CDS	ENST00000262395	ENST00000444415		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
3UTR-intron	ENST00000262395	ENST00000262396		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
Frame-shit	ENST00000444415	ENST00000262395		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
In-frame	ENST00000444415	ENST00000444415		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
5CDS-intron	ENST00000444415	ENST00000262396		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
intron-3CDS	ENST00000262396	ENST00000262395		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
intron-3CDS	ENST00000262396	ENST00000444415		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
intron-intron	ENST00000262396	ENST00000262396		ChiTaRS3.1			AI632035	TRAF4	chr17	27076904	-	TRAF4	chr17	27075966	+
intron-intron	ENST00000325351	ENST00000262135		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000379925		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000563746		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000564374		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568009		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000568653		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000325351	ENST00000566096		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000262135		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000379925		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000563746		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000564374		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568009		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000568653		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
intron-intron	ENST00000591479	ENST00000566096		ChiTaRS3.1			AI638365	ZNF784	chr19	56132203	+	RPGRIP1L	chr16	53689424	+
3UTR-3CDS	ENST00000538546	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000538546	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000538546	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000535623	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535623	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535623	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000535011	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535011	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000535011	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000542996	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000542996	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000542996	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000249364	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000249364	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000249364	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-3CDS	ENST00000449187	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000449187	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
3UTR-intron	ENST00000449187	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-3CDS	ENST00000479257	ENST00000332427		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-intron	ENST00000479257	ENST00000537507		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-intron	ENST00000479257	ENST00000540510		ChiTaRS3.1			AI650365	CALU	chr7	128410461	-	GPR19	chr12	12815346	+
intron-intron	ENST00000367302	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000367302	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000367302	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000367302	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000367302	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000367302	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-intron	ENST00000367302	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367296	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367296	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367296	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367296	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367296	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367296	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367296	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000295624	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000295624	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000295624	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000295624	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000295624	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000295624	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000295624	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367297	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367297	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367297	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367297	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367297	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367297	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367297	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367300	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367300	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367300	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367300	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367300	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367300	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367300	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367295	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367295	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367295	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367295	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367295	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-3UTR	ENST00000367295	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
3UTR-intron	ENST00000367295	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-intron	ENST00000469130	ENST00000367302		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000469130	ENST00000367296		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000469130	ENST00000295624		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000469130	ENST00000367297		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000469130	ENST00000367300		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-3UTR	ENST00000469130	ENST00000367295		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-intron	ENST00000469130	ENST00000469130		ChiTaRS3.1			AI651824	NAV1	chr1	201794016	-	NAV1	chr1	201795880	-
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			AI651945	MEG3	chr14	101312666	-	MEG3	chr14	101317679	-
5CDS-3UTR	ENST00000360184	ENST00000360184		ChiTaRS3.1			AI652615	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516912	-
5CDS-intron	ENST00000360184	ENST00000556791		ChiTaRS3.1			AI652615	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516912	-
intron-3UTR	ENST00000556791	ENST00000360184		ChiTaRS3.1			AI652615	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516912	-
intron-intron	ENST00000556791	ENST00000556791		ChiTaRS3.1			AI652615	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516912	-
intron-intron	ENST00000394773	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000331886		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000394147		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000551156		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000549079		ChiTaRS3.1			AI653235	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000375078	ENST00000394233		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000375078	ENST00000454898		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000375078	ENST00000536817		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000375078	ENST00000370214		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000375078	ENST00000315713		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000375078	ENST00000484213		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000394233		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000454898		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000536817		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000370214		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000315713		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000489020	ENST00000484213		ChiTaRS3.1			AI653395	CAMK2N1	chr1	20809860	+	ABCD3	chr1	94945591	-
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			AI653674	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000361339	ENST00000361339		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000426508		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000439987		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000361339		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000426508		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000439987		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000361339		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000426508		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000439987		ChiTaRS3.1			AI654565	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000264027	ENST00000356842		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000359629		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000538214		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000537768		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000335712		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000477659		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000264027	ENST00000358510		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000356842		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000359629		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000538214		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000537768		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000335712		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000477659		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000534230	ENST00000358510		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000356842		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000359629		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000538214		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000537768		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000335712		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000477659		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000392789	ENST00000358510		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000356842		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000359629		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000538214		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000537768		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000335712		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000477659		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
intron-intron	ENST00000528991	ENST00000358510		ChiTaRS3.1			AI655175	SC5D	chr11	121169803	-	BCL11A	chr2	60733201	+
5CDS-3UTR	ENST00000261921	ENST00000261921		ChiTaRS3.1			AI655545	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
5CDS-3UTR	ENST00000261921	ENST00000567675		ChiTaRS3.1			AI655545	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000261921		ChiTaRS3.1			AI655545	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000567675		ChiTaRS3.1			AI655545	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-intron	ENST00000259873	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000506373	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000472229	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000454427	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000477010	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000437247	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000430402	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000489289	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000418070	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000426945	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000468755	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000412843	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000327800	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000469397	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000400594	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000451032	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000493769	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000440992	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
3UTR-intron	ENST00000412451	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
3UTR-intron	ENST00000428224	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
3UTR-intron	ENST00000472444	ENST00000452313		ChiTaRS3.1			AI655595	MRPS18B	chr6	1926336	-	NPIPB7	chr16	28975450	+
intron-intron	ENST00000409911	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409911	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409884	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409093	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409088	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000409282	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000400959		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000367025		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000367026		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000367024		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000010338		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000367023		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000477431		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-intron	ENST00000491242	ENST00000467830		ChiTaRS3.1			AI656375	LRRTM4	chr2	76999362	-	TRAF3IP3	chr1	209952293	-
intron-3CDS	ENST00000316403	ENST00000358704		ChiTaRS3.1			AI656735	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000546343	ENST00000358704		ChiTaRS3.1			AI656735	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000560366	ENST00000358704		ChiTaRS3.1			AI656735	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000405140	ENST00000358704		ChiTaRS3.1			AI656735	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000523500	ENST00000358704		ChiTaRS3.1			AI656735	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3UTR	ENST00000339208	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000339208	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000339208	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000346661	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000346661	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000346661	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000345615	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000345615	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000345615	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000502449	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000502449	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000502449	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000591288	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000591288	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000591288	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000394378	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000394378	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000394378	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000585472	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000585472	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000585472	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000588194	ENST00000339208		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-3UTR	ENST00000588194	ENST00000346661		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000345615		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000502449		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000591288		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000394378		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000585472		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
intron-intron	ENST00000588194	ENST00000588194		ChiTaRS3.1			AI668864	SYNRG	chr17	35877057	+	SYNRG	chr17	35875859	+
3UTR-3UTR	ENST00000397278	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
3UTR-3UTR	ENST00000426053	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
3UTR-3UTR	ENST00000422706	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
3UTR-3UTR	ENST00000319136	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
intron-3UTR	ENST00000347595	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
intron-3UTR	ENST00000397279	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
intron-3UTR	ENST00000440669	ENST00000455833		ChiTaRS3.1			AI686194	APOL1	chr22	36662420	-	IFFO2	chr1	19234858	+
5CDS-3UTR	ENST00000471660	ENST00000216181		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000471660	ENST00000475726		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000471660	ENST00000401701		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-3UTR	ENST00000263780	ENST00000216181		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000263780	ENST00000475726		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000263780	ENST00000401701		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-3UTR	ENST00000494980	ENST00000216181		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000494980	ENST00000475726		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
5CDS-intron	ENST00000494980	ENST00000401701		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
intron-3UTR	ENST00000472024	ENST00000216181		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
intron-intron	ENST00000472024	ENST00000475726		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
intron-intron	ENST00000472024	ENST00000401701		ChiTaRS3.1			AI686345	CHMP2B	chr3	87302878	-	MYH9	chr22	36678673	+
3UTR-3UTR	ENST00000334527	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000334527	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000334527	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000334527	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000334527	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000334527	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000299734	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000299734	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000299734	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000299734	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000299734	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000299734	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000585098	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000585098	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000585098	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000585098	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000585098	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000585098	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000380025	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000380025	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000380025	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000380025	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000380025	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000380025	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000402554	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000402554	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000402554	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000402554	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-3UTR	ENST00000402554	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
3UTR-intron	ENST00000402554	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000583066	ENST00000334527		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000583066	ENST00000299734		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000583066	ENST00000585098		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000583066	ENST00000380025		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-3UTR	ENST00000583066	ENST00000402554		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000583066	ENST00000583066		ChiTaRS3.1			AI693825	NDEL1	chr17	8370794	-	NDEL1	chr17	8370861	+
intron-intron	ENST00000396353	ENST00000396353		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000396355		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000396354		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000342673		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000571896		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396353		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396355		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396354		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000342673		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000571896		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396353		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396355		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396354		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000342673		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000571896		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396353		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396355		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396354		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000342673		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000571896		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396353		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396355		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396354		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000342673		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000571896		ChiTaRS3.1			AI695545	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-3UTR	ENST00000252711	ENST00000252711		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000471378		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000252711	ENST00000404554		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000307300		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000407129		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000471378	ENST00000252711		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000471378		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000471378	ENST00000404554		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000307300		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000407129		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000404554	ENST00000252711		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000471378		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000404554	ENST00000404554		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000307300		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000407129		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000307300	ENST00000252711		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000471378		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000307300	ENST00000404554		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000307300		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000407129		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000407129	ENST00000252711		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000471378		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000407129	ENST00000404554		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000307300		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000407129		ChiTaRS3.1			AI733764	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
5CDS-3UTR	ENST00000339374	ENST00000263857		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-3UTR	ENST00000339374	ENST00000409681		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-intron	ENST00000339374	ENST00000483538		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
intron-3UTR	ENST00000555177	ENST00000263857		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
intron-3UTR	ENST00000555177	ENST00000409681		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
intron-intron	ENST00000555177	ENST00000483538		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-3UTR	ENST00000382985	ENST00000263857		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-3UTR	ENST00000382985	ENST00000409681		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-intron	ENST00000382985	ENST00000483538		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-3UTR	ENST00000556670	ENST00000263857		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-3UTR	ENST00000556670	ENST00000409681		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
5CDS-intron	ENST00000556670	ENST00000483538		ChiTaRS3.1			AI742345	METTL17	chr14	21464791	-	POLR1A	chr2	86254117	-
intron-3UTR	ENST00000256682	ENST00000256682		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000256682	ENST00000447318		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000256682	ENST00000541959		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000256682	ENST00000541967		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-3UTR	ENST00000447318	ENST00000256682		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000447318	ENST00000447318		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000447318	ENST00000541959		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000447318	ENST00000541967		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-3UTR	ENST00000541959	ENST00000256682		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541959	ENST00000447318		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541959	ENST00000541959		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541959	ENST00000541967		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-3UTR	ENST00000541967	ENST00000256682		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541967	ENST00000447318		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541967	ENST00000541959		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000541967	ENST00000541967		ChiTaRS3.1			AI742354	ARF3	chr12	49331389	+	ARF3	chr12	49331802	-
intron-intron	ENST00000409484	ENST00000409484		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-intron	ENST00000409484	ENST00000468308		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-3UTR	ENST00000409484	ENST00000321348		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-3UTR	ENST00000409484	ENST00000375252		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-intron	ENST00000468308	ENST00000409484		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-intron	ENST00000468308	ENST00000468308		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-3UTR	ENST00000468308	ENST00000321348		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-3UTR	ENST00000468308	ENST00000375252		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-intron	ENST00000321348	ENST00000409484		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-intron	ENST00000321348	ENST00000468308		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-3UTR	ENST00000321348	ENST00000321348		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-3UTR	ENST00000321348	ENST00000375252		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-intron	ENST00000375252	ENST00000409484		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-intron	ENST00000375252	ENST00000468308		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-3UTR	ENST00000375252	ENST00000321348		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
3UTR-3UTR	ENST00000375252	ENST00000375252		ChiTaRS3.1			AI743715	CYBRD1	chr2	172413092	+	CYBRD1	chr2	172412209	+
intron-intron	ENST00000371191	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371191	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371191	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371191	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000407417	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000407417	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000407417	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000479364	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000479364	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000479364	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371189	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371189	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371189	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-3UTR	ENST00000403491	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000403491	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-3UTR	ENST00000403491	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371187	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371187	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371187	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000485903	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000485903	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000485903	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371185	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371185	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371185	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371184	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-intron	ENST00000371184	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000371184	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000371191		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000407417		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000479364		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000371189		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-3UTR	ENST00000357977	ENST00000403491		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000371187		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000485903		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000371185		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-intron	ENST00000357977	ENST00000371184		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
3UTR-3UTR	ENST00000357977	ENST00000357977		ChiTaRS3.1			AI750575	NFIA	chr1	61923197	-	NFIA	chr1	61922513	+
intron-3UTR	ENST00000367498	ENST00000367498		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-5UTR	ENST00000367498	ENST00000459929		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000367498	ENST00000392007		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-intron	ENST00000367498	ENST00000367497		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000459929	ENST00000367498		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-5UTR	ENST00000459929	ENST00000459929		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000459929	ENST00000392007		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-intron	ENST00000459929	ENST00000367497		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000392007	ENST00000367498		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-5UTR	ENST00000392007	ENST00000459929		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000392007	ENST00000392007		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-intron	ENST00000392007	ENST00000367497		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000367497	ENST00000367498		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-5UTR	ENST00000367497	ENST00000459929		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3UTR	ENST00000367497	ENST00000392007		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-intron	ENST00000367497	ENST00000367497		ChiTaRS3.1			AI750915	IVNS1ABP	chr1	185266972	-	IVNS1ABP	chr1	185267154	+
intron-3CDS	ENST00000435041	ENST00000435041		ChiTaRS3.1			AI751105	UBE2J1	chr6	90052119	+	UBE2J1	chr6	90039612	-
intron-intron	ENST00000395957	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395957	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395957	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395957	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395958	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395958	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395958	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395958	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000457309	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000457309	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000457309	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000457309	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395956	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395956	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395956	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395956	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000353245	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000353245	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000353245	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000353245	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522542	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522542	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522542	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522542	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000521309	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000521309	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000521309	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000521309	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522819	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522819	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522819	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000522819	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395953	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395953	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395953	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395953	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395948	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395948	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395948	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395948	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395951	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395951	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395951	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000395951	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000419477	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000419477	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000419477	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000419477	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000492736	ENST00000285238		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000492736	ENST00000515707		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000492736	ENST00000427699		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-intron	ENST00000492736	ENST00000510891		ChiTaRS3.1			AI761355	YWHAZ	chr8	101951657	+	ABCC3	chr17	48721423	-
intron-3UTR	ENST00000544798	ENST00000542454		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000554311		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000306005		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000539359		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000542454		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000554311		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000306005		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000539359		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000542454		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000554311		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000306005		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000539359		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000542454		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000554311		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000306005		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000539359		ChiTaRS3.1			AI964029	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
5CDS-3UTR	ENST00000523731	ENST00000319006		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000523731	ENST00000528097		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000523731	ENST00000532202		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000319006		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000528097		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
5CDS-3UTR	ENST00000447247	ENST00000532202		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000319006		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000528097		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-3UTR	ENST00000520845	ENST00000532202		ChiTaRS3.1			AK091278	INTS8	chr8	95892446	+	TALDO1	chr11	764906	+
intron-intron	ENST00000316694	ENST00000368921		ChiTaRS3.1			AK091498	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000352886	ENST00000368921		ChiTaRS3.1			AK091498	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000539052	ENST00000368921		ChiTaRS3.1			AK091498	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
intron-intron	ENST00000354098	ENST00000368921		ChiTaRS3.1			AK091498	SHMT1	chr17	18233997	-	MLLT11	chr1	151041267	-
Frame-shit	ENST00000274867	ENST00000206423		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000274867	ENST00000439685		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000274867	ENST00000475181		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000398904	ENST00000206423		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000398904	ENST00000439685		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000398904	ENST00000475181		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000538976	ENST00000206423		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
Frame-shit	ENST00000538976	ENST00000439685		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
5CDS-intron	ENST00000538976	ENST00000475181		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000405961	ENST00000206423		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000405961	ENST00000439685		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-intron	ENST00000405961	ENST00000475181		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000494405	ENST00000206423		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-3CDS	ENST00000494405	ENST00000439685		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
intron-intron	ENST00000494405	ENST00000475181		ChiTaRS3.1			AK091749	DAAM2	chr6	39847030	+	CCDC80	chr3	112328854	-
3UTR-3UTR	ENST00000450849	ENST00000450849		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-intron	ENST00000450849	ENST00000301260		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-intron	ENST00000450849	ENST00000595916		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-3UTR	ENST00000450849	ENST00000398448		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
3UTR-3UTR	ENST00000450849	ENST00000600960		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000450849		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000301260	ENST00000301260		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000301260	ENST00000595916		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000398448		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000301260	ENST00000600960		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000450849		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000595916	ENST00000301260		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000595916	ENST00000595916		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000398448		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000595916	ENST00000600960		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000450849		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000398448	ENST00000301260		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000398448	ENST00000595916		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000398448		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000398448	ENST00000600960		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000450849		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000600960	ENST00000301260		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-intron	ENST00000600960	ENST00000595916		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000398448		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3UTR	ENST00000600960	ENST00000600960		ChiTaRS3.1			AK092298	ATCAY	chr19	3927687	+	ATCAY	chr19	3924666	+
intron-3CDS	ENST00000304239	ENST00000321153		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000304239	ENST00000532004		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000304239	ENST00000530797		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-3CDS	ENST00000337995	ENST00000321153		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000337995	ENST00000532004		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000337995	ENST00000530797		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-3CDS	ENST00000586540	ENST00000321153		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000586540	ENST00000532004		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
intron-intron	ENST00000586540	ENST00000530797		ChiTaRS3.1			AK092774	ZNF420	chr19	37529549	+	RPLP2	chr11	810275	+
5CDS-intron	ENST00000306085	ENST00000598441		ChiTaRS3.1			AK092927	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
5CDS-intron	ENST00000306085	ENST00000221448		ChiTaRS3.1			AK092927	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-intron	ENST00000487252	ENST00000598441		ChiTaRS3.1			AK092927	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-intron	ENST00000487252	ENST00000221448		ChiTaRS3.1			AK092927	TRIM56	chr7	100731366	+	SNRNP70	chr19	49609222	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657724	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
Frame-shit	ENST00000053867	ENST00000373463		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
5CDS-intron	ENST00000053867	ENST00000329151		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
5CDS-5UTR	ENST00000053867	ENST00000475208		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-3CDS	ENST00000589265	ENST00000373463		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-intron	ENST00000589265	ENST00000329151		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-5UTR	ENST00000589265	ENST00000475208		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-3CDS	ENST00000589923	ENST00000373463		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-intron	ENST00000589923	ENST00000329151		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
3UTR-5UTR	ENST00000589923	ENST00000475208		ChiTaRS3.1			AW062637	GRN	chr17	42428455	-	TMEM54	chr1	33361292	+
intron-intron	ENST00000553277	ENST00000553277		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000243077		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000338962		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000554174		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553277	ENST00000553446		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000553277		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000243077		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000338962		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000554174		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
5CDS-intron	ENST00000243077	ENST00000553446		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000553277		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000243077		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000338962		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000554174		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000338962	ENST00000553446		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000553277		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000243077		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000338962		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000554174		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000554174	ENST00000553446		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000553277		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000243077		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000338962		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000554174		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-intron	ENST00000553446	ENST00000553446		ChiTaRS3.1			AW366968	LRP1	chr12	57605313	-	LRP1	chr12	57603806	+
intron-3CDS	ENST00000357668	ENST00000390237		ChiTaRS3.1			AW380679	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000518721	ENST00000390237		ChiTaRS3.1			AW380679	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000520625	ENST00000390237		ChiTaRS3.1			AW380679	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-intron	ENST00000438796	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000438796	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000414675	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000441090	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000334859	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000425562	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000493726	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000559624		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000382727		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000263791		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000560648		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000536618	ENST00000559311		ChiTaRS3.1			AW390019	LRCH3	chr3	197605525	-	EIF2AK4	chr15	40325451	+
intron-intron	ENST00000278174	ENST00000261574		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000490680		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000539640		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000278174	ENST00000493492		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000261574		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000490680		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000539640		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000530907	ENST00000493492		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000261574		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000490680		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000539640		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000528120	ENST00000493492		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000261574		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000490680		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000539640		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-intron	ENST00000532261	ENST00000493492		ChiTaRS3.1			AW606637	BTBD10	chr11	13441257	-	IPO5	chr13	98655029	-
intron-3CDS	ENST00000343958	ENST00000395184		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000503995		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000506421		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000395183		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000343958	ENST00000264343		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000546711	ENST00000395184		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000503995		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000506421		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000395183		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000546711	ENST00000264343		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000549499	ENST00000395184		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000503995		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000506421		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000395183		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000549499	ENST00000264343		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-3CDS	ENST00000550368	ENST00000395184		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000503995		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000506421		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000395183		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000550368	ENST00000264343		ChiTaRS3.1			AW749259	FGD6	chr12	95491480	-	ARHGAP24	chr4	86916061	-
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY840545	KMT2A	chr11	118358382	+	MLLT3	chr9	20403549	-
intron-intron	ENST00000376059	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376059	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376049	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000376049	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000414149	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000414149	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000419376	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000419376	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000425748	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000425748	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000416422	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000416422	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000413349	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000413349	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000415830	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000415830	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383474	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383474	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000488491	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000488491	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383473	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000383473	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000440907	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000440907	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000549432	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000549432	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000424944	ENST00000299601		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
5CDS-intron	ENST00000424944	ENST00000315141		ChiTaRS3.1			AW819606	AIF1	chr6	2915035	-	LEO1	chr15	52230523	+
intron-intron	ENST00000520539	ENST00000520539		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000220959		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000518205		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000521922		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000520539	ENST00000519528		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000520539		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000220959		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000518205		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000521922		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000220959	ENST00000519528		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000520539		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000220959		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000518205		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000521922		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000518205	ENST00000519528		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000520539		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000220959		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000518205		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000521922		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000521922	ENST00000519528		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000520539		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000220959		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000518205		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000521922		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000519528	ENST00000519528		ChiTaRS3.1			AW862829	UBR5	chr8	103409684	+	UBR5	chr8	103405560	-
intron-intron	ENST00000393240	ENST00000244769		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000393240	ENST00000436367		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000393240	ENST00000467008		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000244769		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000436367		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000261205	ENST00000467008		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000244769		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000436367		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000457153	ENST00000467008		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000244769		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000436367		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000552744	ENST00000467008		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000244769		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000436367		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000549454	ENST00000467008		ChiTaRS3.1			AW875069	SYT1	chr12	79470439	+	ATXN1	chr6	16562341	-
intron-intron	ENST00000400198	ENST00000449576		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396099		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000425416		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000256720		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396097		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000404113		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000464517		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000400198	ENST00000396098		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000449576		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396099		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000425416		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000256720		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396097		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000404113		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000464517		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000472226	ENST00000396098		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000449576		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396099		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000425416		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000256720		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396097		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000404113		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000464517		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-intron	ENST00000375926	ENST00000396098		ChiTaRS3.1			AW889856	ARGLU1	chr13	107210889	+	LPIN1	chr2	11938938	+
intron-3UTR	ENST00000403729	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000403729	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000482406	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000482406	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000404191	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000404191	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000346652	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000346652	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000307333	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000307333	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3UTR	ENST00000295465	ENST00000381086		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000275521		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000381083		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-intron	ENST00000295465	ENST00000465642		ChiTaRS3.1			AX747144	ANTXR2	chr4	80828557	-	IGFBP3	chr7	45952180	-
intron-3CDS	ENST00000251642	ENST00000280886		ChiTaRS3.1			AX803819	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
intron-3CDS	ENST00000251642	ENST00000381496		ChiTaRS3.1			AX803819	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
intron-intron	ENST00000251642	ENST00000540204		ChiTaRS3.1			AX803819	DHX58	chr17	40260058	+	DIP2C	chr10	460042	-
5UTR-3CDS	ENST00000344063	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000344063	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000344063	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000344063	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000431533	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000431533	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000431533	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000431533	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000428193	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000428193	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000428193	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000428193	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000558815	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000558815	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000558815	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000558815	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000560583	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000560583	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560583	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560583	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-3CDS	ENST00000560055	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-5UTR	ENST00000560055	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560055	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
5UTR-intron	ENST00000560055	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000559463	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000559463	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000559463	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000559463	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000558131	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000558131	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558131	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558131	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000558752	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000558752	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558752	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000558752	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-3CDS	ENST00000458349	ENST00000229270		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-5UTR	ENST00000458349	ENST00000396705		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000458349	ENST00000488464		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
intron-intron	ENST00000458349	ENST00000535434		ChiTaRS3.1			BC009885	RPL28	chr19	55897311	-	TPI1	chr12	6976702	+
3UTR-3CDS	ENST00000422256	ENST00000290776		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000537605		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000535318		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-5UTR	ENST00000422256	ENST00000565874		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
3UTR-intron	ENST00000422256	ENST00000565951		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-3CDS	ENST00000470416	ENST00000290776		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000537605		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000535318		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-5UTR	ENST00000470416	ENST00000565874		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-intron	ENST00000470416	ENST00000565951		ChiTaRS3.1			BC010627	PPP2R2D	chr10	133769311	+	CPNE2	chr16	57144810	+
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006738	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000306065	ENST00000306065		ChiTaRS3.1			BE079586	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000306065	ENST00000587352		ChiTaRS3.1			BE079586	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-3CDS	ENST00000587352	ENST00000306065		ChiTaRS3.1			BE079586	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000587352	ENST00000587352		ChiTaRS3.1			BE079586	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000242317	ENST00000233146		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000543555		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000406134		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000242317	ENST00000461394		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000233146		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000543555		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000406134		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000545019	ENST00000461394		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000233146		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000543555		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000406134		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000488369	ENST00000461394		ChiTaRS3.1			BE143916	DNAI1	chr9	34485935	+	MSH2	chr2	47624999	+
intron-intron	ENST00000372445	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372445	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000436109	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372444	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372449	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000259751	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000372452	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000438588	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000533820		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000533129		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000524773		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000279247		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000527469		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000483640	ENST00000527323		ChiTaRS3.1			BE143996	TJAP1	chr6	43472113	-	CAPN1	chr11	64955068	-
intron-intron	ENST00000302640	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000302640	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000354582	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000423119	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000456211	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000357086	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000544951	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000443694	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000302640		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000354582		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000423119		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000456211		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000357086		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000544951		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000443694		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000463980	ENST00000463980		ChiTaRS3.1			BE175795	ITPR1	chr3	4782027	-	ITPR1	chr1	33484536	-
intron-intron	ENST00000299441	ENST00000252996		ChiTaRS3.1			BE672235	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000299441	ENST00000609045		ChiTaRS3.1			BE672235	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
Frame-shit	ENST00000519973	ENST00000442101		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
5CDS-5UTR	ENST00000519973	ENST00000498824		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
5CDS-5UTR	ENST00000519973	ENST00000239882		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-3CDS	ENST00000517923	ENST00000442101		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-5UTR	ENST00000517923	ENST00000498824		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
intron-5UTR	ENST00000517923	ENST00000239882		ChiTaRS3.1			BE673086	SLC25A37	chr8	23428966	-	ELF1	chr13	41517102	+
3UTR-3CDS	ENST00000534336	ENST00000393561		ChiTaRS3.1			BE775268	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-3CDS	ENST00000534336	ENST00000222399		ChiTaRS3.1			BE775268	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000393560		ChiTaRS3.1			BE775268	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000474380		ChiTaRS3.1			BE775268	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
5CDS-intron	ENST00000517296	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000517296	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389773	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000389774	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000336963	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
5CDS-intron	ENST00000356099	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000352035		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000590151		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000353196		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000537919		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000393896		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-intron	ENST00000469872	ENST00000588779		ChiTaRS3.1			BE840465	ARHGAP8	chr22	45255667	+	ACLY	chr17	40053157	-
intron-3CDS	ENST00000177742	ENST00000366671		ChiTaRS3.1			BE928606	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000177742	ENST00000282549		ChiTaRS3.1			BE928606	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000366671		ChiTaRS3.1			BE928606	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000282549		ChiTaRS3.1			BE928606	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-intron	ENST00000231061	ENST00000330978		ChiTaRS3.1			BE928949	SPARC	chr5	151043775	-	BOLA2	chr16	30078618	+
intron-intron	ENST00000537849	ENST00000330978		ChiTaRS3.1			BE928949	SPARC	chr5	151043775	-	BOLA2	chr16	30078618	+
intron-5UTR	ENST00000349703	ENST00000519097		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000380036		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000406359		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000519097		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000380036		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000406359		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000519097		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000380036		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000406359		ChiTaRS3.1			BF002128	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-3CDS	ENST00000392750	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000392750	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000392750	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000392750	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000473645	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000473645	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000473645	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000497056	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000497056	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000497056	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000492396	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000492396	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000492396	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000461494	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000461494	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000461494	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000470131	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000470131	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000470131	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487947	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487947	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487947	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000471885	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000471885	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000471885	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000313899		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000353341		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000543098		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-3CDS	ENST00000487678	ENST00000352301		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487678	ENST00000508119		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-5UTR	ENST00000487678	ENST00000541060		ChiTaRS3.1			BF096098	PDCD10	chr3	167446632	+	HNRNPD	chr4	83277976	-
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000312675		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000543006		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000312675		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000543006		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000312675		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000543006		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000312675		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000543006		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			BF334499	LPP	chr3	187920361	+	LPP	chr3	187919748	+
intron-5UTR	ENST00000366760	ENST00000366760		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000366760	ENST00000315781		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000366760	ENST00000366759		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-intron	ENST00000366760	ENST00000480897		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000366760		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000315781		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000315781	ENST00000366759		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-intron	ENST00000315781	ENST00000480897		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000366760		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000315781		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-5UTR	ENST00000366759	ENST00000366759		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
5CDS-intron	ENST00000366759	ENST00000480897		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000366760		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000315781		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-5UTR	ENST00000480897	ENST00000366759		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-intron	ENST00000480897	ENST00000480897		ChiTaRS3.1			BF509119	SNAP47	chr1	227935641	-	SNAP47	chr1	227946759	-
intron-3CDS	ENST00000177742	ENST00000366671		ChiTaRS3.1			BF780089	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000177742	ENST00000282549		ChiTaRS3.1			BF780089	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000366671		ChiTaRS3.1			BF780089	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000282549		ChiTaRS3.1			BF780089	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-intron	ENST00000262966	ENST00000398174		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000340852		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000335574		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000376127		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000262966	ENST00000492709		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000398174		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000340852		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000335574		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000376127		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000359935	ENST00000492709		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000398174		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000340852		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000335574		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000376127		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000599840	ENST00000492709		ChiTaRS3.1			BF921237	MPND	chr19	4359126	+	HM13	chr20	30150711	+
intron-intron	ENST00000375592	ENST00000375592		ChiTaRS3.1			BF933334	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-5UTR	ENST00000375592	ENST00000478089		ChiTaRS3.1			BF933334	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-intron	ENST00000478089	ENST00000375592		ChiTaRS3.1			BF933334	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-5UTR	ENST00000478089	ENST00000478089		ChiTaRS3.1			BF933334	FBXO42	chr1	16641933	+	FBXO42	chr1	16621278	+
intron-3UTR	ENST00000261772	ENST00000388825		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000261772	ENST00000521722		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000261772	ENST00000517973		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-3UTR	ENST00000564359	ENST00000388825		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000564359	ENST00000521722		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000564359	ENST00000517973		ChiTaRS3.1			BF954117	AARS	chr16	70287931	+	GPX3	chr5	150407985	+
intron-intron	ENST00000270458	ENST00000376113		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000346226		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000352848		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000393041		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000348750		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000357970		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000259238		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000393040		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000351659		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000316724		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000409400		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
intron-intron	ENST00000270458	ENST00000466111		ChiTaRS3.1			BF963566	CACNG8	chr19	54484133	+	BIN1	chr2	127815247	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			BF985014	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			BF985035	ERGIC1	chr5	172378428	-	ERGIC1	chr5	172378692	+
intron-intron	ENST00000521308	ENST00000399002		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000521308	ENST00000378194		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000521308	ENST00000476791		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000399002		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000378194		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
intron-intron	ENST00000355417	ENST00000476791		ChiTaRS3.1			BF990735	CCDC69	chr5	150562046	-	SPTLC3	chr20	13113411	-
In-frame	ENST00000372811	ENST00000372811		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372811	ENST00000420632		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372811	ENST00000372809		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000372811	ENST00000480630		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000372811		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000420632		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000420632	ENST00000372809		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000420632	ENST00000480630		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000372811		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000420632		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
In-frame	ENST00000372809	ENST00000372809		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
5CDS-3UTR	ENST00000372809	ENST00000480630		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000372811		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000420632		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3CDS	ENST00000480630	ENST00000372809		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
3UTR-3UTR	ENST00000480630	ENST00000480630		ChiTaRS3.1			BF995186	MFSD2A	chr1	40433513	+	MFSD2A	chr1	40434061	-
intron-3UTR	ENST00000393946	ENST00000370558		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000393946	ENST00000535010		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000393946	ENST00000482504		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000525457	ENST00000370558		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000525457	ENST00000535010		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000525457	ENST00000482504		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000527043	ENST00000370558		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000527043	ENST00000535010		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000527043	ENST00000482504		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000526281	ENST00000370558		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000526281	ENST00000535010		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-intron	ENST00000526281	ENST00000482504		ChiTaRS3.1			BF995206	SYT12	chr11	66802087	-	SH3GLB1	chr1	87210438	-
intron-3UTR	ENST00000474855	ENST00000474855		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000272519		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-intron	ENST00000474855	ENST00000420510		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000404963		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000474855	ENST00000470417		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000474855		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000272519		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000272519	ENST00000420510		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000404963		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000272519	ENST00000470417		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000474855		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000272519		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-intron	ENST00000420510	ENST00000420510		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000404963		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000420510	ENST00000470417		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000474855		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000272519		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000404963	ENST00000420510		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000404963		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000404963	ENST00000470417		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000474855		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000272519		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-intron	ENST00000470417	ENST00000420510		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000404963		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
3UTR-3UTR	ENST00000470417	ENST00000470417		ChiTaRS3.1			BG986439	RALB	chr2	121051960	+	RALB	chr2	121051242	+
intron-3UTR	ENST00000368094	ENST00000368094		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000368094	ENST00000361509		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000368094	ENST00000493195		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000361509	ENST00000368094		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000361509	ENST00000361509		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000361509	ENST00000493195		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000493195	ENST00000368094		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000493195	ENST00000361509		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-5UTR	ENST00000493195	ENST00000493195		ChiTaRS3.1			BG999228	IGSF9	chr1	159896945	-	IGSF9	chr1	159897128	+
intron-3UTR	ENST00000585509	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000585509	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000585509	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589297	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000589297	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000591455	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000591455	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000446868	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000446868	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000361101	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000361101	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000589296	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000589296	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000585509		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000589297		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000591455		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000446868		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000361101		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3UTR	ENST00000586175	ENST00000589296		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-intron	ENST00000586175	ENST00000586175		ChiTaRS3.1			BI011564	CYTH1	chr17	76675709	+	CYTH1	chr17	76671504	-
intron-3CDS	ENST00000440768	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000440768	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000359197	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000359197	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000343574	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000343574	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000331340	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000331340	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000349824	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000349824	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000357364	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000357364	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000346667	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000346667	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000438033	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000438033	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000439701	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000439701	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000413698	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000413698	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3CDS	ENST00000492782	ENST00000322644		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-intron	ENST00000492782	ENST00000572844		ChiTaRS3.1			BI059477	IKZF1	chr7	50424953	+	POLR2A	chr17	7404893	-
intron-3UTR	ENST00000521022	ENST00000229264		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521022	ENST00000435982		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000416984	ENST00000229264		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000416984	ENST00000435982		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000521777	ENST00000229264		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521777	ENST00000435982		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000397363	ENST00000229264		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000397363	ENST00000435982		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-3UTR	ENST00000521070	ENST00000229264		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
intron-intron	ENST00000521070	ENST00000435982		ChiTaRS3.1			BM691769	INTS9	chr8	28654528	+	GNB3	chr12	6956490	+
Frame-shit	ENST00000330634	ENST00000330634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000398337		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000392634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000330634	ENST00000481338		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-3CDS	ENST00000398337	ENST00000330634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000398337		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000392634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000398337	ENST00000481338		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
Frame-shit	ENST00000392634	ENST00000330634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000398337		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000392634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
5CDS-intron	ENST00000392634	ENST00000481338		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-3CDS	ENST00000481338	ENST00000330634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000398337		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000392634		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-intron	ENST00000481338	ENST00000481338		ChiTaRS3.1			BM720359	INF2	chr14	105179256	-	INF2	chr14	105180902	-
intron-3UTR	ENST00000528282	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530481	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000445890	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000337057	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530757	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000392427	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000368128	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000527411	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000524581	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000525271	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000525193	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000527659	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000529208	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000531410	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
intron-3UTR	ENST00000530148	ENST00000336314		ChiTaRS3.1			BM849744	EPB41L2	chr6	131277558	-	LARP1	chr5	154196355	+
3UTR-3UTR	ENST00000306107	ENST00000306107		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000306107	ENST00000472644		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000306107	ENST00000481337		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000306107	ENST00000486979		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000306107	ENST00000389927		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000306107		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000472644		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000472644	ENST00000481337		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000472644	ENST00000486979		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000472644	ENST00000389927		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000306107		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000472644		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000481337	ENST00000481337		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000481337	ENST00000486979		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000481337	ENST00000389927		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000306107		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000472644		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000486979	ENST00000481337		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-intron	ENST00000486979	ENST00000486979		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3UTR	ENST00000486979	ENST00000389927		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000306107		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000472644		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000389927	ENST00000481337		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-intron	ENST00000389927	ENST00000486979		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
3UTR-3UTR	ENST00000389927	ENST00000389927		ChiTaRS3.1			BM983937	ALCAM	chr3	105294701	-	ALCAM	chr3	105294617	+
intron-3CDS	ENST00000544484	ENST00000544484		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000357008		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000309577		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544484	ENST00000544040		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000544484	ENST00000540960		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000544484		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000357008		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000309577		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000357008	ENST00000544040		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000357008	ENST00000540960		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000544484		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000357008		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000309577		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000309577	ENST00000544040		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000309577	ENST00000540960		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000544484		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000357008		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000309577		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000544040	ENST00000544040		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000544040	ENST00000540960		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000544484		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000357008		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000309577		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-3CDS	ENST00000540960	ENST00000544040		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
intron-5UTR	ENST00000540960	ENST00000540960		ChiTaRS3.1			BM993866	CHD4	chr12	6679616	+	CHD4	chr12	6691366	-
5CDS-3UTR	ENST00000268171	ENST00000394906		ChiTaRS3.1			BQ102508	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-3UTR	ENST00000268171	ENST00000394908		ChiTaRS3.1			BQ102508	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-3UTR	ENST00000268171	ENST00000585169		ChiTaRS3.1			BQ102508	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
5CDS-5UTR	ENST00000268171	ENST00000577789		ChiTaRS3.1			BQ102508	FURIN	chr15	91424801	-	FLOT2	chr17	27207151	+
intron-3UTR	ENST00000418115	ENST00000557457		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000418115	ENST00000333244		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000454011	ENST00000557457		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000454011	ENST00000333244		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000422781	ENST00000557457		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000422781	ENST00000333244		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000265538	ENST00000557457		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
intron-3UTR	ENST00000265538	ENST00000333244		ChiTaRS3.1			BQ355255	RHOA	chr3	49397743	+	AHNAK2	chr14	105404366	+
5CDS-intron	ENST00000451137	ENST00000263734		ChiTaRS3.1			BQ366659	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
5CDS-intron	ENST00000451137	ENST00000467888		ChiTaRS3.1			BQ366659	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
intron-intron	ENST00000480413	ENST00000263734		ChiTaRS3.1			BQ366659	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
intron-intron	ENST00000480413	ENST00000467888		ChiTaRS3.1			BQ366659	CYR61	chr1	86048189	-	EPAS1	chr2	46588319	-
3UTR-3UTR	ENST00000265295	ENST00000265295		ChiTaRS3.1			BQ937538	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
3UTR-intron	ENST00000265295	ENST00000510751		ChiTaRS3.1			BQ937538	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
intron-3UTR	ENST00000510751	ENST00000265295		ChiTaRS3.1			BQ937538	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
intron-intron	ENST00000510751	ENST00000510751		ChiTaRS3.1			BQ937538	SPDL1	chr5	169031573	-	SPDL1	chr5	169031603	+
3UTR-3UTR	ENST00000545225	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000545225	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000545225	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000590720	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000590720	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000541124	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000541124	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592578	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592578	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000441946	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000441946	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3UTR	ENST00000293362	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-intron	ENST00000293362	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000545225		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000590720		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000541124		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000592578		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000441946		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-3UTR	ENST00000592169	ENST00000293362		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
intron-intron	ENST00000592169	ENST00000592169		ChiTaRS3.1			BU678578	PSME3	chr17	40995206	-	PSME3	chr17	40995091	+
3UTR-3CDS	ENST00000410026	ENST00000410026		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000410026	ENST00000409510		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000410026	ENST00000425611		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000410026		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000409510		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-3CDS	ENST00000409510	ENST00000425611		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000410026		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000409510		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
3UTR-3CDS	ENST00000425611	ENST00000425611		ChiTaRS3.1			BU679875	NABP1	chr2	192550672	-	NABP1	chr2	192550467	+
intron-5UTR	ENST00000267103	ENST00000267103		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000267103	ENST00000548632		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000267103	ENST00000549488		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-5UTR	ENST00000548632	ENST00000267103		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000548632	ENST00000548632		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000548632	ENST00000549488		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-5UTR	ENST00000549488	ENST00000267103		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000549488	ENST00000548632		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-intron	ENST00000549488	ENST00000549488		ChiTaRS3.1			CB046467	C12orf10	chr12	53693868	+	C12orf10	chr12	53693503	+
intron-3CDS	ENST00000375499	ENST00000375499		ChiTaRS3.1			CB240554	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-intron	ENST00000375499	ENST00000466613		ChiTaRS3.1			CB240554	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-3CDS	ENST00000466613	ENST00000375499		ChiTaRS3.1			CB240554	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
intron-intron	ENST00000466613	ENST00000466613		ChiTaRS3.1			CB240554	SDHB	chr1	17349187	+	SDHB	chr1	17350563	-
3UTR-3CDS	ENST00000343837	ENST00000343837		ChiTaRS3.1			CB852757	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
3UTR-intron	ENST00000343837	ENST00000496807		ChiTaRS3.1			CB852757	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
intron-3CDS	ENST00000496807	ENST00000343837		ChiTaRS3.1			CB852757	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
intron-intron	ENST00000496807	ENST00000496807		ChiTaRS3.1			CB852757	SNTN	chr3	63649882	-	SNTN	chr3	63649623	+
Frame-shit	ENST00000461783	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000461783	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
intron-3CDS	ENST00000449545	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
intron-intron	ENST00000449545	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000367174	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000367174	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000456144	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000456144	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000318981	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000318981	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000360366	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000360366	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000529824	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000529824	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
Frame-shit	ENST00000456877	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000456877	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000528391	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000528391	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
In-frame	ENST00000275246	ENST00000367166		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
5CDS-intron	ENST00000275246	ENST00000480390		ChiTaRS3.1			CN479315	TIAM2	chr6	155578137	-	TFB1M	chr6	155581444	-
intron-intron	ENST00000238855	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238855	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000422803	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000238856	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409933	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000409183	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000272321		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409199		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409120		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000398544		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409562		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000487769	ENST00000409835		ChiTaRS3.1			CR747938	AFTPH	chr2	64803916	+	WDPCP	chr2	63383853	+
intron-intron	ENST00000527986	ENST00000527986		ChiTaRS3.1			CV423994	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000527986	ENST00000528337		ChiTaRS3.1			CV423994	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000528337	ENST00000527986		ChiTaRS3.1			CV423994	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000528337	ENST00000528337		ChiTaRS3.1			CV423994	WAC-AS1	chr10	28817128	+	WAC-AS1	chr10	28816429	+
intron-intron	ENST00000393721	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000393721	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370028	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000350060	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000370016	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000537206	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000393721		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000370028		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000350060		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000370016		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000537206		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
intron-intron	ENST00000467421	ENST00000467421		ChiTaRS3.1			EL583436	ARHGAP4	chrX	153191215	+	ARHGAP4	chrX	153191338	-
3UTR-3UTR	ENST00000491148	ENST00000491148		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000282957		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000498639		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000491148		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000282957		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000498639		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000491148		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000282957		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000498639		ChiTaRS3.1			T10608	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
intron-3CDS	ENST00000599564	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-3CDS	ENST00000599564	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-3CDS	ENST00000599564	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000599564	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000599564	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000599564	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000317991	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000317991	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000317991	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000317991	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000317991	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000317991	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-3CDS	ENST00000504615	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-3CDS	ENST00000504615	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-3CDS	ENST00000504615	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-intron	ENST00000504615	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-intron	ENST00000504615	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5UTR-intron	ENST00000504615	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000411896	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000411896	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000411896	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000411896	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000411896	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000411896	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000424536	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000424536	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
Frame-shit	ENST00000424536	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000424536	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000424536	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
5CDS-intron	ENST00000424536	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-3CDS	ENST00000598073	ENST00000380525		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-3CDS	ENST00000598073	ENST00000397111		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-3CDS	ENST00000598073	ENST00000278224		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000598073	ENST00000470221		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000598073	ENST00000401769		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-intron	ENST00000598073	ENST00000397114		ChiTaRS3.1			AI300436	GRAMD1A	chr19	35491390	+	CARS	chr11	3039741	-
intron-5UTR	ENST00000427025	ENST00000331825		ChiTaRS3.1			AK092744	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000343505	ENST00000331825		ChiTaRS3.1			AK092744	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
intron-5UTR	ENST00000479393	ENST00000331825		ChiTaRS3.1			AK092744	NHSL1	chr6	138767927	-	FTL	chr19	49468566	+
5CDS-intron	ENST00000358763	ENST00000358763		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5CDS-intron	ENST00000358763	ENST00000332840		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5CDS-intron	ENST00000358763	ENST00000467095		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5CDS-intron	ENST00000332840	ENST00000358763		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5CDS-intron	ENST00000332840	ENST00000332840		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5CDS-intron	ENST00000332840	ENST00000467095		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
intron-intron	ENST00000467095	ENST00000358763		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
intron-intron	ENST00000467095	ENST00000332840		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
intron-intron	ENST00000467095	ENST00000467095		ChiTaRS3.1			DQ655947	SYN3	chr22	33376629	-	SYN3	chr22	33453815	+
5UTR-3CDS	ENST00000218089	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-5UTR	ENST00000218089	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-5UTR	ENST00000218089	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-5UTR	ENST00000218089	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-5UTR	ENST00000218089	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
5UTR-5UTR	ENST00000218089	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-3CDS	ENST00000469481	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-5UTR	ENST00000469481	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-5UTR	ENST00000469481	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-5UTR	ENST00000469481	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-5UTR	ENST00000469481	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
3UTR-5UTR	ENST00000469481	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-3CDS	ENST00000354548	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000354548	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000354548	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000354548	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000354548	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000354548	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-3CDS	ENST00000371160	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371160	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371160	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371160	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371160	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371160	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-3CDS	ENST00000371157	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371157	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371157	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371157	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371157	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371157	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-3CDS	ENST00000371145	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371145	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371145	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371145	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371145	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371145	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-3CDS	ENST00000371144	ENST00000218089		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371144	ENST00000354548		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371144	ENST00000371160		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371144	ENST00000371157		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371144	ENST00000371145		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-5UTR	ENST00000371144	ENST00000371144		ChiTaRS3.1			DQ655920	STAG2	chrX	123094655	-	STAG2	chrX	123164874	+
intron-intron	ENST00000409514	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409514	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409514	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409514	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409098	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409098	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409098	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409098	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409394	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409394	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409394	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409394	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000258416	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000258416	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000258416	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000258416	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409495	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409495	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409495	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409495	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409167	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409167	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409167	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409167	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409322	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409322	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409322	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000409322	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000479834	ENST00000411486		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000479834	ENST00000441687		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000479834	ENST00000432087		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
intron-intron	ENST00000479834	ENST00000434039		ChiTaRS3.1			FJ423746	EIF4E2	chr2	233421124	-	HJURP	chr2	234749255	+
5UTR-3CDS	ENST00000332149	ENST00000398907		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000398905		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000332149	ENST00000288319		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398897		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398911		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398910		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000417133		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000442448		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000453032		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000398919		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000429727		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000332149	ENST00000485493		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398907		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000398905		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000398585	ENST00000288319		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398897		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398911		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398910		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000417133		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000442448		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000453032		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000398919		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000429727		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000398585	ENST00000485493		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398907		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000398905		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000458356	ENST00000288319		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398897		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398911		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398910		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000417133		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000442448		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000453032		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000398919		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000429727		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-intron	ENST00000458356	ENST00000485493		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398907		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000398905		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000497881	ENST00000288319		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398897		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398911		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398910		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000417133		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000442448		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000453032		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000398919		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000429727		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000497881	ENST00000485493		ChiTaRS3.1			FJ423744	TMPRSS2	chr21	42880007	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000268483	ENST00000053468		ChiTaRS3.1			FJ423748	TXNL4B	chr16	72094011	-	MRPS10	chr6	42176038	+
intron-3CDS	ENST00000423037	ENST00000053468		ChiTaRS3.1			FJ423748	TXNL4B	chr16	72094011	-	MRPS10	chr6	42176038	+
intron-3CDS	ENST00000426362	ENST00000053468		ChiTaRS3.1			FJ423748	TXNL4B	chr16	72094011	-	MRPS10	chr6	42176038	+
In-frame	ENST00000303127	ENST00000316788		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
5CDS-intron	ENST00000303127	ENST00000505423		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
In-frame	ENST00000515209	ENST00000316788		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
5CDS-intron	ENST00000515209	ENST00000505423		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
5UTR-3CDS	ENST00000506310	ENST00000316788		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
5UTR-intron	ENST00000506310	ENST00000505423		ChiTaRS3.1			FJ423753	LMAN2	chr5	176778447	-	AP3S1	chr5	115202365	+
5CDS-5UTR	ENST00000219473	ENST00000313732		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
5CDS-5UTR	ENST00000219473	ENST00000564466		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
5CDS-intron	ENST00000219473	ENST00000569488		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
5UTR-5UTR	ENST00000570191	ENST00000313732		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
5UTR-5UTR	ENST00000570191	ENST00000564466		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
5UTR-intron	ENST00000570191	ENST00000569488		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
3UTR-5UTR	ENST00000562743	ENST00000313732		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
3UTR-5UTR	ENST00000562743	ENST00000564466		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
3UTR-intron	ENST00000562743	ENST00000569488		ChiTaRS3.1			FJ423745	USP10	chr16	84733718	+	ZDHHC7	chr16	85024244	-
intron-intron	ENST00000411486	ENST00000409016		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000409851		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000409463		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000074304		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000545415		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000409540		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000523221		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000411486	ENST00000467042		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000409016		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000409851		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000409463		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000074304		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000545415		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000409540		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000523221		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000441687	ENST00000467042		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000409016		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000409851		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000409463		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000074304		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000545415		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000409540		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000523221		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000432087	ENST00000467042		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000409016		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000409851		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000409463		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000074304		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000545415		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000409540		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000523221		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
intron-intron	ENST00000434039	ENST00000467042		ChiTaRS3.1			FJ423742	HJURP	chr2	234746300	+	INPP4A	chr2	99193606	-
In-frame	ENST00000536774	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000536774	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000536774	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000536774	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000536774	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000536774	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000536774	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000536774	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000327441	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000327441	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000327441	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000327441	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000327441	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000327441	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000327441	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000327441	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000539062	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000539062	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000539062	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000539062	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000539062	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000539062	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000539062	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000539062	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000556451	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000556451	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000556451	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000556451	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000556451	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000556451	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000556451	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000556451	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000396294	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000396294	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000396294	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000396294	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000396294	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000396294	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000396294	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000396294	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000545536	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000545536	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000545536	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000545536	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000545536	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000545536	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000545536	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000545536	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000537471	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000537471	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000537471	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000537471	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
In-frame	ENST00000537471	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000537471	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000537471	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
5CDS-intron	ENST00000537471	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000399322		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000258767		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000403951		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000402815		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000407950		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-3CDS	ENST00000539174	ENST00000444700		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-intron	ENST00000539174	ENST00000406247		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
intron-intron	ENST00000539174	ENST00000403963		ChiTaRS3.1			FJ423747	MIPOL1	chr14	37969343	+	DGKB	chr7	14188863	-
Frame-shit	ENST00000373670	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000373670	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000373670	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000373670	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000373670	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000373670	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-5UTR	ENST00000373670	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000373670	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000373670	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000373670	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000373670	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000357244	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-5UTR	ENST00000357244	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000357244	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000357244	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000357244	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000357244	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000423239	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-5UTR	ENST00000423239	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000423239	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000423239	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000423239	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
5CDS-intron	ENST00000423239	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000373665	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-5UTR	ENST00000373665	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000373665	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000373665	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000373665	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000373665	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000335387	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-5UTR	ENST00000335387	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000335387	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000335387	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000335387	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000335387	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000478216	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-5UTR	ENST00000478216	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000478216	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000478216	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000478216	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000478216	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000374140		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000350696		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000317613		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000343817		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000394646		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-3CDS	ENST00000471874	ENST00000374136		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-5UTR	ENST00000471874	ENST00000462143		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000471874	ENST00000463806		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000471874	ENST00000342620		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000471874	ENST00000374134		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
intron-intron	ENST00000471874	ENST00000462403		ChiTaRS3.1			FJ423754	RC3H2	chr9	125627628	-	RGS3	chr9	116299076	+
Frame-shit	ENST00000263280	ENST00000215567		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263280	ENST00000596073		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263280	ENST00000600083		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000263280	ENST00000436007		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000263280	ENST00000596164		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
Frame-shit	ENST00000391910	ENST00000215567		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000391910	ENST00000596073		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000391910	ENST00000600083		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000391910	ENST00000436007		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000391910	ENST00000596164		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
Frame-shit	ENST00000539396	ENST00000215567		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000539396	ENST00000596073		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000539396	ENST00000600083		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-5UTR	ENST00000539396	ENST00000436007		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5CDS-3UTR	ENST00000539396	ENST00000596164		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5UTR-3CDS	ENST00000594357	ENST00000215567		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594357	ENST00000596073		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594357	ENST00000600083		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5UTR-5UTR	ENST00000594357	ENST00000436007		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
5UTR-3UTR	ENST00000594357	ENST00000596164		ChiTaRS3.1			FJ423752	STRN4	chr19	47230707	-	TECR	chr19	14673337	+
intron-intron	ENST00000357154	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357154	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000357545	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000504953	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511531	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000506886	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000507137	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000510741	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000502330	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541354	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512681	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000511269	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000535728	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000421836	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000534949	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000541637	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000357154		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000357545		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000504953		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000511531		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000506886		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000507137		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000510741		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000502330		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000541354		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000512681		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000511269		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000535728		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000421836		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000534949		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000541637		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
intron-intron	ENST00000512648	ENST00000512648		ChiTaRS3.1			AI683420	SPOCK3	chr4	167728450	-	SPOCK3	chrMT	16534	-
5CDS-intron	ENST00000596304	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596304	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596304	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596304	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596304	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000430157	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000430157	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000430157	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000430157	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000430157	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596273	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596273	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596273	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596273	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000596273	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000442744	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000442744	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000442744	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000442744	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000442744	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595683	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595683	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595683	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595683	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595683	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595158	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595158	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595158	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595158	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000595158	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000598780	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000598780	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000598780	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000598780	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000598780	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599551	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599551	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599551	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599551	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599551	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000597451	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000597451	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000597451	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000597451	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000597451	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599595	ENST00000536769		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599595	ENST00000538617		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599595	ENST00000546120		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599595	ENST00000339647		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
5CDS-intron	ENST00000599595	ENST00000536661		ChiTaRS3.1			AA304512	UBA52	chr19	18684558	+	UBC	chr17	21731098	+
intron-3UTR	ENST00000303052	ENST00000527697		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303052	ENST00000278829		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303052	ENST00000540820		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303052	ENST00000525588		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303052	ENST00000529525		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-3UTR	ENST00000607537	ENST00000527697		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000607537	ENST00000278829		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000607537	ENST00000540820		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000607537	ENST00000525588		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000607537	ENST00000529525		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-3UTR	ENST00000303032	ENST00000527697		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303032	ENST00000278829		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303032	ENST00000540820		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303032	ENST00000525588		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000303032	ENST00000529525		ChiTaRS3.1			AA642379	CSNK1G1	chr15	64511076	+	FADS3	chr11	61640998	+
intron-intron	ENST00000510861	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000510861	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000514090	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000381620	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000356504	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000540012	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507069	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000515082	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000507460	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000510861		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000514090		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000381620		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000356504		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000540012		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000507069		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000515082		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000507460		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-intron	ENST00000509716	ENST00000509716		ChiTaRS3.1			AI740568	GABRA2	chr4	46301716	+	GABRA2	chrMT	16479	-
intron-3UTR	ENST00000509479	ENST00000527697		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000509479	ENST00000278829		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000509479	ENST00000540820		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000509479	ENST00000525588		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000509479	ENST00000529525		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-3UTR	ENST00000327122	ENST00000527697		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000327122	ENST00000278829		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000327122	ENST00000540820		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000327122	ENST00000525588		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000327122	ENST00000529525		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-3UTR	ENST00000398940	ENST00000527697		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000398940	ENST00000278829		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000398940	ENST00000540820		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000398940	ENST00000525588		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000398940	ENST00000529525		ChiTaRS3.1			AA262103	MAML3	chr4	140954031	-	FADS3	chr11	61640998	+
intron-intron	ENST00000338368	ENST00000529639		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000531743		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000525297		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000527548		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000279259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000529259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000338368	ENST00000434372		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000529639		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000531743		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000525297		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000527548		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000279259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000529259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000314191	ENST00000434372		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000529639		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000531743		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000525297		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000527548		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000279259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000529259		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-intron	ENST00000523565	ENST00000434372		ChiTaRS3.1			AA469444	PRKDC	chr8	48792421	+	FAU	chr11	64888102	+
intron-5UTR	ENST00000261407	ENST00000380898		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-5UTR	ENST00000261407	ENST00000447459		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-5UTR	ENST00000261407	ENST00000395724		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-intron	ENST00000261407	ENST00000380897		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-intron	ENST00000261407	ENST00000569166		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-5UTR	ENST00000535021	ENST00000380898		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-5UTR	ENST00000535021	ENST00000447459		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-5UTR	ENST00000535021	ENST00000395724		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-intron	ENST00000535021	ENST00000380897		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-intron	ENST00000535021	ENST00000569166		ChiTaRS3.1			AI870471	LPCAT3	chr12	7126194	+	GSG1L	chr16	28074746	+
intron-intron	ENST00000283243	ENST00000283243		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000283243	ENST00000392771		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000283243	ENST00000460710		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000392771	ENST00000283243		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000392771	ENST00000392771		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000392771	ENST00000460710		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000460710	ENST00000283243		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000460710	ENST00000392771		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000460710	ENST00000460710		ChiTaRS3.1			AI186450	PLA2R1	chr2	160882091	-	PLA2R1	chrMT	16529	-
intron-intron	ENST00000596304	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000596304	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000430157	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000430157	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000596273	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000596273	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
3UTR-intron	ENST00000442744	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
3UTR-intron	ENST00000442744	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000595683	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000595683	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000595158	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000595158	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000598780	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000598780	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000599551	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000599551	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000597451	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000597451	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000599595	ENST00000254480		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
intron-intron	ENST00000599595	ENST00000425518		ChiTaRS3.1			CD579874	UBA52	chr19	18686051	+	SMARCC1	chr3	47737252	+
5CDS-intron	ENST00000596304	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000596304	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000596304	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000430157	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000430157	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000430157	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000596273	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000596273	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000596273	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000442744	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000442744	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000442744	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595683	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595683	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595683	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595158	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595158	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000595158	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000598780	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000598780	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000598780	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599551	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599551	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599551	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000597451	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000597451	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000597451	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599595	ENST00000273960		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599595	ENST00000380265		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
5CDS-intron	ENST00000599595	ENST00000264346		ChiTaRS3.1			N83523	UBA52	chr19	18684558	+	HERC6	chr4	89569931	-
intron-intron	ENST00000524381	ENST00000448276		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000524381	ENST00000323347		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000524381	ENST00000225742		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000529038	ENST00000448276		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000529038	ENST00000323347		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000529038	ENST00000225742		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000331898	ENST00000448276		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000331898	ENST00000323347		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000331898	ENST00000225742		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000374778	ENST00000448276		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000374778	ENST00000323347		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000374778	ENST00000225742		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000541867	ENST00000448276		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000541867	ENST00000323347		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000541867	ENST00000225742		ChiTaRS3.1			AI471650	OPCML	chr11	132777519	-	SMARCD2	chr17	61909445	+
intron-intron	ENST00000596304	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000596304	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000596304	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000430157	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000430157	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000430157	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
5CDS-intron	ENST00000596273	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
5CDS-intron	ENST00000596273	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
5CDS-intron	ENST00000596273	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000442744	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000442744	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000442744	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595683	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595683	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595683	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595158	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595158	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000595158	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000598780	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000598780	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000598780	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000599551	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000599551	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000599551	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000597451	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000597451	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
3UTR-intron	ENST00000597451	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000599595	ENST00000327532		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000599595	ENST00000488595		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-intron	ENST00000599595	ENST00000469243		ChiTaRS3.1			AA329258	UBA52	chr19	18686037	+	DZIP1L	chr3	137795142	-
intron-3CDS	ENST00000543264	ENST00000382290		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000543264	ENST00000382432		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000543264	ENST00000382314		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000543264	ENST00000449750		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000543264	ENST00000415508		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000543264	ENST00000440066		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000543264	ENST00000400494		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000599689	ENST00000382290		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000599689	ENST00000382432		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000599689	ENST00000382314		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000599689	ENST00000449750		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000599689	ENST00000415508		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000599689	ENST00000440066		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000599689	ENST00000400494		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000600475	ENST00000382290		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000600475	ENST00000382432		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-3CDS	ENST00000600475	ENST00000382314		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000600475	ENST00000449750		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000600475	ENST00000415508		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000600475	ENST00000440066		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
intron-intron	ENST00000600475	ENST00000400494		ChiTaRS3.1			AA757954	SHD	chr19	4280407	+	DAZ4	chrY	26997748	-
5CDS-intron	ENST00000402285	ENST00000348165		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
5CDS-intron	ENST00000402285	ENST00000389103		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
5CDS-intron	ENST00000272317	ENST00000348165		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
5CDS-intron	ENST00000272317	ENST00000389103		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
5CDS-intron	ENST00000404735	ENST00000348165		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
5CDS-intron	ENST00000404735	ENST00000389103		ChiTaRS3.1			BM312306	RPS27A	chr2	55462574	-	UBE3C	chr7	156985035	+
intron-intron	ENST00000370982	ENST00000529639		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000531743		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000525297		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000527548		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000279259		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000529259		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000370982	ENST00000434372		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000529639		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000531743		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000525297		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000527548		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000279259		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000529259		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000494936	ENST00000434372		ChiTaRS3.1			AA467956	GNG12	chr1	68659108	-	FAU	chr11	64888102	+
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AY839733	KMT2A	chr11	118357875	+	MLLT1	chr19	6278587	-
5CDS-intron	ENST00000448276	ENST00000548058		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
5CDS-intron	ENST00000448276	ENST00000261206		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
5CDS-intron	ENST00000448276	ENST00000548324		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000323347	ENST00000548058		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000323347	ENST00000261206		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000323347	ENST00000548324		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000225742	ENST00000548058		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000225742	ENST00000261206		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
intron-intron	ENST00000225742	ENST00000548324		ChiTaRS3.1			AI871518	SMARCD2	chr17	61909444	-	ACSS3	chr12	81612754	+
5CDS-intron	ENST00000596304	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000596304	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000596304	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000430157	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000430157	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000430157	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000596273	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000596273	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000596273	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000442744	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000442744	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000442744	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595683	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595683	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595683	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595158	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595158	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000595158	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000598780	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000598780	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000598780	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599551	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599551	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599551	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000597451	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000597451	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000597451	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599595	ENST00000453363		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599595	ENST00000316193		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
5CDS-intron	ENST00000599595	ENST00000329882		ChiTaRS3.1			AA368309	UBA52	chr19	18684186	+	CSH1	chr17	61972973	+
In-frame	ENST00000596304	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596304	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596304	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596304	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596304	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000430157	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000430157	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000430157	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000430157	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000430157	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000596273	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596273	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596273	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596273	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000596273	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000442744	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000442744	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000442744	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000442744	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000442744	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000595683	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595683	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595683	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595683	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595683	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000595158	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595158	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595158	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595158	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000595158	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000598780	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000598780	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000598780	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000598780	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000598780	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000599551	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599551	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599551	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599551	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599551	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000597451	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000597451	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000597451	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000597451	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000597451	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
In-frame	ENST00000599595	ENST00000536769		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599595	ENST00000538617		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599595	ENST00000546120		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599595	ENST00000339647		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
5CDS-intron	ENST00000599595	ENST00000536661		ChiTaRS3.1			N85706	UBA52	chr19	18684558	+	UBC	chr12	125397462	-
intron-3CDS	ENST00000400301	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000400301	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000308271	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000374732	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000529637	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000479177	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000261749		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000561060		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000559157		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000558494		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000559835		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000559775		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000558688		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-3CDS	ENST00000421625	ENST00000558087		ChiTaRS3.1			T78059	USP48	chr1	22096375	+	ZFAND6	chr15	80415043	+
intron-intron	ENST00000545225	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000545225	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000590720	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000590720	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000541124	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000541124	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000592578	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000592578	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000441946	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000441946	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000293362	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000293362	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000592169	ENST00000299413		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000592169	ENST00000532066		ChiTaRS3.1			AW007317	PSME3	chr17	40992628	-	TRIM44	chr11	35815651	+
intron-intron	ENST00000418539	ENST00000418539		ChiTaRS3.1			AA484807	BCYRN1	chrX	70445034	+	BCYRN1	chrX	70444827	-
Frame-shit	ENST00000303562	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
In-frame	ENST00000303562	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000303562	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000303562	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000303562	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000303562	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000303562	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000554617	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000554617	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000554617	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000554617	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000554617	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000554617	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000554617	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000556324	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000556324	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000556324	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000556324	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000556324	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000556324	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000556324	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
Frame-shit	ENST00000535987	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
In-frame	ENST00000535987	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000535987	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000535987	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000535987	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000535987	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000535987	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000555242	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3CDS	ENST00000555242	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000555242	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000555242	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-3UTR	ENST00000555242	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000555242	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000555242	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
Frame-shit	ENST00000555686	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
In-frame	ENST00000555686	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555686	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555686	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555686	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000555686	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000555686	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
In-frame	ENST00000555347	ENST00000303562		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
Frame-shit	ENST00000555347	ENST00000554617		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555347	ENST00000556324		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555347	ENST00000535987		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-3UTR	ENST00000555347	ENST00000555242		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000555347	ENST00000555686		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
5CDS-intron	ENST00000555347	ENST00000555347		ChiTaRS3.1			BF089597	FOS	chr14	75747659	+	FOS	chr14	75745716	+
intron-intron	ENST00000308664	ENST00000374436		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000308664	ENST00000374443		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000308664	ENST00000374450		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000308664	ENST00000462894		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-intron	ENST00000395494	ENST00000374436		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-5UTR	ENST00000395494	ENST00000374443		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-5UTR	ENST00000395494	ENST00000374450		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-intron	ENST00000395494	ENST00000462894		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-intron	ENST00000539276	ENST00000374436		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-5UTR	ENST00000539276	ENST00000374443		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-5UTR	ENST00000539276	ENST00000374450		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
3UTR-intron	ENST00000539276	ENST00000462894		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000550248	ENST00000374436		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000550248	ENST00000374443		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000550248	ENST00000374450		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000550248	ENST00000462894		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000552636	ENST00000374436		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000552636	ENST00000374443		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-5UTR	ENST00000552636	ENST00000374450		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000552636	ENST00000462894		ChiTaRS3.1			BQ679197	ATP2A2	chr12	110784277	-	EIF6	chr20	33872558	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266513	EWSR1	chr22	29684045	+	FLI1	chr11	128678890	+
intron-intron	ENST00000545908	ENST00000545908		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000545908	ENST00000216605		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000545908	ENST00000556284		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000216605	ENST00000545908		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000216605	ENST00000216605		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000216605	ENST00000556284		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000556284	ENST00000545908		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000556284	ENST00000216605		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-intron	ENST00000556284	ENST00000556284		ChiTaRS3.1			W27097	MTHFD1	chr14	64915518	+	MTHFD1	chr14	64915329	-
intron-3UTR	ENST00000471014	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000471014	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-5UTR	ENST00000471014	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000471014	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000471014	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000471014	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000405570	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000405570	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-5UTR	ENST00000405570	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000405570	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000405570	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000405570	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000396183	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000396183	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-5UTR	ENST00000396183	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000396183	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000396183	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000396183	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000349496	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000349496	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-5UTR	ENST00000349496	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000349496	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000349496	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000349496	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000453024	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000453024	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-5UTR	ENST00000453024	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000453024	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000453024	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3UTR	ENST00000453024	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000396185	ENST00000393008		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000396185	ENST00000324787		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-5UTR	ENST00000396185	ENST00000472343		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000396185	ENST00000496958		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000396185	ENST00000469351		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
3UTR-3UTR	ENST00000396185	ENST00000467334		ChiTaRS3.1			BE835337	CTNNB1	chr3	41281235	+	MRPS33	chr7	140706183	-
intron-3CDS	ENST00000384974	ENST00000424459		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000514387		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000506184		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000454432		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000511209		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000264779		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-5UTR	ENST00000384974	ENST00000538707		ChiTaRS3.1			CD104717	MIR639	chr19	14673368	+	GPBP1	chr5	56527108	+
intron-3UTR	ENST00000512055	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000512055	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512055	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512055	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512055	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000512055	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000429747	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000429747	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000429747	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000429747	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000429747	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000429747	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000512332	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000512332	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512332	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512332	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000512332	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000512332	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000511604	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000511604	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000511604	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000511604	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000511604	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000511604	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000502818	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000502818	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000502818	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000502818	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000502818	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000502818	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000503204	ENST00000512055		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000503204	ENST00000429747		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000503204	ENST00000512332		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000503204	ENST00000511604		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-intron	ENST00000503204	ENST00000502818		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-5UTR	ENST00000503204	ENST00000503204		ChiTaRS3.1			AA894897	CPNE4	chr3	131253657	-	CPNE4	chr3	131253593	+
intron-3UTR	ENST00000541285	ENST00000520539		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000541285	ENST00000220959		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000541285	ENST00000518205		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000541285	ENST00000521922		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000541285	ENST00000519528		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-3UTR	ENST00000399138	ENST00000520539		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000399138	ENST00000220959		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000399138	ENST00000518205		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000399138	ENST00000521922		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-intron	ENST00000399138	ENST00000519528		ChiTaRS3.1			BQ186237	ALKBH5	chr17	18101810	+	UBR5	chr8	103265889	-
intron-3CDS	ENST00000356415	ENST00000336735		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000356415	ENST00000555824		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000436150	ENST00000336735		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000436150	ENST00000555824		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000369709	ENST00000336735		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000369709	ENST00000555824		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000545460	ENST00000336735		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000545460	ENST00000555824		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000494982	ENST00000336735		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-3CDS	ENST00000494982	ENST00000555824		ChiTaRS3.1			BF329177	RAP1A	chr1	112203562	-	SEL1L	chr14	81969115	-
intron-intron	ENST00000418539	ENST00000418539		ChiTaRS3.1			W22697	BCYRN1	chrX	70473941	+	BCYRN1	chrX	70470508	-
intron-3CDS	ENST00000442633	ENST00000379441		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000442633	ENST00000179765		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000442633	ENST00000551812		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000442633	ENST00000549884		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-intron	ENST00000442633	ENST00000553222		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000446879	ENST00000379441		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000446879	ENST00000179765		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000446879	ENST00000551812		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000446879	ENST00000549884		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-intron	ENST00000446879	ENST00000553222		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000454715	ENST00000379441		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000454715	ENST00000179765		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000454715	ENST00000551812		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000454715	ENST00000549884		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-intron	ENST00000454715	ENST00000553222		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000273695	ENST00000379441		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000273695	ENST00000179765		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000273695	ENST00000551812		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-3CDS	ENST00000273695	ENST00000549884		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
intron-intron	ENST00000273695	ENST00000553222		ChiTaRS3.1			BF900417	TM4SF19	chr3	196048794	-	BAZ2A	chr12	57011271	-
Frame-shit	ENST00000319006	ENST00000319006		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000319006	ENST00000528097		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
5CDS-intron	ENST00000319006	ENST00000532202		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000528097	ENST00000319006		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
Frame-shit	ENST00000528097	ENST00000528097		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
5CDS-intron	ENST00000528097	ENST00000532202		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-3CDS	ENST00000532202	ENST00000319006		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-3CDS	ENST00000532202	ENST00000528097		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-intron	ENST00000532202	ENST00000532202		ChiTaRS3.1			BQ334187	TALDO1	chr11	755897	-	TALDO1	chr11	763885	+
intron-3CDS	ENST00000597275	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000597275	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000496529	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000496529	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000376396	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000376396	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000422185	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000422185	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000603986	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000603986	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000536628	ENST00000360957		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3CDS	ENST00000536628	ENST00000418234		ChiTaRS3.1			BF915897	CCDC120	chrX	48922399	-	PPP1R13L	chr19	45885921	-
intron-3UTR	ENST00000441037	ENST00000265909		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000534726		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000545537		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000426933		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533318		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000530356		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000539184		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000528555		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533214		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000421325	ENST00000265909		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000534726		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000545537		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000426933		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533318		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000530356		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000539184		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000528555		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533214		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000389298	ENST00000265909		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000534726		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000545537		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000426933		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533318		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000530356		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000539184		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000528555		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533214		ChiTaRS3.1			AW387307	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3CDS	ENST00000334504	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000334504	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000334504	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000334504	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000334504	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000372216	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000372216	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000372216	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000372216	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000372216	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000394872	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000394872	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000394872	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000394872	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000394872	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000538570	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000538570	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000538570	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000538570	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000538570	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000545689	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000545689	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000545689	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000545689	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000545689	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000461897	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000461897	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000461897	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000461897	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000461897	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-3CDS	ENST00000418180	ENST00000354698		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000418180	ENST00000427617		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000418180	ENST00000412564		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000418180	ENST00000440261		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000418180	ENST00000454212		ChiTaRS3.1			BE835987	COL4A6	chrX	107654044	-	ZNF589	chr3	48309898	+
intron-intron	ENST00000442668	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000442668	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000442668	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000442668	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000442668	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000442668	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000358855	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000545558	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000535387	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000542053	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000389722		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000556626		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000389721		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000542895		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000389720		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-intron	ENST00000543985	ENST00000342835		ChiTaRS3.1			R10937	NOL8	chr9	95082235	-	SPTB	chr14	65231312	+
intron-3CDS	ENST00000600714	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000600714	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000600714	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000600714	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000600714	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000600714	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000600714	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000601257	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000601257	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000601257	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000601257	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000601257	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000601257	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000601257	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000301096	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000301096	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000301096	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000301096	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000301096	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000301096	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000301096	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000544146	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000544146	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000544146	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000544146	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000544146	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000544146	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000544146	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000536937	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000536937	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000536937	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000536937	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000536937	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000536937	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000536937	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000597597	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000597597	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000597597	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000597597	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000597597	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000597597	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000597597	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000541777	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000541777	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000541777	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000541777	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000541777	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000541777	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000541777	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000545872	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000545872	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000545872	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000545872	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000545872	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000545872	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000545872	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000594682	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000594682	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000594682	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000594682	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000594682	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000594682	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000594682	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000391789	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000391789	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000391789	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000391789	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000391789	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000391789	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000391789	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000596930	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000596930	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000596930	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000596930	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000596930	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000596930	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000596930	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000597161	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000597161	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000597161	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000597161	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000597161	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000597161	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000597161	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000598536	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000598536	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000598536	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000598536	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000598536	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000598536	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000598536	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000600457	ENST00000292123		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3CDS	ENST00000600457	ENST00000592224		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000600457	ENST00000586934		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-3UTR	ENST00000600457	ENST00000454510		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000600457	ENST00000433404		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-5UTR	ENST00000600457	ENST00000588852		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000600457	ENST00000538656		ChiTaRS3.1			BF081607	ZNF83	chr19	53116212	+	SAFB	chr19	5641655	-
intron-intron	ENST00000548458	ENST00000548458		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000548458	ENST00000549893		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000548458	ENST00000443585		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000548458	ENST00000552457		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000549893	ENST00000548458		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000549893	ENST00000549893		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000549893	ENST00000443585		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000549893	ENST00000552457		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000443585	ENST00000548458		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000443585	ENST00000549893		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000443585	ENST00000443585		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000443585	ENST00000552457		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000552457	ENST00000548458		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000552457	ENST00000549893		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000552457	ENST00000443585		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-intron	ENST00000552457	ENST00000552457		ChiTaRS3.1			BG754287	C12orf75	chr12	105740289	+	C12orf75	chr12	105737630	+
intron-5UTR	ENST00000228945	ENST00000234590		ChiTaRS3.1			BG389117	ARHGDIB	chr12	15114517	+	ENO1	chr1	8938731	-
intron-5UTR	ENST00000541644	ENST00000234590		ChiTaRS3.1			BG389117	ARHGDIB	chr12	15114517	+	ENO1	chr1	8938731	-
intron-5UTR	ENST00000539131	ENST00000234590		ChiTaRS3.1			BG389117	ARHGDIB	chr12	15114517	+	ENO1	chr1	8938731	-
intron-5UTR	ENST00000541546	ENST00000234590		ChiTaRS3.1			BG389117	ARHGDIB	chr12	15114517	+	ENO1	chr1	8938731	-
intron-3CDS	ENST00000300134	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000300134	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000300134	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000300134	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000300134	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000300134	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000538913	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000543873	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000556155	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000537215	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000300134		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000538913		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000543873		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000556155		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000537215		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000454075	ENST00000454075		ChiTaRS3.1			BI024527	STAT6	chr12	57493183	-	STAT6	chr12	57493838	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911247	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911247	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911247	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911247	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
5CDS-intron	ENST00000281394	ENST00000455502		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000281394	ENST00000248572		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000281394	ENST00000429473		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000281394	ENST00000430875		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000281394	ENST00000428834		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000294952	ENST00000455502		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000294952	ENST00000248572		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000294952	ENST00000429473		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000294952	ENST00000430875		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000294952	ENST00000428834		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000449090	ENST00000455502		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000449090	ENST00000248572		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000449090	ENST00000429473		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000449090	ENST00000430875		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
5CDS-intron	ENST00000449090	ENST00000428834		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
3UTR-intron	ENST00000476199	ENST00000455502		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
3UTR-intron	ENST00000476199	ENST00000248572		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
3UTR-intron	ENST00000476199	ENST00000429473		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
3UTR-intron	ENST00000476199	ENST00000430875		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
3UTR-intron	ENST00000476199	ENST00000428834		ChiTaRS3.1			BI050757	PPP1R21	chr2	48734469	+	GNGT1	chr7	93518478	+
intron-3UTR	ENST00000546323	ENST00000402508		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3UTR	ENST00000546323	ENST00000403359		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3UTR	ENST00000546323	ENST00000316377		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000546323	ENST00000480038		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000546323	ENST00000378314		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000546323	ENST00000405808		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000546323	ENST00000434523		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3UTR	ENST00000536503	ENST00000402508		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3UTR	ENST00000536503	ENST00000403359		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3UTR	ENST00000536503	ENST00000316377		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000536503	ENST00000480038		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000536503	ENST00000378314		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000536503	ENST00000405808		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-intron	ENST00000536503	ENST00000434523		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-3UTR	ENST00000282892	ENST00000402508		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-3UTR	ENST00000282892	ENST00000403359		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-3UTR	ENST00000282892	ENST00000316377		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-intron	ENST00000282892	ENST00000480038		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-intron	ENST00000282892	ENST00000378314		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-intron	ENST00000282892	ENST00000405808		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
3UTR-intron	ENST00000282892	ENST00000434523		ChiTaRS3.1			AI435007	MED21	chr12	27182513	-	FBXO11	chr2	48034451	+
intron-3CDS	ENST00000503278	ENST00000339859		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000503278	ENST00000408019		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000503278	ENST00000428547		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000503278	ENST00000394811		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000503278	ENST00000497106		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000503278	ENST00000422491		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-intron	ENST00000503278	ENST00000319786		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000425103	ENST00000339859		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000425103	ENST00000408019		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000425103	ENST00000428547		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000425103	ENST00000394811		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000425103	ENST00000497106		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000425103	ENST00000422491		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-intron	ENST00000425103	ENST00000319786		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000307659	ENST00000339859		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000307659	ENST00000408019		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-3CDS	ENST00000307659	ENST00000428547		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000307659	ENST00000394811		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000307659	ENST00000497106		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-5UTR	ENST00000307659	ENST00000422491		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-intron	ENST00000307659	ENST00000319786		ChiTaRS3.1			BQ376517	KIAA0232	chr4	6812809	+	USP54	chr10	75277475	-
intron-intron	ENST00000372899	ENST00000264674		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000392736		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000464456		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000472280		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000494292		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000468789		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000460814		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000433243		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372899	ENST00000485957		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000264674		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000392736		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000464456		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000472280		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000494292		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000468789		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000460814		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000433243		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372901	ENST00000485957		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000264674		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000392736		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000464456		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000472280		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000494292		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000468789		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000460814		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000433243		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372883	ENST00000485957		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000264674		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000392736		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000464456		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000472280		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000494292		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000468789		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000460814		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000433243		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-intron	ENST00000372903	ENST00000485957		ChiTaRS3.1			DB359907	UBR2	chr6	42577387	+	MECOM	chr3	169318081	+
intron-3UTR	ENST00000381086	ENST00000403729		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-5UTR	ENST00000381086	ENST00000482406		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000381086	ENST00000404191		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381086	ENST00000346652		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381086	ENST00000307333		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381086	ENST00000295465		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000275521	ENST00000403729		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-5UTR	ENST00000275521	ENST00000482406		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000275521	ENST00000404191		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000275521	ENST00000346652		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000275521	ENST00000307333		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000275521	ENST00000295465		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000381083	ENST00000403729		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-5UTR	ENST00000381083	ENST00000482406		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000381083	ENST00000404191		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381083	ENST00000346652		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381083	ENST00000307333		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000381083	ENST00000295465		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000465642	ENST00000403729		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-5UTR	ENST00000465642	ENST00000482406		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-3UTR	ENST00000465642	ENST00000404191		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000465642	ENST00000346652		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000465642	ENST00000307333		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
intron-intron	ENST00000465642	ENST00000295465		ChiTaRS3.1			DB318377	IGFBP3	chr7	45952180	+	ANTXR2	chr4	80828557	+
3UTR-3CDS	ENST00000326765	ENST00000316292		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000326765	ENST00000491404		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000326765	ENST00000309268		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000326765	ENST00000331523		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-3CDS	ENST00000356591	ENST00000316292		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000356591	ENST00000491404		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000356591	ENST00000309268		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
3UTR-intron	ENST00000356591	ENST00000331523		ChiTaRS3.1			AK057867	APOLD1	chr12	12941344	+	EEF1A1	chr6	74227548	-
intron-intron	ENST00000455485	ENST00000455485		ChiTaRS3.1			BC047947	GUSBP11	chr22	24040153	-	GUSBP11	chr22	24038688	+
intron-3CDS	ENST00000315249	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000315249	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000315249	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000315249	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000315249	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000315249	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000580569	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000580569	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000580569	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000580569	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000580569	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000580569	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000268850	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000268850	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000268850	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000268850	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000268850	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000268850	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000378516	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000378516	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000378516	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000378516	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000378516	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000378516	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000584655	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000584655	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000584655	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000584655	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000584655	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000584655	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000394597	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000394597	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000394597	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000394597	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000394597	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000394597	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000447669	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000447669	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000447669	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000447669	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000447669	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000447669	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000415395	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000415395	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000415395	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000415395	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000415395	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000415395	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000413582	ENST00000360319		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000413582	ENST00000422373		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000413582	ENST00000369850		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000413582	ENST00000369856		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-3CDS	ENST00000413582	ENST00000344736		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-5UTR	ENST00000413582	ENST00000498491		ChiTaRS3.1			T12127	RFFL	chr17	33337080	-	FLNA	chrX	153577863	+
intron-intron	ENST00000282470	ENST00000446778		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000282470	ENST00000322090		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000282470	ENST00000487370		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000418378	ENST00000446778		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000418378	ENST00000322090		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000418378	ENST00000487370		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000503414	ENST00000446778		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000503414	ENST00000322090		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-intron	ENST00000503414	ENST00000487370		ChiTaRS3.1			DA235147	SPARCL1	chr4	88415716	-	GBAS	chr7	56047621	+
intron-3UTR	ENST00000378609	ENST00000398576		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-3UTR	ENST00000378609	ENST00000323076		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-intron	ENST00000378609	ENST00000435666		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-intron	ENST00000378609	ENST00000460190		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-3UTR	ENST00000472614	ENST00000398576		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-3UTR	ENST00000472614	ENST00000323076		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-intron	ENST00000472614	ENST00000435666		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-intron	ENST00000472614	ENST00000460190		ChiTaRS3.1			BI026317	GNB1	chr1	1809004	-	LCP1	chr13	46700163	+
intron-intron	ENST00000509176	ENST00000282516		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000509176	ENST00000448238		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000509176	ENST00000504430		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000333691	ENST00000282516		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000333691	ENST00000448238		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000333691	ENST00000504430		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000432775	ENST00000282516		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000432775	ENST00000448238		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000432775	ENST00000504430		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000504150	ENST00000282516		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000504150	ENST00000448238		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
intron-intron	ENST00000504150	ENST00000504430		ChiTaRS3.1			AW369457	CCSER1	chr4	91850207	+	NIPBL	chr5	37037966	+
3UTR-intron	ENST00000417225	ENST00000417225		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
3UTR-3UTR	ENST00000417225	ENST00000443527		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
3UTR-intron	ENST00000417225	ENST00000473199		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
3UTR-intron	ENST00000443527	ENST00000417225		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
3UTR-3UTR	ENST00000443527	ENST00000443527		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
3UTR-intron	ENST00000443527	ENST00000473199		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
intron-intron	ENST00000473199	ENST00000417225		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
intron-3UTR	ENST00000473199	ENST00000443527		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
intron-intron	ENST00000473199	ENST00000473199		ChiTaRS3.1			W26687	CRY2	chr11	45902637	-	CRY2	chr11	45903117	+
intron-intron	ENST00000524717	ENST00000544305		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-intron	ENST00000524717	ENST00000374630		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-intron	ENST00000524717	ENST00000400191		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-intron	ENST00000524717	ENST00000374632		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-intron	ENST00000524717	ENST00000374627		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-intron	ENST00000524717	ENST00000465676		ChiTaRS3.1			BF929677	MAML2	chr11	95756315	-	EPHB2	chr1	23235514	+
intron-3UTR	ENST00000469796	ENST00000469796		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000469796	ENST00000340800		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000469796	ENST00000348502		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-intron	ENST00000469796	ENST00000504383		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000340800	ENST00000469796		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000340800	ENST00000340800		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000340800	ENST00000348502		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-intron	ENST00000340800	ENST00000504383		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000348502	ENST00000469796		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000348502	ENST00000340800		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000348502	ENST00000348502		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-intron	ENST00000348502	ENST00000504383		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000504383	ENST00000469796		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000504383	ENST00000340800		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-3UTR	ENST00000504383	ENST00000348502		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-intron	ENST00000504383	ENST00000504383		ChiTaRS3.1			BG924677	ACSL4	chrX	108885542	+	ACSL4	chrX	108885481	-
intron-intron	ENST00000264899	ENST00000337338		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-intron	ENST00000264899	ENST00000394593		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-intron	ENST00000325942	ENST00000337338		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-intron	ENST00000325942	ENST00000394593		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-intron	ENST00000264895	ENST00000337338		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-intron	ENST00000264895	ENST00000394593		ChiTaRS3.1			T05837	FRAS1	chr4	79245469	+	LRRC8D	chr1	90324171	-
intron-3CDS	ENST00000529639	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000531743	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000525297	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000527548	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000279259	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000529259	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
intron-3CDS	ENST00000434372	ENST00000316448		ChiTaRS3.1			BG491927	FAU	chr11	64888260	+	CALR	chr19	13054606	-
3UTR-intron	ENST00000253039	ENST00000390168		ChiTaRS3.1			BG774247	EIF2S3	chrX	24095884	-	H19	chr11	2019057	-
intron-intron	ENST00000460032	ENST00000390168		ChiTaRS3.1			BG774247	EIF2S3	chrX	24095884	-	H19	chr11	2019057	-
intron-intron	ENST00000517956	ENST00000441339		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000308946		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000535407		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000517956	ENST00000541137		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000441339		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000308946		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000535407		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000443022	ENST00000541137		ChiTaRS3.1			BF828657	FBXO32	chr8	124515477	-	MYEOV	chr11	69155834	+
intron-intron	ENST00000263955	ENST00000466368		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000263955	ENST00000485713		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000263955	ENST00000413384		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000263955	ENST00000310317		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000263955	ENST00000392826		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000263955	ENST00000461735		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000466368		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000485713		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000413384		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000310317		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000392826		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-intron	ENST00000409228	ENST00000461735		ChiTaRS3.1			AA368687	STK17B	chr2	197035141	-	SLC4A2	chr7	150768587	-
intron-3CDS	ENST00000375835	ENST00000331817		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-intron	ENST00000375835	ENST00000552322		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-3CDS	ENST00000375830	ENST00000331817		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-intron	ENST00000375830	ENST00000552322		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-3CDS	ENST00000375831	ENST00000331817		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-intron	ENST00000375831	ENST00000552322		ChiTaRS3.1			BQ322767	SHC3	chr9	91675033	+	KRT7	chr12	52629123	+
intron-intron	ENST00000403829	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000403829	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298687	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000350792	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397858	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554104	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000555158	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000553503	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397853	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000360463	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000556147	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397856	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397855	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554143	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397851	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397847	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000298684	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000397844	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000543086		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000546231		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000397203		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000360905		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000589028		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000355446		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
intron-intron	ENST00000554277	ENST00000536573		ChiTaRS3.1			AW590587	NDRG2	chr14	21485127	+	ERC1	chr12	1526459	-
5CDS-intron	ENST00000452733	ENST00000546088		ChiTaRS3.1			DA568557	CYTH2	chr19	48981357	+	TAF1D	chr11	93464316	-
5CDS-intron	ENST00000452733	ENST00000448108		ChiTaRS3.1			DA568557	CYTH2	chr19	48981357	+	TAF1D	chr11	93464316	-
5CDS-intron	ENST00000427476	ENST00000546088		ChiTaRS3.1			DA568557	CYTH2	chr19	48981357	+	TAF1D	chr11	93464316	-
5CDS-intron	ENST00000427476	ENST00000448108		ChiTaRS3.1			DA568557	CYTH2	chr19	48981357	+	TAF1D	chr11	93464316	-
intron-3CDS	ENST00000254636	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000254636	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000449247	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000410111	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000442664	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000409051	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000254636		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000449247		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000410111		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000442664		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000409051		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000490238	ENST00000490238		ChiTaRS3.1			BU685307	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3UTR	ENST00000370206	ENST00000370206		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000370206	ENST00000538964		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000370206	ENST00000394202		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000370206	ENST00000545882		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000370206	ENST00000487539		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000538964	ENST00000370206		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000538964	ENST00000538964		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000538964	ENST00000394202		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000538964	ENST00000545882		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000538964	ENST00000487539		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000394202	ENST00000370206		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000394202	ENST00000538964		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000394202	ENST00000394202		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000394202	ENST00000545882		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000394202	ENST00000487539		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000545882	ENST00000370206		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000545882	ENST00000538964		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000545882	ENST00000394202		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000545882	ENST00000545882		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000545882	ENST00000487539		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000487539	ENST00000370206		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3UTR	ENST00000487539	ENST00000538964		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000487539	ENST00000394202		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000487539	ENST00000545882		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-intron	ENST00000487539	ENST00000487539		ChiTaRS3.1			BF340377	CNN3	chr1	95362836	+	CNN3	chr1	95362794	-
intron-3CDS	ENST00000485803	ENST00000367990		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-intron	ENST00000485803	ENST00000468465		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000485803	ENST00000463812		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000485803	ENST00000470459		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000485803	ENST00000464492		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-intron	ENST00000485803	ENST00000491350		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-3CDS	ENST00000373016	ENST00000367990		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-intron	ENST00000373016	ENST00000468465		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000373016	ENST00000463812		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000373016	ENST00000470459		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-5UTR	ENST00000373016	ENST00000464492		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-intron	ENST00000373016	ENST00000491350		ChiTaRS3.1			AI336287	FHL3	chr1	38462846	+	APOA2	chr1	161192815	-
intron-intron	ENST00000314045	ENST00000314045		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000314045	ENST00000306014		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000314045	ENST00000549271		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000306014	ENST00000314045		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000306014	ENST00000306014		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000306014	ENST00000549271		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000549271	ENST00000314045		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000549271	ENST00000306014		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-intron	ENST00000549271	ENST00000549271		ChiTaRS3.1			CO393727	DDX54	chr12	113623179	+	DDX54	chr12	113612845	+
intron-3UTR	ENST00000509702	ENST00000336868		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000509702	ENST00000577098		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-3UTR	ENST00000509702	ENST00000575801		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000509702	ENST00000538650		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000509702	ENST00000537628		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-3UTR	ENST00000264867	ENST00000336868		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000264867	ENST00000577098		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-3UTR	ENST00000264867	ENST00000575801		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000264867	ENST00000538650		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000264867	ENST00000537628		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-3UTR	ENST00000507380	ENST00000336868		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000507380	ENST00000577098		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-3UTR	ENST00000507380	ENST00000575801		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000507380	ENST00000538650		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000507380	ENST00000537628		ChiTaRS3.1			AA047637	PPARGC1A	chr4	23865710	-	NXN	chr17	703105	-
intron-intron	ENST00000350026	ENST00000350026		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000346085		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000367148		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000275248		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000350026	ENST00000478761		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000350026		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000346085		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000367148		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000275248		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000346085	ENST00000478761		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000350026		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000346085		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000367148		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000275248		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000367148	ENST00000478761		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000350026		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000346085		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000367148		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000275248		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000275248	ENST00000478761		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000350026		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000346085		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000367148		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000275248		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
intron-intron	ENST00000478761	ENST00000478761		ChiTaRS3.1			BI000767	ARID1B	chr6	157431604	-	ARID1B	chr6	157454344	-
3UTR-intron	ENST00000504986	ENST00000370706		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000504986	ENST00000357489		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000504986	ENST00000491832		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-3UTR	ENST00000504986	ENST00000370708		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000504986	ENST00000370702		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000504986	ENST00000370710		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000504986	ENST00000510989		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000370706		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000357489		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000491832		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-3UTR	ENST00000513702	ENST00000370708		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000370702		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000370710		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-intron	ENST00000513702	ENST00000510989		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000370706		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000357489		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000491832		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-3UTR	ENST00000325094	ENST00000370708		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000370702		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000370710		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
3UTR-intron	ENST00000325094	ENST00000510989		ChiTaRS3.1			AW993517	TMEM33	chr4	41961849	-	ZNF451	chr6	56971722	+
intron-3CDS	ENST00000474320	ENST00000373960		ChiTaRS3.1			AK022087	DNAJC15	chr13	43648799	+	DES	chr2	220284858	+
intron-3CDS	ENST00000379221	ENST00000373960		ChiTaRS3.1			AK022087	DNAJC15	chr13	43648799	+	DES	chr2	220284858	+
intron-5UTR	ENST00000361658	ENST00000380406		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000361658	ENST00000380405		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000361658	ENST00000320027		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000361658	ENST00000445273		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000361658	ENST00000429785		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000395544	ENST00000380406		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000395544	ENST00000380405		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000395544	ENST00000320027		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000395544	ENST00000445273		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000395544	ENST00000429785		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000580130	ENST00000380406		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000580130	ENST00000380405		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-5UTR	ENST00000580130	ENST00000320027		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000580130	ENST00000445273		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
intron-intron	ENST00000580130	ENST00000429785		ChiTaRS3.1			DB170097	ULK2	chr17	19744382	-	HSPH1	chr13	31736041	-
5CDS-intron	ENST00000282041	ENST00000306376		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5CDS-intron	ENST00000282041	ENST00000434744		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5CDS-intron	ENST00000282041	ENST00000537818		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5CDS-intron	ENST00000282041	ENST00000480706		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5UTR-intron	ENST00000585906	ENST00000306376		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5UTR-intron	ENST00000585906	ENST00000434744		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5UTR-intron	ENST00000585906	ENST00000537818		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
5UTR-intron	ENST00000585906	ENST00000480706		ChiTaRS3.1			BI046967	EPG5	chr18	43467720	-	ETV5	chr3	185882756	-
intron-3CDS	ENST00000254636	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000254636	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000254636	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000254636	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000254636	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000254636	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000449247	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000449247	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000449247	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000449247	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000449247	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000449247	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000410111	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000410111	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000410111	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000410111	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000410111	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000410111	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000442664	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000442664	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000442664	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000442664	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000442664	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000442664	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000409051	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000409051	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000409051	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000409051	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000409051	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000409051	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000490238	ENST00000254636		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000490238	ENST00000449247		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000490238	ENST00000410111		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000490238	ENST00000442664		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-3CDS	ENST00000490238	ENST00000409051		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000490238	ENST00000490238		ChiTaRS3.1			BE159547	IMMT	chr2	86406595	-	IMMT	chr2	86400834	+
intron-intron	ENST00000306833	ENST00000223368		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000306833	ENST00000411832		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000306833	ENST00000482231		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000223368		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000411832		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000482231		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000223368		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000411832		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000482231		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000223368		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000411832		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000482231		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000223368		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000411832		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000482231		ChiTaRS3.1			AK123497	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000272321	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000272321	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000272321	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000272321	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000272321	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000272321	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409199	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409120	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000398544	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409562	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000238855		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000422803		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000238856		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000409933		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000409183		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000409835	ENST00000487769		ChiTaRS3.1			AA281427	WDPCP	chr2	63383853	-	AFTPH	chr2	64803916	-
intron-intron	ENST00000300880	ENST00000300880		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000300880	ENST00000449228		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000300880	ENST00000341983		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000300880	ENST00000439096		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000449228	ENST00000300880		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000449228	ENST00000449228		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000449228	ENST00000341983		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000449228	ENST00000439096		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000341983	ENST00000300880		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000341983	ENST00000449228		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000341983	ENST00000341983		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000341983	ENST00000439096		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000439096	ENST00000300880		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000439096	ENST00000449228		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000439096	ENST00000341983		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000439096	ENST00000439096		ChiTaRS3.1			BI062677	BBC3	chr19	47735414	+	BBC3	chr19	47732819	-
intron-intron	ENST00000391918	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000391918	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000391918	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000391918	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000291295	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000291295	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000291295	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000291295	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000597743	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000597743	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000597743	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000597743	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000477244	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000477244	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000477244	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000477244	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000598871	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000598871	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000598871	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000598871	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000594523	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000594523	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000594523	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000594523	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000599839	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000599839	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000599839	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000599839	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000596362	ENST00000225792		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000596362	ENST00000450599		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000596362	ENST00000578804		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
3UTR-intron	ENST00000596362	ENST00000580026		ChiTaRS3.1			BF802907	CALM3	chr19	47112775	-	DDX5	chr17	62496951	+
intron-intron	ENST00000434748	ENST00000588161		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000262633		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000592202		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000586618		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000589559		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000360475		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000434748	ENST00000589871		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000588161		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000262633		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000592202		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000586618		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000589559		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000360475		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
intron-intron	ENST00000261673	ENST00000589871		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000588161		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000262633		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000592202		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000586618		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000589559		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000360475		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
3UTR-intron	ENST00000542061	ENST00000589871		ChiTaRS3.1			AW665507	FBRSL1	chr12	133088462	-	RBM42	chr19	36121757	+
In-frame	ENST00000372676	ENST00000372676		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
In-frame	ENST00000372676	ENST00000217425		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000372676	ENST00000339946		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000372676	ENST00000488143		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000372676	ENST00000342873		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
In-frame	ENST00000217425	ENST00000372676		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
In-frame	ENST00000217425	ENST00000217425		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000217425	ENST00000339946		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000217425	ENST00000488143		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000217425	ENST00000342873		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
In-frame	ENST00000339946	ENST00000372676		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
In-frame	ENST00000339946	ENST00000217425		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000339946	ENST00000339946		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000339946	ENST00000488143		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
5CDS-intron	ENST00000339946	ENST00000342873		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-3CDS	ENST00000488143	ENST00000372676		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-3CDS	ENST00000488143	ENST00000217425		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000488143	ENST00000339946		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000488143	ENST00000488143		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000488143	ENST00000342873		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-3CDS	ENST00000342873	ENST00000372676		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-3CDS	ENST00000342873	ENST00000217425		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000342873	ENST00000339946		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000342873	ENST00000488143		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-intron	ENST00000342873	ENST00000342873		ChiTaRS3.1			BE816517	WFDC2	chr20	44098428	-	WFDC2	chr20	44099117	+
intron-3UTR	ENST00000360652	ENST00000394945		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-intron	ENST00000360652	ENST00000282223		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-intron	ENST00000360652	ENST00000509978		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-3UTR	ENST00000356872	ENST00000394945		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-intron	ENST00000356872	ENST00000282223		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-intron	ENST00000356872	ENST00000509978		ChiTaRS3.1			BM729347	PCED1A	chr20	2817344	-	SPOCK1	chr5	136311931	-
intron-intron	ENST00000376874	ENST00000376874		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000376874	ENST00000340724		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000376874	ENST00000544468		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000340724	ENST00000376874		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000340724	ENST00000340724		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000340724	ENST00000544468		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000544468	ENST00000376874		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000544468	ENST00000340724		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000544468	ENST00000544468		ChiTaRS3.1			BF828057	RILPL1	chr12	124016899	-	RILPL1	chr12	124016999	+
intron-intron	ENST00000348959	ENST00000348959		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000348959	ENST00000261173		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000348959	ENST00000359142		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000348959	ENST00000428670		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000348959	ENST00000393164		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000261173	ENST00000348959		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000261173	ENST00000261173		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000261173	ENST00000359142		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000261173	ENST00000428670		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000261173	ENST00000393164		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000359142	ENST00000348959		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000359142	ENST00000261173		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000359142	ENST00000359142		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000359142	ENST00000428670		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000359142	ENST00000393164		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000428670	ENST00000348959		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000428670	ENST00000261173		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000428670	ENST00000359142		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000428670	ENST00000428670		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000428670	ENST00000393164		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000393164	ENST00000348959		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000393164	ENST00000261173		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000393164	ENST00000359142		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000393164	ENST00000428670		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
intron-intron	ENST00000393164	ENST00000393164		ChiTaRS3.1			AA828877	ATP2B1	chr12	89997601	-	ATP2B1	chr12	89997397	+
5CDS-3UTR	ENST00000380550	ENST00000380550		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-intron	ENST00000380550	ENST00000398395		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380550	ENST00000380567		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380550	ENST00000340096		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380550	ENST00000490265		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-3UTR	ENST00000398395	ENST00000380550		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-intron	ENST00000398395	ENST00000398395		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-3UTR	ENST00000398395	ENST00000380567		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-3UTR	ENST00000398395	ENST00000340096		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-3UTR	ENST00000398395	ENST00000490265		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380567	ENST00000380550		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-intron	ENST00000380567	ENST00000398395		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380567	ENST00000380567		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380567	ENST00000340096		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000380567	ENST00000490265		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000340096	ENST00000380550		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-intron	ENST00000340096	ENST00000398395		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000340096	ENST00000380567		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000340096	ENST00000340096		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
5CDS-3UTR	ENST00000340096	ENST00000490265		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
3UTR-3UTR	ENST00000490265	ENST00000380550		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
3UTR-intron	ENST00000490265	ENST00000398395		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
3UTR-3UTR	ENST00000490265	ENST00000380567		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
3UTR-3UTR	ENST00000490265	ENST00000340096		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
3UTR-3UTR	ENST00000490265	ENST00000490265		ChiTaRS3.1			DN918267	OFD1	chrX	13778578	-	OFD1	chrX	13787269	-
intron-3UTR	ENST00000327435	ENST00000327435		ChiTaRS3.1			CK904967	ADI1	chr2	3502414	+	ADI1	chr2	3502455	-
intron-3UTR	ENST00000327435	ENST00000382093		ChiTaRS3.1			CK904967	ADI1	chr2	3502414	+	ADI1	chr2	3502455	-
intron-3UTR	ENST00000382093	ENST00000327435		ChiTaRS3.1			CK904967	ADI1	chr2	3502414	+	ADI1	chr2	3502455	-
intron-3UTR	ENST00000382093	ENST00000382093		ChiTaRS3.1			CK904967	ADI1	chr2	3502414	+	ADI1	chr2	3502455	-
5UTR-intron	ENST00000452400	ENST00000553817		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
5UTR-intron	ENST00000452400	ENST00000396128		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
5UTR-intron	ENST00000452400	ENST00000355081		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000267974	ENST00000553817		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000267974	ENST00000396128		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000267974	ENST00000355081		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000524223	ENST00000553817		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000524223	ENST00000396128		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
intron-intron	ENST00000524223	ENST00000355081		ChiTaRS3.1			DA677327	NCOA2	chr8	71315935	-	KLHL28	chr14	45415132	-
5CDS-intron	ENST00000375687	ENST00000429124		ChiTaRS3.1			BF355507	ASXL1	chr20	31020727	-	FTX	chrX	73437414	+
intron-intron	ENST00000542461	ENST00000429124		ChiTaRS3.1			BF355507	ASXL1	chr20	31020727	-	FTX	chrX	73437414	+
intron-intron	ENST00000375689	ENST00000429124		ChiTaRS3.1			BF355507	ASXL1	chr20	31020727	-	FTX	chrX	73437414	+
5CDS-intron	ENST00000306058	ENST00000429124		ChiTaRS3.1			BF355507	ASXL1	chr20	31020727	-	FTX	chrX	73437414	+
intron-intron	ENST00000470145	ENST00000429124		ChiTaRS3.1			BF355507	ASXL1	chr20	31020727	-	FTX	chrX	73437414	+
intron-3CDS	ENST00000520777	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000520777	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000360522	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000360522	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378710	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378710	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000357210	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000357210	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000355826	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000355826	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000518681	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000518681	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000505820	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000505820	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378712	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378712	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000504599	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000504599	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378708	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000378708	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000512004	ENST00000264639		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3CDS	ENST00000512004	ENST00000541736		ChiTaRS3.1			BQ361077	MIB2	chr1	1561050	-	PSMD3	chr17	38145990	+
intron-3UTR	ENST00000225792	ENST00000311528		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000225792	ENST00000567815		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000225792	ENST00000452368		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000225792	ENST00000393099		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000450599	ENST00000311528		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000450599	ENST00000567815		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000450599	ENST00000452368		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000450599	ENST00000393099		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000578804	ENST00000311528		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000578804	ENST00000567815		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000578804	ENST00000452368		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000578804	ENST00000393099		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000580026	ENST00000311528		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000580026	ENST00000567815		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-intron	ENST00000580026	ENST00000452368		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3UTR	ENST00000580026	ENST00000393099		ChiTaRS3.1			DA534037	DDX5	chr17	62500802	-	RPL13	chr16	89630778	+
intron-3CDS	ENST00000488498	ENST00000360162		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-3CDS	ENST00000488498	ENST00000356080		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-3CDS	ENST00000488498	ENST00000277900		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-intron	ENST00000488498	ENST00000497125		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-3CDS	ENST00000368243	ENST00000360162		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-3CDS	ENST00000368243	ENST00000356080		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-3CDS	ENST00000368243	ENST00000277900		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-intron	ENST00000368243	ENST00000497125		ChiTaRS3.1			BF924787	C1orf61	chr1	156381340	+	ADD3	chr10	111879314	-
intron-intron	ENST00000575270	ENST00000575270		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000349223		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000329524		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-3UTR	ENST00000575270	ENST00000346183		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-intron	ENST00000575270	ENST00000535127		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000349223	ENST00000575270		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000349223		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000329524		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000349223	ENST00000346183		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000349223	ENST00000535127		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000329524	ENST00000575270		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000349223		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000329524		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000329524	ENST00000346183		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000329524	ENST00000535127		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000346183	ENST00000575270		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000349223		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000329524		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000346183	ENST00000346183		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000346183	ENST00000535127		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000535127	ENST00000575270		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000349223		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000329524		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-3UTR	ENST00000535127	ENST00000346183		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
3UTR-intron	ENST00000535127	ENST00000535127		ChiTaRS3.1			BE858997	NFATC3	chr16	68260523	-	NFATC3	chr16	68261549	-
intron-intron	ENST00000355349	ENST00000343257		ChiTaRS3.1			AA211487	MYH7	chr14	23883034	+	CLCN1	chr7	143022954	-
intron-intron	ENST00000355349	ENST00000495612		ChiTaRS3.1			AA211487	MYH7	chr14	23883034	+	CLCN1	chr7	143022954	-
intron-3CDS	ENST00000399332	ENST00000526148		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000525681		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000339995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000396525		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000399332	ENST00000525995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000526148		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000525681		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000339995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000396525		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000553700	ENST00000525995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000526148		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000525681		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000339995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000396525		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000556474	ENST00000525995		ChiTaRS3.1			BE088937	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
3UTR-intron	ENST00000233336	ENST00000370818		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
3UTR-intron	ENST00000233336	ENST00000394299		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
3UTR-intron	ENST00000233336	ENST00000543339		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
5CDS-intron	ENST00000460450	ENST00000370818		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
5CDS-intron	ENST00000460450	ENST00000394299		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
5CDS-intron	ENST00000460450	ENST00000543339		ChiTaRS3.1			BC036707	TTL	chr2	113289983	+	GPC3	chrX	132690986	-
intron-3CDS	ENST00000341928	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000341928	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000341928	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000341928	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000341928	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000341928	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000544123	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000544123	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000544123	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000544123	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000544123	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000544123	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000540638	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000540638	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000540638	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000540638	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000540638	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000540638	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000342933	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000342933	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000342933	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000342933	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000342933	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000342933	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000400111	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000400111	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000400111	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000400111	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000400111	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000400111	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542652	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542652	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542652	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542652	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542652	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000542652	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000427684	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000427684	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000427684	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000427684	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000427684	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000427684	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542146	ENST00000351578		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542146	ENST00000515010		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542146	ENST00000505428		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542146	ENST00000512982		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3CDS	ENST00000542146	ENST00000540520		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-intron	ENST00000542146	ENST00000503065		ChiTaRS3.1			BF931907	EPB41L3	chr18	5393395	-	FYB	chr5	39127859	+
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BI059647	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
Frame-shit	ENST00000360761	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000360761	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000360761	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000354983	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000354983	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000354983	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000352832	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000352832	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000352832	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000442258	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000442258	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000442258	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000416767	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000416767	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-intron	ENST00000416767	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000502264	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000502264	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000502264	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515411	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515411	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000515411	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000510115	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000510115	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000510115	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000503485	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000503485	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000503485	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515165	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515165	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000515165	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507510	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507510	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000507510	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514181	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514181	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000514181	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515765	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000515765	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000515765	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507336	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507336	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000507336	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514079	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514079	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000514079	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000507896	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000507896	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-intron	ENST00000507896	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000512389	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000512389	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000512389	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000513689	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000513689	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000513689	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000513964	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000513964	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000513964	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000505165	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000505165	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-intron	ENST00000505165	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507609	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000507609	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000507609	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514717	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000514717	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000514717	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000510366	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
In-frame	ENST00000510366	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000510366	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000429973	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000429973	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000429973	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000359106	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
Frame-shit	ENST00000359106	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
5CDS-intron	ENST00000359106	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000358244	ENST00000287652		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-3CDS	ENST00000358244	ENST00000448281		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-intron	ENST00000358244	ENST00000496355		ChiTaRS3.1			AW901367	CACNA1G	chr17	48703610	-	TATDN2	chr3	10302170	-
intron-intron	ENST00000374586	ENST00000262189		ChiTaRS3.1			BE177607	TMEM245	chr9	111780092	+	KMT2C	chr7	152065087	-
intron-intron	ENST00000374586	ENST00000355193		ChiTaRS3.1			BE177607	TMEM245	chr9	111780092	+	KMT2C	chr7	152065087	-
intron-intron	ENST00000374586	ENST00000485655		ChiTaRS3.1			BE177607	TMEM245	chr9	111780092	+	KMT2C	chr7	152065087	-
intron-intron	ENST00000374586	ENST00000485241		ChiTaRS3.1			BE177607	TMEM245	chr9	111780092	+	KMT2C	chr7	152065087	-
3UTR-intron	ENST00000490337	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000490337	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000389636	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000389636	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000471742	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000471742	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000302490	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000302490	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
intron-intron	ENST00000389634	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
intron-intron	ENST00000389634	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000497291	ENST00000282111		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
3UTR-intron	ENST00000497291	ENST00000494519		ChiTaRS3.1			X83127	KCNAB1	chr3	156254664	+	TCF7L1	chr2	85437747	+
intron-intron	ENST00000269554	ENST00000269554		ChiTaRS3.1			BF849647	PIP4K2B	chr17	36943175	+	PIP4K2B	chr17	36933940	+
intron-intron	ENST00000269554	ENST00000311500		ChiTaRS3.1			BF849647	PIP4K2B	chr17	36943175	+	PIP4K2B	chr17	36933940	+
intron-intron	ENST00000311500	ENST00000269554		ChiTaRS3.1			BF849647	PIP4K2B	chr17	36943175	+	PIP4K2B	chr17	36933940	+
intron-intron	ENST00000311500	ENST00000311500		ChiTaRS3.1			BF849647	PIP4K2B	chr17	36943175	+	PIP4K2B	chr17	36933940	+
intron-3CDS	ENST00000295702	ENST00000409068		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000295702	ENST00000409085		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000295702	ENST00000406297		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-intron	ENST00000295702	ENST00000470281		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000529008	ENST00000409068		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000529008	ENST00000409085		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000529008	ENST00000406297		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-intron	ENST00000529008	ENST00000470281		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000496742	ENST00000409068		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000496742	ENST00000409085		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000496742	ENST00000406297		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-intron	ENST00000496742	ENST00000470281		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000480567	ENST00000409068		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000480567	ENST00000409085		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000480567	ENST00000406297		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-intron	ENST00000480567	ENST00000470281		ChiTaRS3.1			AA576517	SSR2	chr1	155978997	+	AAK1	chr2	69746092	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766257	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766257	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3UTR	ENST00000486890	ENST00000466801		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000486890	ENST00000409321		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000486890	ENST00000409115		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000486890	ENST00000341369		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000486890	ENST00000409683		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000486890	ENST00000410064		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000466801		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000409321		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000409115		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000341369		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000409683		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-3UTR	ENST00000322753	ENST00000410064		ChiTaRS3.1			BG481927	MINOS1	chr1	19934638	+	PTMA	chr2	232576675	+
intron-intron	ENST00000397906	ENST00000369483		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
intron-intron	ENST00000397906	ENST00000369486		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
intron-intron	ENST00000397906	ENST00000318837		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
intron-intron	ENST00000490475	ENST00000369483		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
intron-intron	ENST00000490475	ENST00000369486		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
intron-intron	ENST00000490475	ENST00000318837		ChiTaRS3.1			CV373587	TTC28	chr22	28980928	+	IGSF3	chr1	117186261	+
3UTR-intron	ENST00000280154	ENST00000468573		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
3UTR-intron	ENST00000280154	ENST00000255380		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
3UTR-intron	ENST00000393104	ENST00000468573		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
3UTR-intron	ENST00000393104	ENST00000255380		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
intron-intron	ENST00000481353	ENST00000468573		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
intron-intron	ENST00000481353	ENST00000255380		ChiTaRS3.1			AW367527	PDCD4	chr10	112658603	+	CHRM3	chr1	239757133	-
intron-intron	ENST00000533902	ENST00000533902		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000280258		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000441050		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000531521		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000533902		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000280258		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000441050		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000531521		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000533902		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000280258		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000441050		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000531521		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000533902		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000280258		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000441050		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000531521		ChiTaRS3.1			CV359287	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
3UTR-3CDS	ENST00000393892	ENST00000390237		ChiTaRS3.1			BE842567	CNP	chr17	40126234	-	IGKC	chr2	89157058	+
3UTR-3CDS	ENST00000472031	ENST00000390237		ChiTaRS3.1			BE842567	CNP	chr17	40126234	-	IGKC	chr2	89157058	+
3UTR-3CDS	ENST00000591072	ENST00000390237		ChiTaRS3.1			BE842567	CNP	chr17	40126234	-	IGKC	chr2	89157058	+
intron-3CDS	ENST00000592446	ENST00000390237		ChiTaRS3.1			BE842567	CNP	chr17	40126234	-	IGKC	chr2	89157058	+
3UTR-3CDS	ENST00000393888	ENST00000390237		ChiTaRS3.1			BE842567	CNP	chr17	40126234	-	IGKC	chr2	89157058	+
intron-intron	ENST00000457167	ENST00000295240		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000457167	ENST00000554017		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000457167	ENST00000392663		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000426588	ENST00000295240		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000426588	ENST00000554017		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000426588	ENST00000392663		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000316603	ENST00000295240		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000316603	ENST00000554017		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000316603	ENST00000392663		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000589547	ENST00000295240		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000589547	ENST00000554017		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
intron-intron	ENST00000589547	ENST00000392663		ChiTaRS3.1			AW814887	DNAJC7	chr17	40135593	-	BBS5	chr2	170360332	-
5CDS-intron	ENST00000375807	ENST00000375807		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000375807	ENST00000339901		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000375807	ENST00000534113		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000375807	ENST00000470305		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000339901	ENST00000375807		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000339901	ENST00000339901		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000339901	ENST00000534113		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000339901	ENST00000470305		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000534113	ENST00000375807		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000534113	ENST00000339901		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000534113	ENST00000534113		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
5CDS-intron	ENST00000534113	ENST00000470305		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
intron-intron	ENST00000470305	ENST00000375807		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
intron-intron	ENST00000470305	ENST00000339901		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
intron-intron	ENST00000470305	ENST00000534113		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
intron-intron	ENST00000470305	ENST00000470305		ChiTaRS3.1			AU253387	SECISBP2	chr9	91949494	-	SECISBP2	chr9	91954864	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW433727	MALAT1	chr11	65268300	+	MALAT1	chr11	65266762	+
intron-intron	ENST00000262030	ENST00000466801		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000262030	ENST00000409321		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000262030	ENST00000409115		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000262030	ENST00000341369		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000262030	ENST00000409683		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000262030	ENST00000410064		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000466801		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000409321		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000409115		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000341369		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000409683		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000552919	ENST00000410064		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000466801		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000409321		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000409115		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000341369		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000409683		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000550162	ENST00000410064		ChiTaRS3.1			CV344647	ATP5B	chr12	57037273	-	PTMA	chr2	232573417	-
intron-intron	ENST00000419022	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000419022	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000419022	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000419022	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000419022	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379132	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379132	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379132	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379132	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379132	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379129	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379129	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379129	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379129	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379129	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379107	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379107	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379107	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379107	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379107	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000241001	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000241001	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000241001	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000241001	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000241001	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379115	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379115	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379115	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379115	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379115	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379111	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379111	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379111	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379111	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379111	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379123	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379123	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379123	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379123	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000379123	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000533156	ENST00000355078		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000533156	ENST00000302763		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000533156	ENST00000518825		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000533156	ENST00000520400		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-intron	ENST00000533156	ENST00000540387		ChiTaRS3.1			M86017	PAX6	chr11	31811059	-	CTNNA1	chr5	138124956	+
intron-3CDS	ENST00000330498	ENST00000314485		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-3CDS	ENST00000330498	ENST00000368086		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-intron	ENST00000330498	ENST00000460351		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-3CDS	ENST00000564197	ENST00000314485		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-3CDS	ENST00000564197	ENST00000368086		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-intron	ENST00000564197	ENST00000460351		ChiTaRS3.1			BF944197	SLC5A2	chr16	31501280	+	IGSF8	chr1	160062152	-
intron-intron	ENST00000268483	ENST00000360284		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000545748		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000550082		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000547206		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000243050		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000394825		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000394824		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000268483	ENST00000548232		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000360284		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000545748		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000550082		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000547206		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000243050		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000394825		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000394824		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000423037	ENST00000548232		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000360284		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000545748		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000550082		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000547206		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000243050		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000394825		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000394824		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000426362	ENST00000548232		ChiTaRS3.1			CD517507	TXNL4B	chr16	72120109	-	NR4A1	chr12	52446078	+
intron-intron	ENST00000413658	ENST00000476886		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000413658	ENST00000465576		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000424697	ENST00000476886		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000424697	ENST00000465576		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000303915	ENST00000476886		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000303915	ENST00000465576		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000299667	ENST00000476886		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000299667	ENST00000465576		ChiTaRS3.1			BI057717	ZNF3	chr7	99671272	-	CLRN1-AS1	chr3	150700889	+
intron-intron	ENST00000263119	ENST00000393561		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000263119	ENST00000222399		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000263119	ENST00000393560		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000263119	ENST00000474380		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000405822	ENST00000393561		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000405822	ENST00000222399		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000405822	ENST00000393560		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000405822	ENST00000474380		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000398319	ENST00000393561		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000398319	ENST00000222399		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000398319	ENST00000393560		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000398319	ENST00000474380		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000337989	ENST00000393561		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000337989	ENST00000222399		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000337989	ENST00000393560		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000337989	ENST00000474380		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000485008	ENST00000393561		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000485008	ENST00000222399		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000485008	ENST00000393560		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000485008	ENST00000474380		ChiTaRS3.1			BF934327	CABIN1	chr22	24499214	-	LAMB1	chr7	107583013	-
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050787	KMT2A	chr11	118355501	+	AFF1	chr4	87977475	+
3UTR-3CDS	ENST00000368476	ENST00000084798		ChiTaRS3.1			BF954747	CHRNB2	chr1	154552109	-	CA11	chr19	49143438	+
intron-intron	ENST00000415807	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000415807	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000336824	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000416957	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000392699	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000421757	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000423424	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000415807		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000336824		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000416957		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000392699		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000421757		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000423424		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000476794	ENST00000476794		ChiTaRS3.1			CV339967	FNDC3B	chr3	171965321	-	FNDC3B	chr3	171969333	-
intron-intron	ENST00000375400	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375400		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375398		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000355867		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000535393		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000460007		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000538146		ChiTaRS3.1			BG993737	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000289081	ENST00000396353		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000289081	ENST00000396355		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000289081	ENST00000396354		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000289081	ENST00000342673		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-3UTR	ENST00000289081	ENST00000571896		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000375305	ENST00000396353		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000375305	ENST00000396355		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000375305	ENST00000396354		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000375305	ENST00000342673		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-3UTR	ENST00000375305	ENST00000571896		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000464653	ENST00000396353		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000464653	ENST00000396355		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000464653	ENST00000396354		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-intron	ENST00000464653	ENST00000342673		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-3UTR	ENST00000464653	ENST00000571896		ChiTaRS3.1			AF390860	FANCC	chr9	97918256	-	NDE1	chr16	15815979	-
intron-3UTR	ENST00000382369	ENST00000329286		ChiTaRS3.1			T06477	C20orf96	chr20	257387	+	RAB12	chr18	8639264	-
intron-3UTR	ENST00000360321	ENST00000329286		ChiTaRS3.1			T06477	C20orf96	chr20	257387	+	RAB12	chr18	8639264	-
intron-3UTR	ENST00000400269	ENST00000329286		ChiTaRS3.1			T06477	C20orf96	chr20	257387	+	RAB12	chr18	8639264	-
intron-3UTR	ENST00000499869	ENST00000499869		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000499869	ENST00000382451		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000499869	ENST00000382452		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000499869	ENST00000515743		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000499869	ENST00000502702		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382451	ENST00000499869		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382451	ENST00000382451		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382451	ENST00000382452		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000382451	ENST00000515743		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000382451	ENST00000502702		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382452	ENST00000499869		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382452	ENST00000382451		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000382452	ENST00000382452		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000382452	ENST00000515743		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000382452	ENST00000502702		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000515743	ENST00000499869		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000515743	ENST00000382451		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000515743	ENST00000382452		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000515743	ENST00000515743		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000515743	ENST00000502702		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000502702	ENST00000499869		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000502702	ENST00000382451		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-3UTR	ENST00000502702	ENST00000382452		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000502702	ENST00000515743		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
intron-intron	ENST00000502702	ENST00000502702		ChiTaRS3.1			AA578377	WDR1	chr4	10076141	-	WDR1	chr4	10076113	+
3UTR-3UTR	ENST00000380737	ENST00000380737		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000380737	ENST00000315985		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-intron	ENST00000380737	ENST00000523473		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000315985	ENST00000380737		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000315985	ENST00000315985		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-intron	ENST00000315985	ENST00000523473		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-3UTR	ENST00000523473	ENST00000380737		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-3UTR	ENST00000523473	ENST00000315985		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
intron-intron	ENST00000523473	ENST00000523473		ChiTaRS3.1			AW879127	PPP2R2A	chr8	26228218	+	PPP2R2A	chr8	26228107	-
3UTR-3UTR	ENST00000374266	ENST00000371558		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-intron	ENST00000374266	ENST00000346330		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-intron	ENST00000374266	ENST00000469205		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-3UTR	ENST00000374266	ENST00000371569		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-3UTR	ENST00000270812	ENST00000371558		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-intron	ENST00000270812	ENST00000346330		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-intron	ENST00000270812	ENST00000469205		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
3UTR-3UTR	ENST00000270812	ENST00000371569		ChiTaRS3.1			BM462327	ZNF593	chr1	26497277	+	UBE2A	chrX	118718067	+
intron-intron	ENST00000007414	ENST00000390548		ChiTaRS3.1			AK000267	OSBPL7	chr17	45890694	-	IGHG1	chr22	23243558	+
intron-intron	ENST00000392507	ENST00000390548		ChiTaRS3.1			AK000267	OSBPL7	chr17	45890694	-	IGHG1	chr22	23243558	+
5CDS-intron	ENST00000239938	ENST00000266000		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000374542		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000414083		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000477162		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000455860		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000436311		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000472399		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000399060		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000383062		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000461796		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000433482		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000445009		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000469277		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000399344		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000383194		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000494562		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
5CDS-intron	ENST00000239938	ENST00000414388		ChiTaRS3.1			CR975017	EGR1	chr5	137803395	+	DAXX	chr6	4522398	-
intron-3CDS	ENST00000535648	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000535648	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000535648	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000535648	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000535648	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000535648	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000535648	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000346706	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000346706	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000340094	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000340094	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000345230	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000345230	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000350763	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000350763	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000341037	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000341037	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000423613	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000423613	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000537320	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000537320	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000542877	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000542877	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000288398		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000358278		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000560445		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000403994		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000357980		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-3CDS	ENST00000481475	ENST00000559556		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000559397		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000267996		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000334895		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000404484		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000560959		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000559281		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
intron-intron	ENST00000481475	ENST00000317516		ChiTaRS3.1			Z24727	TNC	chr9	117810513	+	TPM1	chr15	63336262	+
5CDS-intron	ENST00000295598	ENST00000565468		ChiTaRS3.1			BF800117	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
5CDS-intron	ENST00000537345	ENST00000565468		ChiTaRS3.1			BF800117	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
5CDS-intron	ENST00000369496	ENST00000565468		ChiTaRS3.1			BF800117	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
intron-intron	ENST00000491156	ENST00000565468		ChiTaRS3.1			BF800117	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
Frame-shit	ENST00000493429	ENST00000493429		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000493429	ENST00000467291		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000493429	ENST00000360937		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000493429	ENST00000416793		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
5CDS-intron	ENST00000493429	ENST00000480582		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000467291	ENST00000493429		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000467291	ENST00000467291		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000467291	ENST00000360937		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000467291	ENST00000416793		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
5CDS-intron	ENST00000467291	ENST00000480582		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000360937	ENST00000493429		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000360937	ENST00000467291		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000360937	ENST00000360937		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000360937	ENST00000416793		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
5CDS-intron	ENST00000360937	ENST00000480582		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000416793	ENST00000493429		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000416793	ENST00000467291		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000416793	ENST00000360937		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
Frame-shit	ENST00000416793	ENST00000416793		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
5CDS-intron	ENST00000416793	ENST00000480582		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-3CDS	ENST00000480582	ENST00000493429		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-3CDS	ENST00000480582	ENST00000467291		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-3CDS	ENST00000480582	ENST00000360937		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-3CDS	ENST00000480582	ENST00000416793		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-intron	ENST00000480582	ENST00000480582		ChiTaRS3.1			BP274807	AOC1	chr7	150554665	+	AOC1	chr7	150553659	+
intron-3UTR	ENST00000607252	ENST00000316878		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-5UTR	ENST00000607252	ENST00000501501		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-3UTR	ENST00000318149	ENST00000316878		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-5UTR	ENST00000318149	ENST00000501501		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-3UTR	ENST00000361428	ENST00000316878		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-5UTR	ENST00000361428	ENST00000501501		ChiTaRS3.1			BF858817	ZNF318	chr6	43336672	+	PPP1R9B	chr17	48211511	+
intron-intron	ENST00000260408	ENST00000378330		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000260408	ENST00000301030		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000260408	ENST00000563291		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000260408	ENST00000567736		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000402627	ENST00000378330		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000402627	ENST00000301030		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000402627	ENST00000563291		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000402627	ENST00000567736		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000561288	ENST00000378330		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000561288	ENST00000301030		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000561288	ENST00000563291		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000561288	ENST00000567736		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000396140	ENST00000378330		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000396140	ENST00000301030		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000396140	ENST00000563291		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000396140	ENST00000567736		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000558733	ENST00000378330		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000558733	ENST00000301030		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000558733	ENST00000563291		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
intron-intron	ENST00000558733	ENST00000567736		ChiTaRS3.1			CV342067	ADAM10	chr15	59001699	+	ANKRD11	chr16	89478078	+
3UTR-3UTR	ENST00000378883	ENST00000378883		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378883	ENST00000378896		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000378883	ENST00000378886		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378883	ENST00000265187		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000378883		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000378896		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000378896	ENST00000378886		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000378896	ENST00000265187		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000378883		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000378896		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-intron	ENST00000378886	ENST00000378886		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3UTR	ENST00000378886	ENST00000265187		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000378883		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000378896		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-intron	ENST00000265187	ENST00000378886		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
3UTR-3UTR	ENST00000265187	ENST00000265187		ChiTaRS3.1			AA225697	MCM8	chr20	5975383	+	MCM8	chr20	5975253	-
intron-3CDS	ENST00000534307	ENST00000399804		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
intron-3CDS	ENST00000534307	ENST00000286835		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
intron-3CDS	ENST00000534307	ENST00000434667		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
Frame-shit	ENST00000528302	ENST00000399804		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
Frame-shit	ENST00000528302	ENST00000286835		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
In-frame	ENST00000528302	ENST00000434667		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
Frame-shit	ENST00000322535	ENST00000399804		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
Frame-shit	ENST00000322535	ENST00000286835		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
In-frame	ENST00000322535	ENST00000434667		ChiTaRS3.1			BF820647	SF3B2	chr11	65828091	+	SCAF4	chr21	33044014	-
intron-intron	ENST00000324446	ENST00000324446		ChiTaRS3.1			AA557757	TTTY14	chrY	21152691	+	TTTY14	chrY	21152773	-
intron-3CDS	ENST00000314100	ENST00000314100		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000481247		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000419706		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000408958		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000403056		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000314100		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000481247		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000419706		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000408958		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000403056		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000314100		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000481247		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000419706		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000408958		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000403056		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000314100		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000481247		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000419706		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000408958		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000403056		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000314100		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000481247		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000419706		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000408958		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000403056		ChiTaRS3.1			T77387	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3UTR	ENST00000380542	ENST00000502976		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000380542	ENST00000422453		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000380542	ENST00000451728		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000380542	ENST00000446936		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000380542	ENST00000500450		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000380542	ENST00000504813		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-intron	ENST00000380542	ENST00000441626		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000502976		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000422453		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000451728		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000446936		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000500450		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000469089	ENST00000504813		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-intron	ENST00000469089	ENST00000441626		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000502976		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000422453		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000451728		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000446936		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000500450		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-3UTR	ENST00000526115	ENST00000504813		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-intron	ENST00000526115	ENST00000441626		ChiTaRS3.1			AW796677	NAP1L4	chr11	3003185	-	CNBP	chr3	128888575	-
intron-intron	ENST00000340281	ENST00000336278		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000340281	ENST00000528525		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000361911	ENST00000336278		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000361911	ENST00000528525		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000370447	ENST00000336278		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000370447	ENST00000528525		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000455342	ENST00000336278		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
intron-intron	ENST00000455342	ENST00000528525		ChiTaRS3.1			BF355767	ZNF326	chr1	90467418	+	SNTB2	chr16	69239384	+
5CDS-intron	ENST00000356231	ENST00000264870		ChiTaRS3.1			AY358467	CDAN1	chr15	43015760	-	F13A1	chr6	6308858	-
intron-3CDS	ENST00000371348	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371348	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371348	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371348	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000371348	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000371348	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371344	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371344	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371344	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371344	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000371344	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000371344	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000234831	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000234831	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000234831	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000234831	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000234831	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000234831	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371341	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371341	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371341	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371341	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000371341	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000371341	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000470395	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000470395	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000470395	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000470395	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000470395	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000470395	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371337	ENST00000371348		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371337	ENST00000371344		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371337	ENST00000234831		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000371337	ENST00000371341		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-5UTR	ENST00000371337	ENST00000470395		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-intron	ENST00000371337	ENST00000371337		ChiTaRS3.1			BU675307	TMEM59	chr1	54497841	+	TMEM59	chr1	54502303	-
intron-3CDS	ENST00000448276	ENST00000317829		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000448276	ENST00000317837		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000448276	ENST00000433060		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000448276	ENST00000539727		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-3CDS	ENST00000323347	ENST00000317829		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000323347	ENST00000317837		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000323347	ENST00000433060		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000323347	ENST00000539727		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-3CDS	ENST00000225742	ENST00000317829		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000225742	ENST00000317837		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000225742	ENST00000433060		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-intron	ENST00000225742	ENST00000539727		ChiTaRS3.1			BI028147	SMARCD2	chr17	61913009	+	AMOTL1	chr11	94592831	+
intron-3UTR	ENST00000324589	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000324589	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000349752	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000406653	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000356174	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000420311	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000324589		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000349752		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000406653		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000356174		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000420311		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000486564	ENST00000486564		ChiTaRS3.1			BU679527	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000366956	ENST00000366956		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000366956	ENST00000543945		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000366956	ENST00000491277		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-3UTR	ENST00000543945	ENST00000366956		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000543945	ENST00000543945		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000543945	ENST00000491277		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-3UTR	ENST00000491277	ENST00000366956		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000491277	ENST00000543945		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000491277	ENST00000491277		ChiTaRS3.1			AW276697	PTPN14	chr1	214527632	-	PTPN14	chr1	214527378	+
intron-intron	ENST00000360319	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
intron-intron	ENST00000422373	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
intron-intron	ENST00000369850	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
intron-intron	ENST00000369856	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
intron-intron	ENST00000344736	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
intron-intron	ENST00000498491	ENST00000330978		ChiTaRS3.1			BE075497	FLNA	chrX	153594704	+	BOLA2	chr16	30080856	-
5CDS-intron	ENST00000167462	ENST00000458477		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000228307		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000424649		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000397506		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000536957		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000267257		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000167462	ENST00000538144		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000458477		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000228307		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000424649		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000397506		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000536957		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000267257		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000375227	ENST00000538144		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000458477		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000228307		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000424649		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000397506		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000536957		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000267257		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000392550	ENST00000538144		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000458477		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000228307		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000424649		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000397506		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000536957		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000267257		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-intron	ENST00000578363	ENST00000538144		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000458477		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000228307		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000424649		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000397506		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000536957		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000267257		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
5CDS-intron	ENST00000577200	ENST00000538144		ChiTaRS3.1			BF872537	LLGL2	chr17	73564573	-	PXN	chr12	120651158	+
intron-3UTR	ENST00000327492	ENST00000235345		ChiTaRS3.1			AA938727	TOB2	chr22	41837670	+	SLC35D1	chr1	67465719	-
intron-intron	ENST00000327492	ENST00000506472		ChiTaRS3.1			AA938727	TOB2	chr22	41837670	+	SLC35D1	chr1	67465719	-
intron-intron	ENST00000254108	ENST00000344691		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000325074		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000437180		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000300305		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000399240		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000486278		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000494829		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000254108	ENST00000358356		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000344691		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000325074		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000437180		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000300305		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000399240		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000486278		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000494829		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000380244	ENST00000358356		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000344691		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000325074		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000437180		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000300305		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000399240		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000486278		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000494829		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000568685	ENST00000358356		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000344691		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000325074		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000437180		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000300305		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000399240		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000486278		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000494829		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000474990	ENST00000358356		ChiTaRS3.1			BF889377	FUS	chr16	31200287	-	RUNX1	chr21	36226942	+
intron-intron	ENST00000481781	ENST00000381395		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-5UTR	ENST00000481781	ENST00000381406		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-5UTR	ENST00000481781	ENST00000416167		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000481781	ENST00000300632		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000481781	ENST00000434045		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000481781	ENST00000381392		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000481781	ENST00000381389		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000481781	ENST00000418738		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000381395		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-5UTR	ENST00000397270	ENST00000381406		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-5UTR	ENST00000397270	ENST00000416167		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000300632		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000434045		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000381392		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000381389		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-intron	ENST00000397270	ENST00000418738		ChiTaRS3.1			DB359087	INS-IGF2	chr11	2151645	-	IGF2	chr11	2159824	-
intron-3CDS	ENST00000367311	ENST00000340802		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000367311	ENST00000359794		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367311	ENST00000551548		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367311	ENST00000395233		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367311	ENST00000551804		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367311	ENST00000547587		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367311	ENST00000312352		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000485436	ENST00000340802		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000485436	ENST00000359794		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000485436	ENST00000551548		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000485436	ENST00000395233		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000485436	ENST00000551804		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000485436	ENST00000547587		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000485436	ENST00000312352		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000367309	ENST00000340802		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000367309	ENST00000359794		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367309	ENST00000551548		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367309	ENST00000395233		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367309	ENST00000551804		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367309	ENST00000547587		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-intron	ENST00000367309	ENST00000312352		ChiTaRS3.1			DA368227	PHLDA3	chr1	201438246	-	PFKM	chr12	48533074	+
intron-3CDS	ENST00000417201	ENST00000368738		ChiTaRS3.1			BF893077	RBM18	chr9	125002951	-	S100A9	chr1	153333155	-
intron-3CDS	ENST00000483428	ENST00000368738		ChiTaRS3.1			BF893077	RBM18	chr9	125002951	-	S100A9	chr1	153333155	-
5CDS-3UTR	ENST00000252506	ENST00000292427		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
5CDS-3UTR	ENST00000252506	ENST00000517471		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
5CDS-3UTR	ENST00000252506	ENST00000377675		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
5UTR-3UTR	ENST00000375769	ENST00000292427		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
5UTR-3UTR	ENST00000375769	ENST00000517471		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
5UTR-3UTR	ENST00000375769	ENST00000377675		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
3UTR-3UTR	ENST00000494726	ENST00000292427		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
3UTR-3UTR	ENST00000494726	ENST00000517471		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
3UTR-3UTR	ENST00000494726	ENST00000377675		ChiTaRS3.1			AV704757	GADD45G	chr9	92220048	+	CYP11B1	chr8	143955270	-
intron-3CDS	ENST00000506181	ENST00000415355		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
intron-3CDS	ENST00000506181	ENST00000216341		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
intron-3CDS	ENST00000506181	ENST00000382540		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
intron-3CDS	ENST00000506181	ENST00000382542		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
intron-3UTR	ENST00000506181	ENST00000526004		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
In-frame	ENST00000536354	ENST00000415355		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
In-frame	ENST00000536354	ENST00000216341		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
In-frame	ENST00000536354	ENST00000382540		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
In-frame	ENST00000536354	ENST00000382542		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
5CDS-3UTR	ENST00000536354	ENST00000526004		ChiTaRS3.1			BG314637	TDO2	chr4	156828925	-	GZMB	chr14	25101153	+
intron-3CDS	ENST00000547776	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547776	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547776	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000547776	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000329257	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000329257	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000329257	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000329257	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547010	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547010	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547010	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000547010	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000341752	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000341752	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000341752	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000341752	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549558	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549558	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549558	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000549558	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550693	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550693	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550693	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000550693	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549025	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549025	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549025	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000549025	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549493	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549493	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000549493	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000549493	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547446	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547446	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000547446	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000547446	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000333732	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000333732	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000333732	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000333732	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546568	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546568	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546568	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000546568	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000332712	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000332712	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000332712	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000332712	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546960	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546960	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000546960	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000546960	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550833	ENST00000333646		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550833	ENST00000374102		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000550833	ENST00000374080		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-intron	ENST00000550833	ENST00000462984		ChiTaRS3.1			BF361917	ANKS1B	chr12	99784255	+	MED12	chrX	70343465	-
intron-3CDS	ENST00000336219	ENST00000336219		ChiTaRS3.1			CR985247	CDCA4	chr14	105478045	+	CDCA4	chr14	105477933	-
intron-3CDS	ENST00000336219	ENST00000392590		ChiTaRS3.1			CR985247	CDCA4	chr14	105478045	+	CDCA4	chr14	105477933	-
intron-3CDS	ENST00000392590	ENST00000336219		ChiTaRS3.1			CR985247	CDCA4	chr14	105478045	+	CDCA4	chr14	105477933	-
intron-3CDS	ENST00000392590	ENST00000392590		ChiTaRS3.1			CR985247	CDCA4	chr14	105478045	+	CDCA4	chr14	105477933	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			AI342437	INS-IGF2	chr11	2150577	-	INS-IGF2	chr11	2151424	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			AI342437	INS-IGF2	chr11	2150577	-	INS-IGF2	chr11	2151424	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			AI342437	INS-IGF2	chr11	2150577	-	INS-IGF2	chr11	2151424	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			AI342437	INS-IGF2	chr11	2150577	-	INS-IGF2	chr11	2151424	-
5CDS-5UTR	ENST00000388948	ENST00000486559		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-5UTR	ENST00000388948	ENST00000541324		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-intron	ENST00000388948	ENST00000370960		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-intron	ENST00000388948	ENST00000370959		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-5UTR	ENST00000284395	ENST00000486559		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-5UTR	ENST00000284395	ENST00000541324		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-intron	ENST00000284395	ENST00000370960		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
5CDS-intron	ENST00000284395	ENST00000370959		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-5UTR	ENST00000532029	ENST00000486559		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-5UTR	ENST00000532029	ENST00000541324		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-intron	ENST00000532029	ENST00000370960		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-intron	ENST00000532029	ENST00000370959		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-5UTR	ENST00000532145	ENST00000486559		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-5UTR	ENST00000532145	ENST00000541324		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-intron	ENST00000532145	ENST00000370960		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
intron-intron	ENST00000532145	ENST00000370959		ChiTaRS3.1			BX477527	LRRK1	chr15	101555538	+	GSTA4	chr6	52850334	-
In-frame	ENST00000299421	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000299421	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000299421	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000299421	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000299421	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-intron	ENST00000299421	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-3CDS	ENST00000537806	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000537806	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000537806	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000537806	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000537806	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-intron	ENST00000537806	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
In-frame	ENST00000420936	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000420936	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000420936	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000420936	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000420936	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-intron	ENST00000420936	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
In-frame	ENST00000528995	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000528995	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000528995	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000528995	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000528995	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-intron	ENST00000528995	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
In-frame	ENST00000396751	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000396751	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000396751	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000396751	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-5UTR	ENST00000396751	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
5CDS-intron	ENST00000396751	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-3CDS	ENST00000526711	ENST00000299421		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000526711	ENST00000537806		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000526711	ENST00000420936		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000526711	ENST00000528995		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-5UTR	ENST00000526711	ENST00000396751		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-intron	ENST00000526711	ENST00000526711		ChiTaRS3.1			W23047	ILK	chr11	6629296	-	ILK	chr11	6629636	+
intron-3UTR	ENST00000368020	ENST00000368020		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368020	ENST00000368021		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368020	ENST00000435396		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-intron	ENST00000368020	ENST00000368019		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368021	ENST00000368020		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368021	ENST00000368021		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368021	ENST00000435396		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-intron	ENST00000368021	ENST00000368019		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000435396	ENST00000368020		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000435396	ENST00000368021		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000435396	ENST00000435396		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-intron	ENST00000435396	ENST00000368019		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368019	ENST00000368020		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368019	ENST00000368021		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3UTR	ENST00000368019	ENST00000435396		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-intron	ENST00000368019	ENST00000368019		ChiTaRS3.1			BF905987	USF1	chr1	161009380	+	USF1	chr1	161009420	-
intron-3CDS	ENST00000421182	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000421182	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000421182	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000421182	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000421182	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000421182	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357867	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357867	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357867	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357867	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357867	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357867	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000323926	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000323926	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000323926	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000323926	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000323926	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000323926	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000336916	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000336916	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000336916	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000336916	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000336916	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000336916	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000354785	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000354785	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000354785	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000354785	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000354785	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000354785	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357009	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357009	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357009	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357009	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000357009	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000357009	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000346544	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000346544	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000346544	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000346544	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000346544	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000346544	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000345488	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000345488	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000345488	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000345488	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000345488	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000345488	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000359671	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000359671	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000359671	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000359671	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000359671	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000359671	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000446046	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000446046	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000446046	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000446046	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000446046	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000446046	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000443816	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000443816	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000443816	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000443816	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000443816	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000443816	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000432072	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000432072	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000432072	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000432072	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000432072	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000432072	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000356005	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000356005	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000356005	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000356005	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000356005	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000356005	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000490833	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000490833	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000490833	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000490833	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000490833	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000490833	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000426059	ENST00000421182		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000426059	ENST00000357867		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000426059	ENST00000323926		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000426059	ENST00000336916		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000426059	ENST00000354785		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000357009		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000346544		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000345488		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000359671		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000446046		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000443816		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000432072		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000356005		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000490833		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-intron	ENST00000426059	ENST00000426059		ChiTaRS3.1			BG163577	FN1	chr2	216236689	+	FN1	chr2	216235108	-
intron-3CDS	ENST00000573308	ENST00000322723		ChiTaRS3.1			BQ028497	TAPT1-AS1	chr4	16257927	+	NCL	chr2	232322401	+
intron-3CDS	ENST00000573950	ENST00000322723		ChiTaRS3.1			BQ028497	TAPT1-AS1	chr4	16257927	+	NCL	chr2	232322401	+
3UTR-3CDS	ENST00000570786	ENST00000322723		ChiTaRS3.1			BQ028497	TAPT1-AS1	chr4	16257927	+	NCL	chr2	232322401	+
intron-3CDS	ENST00000598538	ENST00000322723		ChiTaRS3.1			BQ028497	TAPT1-AS1	chr4	16257927	+	NCL	chr2	232322401	+
intron-intron	ENST00000303400	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000303400	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505177	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000264750	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000452175	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000514708	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000510794	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000505839	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000303400		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000505177		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000264750		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000452175		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000514708		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000510794		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000505839		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
intron-intron	ENST00000512289	ENST00000512289		ChiTaRS3.1			T70597	MAEA	chr4	1320557	+	MAEA	chr4	1319809	+
In-frame	ENST00000444961	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000444961	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000444961	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000444961	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000444961	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000444961	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000448882	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000448882	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000448882	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000448882	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000448882	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000448882	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000557098	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000557098	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000557098	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000557098	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000557098	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000557098	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
Frame-shit	ENST00000298902	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
Frame-shit	ENST00000298902	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000298902	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000298902	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000298902	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000298902	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000557634	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
In-frame	ENST00000557634	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000557634	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000557634	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000557634	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000557634	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
Frame-shit	ENST00000555744	ENST00000444961		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
Frame-shit	ENST00000555744	ENST00000448882		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000555744	ENST00000557098		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-5UTR	ENST00000555744	ENST00000298902		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000555744	ENST00000557634		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
5CDS-intron	ENST00000555744	ENST00000555744		ChiTaRS3.1			BG230457	IFI27	chr14	94582861	+	IFI27	chr14	94581206	+
intron-intron	ENST00000375631	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000375631	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000375631	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000423382	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000423382	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000439648	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000439648	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000434496	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000434496	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000422978	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000422978	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000229725	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000229725	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000437432	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000437432	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000375631		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000423382		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000439648		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000434496		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000422978		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000229725		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-intron	ENST00000411774	ENST00000437432		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000411774	ENST00000411774		ChiTaRS3.1			AI368907	NEU1	chr6	3160129	-	NEU1	chr6	3159826	+
intron-3UTR	ENST00000413040	ENST00000432063		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000413040	ENST00000338608		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000413040	ENST00000366212		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000413040	ENST00000538185		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000568733	ENST00000432063		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000568733	ENST00000338608		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000568733	ENST00000366212		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000568733	ENST00000538185		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000566856	ENST00000432063		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000566856	ENST00000338608		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000566856	ENST00000366212		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000566856	ENST00000538185		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000355851	ENST00000432063		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000355851	ENST00000338608		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000355851	ENST00000366212		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000355851	ENST00000538185		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000477666	ENST00000432063		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000477666	ENST00000338608		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000477666	ENST00000366212		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
intron-3UTR	ENST00000477666	ENST00000538185		ChiTaRS3.1			CD723237	NUB1	chr7	151072913	-	PPP1R32	chr11	61258348	+
Frame-shit	ENST00000261712	ENST00000261712		ChiTaRS3.1			BF083127	PSMD11	chr17	30806292	-	PSMD11	chr17	30796104	+
Frame-shit	ENST00000261712	ENST00000457654		ChiTaRS3.1			BF083127	PSMD11	chr17	30806292	-	PSMD11	chr17	30796104	+
Frame-shit	ENST00000457654	ENST00000261712		ChiTaRS3.1			BF083127	PSMD11	chr17	30806292	-	PSMD11	chr17	30796104	+
Frame-shit	ENST00000457654	ENST00000457654		ChiTaRS3.1			BF083127	PSMD11	chr17	30806292	-	PSMD11	chr17	30796104	+
intron-intron	ENST00000368226	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368226	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368227	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000532331	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368213	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368210	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368215	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000368207	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000524481	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000324631		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000377328		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000352115		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000282343		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000377331		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000396576		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000377319		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000377329		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000377315		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000525459	ENST00000467034		ChiTaRS3.1			BQ380638	PTPRK	chr6	128407537	-	CACNB2	chr10	18679996	+
intron-intron	ENST00000277746	ENST00000299563		ChiTaRS3.1			CA397927	NRBF2	chr10	64912682	+	RNF169	chr11	74525717	-
intron-intron	ENST00000435510	ENST00000299563		ChiTaRS3.1			CA397927	NRBF2	chr10	64912682	+	RNF169	chr11	74525717	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911177	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911177	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911177	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911177	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3UTR	ENST00000444837	ENST00000548052		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000444837	ENST00000551281		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000444837	ENST00000228476		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000569500	ENST00000548052		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000569500	ENST00000551281		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000569500	ENST00000228476		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000379811	ENST00000548052		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000379811	ENST00000551281		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000379811	ENST00000228476		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000568675	ENST00000548052		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000568675	ENST00000551281		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000568675	ENST00000228476		ChiTaRS3.1			X13227	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000476749	ENST00000398309		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000376104		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000418306		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000280241		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000543673		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000376106		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000330014		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000537455		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000524982		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000532653		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000531015		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000398301		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000426717		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000404783		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000398304		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000530800		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000476749	ENST00000472545		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000398309		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000376104		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000418306		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000280241		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000543673		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000376106		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000330014		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000537455		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000524982		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000532653		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000531015		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000398301		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000426717		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000404783		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000398304		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000530800		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000372780	ENST00000472545		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000398309		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000376104		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000418306		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000280241		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000543673		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000376106		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000330014		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000537455		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000524982		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000532653		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000531015		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000398301		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000426717		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000404783		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000398304		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000530800		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
5CDS-intron	ENST00000329035	ENST00000472545		ChiTaRS3.1			AA757827	TCEAL2	chrX	101382471	-	DLG2	chr11	84132425	+
intron-intron	ENST00000557325	ENST00000557325		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-3UTR	ENST00000557325	ENST00000334696		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000557325	ENST00000556242		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000557325	ENST00000554664		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000334696	ENST00000557325		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-3UTR	ENST00000334696	ENST00000334696		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000334696	ENST00000556242		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000334696	ENST00000554664		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000556242	ENST00000557325		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-3UTR	ENST00000556242	ENST00000334696		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000556242	ENST00000556242		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000556242	ENST00000554664		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000554664	ENST00000557325		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-3UTR	ENST00000554664	ENST00000334696		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000554664	ENST00000556242		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000554664	ENST00000554664		ChiTaRS3.1			BG402857	ENTPD5	chr14	74431183	+	ENTPD5	chr14	74431152	-
intron-intron	ENST00000519824	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519824	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522746	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000523509	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000401979	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519110	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522250	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000517654	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000519540	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000522941	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000519824		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000522746		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000523509		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000401979		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000519110		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000522250		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000517654		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000519540		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000522941		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-intron	ENST00000518879	ENST00000518879		ChiTaRS3.1			AB062477	FAM49B	chr8	130890221	+	FAM49B	chr8	130890170	-
intron-5UTR	ENST00000494188	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000494188	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409892	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409784	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000398529	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409751	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000260638	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000505658		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000393227		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000311571		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000240304		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000544170		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000356214	ENST00000503798		ChiTaRS3.1			BE276057	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000544840	ENST00000367433		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000544840	ENST00000498426		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000544840	ENST00000367431		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000544840	ENST00000609185		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000544840	ENST00000451324		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000544840	ENST00000294725		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000367433		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000498426		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000367431		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000609185		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000451324		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000434554	ENST00000294725		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000367433		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000498426		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000367431		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000609185		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000451324		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
3UTR-intron	ENST00000225573	ENST00000294725		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000367433		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000498426		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000367431		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000609185		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000451324		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-intron	ENST00000534893	ENST00000294725		ChiTaRS3.1			BU741757	PNPO	chr17	46025272	-	KCNT2	chr1	196441331	+
intron-3CDS	ENST00000359895	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000359895	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000359895	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000359895	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000359895	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000359895	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000356618	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000356618	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000356618	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000356618	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000356618	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000356618	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355841	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355841	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355841	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355841	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355841	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355841	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000505746	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000505746	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000505746	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000505746	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000505746	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000505746	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000393551	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000393551	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000393551	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000393551	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000393551	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000393551	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355572	ENST00000359895		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355572	ENST00000356618		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-3CDS	ENST00000355572	ENST00000355841		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355572	ENST00000505746		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355572	ENST00000393551		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000355572	ENST00000355572		ChiTaRS3.1			AW028807	PDLIM7	chr5	176918963	+	PDLIM7	chr5	176916447	-
intron-intron	ENST00000260327	ENST00000260327		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000396780		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558966		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558373		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000561189		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000260327		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000396780		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558966		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558373		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000561189		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000260327		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000396780		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558966		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558373		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000561189		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000260327		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000396780		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558966		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558373		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000561189		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000260327		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000396780		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558966		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558373		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000561189		ChiTaRS3.1			AI032597	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000448741	ENST00000399262		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000448741	ENST00000402544		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000448741	ENST00000399251		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000448741	ENST00000542921		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000448741	ENST00000489372		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000607197	ENST00000399262		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000607197	ENST00000402544		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000607197	ENST00000399251		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000607197	ENST00000542921		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000607197	ENST00000489372		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000367697	ENST00000399262		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000367697	ENST00000402544		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000367697	ENST00000399251		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000367697	ENST00000542921		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-intron	ENST00000367697	ENST00000489372		ChiTaRS3.1			BM968067	HEBP2	chr6	138733861	-	JMJD1C	chr10	65043429	+
intron-3CDS	ENST00000313368	ENST00000313368		ChiTaRS3.1			BG015697	TAF7	chr5	140699230	+	TAF7	chr5	140699364	-
intron-intron	ENST00000368090	ENST00000535628		ChiTaRS3.1			BE843437	PIGM	chr1	160000558	-	ZBTB7C	chr18	45853369	-
intron-intron	ENST00000368090	ENST00000588982		ChiTaRS3.1			BE843437	PIGM	chr1	160000558	-	ZBTB7C	chr18	45853369	-
intron-intron	ENST00000368090	ENST00000586438		ChiTaRS3.1			BE843437	PIGM	chr1	160000558	-	ZBTB7C	chr18	45853369	-
intron-intron	ENST00000368090	ENST00000590800		ChiTaRS3.1			BE843437	PIGM	chr1	160000558	-	ZBTB7C	chr18	45853369	-
intron-intron	ENST00000368090	ENST00000332053		ChiTaRS3.1			BE843437	PIGM	chr1	160000558	-	ZBTB7C	chr18	45853369	-
3UTR-5UTR	ENST00000373253	ENST00000233143		ChiTaRS3.1			M79087	NCDN	chr1	36031945	-	TMSB10	chr2	85132788	+
3UTR-5UTR	ENST00000356090	ENST00000233143		ChiTaRS3.1			M79087	NCDN	chr1	36031945	-	TMSB10	chr2	85132788	+
3UTR-5UTR	ENST00000373243	ENST00000233143		ChiTaRS3.1			M79087	NCDN	chr1	36031945	-	TMSB10	chr2	85132788	+
intron-5UTR	ENST00000459931	ENST00000233143		ChiTaRS3.1			M79087	NCDN	chr1	36031945	-	TMSB10	chr2	85132788	+
intron-3UTR	ENST00000263409	ENST00000432648		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000263409	ENST00000446189		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000263409	ENST00000372984		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000453190	ENST00000432648		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000453190	ENST00000446189		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000453190	ENST00000372984		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000503088	ENST00000432648		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000503088	ENST00000446189		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-3UTR	ENST00000503088	ENST00000372984		ChiTaRS3.1			BE173377	LIFR	chr5	38478232	+	AKIRIN1	chr1	39469968	+
intron-intron	ENST00000450554	ENST00000450554		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000450554	ENST00000308924		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000450554	ENST00000590551		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000308924	ENST00000450554		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000308924	ENST00000308924		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000308924	ENST00000590551		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000590551	ENST00000450554		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000590551	ENST00000308924		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000590551	ENST00000590551		ChiTaRS3.1			CA314707	U2AF2	chr19	56173135	-	U2AF2	chr19	56173351	+
intron-intron	ENST00000294599	ENST00000444739		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
intron-intron	ENST00000294599	ENST00000393150		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
intron-intron	ENST00000294599	ENST00000531333		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
intron-intron	ENST00000356575	ENST00000444739		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
intron-intron	ENST00000356575	ENST00000393150		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
intron-intron	ENST00000356575	ENST00000531333		ChiTaRS3.1			DA572637	MEGF6	chr1	3522252	+	CASP4	chr11	104815111	-
3UTR-intron	ENST00000421743	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000421743	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000421743	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000421743	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367909	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367909	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367909	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367909	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000531057	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000531057	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000531057	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000531057	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000527809	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000527809	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000527809	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000527809	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367908	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367908	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367908	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000367908	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000491263	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000491263	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000491263	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
3UTR-intron	ENST00000491263	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000367906	ENST00000537971		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000367906	ENST00000011898		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000367906	ENST00000407263		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-intron	ENST00000367906	ENST00000492305		ChiTaRS3.1			BC000737	RGS4	chr1	163045446	+	TSPAN9	chr12	3320832	-
intron-3CDS	ENST00000336868	ENST00000336868		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000336868	ENST00000577098		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000336868	ENST00000575801		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000336868	ENST00000538650		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000336868	ENST00000537628		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-3CDS	ENST00000577098	ENST00000336868		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000577098	ENST00000577098		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000577098	ENST00000575801		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000577098	ENST00000538650		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000577098	ENST00000537628		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-3CDS	ENST00000575801	ENST00000336868		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000575801	ENST00000577098		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000575801	ENST00000575801		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000575801	ENST00000538650		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000575801	ENST00000537628		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-3CDS	ENST00000538650	ENST00000336868		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000538650	ENST00000577098		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000538650	ENST00000575801		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000538650	ENST00000538650		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000538650	ENST00000537628		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-3CDS	ENST00000537628	ENST00000336868		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000537628	ENST00000577098		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000537628	ENST00000575801		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000537628	ENST00000538650		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
intron-intron	ENST00000537628	ENST00000537628		ChiTaRS3.1			BE062257	NXN	chr17	704321	-	NXN	chr17	708327	-
3UTR-3CDS	ENST00000263645	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
3UTR-3CDS	ENST00000263645	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
3UTR-intron	ENST00000263645	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000492627	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000492627	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-intron	ENST00000492627	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000381036	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000381036	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-intron	ENST00000381036	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
3UTR-3CDS	ENST00000526072	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
3UTR-3CDS	ENST00000526072	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
3UTR-intron	ENST00000526072	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000524805	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000524805	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-intron	ENST00000524805	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000481687	ENST00000331923		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-3CDS	ENST00000481687	ENST00000290178		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-intron	ENST00000481687	ENST00000472588		ChiTaRS3.1			DB337047	CD81	chr11	2418426	-	PAXBP1	chr21	34115582	+
intron-intron	ENST00000522695	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522695	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524300	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000523558	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521210	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000355780	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000519961	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521727	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521451	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522509	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000517542	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000524104	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000522962	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000522695		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000524300		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000523558		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000521210		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000355780		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000519961		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000521727		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000521451		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000522509		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000517542		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000524104		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000522962		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
intron-intron	ENST00000521419	ENST00000521419		ChiTaRS3.1			BQ082467	STAU2	chr8	74648036	-	STAU2	chr8	74651329	-
5CDS-intron	ENST00000053867	ENST00000586702		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
5CDS-intron	ENST00000053867	ENST00000294618		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
5CDS-intron	ENST00000053867	ENST00000319867		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
5CDS-intron	ENST00000589265	ENST00000586702		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
5CDS-intron	ENST00000589265	ENST00000294618		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
5CDS-intron	ENST00000589265	ENST00000319867		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
intron-intron	ENST00000589923	ENST00000586702		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
intron-intron	ENST00000589923	ENST00000294618		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
intron-intron	ENST00000589923	ENST00000319867		ChiTaRS3.1			BG945987	GRN	chr17	42427666	+	DOCK6	chr19	11333470	-
intron-intron	ENST00000586783	ENST00000435504		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000586783	ENST00000336112		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000586783	ENST00000272341		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000586783	ENST00000404843		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000586783	ENST00000497092		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000454313	ENST00000435504		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000454313	ENST00000336112		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000454313	ENST00000272341		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000454313	ENST00000404843		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000454313	ENST00000497092		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000346736	ENST00000435504		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000346736	ENST00000336112		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000346736	ENST00000272341		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000346736	ENST00000404843		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000346736	ENST00000497092		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000591586	ENST00000435504		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000591586	ENST00000336112		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000591586	ENST00000272341		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000591586	ENST00000404843		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-intron	ENST00000591586	ENST00000497092		ChiTaRS3.1			AK172757	C19orf57	chr19	14012708	+	ASXL2	chr2	25971264	-
intron-3CDS	ENST00000401695	ENST00000395474		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000401695	ENST00000489684		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000401695	ENST00000608424		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000401695	ENST00000415265		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000401695	ENST00000448293		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-3CDS	ENST00000407193	ENST00000395474		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000407193	ENST00000489684		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000407193	ENST00000608424		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000407193	ENST00000415265		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000407193	ENST00000448293		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-3CDS	ENST00000312037	ENST00000395474		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000312037	ENST00000489684		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000312037	ENST00000608424		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000312037	ENST00000415265		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-intron	ENST00000312037	ENST00000448293		ChiTaRS3.1			BM680717	RPS14	chr5	149823906	+	WDR6	chr3	49050987	-
intron-3CDS	ENST00000314100	ENST00000314100		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000481247		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000419706		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000408958		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000314100	ENST00000403056		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000314100		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000481247		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000419706		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000408958		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000481247	ENST00000403056		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000314100		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000481247		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000419706		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000408958		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000419706	ENST00000403056		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000314100		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000481247		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000419706		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000408958		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000408958	ENST00000403056		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000314100		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000481247		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000419706		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000408958		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
intron-3CDS	ENST00000403056	ENST00000403056		ChiTaRS3.1			F13287	BTBD9	chr6	38224272	-	BTBD9	chr6	38142931	+
5CDS-intron	ENST00000328252	ENST00000269485		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
5CDS-intron	ENST00000328252	ENST00000586569		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
intron-intron	ENST00000534838	ENST00000269485		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
intron-intron	ENST00000534838	ENST00000586569		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
intron-intron	ENST00000483254	ENST00000269485		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
intron-intron	ENST00000483254	ENST00000586569		ChiTaRS3.1			R32087	PAPPA	chr9	118949730	+	TNFRSF11A	chr18	59998198	-
5CDS-3UTR	ENST00000530758	ENST00000266077		ChiTaRS3.1			BC013687	BRK1	chr3	10167355	-	SLC2A4RG	chr20	62374830	+
5CDS-3UTR	ENST00000530758	ENST00000493772		ChiTaRS3.1			BC013687	BRK1	chr3	10167355	-	SLC2A4RG	chr20	62374830	+
5CDS-3UTR	ENST00000256463	ENST00000266077		ChiTaRS3.1			BC013687	BRK1	chr3	10167355	-	SLC2A4RG	chr20	62374830	+
5CDS-3UTR	ENST00000256463	ENST00000493772		ChiTaRS3.1			BC013687	BRK1	chr3	10167355	-	SLC2A4RG	chr20	62374830	+
3UTR-3UTR	ENST00000395246	ENST00000395246		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000395246	ENST00000504701		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000395246	ENST00000503291		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000395246	ENST00000360515		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000395246	ENST00000505065		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000395246		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000504701	ENST00000504701		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000504701	ENST00000503291		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000360515		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000504701	ENST00000505065		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000395246		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000503291	ENST00000504701		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000503291	ENST00000503291		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000360515		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-3UTR	ENST00000503291	ENST00000505065		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000395246		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000360515	ENST00000504701		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000360515	ENST00000503291		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000360515		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000360515	ENST00000505065		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000395246		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000505065	ENST00000504701		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-intron	ENST00000505065	ENST00000503291		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000360515		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
3UTR-3UTR	ENST00000505065	ENST00000505065		ChiTaRS3.1			BU680197	CDC42SE2	chr5	130729944	-	CDC42SE2	chr5	130729808	+
intron-intron	ENST00000467100	ENST00000467100		ChiTaRS3.1			BE929907	FUBP3	chr9	133501835	-	FUBP3	chr9	133470922	+
intron-intron	ENST00000467100	ENST00000319725		ChiTaRS3.1			BE929907	FUBP3	chr9	133501835	-	FUBP3	chr9	133470922	+
5CDS-intron	ENST00000319725	ENST00000467100		ChiTaRS3.1			BE929907	FUBP3	chr9	133501835	-	FUBP3	chr9	133470922	+
5CDS-intron	ENST00000319725	ENST00000319725		ChiTaRS3.1			BE929907	FUBP3	chr9	133501835	-	FUBP3	chr9	133470922	+
intron-intron	ENST00000563763	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000563763	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000563763	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000563763	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574946	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574946	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574946	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574946	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000573634	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000573634	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000573634	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000573634	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000317744	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000317744	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000317744	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000317744	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574232	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574232	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574232	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000574232	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000539421	ENST00000517309		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000539421	ENST00000455950		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000539421	ENST00000518776		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000539421	ENST00000522072		ChiTaRS3.1			AL589407	WSCD1	chr17	6002468	+	PTDSS1	chr8	97315086	+
intron-intron	ENST00000361205	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000361205	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000361205	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000361205	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000399848	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000399848	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000399848	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000399848	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000359446	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000359446	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000359446	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000359446	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000587757	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000587757	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000587757	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000587757	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000585931	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000585931	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000585931	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000585931	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000586765	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000586765	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000586765	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000586765	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000590308	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000590308	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000590308	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000590308	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000592991	ENST00000522208		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000592991	ENST00000521389		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000592991	ENST00000261947		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-intron	ENST00000592991	ENST00000520564		ChiTaRS3.1			BY798617	LDLRAD4	chr18	13238627	+	RNF130	chr5	179384055	-
intron-3CDS	ENST00000428715	ENST00000428715		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000428715	ENST00000487727		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000428715	ENST00000302481		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-3CDS	ENST00000487727	ENST00000428715		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000487727	ENST00000487727		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000487727	ENST00000302481		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-3CDS	ENST00000302481	ENST00000428715		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000302481	ENST00000487727		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000302481	ENST00000302481		ChiTaRS3.1			BM712917	HMCN2	chr9	133308557	-	HMCN2	chr9	133308889	+
intron-intron	ENST00000396024	ENST00000396024		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000451270		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000332680		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000421017		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000396024	ENST00000557937		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000396024		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000451270		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000332680		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000421017		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000451270	ENST00000557937		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000396024		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000451270		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000332680		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000421017		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000332680	ENST00000557937		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000396024		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000451270		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000332680		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000421017		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000421017	ENST00000557937		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000396024		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000451270		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000332680		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000421017		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000557937	ENST00000557937		ChiTaRS3.1			BE934277	ANXA2	chr15	60647932	+	ANXA2	chr15	60649529	-
intron-intron	ENST00000540900	ENST00000597563		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000540900	ENST00000426973		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000540900	ENST00000356109		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000540900	ENST00000355684		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000584423	ENST00000597563		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000584423	ENST00000426973		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000584423	ENST00000356109		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000584423	ENST00000355684		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000247026	ENST00000597563		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000247026	ENST00000426973		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000247026	ENST00000356109		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000247026	ENST00000355684		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000479218	ENST00000597563		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000479218	ENST00000426973		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000479218	ENST00000356109		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000479218	ENST00000355684		ChiTaRS3.1			AW842117	NSRP1	chr17	28445681	+	ZNF44	chr19	12396110	-
intron-intron	ENST00000314571	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000383797	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000454502	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000402228	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000444864	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000284995	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000415684	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000475595	ENST00000408442		ChiTaRS3.1			BF754357	TSEN2	chr3	12556985	+	MIR548G	chr3	99407680	-
intron-intron	ENST00000315266	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000315266	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000315266	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000315266	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000478722	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000478722	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000478722	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000478722	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000459628	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000459628	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000459628	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000459628	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000543237	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000543237	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000543237	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000543237	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000305960	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000305960	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000305960	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000305960	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000544752	ENST00000425441		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000544752	ENST00000292314		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000544752	ENST00000546280		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
intron-intron	ENST00000544752	ENST00000605358		ChiTaRS3.1			BX509307	GPHN	chr14	67102571	+	CCDC12	chr3	46982802	-
3UTR-3CDS	ENST00000270792	ENST00000346798		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000354192		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000348990		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000357903		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000358918		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000359726		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000448388		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000440126		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000270792	ENST00000439274		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-intron	ENST00000270792	ENST00000474136		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000346798		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000354192		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000348990		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000357903		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000358918		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000359726		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000448388		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000440126		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-3CDS	ENST00000319041	ENST00000439274		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
3UTR-intron	ENST00000319041	ENST00000474136		ChiTaRS3.1			CD369777	SH3BGRL3	chr1	26607757	-	APP	chr21	27326946	+
intron-3UTR	ENST00000540582	ENST00000368985		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000540582	ENST00000448301		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-intron	ENST00000540582	ENST00000480760		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000374491	ENST00000368985		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000374491	ENST00000448301		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-intron	ENST00000374491	ENST00000480760		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000374492	ENST00000368985		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000374492	ENST00000448301		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-intron	ENST00000374492	ENST00000480760		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000541621	ENST00000368985		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000541621	ENST00000448301		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-intron	ENST00000541621	ENST00000480760		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000542871	ENST00000368985		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-3UTR	ENST00000542871	ENST00000448301		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
intron-intron	ENST00000542871	ENST00000480760		ChiTaRS3.1			BQ015907	EDEM2	chr20	33856566	+	CTSS	chr1	150705384	+
5UTR-intron	ENST00000318561	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000521315	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000437090	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000520605	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000522109	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000524255	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-intron	ENST00000522880	ENST00000271636		ChiTaRS3.1			BF845787	SFTPC	chr8	22019309	-	CGN	chr1	151497469	+
intron-3UTR	ENST00000355621	ENST00000355621		ChiTaRS3.1			BF839267	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-intron	ENST00000355621	ENST00000473814		ChiTaRS3.1			BF839267	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-3UTR	ENST00000473814	ENST00000355621		ChiTaRS3.1			BF839267	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-intron	ENST00000473814	ENST00000473814		ChiTaRS3.1			BF839267	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-intron	ENST00000521689	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000521689	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000521689	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000521689	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000521689	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000254898	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000254898	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000254898	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000254898	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000254898	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000524308	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000524308	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000524308	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000524308	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000524308	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000522025	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000522025	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000522025	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000522025	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000522025	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000520016	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000520016	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000520016	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000520016	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000520016	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000518238	ENST00000531066		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000518238	ENST00000355661		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000518238	ENST00000448080		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000518238	ENST00000532079		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000518238	ENST00000332954		ChiTaRS3.1			BF832657	MATN2	chr8	98991113	-	PLEKHA7	chr11	16815715	+
intron-intron	ENST00000445552	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000445552	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000337845	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000329240	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000573185	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000570550	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000336125	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549904	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000550273	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000549665	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000445552		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000337845		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000329240		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000573185		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000570550		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000336125		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000549904		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000550273		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000549665		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-intron	ENST00000553155	ENST00000553155		ChiTaRS3.1			BF934957	ARL17A	chr17	486635	-	ARL17A	chr17	486590	+
intron-3CDS	ENST00000318238	ENST00000352511		ChiTaRS3.1			BE069037	SAMD9L	chr7	92766155	+	ACVR2B	chr3	38521173	+
intron-3CDS	ENST00000411955	ENST00000352511		ChiTaRS3.1			BE069037	SAMD9L	chr7	92766155	+	ACVR2B	chr3	38521173	+
intron-3CDS	ENST00000437805	ENST00000352511		ChiTaRS3.1			BE069037	SAMD9L	chr7	92766155	+	ACVR2B	chr3	38521173	+
intron-3CDS	ENST00000477816	ENST00000352511		ChiTaRS3.1			BE069037	SAMD9L	chr7	92766155	+	ACVR2B	chr3	38521173	+
intron-intron	ENST00000397817	ENST00000354989		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000360031		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000376652		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000433259		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000485936		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000354989		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000360031		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000376652		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000433259		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000485936		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000354989		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000360031		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000376652		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000433259		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000485936		ChiTaRS3.1			EL583107	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000524419	ENST00000524419		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000524419	ENST00000528989		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000524419	ENST00000315571		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000524419	ENST00000529759		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000528989	ENST00000524419		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000528989	ENST00000528989		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000528989	ENST00000315571		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000528989	ENST00000529759		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000315571	ENST00000524419		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000315571	ENST00000528989		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000315571	ENST00000315571		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000315571	ENST00000529759		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000529759	ENST00000524419		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000529759	ENST00000528989		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000529759	ENST00000315571		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-intron	ENST00000529759	ENST00000529759		ChiTaRS3.1			BF893987	LDLRAD3	chr11	36091689	+	LDLRAD3	chr11	36091436	-
intron-5UTR	ENST00000400590	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000320220	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000382466	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000542645	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000415724	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000422251	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-5UTR	ENST00000494731	ENST00000335295		ChiTaRS3.1			AI133247	ZDHHC20	chr13	21950021	+	HBB	chr11	5248259	-
intron-intron	ENST00000336665	ENST00000406386		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000336665	ENST00000407319		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000336665	ENST00000403663		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000406386		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000407319		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000403663		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000406386		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000407319		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000403663		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000406386		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000407319		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000403663		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000406386		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000407319		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000403663		ChiTaRS3.1			BF815807	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000468758	ENST00000468758		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-3UTR	ENST00000468758	ENST00000409645		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-intron	ENST00000468758	ENST00000281923		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
3UTR-intron	ENST00000409645	ENST00000468758		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
3UTR-3UTR	ENST00000409645	ENST00000409645		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
3UTR-intron	ENST00000409645	ENST00000281923		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-intron	ENST00000281923	ENST00000468758		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-3UTR	ENST00000281923	ENST00000409645		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-intron	ENST00000281923	ENST00000281923		ChiTaRS3.1			BX647087	MGAT5	chr2	135207140	-	MGAT5	chr2	135206960	+
intron-intron	ENST00000282050	ENST00000005260		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000282050	ENST00000462558		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000593152	ENST00000005260		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000593152	ENST00000462558		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000590665	ENST00000005260		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000590665	ENST00000462558		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000398752	ENST00000005260		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000398752	ENST00000462558		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000591267	ENST00000005260		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000591267	ENST00000462558		ChiTaRS3.1			BC007607	ATP5A1	chr18	43678239	+	BAIAP2L1	chr7	98015908	-
5CDS-intron	ENST00000413272	ENST00000413272		ChiTaRS3.1			AA927797	NUGGC	chr8	27931886	+	NUGGC	chr8	27918402	+
5CDS-intron	ENST00000413272	ENST00000341513		ChiTaRS3.1			AA927797	NUGGC	chr8	27931886	+	NUGGC	chr8	27918402	+
5CDS-intron	ENST00000341513	ENST00000413272		ChiTaRS3.1			AA927797	NUGGC	chr8	27931886	+	NUGGC	chr8	27918402	+
5CDS-intron	ENST00000341513	ENST00000341513		ChiTaRS3.1			AA927797	NUGGC	chr8	27931886	+	NUGGC	chr8	27918402	+
intron-intron	ENST00000372978	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000372978	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000494547	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000456846	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000372982	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000472818	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-3UTR	ENST00000372977	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000482926	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000465926	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000372978		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000494547		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000456846		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000372982		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000472818		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000482432	ENST00000372977		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000482926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000465926		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000482432		ChiTaRS3.1			AI659647	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-3CDS	ENST00000266517	ENST00000266517		ChiTaRS3.1			CB306777	ETNK1	chr12	22837943	-	ETNK1	chr12	22837424	+
3UTR-intron	ENST00000266517	ENST00000335148		ChiTaRS3.1			CB306777	ETNK1	chr12	22837943	-	ETNK1	chr12	22837424	+
intron-3CDS	ENST00000335148	ENST00000266517		ChiTaRS3.1			CB306777	ETNK1	chr12	22837943	-	ETNK1	chr12	22837424	+
intron-intron	ENST00000335148	ENST00000335148		ChiTaRS3.1			CB306777	ETNK1	chr12	22837943	-	ETNK1	chr12	22837424	+
intron-intron	ENST00000356388	ENST00000356388		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000356388	ENST00000443619		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000356388	ENST00000474228		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000443619	ENST00000356388		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000443619	ENST00000443619		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000443619	ENST00000474228		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000474228	ENST00000356388		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000474228	ENST00000443619		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
intron-intron	ENST00000474228	ENST00000474228		ChiTaRS3.1			AW579707	SPRED2	chr2	65628129	+	SPRED2	chr2	65630442	-
3UTR-3CDS	ENST00000602662	ENST00000296503		ChiTaRS3.1			BG924337	MINOS1-NBL1	chr1	19984318	+	HMGB2	chr4	174253288	-
3UTR-3CDS	ENST00000602662	ENST00000438704		ChiTaRS3.1			BG924337	MINOS1-NBL1	chr1	19984318	+	HMGB2	chr4	174253288	-
3UTR-3CDS	ENST00000602662	ENST00000446922		ChiTaRS3.1			BG924337	MINOS1-NBL1	chr1	19984318	+	HMGB2	chr4	174253288	-
3UTR-3UTR	ENST00000394885	ENST00000394885		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000394885	ENST00000320963		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000394885	ENST00000394883		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000320963	ENST00000394885		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000320963	ENST00000320963		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000320963	ENST00000394883		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000394883	ENST00000394885		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000394883	ENST00000320963		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
3UTR-3UTR	ENST00000394883	ENST00000394883		ChiTaRS3.1			CN422557	RCN2	chr15	77241644	-	RCN2	chr15	77241671	+
intron-intron	ENST00000273038	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000273038	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000273038	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000273038	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000430365	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000430365	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000430365	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000430365	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000404339	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000404339	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000404339	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000404339	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000480288	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000480288	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000480288	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000480288	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000413604	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000413604	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000413604	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000413604	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000451674	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000451674	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000451674	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000451674	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000424529	ENST00000446450		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000424529	ENST00000354956		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000424529	ENST00000354449		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
intron-intron	ENST00000424529	ENST00000469654		ChiTaRS3.1			AA715117	VGLL4	chr3	11600137	+	ATG7	chr3	11600199	-
5CDS-3UTR	ENST00000246554	ENST00000558401		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000246554	ENST00000559916		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000246554	ENST00000544417		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000246554	ENST00000559220		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000592141	ENST00000558401		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000592141	ENST00000559916		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000592141	ENST00000544417		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000592141	ENST00000559220		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000392201	ENST00000558401		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000392201	ENST00000559916		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000392201	ENST00000544417		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000392201	ENST00000559220		ChiTaRS3.1			CA776837	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
intron-intron	ENST00000238571	ENST00000238571		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000238571	ENST00000325680		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000238571	ENST00000552421		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000238571	ENST00000546901		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000325680	ENST00000238571		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000325680	ENST00000325680		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000325680	ENST00000552421		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000325680	ENST00000546901		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000552421	ENST00000238571		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000552421	ENST00000325680		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000552421	ENST00000552421		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
3UTR-intron	ENST00000552421	ENST00000546901		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000546901	ENST00000238571		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000546901	ENST00000325680		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000546901	ENST00000552421		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
intron-intron	ENST00000546901	ENST00000546901		ChiTaRS3.1			AA420467	YLPM1	chr14	75302143	+	YLPM1	chr14	75301993	-
In-frame	ENST00000238571	ENST00000238571		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
In-frame	ENST00000238571	ENST00000325680		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
5CDS-intron	ENST00000238571	ENST00000552421		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
5CDS-intron	ENST00000238571	ENST00000546901		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
In-frame	ENST00000325680	ENST00000238571		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
In-frame	ENST00000325680	ENST00000325680		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
5CDS-intron	ENST00000325680	ENST00000552421		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
5CDS-intron	ENST00000325680	ENST00000546901		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-3CDS	ENST00000552421	ENST00000238571		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-3CDS	ENST00000552421	ENST00000325680		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-intron	ENST00000552421	ENST00000552421		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-intron	ENST00000552421	ENST00000546901		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-3CDS	ENST00000546901	ENST00000238571		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-3CDS	ENST00000546901	ENST00000325680		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-intron	ENST00000546901	ENST00000552421		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-intron	ENST00000546901	ENST00000546901		ChiTaRS3.1			AW387287	YLPM1	chr14	75264876	+	YLPM1	chr14	75265077	-
intron-intron	ENST00000369516	ENST00000309446		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369516	ENST00000421199		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369516	ENST00000423015		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369516	ENST00000458272		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369516	ENST00000412414		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369516	ENST00000467833		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000309446		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000421199		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000423015		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000458272		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000412414		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369515	ENST00000467833		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000309446		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000421199		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000423015		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000458272		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000412414		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000369514	ENST00000467833		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000309446		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000421199		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000423015		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000458272		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000412414		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
intron-intron	ENST00000491992	ENST00000467833		ChiTaRS3.1			BF359767	TSPAN2	chr1	115592798	+	KLF7	chr2	207969775	+
In-frame	ENST00000369983	ENST00000369983		ChiTaRS3.1			BQ354177	GBF1	chr10	104119979	-	GBF1	chr10	104117846	+
5CDS-intron	ENST00000369983	ENST00000476019		ChiTaRS3.1			BQ354177	GBF1	chr10	104119979	-	GBF1	chr10	104117846	+
intron-3CDS	ENST00000476019	ENST00000369983		ChiTaRS3.1			BQ354177	GBF1	chr10	104119979	-	GBF1	chr10	104117846	+
intron-intron	ENST00000476019	ENST00000476019		ChiTaRS3.1			BQ354177	GBF1	chr10	104119979	-	GBF1	chr10	104117846	+
intron-intron	ENST00000053468	ENST00000397109		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000053468	ENST00000337354		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000053468	ENST00000350697		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000053468	ENST00000397117		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000053468	ENST00000383801		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000053468	ENST00000492602		ChiTaRS3.1			BG256737	MRPS10	chr6	42175255	-	SEC13	chr3	10343668	-
intron-intron	ENST00000322147	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000322147	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000322147	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000322147	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000322147	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000301873	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000301873	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000301873	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000301873	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000301873	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000530785	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000530785	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000530785	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000530785	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000530785	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000529189	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000529189	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000529189	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000529189	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000529189	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000532932	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000532932	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000532932	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000532932	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000532932	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000536982	ENST00000438911		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000536982	ENST00000530374		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000536982	ENST00000403000		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000536982	ENST00000424149		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-3UTR	ENST00000536982	ENST00000306145		ChiTaRS3.1			BF930907	LTBP3	chr11	65308609	+	CYHR1	chr8	145689408	+
intron-intron	ENST00000394936	ENST00000370225		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394936	ENST00000535881		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394936	ENST00000536513		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394936	ENST00000465352		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394936	ENST00000535735		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394934	ENST00000370225		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394934	ENST00000535881		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394934	ENST00000536513		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394934	ENST00000465352		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
intron-intron	ENST00000394934	ENST00000535735		ChiTaRS3.1			AA019217	PSAP	chr10	73576194	+	ABCA4	chr1	94492841	+
5CDS-intron	ENST00000291576	ENST00000361339		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
5CDS-intron	ENST00000291576	ENST00000426508		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
5CDS-5UTR	ENST00000291576	ENST00000439987		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
intron-intron	ENST00000494310	ENST00000361339		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
intron-intron	ENST00000494310	ENST00000426508		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
intron-5UTR	ENST00000494310	ENST00000439987		ChiTaRS3.1			DB341397	PWP2	chr21	45550648	-	IFT140	chr16	1618303	+
3UTR-3UTR	ENST00000261023	ENST00000261023		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-3UTR	ENST00000261023	ENST00000374907		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-intron	ENST00000261023	ENST00000433736		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-intron	ENST00000261023	ENST00000474571		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-3UTR	ENST00000374907	ENST00000261023		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-3UTR	ENST00000374907	ENST00000374907		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-intron	ENST00000374907	ENST00000433736		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
3UTR-intron	ENST00000374907	ENST00000474571		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-3UTR	ENST00000433736	ENST00000261023		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-3UTR	ENST00000433736	ENST00000374907		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-intron	ENST00000433736	ENST00000433736		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-intron	ENST00000433736	ENST00000474571		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-3UTR	ENST00000474571	ENST00000261023		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-3UTR	ENST00000474571	ENST00000374907		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-intron	ENST00000474571	ENST00000433736		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-intron	ENST00000474571	ENST00000474571		ChiTaRS3.1			BF981617	ITGAV	chr2	187544884	-	ITGAV	chr2	187544917	+
intron-3CDS	ENST00000425534	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000425534	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000389826	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000389826	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000448225	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000448225	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000295612	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000295612	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000468147	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000468147	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000421769	ENST00000270879		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000421769	ENST00000354982		ChiTaRS3.1			D88587	EIF4E3	chr3	71731514	+	FCN3	chr1	27701313	-
intron-3CDS	ENST00000322723	ENST00000322723		ChiTaRS3.1			BQ302417	NCL	chr2	232326383	+	NCL	chr2	232320168	+
In-frame	ENST00000543117	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000543117	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000543117	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000543117	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000543117	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
5CDS-intron	ENST00000543117	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000265393	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000265393	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000265393	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000265393	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000265393	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
5CDS-intron	ENST00000265393	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000409980	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000409980	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000409980	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000409980	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000409980	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
5CDS-intron	ENST00000409980	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000433216	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000433216	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000433216	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000433216	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000433216	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
5CDS-intron	ENST00000433216	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000396319	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000396319	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000396319	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
Frame-shit	ENST00000396319	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
In-frame	ENST00000396319	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
5CDS-intron	ENST00000396319	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-3CDS	ENST00000494033	ENST00000543117		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-3CDS	ENST00000494033	ENST00000265393		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-3CDS	ENST00000494033	ENST00000409980		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-3CDS	ENST00000494033	ENST00000433216		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-3CDS	ENST00000494033	ENST00000396319		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-intron	ENST00000494033	ENST00000494033		ChiTaRS3.1			BM806487	TAX1BP1	chr7	27868310	-	TAX1BP1	chr7	27868395	+
intron-intron	ENST00000434693	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000434693	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000434693	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000434693	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000434693	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000396583	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000396583	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000396583	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000396583	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000396583	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383767	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383767	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383767	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383767	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383767	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000445033	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000445033	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000445033	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000445033	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000445033	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000273139	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000273139	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000273139	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000273139	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000273139	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383766	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383766	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383766	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383766	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000383766	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000452462	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000452462	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000452462	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000452462	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000452462	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000456853	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000456853	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000456853	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000456853	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000456853	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000473799	ENST00000464233		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000473799	ENST00000436010		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000473799	ENST00000495273		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000473799	ENST00000467549		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-intron	ENST00000473799	ENST00000466906		ChiTaRS3.1			AA298937	RBMS3	chr3	29752217	-	ROBO1	chr3	78889375	+
intron-3CDS	ENST00000374866	ENST00000544301		ChiTaRS3.1			BG876887	COL5A2	chr2	189897473	-	VIM	chr10	17277284	-
intron-3CDS	ENST00000374866	ENST00000224237		ChiTaRS3.1			BG876887	COL5A2	chr2	189897473	-	VIM	chr10	17277284	-
intron-intron	ENST00000374866	ENST00000485947		ChiTaRS3.1			BG876887	COL5A2	chr2	189897473	-	VIM	chr10	17277284	-
intron-intron	ENST00000316403	ENST00000316403		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000316403	ENST00000546343		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000316403	ENST00000560366		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000316403	ENST00000405140		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000316403	ENST00000523500		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000546343	ENST00000316403		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000546343	ENST00000546343		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000546343	ENST00000560366		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000546343	ENST00000405140		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000546343	ENST00000523500		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000560366	ENST00000316403		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000560366	ENST00000546343		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000560366	ENST00000560366		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000560366	ENST00000405140		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000560366	ENST00000523500		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000405140	ENST00000316403		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000405140	ENST00000546343		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000405140	ENST00000560366		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000405140	ENST00000405140		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000405140	ENST00000523500		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000523500	ENST00000316403		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000523500	ENST00000546343		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-intron	ENST00000523500	ENST00000560366		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000523500	ENST00000405140		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-5UTR	ENST00000523500	ENST00000523500		ChiTaRS3.1			BP348657	CLU	chr8	27457324	-	CLU	chr8	27468826	-
intron-3UTR	ENST00000397239	ENST00000397239		ChiTaRS3.1			BF034427	DEK	chr6	18224734	+	DEK	chr6	18224836	-
intron-intron	ENST00000397239	ENST00000244776		ChiTaRS3.1			BF034427	DEK	chr6	18224734	+	DEK	chr6	18224836	-
intron-3UTR	ENST00000244776	ENST00000397239		ChiTaRS3.1			BF034427	DEK	chr6	18224734	+	DEK	chr6	18224836	-
intron-intron	ENST00000244776	ENST00000244776		ChiTaRS3.1			BF034427	DEK	chr6	18224734	+	DEK	chr6	18224836	-
intron-intron	ENST00000231061	ENST00000404479		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000231061	ENST00000318709		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000231061	ENST00000459629		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000231061	ENST00000409301		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000537849	ENST00000404479		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000537849	ENST00000318709		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000537849	ENST00000459629		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000537849	ENST00000409301		ChiTaRS3.1			BQ369697	SPARC	chr5	151041961	+	AVL9	chr7	33035810	-
intron-intron	ENST00000253251	ENST00000450966		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000253251	ENST00000251722		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000253251	ENST00000427112		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000253251	ENST00000496298		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000253251	ENST00000409945		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000253251	ENST00000443711		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000450966		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000251722		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000427112		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000496298		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000409945		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377157	ENST00000443711		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000450966		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000251722		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000427112		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000496298		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000409945		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000343090	ENST00000443711		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000450966		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000251722		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000427112		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000496298		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000409945		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000377153	ENST00000443711		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000450966		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000251722		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000427112		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000496298		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000409945		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000475795	ENST00000443711		ChiTaRS3.1			N25507	UBE4B	chr1	10123425	+	USP40	chr2	234397293	-
intron-intron	ENST00000448662	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000448662	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000448662	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000448662	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000431808	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000431808	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000431808	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000431808	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000284776	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000284776	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000284776	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000284776	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000437304	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000437304	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000437304	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000437304	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000319471	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000319471	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000319471	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000319471	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000449407	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000449407	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000449407	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000449407	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000355634	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000355634	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000355634	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000355634	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000393528	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000393528	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000393528	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000393528	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000418609	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000418609	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000418609	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000418609	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000498125	ENST00000315183		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000498125	ENST00000562829		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000498125	ENST00000395799		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
intron-intron	ENST00000498125	ENST00000432286		ChiTaRS3.1			AK025277	SORBS2	chr4	186610266	-	TNRC6A	chr16	24828954	+
3UTR-3UTR	ENST00000409556	ENST00000297323		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-intron	ENST00000409556	ENST00000432715		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-3UTR	ENST00000312912	ENST00000297323		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-intron	ENST00000312912	ENST00000432715		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-3UTR	ENST00000409064	ENST00000297323		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-intron	ENST00000409064	ENST00000432715		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-3UTR	ENST00000542128	ENST00000297323		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
3UTR-intron	ENST00000542128	ENST00000432715		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
intron-3UTR	ENST00000485171	ENST00000297323		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
intron-intron	ENST00000485171	ENST00000432715		ChiTaRS3.1			BM668617	KDM3A	chr2	86719270	-	ADCY1	chr7	45754880	-
intron-intron	ENST00000371497	ENST00000371497		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000371497	ENST00000603338		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000371497	ENST00000329613		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000371497		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000603338		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000603338	ENST00000329613		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000371497		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000603338		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000329613	ENST00000329613		ChiTaRS3.1			BE466097	TSHZ2	chr20	51759094	-	TSHZ2	chr20	51765912	-
intron-intron	ENST00000257177	ENST00000353364		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000257177	ENST00000280377		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000257177	ENST00000393654		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000257177	ENST00000550632		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000257177	ENST00000312635		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371544	ENST00000353364		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371544	ENST00000280377		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371544	ENST00000393654		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371544	ENST00000550632		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371544	ENST00000312635		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371541	ENST00000353364		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371541	ENST00000280377		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371541	ENST00000393654		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371541	ENST00000550632		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000371541	ENST00000312635		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000355809	ENST00000353364		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000355809	ENST00000280377		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000355809	ENST00000393654		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000355809	ENST00000550632		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000355809	ENST00000312635		ChiTaRS3.1			CV416217	ZCCHC11	chr1	52998806	+	USP15	chr12	62710170	+
intron-intron	ENST00000302538	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000302538	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000544583	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000572441	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000574437	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000291107	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000543210	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000536794	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000302538		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000544583		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000572441		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000574437		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000291107		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000543210		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000536794		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000573895	ENST00000573895		ChiTaRS3.1			BI046397	ABR	chr17	909278	+	ABR	chr17	909478	-
intron-intron	ENST00000438423	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000438423	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000438423	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000438423	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000267811	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000267811	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000267811	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000267811	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000452095	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000452095	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000452095	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000452095	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000333725	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000333725	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000333725	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000333725	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000557843	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000557843	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000557843	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000557843	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000560764	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000560764	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000560764	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000560764	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000543579	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000543579	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000543579	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000543579	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000537840	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000537840	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000537840	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000537840	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000343827	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000343827	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000343827	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000343827	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559710	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559710	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559710	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559710	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559703	ENST00000534358		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559703	ENST00000389506		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559703	ENST00000354520		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-intron	ENST00000559703	ENST00000420751		ChiTaRS3.1			JF938533	TCF12	chr15	57240648	+	KMT2A	chr11	118354792	+
intron-3UTR	ENST00000561294	ENST00000356978		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000561294	ENST00000447653		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000561294	ENST00000555132		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000561294	ENST00000553542		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000561294	ENST00000544280		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-3UTR	ENST00000345896	ENST00000356978		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000345896	ENST00000447653		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000345896	ENST00000555132		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000345896	ENST00000553542		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000345896	ENST00000544280		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-3UTR	ENST00000271688	ENST00000356978		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000271688	ENST00000447653		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000271688	ENST00000555132		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000271688	ENST00000553542		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000271688	ENST00000544280		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-3UTR	ENST00000368954	ENST00000356978		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000368954	ENST00000447653		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000368954	ENST00000555132		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000368954	ENST00000553542		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000368954	ENST00000544280		ChiTaRS3.1			AW502357	CERS2	chr1	150937974	+	CALM1	chr14	90872487	-
intron-intron	ENST00000393651	ENST00000393651		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000393651	ENST00000357311		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000393651	ENST00000489828		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000393651	ENST00000493638		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000357311	ENST00000393651		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000357311	ENST00000357311		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000357311	ENST00000489828		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000357311	ENST00000493638		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000489828	ENST00000393651		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000489828	ENST00000357311		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000489828	ENST00000489828		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000489828	ENST00000493638		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000493638	ENST00000393651		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000493638	ENST00000357311		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000493638	ENST00000489828		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-intron	ENST00000493638	ENST00000493638		ChiTaRS3.1			BF358657	SRPK2	chr7	104812783	+	SRPK2	chr7	104812850	-
intron-3UTR	ENST00000259486	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
intron-3UTR	ENST00000427067	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
intron-3UTR	ENST00000522167	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
intron-3UTR	ENST00000522826	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
intron-3UTR	ENST00000075322	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
intron-3UTR	ENST00000518109	ENST00000534336		ChiTaRS3.1			AI718737	ENPP2	chr8	120620382	+	MALAT1	chr11	65271001	+
3UTR-intron	ENST00000328024	ENST00000470422		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
3UTR-intron	ENST00000328024	ENST00000246043		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
3UTR-intron	ENST00000328024	ENST00000377813		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
3UTR-intron	ENST00000328024	ENST00000377807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
3UTR-intron	ENST00000328024	ENST00000360807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
3UTR-intron	ENST00000328024	ENST00000455029		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000470422		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000246043		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000377813		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000377807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000360807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000601897	ENST00000455029		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000470422		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000246043		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000377813		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000377807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000360807		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000594216	ENST00000455029		ChiTaRS3.1			AI051667	RAB11B	chr19	8468998	-	RRBP1	chr20	17621075	+
intron-intron	ENST00000532317	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000532317	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000532317	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000532317	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000532317	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000532317	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000526033	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000393346	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528398	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000356360	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000532317		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000526033		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000393346		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000528398		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000356360		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-intron	ENST00000528411	ENST00000528411		ChiTaRS3.1			BG389627	PICALM	chr11	85668577	+	PICALM	chr11	85668557	-
intron-3CDS	ENST00000268099	ENST00000343053		ChiTaRS3.1			BG743997	SCAMP2	chr15	75137895	+	NELFB	chr9	140160853	+
intron-intron	ENST00000540746	ENST00000218089		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000469481		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000354548		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000371160		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000371157		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000371145		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000540746	ENST00000371144		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000218089		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000469481		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000354548		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000371160		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000371157		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000371145		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000544216	ENST00000371144		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000218089		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000469481		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000354548		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000371160		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000371157		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000371145		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
intron-intron	ENST00000433627	ENST00000371144		ChiTaRS3.1			AW364737	LSM14A	chr19	34688617	-	STAG2	chrX	123153497	-
5CDS-3UTR	ENST00000310118	ENST00000392329		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000310118	ENST00000322522		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000310118	ENST00000541441		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000310118	ENST00000417336		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000392329		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000322522		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000541441		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000435761	ENST00000417336		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000392329		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000322522		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000541441		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000439383	ENST00000417336		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000392329		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000322522		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000541441		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-intron	ENST00000459910	ENST00000417336		ChiTaRS3.1			BE720207	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000396651	ENST00000369325		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000396651	ENST00000369327		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000396651	ENST00000369332		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000396651	ENST00000369329		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000396651	ENST00000479630		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000396651	ENST00000369320		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000369325		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000369327		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000369332		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000369329		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000479630		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
5CDS-intron	ENST00000372209	ENST00000369320		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000369325		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000369327		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000369332		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000369329		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000479630		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
3UTR-intron	ENST00000485390	ENST00000369320		ChiTaRS3.1			BM682967	RPS8	chr1	45243774	-	MAP3K7	chr6	91246054	+
intron-intron	ENST00000309415	ENST00000309415		ChiTaRS3.1			AA179627	SH3RF3	chr2	109872839	-	SH3RF3	chr2	109876821	-
intron-intron	ENST00000450966	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000450966	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000251722	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000427112	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000496298	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000409945	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000481646		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000469044		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000491704		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000358441		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000489213		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000461822		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000485396		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000471453		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000470821		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000393058		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-intron	ENST00000443711	ENST00000538260		ChiTaRS3.1			BX099887	USP40	chr2	234398073	+	ARMC8	chr3	137906828	-
intron-3CDS	ENST00000403627	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000403627	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000405159	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000405159	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000583178	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000583178	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000580032	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000580032	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000581110	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000581110	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000583024	ENST00000250113		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-intron	ENST00000583024	ENST00000573057		ChiTaRS3.1			BQ430227	FAM104A	chr17	71228281	+	FXR2	chr17	7497283	-
intron-3CDS	ENST00000216190	ENST00000216190		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000216190	ENST00000478547		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000216190	ENST00000541106		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000216190	ENST00000405442		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-3CDS	ENST00000478547	ENST00000216190		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000478547	ENST00000478547		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000478547	ENST00000541106		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000478547	ENST00000405442		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-3CDS	ENST00000541106	ENST00000216190		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000541106	ENST00000478547		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000541106	ENST00000541106		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000541106	ENST00000405442		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-3CDS	ENST00000405442	ENST00000216190		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000405442	ENST00000478547		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000405442	ENST00000541106		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-intron	ENST00000405442	ENST00000405442		ChiTaRS3.1			AI028447	EIF3D	chr22	36907656	+	EIF3D	chr22	36912638	-
intron-3UTR	ENST00000396795	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396795	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396795	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3UTR	ENST00000319770	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000319770	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000319770	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3UTR	ENST00000396801	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396801	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396801	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3UTR	ENST00000361959	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000361959	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000361959	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3UTR	ENST00000355772	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000355772	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000355772	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3UTR	ENST00000396799	ENST00000396721		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396799	ENST00000303749		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-intron	ENST00000396799	ENST00000522671		ChiTaRS3.1			BE464107	ZNF384	chr12	6776259	+	SDR16C5	chr8	57213284	+
intron-3CDS	ENST00000332981	ENST00000332981		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-5UTR	ENST00000332981	ENST00000555082		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-intron	ENST00000332981	ENST00000556245		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-3CDS	ENST00000555082	ENST00000332981		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-5UTR	ENST00000555082	ENST00000555082		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-intron	ENST00000555082	ENST00000556245		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-3CDS	ENST00000556245	ENST00000332981		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-5UTR	ENST00000556245	ENST00000555082		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-intron	ENST00000556245	ENST00000556245		ChiTaRS3.1			DA435287	PRKCH	chr14	61789253	-	PRKCH	chr14	61909828	+
intron-intron	ENST00000292782	ENST00000380861		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000292782	ENST00000454666		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000292782	ENST00000466248		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000469954	ENST00000380861		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000469954	ENST00000454666		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000469954	ENST00000466248		ChiTaRS3.1			T12477	DCUN1D1	chr3	182677833	+	WWC3	chrX	10107305	+
intron-intron	ENST00000237247	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000237247	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000371039	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000371039	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000371035	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000371035	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000468286	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000468286	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000371036	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000371036	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000371037	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000371037	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-intron	ENST00000435165	ENST00000587244		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000435165	ENST00000299721		ChiTaRS3.1			BQ640597	SGIP1	chr1	67155297	+	CPLX4	chr18	56963574	-
intron-3UTR	ENST00000331920	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000331920	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000331920	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000331920	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000331920	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000331920	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000331920	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000331920	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000331920	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000418258	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000418258	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000418258	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000418258	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000421141	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000421141	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000421141	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000421141	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000437951	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000437951	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000437951	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000437951	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000430669	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000430669	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000430669	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000430669	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000429896	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000429896	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000429896	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000429896	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000375274	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000375274	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000375274	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000375274	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000548379	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000548379	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000548379	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000548379	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000331920		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000418258		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000421141		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000437951		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000430669		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-3UTR	ENST00000468211	ENST00000429896		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000468211	ENST00000375274		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000468211	ENST00000548379		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000468211	ENST00000468211		ChiTaRS3.1			BC060667	PTCH1	chr9	98208373	+	PTCH1	chr9	98207660	-
intron-intron	ENST00000556468	ENST00000568943		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000414754		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000379906		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000561820		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000219833		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000566163		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000556468	ENST00000567238		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000568943		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000414754		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000379906		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000561820		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000219833		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000566163		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5UTR-intron	ENST00000253107	ENST00000567238		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000568943		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000414754		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000379906		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000561820		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000219833		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000566163		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
intron-intron	ENST00000393793	ENST00000567238		ChiTaRS3.1			BC007937	PPAN	chr19	10217026	-	SLC6A2	chr16	55738618	+
5CDS-5UTR	ENST00000481445	ENST00000481445		ChiTaRS3.1			CA944777	COX7B	chrX	77158162	-	COX7B	chrX	77155023	+
5CDS-3UTR	ENST00000481445	ENST00000475465		ChiTaRS3.1			CA944777	COX7B	chrX	77158162	-	COX7B	chrX	77155023	+
3UTR-5UTR	ENST00000475465	ENST00000481445		ChiTaRS3.1			CA944777	COX7B	chrX	77158162	-	COX7B	chrX	77155023	+
3UTR-3UTR	ENST00000475465	ENST00000475465		ChiTaRS3.1			CA944777	COX7B	chrX	77158162	-	COX7B	chrX	77155023	+
intron-intron	ENST00000375663	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000375663	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000375663	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000375663	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000375663	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000482996	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000482996	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000482996	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000482996	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000482996	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000444930	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000444930	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000444930	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000444930	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000444930	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000435657	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000435657	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000435657	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000435657	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000435657	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000487524	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000487524	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000487524	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000487524	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000487524	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000457796	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000457796	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000457796	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000457796	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000457796	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000469542	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000469542	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000469542	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000469542	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000469542	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000211402	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000211402	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000211402	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000211402	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000211402	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000462946	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000462946	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000462946	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000462946	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000462946	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000422694	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000422694	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000422694	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000422694	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000422694	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000491232	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000491232	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000491232	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000491232	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000491232	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000424974	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000424974	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000424974	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000424974	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000424974	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000425144	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000425144	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000425144	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000425144	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000425144	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000474299	ENST00000521193		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000474299	ENST00000519148		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000474299	ENST00000505857		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-5UTR	ENST00000474299	ENST00000329245		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000474299	ENST00000523676		ChiTaRS3.1			BU147307	VARS	chr6	3081180	+	TOP1MT	chr8	144417033	-
intron-intron	ENST00000301923	ENST00000264731		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000382063		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000418709		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000320472		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000392460		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000440651		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000354600		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000437221		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000392463		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000392461		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000456148		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000301923	ENST00000449992		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000264731		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000382063		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000418709		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000320472		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000392460		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000440651		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000354600		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000437221		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000392463		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000392461		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000456148		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000402203	ENST00000449992		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000264731		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000382063		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000418709		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000320472		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000392460		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000440651		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000354600		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000437221		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000392463		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000392461		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000456148		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000454349	ENST00000449992		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000264731		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000382063		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000418709		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000320472		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000392460		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000440651		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000354600		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000437221		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000392463		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000392461		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000456148		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000335727	ENST00000449992		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000264731		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000382063		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000418709		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000320472		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000392460		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000440651		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000354600		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000437221		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000392463		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000392461		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000456148		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-intron	ENST00000497559	ENST00000449992		ChiTaRS3.1			AW852777	TNRC6B	chr22	40685172	-	TP63	chr3	189449037	-
intron-3UTR	ENST00000361236	ENST00000361236		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000361236	ENST00000398136		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000361236	ENST00000532161		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000361236	ENST00000525577		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000398136	ENST00000361236		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000398136	ENST00000398136		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000398136	ENST00000532161		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000398136	ENST00000525577		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000532161	ENST00000361236		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000532161	ENST00000398136		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000532161	ENST00000532161		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000532161	ENST00000525577		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000525577	ENST00000361236		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-3UTR	ENST00000525577	ENST00000398136		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000525577	ENST00000532161		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
intron-intron	ENST00000525577	ENST00000525577		ChiTaRS3.1			T10817	TMEM123	chr11	102267254	+	TMEM123	chr11	102267235	-
5CDS-3UTR	ENST00000270142	ENST00000380542		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
5CDS-intron	ENST00000270142	ENST00000469089		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
5CDS-intron	ENST00000270142	ENST00000526115		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
5CDS-3UTR	ENST00000389995	ENST00000380542		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
5CDS-intron	ENST00000389995	ENST00000469089		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
5CDS-intron	ENST00000389995	ENST00000526115		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
3UTR-3UTR	ENST00000470944	ENST00000380542		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
3UTR-intron	ENST00000470944	ENST00000469089		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
3UTR-intron	ENST00000470944	ENST00000526115		ChiTaRS3.1			AW948547	SOD1	chr21	33039689	+	NAP1L4	chr11	2965892	+
intron-3CDS	ENST00000311330	ENST00000311330		ChiTaRS3.1			CF131257	CD248	chr11	66082162	-	CD248	chr11	66083192	-
5CDS-5UTR	ENST00000295897	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000295897	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000415165	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000415165	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000503124	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000503124	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000509063	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000509063	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-5UTR	ENST00000401494	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
5CDS-intron	ENST00000401494	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
3UTR-5UTR	ENST00000505649	ENST00000250784		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
3UTR-intron	ENST00000505649	ENST00000477725		ChiTaRS3.1			AI174917	ALB	chr4	74281996	-	RPS4Y1	chrY	2709643	+
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			BU783107	MEG3	chr14	101302553	-	MEG3	chr14	101302125	+
3UTR-intron	ENST00000328735	ENST00000429029		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000262177		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000452797		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000443280		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000494267		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000429029		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000262177		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000452797		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000443280		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000494267		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000429029		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000262177		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000452797		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000443280		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000494267		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000429029		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000262177		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000452797		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000443280		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000494267		ChiTaRS3.1			AI636667	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
intron-3UTR	ENST00000265362	ENST00000339865		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000265362	ENST00000539466		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000265362	ENST00000527733		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000265362	ENST00000399455		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000265362	ENST00000305481		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000436949	ENST00000339865		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000436949	ENST00000539466		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000436949	ENST00000527733		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000436949	ENST00000399455		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000436949	ENST00000305481		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000471474	ENST00000339865		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000471474	ENST00000539466		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-intron	ENST00000471474	ENST00000527733		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000471474	ENST00000399455		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
intron-3UTR	ENST00000471474	ENST00000305481		ChiTaRS3.1			BQ012805	SEMA3A	chr7	83703170	-	USP47	chr11	11977985	-
5UTR-3CDS	ENST00000248594	ENST00000529230		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000415402		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000312055		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000354558		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-intron	ENST00000248594	ENST00000532321		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000529230		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000415402		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000312055		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000354558		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000415482	ENST00000532321		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000529230		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000415402		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000312055		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000354558		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000435495	ENST00000532321		ChiTaRS3.1			BE466787	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000379933	ENST00000438423		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000267811		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000452095		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000333725		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000557843		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000560764		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000543579		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000537840		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000343827		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000559710		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379933	ENST00000559703		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000438423		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000267811		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000452095		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000333725		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000557843		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000560764		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000543579		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000537840		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000343827		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000559710		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000379938	ENST00000559703		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000438423		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000267811		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000452095		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000333725		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000557843		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000560764		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000543579		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000537840		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000343827		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000559710		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000334984	ENST00000559703		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000438423		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000267811		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000452095		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000333725		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000557843		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000560764		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000543579		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000537840		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000343827		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000559710		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-intron	ENST00000349384	ENST00000559703		ChiTaRS3.1			BE072437	RREB1	chr6	7212843	-	TCF12	chr15	57282442	+
intron-3CDS	ENST00000529689	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000529689	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529689	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529689	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529689	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529689	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000455220	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000455220	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000455220	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000455220	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000455220	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000455220	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000525504	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000525504	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525504	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525504	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525504	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525504	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000525503	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000525503	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525503	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525503	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525503	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000525503	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000529611	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000529611	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529611	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529611	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529611	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529611	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000529073	ENST00000529689		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3CDS	ENST00000529073	ENST00000455220		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529073	ENST00000525504		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529073	ENST00000525503		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529073	ENST00000529611		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-intron	ENST00000529073	ENST00000529073		ChiTaRS3.1			BG167137	CCDC90B	chr11	82972579	+	CCDC90B	chr11	82984848	-
intron-3UTR	ENST00000394524	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394524	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394524	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394524	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394524	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394524	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394524	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000454265	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000454265	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394526	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394526	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000429180	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000429180	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000296402	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000296402	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000418639	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000418639	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000511664	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000511664	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000342666	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000342666	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000515496	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000515496	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000514328	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000514328	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394522	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000394522	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000505990	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000505990	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000379773	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000379773	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000508738	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000508738	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000394524		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000454265		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000394526		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000429180		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000296402		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000509907	ENST00000418639		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000511664		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000342666		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000515496		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000514328		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000394522		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000505990		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000379773		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000508738		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-intron	ENST00000509907	ENST00000509907		ChiTaRS3.1			AI810957	CAMK2D	chr4	114374434	+	CAMK2D	chr4	114373560	+
intron-3UTR	ENST00000394480	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000394480	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000394480	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000394480	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000394480	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000394480	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000557856	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000557856	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000557856	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000557856	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000557856	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000557856	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000357724	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000357724	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000357724	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000357724	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000357724	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000357724	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000355254	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000355254	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000355254	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000355254	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000355254	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000355254	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000360948	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000360948	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000360948	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000360948	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000360948	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000360948	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000542733	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000542733	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000542733	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000542733	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000542733	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000542733	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558676	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558676	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000558676	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000558676	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558676	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558676	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000317501	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000317501	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000317501	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000317501	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000317501	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000317501	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558306	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558306	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000558306	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000558306	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558306	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000558306	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000540489	ENST00000552014		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000540489	ENST00000202831		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000540489	ENST00000546737		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000540489	ENST00000553238		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000540489	ENST00000550047		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-3UTR	ENST00000540489	ENST00000549069		ChiTaRS3.1			BF879827	NTRK3	chr15	88768823	-	SLC8B1	chr12	113737337	-
intron-intron	ENST00000466152	ENST00000466152		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000466152	ENST00000371588		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000466152	ENST00000371582		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000466152	ENST00000371583		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371588	ENST00000466152		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371588	ENST00000371588		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371588	ENST00000371582		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371588	ENST00000371583		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371582	ENST00000466152		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371582	ENST00000371588		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371582	ENST00000371582		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371582	ENST00000371583		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371583	ENST00000466152		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371583	ENST00000371588		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371583	ENST00000371582		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000371583	ENST00000371583		ChiTaRS3.1			AW937417	DPM1	chr20	49565717	-	DPM1	chr20	49567154	-
intron-intron	ENST00000331397	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000331397	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000382896	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000382896	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000537580	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000537580	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000362096	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000362096	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000329134	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000329134	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000538878	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000538878	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000540140	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000540140	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000545955	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000545955	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000474365	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000474365	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000382893	ENST00000382902		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000382893	ENST00000307050		ChiTaRS3.1			AI379977	UTY	chrY	15359375	+	OTUD7A	chr15	32005592	-
intron-intron	ENST00000262418	ENST00000282111		ChiTaRS3.1			AJ709327	SLC4A1	chr17	42325911	+	TCF7L1	chr2	85362888	-
intron-intron	ENST00000262418	ENST00000494519		ChiTaRS3.1			AJ709327	SLC4A1	chr17	42325911	+	TCF7L1	chr2	85362888	-
intron-intron	ENST00000471005	ENST00000282111		ChiTaRS3.1			AJ709327	SLC4A1	chr17	42325911	+	TCF7L1	chr2	85362888	-
intron-intron	ENST00000471005	ENST00000494519		ChiTaRS3.1			AJ709327	SLC4A1	chr17	42325911	+	TCF7L1	chr2	85362888	-
intron-3CDS	ENST00000476258	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000476258	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000476258	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000476258	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000405458	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000405458	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000405458	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000405458	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000409753	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000409753	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000409753	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000409753	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000482348	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000482348	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000482348	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000482348	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000356033	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000356033	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000356033	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000356033	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000470924	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000470924	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000470924	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000470924	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000481647	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000481647	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000481647	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000481647	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000392566	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000392566	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000392566	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000392566	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000581874	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000581874	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000581874	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000581874	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000465454	ENST00000422057		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000465454	ENST00000317318		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000465454	ENST00000423270		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-3CDS	ENST00000465454	ENST00000559447		ChiTaRS3.1			DB315927	HN1	chr17	73131582	+	RFX7	chr15	56387641	+
intron-intron	ENST00000373237	ENST00000579192		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-intron	ENST00000373237	ENST00000380067		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-intron	ENST00000373237	ENST00000396278		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-intron	ENST00000373237	ENST00000581320		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-intron	ENST00000373237	ENST00000580340		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-3UTR	ENST00000373237	ENST00000577745		ChiTaRS3.1			CB156087	PSMB2	chr1	36068140	+	SLC25A35	chr17	8193640	-
intron-intron	ENST00000276204	ENST00000276204		ChiTaRS3.1			BI740297	DOCK11	chrX	117711515	+	DOCK11	chrX	117710824	+
intron-intron	ENST00000276204	ENST00000276202		ChiTaRS3.1			BI740297	DOCK11	chrX	117711515	+	DOCK11	chrX	117710824	+
intron-intron	ENST00000276202	ENST00000276204		ChiTaRS3.1			BI740297	DOCK11	chrX	117711515	+	DOCK11	chrX	117710824	+
intron-intron	ENST00000276202	ENST00000276202		ChiTaRS3.1			BI740297	DOCK11	chrX	117711515	+	DOCK11	chrX	117710824	+
intron-3CDS	ENST00000222690	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000222690	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000222690	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000222690	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000222690	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000222690	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000437072	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000437072	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000437072	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000437072	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000437072	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000437072	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000349299	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000349299	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000349299	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000349299	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000349299	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000349299	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000308153	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000308153	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000308153	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000308153	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000308153	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000308153	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000350771	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000350771	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000350771	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000350771	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000350771	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000350771	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000381124	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000381124	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000381124	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000381124	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000381124	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000381124	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000521529	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000521529	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000521529	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000521529	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000521529	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000521529	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000446531	ENST00000254066		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000446531	ENST00000394089		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000446531	ENST00000425707		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000446531	ENST00000394086		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000446531	ENST00000394081		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-intron	ENST00000446531	ENST00000420042		ChiTaRS3.1			BE794377	H2AFV	chr7	44880525	-	RARA	chr17	38506148	+
intron-3CDS	ENST00000608933	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3CDS	ENST00000295908	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3CDS	ENST00000508256	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3CDS	ENST00000506423	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3CDS	ENST00000315194	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3CDS	ENST00000514204	ENST00000358571		ChiTaRS3.1			BX279877	PPM1K	chr4	89205795	+	PFN3	chr5	176827456	-
intron-3UTR	ENST00000280187	ENST00000265983		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-intron	ENST00000280187	ENST00000525057		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-3UTR	ENST00000393658	ENST00000265983		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-intron	ENST00000393658	ENST00000525057		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-3UTR	ENST00000506894	ENST00000265983		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-intron	ENST00000506894	ENST00000525057		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-3UTR	ENST00000515090	ENST00000265983		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-intron	ENST00000515090	ENST00000525057		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-3UTR	ENST00000506219	ENST00000265983		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-intron	ENST00000506219	ENST00000525057		ChiTaRS3.1			AV688767	GPM6A	chr4	176751287	-	HPX	chr11	6452329	-
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			BI819767	IGKC	chr2	89156941	+	IGKC	chr2	89156889	-
intron-intron	ENST00000563580	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000563580	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000564910	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000261890	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000565075	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000435304	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000563580		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000564910		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000261890		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000565075		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000435304		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
5CDS-intron	ENST00000569896	ENST00000569896		ChiTaRS3.1			CB242787	RAB11A	chr15	66170266	-	RAB11A	chr15	66170114	+
intron-intron	ENST00000400128	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400128	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400131	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400135	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000400127	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000338326	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
5UTR-intron	ENST00000299295	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000319622		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000565184		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000389093		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000335181		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000568883		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000449901		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000565154		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000543733	ENST00000568459		ChiTaRS3.1			BU561657	CHODL	chr21	19617296	+	PKM	chr15	72502387	+
intron-intron	ENST00000269033	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000269033	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000269033	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000269033	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000269033	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000540801	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000540801	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000540801	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000540801	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000540801	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000324677	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000324677	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000324677	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000324677	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000324677	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000582084	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000582084	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000582084	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000582084	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000582084	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000590153	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000590153	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000590153	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000590153	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000590153	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000579954	ENST00000518270		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000579954	ENST00000520817		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000579954	ENST00000405786		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000579954	ENST00000357743		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-intron	ENST00000579954	ENST00000521417		ChiTaRS3.1			BF988817	SSH2	chr17	28050973	+	GOLGA7	chr8	41368022	+
intron-3UTR	ENST00000539068	ENST00000539068		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000539068	ENST00000536438		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000539068	ENST00000357266		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000539068	ENST00000540787		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000539068	ENST00000542713		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000539068		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000536438		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000357266		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000536438	ENST00000540787		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000536438	ENST00000542713		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000539068		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000536438		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000357266		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000357266	ENST00000540787		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000357266	ENST00000542713		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000539068		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000536438		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000357266		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000540787	ENST00000540787		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000540787	ENST00000542713		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000539068		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000536438		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000357266		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000542713	ENST00000540787		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000542713	ENST00000542713		ChiTaRS3.1			CA418117	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3CDS	ENST00000389221	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000389221	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000389221	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000389221	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000389221	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000508903	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000508903	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000508903	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000508903	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000508903	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000397462	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397462	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397462	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397462	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397462	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000391893	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000391893	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000391893	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000391893	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000391893	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000403703	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000403703	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000403703	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000403703	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000403703	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000248104	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000248104	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000248104	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000248104	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000248104	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000397464	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397464	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397464	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397464	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000397464	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000402641	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000402641	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000402641	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000402641	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000402641	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000301712	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000301712	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000301712	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000301712	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000301712	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3CDS	ENST00000503648	ENST00000346128		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000503648	ENST00000400011		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000503648	ENST00000356107		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000503648	ENST00000545208		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-intron	ENST00000503648	ENST00000495972		ChiTaRS3.1			L14837	UNKL	chr16	1421841	+	TJP1	chr15	30114706	-
intron-3UTR	ENST00000327245	ENST00000369762		ChiTaRS3.1			AL121297	ATP10B	chr5	160028430	+	ATP6AP1	chrX	153664699	-
intron-intron	ENST00000327245	ENST00000484908		ChiTaRS3.1			AL121297	ATP10B	chr5	160028430	+	ATP6AP1	chrX	153664699	-
intron-3UTR	ENST00000518411	ENST00000369762		ChiTaRS3.1			AL121297	ATP10B	chr5	160028430	+	ATP6AP1	chrX	153664699	-
intron-intron	ENST00000518411	ENST00000484908		ChiTaRS3.1			AL121297	ATP10B	chr5	160028430	+	ATP6AP1	chrX	153664699	-
intron-intron	ENST00000508628	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000508628	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000508628	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000508628	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000508628	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000508628	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000456466	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000582970	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000319921	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000336301	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000508628		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000456466		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000582970		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000319921		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000336301		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
intron-intron	ENST00000427003	ENST00000427003		ChiTaRS3.1			BE841247	RNF213	chr17	78355657	-	RNF213	chr17	78360691	-
In-frame	ENST00000250784	ENST00000400198		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
5CDS-intron	ENST00000250784	ENST00000472226		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
5CDS-intron	ENST00000250784	ENST00000375926		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
3UTR-3CDS	ENST00000477725	ENST00000400198		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
3UTR-intron	ENST00000477725	ENST00000472226		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
3UTR-intron	ENST00000477725	ENST00000375926		ChiTaRS3.1			BI047537	RPS4Y1	chrY	2733176	+	ARGLU1	chr13	107220075	+
intron-3UTR	ENST00000439128	ENST00000288266		ChiTaRS3.1			N56837	NEK1	chr4	170446574	-	APPL1	chr3	57306892	+
intron-3UTR	ENST00000511633	ENST00000288266		ChiTaRS3.1			N56837	NEK1	chr4	170446574	-	APPL1	chr3	57306892	+
intron-3UTR	ENST00000510533	ENST00000288266		ChiTaRS3.1			N56837	NEK1	chr4	170446574	-	APPL1	chr3	57306892	+
intron-3UTR	ENST00000507142	ENST00000288266		ChiTaRS3.1			N56837	NEK1	chr4	170446574	-	APPL1	chr3	57306892	+
intron-3UTR	ENST00000512193	ENST00000288266		ChiTaRS3.1			N56837	NEK1	chr4	170446574	-	APPL1	chr3	57306892	+
3UTR-3CDS	ENST00000012443	ENST00000280665		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-3CDS	ENST00000012443	ENST00000397173		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-5UTR	ENST00000012443	ENST00000541700		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-5UTR	ENST00000012443	ENST00000540622		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-3CDS	ENST00000391919	ENST00000280665		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-3CDS	ENST00000391919	ENST00000397173		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-5UTR	ENST00000391919	ENST00000541700		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
3UTR-5UTR	ENST00000391919	ENST00000540622		ChiTaRS3.1			AW262847	PPP5C	chr19	46894039	-	DCP1B	chr12	2062251	+
intron-intron	ENST00000312962	ENST00000156109		ChiTaRS3.1			CV322157	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-intron	ENST00000361821	ENST00000156109		ChiTaRS3.1			CV322157	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-intron	ENST00000537964	ENST00000156109		ChiTaRS3.1			CV322157	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-3CDS	ENST00000368679	ENST00000351960		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000368679	ENST00000358965		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000368679	ENST00000393695		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-intron	ENST00000368679	ENST00000543450		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000368676	ENST00000351960		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000368676	ENST00000358965		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000368676	ENST00000393695		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-intron	ENST00000368676	ENST00000543450		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000467145	ENST00000351960		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000467145	ENST00000358965		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-3CDS	ENST00000467145	ENST00000393695		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-intron	ENST00000467145	ENST00000543450		ChiTaRS3.1			BF996597	ADAM12	chr10	127737935	+	NUMA1	chr11	71735387	-
intron-intron	ENST00000372733	ENST00000372733		ChiTaRS3.1			BF768117	SDC4	chr20	43967860	-	SDC4	chr20	43968032	+
intron-intron	ENST00000372733	ENST00000537976		ChiTaRS3.1			BF768117	SDC4	chr20	43967860	-	SDC4	chr20	43968032	+
intron-intron	ENST00000537976	ENST00000372733		ChiTaRS3.1			BF768117	SDC4	chr20	43967860	-	SDC4	chr20	43968032	+
intron-intron	ENST00000537976	ENST00000537976		ChiTaRS3.1			BF768117	SDC4	chr20	43967860	-	SDC4	chr20	43968032	+
intron-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548117	OFCC1	chr6	9908839	+	OFCC1	chr6	9864348	-
intron-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548117	OFCC1	chr6	9908839	+	OFCC1	chr6	9864348	-
intron-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548117	OFCC1	chr6	9908839	+	OFCC1	chr6	9864348	-
intron-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548117	OFCC1	chr6	9908839	+	OFCC1	chr6	9864348	-
intron-intron	ENST00000455485	ENST00000455485		ChiTaRS3.1			BM920247	GUSBP11	chr22	24040153	-	GUSBP11	chr22	24038688	+
intron-intron	ENST00000335459	ENST00000264657		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000335459	ENST00000585517		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000335459	ENST00000389272		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000335459	ENST00000588969		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000335459	ENST00000404395		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000335459	ENST00000590776		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000264657		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000585517		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000389272		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000588969		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000404395		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409520	ENST00000590776		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000264657		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000585517		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000389272		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000588969		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000404395		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000409133	ENST00000590776		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000264657		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000585517		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000389272		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000588969		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000404395		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-intron	ENST00000479944	ENST00000590776		ChiTaRS3.1			BF849137	TRABD2A	chr2	85062806	-	STAT3	chr17	40525649	+
intron-3CDS	ENST00000350026	ENST00000322723		ChiTaRS3.1			BE935207	ARID1B	chr6	157135106	-	NCL	chr2	232320801	-
intron-3CDS	ENST00000346085	ENST00000322723		ChiTaRS3.1			BE935207	ARID1B	chr6	157135106	-	NCL	chr2	232320801	-
intron-3CDS	ENST00000367148	ENST00000322723		ChiTaRS3.1			BE935207	ARID1B	chr6	157135106	-	NCL	chr2	232320801	-
intron-3CDS	ENST00000275248	ENST00000322723		ChiTaRS3.1			BE935207	ARID1B	chr6	157135106	-	NCL	chr2	232320801	-
intron-3CDS	ENST00000478761	ENST00000322723		ChiTaRS3.1			BE935207	ARID1B	chr6	157135106	-	NCL	chr2	232320801	-
intron-5UTR	ENST00000595830	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000595830	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000595830	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000396147	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000396147	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000396147	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000599086	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000599086	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000599086	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000425570	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000425570	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000425570	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000600989	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000600989	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000600989	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000599852	ENST00000400921		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-5UTR	ENST00000599852	ENST00000400920		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-intron	ENST00000599852	ENST00000479263		ChiTaRS3.1			DA082137	ZNF418	chr19	58446448	-	PRKCZ	chr1	2075646	+
intron-3UTR	ENST00000376007	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376007	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376007	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000376007	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376007	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376007	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000469577	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000469577	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000469577	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000469577	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000469577	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000469577	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376033	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376033	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376033	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000376033	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376033	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000376033	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549037	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549037	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549037	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000549037	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549037	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549037	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551794	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551794	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551794	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000551794	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551794	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551794	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000435971	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000435971	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000435971	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000435971	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000435971	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000435971	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000485195	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000485195	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000485195	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000485195	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000485195	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000485195	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000428775	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000428775	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000428775	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000428775	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000428775	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000428775	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000550674	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000550674	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000550674	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000550674	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000550674	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000550674	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000548373	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000548373	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000548373	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000548373	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000548373	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000548373	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000439762	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000439762	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000439762	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000439762	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000439762	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000439762	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000416335	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000416335	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000416335	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000416335	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000416335	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000416335	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000473169	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000473169	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000473169	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000473169	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000473169	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000473169	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550109	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550109	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550109	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-5UTR	ENST00000550109	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550109	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550109	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550609	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550609	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550609	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-5UTR	ENST00000550609	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550609	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000550609	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000454306	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000454306	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000454306	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-5UTR	ENST00000454306	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000454306	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000454306	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000468994	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000468994	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000468994	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000468994	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000468994	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000468994	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000432252	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000432252	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000432252	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-5UTR	ENST00000432252	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000432252	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
5CDS-3UTR	ENST00000432252	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551341	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551341	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551341	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000551341	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551341	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000551341	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547457	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547457	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547457	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000547457	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547457	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547457	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383464	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383464	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383464	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000383464	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383464	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383464	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000470109	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000470109	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000470109	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000470109	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000470109	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000470109	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383455	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383455	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383455	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000383455	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383455	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000383455	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547056	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547056	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547056	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000547056	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547056	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547056	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549383	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549383	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549383	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000549383	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549383	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549383	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000458561	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000458561	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000458561	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000458561	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000458561	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000458561	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000466607	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000466607	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000466607	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000466607	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000466607	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000466607	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000414956	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000414956	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000414956	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000414956	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000414956	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000414956	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547669	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547669	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547669	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000547669	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547669	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000547669	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549768	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549768	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549768	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000549768	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549768	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000549768	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000430737	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000430737	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000430737	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000430737	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000430737	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000430737	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000484613	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000484613	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000484613	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000484613	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000484613	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000484613	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000422962	ENST00000296444		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000422962	ENST00000444115		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000422962	ENST00000426002		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-5UTR	ENST00000422962	ENST00000465449		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000422962	ENST00000442747		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-3UTR	ENST00000422962	ENST00000443308		ChiTaRS3.1			CD365317	PRRC2A	chr6	2984047	-	SHISA5	chr3	48509887	+
intron-intron	ENST00000465917	ENST00000465917		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000465917	ENST00000245796		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000465917	ENST00000441564		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000245796	ENST00000465917		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000245796	ENST00000245796		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000245796	ENST00000441564		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000441564	ENST00000465917		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000441564	ENST00000245796		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000441564	ENST00000441564		ChiTaRS3.1			AW176277	PSD4	chr2	113954355	-	PSD4	chr2	113955176	-
intron-intron	ENST00000435504	ENST00000435504		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000435504	ENST00000336112		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000435504	ENST00000272341		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000435504	ENST00000404843		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000435504	ENST00000497092		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000336112	ENST00000435504		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000336112	ENST00000336112		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000336112	ENST00000272341		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000336112	ENST00000404843		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000336112	ENST00000497092		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000272341	ENST00000435504		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000272341	ENST00000336112		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000272341	ENST00000272341		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000272341	ENST00000404843		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000272341	ENST00000497092		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000404843	ENST00000435504		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000404843	ENST00000336112		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000404843	ENST00000272341		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000404843	ENST00000404843		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000404843	ENST00000497092		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000497092	ENST00000435504		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000497092	ENST00000336112		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000497092	ENST00000272341		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000497092	ENST00000404843		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000497092	ENST00000497092		ChiTaRS3.1			AA586527	ASXL2	chr2	25988945	+	ASXL2	chr2	25989019	-
intron-intron	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893507	ZNF438	chr10	31230582	+	ZNF438	chr10	31165927	+
intron-3CDS	ENST00000264235	ENST00000264235		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-3CDS	ENST00000264235	ENST00000316626		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-5UTR	ENST00000264235	ENST00000473886		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-3CDS	ENST00000316626	ENST00000264235		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-3CDS	ENST00000316626	ENST00000316626		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-5UTR	ENST00000316626	ENST00000473886		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-3CDS	ENST00000473886	ENST00000264235		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-3CDS	ENST00000473886	ENST00000316626		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-5UTR	ENST00000473886	ENST00000473886		ChiTaRS3.1			AA678627	GSK3B	chr3	119582283	+	GSK3B	chr3	119582343	-
intron-intron	ENST00000327367	ENST00000519416		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000520615		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000443286		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000520340		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000518415		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000522752		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000348567		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000330691		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000317827		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000379931		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000276520		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000520973		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000327367	ENST00000520611		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000519416		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000520615		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000443286		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000520340		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000518415		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000522752		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000348567		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000330691		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000317827		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000379931		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000276520		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000520973		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000559092	ENST00000520611		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000519416		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000520615		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000443286		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000520340		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000518415		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000522752		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000348567		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000330691		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000317827		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000379931		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000276520		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000520973		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000540846	ENST00000520611		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000519416		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000520615		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000443286		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000520340		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000518415		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000522752		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000348567		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000330691		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000317827		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000379931		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000276520		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000520973		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000439724	ENST00000520611		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000519416		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000520615		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000443286		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000520340		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000518415		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000522752		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000348567		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000330691		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000317827		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000379931		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000276520		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000520973		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-intron	ENST00000537194	ENST00000520611		ChiTaRS3.1			BF358787	SMAD3	chr15	67394595	+	TACC1	chr8	38627561	+
intron-3CDS	ENST00000200453	ENST00000200453		ChiTaRS3.1			BF986247	PPP1R15A	chr19	49378806	-	PPP1R15A	chr19	49377003	+
intron-3CDS	ENST00000589651	ENST00000493429		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
intron-3CDS	ENST00000589651	ENST00000467291		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
intron-3CDS	ENST00000589651	ENST00000360937		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
intron-3CDS	ENST00000589651	ENST00000416793		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
intron-3UTR	ENST00000589651	ENST00000480582		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
3UTR-3CDS	ENST00000270233	ENST00000493429		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
3UTR-3CDS	ENST00000270233	ENST00000467291		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
3UTR-3CDS	ENST00000270233	ENST00000360937		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
3UTR-3CDS	ENST00000270233	ENST00000416793		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
3UTR-3UTR	ENST00000270233	ENST00000480582		ChiTaRS3.1			AA367777	BCAM	chr19	45324536	-	AOC1	chr7	150558134	-
intron-intron	ENST00000462448	ENST00000462448		ChiTaRS3.1			AW804357	STK17A	chr7	43664566	-	STK17A	chr7	43664608	+
intron-3UTR	ENST00000462448	ENST00000319357		ChiTaRS3.1			AW804357	STK17A	chr7	43664566	-	STK17A	chr7	43664608	+
3UTR-intron	ENST00000319357	ENST00000462448		ChiTaRS3.1			AW804357	STK17A	chr7	43664566	-	STK17A	chr7	43664608	+
3UTR-3UTR	ENST00000319357	ENST00000319357		ChiTaRS3.1			AW804357	STK17A	chr7	43664566	-	STK17A	chr7	43664608	+
intron-3UTR	ENST00000383777	ENST00000545170		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000383777	ENST00000429774		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000383777	ENST00000393287		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000383777	ENST00000502250		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000383777	ENST00000503767		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000383777	ENST00000340660		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000383777	ENST00000532032		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000383777	ENST00000554491		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000399451	ENST00000545170		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000399451	ENST00000429774		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000399451	ENST00000393287		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000399451	ENST00000502250		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000399451	ENST00000503767		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000399451	ENST00000340660		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000399451	ENST00000532032		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000399451	ENST00000554491		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000497037	ENST00000545170		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000497037	ENST00000429774		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000497037	ENST00000393287		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3UTR	ENST00000497037	ENST00000502250		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000497037	ENST00000503767		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000497037	ENST00000340660		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000497037	ENST00000532032		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-intron	ENST00000497037	ENST00000554491		ChiTaRS3.1			AW002937	ANKRD28	chr3	15797887	-	ATXN3	chr14	92530428	+
intron-3CDS	ENST00000529639	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-3CDS	ENST00000531743	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-3CDS	ENST00000525297	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-3CDS	ENST00000527548	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-3CDS	ENST00000279259	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
Frame-shit	ENST00000529259	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-3CDS	ENST00000434372	ENST00000300151		ChiTaRS3.1			BM990847	FAU	chr11	64888170	+	MRPL16	chr11	59574306	-
intron-intron	ENST00000517970	ENST00000517970		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000517970	ENST00000349423		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000517970	ENST00000341922		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000517970	ENST00000265428		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000517970	ENST00000523863		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000349423	ENST00000517970		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000349423	ENST00000349423		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000349423	ENST00000341922		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000349423	ENST00000265428		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000349423	ENST00000523863		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000341922	ENST00000517970		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000341922	ENST00000349423		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000341922	ENST00000341922		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000341922	ENST00000265428		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000341922	ENST00000523863		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000265428	ENST00000517970		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000265428	ENST00000349423		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000265428	ENST00000341922		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000265428	ENST00000265428		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000265428	ENST00000523863		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000523863	ENST00000517970		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000523863	ENST00000349423		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000523863	ENST00000341922		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000523863	ENST00000265428		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
intron-intron	ENST00000523863	ENST00000523863		ChiTaRS3.1			DB311657	WWP1	chr8	87376728	-	WWP1	chr8	87378342	-
Frame-shit	ENST00000323345	ENST00000261769		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
5CDS-intron	ENST00000323345	ENST00000422392		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
5CDS-3UTR	ENST00000323345	ENST00000562836		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
3UTR-3CDS	ENST00000463740	ENST00000261769		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
3UTR-intron	ENST00000463740	ENST00000422392		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
3UTR-3UTR	ENST00000463740	ENST00000562836		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
intron-3CDS	ENST00000315731	ENST00000261769		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
intron-intron	ENST00000315731	ENST00000422392		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
intron-3UTR	ENST00000315731	ENST00000562836		ChiTaRS3.1			BU681467	RPL7A	chr9	136216808	-	CDH1	chr16	68847239	-
intron-intron	ENST00000512453	ENST00000541913		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000397168		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000572969		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000355380		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000575375		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000573128		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512453	ENST00000268981		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000541913		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000397168		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000572969		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000355380		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000575375		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000573128		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000282356	ENST00000268981		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000541913		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000397168		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000572969		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000355380		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000575375		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000573128		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000512890	ENST00000268981		ChiTaRS3.1			AW899117	CAMK4	chr5	110614918	-	SPATA22	chr17	3414247	+
intron-intron	ENST00000448838	ENST00000354618		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000448838	ENST00000469141		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000448838	ENST00000466743		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000354618		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000469141		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000466743		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000354618		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000469141		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000466743		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000354618		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000469141		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000466743		ChiTaRS3.1			AK024187	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-3CDS	ENST00000317178	ENST00000258187		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000317178	ENST00000394282		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000317178	ENST00000394279		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000317178	ENST00000566192		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000317178	ENST00000568640		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000563022		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000569923		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000356752		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000563799		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000562999		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000317178	ENST00000570248		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000431353	ENST00000258187		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000431353	ENST00000394282		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000431353	ENST00000394279		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000431353	ENST00000566192		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000431353	ENST00000568640		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000563022		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000569923		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000356752		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000563799		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000562999		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000431353	ENST00000570248		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000489376	ENST00000258187		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000489376	ENST00000394282		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000489376	ENST00000394279		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000489376	ENST00000566192		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3CDS	ENST00000489376	ENST00000568640		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000563022		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000569923		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000356752		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000563799		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000562999		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-intron	ENST00000489376	ENST00000570248		ChiTaRS3.1			DA097267	ZNF776	chr19	58235071	-	NDRG4	chr16	58543071	+
intron-3UTR	ENST00000233616	ENST00000534336		ChiTaRS3.1			BF803127	MOGS	chr2	74689528	+	MALAT1	chr11	65271740	+
intron-3UTR	ENST00000452063	ENST00000534336		ChiTaRS3.1			BF803127	MOGS	chr2	74689528	+	MALAT1	chr11	65271740	+
intron-3UTR	ENST00000409065	ENST00000534336		ChiTaRS3.1			BF803127	MOGS	chr2	74689528	+	MALAT1	chr11	65271740	+
intron-3UTR	ENST00000462443	ENST00000534336		ChiTaRS3.1			BF803127	MOGS	chr2	74689528	+	MALAT1	chr11	65271740	+
intron-3UTR	ENST00000535045	ENST00000534336		ChiTaRS3.1			BF803127	MOGS	chr2	74689528	+	MALAT1	chr11	65271740	+
intron-intron	ENST00000507479	ENST00000507479		ChiTaRS3.1			BU689807	ANKRD37	chr4	186320884	-	ANKRD37	chr4	186320777	+
intron-intron	ENST00000507479	ENST00000335174		ChiTaRS3.1			BU689807	ANKRD37	chr4	186320884	-	ANKRD37	chr4	186320777	+
5CDS-intron	ENST00000335174	ENST00000507479		ChiTaRS3.1			BU689807	ANKRD37	chr4	186320884	-	ANKRD37	chr4	186320777	+
5CDS-intron	ENST00000335174	ENST00000335174		ChiTaRS3.1			BU689807	ANKRD37	chr4	186320884	-	ANKRD37	chr4	186320777	+
intron-intron	ENST00000543470	ENST00000348715		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543470	ENST00000397647		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543470	ENST00000263335		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543470	ENST00000429538		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543470	ENST00000263334		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366960	ENST00000348715		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366960	ENST00000397647		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366960	ENST00000263335		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366960	ENST00000429538		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366960	ENST00000263334		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366959	ENST00000348715		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366959	ENST00000397647		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366959	ENST00000263335		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366959	ENST00000429538		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000366959	ENST00000263334		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543354	ENST00000348715		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543354	ENST00000397647		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543354	ENST00000263335		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543354	ENST00000429538		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000543354	ENST00000263334		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000490299	ENST00000348715		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000490299	ENST00000397647		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000490299	ENST00000263335		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000490299	ENST00000429538		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
intron-intron	ENST00000490299	ENST00000263334		ChiTaRS3.1			DN917747	RPS6KC1	chr1	213300090	-	PAX8	chr2	113996932	+
5CDS-intron	ENST00000367545	ENST00000515518		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
5CDS-intron	ENST00000367545	ENST00000429839		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
5CDS-intron	ENST00000367545	ENST00000455884		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000367526	ENST00000515518		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000367526	ENST00000429839		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000367526	ENST00000455884		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000480333	ENST00000515518		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000480333	ENST00000429839		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-intron	ENST00000480333	ENST00000455884		ChiTaRS3.1			BF750097	UTRN	chr6	144876021	+	TMEM232	chr5	110036334	-
intron-3UTR	ENST00000450966	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000450966	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000450966	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000450966	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000450966	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000450966	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000251722	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000251722	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000251722	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000251722	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000251722	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000251722	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000427112	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000427112	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000427112	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000427112	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000427112	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000427112	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000496298	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000496298	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000496298	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000496298	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000496298	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000496298	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000409945	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000409945	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000409945	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000409945	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000409945	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000409945	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000443711	ENST00000450966		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-3UTR	ENST00000443711	ENST00000251722		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000443711	ENST00000427112		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000443711	ENST00000496298		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000443711	ENST00000409945		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
intron-intron	ENST00000443711	ENST00000443711		ChiTaRS3.1			BG326507	USP40	chr2	234385185	-	USP40	chr2	234385976	-
In-frame	ENST00000379388	ENST00000367723		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
In-frame	ENST00000379388	ENST00000608151		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
Frame-shit	ENST00000379388	ENST00000610051		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
In-frame	ENST00000379388	ENST00000263688		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000484210	ENST00000367723		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000484210	ENST00000608151		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000484210	ENST00000610051		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000484210	ENST00000263688		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000541134	ENST00000367723		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000541134	ENST00000608151		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000541134	ENST00000610051		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
intron-3CDS	ENST00000541134	ENST00000263688		ChiTaRS3.1			BE006447	HIVEP1	chr6	12121904	-	SUCO	chr1	172579038	-
3UTR-3UTR	ENST00000297268	ENST00000297268		ChiTaRS3.1			AW020607	COL1A2	chr7	94060014	-	COL1A2	chr7	94060125	+
intron-3UTR	ENST00000394236	ENST00000331872		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000394236	ENST00000417584		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000394236	ENST00000311223		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-5UTR	ENST00000394236	ENST00000491322		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000394236	ENST00000339526		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000407433	ENST00000331872		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000407433	ENST00000417584		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000407433	ENST00000311223		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-5UTR	ENST00000407433	ENST00000491322		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
intron-3UTR	ENST00000407433	ENST00000339526		ChiTaRS3.1			AW579277	PROS1	chr3	93678727	-	GLUL	chr1	182353484	+
3UTR-3UTR	ENST00000279873	ENST00000279873		ChiTaRS3.1			AW337747	ARID5B	chr10	63856469	-	ARID5B	chr10	63856380	+
3UTR-intron	ENST00000279873	ENST00000309334		ChiTaRS3.1			AW337747	ARID5B	chr10	63856469	-	ARID5B	chr10	63856380	+
intron-3UTR	ENST00000309334	ENST00000279873		ChiTaRS3.1			AW337747	ARID5B	chr10	63856469	-	ARID5B	chr10	63856380	+
intron-intron	ENST00000309334	ENST00000309334		ChiTaRS3.1			AW337747	ARID5B	chr10	63856469	-	ARID5B	chr10	63856380	+
intron-intron	ENST00000380027	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380027	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380027	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380027	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380027	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396855	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396855	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396855	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396855	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396855	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000305836	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000305836	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000305836	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000305836	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000305836	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380034	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380034	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380034	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380034	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000380034	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396847	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396847	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396847	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396847	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396847	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000483835	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000483835	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000483835	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000483835	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000483835	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396853	ENST00000066544		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396853	ENST00000531206		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396853	ENST00000446365		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396853	ENST00000527547		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000396853	ENST00000528748		ChiTaRS3.1			BF922027	TRIM5	chr11	5730976	+	CDC27	chr17	45232244	-
intron-intron	ENST00000263390	ENST00000278935		ChiTaRS3.1			BF885437	MED26	chr19	16664537	-	CEP164	chr11	117262190	-
intron-intron	ENST00000263390	ENST00000533706		ChiTaRS3.1			BF885437	MED26	chr19	16664537	-	CEP164	chr11	117262190	-
3UTR-3UTR	ENST00000283632	ENST00000534336		ChiTaRS3.1			W32517	RMND5A	chr2	87004587	-	MALAT1	chr11	65267943	-
intron-3UTR	ENST00000472843	ENST00000534336		ChiTaRS3.1			W32517	RMND5A	chr2	87004587	-	MALAT1	chr11	65267943	-
intron-3CDS	ENST00000519716	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000519716		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000252773		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000428389		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000551649		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000552293		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000550896		ChiTaRS3.1			BE767127	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
3UTR-3UTR	ENST00000521913	ENST00000375859		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
3UTR-intron	ENST00000521913	ENST00000541629		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
3UTR-intron	ENST00000521913	ENST00000469017		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
3UTR-3UTR	ENST00000311151	ENST00000375859		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
3UTR-intron	ENST00000311151	ENST00000541629		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
3UTR-intron	ENST00000311151	ENST00000469017		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-3UTR	ENST00000523027	ENST00000375859		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-intron	ENST00000523027	ENST00000541629		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-intron	ENST00000523027	ENST00000469017		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-3UTR	ENST00000521983	ENST00000375859		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-intron	ENST00000521983	ENST00000541629		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-intron	ENST00000521983	ENST00000469017		ChiTaRS3.1			AW889897	DPYSL2	chr8	26515291	-	SPIN1	chr9	91092895	+
intron-intron	ENST00000550385	ENST00000550385		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000550385	ENST00000229266		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000550385	ENST00000549872		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000229266	ENST00000550385		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000229266	ENST00000229266		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000229266	ENST00000549872		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000549872	ENST00000550385		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000549872	ENST00000229266		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
intron-intron	ENST00000549872	ENST00000549872		ChiTaRS3.1			AA668147	CHPT1	chr12	102099712	-	CHPT1	chr12	102100986	-
3UTR-intron	ENST00000281456	ENST00000392723		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000361398		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000271715		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000368863		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000409503		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000531094		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000540984		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
3UTR-intron	ENST00000281456	ENST00000491586		ChiTaRS3.1			N45527	SLC25A4	chr4	186068790	+	POGZ	chr1	151418993	-
intron-3CDS	ENST00000385297	ENST00000281924		ChiTaRS3.1			BE795957	MIR548A3	chr3	103927217	+	TMEM163	chr2	135309662	-
3UTR-3CDS	ENST00000374642	ENST00000374642		ChiTaRS3.1			BU727057	C1QA	chr1	22965911	-	C1QA	chr1	22965831	+
3UTR-3CDS	ENST00000374642	ENST00000402322		ChiTaRS3.1			BU727057	C1QA	chr1	22965911	-	C1QA	chr1	22965831	+
3UTR-3CDS	ENST00000402322	ENST00000374642		ChiTaRS3.1			BU727057	C1QA	chr1	22965911	-	C1QA	chr1	22965831	+
3UTR-3CDS	ENST00000402322	ENST00000402322		ChiTaRS3.1			BU727057	C1QA	chr1	22965911	-	C1QA	chr1	22965831	+
intron-intron	ENST00000356924	ENST00000252699		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000356924	ENST00000424234		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000356924	ENST00000390009		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000356924	ENST00000497637		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000298816	ENST00000252699		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000298816	ENST00000424234		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000298816	ENST00000390009		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000298816	ENST00000497637		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557554	ENST00000252699		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557554	ENST00000424234		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557554	ENST00000390009		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557554	ENST00000497637		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557588	ENST00000252699		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557588	ENST00000424234		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557588	ENST00000390009		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000557588	ENST00000497637		ChiTaRS3.1			BG001857	ABCD4	chr14	74767233	+	ACTN4	chr19	39161282	-
intron-intron	ENST00000340149	ENST00000340149		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000340149	ENST00000361507		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000340149	ENST00000526030		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000361507	ENST00000340149		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000361507	ENST00000361507		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000361507	ENST00000526030		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000526030	ENST00000340149		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000526030	ENST00000361507		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
intron-intron	ENST00000526030	ENST00000526030		ChiTaRS3.1			BF745067	GAB2	chr11	77931468	-	GAB2	chr11	77933012	+
Frame-shit	ENST00000377892	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377892	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377892	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377892	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377892	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377892	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377892	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377892	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377890	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377890	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377890	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377891	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377891	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377891	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000377889	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377889	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000377889	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000535296	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000535296	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000535296	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000338663	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000338663	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000338663	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3CDS	ENST00000538682	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3UTR	ENST00000538682	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
intron-3UTR	ENST00000538682	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000377892		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000377890		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000377891		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000377889		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000535296		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
Frame-shit	ENST00000536981	ENST00000338663		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000536981	ENST00000538682		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
5CDS-3UTR	ENST00000536981	ENST00000536981		ChiTaRS3.1			BG471247	SLC3A2	chr11	62656079	+	SLC3A2	chr11	62655606	+
In-frame	ENST00000373233	ENST00000373233		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
In-frame	ENST00000373233	ENST00000309279		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
In-frame	ENST00000373233	ENST00000373222		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
5CDS-intron	ENST00000373233	ENST00000480022		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
In-frame	ENST00000309279	ENST00000373233		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
In-frame	ENST00000309279	ENST00000309279		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
In-frame	ENST00000309279	ENST00000373222		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
5CDS-intron	ENST00000309279	ENST00000480022		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
Frame-shit	ENST00000373222	ENST00000373233		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
Frame-shit	ENST00000373222	ENST00000309279		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
Frame-shit	ENST00000373222	ENST00000373222		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
5CDS-intron	ENST00000373222	ENST00000480022		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
intron-3CDS	ENST00000480022	ENST00000373233		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
intron-3CDS	ENST00000480022	ENST00000309279		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
intron-3CDS	ENST00000480022	ENST00000373222		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
intron-intron	ENST00000480022	ENST00000480022		ChiTaRS3.1			AI312497	CHD6	chr20	40141485	-	CHD6	chr20	40143593	-
intron-3UTR	ENST00000298198	ENST00000298198		ChiTaRS3.1			AA665427	PGM2L1	chr11	74047348	-	PGM2L1	chr11	74047478	+
intron-3UTR	ENST00000380376	ENST00000453363		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
intron-3UTR	ENST00000380376	ENST00000316193		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
intron-3UTR	ENST00000380376	ENST00000329882		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
3UTR-3UTR	ENST00000340967	ENST00000453363		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
3UTR-3UTR	ENST00000340967	ENST00000316193		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
3UTR-3UTR	ENST00000340967	ENST00000329882		ChiTaRS3.1			BC092487	ACER2	chr9	19451624	+	CSH1	chr17	61972325	-
intron-3UTR	ENST00000333891	ENST00000369951		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-intron	ENST00000333891	ENST00000463296		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-3UTR	ENST00000423517	ENST00000369951		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-intron	ENST00000423517	ENST00000463296		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-3UTR	ENST00000437081	ENST00000369951		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-intron	ENST00000437081	ENST00000463296		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-3UTR	ENST00000426442	ENST00000369951		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-intron	ENST00000426442	ENST00000463296		ChiTaRS3.1			BM929847	PCLO	chr7	82450365	-	OPN1LW	chrX	153424466	+
intron-3UTR	ENST00000394071	ENST00000395290		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000358597		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000395292		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000310513		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000361904		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000394071	ENST00000539455		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000531165		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000532048		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000395290		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000358597		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000395292		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000310513		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000361904		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000286523	ENST00000539455		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000531165		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000532048		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000395290		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000358597		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000395292		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000310513		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000361904		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000486739	ENST00000539455		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000531165		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000532048		ChiTaRS3.1			BE819617	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000373710	ENST00000311956		ChiTaRS3.1			BM729027	SERINC2	chr1	31892388	+	ARHGAP1	chr11	46699262	-
intron-3UTR	ENST00000536859	ENST00000311956		ChiTaRS3.1			BM729027	SERINC2	chr1	31892388	+	ARHGAP1	chr11	46699262	-
intron-3UTR	ENST00000373709	ENST00000311956		ChiTaRS3.1			BM729027	SERINC2	chr1	31892388	+	ARHGAP1	chr11	46699262	-
intron-3UTR	ENST00000536384	ENST00000311956		ChiTaRS3.1			BM729027	SERINC2	chr1	31892388	+	ARHGAP1	chr11	46699262	-
intron-3UTR	ENST00000491976	ENST00000311956		ChiTaRS3.1			BM729027	SERINC2	chr1	31892388	+	ARHGAP1	chr11	46699262	-
intron-intron	ENST00000524630	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000524630	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529919	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399039	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000360682	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361796	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361391	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530094	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000428599	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000361332	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000527467	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000415361	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532245	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532463	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528232	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529986	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000531014	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000358694	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526772	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532787	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000533667	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529873	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000525902	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000529526	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532649	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000426142	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000532844	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000528621	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000399050	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526357	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000530748	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000534579	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000524630		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000529919		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000399039		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000360682		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000361796		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000361391		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000530094		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000428599		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000361332		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000527467		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000415361		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000532245		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000532463		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000528232		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000529986		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000531014		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000358694		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000526772		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000532787		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000533667		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000529873		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000525902		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000529526		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000532649		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000426142		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000532844		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000528621		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000399050		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000526357		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000530748		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000534579		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000526938	ENST00000526938		ChiTaRS3.1			AW992887	CTNND1	chr11	57550469	+	CTNND1	chr11	57545005	+
intron-intron	ENST00000367879	ENST00000367879		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000367879	ENST00000372212		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000367879	ENST00000462329		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000367879	ENST00000469256		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000367879	ENST00000470820		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000372212	ENST00000367879		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000372212	ENST00000372212		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000372212	ENST00000462329		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000372212	ENST00000469256		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000372212	ENST00000470820		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000462329	ENST00000367879		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000462329	ENST00000372212		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000462329	ENST00000462329		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000462329	ENST00000469256		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000462329	ENST00000470820		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000469256	ENST00000367879		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000469256	ENST00000372212		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000469256	ENST00000462329		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000469256	ENST00000469256		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000469256	ENST00000470820		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000470820	ENST00000367879		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000470820	ENST00000372212		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000470820	ENST00000462329		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000470820	ENST00000469256		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000470820	ENST00000470820		ChiTaRS3.1			BF366807	UCK2	chr1	165820357	-	UCK2	chr1	165827810	-
intron-intron	ENST00000218652	ENST00000421797		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000218652	ENST00000429546		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000218652	ENST00000352689		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000218652	ENST00000498778		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000494647	ENST00000421797		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000494647	ENST00000429546		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000494647	ENST00000352689		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-intron	ENST00000494647	ENST00000498778		ChiTaRS3.1			AA563877	NDFIP2	chr13	80094192	-	MKLN1	chr7	131127057	-
intron-3CDS	ENST00000377107	ENST00000377107		ChiTaRS3.1			AW849407	USP11	chrX	47099037	-	USP11	chrX	47101632	-
intron-3CDS	ENST00000377107	ENST00000218348		ChiTaRS3.1			AW849407	USP11	chrX	47099037	-	USP11	chrX	47101632	-
intron-3CDS	ENST00000218348	ENST00000377107		ChiTaRS3.1			AW849407	USP11	chrX	47099037	-	USP11	chrX	47101632	-
intron-3CDS	ENST00000218348	ENST00000218348		ChiTaRS3.1			AW849407	USP11	chrX	47099037	-	USP11	chrX	47101632	-
intron-5UTR	ENST00000476532	ENST00000295897		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-5UTR	ENST00000476532	ENST00000415165		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-intron	ENST00000476532	ENST00000503124		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-intron	ENST00000476532	ENST00000509063		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-intron	ENST00000476532	ENST00000401494		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-intron	ENST00000476532	ENST00000505649		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-5UTR	ENST00000356892	ENST00000295897		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-5UTR	ENST00000356892	ENST00000415165		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-intron	ENST00000356892	ENST00000503124		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-intron	ENST00000356892	ENST00000509063		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-intron	ENST00000356892	ENST00000401494		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
3UTR-intron	ENST00000356892	ENST00000505649		ChiTaRS3.1			AI133207	SASH3	chrX	128929090	-	ALB	chr4	74270004	+
intron-intron	ENST00000363840	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363840	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363840	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000365524	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000365524	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000365524	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364822	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364822	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364822	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363859	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363859	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363859	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000385578	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000385578	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000385578	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363146	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363146	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000363146	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364084	ENST00000380649		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364084	ENST00000457468		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-intron	ENST00000364084	ENST00000461025		ChiTaRS3.1			BF804747	GAS5	chr1	173833812	-	HADHA	chr2	26462671	-
intron-3CDS	ENST00000344577	ENST00000344577		ChiTaRS3.1			AA483957	LIPI	chr21	15561521	-	LIPI	chr21	15561461	+
intron-3CDS	ENST00000344577	ENST00000536861		ChiTaRS3.1			AA483957	LIPI	chr21	15561521	-	LIPI	chr21	15561461	+
intron-3CDS	ENST00000536861	ENST00000344577		ChiTaRS3.1			AA483957	LIPI	chr21	15561521	-	LIPI	chr21	15561461	+
intron-3CDS	ENST00000536861	ENST00000536861		ChiTaRS3.1			AA483957	LIPI	chr21	15561521	-	LIPI	chr21	15561461	+
intron-3CDS	ENST00000336034	ENST00000528282		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000530481		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000445890		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000337057		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000530757		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000392427		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000368128		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000527411		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000524581		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000525271		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000525193		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000527659		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000529208		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000336034	ENST00000531410		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-intron	ENST00000336034	ENST00000530148		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000528282		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000530481		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000445890		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000337057		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000530757		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000392427		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000368128		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000527411		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000524581		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000525271		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000525193		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000527659		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000529208		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000595337	ENST00000531410		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-intron	ENST00000595337	ENST00000530148		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000528282		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000530481		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000445890		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000337057		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000530757		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000392427		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000368128		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000527411		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000524581		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000525271		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000525193		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000527659		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000529208		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000593804	ENST00000531410		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-intron	ENST00000593804	ENST00000530148		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000528282		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000530481		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000445890		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000337057		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000530757		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000392427		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000368128		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000527411		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000524581		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000525271		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000525193		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000527659		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000529208		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000596251	ENST00000531410		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-intron	ENST00000596251	ENST00000530148		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000528282		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000530481		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000445890		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000337057		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000530757		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000392427		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000368128		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000527411		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000524581		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000525271		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000525193		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000527659		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000529208		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-3CDS	ENST00000598727	ENST00000531410		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
intron-intron	ENST00000598727	ENST00000530148		ChiTaRS3.1			BF241187	DEDD2	chr19	42703616	-	EPB41L2	chr6	131179293	-
3UTR-5UTR	ENST00000415430	ENST00000531188		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000415430	ENST00000530164		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000278572		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000534440		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000527446		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000526608		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000524851		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000529285		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000531188		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000530164		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000278572		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000534440		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000527446		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000526608		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000524851		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000529285		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000531188		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000530164		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000278572		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000534440		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000527446		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000526608		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000524851		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000529285		ChiTaRS3.1			BM856177	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000358901	ENST00000591778		ChiTaRS3.1			BI041997	VCP	chr9	35057394	+	LGALS3BP	chr17	76969222	-
intron-intron	ENST00000358901	ENST00000262776		ChiTaRS3.1			BI041997	VCP	chr9	35057394	+	LGALS3BP	chr17	76969222	-
intron-intron	ENST00000358901	ENST00000585407		ChiTaRS3.1			BI041997	VCP	chr9	35057394	+	LGALS3BP	chr17	76969222	-
intron-3UTR	ENST00000433477	ENST00000433477		ChiTaRS3.1			H24177	CTSO	chr4	156846742	+	CTSO	chr4	156846708	-
intron-intron	ENST00000357393	ENST00000268251		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000357393	ENST00000396600		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000357393	ENST00000563215		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000357393	ENST00000567812		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000357393	ENST00000425191		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000357393	ENST00000569156		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000268251		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000396600		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000563215		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000567812		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000425191		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000370001	ENST00000569156		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000268251		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000396600		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000563215		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000567812		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000425191		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000477908	ENST00000569156		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000268251		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000396600		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000563215		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000567812		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000425191		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369994	ENST00000569156		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000268251		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000396600		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000563215		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000567812		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000425191		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-intron	ENST00000369995	ENST00000569156		ChiTaRS3.1			BF923967	AKNAD1	chr1	109465171	+	ABAT	chr16	8840013	-
intron-5UTR	ENST00000279550	ENST00000433647		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000279550	ENST00000543411		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000279550	ENST00000438259		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000279550	ENST00000325123		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000279550	ENST00000473575		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-5UTR	ENST00000228251	ENST00000433647		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000228251	ENST00000543411		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000228251	ENST00000438259		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000228251	ENST00000325123		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000228251	ENST00000473575		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-5UTR	ENST00000546164	ENST00000433647		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000546164	ENST00000543411		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000546164	ENST00000438259		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000546164	ENST00000325123		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
intron-intron	ENST00000546164	ENST00000473575		ChiTaRS3.1			X77777	YBX3	chr12	10875912	+	VIPR1	chr3	42555258	+
3UTR-3UTR	ENST00000561234	ENST00000561234		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000416165		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000560846		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000561234		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000416165		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000560846		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000561234		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000416165		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000560846		ChiTaRS3.1			T75317	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
intron-intron	ENST00000360467	ENST00000360467		ChiTaRS3.1			BF921767	COL4A2	chr13	111125827	+	COL4A2	chr13	111121669	+
intron-intron	ENST00000360467	ENST00000462309		ChiTaRS3.1			BF921767	COL4A2	chr13	111125827	+	COL4A2	chr13	111121669	+
intron-intron	ENST00000462309	ENST00000360467		ChiTaRS3.1			BF921767	COL4A2	chr13	111125827	+	COL4A2	chr13	111121669	+
intron-intron	ENST00000462309	ENST00000462309		ChiTaRS3.1			BF921767	COL4A2	chr13	111125827	+	COL4A2	chr13	111121669	+
intron-3UTR	ENST00000220597	ENST00000442123		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-3UTR	ENST00000220597	ENST00000354586		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-3UTR	ENST00000220597	ENST00000556861		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-3UTR	ENST00000523463	ENST00000442123		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-3UTR	ENST00000523463	ENST00000354586		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-3UTR	ENST00000523463	ENST00000556861		ChiTaRS3.1			BF691397	PAG1	chr8	81882643	-	STYX	chr14	53240340	+
intron-intron	ENST00000285238	ENST00000285238		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000515707		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000427699		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000510891		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000285238		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000515707		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000427699		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000510891		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000285238		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000515707		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000427699		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000510891		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000285238		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000515707		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000427699		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000510891		ChiTaRS3.1			AI905457	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-3UTR	ENST00000509479	ENST00000409304		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000509479	ENST00000258405		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000509479	ENST00000409840		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-intron	ENST00000509479	ENST00000447280		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000327122	ENST00000409304		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000327122	ENST00000258405		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000327122	ENST00000409840		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-intron	ENST00000327122	ENST00000447280		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000398940	ENST00000409304		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000398940	ENST00000258405		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-3UTR	ENST00000398940	ENST00000409840		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-intron	ENST00000398940	ENST00000447280		ChiTaRS3.1			U80747	MAML3	chr4	140810079	-	SERPINE2	chr2	224839994	+
intron-intron	ENST00000381154	ENST00000302692		ChiTaRS3.1			BE939757	ARSD	chrX	2822988	-	SLC25A33	chr1	9630123	+
intron-intron	ENST00000217890	ENST00000302692		ChiTaRS3.1			BE939757	ARSD	chrX	2822988	-	SLC25A33	chr1	9630123	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW421327	MALAT1	chr11	65268470	+	MALAT1	chr11	65266695	+
intron-intron	ENST00000336278	ENST00000266529		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-intron	ENST00000336278	ENST00000552673		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-intron	ENST00000336278	ENST00000551102		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-intron	ENST00000528525	ENST00000266529		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-intron	ENST00000528525	ENST00000552673		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-intron	ENST00000528525	ENST00000551102		ChiTaRS3.1			AI922257	SNTB2	chr16	69298590	-	ZCRB1	chr12	42707677	+
intron-3CDS	ENST00000337963	ENST00000383693		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
intron-3CDS	ENST00000337963	ENST00000489752		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
intron-3CDS	ENST00000382907	ENST00000383693		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
intron-3CDS	ENST00000382907	ENST00000489752		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
intron-3CDS	ENST00000382905	ENST00000383693		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
intron-3CDS	ENST00000382905	ENST00000489752		ChiTaRS3.1			BP326227	ZMYM5	chr13	20426142	-	LNP1	chr3	100148586	+
3UTR-3UTR	ENST00000328195	ENST00000328195		ChiTaRS3.1			AA720757	PROSC	chr8	37635788	+	PROSC	chr8	37635896	-
intron-intron	ENST00000523492	ENST00000523492		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000523492	ENST00000286234		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000523492	ENST00000518057		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000523492		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000286234		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000518057		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000523492		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000286234		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000518057		ChiTaRS3.1			AU122377	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-3UTR	ENST00000368226	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368226	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368226	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368226	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368226	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368226	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368226	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368226	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368226	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368227	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368227	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368227	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368227	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000532331	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000532331	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000532331	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000532331	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368213	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368213	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368213	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368213	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368210	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368210	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368210	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368210	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368215	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368215	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368215	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368215	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000368207	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368207	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368207	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000368207	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000524481	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000524481	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000524481	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000524481	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000368226		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000368227		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000532331		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000368213		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000368210		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-3UTR	ENST00000525459	ENST00000368215		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000525459	ENST00000368207		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000525459	ENST00000524481		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000525459	ENST00000525459		ChiTaRS3.1			AW892887	PTPRK	chr6	128291013	-	PTPRK	chr6	128291150	+
intron-intron	ENST00000341029	ENST00000360029		ChiTaRS3.1			AI918477	ART3	chr4	76942370	-	KCTD8	chr4	44256891	+
intron-intron	ENST00000355810	ENST00000360029		ChiTaRS3.1			AI918477	ART3	chr4	76942370	-	KCTD8	chr4	44256891	+
intron-intron	ENST00000349321	ENST00000360029		ChiTaRS3.1			AI918477	ART3	chr4	76942370	-	KCTD8	chr4	44256891	+
intron-intron	ENST00000513494	ENST00000360029		ChiTaRS3.1			AI918477	ART3	chr4	76942370	-	KCTD8	chr4	44256891	+
5CDS-intron	ENST00000271277	ENST00000334801		ChiTaRS3.1			BF823097	CTTNBP2NL	chr1	112999857	+	BCL9L	chr11	118779577	+
5CDS-intron	ENST00000271277	ENST00000526143		ChiTaRS3.1			BF823097	CTTNBP2NL	chr1	112999857	+	BCL9L	chr11	118779577	+
3UTR-intron	ENST00000607039	ENST00000334801		ChiTaRS3.1			BF823097	CTTNBP2NL	chr1	112999857	+	BCL9L	chr11	118779577	+
3UTR-intron	ENST00000607039	ENST00000526143		ChiTaRS3.1			BF823097	CTTNBP2NL	chr1	112999857	+	BCL9L	chr11	118779577	+
intron-5UTR	ENST00000370935	ENST00000216185		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000370935	ENST00000416967		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000370935	ENST00000487725		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-intron	ENST00000370935	ENST00000403313		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000394363	ENST00000216185		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000394363	ENST00000416967		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000394363	ENST00000487725		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-intron	ENST00000394363	ENST00000403313		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000338144	ENST00000216185		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000338144	ENST00000416967		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000338144	ENST00000487725		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-intron	ENST00000338144	ENST00000403313		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000492263	ENST00000216185		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000492263	ENST00000416967		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000492263	ENST00000487725		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-intron	ENST00000492263	ENST00000403313		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000370927	ENST00000216185		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000370927	ENST00000416967		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-5UTR	ENST00000370927	ENST00000487725		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
intron-intron	ENST00000370927	ENST00000403313		ChiTaRS3.1			AK130187	ENOX2	chrX	130028784	-	TXN2	chr22	36877681	-
5CDS-3UTR	ENST00000379312	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000379312	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000379312	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000379312	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000379312	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000379312	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000379312	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000379312	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000379312	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000379312	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-intron	ENST00000566522	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-intron	ENST00000566522	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-intron	ENST00000566522	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-intron	ENST00000566522	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000566522	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000042381	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000042381	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000042381	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000042381	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000042381	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000540839	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000540839	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000540839	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000540839	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000540839	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000422602	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000422602	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000422602	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000422602	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000422602	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000401886		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000428437	ENST00000447208		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000398042		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000432883		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000327374		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000428437	ENST00000479679		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000401833		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000428437	ENST00000434570		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-intron	ENST00000428437	ENST00000420290		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
5CDS-3UTR	ENST00000428437	ENST00000456048		ChiTaRS3.1			BF818317	FAM65A	chr16	67575632	-	TANGO2	chr22	20052681	+
intron-3UTR	ENST00000328823	ENST00000247161		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000328823	ENST00000592066		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000328823	ENST00000376983		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000328823	ENST00000343894		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000328823	ENST00000468956		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000461730	ENST00000247161		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000461730	ENST00000592066		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000461730	ENST00000376983		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000461730	ENST00000343894		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000461730	ENST00000468956		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000543212	ENST00000247161		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000543212	ENST00000592066		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000543212	ENST00000376983		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000543212	ENST00000343894		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-intron	ENST00000543212	ENST00000468956		ChiTaRS3.1			AA704837	WBP2NL	chr22	42448139	+	ELK1	chrX	47496161	+
intron-3UTR	ENST00000329152	ENST00000299427		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-3UTR	ENST00000329152	ENST00000533371		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000329152	ENST00000534644		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000329152	ENST00000528657		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-3UTR	ENST00000360342	ENST00000299427		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-3UTR	ENST00000360342	ENST00000533371		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000360342	ENST00000534644		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000360342	ENST00000528657		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-3UTR	ENST00000337576	ENST00000299427		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-3UTR	ENST00000337576	ENST00000533371		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000337576	ENST00000534644		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000337576	ENST00000528657		ChiTaRS3.1			AA367977	LZTS3	chr20	3143315	-	TPP1	chr11	6635271	+
intron-intron	ENST00000240055	ENST00000420323		ChiTaRS3.1			AL043727	NFYB	chr12	104511290	+	DNAH1	chr3	52354900	-
intron-intron	ENST00000240055	ENST00000466628		ChiTaRS3.1			AL043727	NFYB	chr12	104511290	+	DNAH1	chr3	52354900	-
intron-intron	ENST00000551727	ENST00000420323		ChiTaRS3.1			AL043727	NFYB	chr12	104511290	+	DNAH1	chr3	52354900	-
intron-intron	ENST00000551727	ENST00000466628		ChiTaRS3.1			AL043727	NFYB	chr12	104511290	+	DNAH1	chr3	52354900	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835157	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
5CDS-3UTR	ENST00000373585	ENST00000469172		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000265866		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000441000		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
5CDS-3UTR	ENST00000373585	ENST00000354695		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000469172		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000265866		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000441000		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-3UTR	ENST00000466265	ENST00000354695		ChiTaRS3.1			DB107257	DDX50	chr10	70661227	+	HNRNPH3	chr10	70100929	+
intron-intron	ENST00000569482	ENST00000314138		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000531978		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000524496		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000532359		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000530022		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000526562		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000530913		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000569482	ENST00000531102		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000314138		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000531978		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000524496		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000532359		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000530022		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000526562		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000530913		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000565683	ENST00000531102		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000314138		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000531978		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000524496		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000532359		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000530022		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000526562		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000530913		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563622	ENST00000531102		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000314138		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000531978		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000524496		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000532359		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000530022		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000526562		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000530913		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000267978	ENST00000531102		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000314138		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000531978		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000524496		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000532359		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000530022		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000526562		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000530913		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-intron	ENST00000563539	ENST00000531102		ChiTaRS3.1			CR936817	MAN2C1	chr15	75650091	-	RPL27A	chr11	8705338	+
intron-3CDS	ENST00000534358	ENST00000534358		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000534358	ENST00000389506		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000534358	ENST00000354520		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000389506	ENST00000534358		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000389506	ENST00000389506		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000389506	ENST00000354520		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000354520	ENST00000534358		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000354520	ENST00000389506		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000354520	ENST00000354520		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			DB147747	KMT2A	chr11	118391992	+	KMT2A	chr11	118372433	+
intron-3UTR	ENST00000361217	ENST00000407721		ChiTaRS3.1			BI038607	DENND4B	chr1	153915466	+	DHCR7	chr11	71146088	-
intron-3UTR	ENST00000361217	ENST00000355527		ChiTaRS3.1			BI038607	DENND4B	chr1	153915466	+	DHCR7	chr11	71146088	-
intron-3UTR	ENST00000474386	ENST00000407721		ChiTaRS3.1			BI038607	DENND4B	chr1	153915466	+	DHCR7	chr11	71146088	-
intron-3UTR	ENST00000474386	ENST00000355527		ChiTaRS3.1			BI038607	DENND4B	chr1	153915466	+	DHCR7	chr11	71146088	-
intron-3CDS	ENST00000434748	ENST00000394375		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000434748	ENST00000608620		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000434748	ENST00000238983		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000434748	ENST00000355843		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000261673	ENST00000394375		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000261673	ENST00000608620		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000261673	ENST00000238983		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000261673	ENST00000355843		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000542061	ENST00000394375		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000542061	ENST00000608620		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000542061	ENST00000238983		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-3CDS	ENST00000542061	ENST00000355843		ChiTaRS3.1			AW867927	FBRSL1	chr12	133073669	+	LIPF	chr10	90435973	+
intron-intron	ENST00000447054	ENST00000544246		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000447054	ENST00000377865		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000447054	ENST00000456367		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000447054	ENST00000328454		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000447054	ENST00000377861		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000265022	ENST00000544246		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000265022	ENST00000377865		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000265022	ENST00000456367		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000265022	ENST00000328454		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000265022	ENST00000377861		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000344484	ENST00000544246		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000344484	ENST00000377865		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000344484	ENST00000456367		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000344484	ENST00000328454		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000344484	ENST00000377861		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000382164	ENST00000544246		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000382164	ENST00000377865		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000382164	ENST00000456367		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000382164	ENST00000328454		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000382164	ENST00000377861		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000544847	ENST00000544246		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000544847	ENST00000377865		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000544847	ENST00000456367		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000544847	ENST00000328454		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000544847	ENST00000377861		ChiTaRS3.1			BF921517	DGKG	chr3	185996755	-	PCDH9	chr13	67661592	-
intron-intron	ENST00000174618	ENST00000368911		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000323817		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000413605		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000497709		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000368911		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000323817		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000413605		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000497709		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000368911		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000323817		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000413605		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000497709		ChiTaRS3.1			AI244697	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000300030	ENST00000401884		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000300030	ENST00000342631		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000300030	ENST00000405547		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000300030	ENST00000310397		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000300030	ENST00000469006		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000558779	ENST00000401884		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000558779	ENST00000342631		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000558779	ENST00000405547		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000558779	ENST00000310397		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000558779	ENST00000469006		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000380290	ENST00000401884		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000380290	ENST00000342631		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000380290	ENST00000405547		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000380290	ENST00000310397		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000380290	ENST00000469006		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000557835	ENST00000401884		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000557835	ENST00000342631		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000557835	ENST00000405547		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000557835	ENST00000310397		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000557835	ENST00000469006		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000559950	ENST00000401884		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000559950	ENST00000342631		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000559950	ENST00000405547		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000559950	ENST00000310397		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000559950	ENST00000469006		ChiTaRS3.1			BG191637	FAM96A	chr15	64364790	-	SNED1	chr2	242000601	+
intron-intron	ENST00000541405	ENST00000327581		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-intron	ENST00000541405	ENST00000497526		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-intron	ENST00000302450	ENST00000327581		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-intron	ENST00000302450	ENST00000497526		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-intron	ENST00000481732	ENST00000327581		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-intron	ENST00000481732	ENST00000497526		ChiTaRS3.1			BI032097	CKAP2L	chr2	113504034	-	NT5DC4	chr2	113498541	+
intron-3UTR	ENST00000370466	ENST00000360214		ChiTaRS3.1			AI280597	GBP2	chr1	89573851	+	ETS2	chr21	40195129	-
intron-3UTR	ENST00000370466	ENST00000360938		ChiTaRS3.1			AI280597	GBP2	chr1	89573851	+	ETS2	chr21	40195129	-
intron-3UTR	ENST00000463660	ENST00000360214		ChiTaRS3.1			AI280597	GBP2	chr1	89573851	+	ETS2	chr21	40195129	-
intron-3UTR	ENST00000463660	ENST00000360938		ChiTaRS3.1			AI280597	GBP2	chr1	89573851	+	ETS2	chr21	40195129	-
intron-intron	ENST00000338316	ENST00000253363		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000361162		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000528062		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000407261		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000397370		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000338316	ENST00000463098		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000253363		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000361162		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000528062		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000407261		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000397370		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000537121	ENST00000463098		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000253363		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000361162		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000528062		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000407261		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000397370		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000513693	ENST00000463098		ChiTaRS3.1			AI807187	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000354532	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000354532	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000354532	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000354532	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000354532	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000354532	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000599846	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000596957	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000347545	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000378152	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000266041		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000346281		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000485816		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000406595		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000434759		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000337665	ENST00000467462		ChiTaRS3.1			DA281687	ARHGEF1	chr19	42392102	+	ITIH4	chr3	52854022	-
intron-intron	ENST00000262428	ENST00000379312		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000262428	ENST00000566522		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000262428	ENST00000042381		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000262428	ENST00000540839		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000262428	ENST00000422602		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000262428	ENST00000428437		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000379312		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000566522		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000042381		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000540839		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000422602		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000567278	ENST00000428437		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000379312		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000566522		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000042381		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000540839		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000422602		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000564057	ENST00000428437		ChiTaRS3.1			BF929177	COTL1	chr16	84600284	-	FAM65A	chr16	67574653	+
intron-intron	ENST00000358763	ENST00000358763		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000358763	ENST00000332840		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000358763	ENST00000467095		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000332840	ENST00000358763		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000332840	ENST00000332840		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000332840	ENST00000467095		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000467095	ENST00000358763		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000467095	ENST00000332840		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000467095	ENST00000467095		ChiTaRS3.1			BX955227	SYN3	chr22	33255539	-	SYN3	chr22	33254055	+
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN918887	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000290378	ENST00000341119		ChiTaRS3.1			N86827	ACTC1	chr15	35083565	-	SLC25A40	chr7	87470461	-
intron-intron	ENST00000557860	ENST00000341119		ChiTaRS3.1			N86827	ACTC1	chr15	35083565	-	SLC25A40	chr7	87470461	-
intron-intron	ENST00000308482	ENST00000308482		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-intron	ENST00000308482	ENST00000468950		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000308482	ENST00000289175		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000308482	ENST00000244815		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000308482	ENST00000392000		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-intron	ENST00000468950	ENST00000308482		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-intron	ENST00000468950	ENST00000468950		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000468950	ENST00000289175		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000468950	ENST00000244815		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
intron-3UTR	ENST00000468950	ENST00000392000		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000289175	ENST00000308482		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000289175	ENST00000468950		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000289175	ENST00000289175		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000289175	ENST00000244815		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000289175	ENST00000392000		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000244815	ENST00000308482		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000244815	ENST00000468950		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000244815	ENST00000289175		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000244815	ENST00000244815		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000244815	ENST00000392000		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000392000	ENST00000308482		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-intron	ENST00000392000	ENST00000468950		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000392000	ENST00000289175		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000392000	ENST00000244815		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-3UTR	ENST00000392000	ENST00000392000		ChiTaRS3.1			CA944747	LRRFIP1	chr2	238672032	-	LRRFIP1	chr2	238672887	-
5CDS-5UTR	ENST00000300850	ENST00000295901		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000300850	ENST00000492933		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-intron	ENST00000300850	ENST00000394431		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000300850	ENST00000482510		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000295901		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000492933		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-intron	ENST00000394979	ENST00000394431		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000482510		ChiTaRS3.1			CD626167	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
intron-intron	ENST00000392676	ENST00000375587		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000392676	ENST00000375579		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000392676	ENST00000375576		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000392677	ENST00000375587		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000392677	ENST00000375579		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000392677	ENST00000375576		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000588877	ENST00000375587		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000588877	ENST00000375579		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000588877	ENST00000375576		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000589609	ENST00000375587		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000589609	ENST00000375579		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
intron-intron	ENST00000589609	ENST00000375576		ChiTaRS3.1			DW428607	ABCA5	chr17	67262923	-	CENPP	chr9	95298697	+
3UTR-3CDS	ENST00000373030	ENST00000373030		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3CDS	ENST00000373030	ENST00000373039		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3UTR	ENST00000373030	ENST00000471199		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3CDS	ENST00000373039	ENST00000373030		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3CDS	ENST00000373039	ENST00000373039		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3UTR	ENST00000373039	ENST00000471199		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3CDS	ENST00000471199	ENST00000373030		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3CDS	ENST00000471199	ENST00000373039		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
3UTR-3UTR	ENST00000471199	ENST00000471199		ChiTaRS3.1			CA450177	IFT52	chr20	42275742	-	IFT52	chr20	42271211	+
Frame-shit	ENST00000322652	ENST00000322652		ChiTaRS3.1			AW369467	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000322652	ENST00000580398		ChiTaRS3.1			AW369467	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000580398	ENST00000322652		ChiTaRS3.1			AW369467	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000580398	ENST00000580398		ChiTaRS3.1			AW369467	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
intron-3UTR	ENST00000334126	ENST00000244745		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000334126	ENST00000543472		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000313663	ENST00000244745		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000313663	ENST00000543472		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000542452	ENST00000244745		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000542452	ENST00000543472		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-3UTR	ENST00000539061	ENST00000244745		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
intron-intron	ENST00000539061	ENST00000543472		ChiTaRS3.1			AK091397	C2CD3	chr11	73753123	-	SOX4	chr6	21597111	+
5UTR-3CDS	ENST00000381980	ENST00000381980		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
5UTR-intron	ENST00000381980	ENST00000508175		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
5UTR-intron	ENST00000381980	ENST00000284437		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
5UTR-3CDS	ENST00000508175	ENST00000381980		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
5UTR-intron	ENST00000508175	ENST00000508175		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
5UTR-intron	ENST00000508175	ENST00000284437		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
intron-3CDS	ENST00000284437	ENST00000381980		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
intron-intron	ENST00000284437	ENST00000508175		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
intron-intron	ENST00000284437	ENST00000284437		ChiTaRS3.1			BG011027	C4orf19	chr4	37455621	-	C4orf19	chr4	37592483	-
intron-intron	ENST00000542955	ENST00000542955		ChiTaRS3.1			AI750907	IGFBP4	chr17	38613459	+	IGFBP4	chr17	38613586	-
intron-3UTR	ENST00000542955	ENST00000269593		ChiTaRS3.1			AI750907	IGFBP4	chr17	38613459	+	IGFBP4	chr17	38613586	-
3UTR-intron	ENST00000269593	ENST00000542955		ChiTaRS3.1			AI750907	IGFBP4	chr17	38613459	+	IGFBP4	chr17	38613586	-
3UTR-3UTR	ENST00000269593	ENST00000269593		ChiTaRS3.1			AI750907	IGFBP4	chr17	38613459	+	IGFBP4	chr17	38613586	-
In-frame	ENST00000457030	ENST00000457030		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
In-frame	ENST00000457030	ENST00000330010		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000457030	ENST00000294624		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000457030	ENST00000334785		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000457030	ENST00000480732		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
In-frame	ENST00000330010	ENST00000457030		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
In-frame	ENST00000330010	ENST00000330010		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000330010	ENST00000294624		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000330010	ENST00000334785		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000330010	ENST00000480732		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-3CDS	ENST00000294624	ENST00000457030		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-3CDS	ENST00000294624	ENST00000330010		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-intron	ENST00000294624	ENST00000294624		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-intron	ENST00000294624	ENST00000334785		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-intron	ENST00000294624	ENST00000480732		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
In-frame	ENST00000334785	ENST00000457030		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
In-frame	ENST00000334785	ENST00000330010		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000334785	ENST00000294624		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000334785	ENST00000334785		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
5CDS-intron	ENST00000334785	ENST00000480732		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
3UTR-3CDS	ENST00000480732	ENST00000457030		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
3UTR-3CDS	ENST00000480732	ENST00000330010		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
3UTR-intron	ENST00000480732	ENST00000294624		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
3UTR-intron	ENST00000480732	ENST00000334785		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
3UTR-intron	ENST00000480732	ENST00000480732		ChiTaRS3.1			CD299407	NEXN	chr1	78399146	+	NEXN	chr1	78395048	+
intron-intron	ENST00000367042	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000367042	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367042	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000354848	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000354848	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000441839	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000441839	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000322875	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322875	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000367041	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367041	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000358170	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000358170	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000322918	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000322918	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000361067	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000361067	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000367047	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000367047	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000357714	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000357714	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-3UTR	ENST00000469535	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
3UTR-intron	ENST00000469535	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000360212	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000360212	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000367042		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000354848		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000441839		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000322875		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000367041		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000358170		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000322918		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000361067		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000367047		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000357714		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-3UTR	ENST00000480003	ENST00000469535		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000360212		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000480003	ENST00000480003		ChiTaRS3.1			CN312837	CD46	chr1	207940580	-	CD46	chr1	207940649	+
intron-intron	ENST00000493368	ENST00000379509		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000493368	ENST00000319406		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000493368	ENST00000491680		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000493368	ENST00000359433		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000493368	ENST00000309052		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000493368	ENST00000540623		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000379509		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000319406		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000491680		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000359433		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000309052		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
3UTR-intron	ENST00000318158	ENST00000540623		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000379509		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000319406		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000491680		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000359433		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000309052		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-intron	ENST00000607784	ENST00000540623		ChiTaRS3.1			AI924257	GRHPR	chr9	37436841	-	LCLAT1	chr2	30671359	-
intron-3CDS	ENST00000452825	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000452825	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375401	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375401	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000404049	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000404049	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375379	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375379	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375383	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000375383	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000465402	ENST00000225698		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
intron-3CDS	ENST00000465402	ENST00000574444		ChiTaRS3.1			BQ323647	KDM5C	chrX	53221850	+	C1QBP	chr17	5337043	-
3UTR-3UTR	ENST00000229268	ENST00000373795		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
3UTR-intron	ENST00000229268	ENST00000546138		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
3UTR-intron	ENST00000229268	ENST00000466448		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
3UTR-3UTR	ENST00000389231	ENST00000373795		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
3UTR-intron	ENST00000389231	ENST00000546138		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
3UTR-intron	ENST00000389231	ENST00000466448		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
intron-3UTR	ENST00000541969	ENST00000373795		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
intron-intron	ENST00000541969	ENST00000546138		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
intron-intron	ENST00000541969	ENST00000466448		ChiTaRS3.1			CA450247	USP5	chr12	6975691	-	SRSF4	chr1	29474453	-
5CDS-5UTR	ENST00000234160	ENST00000422447		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-5UTR	ENST00000234160	ENST00000430553		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-5UTR	ENST00000234160	ENST00000396222		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000234160	ENST00000227157		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000234160	ENST00000540430		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000234160	ENST00000379412		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000234160	ENST00000542179		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-5UTR	ENST00000493692	ENST00000422447		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-5UTR	ENST00000493692	ENST00000430553		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-5UTR	ENST00000493692	ENST00000396222		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-intron	ENST00000493692	ENST00000227157		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-intron	ENST00000493692	ENST00000540430		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-intron	ENST00000493692	ENST00000379412		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
3UTR-intron	ENST00000493692	ENST00000542179		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-5UTR	ENST00000452526	ENST00000422447		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-5UTR	ENST00000452526	ENST00000430553		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-5UTR	ENST00000452526	ENST00000396222		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000452526	ENST00000227157		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000452526	ENST00000540430		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000452526	ENST00000379412		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
5CDS-intron	ENST00000452526	ENST00000542179		ChiTaRS3.1			BF893167	GORASP2	chr2	171806733	-	LDHA	chr11	18416110	+
intron-intron	ENST00000400301	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000400301	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000400301	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000400301	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000400301	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000400301	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000308271	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000374732	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000529637	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000479177	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000400301		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000308271		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000374732		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000529637		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000479177		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-intron	ENST00000421625	ENST00000421625		ChiTaRS3.1			AA513047	USP48	chr1	22054394	-	USP48	chr1	22054347	+
intron-3CDS	ENST00000301488	ENST00000301488		ChiTaRS3.1			BF746757	CDK2AP2	chr11	67274970	+	CDK2AP2	chr11	67274428	-
intron-intron	ENST00000301488	ENST00000531506		ChiTaRS3.1			BF746757	CDK2AP2	chr11	67274970	+	CDK2AP2	chr11	67274428	-
intron-3CDS	ENST00000531506	ENST00000301488		ChiTaRS3.1			BF746757	CDK2AP2	chr11	67274970	+	CDK2AP2	chr11	67274428	-
intron-intron	ENST00000531506	ENST00000531506		ChiTaRS3.1			BF746757	CDK2AP2	chr11	67274970	+	CDK2AP2	chr11	67274428	-
intron-3CDS	ENST00000336787	ENST00000368440		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000336787	ENST00000487215		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-intron	ENST00000336787	ENST00000539041		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3CDS	ENST00000396307	ENST00000368440		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000396307	ENST00000487215		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-intron	ENST00000396307	ENST00000539041		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3CDS	ENST00000564609	ENST00000368440		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000564609	ENST00000487215		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-intron	ENST00000564609	ENST00000539041		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3CDS	ENST00000569493	ENST00000368440		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000569493	ENST00000487215		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-intron	ENST00000569493	ENST00000539041		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3CDS	ENST00000561545	ENST00000368440		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000561545	ENST00000487215		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-intron	ENST00000561545	ENST00000539041		ChiTaRS3.1			BE925967	RAB27A	chr15	55518133	+	SMPDL3A	chr6	123116959	-
intron-3UTR	ENST00000344442	ENST00000299084		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000344442	ENST00000561205		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000509061	ENST00000299084		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000509061	ENST00000561205		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000324052	ENST00000299084		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000324052	ENST00000561205		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000503898	ENST00000299084		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000503898	ENST00000561205		ChiTaRS3.1			BG283247	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
3UTR-3UTR	ENST00000562955	ENST00000300688		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-3UTR	ENST00000562955	ENST00000529770		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-intron	ENST00000562955	ENST00000524422		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-3UTR	ENST00000372442	ENST00000300688		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-3UTR	ENST00000372442	ENST00000529770		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-intron	ENST00000372442	ENST00000524422		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000310739	ENST00000300688		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000310739	ENST00000529770		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-intron	ENST00000310739	ENST00000524422		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000372450	ENST00000300688		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000372450	ENST00000529770		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-intron	ENST00000372450	ENST00000524422		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000471177	ENST00000300688		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-3UTR	ENST00000471177	ENST00000529770		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
intron-intron	ENST00000471177	ENST00000524422		ChiTaRS3.1			AV727827	SZT2	chr1	43917901	+	ATP5L	chr11	118279817	+
3UTR-3UTR	ENST00000354185	ENST00000409718		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-3UTR	ENST00000354185	ENST00000358677		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-3UTR	ENST00000354185	ENST00000409988		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-3UTR	ENST00000354185	ENST00000409385		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-intron	ENST00000354185	ENST00000451764		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-3UTR	ENST00000354185	ENST00000360760		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-3UTR	ENST00000354185	ENST00000409140		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-intron	ENST00000354185	ENST00000409755		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-intron	ENST00000354185	ENST00000409151		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
3UTR-intron	ENST00000354185	ENST00000460095		ChiTaRS3.1			BP429447	DDX21	chr10	70744401	+	SPATS2L	chr2	201342988	-
intron-intron	ENST00000262995	ENST00000374741		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000262995	ENST00000573786		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262995	ENST00000571503		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262994	ENST00000374741		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000262994	ENST00000573786		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262994	ENST00000571503		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000505913	ENST00000374741		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000505913	ENST00000573786		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000505913	ENST00000571503		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000515388	ENST00000374741		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000515388	ENST00000573786		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000515388	ENST00000571503		ChiTaRS3.1			AW794847	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AK058037	IGHG1	chr14	106208357	-	IGHG1	chr22	23063378	+
5CDS-intron	ENST00000393432	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000393432	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000393432	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000442819	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000442819	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000442819	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000356731	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000356731	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000356731	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000329433	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000329433	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000329433	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000510411	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000510411	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-intron	ENST00000510411	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
intron-intron	ENST00000511300	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
intron-intron	ENST00000511300	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
intron-intron	ENST00000511300	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5UTR-intron	ENST00000524180	ENST00000357702		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5UTR-intron	ENST00000524180	ENST00000259235		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5UTR-intron	ENST00000524180	ENST00000259234		ChiTaRS3.1			DA533817	HNRNPH1	chr5	179050038	-	SAP130	chr2	128767985	-
5CDS-3UTR	ENST00000209728	ENST00000392993		ChiTaRS3.1			BE073887	CDC6	chr17	38447361	-	GK5	chr3	141883363	+
5CDS-intron	ENST00000209728	ENST00000544571		ChiTaRS3.1			BE073887	CDC6	chr17	38447361	-	GK5	chr3	141883363	+
5CDS-intron	ENST00000209728	ENST00000466685		ChiTaRS3.1			BE073887	CDC6	chr17	38447361	-	GK5	chr3	141883363	+
intron-intron	ENST00000524115	ENST00000524115		ChiTaRS3.1			BX107897	NKX6-3	chr8	41514199	-	NKX6-3	chr8	41519133	-
Frame-shit	ENST00000344771	ENST00000344771		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000344771	ENST00000395059		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000344771	ENST00000262518		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000395059	ENST00000344771		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000395059	ENST00000395059		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000395059	ENST00000262518		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000262518	ENST00000344771		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000262518	ENST00000395059		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
Frame-shit	ENST00000262518	ENST00000262518		ChiTaRS3.1			BP270137	SRCAP	chr16	30736053	+	SRCAP	chr16	30735462	+
intron-3CDS	ENST00000347401	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000347401	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000353578	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000295550	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000472056	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000409809	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000346358	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392004	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392003	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541179		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379749		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379747		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379743		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379742		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541481		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000473258	ENST00000497145		ChiTaRS3.1			BE160877	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000219837	ENST00000438132		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000542263		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000417362		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000251143		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000543152		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000448695		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000544275		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000538853		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000438132		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000542263		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000417362		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000251143		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000543152		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000448695		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000544275		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000538853		ChiTaRS3.1			AW593547	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-3UTR	ENST00000408388	ENST00000361866		ChiTaRS3.1			AK128687	PVT1	chr8	128943398	+	COL6A1	chr21	47424394	+
intron-3UTR	ENST00000408388	ENST00000498614		ChiTaRS3.1			AK128687	PVT1	chr8	128943398	+	COL6A1	chr21	47424394	+
intron-intron	ENST00000324262	ENST00000348715		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000397647		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000263335		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000429538		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000263334		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000348715		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000397647		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000263335		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000429538		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000263334		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000348715		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000397647		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000263335		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000429538		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000263334		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000348715		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000397647		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000263335		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000429538		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000263334		ChiTaRS3.1			BQ329957	CNDP2	chr18	72176450	+	PAX8	chr2	114001208	+
intron-intron	ENST00000321867	ENST00000575301		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
intron-intron	ENST00000321867	ENST00000572893		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
intron-intron	ENST00000321867	ENST00000302926		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
intron-intron	ENST00000540647	ENST00000575301		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
intron-intron	ENST00000540647	ENST00000572893		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
intron-intron	ENST00000540647	ENST00000302926		ChiTaRS3.1			BF741187	ULK1	chr12	132395219	+	NLGN2	chr17	7313034	-
5CDS-intron	ENST00000262519	ENST00000541428		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000379454		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000523897		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522919		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000356457		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000518068		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517903		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000445642		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517847		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522835		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517856		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000389204		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522603		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000379449		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517661		ChiTaRS3.1			BU158317	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
intron-5UTR	ENST00000485752	ENST00000485752		ChiTaRS3.1			R08617	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-intron	ENST00000485752	ENST00000295317		ChiTaRS3.1			R08617	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-5UTR	ENST00000295317	ENST00000485752		ChiTaRS3.1			R08617	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-intron	ENST00000295317	ENST00000295317		ChiTaRS3.1			R08617	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-3UTR	ENST00000380050	ENST00000534336		ChiTaRS3.1			BQ694317	CDK14	chr7	90736206	+	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000265741	ENST00000534336		ChiTaRS3.1			BQ694317	CDK14	chr7	90736206	+	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000406263	ENST00000534336		ChiTaRS3.1			BQ694317	CDK14	chr7	90736206	+	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000436577	ENST00000534336		ChiTaRS3.1			BQ694317	CDK14	chr7	90736206	+	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000496279	ENST00000534336		ChiTaRS3.1			BQ694317	CDK14	chr7	90736206	+	MALAT1	chr11	65266554	+
intron-intron	ENST00000283943	ENST00000283943		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000389045		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000389044		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000543084		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000283943	ENST00000409677		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000283943		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000389045		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000389044		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000543084		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389045	ENST00000409677		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000283943		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000389045		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000389044		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000543084		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000389044	ENST00000409677		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000283943		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000389045		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000389044		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000543084		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000543084	ENST00000409677		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000283943		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000389045		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000389044		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000543084		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
intron-intron	ENST00000409677	ENST00000409677		ChiTaRS3.1			CR741687	TRIP12	chr2	230638327	-	TRIP12	chr2	230659095	-
In-frame	ENST00000534358	ENST00000252674		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
5CDS-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
In-frame	ENST00000389506	ENST00000252674		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
5CDS-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
intron-3CDS	ENST00000354520	ENST00000252674		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
intron-3CDS	ENST00000420751	ENST00000252674		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			DQ224342	KMT2A	chr11	118355691	+	MLLT1	chr19	6222697	-
intron-3CDS	ENST00000468521	ENST00000367249		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-5UTR	ENST00000468521	ENST00000497655		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-3CDS	ENST00000403528	ENST00000367249		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-5UTR	ENST00000403528	ENST00000497655		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-3CDS	ENST00000373706	ENST00000367249		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-5UTR	ENST00000373706	ENST00000497655		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-3CDS	ENST00000373705	ENST00000367249		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-5UTR	ENST00000373705	ENST00000497655		ChiTaRS3.1			AA368017	HCRTR1	chr1	32096404	+	CYB5R1	chr1	202932220	-
intron-intron	ENST00000368491	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368491	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000368488	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000360290	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000392500	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000419517	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000259371		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000408936		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000309989		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
intron-intron	ENST00000472713	ENST00000487716		ChiTaRS3.1			AA330167	CEP85L	chr6	118953431	-	DAB2IP	chr9	124509859	+
5UTR-3CDS	ENST00000296271	ENST00000296271		ChiTaRS3.1			W28977	RHO	chr3	129247495	-	RHO	chr3	129251506	+
In-frame	ENST00000248553	ENST00000248553		ChiTaRS3.1			AI609727	HSPB1	chr7	75932066	-	HSPB1	chr7	75933375	-
5CDS-5UTR	ENST00000248553	ENST00000429938		ChiTaRS3.1			AI609727	HSPB1	chr7	75932066	-	HSPB1	chr7	75933375	-
intron-3CDS	ENST00000429938	ENST00000248553		ChiTaRS3.1			AI609727	HSPB1	chr7	75932066	-	HSPB1	chr7	75933375	-
intron-5UTR	ENST00000429938	ENST00000429938		ChiTaRS3.1			AI609727	HSPB1	chr7	75932066	-	HSPB1	chr7	75933375	-
intron-intron	ENST00000379562	ENST00000379562		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000535925		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000463666		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000543003		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000379562		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000535925		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000463666		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000543003		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000379562		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000535925		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000463666		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000543003		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000379562		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000535925		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000463666		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000543003		ChiTaRS3.1			BE011287	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-3CDS	ENST00000401466	ENST00000584601		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000401466	ENST00000406381		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000401466	ENST00000541774		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000445658		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000540147		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000584450		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000269571		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000578199		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000540042		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000401466	ENST00000584888		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000424086	ENST00000584601		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000424086	ENST00000406381		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000424086	ENST00000541774		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000445658		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000540147		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000584450		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000269571		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000578199		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000540042		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000424086	ENST00000584888		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000272521	ENST00000584601		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000272521	ENST00000406381		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000272521	ENST00000541774		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000445658		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000540147		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000584450		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000269571		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000578199		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000540042		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000272521	ENST00000584888		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000496203	ENST00000584601		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000496203	ENST00000406381		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000496203	ENST00000541774		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000445658		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000540147		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000584450		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000269571		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000578199		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000540042		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000496203	ENST00000584888		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000409951	ENST00000584601		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000409951	ENST00000406381		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000409951	ENST00000541774		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000445658		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000540147		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000584450		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000269571		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000578199		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000540042		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-intron	ENST00000409951	ENST00000584888		ChiTaRS3.1			BF229957	TMEM177	chr2	120473042	+	ERBB2	chr17	37866403	-
intron-3CDS	ENST00000341460	ENST00000341460		ChiTaRS3.1			AK023877	SYDE2	chr1	85648270	-	SYDE2	chr1	85666456	-
intron-3UTR	ENST00000205636	ENST00000205636		ChiTaRS3.1			BM979367	CMTM6	chr3	32524755	+	CMTM6	chr3	32524786	-
intron-3CDS	ENST00000366603	ENST00000366603		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000366603	ENST00000264183		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000366603	ENST00000349213		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-intron	ENST00000366603	ENST00000494543		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000264183	ENST00000366603		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000264183	ENST00000264183		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000264183	ENST00000349213		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-intron	ENST00000264183	ENST00000494543		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000349213	ENST00000366603		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000349213	ENST00000264183		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000349213	ENST00000349213		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-intron	ENST00000349213	ENST00000494543		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000494543	ENST00000366603		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000494543	ENST00000264183		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3CDS	ENST00000494543	ENST00000349213		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-intron	ENST00000494543	ENST00000494543		ChiTaRS3.1			AA112197	ARID4B	chr1	235345788	-	ARID4B	chr1	235345879	+
intron-3UTR	ENST00000371269	ENST00000371711		ChiTaRS3.1			AI207637	DHCR24	chr1	55317035	+	B4GALT5	chr20	48252296	-
intron-3UTR	ENST00000537443	ENST00000371711		ChiTaRS3.1			AI207637	DHCR24	chr1	55317035	+	B4GALT5	chr20	48252296	-
intron-3UTR	ENST00000535035	ENST00000371711		ChiTaRS3.1			AI207637	DHCR24	chr1	55317035	+	B4GALT5	chr20	48252296	-
intron-3CDS	ENST00000410080	ENST00000410080		ChiTaRS3.1			BQ318887	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-intron	ENST00000410080	ENST00000486100		ChiTaRS3.1			BQ318887	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-3CDS	ENST00000486100	ENST00000410080		ChiTaRS3.1			BQ318887	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
intron-intron	ENST00000486100	ENST00000486100		ChiTaRS3.1			BQ318887	PRPF40A	chr2	153515676	-	PRPF40A	chr2	153519669	-
Frame-shit	ENST00000328908	ENST00000328908		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000328908	ENST00000397588		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000449732		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000343762		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000328908		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000397588		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000449732		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000343762		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000328908		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000397588		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000449732		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000343762		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000328908		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000397588		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000449732		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000343762		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000328908		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000397588		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000449732		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000343762		ChiTaRS3.1			BF907097	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-3UTR	ENST00000389698	ENST00000405995		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000389698	ENST00000357304		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000389698	ENST00000458550		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000389698	ENST00000372249		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000389698	ENST00000465931		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000307138	ENST00000405995		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000307138	ENST00000357304		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000307138	ENST00000458550		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000307138	ENST00000372249		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000307138	ENST00000465931		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000258840	ENST00000405995		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000258840	ENST00000357304		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000258840	ENST00000458550		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-intron	ENST00000258840	ENST00000372249		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
5CDS-3UTR	ENST00000258840	ENST00000465931		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000382366	ENST00000405995		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000382366	ENST00000357304		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-intron	ENST00000382366	ENST00000458550		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-intron	ENST00000382366	ENST00000372249		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000382366	ENST00000465931		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000554704	ENST00000405995		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000554704	ENST00000357304		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-intron	ENST00000554704	ENST00000458550		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-intron	ENST00000554704	ENST00000372249		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000554704	ENST00000465931		ChiTaRS3.1			DQ786317	RALGAPA1	chr14	36007562	-	PRRC2B	chr9	134371910	+
intron-3UTR	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA650437	IGKC	chr2	89156994	-	IGKC	chr2	89156871	+
intron-3UTR	ENST00000327987	ENST00000375712		ChiTaRS3.1			R23707	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000327987	ENST00000418717		ChiTaRS3.1			R23707	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000559231	ENST00000375712		ChiTaRS3.1			R23707	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000559231	ENST00000418717		ChiTaRS3.1			R23707	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3CDS	ENST00000409359	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000409359	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000409359	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000326016	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000326016	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000326016	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000392953	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000392953	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000392953	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000428230	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000428230	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000428230	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000525839	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000525839	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000525839	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000409303	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000409303	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000409303	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000355771	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000355771	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000355771	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000439368	ENST00000393386		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-3CDS	ENST00000439368	ENST00000449182		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000439368	ENST00000483028		ChiTaRS3.1			DA440577	ARHGEF4	chr2	131669952	+	PTPRZ1	chr7	121659177	+
intron-intron	ENST00000470422	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000470422	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000470422	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000470422	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000470422	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000470422	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000246043	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377813	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000377807	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000360807	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000470422		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000246043		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000377813		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000377807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000360807		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000455029	ENST00000455029		ChiTaRS3.1			CB048557	RRBP1	chr20	17596132	-	RRBP1	chr20	17641036	-
intron-intron	ENST00000381844	ENST00000414305		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000543135		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000427148		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000357639		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000358229		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000470930		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000414305		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000543135		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000427148		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000357639		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000358229		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000470930		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000414305		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000543135		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000427148		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000357639		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000358229		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000470930		ChiTaRS3.1			BF361277	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000380393	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000380393	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000380393	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000380393	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000216877	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000216877	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000216877	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000216877	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000358719	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000358719	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000358719	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000358719	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000399903	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000399903	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000399903	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000399903	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000425918	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000425918	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000425918	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000425918	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000318266	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000318266	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000318266	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000318266	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000356147	ENST00000547002		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000356147	ENST00000442892		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000356147	ENST00000442218		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000356147	ENST00000476104		ChiTaRS3.1			AK024387	PTPRA	chr20	2962677	+	SLC48A1	chr12	48180484	-
intron-intron	ENST00000384756	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384756	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384756	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384756	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000364799	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000364799	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000364799	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000364799	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384693	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384693	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384693	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384693	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000383926	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000383926	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000383926	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000383926	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000516331	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000516331	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000516331	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000516331	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384706	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384706	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384706	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384706	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
5CDS-intron	ENST00000363981	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
5CDS-intron	ENST00000363981	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
5CDS-intron	ENST00000363981	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
5CDS-intron	ENST00000363981	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384147	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384147	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384147	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000384147	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000365607	ENST00000527350		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000365607	ENST00000278919		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000365607	ENST00000366139		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000365607	ENST00000524435		ChiTaRS3.1			DA789547	SNHG1	chr11	62622486	-	FEZ1	chr11	125366201	-
intron-intron	ENST00000335325	ENST00000335325		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000335325	ENST00000320619		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000335325	ENST00000566250		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000335325	ENST00000567962		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000335325	ENST00000564320		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000320619	ENST00000335325		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000320619	ENST00000320619		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000320619	ENST00000566250		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000320619	ENST00000567962		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000320619	ENST00000564320		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000566250	ENST00000335325		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000566250	ENST00000320619		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000566250	ENST00000566250		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000566250	ENST00000567962		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000566250	ENST00000564320		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000567962	ENST00000335325		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000567962	ENST00000320619		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000567962	ENST00000566250		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000567962	ENST00000567962		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000567962	ENST00000564320		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000564320	ENST00000335325		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000564320	ENST00000320619		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000564320	ENST00000566250		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000564320	ENST00000567962		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000564320	ENST00000564320		ChiTaRS3.1			BI022207	ZNRF1	chr16	75088317	-	ZNRF1	chr16	75090783	+
intron-intron	ENST00000373825	ENST00000453658		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000377259		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000377245		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000348208		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000265384		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000535702		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000539225		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373825	ENST00000498204		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000453658		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000377259		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000377245		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000348208		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000265384		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000535702		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000539225		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000423325	ENST00000498204		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000453658		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000377259		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000377245		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000348208		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000265384		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000535702		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000539225		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373822	ENST00000498204		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000453658		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000377259		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000377245		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000348208		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000265384		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000535702		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000539225		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-intron	ENST00000373821	ENST00000498204		ChiTaRS3.1			BF381297	SRPK1	chr6	35811521	-	TJP2	chr9	71865303	+
intron-3CDS	ENST00000405510	ENST00000321867		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000405510	ENST00000540647		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000216064	ENST00000321867		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000216064	ENST00000540647		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000405018	ENST00000321867		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000405018	ENST00000540647		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000406622	ENST00000321867		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000406622	ENST00000540647		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000411587	ENST00000321867		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000411587	ENST00000540647		ChiTaRS3.1			BM808097	SUN2	chr22	39135775	+	ULK1	chr12	132405706	+
intron-3CDS	ENST00000329517	ENST00000420329		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000329517	ENST00000560098		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000329517	ENST00000268184		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000329517	ENST00000558619		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-3CDS	ENST00000403325	ENST00000420329		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000403325	ENST00000560098		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000403325	ENST00000268184		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000403325	ENST00000558619		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-3CDS	ENST00000405009	ENST00000420329		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000405009	ENST00000560098		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000405009	ENST00000268184		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000405009	ENST00000558619		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-3CDS	ENST00000460402	ENST00000420329		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000460402	ENST00000560098		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000460402	ENST00000268184		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-intron	ENST00000460402	ENST00000558619		ChiTaRS3.1			BF512137	GNB1L	chr22	19780611	-	CRTC3	chr15	91172485	+
intron-3UTR	ENST00000337959	ENST00000337959		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000337959	ENST00000263246		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000337959	ENST00000407585		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000337959	ENST00000403744		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000337959	ENST00000402229		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000263246	ENST00000337959		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000263246	ENST00000263246		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000263246	ENST00000407585		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000263246	ENST00000403744		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000263246	ENST00000402229		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000407585	ENST00000337959		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000407585	ENST00000263246		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000407585	ENST00000407585		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000407585	ENST00000403744		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000407585	ENST00000402229		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000403744	ENST00000337959		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000403744	ENST00000263246		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000403744	ENST00000407585		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000403744	ENST00000403744		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000403744	ENST00000402229		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000402229	ENST00000337959		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000402229	ENST00000263246		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000402229	ENST00000407585		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000402229	ENST00000403744		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-3UTR	ENST00000402229	ENST00000402229		ChiTaRS3.1			BI011337	PACSIN2	chr22	43274894	+	PACSIN2	chr22	43267320	-
intron-intron	ENST00000358127	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000523241	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000520154	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000377852	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000377853	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000522003	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000520281	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000414447	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000523145	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000446742	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000377847	ENST00000390548		ChiTaRS3.1			BC013877	PAX5	chr9	37034482	+	IGHG1	chr14	106830036	-
intron-intron	ENST00000310298	ENST00000261574		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000310298	ENST00000490680		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000310298	ENST00000539640		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000310298	ENST00000493492		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557957	ENST00000261574		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557957	ENST00000490680		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557957	ENST00000539640		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557957	ENST00000493492		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000394553	ENST00000261574		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000394553	ENST00000490680		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000394553	ENST00000539640		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000394553	ENST00000493492		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000339708	ENST00000261574		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000339708	ENST00000490680		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000339708	ENST00000539640		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000339708	ENST00000493492		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557819	ENST00000261574		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557819	ENST00000490680		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557819	ENST00000539640		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000557819	ENST00000493492		ChiTaRS3.1			BF770537	PDE8A	chr15	85645170	-	IPO5	chr13	98662516	-
intron-intron	ENST00000377602	ENST00000377602		ChiTaRS3.1			AI954707	ST8SIA6	chr10	17390449	+	ST8SIA6	chr10	17383988	+
intron-3CDS	ENST00000458501	ENST00000458501		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000458501	ENST00000379644		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000297798		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000521576		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000458501		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000379644		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000297798		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000521576		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000458501		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000379644		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000297798		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000521576		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000458501		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000379644		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000297798		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000521576		ChiTaRS3.1			CN256927	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
3UTR-3CDS	ENST00000558401	ENST00000558401		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000558401	ENST00000559916		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000558401	ENST00000544417		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-intron	ENST00000558401	ENST00000559220		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000558401		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000559916		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000544417		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-intron	ENST00000559916	ENST00000559220		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000558401		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000559916		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000544417		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-intron	ENST00000544417	ENST00000559220		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000558401		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000559916		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000544417		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-intron	ENST00000559220	ENST00000559220		ChiTaRS3.1			AW371027	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000538442	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000538442	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000538442	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000538442	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000538442	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000538442	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000538442	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000538442	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000399150	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000399150	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000399150	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000399150	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000399150	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000399150	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000399150	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000399150	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000252229	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000252229	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000252229	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000252229	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000252229	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000252229	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000252229	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000252229	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000427115	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000427115	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000427115	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000427115	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000427115	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000427115	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000427115	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000427115	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000442104	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000442104	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000442104	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000442104	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000442104	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000442104	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000442104	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000442104	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451603	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451603	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451603	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451603	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451603	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451603	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451603	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451603	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000546706	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000546706	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000546706	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000546706	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000546706	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000546706	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000546706	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000546706	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000438954	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000438954	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000438954	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000438954	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000438954	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000438954	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000438954	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000438954	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000458032	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000458032	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000458032	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000458032	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000458032	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000458032	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000458032	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000458032	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551950	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551950	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551950	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551950	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551950	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551950	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551950	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551950	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000437651	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000437651	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000437651	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000437651	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000437651	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000437651	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000437651	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000437651	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000383514	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000383514	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000383514	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000383514	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000383514	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000383514	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000383514	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000383514	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551608	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551608	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551608	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551608	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551608	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551608	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551608	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551608	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436531	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436531	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436531	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436531	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436531	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436531	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436531	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436531	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436655	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436655	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436655	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000436655	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436655	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436655	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436655	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000436655	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000547574	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000547574	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000547574	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000547574	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000547574	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000547574	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000547574	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000547574	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000400313	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000400313	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000400313	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000400313	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000400313	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000400313	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000400313	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000400313	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428416	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428416	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428416	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428416	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428416	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428416	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428416	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428416	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000549014	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000549014	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000549014	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000549014	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000549014	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000549014	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000549014	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000549014	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428059	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428059	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428059	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000428059	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428059	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428059	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428059	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000428059	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451789	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451789	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451789	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000451789	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451789	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451789	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451789	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000451789	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000443156	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000443156	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000443156	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000443156	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000443156	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000443156	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000443156	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000443156	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551960	ENST00000362042		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551960	ENST00000585291		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551960	ENST00000357480		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000551960	ENST00000361665		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551960	ENST00000579481		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551960	ENST00000582155		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551960	ENST00000583378		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-intron	ENST00000551960	ENST00000536222		ChiTaRS3.1			BF762977	MICB	chr6	2667875	+	NFE2L1	chr17	46136073	+
intron-3CDS	ENST00000225792	ENST00000370918		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000225792	ENST00000304434		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000225792	ENST00000542638		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000225792	ENST00000541407		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000225792	ENST00000486973		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000225792	ENST00000370913		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000450599	ENST00000370918		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000450599	ENST00000304434		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000450599	ENST00000542638		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000450599	ENST00000541407		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000450599	ENST00000486973		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000450599	ENST00000370913		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000578804	ENST00000370918		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000578804	ENST00000304434		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000578804	ENST00000542638		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000578804	ENST00000541407		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000578804	ENST00000486973		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000578804	ENST00000370913		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000580026	ENST00000370918		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000580026	ENST00000304434		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000580026	ENST00000542638		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000580026	ENST00000541407		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000580026	ENST00000486973		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-intron	ENST00000580026	ENST00000370913		ChiTaRS3.1			BF096087	DDX5	chr17	62499050	-	ELOVL5	chr6	53138076	+
intron-3CDS	ENST00000204726	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000204726	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000204726	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000204726	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000450791	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000450791	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000450791	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000450791	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000456883	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000456883	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000456883	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000456883	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000537452	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000537452	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000537452	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000537452	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000545875	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000545875	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000545875	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000545875	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000534967	ENST00000342160		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000534967	ENST00000262854		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000534967	ENST00000474288		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-intron	ENST00000534967	ENST00000218328		ChiTaRS3.1			AI268307	GOLGA3	chr12	133402780	-	HUWE1	chrX	53564547	+
intron-3CDS	ENST00000372921	ENST00000372921		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000372921	ENST00000535178		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-5UTR	ENST00000372921	ENST00000492380		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000535178	ENST00000372921		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000535178	ENST00000535178		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-5UTR	ENST00000535178	ENST00000492380		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000492380	ENST00000372921		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000492380	ENST00000535178		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-5UTR	ENST00000492380	ENST00000492380		ChiTaRS3.1			AW363257	ANXA7	chr10	75135877	-	ANXA7	chr10	75148090	+
intron-3CDS	ENST00000357922	ENST00000357922		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000357922	ENST00000349064		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000357922	ENST00000297512		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000349064	ENST00000357922		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000349064	ENST00000349064		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000349064	ENST00000297512		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000297512	ENST00000357922		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000297512	ENST00000349064		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000297512	ENST00000297512		ChiTaRS3.1			AA429417	ASIC3	chr7	150747842	+	ASIC3	chr7	150745979	+
intron-3CDS	ENST00000155840	ENST00000310473		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-3CDS	ENST00000155840	ENST00000536983		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-intron	ENST00000155840	ENST00000542615		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-3CDS	ENST00000335475	ENST00000310473		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-3CDS	ENST00000335475	ENST00000536983		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-intron	ENST00000335475	ENST00000542615		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-3CDS	ENST00000526095	ENST00000310473		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-3CDS	ENST00000526095	ENST00000536983		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-intron	ENST00000526095	ENST00000542615		ChiTaRS3.1			AK226077	KCNQ1	chr11	2488318	+	UCP2	chr11	73686137	-
intron-intron	ENST00000536668	ENST00000295640		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000536668	ENST00000367286		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000536668	ENST00000471105		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000544994	ENST00000295640		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000544994	ENST00000367286		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000544994	ENST00000471105		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000228811	ENST00000295640		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000228811	ENST00000367286		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000228811	ENST00000471105		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000540107	ENST00000295640		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000540107	ENST00000367286		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-intron	ENST00000540107	ENST00000471105		ChiTaRS3.1			BF355937	PRR4	chr12	10999802	+	RNPEP	chr1	201965139	+
intron-5UTR	ENST00000390394	ENST00000542575		ChiTaRS3.1			CN354917	TRBV20-1	chr16	2025249	-	SLC1A5	chr19	47291804	-
intron-intron	ENST00000390394	ENST00000434726		ChiTaRS3.1			CN354917	TRBV20-1	chr16	2025249	-	SLC1A5	chr19	47291804	-
intron-intron	ENST00000390394	ENST00000594991		ChiTaRS3.1			CN354917	TRBV20-1	chr16	2025249	-	SLC1A5	chr19	47291804	-
intron-intron	ENST00000390394	ENST00000412532		ChiTaRS3.1			CN354917	TRBV20-1	chr16	2025249	-	SLC1A5	chr19	47291804	-
3UTR-3UTR	ENST00000369799	ENST00000369799		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
3UTR-intron	ENST00000369799	ENST00000475081		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
3UTR-3UTR	ENST00000369799	ENST00000359172		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
3UTR-intron	ENST00000369799	ENST00000393614		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000475081	ENST00000369799		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000475081	ENST00000475081		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000475081	ENST00000359172		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000475081	ENST00000393614		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000359172	ENST00000369799		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000359172	ENST00000475081		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000359172	ENST00000359172		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000359172	ENST00000393614		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000393614	ENST00000369799		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000393614	ENST00000475081		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-3UTR	ENST00000393614	ENST00000359172		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000393614	ENST00000393614		ChiTaRS3.1			BQ774807	AHCYL1	chr1	110566259	-	AHCYL1	chr1	110564873	+
intron-intron	ENST00000508821	ENST00000540275		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000508821	ENST00000452085		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000508821	ENST00000537543		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000508821	ENST00000331677		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000508821	ENST00000359564		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000508821	ENST00000606265		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000540275		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000452085		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000537543		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000331677		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000359564		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000425382	ENST00000606265		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000540275		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000452085		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000537543		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000331677		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000359564		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000438340	ENST00000606265		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000540275		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000452085		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000537543		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000331677		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000359564		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000505959	ENST00000606265		ChiTaRS3.1			BQ340167	ELOVL7	chr5	60128856	+	DSE	chr6	116599354	-
intron-intron	ENST00000392825	ENST00000398571		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
intron-intron	ENST00000392825	ENST00000472689		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
intron-intron	ENST00000409237	ENST00000398571		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
intron-intron	ENST00000409237	ENST00000472689		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
intron-intron	ENST00000487047	ENST00000398571		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
intron-intron	ENST00000487047	ENST00000472689		ChiTaRS3.1			Z97017	GALNT13	chr2	155153258	-	USP34	chr2	61479516	+
5CDS-intron	ENST00000490882	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000490882	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000490882	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000490882	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000429972	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000429972	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000429972	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000429972	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000295956	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000295956	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000295956	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000295956	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000358537	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000358537	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000358537	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000358537	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000357272	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000357272	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000357272	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000357272	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000348383	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000348383	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000348383	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000348383	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000493452	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000493452	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000493452	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000493452	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000419752	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000419752	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000419752	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
5CDS-intron	ENST00000419752	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
intron-intron	ENST00000484981	ENST00000303391		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
intron-intron	ENST00000484981	ENST00000453960		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
intron-intron	ENST00000484981	ENST00000407218		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
intron-intron	ENST00000484981	ENST00000460227		ChiTaRS3.1			BF089107	FLNB	chr3	58095006	-	MECP2	chrX	153348636	+
intron-3UTR	ENST00000308664	ENST00000393461		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-intron	ENST00000308664	ENST00000290015		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
3UTR-3UTR	ENST00000395494	ENST00000393461		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
3UTR-intron	ENST00000395494	ENST00000290015		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-3UTR	ENST00000539276	ENST00000393461		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-intron	ENST00000539276	ENST00000290015		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-3UTR	ENST00000550248	ENST00000393461		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-intron	ENST00000550248	ENST00000290015		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-3UTR	ENST00000552636	ENST00000393461		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
intron-intron	ENST00000552636	ENST00000290015		ChiTaRS3.1			BF921697	ATP2A2	chr12	110785678	-	WNT9B	chr17	44963656	-
3UTR-3UTR	ENST00000339241	ENST00000339241		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
3UTR-intron	ENST00000339241	ENST00000515726		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
3UTR-3UTR	ENST00000339241	ENST00000394339		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
intron-3UTR	ENST00000515726	ENST00000339241		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
intron-intron	ENST00000515726	ENST00000515726		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
intron-3UTR	ENST00000515726	ENST00000394339		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
3UTR-3UTR	ENST00000394339	ENST00000339241		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
3UTR-intron	ENST00000394339	ENST00000515726		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
3UTR-3UTR	ENST00000394339	ENST00000394339		ChiTaRS3.1			AA747227	SPRY1	chr4	124324749	+	SPRY1	chr4	124324830	-
intron-intron	ENST00000307142	ENST00000307142		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000307142	ENST00000448416		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000307142	ENST00000429713		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000307142	ENST00000434046		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000307142		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000448416		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000448416	ENST00000429713		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000434046		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000307142		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000448416		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000429713	ENST00000429713		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000434046		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000307142		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000448416		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000434046	ENST00000429713		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000434046		ChiTaRS3.1			AU117257	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
Frame-shit	ENST00000341861	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000341861	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
5CDS-5UTR	ENST00000341861	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000358939	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-5UTR	ENST00000358939	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000300141	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-5UTR	ENST00000300141	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321147	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
5CDS-5UTR	ENST00000321147	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000321118	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
5CDS-5UTR	ENST00000321118	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000339244	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
5CDS-5UTR	ENST00000339244	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
Frame-shit	ENST00000559233	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
5CDS-5UTR	ENST00000559233	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000313182		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000395644		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000567744		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000431261		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000569491		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000420799		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-3CDS	ENST00000560048	ENST00000442903		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
intron-5UTR	ENST00000560048	ENST00000569180		ChiTaRS3.1			BF038267	DPP8	chr15	65807994	-	VWA9	chr15	65877228	-
In-frame	ENST00000304858	ENST00000304858		ChiTaRS3.1			AW819997	HSPA4	chr5	132431801	-	HSPA4	chr5	132439633	-
5CDS-intron	ENST00000304858	ENST00000504328		ChiTaRS3.1			AW819997	HSPA4	chr5	132431801	-	HSPA4	chr5	132439633	-
intron-3CDS	ENST00000504328	ENST00000304858		ChiTaRS3.1			AW819997	HSPA4	chr5	132431801	-	HSPA4	chr5	132439633	-
intron-intron	ENST00000504328	ENST00000504328		ChiTaRS3.1			AW819997	HSPA4	chr5	132431801	-	HSPA4	chr5	132439633	-
intron-intron	ENST00000430275	ENST00000368679		ChiTaRS3.1			BF993607	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000368676		ChiTaRS3.1			BF993607	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000467145		ChiTaRS3.1			BF993607	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000373913	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000373913		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000401952		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000339266		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000475894		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			BM929277	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-3CDS	ENST00000318789	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318789	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000318789	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000475937	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000475937	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000493089	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000493089	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000484350	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000484350	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000318779	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000318779	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000491238	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000491238	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000498215	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000498215	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000468577	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000468577	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000317133		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375741		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375739		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000370623		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000544132		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000218789		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375736		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000426073		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375737		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000375723		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3CDS	ENST00000472382	ENST00000478679		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-3UTR	ENST00000472382	ENST00000483189		ChiTaRS3.1			T70737	FOXP1	chr3	71593756	+	ARHGEF7	chr13	111927879	+
intron-intron	ENST00000253363	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000253363		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000361162		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000528062		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000407261		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000397370		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000463098		ChiTaRS3.1			DW409707	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF487904	AFF1	chr4	87975860	+	KMT2A	chr11	118359135	+
intron-3CDS	ENST00000521264	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000521264	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000521264	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000521264	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000522314	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000520382	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000524142	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000313115	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000370661		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000316077		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000370663		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000522710	ENST00000495432		ChiTaRS3.1			BC028177	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-intron	ENST00000448838	ENST00000354618		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000448838	ENST00000469141		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000448838	ENST00000466743		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000354618		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000469141		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000227868	ENST00000466743		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000354618		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000469141		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000430469	ENST00000466743		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000354618		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000469141		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000477173	ENST00000466743		ChiTaRS3.1			AU122517	PDHX	chr11	34988086	+	THRAP3	chr1	36725472	+
intron-intron	ENST00000381269	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000441740		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000331559		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000561096		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000561293		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000560253		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000558555		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000559524		ChiTaRS3.1			CR749687	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
3UTR-intron	ENST00000534336	ENST00000434600		ChiTaRS3.1			AW995767	MALAT1	chr11	65271126	-	LAMP2	chrX	119570813	-
3UTR-intron	ENST00000534336	ENST00000538785		ChiTaRS3.1			AW995767	MALAT1	chr11	65271126	-	LAMP2	chrX	119570813	-
3UTR-intron	ENST00000534336	ENST00000200639		ChiTaRS3.1			AW995767	MALAT1	chr11	65271126	-	LAMP2	chrX	119570813	-
3UTR-3UTR	ENST00000534336	ENST00000371335		ChiTaRS3.1			AW995767	MALAT1	chr11	65271126	-	LAMP2	chrX	119570813	-
3UTR-intron	ENST00000534336	ENST00000540603		ChiTaRS3.1			AW995767	MALAT1	chr11	65271126	-	LAMP2	chrX	119570813	-
Frame-shit	ENST00000310298	ENST00000310298		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000310298	ENST00000557957		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000310298	ENST00000394553		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000310298	ENST00000339708		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
5CDS-intron	ENST00000310298	ENST00000557819		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000557957	ENST00000310298		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000557957	ENST00000557957		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000557957	ENST00000394553		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000557957	ENST00000339708		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
5CDS-intron	ENST00000557957	ENST00000557819		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000394553	ENST00000310298		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000394553	ENST00000557957		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000394553	ENST00000394553		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000394553	ENST00000339708		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
5CDS-intron	ENST00000394553	ENST00000557819		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000339708	ENST00000310298		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000339708	ENST00000557957		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000339708	ENST00000394553		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
Frame-shit	ENST00000339708	ENST00000339708		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
5CDS-intron	ENST00000339708	ENST00000557819		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-3CDS	ENST00000557819	ENST00000310298		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-3CDS	ENST00000557819	ENST00000557957		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-3CDS	ENST00000557819	ENST00000394553		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-3CDS	ENST00000557819	ENST00000339708		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-intron	ENST00000557819	ENST00000557819		ChiTaRS3.1			BF951597	PDE8A	chr15	85666328	-	PDE8A	chr15	85660947	+
intron-intron	ENST00000298310	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000298310	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000298310	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000298310	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000298310	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000298310	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000382135	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000545773	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556925	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000546046	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000298310		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000382135		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000545773		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000556925		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000546046		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000556672	ENST00000556672		ChiTaRS3.1			BU685747	NEMF	chr14	50267197	+	NEMF	chr14	50255863	+
intron-intron	ENST00000300134	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000300134	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000300134	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000538913	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000538913	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000538913	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000543873	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000543873	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000543873	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000556155	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000556155	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000556155	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000537215	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000537215	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000537215	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000454075	ENST00000533141		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000454075	ENST00000399817		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-intron	ENST00000454075	ENST00000602569		ChiTaRS3.1			BF848797	STAT6	chr12	57501033	-	IFITM2	chr11	308222	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000394464	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000343796	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000415690	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000424646	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504572	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000394466	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000231509	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000416954	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000503201	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-3UTR	ENST00000504336	ENST00000415690		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000424646		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			BQ433097	NR3C1	chr5	142657974	+	NR3C1	chr5	142657935	-
intron-intron	ENST00000353891	ENST00000332509		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000335539		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000402064		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000490473		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000436218		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000447598		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000435484		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000353891	ENST00000417303		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000332509		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000335539		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000402064		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000490473		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000436218		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000447598		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000435484		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000263200	ENST00000417303		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000332509		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000335539		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000402064		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000490473		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000436218		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000447598		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000435484		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000427926	ENST00000417303		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000332509		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000335539		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000402064		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000490473		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000436218		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000447598		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000435484		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-intron	ENST00000442042	ENST00000417303		ChiTaRS3.1			CV375347	CLTCL1	chr22	19228511	+	PLA2G6	chr22	38560516	+
intron-3UTR	ENST00000395305	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000395305	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000395303	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000395303	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000374843	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000374843	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000464392	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000464392	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000451753	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000451753	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000452330	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000452330	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000434337	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000434337	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000490859	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000490859	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000452703	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000452703	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000451148	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000451148	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000453490	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000453490	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000466446	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000466446	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000443447	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000443447	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000420931	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000420931	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000439054	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000439054	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000467732	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000467732	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000457285	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000457285	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000419041	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000419041	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000441375	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000441375	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000462225	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000462225	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000435503	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000435503	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000452434	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000452434	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000450601	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000450601	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000479292	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000479292	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000420299	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000420299	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000432991	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000432991	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000452615	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000452615	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000494230	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000494230	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000383228	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000383228	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000383227	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000383227	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000383230	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000383230	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-3UTR	ENST00000486785	ENST00000370132		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
intron-intron	ENST00000486785	ENST00000370131		ChiTaRS3.1			BE832547	HLA-DMA	chr6	32918685	+	DBT	chr1	100661530	+
5UTR-3CDS	ENST00000270792	ENST00000510123		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
5UTR-3CDS	ENST00000270792	ENST00000389158		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
5UTR-3CDS	ENST00000270792	ENST00000507413		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
5UTR-3CDS	ENST00000270792	ENST00000509257		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
intron-3CDS	ENST00000319041	ENST00000510123		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
intron-3CDS	ENST00000319041	ENST00000389158		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
intron-3CDS	ENST00000319041	ENST00000507413		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
intron-3CDS	ENST00000319041	ENST00000509257		ChiTaRS3.1			BG744907	SH3BGRL3	chr1	26606607	-	NOP16	chr5	175815444	+
intron-intron	ENST00000437232	ENST00000255175		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
intron-3UTR	ENST00000437232	ENST00000342374		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
intron-intron	ENST00000437232	ENST00000541235		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
intron-intron	ENST00000437232	ENST00000468234		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
5UTR-intron	ENST00000605833	ENST00000255175		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
5UTR-3UTR	ENST00000605833	ENST00000342374		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
5UTR-intron	ENST00000605833	ENST00000541235		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
5UTR-intron	ENST00000605833	ENST00000468234		ChiTaRS3.1			BF569677	VIM-AS1	chr10	17271344	+	SERINC3	chr20	43127088	-
intron-3CDS	ENST00000441250	ENST00000441250		ChiTaRS3.1			BF954607	NUDT22	chr11	63994106	-	NUDT22	chr11	63994172	+
intron-3CDS	ENST00000441250	ENST00000279206		ChiTaRS3.1			BF954607	NUDT22	chr11	63994106	-	NUDT22	chr11	63994172	+
intron-3CDS	ENST00000279206	ENST00000441250		ChiTaRS3.1			BF954607	NUDT22	chr11	63994106	-	NUDT22	chr11	63994172	+
intron-3CDS	ENST00000279206	ENST00000279206		ChiTaRS3.1			BF954607	NUDT22	chr11	63994106	-	NUDT22	chr11	63994172	+
intron-intron	ENST00000543273	ENST00000350427		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000543273	ENST00000447342		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000543273	ENST00000431882		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000543273	ENST00000438029		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000436886	ENST00000350427		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000436886	ENST00000447342		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000436886	ENST00000431882		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-intron	ENST00000436886	ENST00000438029		ChiTaRS3.1			AK225627	GATS	chr7	99818799	+	C7orf25	chr7	42971771	-
intron-5UTR	ENST00000372014	ENST00000372014		ChiTaRS3.1			AA427757	MRPL14	chr6	44081649	+	MRPL14	chr6	44095124	-
3UTR-3CDS	ENST00000340857	ENST00000374672		ChiTaRS3.1			AW748267	H1F0	chr22	38202146	-	KLF4	chr9	110248043	-
intron-intron	ENST00000371222	ENST00000215882		ChiTaRS3.1			CD614307	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000451283		ChiTaRS3.1			CD614307	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000461267		ChiTaRS3.1			CD614307	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000360416	ENST00000434513		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000361221		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000452522		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375415		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375420		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000469726		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000375408		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000360416	ENST00000167825		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000434513		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000361221		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000452522		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375415		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375420		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000469726		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000375408		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000379980	ENST00000167825		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000434513		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000361221		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000452522		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375415		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375420		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000469726		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000375408		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000396239	ENST00000167825		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000434513		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000361221		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000452522		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375415		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375420		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000469726		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000375408		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000269243	ENST00000167825		ChiTaRS3.1			T33537	MYH10	chr17	8377725	+	ARHGEF10L	chr1	18021032	-
intron-intron	ENST00000474524	ENST00000474524		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000474524	ENST00000273432		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000474524	ENST00000491549		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000474524	ENST00000422248		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000474524	ENST00000309237		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000273432	ENST00000474524		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000273432	ENST00000273432		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000273432	ENST00000491549		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000273432	ENST00000422248		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000273432	ENST00000309237		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000491549	ENST00000474524		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000491549	ENST00000273432		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000491549	ENST00000491549		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000491549	ENST00000422248		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000491549	ENST00000309237		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000422248	ENST00000474524		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000422248	ENST00000273432		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000422248	ENST00000491549		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000422248	ENST00000422248		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000422248	ENST00000309237		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000309237	ENST00000474524		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000309237	ENST00000273432		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000309237	ENST00000491549		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000309237	ENST00000422248		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000309237	ENST00000309237		ChiTaRS3.1			CA312497	MED12L	chr3	151012293	+	MED12L	chr3	151012425	-
intron-intron	ENST00000506722	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000506722	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000394537	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000357077	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000264366	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000509550	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000510275	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000506722		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000394537		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000357077		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000264366		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000509550		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000510275		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
intron-intron	ENST00000504887	ENST00000504887		ChiTaRS3.1			AA782337	ANK2	chr4	114273906	+	ANK2	chr4	114276867	-
5CDS-intron	ENST00000426256	ENST00000361525		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000366940		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000361395		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000366938		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000359162		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000493603		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000463665		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000487276		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000493748		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000471371		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000391890		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000366937		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000408911		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000426256	ENST00000360012		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000361525		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000366940		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000361395		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000366938		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000359162		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000493603		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000463665		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000487276		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000493748		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000471371		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000391890		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000366937		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000408911		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000326132	ENST00000360012		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000361525		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000366940		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000361395		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000366938		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000359162		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000493603		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000463665		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000487276		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000493748		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000471371		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000391890		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000366937		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000408911		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
5CDS-intron	ENST00000266252	ENST00000360012		ChiTaRS3.1			BG333167	RNF185	chr22	31597528	+	ESRRG	chr1	217047131	-
intron-3UTR	ENST00000445912	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000445912	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000445912	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000445912	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000445912	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000252034	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000252034	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000252034	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000252034	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000252034	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000358929	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000358929	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000358929	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000358929	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000358929	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000320492	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000320492	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000320492	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000320492	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000320492	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000414324	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000414324	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000414324	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000414324	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000414324	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000380562	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000380562	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000380562	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000380562	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000380562	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380575	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380575	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380575	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380575	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380575	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380584	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380584	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380584	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380584	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380584	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000458204	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000458204	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000458204	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000458204	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000458204	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000357036	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000357036	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000357036	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000357036	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000357036	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000429192	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000429192	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000429192	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000429192	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000429192	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380553	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380553	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380553	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380553	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380553	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380576	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380576	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-3UTR	ENST00000380576	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380576	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
3UTR-intron	ENST00000380576	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000320399	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000320399	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000320399	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000320399	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000320399	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000466878	ENST00000263867		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000466878	ENST00000409921		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3UTR	ENST00000466878	ENST00000409670		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000466878	ENST00000409724		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-intron	ENST00000466878	ENST00000483659		ChiTaRS3.1			AI424857	ELN	chr7	73483940	-	CAPG	chr2	85621995	+
intron-3CDS	ENST00000340666	ENST00000381249		ChiTaRS3.1			AW965197	SYN1	chrX	47446105	-	RDH14	chr2	18736702	+
intron-5UTR	ENST00000340666	ENST00000468071		ChiTaRS3.1			AW965197	SYN1	chrX	47446105	-	RDH14	chr2	18736702	+
intron-3CDS	ENST00000295987	ENST00000381249		ChiTaRS3.1			AW965197	SYN1	chrX	47446105	-	RDH14	chr2	18736702	+
intron-5UTR	ENST00000295987	ENST00000468071		ChiTaRS3.1			AW965197	SYN1	chrX	47446105	-	RDH14	chr2	18736702	+
3UTR-3UTR	ENST00000413393	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000413393	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000413393	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000413393	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000413393	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000413393	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000413393	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000436190	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000436190	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000436190	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000436190	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000436190	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000436190	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000436190	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000300249	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000300249	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000300249	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000300249	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000300249	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000300249	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000300249	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000538170	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000538170	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000538170	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000538170	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000538170	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000538170	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000538170	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000588910	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000588910	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000588910	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000588910	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-intron	ENST00000588910	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000588910	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-intron	ENST00000588910	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000589699	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000589699	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000589699	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000589699	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000589699	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-3UTR	ENST00000589699	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
3UTR-intron	ENST00000589699	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000590793	ENST00000413393		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000590793	ENST00000436190		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000590793	ENST00000300249		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000590793	ENST00000538170		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-intron	ENST00000590793	ENST00000588910		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3UTR	ENST00000590793	ENST00000589699		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-intron	ENST00000590793	ENST00000590793		ChiTaRS3.1			U90437	MAPRE2	chr18	32720750	-	MAPRE2	chr18	32721754	+
intron-3CDS	ENST00000375300	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000375300	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375300	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375300	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375300	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375300	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000375300	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000292055	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000292055	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000292055	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000292055	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000292055	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000292055	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000292055	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000375288	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000375288	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375288	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375288	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375288	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000375288	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000375288	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000434315	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000434315	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000434315	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000434315	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000434315	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000434315	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000434315	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000542607	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000542607	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000542607	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000542607	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000542607	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000542607	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000542607	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000446921	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000446921	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000446921	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000446921	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000446921	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000446921	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000446921	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000488337	ENST00000375300		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-3CDS	ENST00000488337	ENST00000292055		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000488337	ENST00000375288		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000488337	ENST00000434315		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000488337	ENST00000542607		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-5UTR	ENST00000488337	ENST00000446921		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000488337	ENST00000488337		ChiTaRS3.1			BQ368987	SIK3	chr11	116732973	+	SIK3	chr11	116744734	-
intron-intron	ENST00000412704	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000412704	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000412704	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000412704	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000412704	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000412704	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000376887	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000536256	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000431522	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000538287	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000412704		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000376887		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000536256		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000431522		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000538287		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000474158	ENST00000474158		ChiTaRS3.1			DW412347	ABCC4	chr13	95733281	-	ABCC4	chr13	95735059	-
intron-intron	ENST00000341170	ENST00000458244		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000341170	ENST00000293774		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000341170	ENST00000551956		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000354801	ENST00000458244		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000354801	ENST00000293774		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000354801	ENST00000551956		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000484708	ENST00000458244		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-intron	ENST00000484708	ENST00000293774		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
intron-5UTR	ENST00000484708	ENST00000551956		ChiTaRS3.1			DA442077	TSTD2	chr9	100368571	+	KRT4	chr12	53207900	-
Frame-shit	ENST00000433674	ENST00000433674		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
Frame-shit	ENST00000433674	ENST00000295006		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
5CDS-intron	ENST00000433674	ENST00000474026		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
Frame-shit	ENST00000295006	ENST00000433674		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
Frame-shit	ENST00000295006	ENST00000295006		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
5CDS-intron	ENST00000295006	ENST00000474026		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
intron-3CDS	ENST00000474026	ENST00000433674		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
intron-3CDS	ENST00000474026	ENST00000295006		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
intron-intron	ENST00000474026	ENST00000474026		ChiTaRS3.1			BF880017	CAPN2	chr1	223943329	-	CAPN2	chr1	223940607	+
3UTR-3CDS	ENST00000299084	ENST00000174618		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-5UTR	ENST00000299084	ENST00000575374		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-3UTR	ENST00000299084	ENST00000575394		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3CDS	ENST00000561205	ENST00000174618		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-5UTR	ENST00000561205	ENST00000575374		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3UTR	ENST00000561205	ENST00000575394		ChiTaRS3.1			BE046907	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-intron	ENST00000452533	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000452533	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000452533	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000452533	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000452533	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000553257	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000553257	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000553257	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000553257	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000553257	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000549701	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000549701	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000549701	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000549701	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000549701	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000358214	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000358214	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000358214	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000358214	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000358214	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000548671	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000548671	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000548671	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000548671	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000548671	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000266481	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000266481	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000266481	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000266481	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000266481	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000547312	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000547312	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000547312	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000547312	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000547312	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000414834	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000414834	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000414834	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000414834	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000414834	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000381000	ENST00000334206		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000381000	ENST00000296733		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000381000	ENST00000381375		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000381000	ENST00000322374		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000381000	ENST00000331730		ChiTaRS3.1			DA736127	DNM1L	chr12	32879412	-	CDC20B	chr5	54460646	+
intron-intron	ENST00000435803	ENST00000435803		ChiTaRS3.1			BF898207	ABCA13	chr7	48399048	-	ABCA13	chr7	48398936	+
intron-intron	ENST00000435803	ENST00000544596		ChiTaRS3.1			BF898207	ABCA13	chr7	48399048	-	ABCA13	chr7	48398936	+
intron-intron	ENST00000544596	ENST00000435803		ChiTaRS3.1			BF898207	ABCA13	chr7	48399048	-	ABCA13	chr7	48398936	+
intron-intron	ENST00000544596	ENST00000544596		ChiTaRS3.1			BF898207	ABCA13	chr7	48399048	-	ABCA13	chr7	48398936	+
intron-3UTR	ENST00000286713	ENST00000286713		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000286713	ENST00000538954		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000286713	ENST00000347359		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000538954	ENST00000286713		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000538954	ENST00000538954		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000538954	ENST00000347359		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000347359	ENST00000286713		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000347359	ENST00000538954		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-3UTR	ENST00000347359	ENST00000347359		ChiTaRS3.1			CN415527	STOM	chr9	124103238	+	STOM	chr9	124103186	-
intron-intron	ENST00000375394	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000375394	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000375394	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000488648	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000488648	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000544581	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000544581	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000448219	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000448219	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000471547	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000471547	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000429465	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000429465	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000476338	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000476338	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000412823	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000412823	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000480914	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000480914	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000383336	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000383336	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000461360	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000461360	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-intron	ENST00000421789	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
5CDS-3UTR	ENST00000421789	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000375394		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000488648		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000544581		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000448219		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000471547		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000429465		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000476338		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000412823		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000480914		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000383336		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000461360		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-intron	ENST00000466463	ENST00000421789		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
intron-3UTR	ENST00000466463	ENST00000466463		ChiTaRS3.1			CK724897	SKIV2L	chr6	3268880	-	SKIV2L	chr6	3269790	-
Frame-shit	ENST00000260970	ENST00000260970		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000260970	ENST00000409714		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000462903		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000448752		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000482772		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000409714	ENST00000260970		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000409714	ENST00000409714		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000462903		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000448752		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000482772		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000260970		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000409714		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000462903		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000448752		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000482772		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000448752	ENST00000260970		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000448752	ENST00000409714		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000462903		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000448752		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000482772		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000260970		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000409714		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000462903		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000448752		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000482772		ChiTaRS3.1			CA428637	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000354570	ENST00000354570		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000354570	ENST00000454590		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000354570	ENST00000544465		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000354570	ENST00000438100		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-5UTR	ENST00000354570	ENST00000432797		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000454590	ENST00000354570		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000454590	ENST00000454590		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000454590	ENST00000544465		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000454590	ENST00000438100		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-5UTR	ENST00000454590	ENST00000432797		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000544465	ENST00000354570		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000544465	ENST00000454590		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000544465	ENST00000544465		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000544465	ENST00000438100		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-5UTR	ENST00000544465	ENST00000432797		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000438100	ENST00000354570		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000438100	ENST00000454590		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000438100	ENST00000544465		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000438100	ENST00000438100		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-5UTR	ENST00000438100	ENST00000432797		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000432797	ENST00000354570		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000432797	ENST00000454590		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000432797	ENST00000544465		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-3CDS	ENST00000432797	ENST00000438100		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
intron-5UTR	ENST00000432797	ENST00000432797		ChiTaRS3.1			AA368787	MAP7	chr6	136871551	+	MAP7	chr6	136742938	-
3UTR-3UTR	ENST00000268989	ENST00000290551		ChiTaRS3.1			BI060627	SGSM2	chr17	2283205	-	BTG2	chr1	203277315	+
3UTR-3UTR	ENST00000426855	ENST00000290551		ChiTaRS3.1			BI060627	SGSM2	chr17	2283205	-	BTG2	chr1	203277315	+
intron-3UTR	ENST00000574563	ENST00000290551		ChiTaRS3.1			BI060627	SGSM2	chr17	2283205	-	BTG2	chr1	203277315	+
3UTR-intron	ENST00000533141	ENST00000396634		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000376806		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000376809		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000376802		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000431930		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000444289		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000551578		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000551120		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000552193		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000416096		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000443552		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000417978		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000547112		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000552498		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000549869		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000442939		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000457879		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000438861		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000547271		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000453975		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000547522		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000383605		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000383619		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000549224		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000376822		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000456012		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000550728		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000450342		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000454091		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000488889		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000552493		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000533141	ENST00000414592		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000396634		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000376806		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000376809		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000376802		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000431930		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000444289		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000551578		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000551120		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000552193		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000416096		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000443552		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000417978		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000547112		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000552498		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000549869		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000442939		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000457879		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000438861		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000547271		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000453975		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000547522		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000383605		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000383619		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000549224		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000376822		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000456012		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000550728		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000450342		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000454091		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000488889		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000552493		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000399817	ENST00000414592		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000396634		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000376806		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000376809		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000376802		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000431930		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000444289		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000551578		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000551120		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000552193		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000416096		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000443552		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000417978		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000547112		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000552498		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000549869		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000442939		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000457879		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000438861		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000547271		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000453975		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000547522		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000383605		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000383619		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000549224		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000376822		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000456012		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000550728		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000450342		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000454091		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000488889		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000552493		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
3UTR-intron	ENST00000602569	ENST00000414592		ChiTaRS3.1			BF852037	IFITM2	chr11	309190	-	HLA-A	chr6	1424585	+
intron-3CDS	ENST00000391976	ENST00000391976		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000391976	ENST00000310931		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000391976	ENST00000391975		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000391976	ENST00000427183		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000391976	ENST00000476807		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000310931	ENST00000391976		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000310931	ENST00000310931		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000310931	ENST00000391975		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000310931	ENST00000427183		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000310931	ENST00000476807		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000391975	ENST00000391976		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000391975	ENST00000310931		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000391975	ENST00000391975		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000391975	ENST00000427183		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000391975	ENST00000476807		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000427183	ENST00000391976		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000427183	ENST00000310931		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000427183	ENST00000391975		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000427183	ENST00000427183		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000427183	ENST00000476807		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000476807	ENST00000391976		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000476807	ENST00000310931		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000476807	ENST00000391975		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000476807	ENST00000427183		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-intron	ENST00000476807	ENST00000476807		ChiTaRS3.1			BI050287	HDLBP	chr2	242187749	+	HDLBP	chr2	242194910	-
intron-3CDS	ENST00000541179	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541179	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541179	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541179	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000541179	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000541179	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000541179	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379749	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379749	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379749	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379749	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379749	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379749	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000379749	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379747	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379747	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379747	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379747	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379747	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379747	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000379747	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379743	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379743	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379743	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379743	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379743	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379743	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000379743	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379742	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379742	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379742	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000379742	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379742	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000379742	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000379742	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541481	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541481	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541481	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000541481	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000541481	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000541481	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000541481	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000497145	ENST00000541179		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000497145	ENST00000379749		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000497145	ENST00000379747		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000497145	ENST00000379743		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000497145	ENST00000379742		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-intron	ENST00000497145	ENST00000541481		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-5UTR	ENST00000497145	ENST00000497145		ChiTaRS3.1			AI751337	POSTN	chr13	38153029	+	POSTN	chr13	38145534	-
intron-3CDS	ENST00000413366	ENST00000397195		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-3UTR	ENST00000413366	ENST00000572915		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-intron	ENST00000413366	ENST00000451360		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-3CDS	ENST00000583361	ENST00000397195		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-3UTR	ENST00000583361	ENST00000572915		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-intron	ENST00000583361	ENST00000451360		ChiTaRS3.1			L13387	PRKCA	chr17	64411088	+	PAFAH1B1	chr17	2570340	+
intron-intron	ENST00000506502	ENST00000506502		ChiTaRS3.1			BU167877	RBM27	chr5	145668316	-	RBM27	chr5	145668376	+
intron-3UTR	ENST00000506502	ENST00000265271		ChiTaRS3.1			BU167877	RBM27	chr5	145668316	-	RBM27	chr5	145668376	+
3UTR-intron	ENST00000265271	ENST00000506502		ChiTaRS3.1			BU167877	RBM27	chr5	145668316	-	RBM27	chr5	145668376	+
3UTR-3UTR	ENST00000265271	ENST00000265271		ChiTaRS3.1			BU167877	RBM27	chr5	145668316	-	RBM27	chr5	145668376	+
In-frame	ENST00000360876	ENST00000360876		ChiTaRS3.1			AW368037	EIF3B	chr7	2419075	+	EIF3B	chr7	2409262	+
In-frame	ENST00000360876	ENST00000397011		ChiTaRS3.1			AW368037	EIF3B	chr7	2419075	+	EIF3B	chr7	2409262	+
In-frame	ENST00000397011	ENST00000360876		ChiTaRS3.1			AW368037	EIF3B	chr7	2419075	+	EIF3B	chr7	2409262	+
In-frame	ENST00000397011	ENST00000397011		ChiTaRS3.1			AW368037	EIF3B	chr7	2419075	+	EIF3B	chr7	2409262	+
intron-intron	ENST00000317276	ENST00000520810		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000416505		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000519735		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000520835		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000379708		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000518983		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000522147		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000317276	ENST00000522785		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000520810		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000416505		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000519735		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000520835		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000379708		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000518983		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000522147		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000581082	ENST00000522785		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000520810		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000416505		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000519735		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000520835		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000379708		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000518983		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000522147		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000578089	ENST00000522785		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000520810		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000416505		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000519735		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000520835		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000379708		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000518983		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000522147		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000354903	ENST00000522785		ChiTaRS3.1			BC110917	PER1	chr17	8052557	-	IKBKB	chr8	42183128	+
intron-intron	ENST00000389153	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000389153		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000608853		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000377617		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000550104		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000542287		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000535949		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000549455		ChiTaRS3.1			BF842587	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000329957	ENST00000329957		ChiTaRS3.1			BM922757	MOB2	chr11	1754879	-	MOB2	chr11	1775104	-
intron-intron	ENST00000329957	ENST00000526462		ChiTaRS3.1			BM922757	MOB2	chr11	1754879	-	MOB2	chr11	1775104	-
intron-intron	ENST00000526462	ENST00000329957		ChiTaRS3.1			BM922757	MOB2	chr11	1754879	-	MOB2	chr11	1775104	-
intron-intron	ENST00000526462	ENST00000526462		ChiTaRS3.1			BM922757	MOB2	chr11	1754879	-	MOB2	chr11	1775104	-
intron-5UTR	ENST00000570164	ENST00000221801		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-intron	ENST00000570164	ENST00000593503		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-5UTR	ENST00000327237	ENST00000221801		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-intron	ENST00000327237	ENST00000593503		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-5UTR	ENST00000567994	ENST00000221801		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-intron	ENST00000567994	ENST00000593503		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-5UTR	ENST00000430477	ENST00000221801		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
intron-intron	ENST00000430477	ENST00000593503		ChiTaRS3.1			BU556777	C16orf58	chr16	31505078	-	FBL	chr19	40336999	-
Frame-shit	ENST00000343550	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000343550	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000343550	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000343550	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000343550	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
5CDS-intron	ENST00000343550	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000222305	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000222305	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000222305	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000222305	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000222305	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
5CDS-intron	ENST00000222305	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000595068	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000595068	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000595068	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000595068	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
Frame-shit	ENST00000595068	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
5CDS-intron	ENST00000595068	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000379134	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000379134	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000379134	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000379134	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000379134	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-intron	ENST00000379134	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000594064	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000594064	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000594064	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000594064	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000594064	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-intron	ENST00000594064	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000600341	ENST00000343550		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000600341	ENST00000222305		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000600341	ENST00000595068		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000600341	ENST00000379134		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-3CDS	ENST00000600341	ENST00000594064		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
intron-intron	ENST00000600341	ENST00000600341		ChiTaRS3.1			S50537	USF2	chr19	35760006	-	USF2	chr19	35760565	+
3UTR-3UTR	ENST00000418930	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000418930	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000418930	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000418930	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000418930	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000418930	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000256117	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000416274	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000519128	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-3UTR	ENST00000517476	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000418930		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000256117		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000416274		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000519128		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000517476		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
3UTR-3UTR	ENST00000521429	ENST00000521429		ChiTaRS3.1			BE828067	E2F5	chr8	86126569	-	E2F5	chr8	86126200	+
intron-intron	ENST00000289228	ENST00000412585		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-intron	ENST00000289228	ENST00000425848		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-intron	ENST00000289228	ENST00000450871		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-intron	ENST00000289228	ENST00000359635		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-intron	ENST00000289228	ENST00000435618		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-3UTR	ENST00000289228	ENST00000421349		ChiTaRS3.1			BU679127	ACTR1B	chr2	98272524	+	HLA-B	chr6	2655608	-
intron-intron	ENST00000513024	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000513024	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000513024	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000513024	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000513024	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509638	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509638	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509638	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509638	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000508501	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000508501	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000508501	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000508501	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512946	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512946	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512946	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512946	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000313860	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000313860	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000313860	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000313860	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512632	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512632	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512632	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512632	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512820	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512820	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000512820	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000512820	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000503057	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000503057	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000503057	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000503057	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000511496	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000511496	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000511496	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000511496	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000514096	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000514096	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000514096	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000514096	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509277	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509277	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509277	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509277	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000396595	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000396595	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000396595	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000396595	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000381753	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000381753	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000381753	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000381753	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509454	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509454	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000509454	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000509454	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000420083		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000515785	ENST00000449870		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000515785	ENST00000318511		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000407004		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000589998		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000250241		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000592763		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000588657		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000515785	ENST00000590261		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-3UTR	ENST00000515785	ENST00000586544		ChiTaRS3.1			AW268677	LIMCH1	chr4	41630358	-	ILF3	chr19	10803041	-
intron-intron	ENST00000406337	ENST00000262367		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000406337	ENST00000382070		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000265713	ENST00000262367		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000265713	ENST00000382070		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000396930	ENST00000262367		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000396930	ENST00000382070		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000485568	ENST00000262367		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
intron-intron	ENST00000485568	ENST00000382070		ChiTaRS3.1			AY442917	KAT6A	chr8	41793848	+	CREBBP	chr16	3907401	+
3UTR-3UTR	ENST00000368984	ENST00000423313		ChiTaRS3.1			BQ183447	HTRA1	chr10	124274255	-	KIAA0040	chr1	175127166	+
3UTR-3UTR	ENST00000368984	ENST00000444639		ChiTaRS3.1			BQ183447	HTRA1	chr10	124274255	-	KIAA0040	chr1	175127166	+
3UTR-intron	ENST00000368984	ENST00000545251		ChiTaRS3.1			BQ183447	HTRA1	chr10	124274255	-	KIAA0040	chr1	175127166	+
3UTR-intron	ENST00000368984	ENST00000567124		ChiTaRS3.1			BQ183447	HTRA1	chr10	124274255	-	KIAA0040	chr1	175127166	+
3UTR-3UTR	ENST00000320033	ENST00000320033		ChiTaRS3.1			BM725007	ARL4D	chr17	41478316	-	ARL4D	chr17	41478342	+
intron-intron	ENST00000336861	ENST00000486149		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000336861	ENST00000376296		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000246635	ENST00000486149		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000246635	ENST00000376296		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000587544	ENST00000486149		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000587544	ENST00000376296		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000587118	ENST00000486149		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-intron	ENST00000587118	ENST00000376296		ChiTaRS3.1			DA764817	KRT13	chr17	39661554	-	MUC21	chr6	2248357	+
intron-3CDS	ENST00000177742	ENST00000366671		ChiTaRS3.1			BF780087	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000177742	ENST00000282549		ChiTaRS3.1			BF780087	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000366671		ChiTaRS3.1			BF780087	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000282549		ChiTaRS3.1			BF780087	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
3UTR-3UTR	ENST00000469172	ENST00000272167		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
3UTR-3UTR	ENST00000469172	ENST00000366837		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
3UTR-intron	ENST00000469172	ENST00000467015		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000265866	ENST00000272167		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000265866	ENST00000366837		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-intron	ENST00000265866	ENST00000467015		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000441000	ENST00000272167		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000441000	ENST00000366837		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-intron	ENST00000441000	ENST00000467015		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000354695	ENST00000272167		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-3UTR	ENST00000354695	ENST00000366837		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
5CDS-intron	ENST00000354695	ENST00000467015		ChiTaRS3.1			BF513447	HNRNPH3	chr10	70101743	-	EPHX1	chr1	226033214	+
intron-intron	ENST00000543385	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000543385		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000336727		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000344733		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000382788		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000306648		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000338806		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000508158		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000538395		ChiTaRS3.1			BE550447	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-3UTR	ENST00000304987	ENST00000310653		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000304987	ENST00000336083		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000304987	ENST00000536566		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000304987	ENST00000541588		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000533868	ENST00000310653		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-3UTR	ENST00000533868	ENST00000336083		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000533868	ENST00000536566		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
intron-intron	ENST00000533868	ENST00000541588		ChiTaRS3.1			AW891077	SIK2	chr11	111535864	+	RAB6A	chr11	73388284	+
5CDS-intron	ENST00000358344	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000358344	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000358344	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000506339	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000506339	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000506339	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000355836	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000355836	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000355836	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000514633	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000514633	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000514633	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000515193	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000515193	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000515193	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000506259	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000506259	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000506259	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000504898	ENST00000595125		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-3UTR	ENST00000504898	ENST00000423777		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
5CDS-intron	ENST00000504898	ENST00000600336		ChiTaRS3.1			BF000687	HNRNPAB	chr5	177631976	-	ATF5	chr19	50437083	-
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			AW872697	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3CDS	ENST00000285930	ENST00000281394		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-3CDS	ENST00000285930	ENST00000294952		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-3CDS	ENST00000285930	ENST00000449090		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-intron	ENST00000285930	ENST00000476199		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-3CDS	ENST00000489022	ENST00000281394		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-3CDS	ENST00000489022	ENST00000294952		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-3CDS	ENST00000489022	ENST00000449090		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-intron	ENST00000489022	ENST00000476199		ChiTaRS3.1			AI654627	AKR1B1	chr7	134127339	+	PPP1R21	chr2	48725693	-
intron-intron	ENST00000382368	ENST00000468573		ChiTaRS3.1			AI205037	FBXL18	chr7	5521506	+	CHRM3	chr1	240031809	-
intron-intron	ENST00000382368	ENST00000255380		ChiTaRS3.1			AI205037	FBXL18	chr7	5521506	+	CHRM3	chr1	240031809	-
intron-intron	ENST00000453700	ENST00000468573		ChiTaRS3.1			AI205037	FBXL18	chr7	5521506	+	CHRM3	chr1	240031809	-
intron-intron	ENST00000453700	ENST00000255380		ChiTaRS3.1			AI205037	FBXL18	chr7	5521506	+	CHRM3	chr1	240031809	-
intron-3CDS	ENST00000397063	ENST00000397063		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000397062		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000446151		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000464747		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000397063		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000397062		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000446151		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000464747		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000397063		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000397062		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000446151		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000464747		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000397063		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000397062		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000446151		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000464747		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000397063		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000397062		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000446151		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000464747		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			BU679267	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000485577	ENST00000485577		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000485577	ENST00000393313		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000485577	ENST00000265827		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000485577	ENST00000393312		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000393313	ENST00000485577		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000393313	ENST00000393313		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000393313	ENST00000265827		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000393313	ENST00000393312		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000265827	ENST00000485577		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000265827	ENST00000393313		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000265827	ENST00000265827		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000265827	ENST00000393312		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000393312	ENST00000485577		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000393312	ENST00000393313		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-3UTR	ENST00000393312	ENST00000265827		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000393312	ENST00000393312		ChiTaRS3.1			AI887707	ZNF800	chr7	127010463	+	ZNF800	chr7	127010520	-
intron-intron	ENST00000295225	ENST00000295225		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000295225	ENST00000377181		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000295225	ENST00000360990		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000295225	ENST00000468529		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000377181	ENST00000295225		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000377181	ENST00000377181		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000377181	ENST00000360990		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000377181	ENST00000468529		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000360990	ENST00000295225		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000360990	ENST00000377181		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000360990	ENST00000360990		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000360990	ENST00000468529		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000468529	ENST00000295225		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000468529	ENST00000377181		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000468529	ENST00000360990		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
intron-intron	ENST00000468529	ENST00000468529		ChiTaRS3.1			BC019877	KCNIP3	chr2	95969228	+	KCNIP3	chr2	95967435	+
3UTR-3UTR	ENST00000271857	ENST00000271857		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000271857	ENST00000368661		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000271857	ENST00000484014		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000368661	ENST00000271857		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000368661	ENST00000368661		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000368661	ENST00000484014		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000484014	ENST00000271857		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000484014	ENST00000368661		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
3UTR-3UTR	ENST00000484014	ENST00000484014		ChiTaRS3.1			AW673387	SLC27A3	chr1	153752497	-	SLC27A3	chr1	153752534	+
intron-intron	ENST00000566780	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000283558		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375630		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000487903		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375645		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000419448		ChiTaRS3.1			BF871847	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
Frame-shit	ENST00000324932	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000324932	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000324932	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000324932	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000324932	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000324932	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000324932	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000359171	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000359171	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000359171	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000359171	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000359171	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000359171	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000359171	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000355260	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000355260	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000355260	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000355260	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000355260	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000355260	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000355260	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397004	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397004	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397004	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397004	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397004	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397004	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397004	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397007	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397007	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
Frame-shit	ENST00000397007	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397007	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397007	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397007	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
5CDS-3UTR	ENST00000397007	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3CDS	ENST00000488828	ENST00000380158		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3CDS	ENST00000488828	ENST00000264572		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3CDS	ENST00000488828	ENST00000408927		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3UTR	ENST00000488828	ENST00000512857		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3UTR	ENST00000488828	ENST00000453712		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3UTR	ENST00000488828	ENST00000339360		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-3UTR	ENST00000488828	ENST00000408900		ChiTaRS3.1			AF133331	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214557	+
intron-intron	ENST00000264501	ENST00000269033		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000264501	ENST00000540801		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000264501	ENST00000324677		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000264501	ENST00000582084		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000264501	ENST00000590153		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000264501	ENST00000579954		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000269033		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000540801		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000324677		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000582084		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000590153		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000455637	ENST00000579954		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000269033		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000540801		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000324677		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000582084		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000590153		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000388738	ENST00000579954		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000269033		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000540801		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000324677		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000582084		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000590153		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
intron-intron	ENST00000495260	ENST00000579954		ChiTaRS3.1			AW856087	KIAA1109	chr4	123159566	-	SSH2	chr17	28043828	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BQ329707	MALAT1	chr11	65267369	-	MALAT1	chr11	65267892	-
intron-3CDS	ENST00000371872	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371872	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371872	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371872	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371872	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371872	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371872	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000439388	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000439388	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000439388	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000439388	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000439388	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000439388	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000439388	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000422262	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000422262	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000422262	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000422262	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000422262	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000422262	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000422262	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371868	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371868	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371868	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371868	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371868	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371868	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371868	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000469828	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000469828	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000469828	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000469828	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000469828	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000469828	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000469828	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371867	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371867	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000371867	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371867	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371867	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371867	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000371867	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000298628	ENST00000371872		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000298628	ENST00000439388		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-3CDS	ENST00000298628	ENST00000422262		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000298628	ENST00000371868		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000298628	ENST00000469828		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000298628	ENST00000371867		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
intron-intron	ENST00000298628	ENST00000298628		ChiTaRS3.1			BC033217	SARDH	chr9	136582509	+	SARDH	chr9	136578219	-
5UTR-3CDS	ENST00000255040	ENST00000255040		ChiTaRS3.1			CB164297	APCS	chr1	159557681	-	APCS	chr1	159557963	+
intron-intron	ENST00000429741	ENST00000370449		ChiTaRS3.1			CD358047	SEPT7P2	chr7	45806524	-	ABCC2	chr10	101608951	+
intron-intron	ENST00000429741	ENST00000370434		ChiTaRS3.1			CD358047	SEPT7P2	chr7	45806524	-	ABCC2	chr10	101608951	+
intron-intron	ENST00000429741	ENST00000496621		ChiTaRS3.1			CD358047	SEPT7P2	chr7	45806524	-	ABCC2	chr10	101608951	+
5CDS-intron	ENST00000335263	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000335263	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000335263	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000335263	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000335263	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000424963	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000424963	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000424963	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000424963	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000424963	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000322340	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000322340	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000322340	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000322340	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000322340	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000499851	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000499851	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000499851	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000499851	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000499851	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000342702	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000342702	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000342702	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000342702	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000342702	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556807	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556807	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556807	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556807	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556807	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000558567	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000558567	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000558567	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000558567	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000558567	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
3UTR-intron	ENST00000299135	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
3UTR-intron	ENST00000299135	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
3UTR-intron	ENST00000299135	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
3UTR-intron	ENST00000299135	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
3UTR-intron	ENST00000299135	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000454394	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000454394	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000454394	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000454394	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000454394	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556511	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556511	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556511	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556511	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000556511	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000557186	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000557186	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000557186	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000557186	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000557186	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000545563	ENST00000336199		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000545563	ENST00000366540		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000545563	ENST00000366539		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000545563	ENST00000263826		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
5CDS-intron	ENST00000545563	ENST00000492957		ChiTaRS3.1			BF935477	WDR20	chr14	102675721	-	AKT3	chr1	243671210	+
intron-intron	ENST00000369981	ENST00000369981		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369981	ENST00000369985		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369981	ENST00000369977		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369981	ENST00000369975		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369981	ENST00000462633		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369985	ENST00000369981		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369985	ENST00000369985		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369985	ENST00000369977		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369985	ENST00000369975		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369985	ENST00000462633		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369977	ENST00000369981		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369977	ENST00000369985		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369977	ENST00000369977		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369977	ENST00000369975		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369977	ENST00000462633		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369975	ENST00000369981		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369975	ENST00000369985		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369975	ENST00000369977		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369975	ENST00000369975		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000369975	ENST00000462633		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000462633	ENST00000369981		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000462633	ENST00000369985		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000462633	ENST00000369977		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000462633	ENST00000369975		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-intron	ENST00000462633	ENST00000462633		ChiTaRS3.1			BF800087	MYO6	chr6	76474229	-	MYO6	chr6	76471333	+
intron-3CDS	ENST00000263207	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000263207	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000263207	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000344269	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000344269	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406522	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000406522	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000401994	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000401994	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000406259	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000406259	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000263207		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000344269		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000406522		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000401994		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-3CDS	ENST00000487793	ENST00000406259		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000487793	ENST00000487793		ChiTaRS3.1			AW998057	ARVCF	chr22	19957909	-	ARVCF	chr22	19963235	-
intron-intron	ENST00000310128	ENST00000206451		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000310128	ENST00000559123		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000310128	ENST00000382708		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000310128	ENST00000561435		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000310128	ENST00000470718		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000525550	ENST00000206451		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000525550	ENST00000559123		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000525550	ENST00000382708		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000525550	ENST00000561435		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000525550	ENST00000470718		ChiTaRS3.1			BI048257	KCNE3	chr11	74176021	-	PSME1	chr14	24606001	+
intron-intron	ENST00000409419	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409419	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409587	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409587	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000594085	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000594085	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409735	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409735	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000356508	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000356508	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409281	ENST00000263168		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-intron	ENST00000409281	ENST00000476936		ChiTaRS3.1			BE295537	PLD3	chr19	40884397	+	CAPZA1	chr1	113207809	-
intron-5UTR	ENST00000361669	ENST00000265724		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000361669	ENST00000543898		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000361669	ENST00000488737		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-5UTR	ENST00000546348	ENST00000265724		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000546348	ENST00000543898		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000546348	ENST00000488737		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-5UTR	ENST00000536043	ENST00000265724		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000536043	ENST00000543898		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000536043	ENST00000488737		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-5UTR	ENST00000439827	ENST00000265724		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000439827	ENST00000543898		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000439827	ENST00000488737		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-5UTR	ENST00000394720	ENST00000265724		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000394720	ENST00000543898		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
intron-intron	ENST00000394720	ENST00000488737		ChiTaRS3.1			AF345337	GRM3	chr7	86331484	-	ABCB1	chr7	87230396	-
3UTR-intron	ENST00000369817	ENST00000566813		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
3UTR-intron	ENST00000369817	ENST00000262506		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
intron-intron	ENST00000479366	ENST00000566813		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
intron-intron	ENST00000479366	ENST00000262506		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
3UTR-intron	ENST00000424325	ENST00000566813		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
3UTR-intron	ENST00000424325	ENST00000262506		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
3UTR-intron	ENST00000406022	ENST00000566813		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
3UTR-intron	ENST00000406022	ENST00000262506		ChiTaRS3.1			BQ771607	RPL10	chrX	153629200	-	CSNK2A2	chr16	58195561	+
intron-3CDS	ENST00000520791	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000520791	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000470487		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000309027		ChiTaRS3.1			BF591387	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-intron	ENST00000420696	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000420696	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000401534	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000559240	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000367897	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540236	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000560641	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000474046	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000485769	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000420696		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000401534		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000559240		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000367897		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000540236		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000560641		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000474046		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000485769		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-intron	ENST00000540246	ENST00000540246		ChiTaRS3.1			AA846997	PBX1	chr1	164551327	+	PBX1	chr1	164551582	-
intron-3UTR	ENST00000373166	ENST00000373166		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-5UTR	ENST00000373166	ENST00000462715		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373166	ENST00000373163		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373166	ENST00000373162		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373166	ENST00000373159		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-3UTR	ENST00000462715	ENST00000373166		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-5UTR	ENST00000462715	ENST00000462715		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000462715	ENST00000373163		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000462715	ENST00000373162		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000462715	ENST00000373159		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-3UTR	ENST00000373163	ENST00000373166		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-5UTR	ENST00000373163	ENST00000462715		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373163	ENST00000373163		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373163	ENST00000373162		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373163	ENST00000373159		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-3UTR	ENST00000373162	ENST00000373166		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-5UTR	ENST00000373162	ENST00000462715		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373162	ENST00000373163		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373162	ENST00000373162		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373162	ENST00000373159		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-3UTR	ENST00000373159	ENST00000373166		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-5UTR	ENST00000373159	ENST00000462715		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373159	ENST00000373163		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373159	ENST00000373162		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
intron-intron	ENST00000373159	ENST00000373159		ChiTaRS3.1			BU675677	TRAPPC3	chr1	36602409	+	TRAPPC3	chr1	36602492	-
5CDS-intron	ENST00000448838	ENST00000443503		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
5CDS-intron	ENST00000448838	ENST00000273179		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
5CDS-intron	ENST00000448838	ENST00000310189		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
5CDS-intron	ENST00000227868	ENST00000443503		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
5CDS-intron	ENST00000227868	ENST00000273179		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
5CDS-intron	ENST00000227868	ENST00000310189		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000430469	ENST00000443503		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000430469	ENST00000273179		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000430469	ENST00000310189		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000477173	ENST00000443503		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000477173	ENST00000273179		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
intron-intron	ENST00000477173	ENST00000310189		ChiTaRS3.1			BQ358867	PDHX	chr11	34981980	-	CTDSPL	chr3	38011567	-
3UTR-intron	ENST00000517417	ENST00000517417		ChiTaRS3.1			BG818157	PCDHGA1	chr5	140891106	+	PCDHGA1	chr5	140857653	+
3UTR-intron	ENST00000517417	ENST00000378105		ChiTaRS3.1			BG818157	PCDHGA1	chr5	140891106	+	PCDHGA1	chr5	140857653	+
intron-intron	ENST00000378105	ENST00000517417		ChiTaRS3.1			BG818157	PCDHGA1	chr5	140891106	+	PCDHGA1	chr5	140857653	+
intron-intron	ENST00000378105	ENST00000378105		ChiTaRS3.1			BG818157	PCDHGA1	chr5	140891106	+	PCDHGA1	chr5	140857653	+
intron-5UTR	ENST00000429781	ENST00000215912		ChiTaRS3.1			DA167607	LINC00476	chr9	98571324	-	PIK3IP1	chr22	31688474	-
intron-5UTR	ENST00000429781	ENST00000441972		ChiTaRS3.1			DA167607	LINC00476	chr9	98571324	-	PIK3IP1	chr22	31688474	-
intron-intron	ENST00000429781	ENST00000487265		ChiTaRS3.1			DA167607	LINC00476	chr9	98571324	-	PIK3IP1	chr22	31688474	-
intron-intron	ENST00000429781	ENST00000402249		ChiTaRS3.1			DA167607	LINC00476	chr9	98571324	-	PIK3IP1	chr22	31688474	-
Frame-shit	ENST00000400590	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000400590	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000320220	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000382466	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-intron	ENST00000542645	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000415724	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000422251	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000433372		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000331145		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000395759		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000325278		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-intron	ENST00000494731	ENST00000461101		ChiTaRS3.1			AK023167	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-intron	ENST00000395146	ENST00000358465		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000395146	ENST00000369543		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000395146	ENST00000450349		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000395146	ENST00000476908		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000307808	ENST00000358465		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000307808	ENST00000369543		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000307808	ENST00000450349		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000307808	ENST00000476908		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000544085	ENST00000358465		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000544085	ENST00000369543		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000544085	ENST00000450349		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000544085	ENST00000476908		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000511996	ENST00000358465		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000511996	ENST00000369543		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000511996	ENST00000450349		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000511996	ENST00000476908		ChiTaRS3.1			BF368587	AFF1	chr4	88040933	+	TRIM33	chr1	115026919	+
intron-intron	ENST00000400454	ENST00000378204		ChiTaRS3.1			BF749377	DSCAM	chr21	42162053	-	EXT1	chr8	118835666	-
intron-intron	ENST00000376062	ENST00000376062		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376062	ENST00000376055		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376062	ENST00000307677		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376062	ENST00000420653		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376055	ENST00000376062		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376055	ENST00000376055		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376055	ENST00000307677		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000376055	ENST00000420653		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000307677	ENST00000376062		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000307677	ENST00000376055		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000307677	ENST00000307677		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000307677	ENST00000420653		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000420653	ENST00000376062		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000420653	ENST00000376055		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000420653	ENST00000307677		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-intron	ENST00000420653	ENST00000420653		ChiTaRS3.1			BF356057	BCL2L1	chr20	30258733	+	BCL2L1	chr20	30258110	-
intron-3CDS	ENST00000373803	ENST00000373803		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373803	ENST00000359675		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373803	ENST00000349004		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373803	ENST00000373773		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373803	ENST00000540765		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000359675	ENST00000373803		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000359675	ENST00000359675		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000359675	ENST00000349004		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000359675	ENST00000373773		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000359675	ENST00000540765		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000349004	ENST00000373803		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000349004	ENST00000359675		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000349004	ENST00000349004		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000349004	ENST00000373773		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000349004	ENST00000540765		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373773	ENST00000373803		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373773	ENST00000359675		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373773	ENST00000349004		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373773	ENST00000373773		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000373773	ENST00000540765		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000540765	ENST00000373803		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000540765	ENST00000359675		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000540765	ENST00000349004		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000540765	ENST00000373773		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
intron-3CDS	ENST00000540765	ENST00000540765		ChiTaRS3.1			CB217677	NDRG3	chr20	35280344	-	NDRG3	chr20	35309294	-
Frame-shit	ENST00000254301	ENST00000254301		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000254301	ENST00000553755		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000254301	ENST00000554715		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-3CDS	ENST00000553755	ENST00000254301		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-intron	ENST00000553755	ENST00000553755		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-intron	ENST00000553755	ENST00000554715		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
Frame-shit	ENST00000554715	ENST00000254301		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000554715	ENST00000553755		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000554715	ENST00000554715		ChiTaRS3.1			BM969627	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
Frame-shit	ENST00000342922	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000342922	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000342922	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402799	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000402799	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000311027	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000311027	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000406482	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000406482	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000407859	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000407859	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000349238	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000349238	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395344	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000395344	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000395336	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000395336	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
Frame-shit	ENST00000402192	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
5CDS-intron	ENST00000402192	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000405573	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-intron	ENST00000405573	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000342922		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000402799		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000311027		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000406482		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000407859		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000349238		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000395344		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000395336		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000402192		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-3CDS	ENST00000489415	ENST00000405573		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
intron-intron	ENST00000489415	ENST00000489415		ChiTaRS3.1			AW363427	MADD	chr11	47311797	-	MADD	chr11	47331117	+
3UTR-3CDS	ENST00000534336	ENST00000288398		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-3CDS	ENST00000534336	ENST00000358278		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000560445		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000403994		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000357980		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000559556		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000559397		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000267996		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000334895		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000404484		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000560959		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000559281		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
3UTR-intron	ENST00000534336	ENST00000317516		ChiTaRS3.1			AW864167	MALAT1	chr11	65266579	-	TPM1	chr15	63351847	-
intron-5UTR	ENST00000455485	ENST00000455485		ChiTaRS3.1			BF335967	GUSBP11	chr22	24057325	+	GUSBP11	chr22	24032539	+
intron-intron	ENST00000324446	ENST00000324446		ChiTaRS3.1			CB242307	TTTY14	chrY	21152686	+	TTTY14	chrY	21152813	-
intron-3CDS	ENST00000520468	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000520468	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000520468	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000297564	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000297564	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000297564	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000520271	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000520271	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000520271	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000517682	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000517682	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000517682	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000524245	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000524245	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000524245	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000522940	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000522940	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000522940	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000518171	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000518171	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000518171	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000523016	ENST00000265343		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000523016	ENST00000378595		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-5UTR	ENST00000523016	ENST00000491831		ChiTaRS3.1			AI335947	COX6C	chr8	100899800	+	AFF4	chr5	132270576	+
intron-3CDS	ENST00000360655	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000360655	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000360655	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000209875		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000439541		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000550411		ChiTaRS3.1			BE083007	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-intron	ENST00000264071	ENST00000369519		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000264071	ENST00000480343		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000540257	ENST00000369519		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000540257	ENST00000480343		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000601152	ENST00000369519		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000601152	ENST00000480343		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000598006	ENST00000369519		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000598006	ENST00000480343		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000596926	ENST00000369519		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-intron	ENST00000596926	ENST00000480343		ChiTaRS3.1			AA683237	TUBB4A	chr19	6494933	+	RBM20	chr10	112494549	-
intron-3UTR	ENST00000379589	ENST00000379589		ChiTaRS3.1			AW608337	LHFP	chr13	39917398	+	LHFP	chr13	39917478	-
intron-intron	ENST00000379589	ENST00000495922		ChiTaRS3.1			AW608337	LHFP	chr13	39917398	+	LHFP	chr13	39917478	-
intron-3UTR	ENST00000495922	ENST00000379589		ChiTaRS3.1			AW608337	LHFP	chr13	39917398	+	LHFP	chr13	39917478	-
intron-intron	ENST00000495922	ENST00000495922		ChiTaRS3.1			AW608337	LHFP	chr13	39917398	+	LHFP	chr13	39917478	-
intron-intron	ENST00000392476	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000392476	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000430767	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000564509	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000585618	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000413679	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000436233	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000443798	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000591437	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000392476		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000430767		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000564509		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000585618		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000413679		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000436233		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000443798		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000591437		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
intron-intron	ENST00000431431	ENST00000431431		ChiTaRS3.1			DW443827	SEC14L1	chr17	75202257	+	SEC14L1	chr17	75202023	+
3UTR-3CDS	ENST00000310447	ENST00000292205		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
3UTR-3CDS	ENST00000310447	ENST00000368474		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
3UTR-3CDS	ENST00000310447	ENST00000368471		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
3UTR-intron	ENST00000310447	ENST00000471068		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000493642	ENST00000292205		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000493642	ENST00000368474		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000493642	ENST00000368471		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-intron	ENST00000493642	ENST00000471068		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000392925	ENST00000292205		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000392925	ENST00000368474		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-3CDS	ENST00000392925	ENST00000368471		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-intron	ENST00000392925	ENST00000471068		ChiTaRS3.1			BE939197	CASP2	chr7	143003096	-	ADAR	chr1	154562313	+
intron-intron	ENST00000218089	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000218089	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000218089	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000218089	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000218089	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000218089	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000469481	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000469481	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000469481	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000469481	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000469481	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000469481	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000354548	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000354548	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000354548	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000354548	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000354548	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000354548	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371160	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371160	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-3UTR	ENST00000371160	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-3UTR	ENST00000371160	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371160	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371160	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371157	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371157	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-3UTR	ENST00000371157	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-3UTR	ENST00000371157	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371157	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
3UTR-intron	ENST00000371157	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371145	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371145	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000371145	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000371145	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371145	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371145	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371144	ENST00000218089		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371144	ENST00000354548		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000371144	ENST00000371160		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-3UTR	ENST00000371144	ENST00000371157		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371144	ENST00000371145		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000371144	ENST00000371144		ChiTaRS3.1			AA508477	STAG2	chrX	123235746	+	STAG2	chrX	123235671	-
intron-intron	ENST00000193029	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000522874	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000361847	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000524214	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000561150	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000517966	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000523231	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000524370	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000522867	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000520266	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000519058	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000522534	ENST00000263707		ChiTaRS3.1			BU166617	MOK	chr14	102695512	-	TFCP2L1	chr2	122038664	+
intron-intron	ENST00000408388	ENST00000408388		ChiTaRS3.1			BF749187	PVT1	chr8	128812831	-	PVT1	chr8	128811824	+
intron-3UTR	ENST00000317555	ENST00000340855		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000537071		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000541269		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000422081		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000370441		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000490775		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000370443		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000427113		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000317555	ENST00000428056		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-3UTR	ENST00000498926	ENST00000340855		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000537071		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000541269		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000422081		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000370441		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000490775		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000370443		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000427113		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000498926	ENST00000428056		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-3UTR	ENST00000543955	ENST00000340855		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000537071		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000541269		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000422081		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000370441		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000490775		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000370443		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000427113		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000543955	ENST00000428056		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-3UTR	ENST00000454808	ENST00000340855		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000537071		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000541269		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000422081		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000370441		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000490775		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000370443		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000427113		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000454808	ENST00000428056		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-3UTR	ENST00000541034	ENST00000340855		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000537071		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000541269		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000422081		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000370441		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000490775		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000370443		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000427113		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
intron-intron	ENST00000541034	ENST00000428056		ChiTaRS3.1			BU735117	PGAM5	chr12	133299111	-	IDS	chrX	148560838	+
3UTR-intron	ENST00000370544	ENST00000374140		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000350696		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000317613		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000343817		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000394646		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000374136		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000462143		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000463806		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000342620		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000374134		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
3UTR-intron	ENST00000370544	ENST00000462403		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000374140		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000350696		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000317613		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000343817		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000394646		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000374136		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000462143		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000463806		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000342620		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000374134		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000370542	ENST00000462403		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000374140		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000350696		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000317613		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000343817		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000394646		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000374136		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000462143		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000463806		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000342620		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000374134		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
intron-intron	ENST00000489303	ENST00000462403		ChiTaRS3.1			T07447	LMO4	chr1	87813373	-	RGS3	chr9	116275846	-
5CDS-intron	ENST00000221455	ENST00000221455		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000221455	ENST00000391953		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000221455	ENST00000544944		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000391953	ENST00000221455		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000391953	ENST00000391953		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000391953	ENST00000544944		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000544944	ENST00000221455		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000544944	ENST00000391953		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
5CDS-intron	ENST00000544944	ENST00000544944		ChiTaRS3.1			AI936967	CLASRP	chr19	45563670	-	CLASRP	chr19	45571737	-
intron-intron	ENST00000338458	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000338458	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000338458	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000338458	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000338458	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000496106	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000496106	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000496106	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000496106	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000496106	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000498517	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000498517	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000498517	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000498517	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000498517	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000296315	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000296315	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000296315	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000296315	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000296315	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000413728	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000413728	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000413728	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000413728	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000413728	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000497267	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000497267	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000497267	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000497267	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000497267	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000495373	ENST00000394332		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000495373	ENST00000394333		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3UTR	ENST00000495373	ENST00000479035		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000495373	ENST00000245857		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-intron	ENST00000495373	ENST00000577407		ChiTaRS3.1			BU677197	ARHGEF3	chr3	56925201	-	RPL23	chr17	37006331	+
intron-3CDS	ENST00000429711	ENST00000448305		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000298845		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000424550		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000337425		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000380365		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000546329		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000429711	ENST00000539349		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-3CDS	ENST00000396957	ENST00000448305		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000298845		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000424550		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000337425		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000380365		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000546329		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396957	ENST00000539349		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-3CDS	ENST00000273223	ENST00000448305		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000298845		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000424550		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000337425		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000380365		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000546329		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000273223	ENST00000539349		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-3CDS	ENST00000435983	ENST00000448305		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000298845		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000424550		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000337425		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000380365		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000546329		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000435983	ENST00000539349		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-3CDS	ENST00000396953	ENST00000448305		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000298845		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000424550		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000337425		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000380365		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000546329		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-intron	ENST00000396953	ENST00000539349		ChiTaRS3.1			AA505147	RPL32	chr3	12877644	+	SERPINA9	chr14	94935855	+
intron-3CDS	ENST00000303230	ENST00000303230		ChiTaRS3.1			BX537747	HCN1	chr5	45262276	+	HCN1	chr5	45262433	-
intron-3UTR	ENST00000262244	ENST00000228506		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-intron	ENST00000262244	ENST00000412616		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-intron	ENST00000262244	ENST00000535413		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-3UTR	ENST00000603061	ENST00000228506		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-intron	ENST00000603061	ENST00000412616		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-intron	ENST00000603061	ENST00000535413		ChiTaRS3.1			BE930957	MOB3B	chr9	27393376	-	MLEC	chr12	121134823	-
intron-3UTR	ENST00000378609	ENST00000378609		ChiTaRS3.1			BI022537	GNB1	chr1	1716828	-	GNB1	chr1	1716745	+
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			BI022537	GNB1	chr1	1716828	-	GNB1	chr1	1716745	+
intron-3UTR	ENST00000472614	ENST00000378609		ChiTaRS3.1			BI022537	GNB1	chr1	1716828	-	GNB1	chr1	1716745	+
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			BI022537	GNB1	chr1	1716828	-	GNB1	chr1	1716745	+
intron-intron	ENST00000381340	ENST00000381340		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000545902		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000242737		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000381340		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000545902		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000242737		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000381340		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000545902		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000242737		ChiTaRS3.1			AA525297	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000428417	ENST00000428417		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000376014		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000400796		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000434578		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000376008		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000428417		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000376014		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000400796		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000434578		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000376008		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000428417		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000376014		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000400796		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000434578		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000376008		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000428417		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000376014		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000400796		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000434578		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000376008		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000428417		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000376014		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000400796		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000434578		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000376008		ChiTaRS3.1			CV427167	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-3CDS	ENST00000489520	ENST00000338034		ChiTaRS3.1			BQ073577	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000395962		ChiTaRS3.1			BQ073577	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3CDS	ENST00000489520	ENST00000426905		ChiTaRS3.1			BQ073577	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000609345		ChiTaRS3.1			BQ073577	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-intron	ENST00000489520	ENST00000578071		ChiTaRS3.1			BQ073577	RPSAP52	chr12	66221868	+	ELAC2	chr17	12899297	-
intron-3UTR	ENST00000534695	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534695	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534695	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000455725	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000531273	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000420461	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000378852	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534600	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000221957		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000592528		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000529334	ENST00000585479		ChiTaRS3.1			BE551507	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000400454	ENST00000577702		ChiTaRS3.1			R06057	DSCAM	chr21	41717981	-	DCAF7	chr17	61667668	+
intron-3UTR	ENST00000400454	ENST00000310827		ChiTaRS3.1			R06057	DSCAM	chr21	41717981	-	DCAF7	chr17	61667668	+
intron-intron	ENST00000400454	ENST00000431926		ChiTaRS3.1			R06057	DSCAM	chr21	41717981	-	DCAF7	chr17	61667668	+
intron-intron	ENST00000400454	ENST00000415273		ChiTaRS3.1			R06057	DSCAM	chr21	41717981	-	DCAF7	chr17	61667668	+
5CDS-intron	ENST00000445912	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000445912	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000445912	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000445912	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000445912	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000445912	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000252034	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000358929	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000320492	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000414324	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380562	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380575	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380584	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000458204	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000357036	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000429192	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380553	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000380576	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
5CDS-intron	ENST00000320399	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000414241		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000373493		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000524393		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000544435		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000373485		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000466878	ENST00000458695		ChiTaRS3.1			DB264407	ELN	chr7	73455580	+	RBBP4	chr1	33160535	-
intron-intron	ENST00000375587	ENST00000375587		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375587	ENST00000375579		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375587	ENST00000375576		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375579	ENST00000375587		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375579	ENST00000375579		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375579	ENST00000375576		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375576	ENST00000375587		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375576	ENST00000375579		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000375576	ENST00000375576		ChiTaRS3.1			BI494157	CENPP	chr9	95146404	+	CENPP	chr9	95146355	-
intron-intron	ENST00000309428	ENST00000247933		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000309428	ENST00000453894		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000309428	ENST00000509744		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000309428	ENST00000514224		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000585894	ENST00000247933		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000585894	ENST00000453894		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000585894	ENST00000509744		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000585894	ENST00000514224		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000543197	ENST00000247933		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000543197	ENST00000453894		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000543197	ENST00000509744		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000543197	ENST00000514224		ChiTaRS3.1			BE939137	FAM134C	chr17	40732512	-	IDUA	chr4	992408	-
intron-intron	ENST00000414318	ENST00000262493		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-3UTR	ENST00000414318	ENST00000262494		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000414318	ENST00000569295		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000253692	ENST00000262493		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-3UTR	ENST00000253692	ENST00000262494		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000253692	ENST00000569295		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000429383	ENST00000262493		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-3UTR	ENST00000429383	ENST00000262494		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000429383	ENST00000569295		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000446818	ENST00000262493		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-3UTR	ENST00000446818	ENST00000262494		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000446818	ENST00000569295		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000429924	ENST00000262493		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-3UTR	ENST00000429924	ENST00000262494		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000429924	ENST00000569295		ChiTaRS3.1			BF362557	TBC1D5	chr3	17780626	-	GNAO1	chr16	56378567	+
intron-intron	ENST00000228827	ENST00000228827		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000543199		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000537466		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000552180		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000228827		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000543199		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000537466		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000552180		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000228827		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000543199		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000537466		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000552180		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000228827		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000543199		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000537466		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000552180		ChiTaRS3.1			AW975187	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-5UTR	ENST00000330978	ENST00000223324		ChiTaRS3.1			BQ437667	BOLA2	chr16	30081223	-	MRPL32	chr7	42971975	+
intron-intron	ENST00000330978	ENST00000496564		ChiTaRS3.1			BQ437667	BOLA2	chr16	30081223	-	MRPL32	chr7	42971975	+
intron-3CDS	ENST00000403058	ENST00000318442		ChiTaRS3.1			BF996277	POU6F2	chr7	39368420	+	ZNF366	chr5	71739730	+
intron-3CDS	ENST00000518318	ENST00000318442		ChiTaRS3.1			BF996277	POU6F2	chr7	39368420	+	ZNF366	chr5	71739730	+
intron-3CDS	ENST00000517348	ENST00000318442		ChiTaRS3.1			BF996277	POU6F2	chr7	39368420	+	ZNF366	chr5	71739730	+
intron-3CDS	ENST00000559001	ENST00000318442		ChiTaRS3.1			BF996277	POU6F2	chr7	39368420	+	ZNF366	chr5	71739730	+
intron-3CDS	ENST00000464276	ENST00000318442		ChiTaRS3.1			BF996277	POU6F2	chr7	39368420	+	ZNF366	chr5	71739730	+
3UTR-3UTR	ENST00000374580	ENST00000176763		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
3UTR-intron	ENST00000374580	ENST00000517775		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
3UTR-3UTR	ENST00000374574	ENST00000176763		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
3UTR-intron	ENST00000374574	ENST00000517775		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
intron-3UTR	ENST00000479069	ENST00000176763		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
intron-intron	ENST00000479069	ENST00000517775		ChiTaRS3.1			CA439717	BMPR2	chr2	203432368	-	STK10	chr5	171471842	-
intron-3CDS	ENST00000500949	ENST00000348225		ChiTaRS3.1			AW379067	OIP5-AS1	chr15	41587819	-	PTN	chr7	136912767	-
intron-3UTR	ENST00000500949	ENST00000393083		ChiTaRS3.1			AW379067	OIP5-AS1	chr15	41587819	-	PTN	chr7	136912767	-
intron-3CDS	ENST00000426540	ENST00000395811		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000426540	ENST00000444976		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000426540	ENST00000395804		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000426540	ENST00000341712		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000426540	ENST00000395806		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000426540	ENST00000395807		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000431636	ENST00000395811		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000431636	ENST00000444976		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000431636	ENST00000395804		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000431636	ENST00000341712		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000431636	ENST00000395806		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000431636	ENST00000395807		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000341840	ENST00000395811		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000341840	ENST00000444976		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000341840	ENST00000395804		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000341840	ENST00000341712		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000341840	ENST00000395806		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000341840	ENST00000395807		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000273320	ENST00000395811		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000273320	ENST00000444976		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000273320	ENST00000395804		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3CDS	ENST00000273320	ENST00000341712		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000273320	ENST00000395806		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-intron	ENST00000273320	ENST00000395807		ChiTaRS3.1			BM994787	ZKSCAN7	chr3	44619572	+	MPRIP	chr17	17080698	+
intron-3UTR	ENST00000393352	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000393352	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000393352	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000336660	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000336660	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000336660	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000607522	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000607522	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000607522	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000409177	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000409177	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000409177	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000344213	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000344213	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000344213	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000393353	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000393353	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000393353	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000322142	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000322142	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000322142	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000358129	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000358129	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000358129	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000409807	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000409807	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000409807	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000408995	ENST00000358252		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-3UTR	ENST00000408995	ENST00000532437		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000408995	ENST00000530920		ChiTaRS3.1			BF844047	FHL2	chr2	106025429	+	TNKS1BP1	chr11	57067473	-
intron-intron	ENST00000551492	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551492	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000346562	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000341321	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000548645	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000356141	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000357798	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000547068	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000551008	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000551492		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000346562		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000341321		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000548645		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000356141		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000357798		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000547068		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000551008		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000550662	ENST00000550662		ChiTaRS3.1			CR738457	NPAS3	chr14	34255886	+	NPAS3	chr14	34256010	-
intron-intron	ENST00000303113	ENST00000402038		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000303113	ENST00000492350		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000453626	ENST00000402038		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000453626	ENST00000492350		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000303071	ENST00000402038		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000303071	ENST00000492350		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000432378	ENST00000402038		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000432378	ENST00000492350		ChiTaRS3.1			DB069377	DONSON	chr21	35284679	-	PARG	chr10	51579193	+
intron-intron	ENST00000374358	ENST00000582337		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000309902		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000577538		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000299687		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000374358	ENST00000584235		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000582337		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000309902		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000577538		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000299687		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
intron-intron	ENST00000480937	ENST00000584235		ChiTaRS3.1			BE077367	TMEM50A	chr1	25666965	-	ZNF407	chr18	72421974	-
3UTR-3CDS	ENST00000331203	ENST00000439576		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000331203	ENST00000558207		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000331203	ENST00000559004		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000331203	ENST00000352105		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000331203	ENST00000561243		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-3CDS	ENST00000409903	ENST00000439576		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000409903	ENST00000558207		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000409903	ENST00000559004		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000409903	ENST00000352105		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
3UTR-intron	ENST00000409903	ENST00000561243		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-3CDS	ENST00000409667	ENST00000439576		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409667	ENST00000558207		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409667	ENST00000559004		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409667	ENST00000352105		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409667	ENST00000561243		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-3CDS	ENST00000409450	ENST00000439576		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409450	ENST00000558207		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409450	ENST00000559004		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409450	ENST00000352105		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000409450	ENST00000561243		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-3CDS	ENST00000472377	ENST00000439576		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000472377	ENST00000558207		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000472377	ENST00000559004		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000472377	ENST00000352105		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000472377	ENST00000561243		ChiTaRS3.1			BF061357	FBLN7	chr2	112945649	-	ACAN	chr15	89401959	-
intron-intron	ENST00000368467	ENST00000374647		ChiTaRS3.1			BC000237	PMVK	chr1	154897216	-	IKBKAP	chr9	111633277	-
intron-intron	ENST00000368467	ENST00000537196		ChiTaRS3.1			BC000237	PMVK	chr1	154897216	-	IKBKAP	chr9	111633277	-
intron-intron	ENST00000368467	ENST00000467959		ChiTaRS3.1			BC000237	PMVK	chr1	154897216	-	IKBKAP	chr9	111633277	-
intron-intron	ENST00000359282	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359282	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000603815	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000437231	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000447282	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000549863	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000359462	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000546463	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552296	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000552819	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000455667	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000439930	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000548933	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375217		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375226		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375267		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375254		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375225		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000429347		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375224		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000543981		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000467272		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000541275	ENST00000375218		ChiTaRS3.1			BE830517	PCBP2	chr12	53869938	-	UBR4	chr1	19409860	+
intron-intron	ENST00000417172	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000417172	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000417172	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000417172	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361388	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361388	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361388	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000422748	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000422748	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000422748	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000361675	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000361675	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000361675	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361901	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361901	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000361901	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000393118	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000393118	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-3UTR	ENST00000393118	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
3UTR-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000495522	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000495522	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000495522	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000424922	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000424922	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000424922	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000543443	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000543443	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000543443	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000417172		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000466704	ENST00000361388		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000422748		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000361675		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000466704	ENST00000361901		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3UTR	ENST00000466704	ENST00000393118		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000495522		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000424922		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000543443		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			BQ366127	CALD1	chr7	134654320	-	CALD1	chr7	134654504	+
intron-3CDS	ENST00000359867	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000359867	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000359867	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000396832	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000396832	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000396832	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000400206	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000400206	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000400206	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000403904	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000403904	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000403904	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000413574	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000413574	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000413574	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000405675	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000405675	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000405675	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000498529	ENST00000357066		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000498529	ENST00000592143		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-intron	ENST00000498529	ENST00000592280		ChiTaRS3.1			BI029107	CSNK1E	chr22	38696922	-	MOB3A	chr19	2077001	-
intron-3CDS	ENST00000359051	ENST00000359051		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000359051	ENST00000336307		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000359051	ENST00000415204		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000359051	ENST00000450982		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000359051	ENST00000513170		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000336307	ENST00000359051		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000336307	ENST00000336307		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000336307	ENST00000415204		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000336307	ENST00000450982		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000336307	ENST00000513170		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000415204	ENST00000359051		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000415204	ENST00000336307		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000415204	ENST00000415204		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000415204	ENST00000450982		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000415204	ENST00000513170		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000450982	ENST00000359051		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000450982	ENST00000336307		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000450982	ENST00000415204		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000450982	ENST00000450982		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000450982	ENST00000513170		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000513170	ENST00000359051		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000513170	ENST00000336307		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000513170	ENST00000415204		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000513170	ENST00000450982		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-intron	ENST00000513170	ENST00000513170		ChiTaRS3.1			BQ441777	HYAL3	chr3	50332530	+	HYAL3	chr3	50332459	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911257	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911257	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911257	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911257	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000519937	ENST00000266397		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000519937	ENST00000540097		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000519937	ENST00000544881		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000342375	ENST00000266397		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000342375	ENST00000540097		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000342375	ENST00000544881		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000393822	ENST00000266397		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000393822	ENST00000540097		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000393822	ENST00000544881		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000409383	ENST00000266397		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000409383	ENST00000540097		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000409383	ENST00000544881		ChiTaRS3.1			BM998827	SFTPB	chr2	85886596	+	ERP27	chr12	15070208	-
intron-3CDS	ENST00000449576	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000449576	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000449576	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396099	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396099	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000425416	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000425416	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000256720	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000256720	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396097	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396097	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000404113	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000404113	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000464517	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000464517	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000449576		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000396099		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000425416		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000256720		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000396097		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000404113		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396098	ENST00000464517		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396098	ENST00000396098		ChiTaRS3.1			BF352637	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
Frame-shit	ENST00000598441	ENST00000598441		ChiTaRS3.1			BQ325997	SNRNP70	chr19	49589736	-	SNRNP70	chr19	49607911	-
Frame-shit	ENST00000598441	ENST00000221448		ChiTaRS3.1			BQ325997	SNRNP70	chr19	49589736	-	SNRNP70	chr19	49607911	-
Frame-shit	ENST00000221448	ENST00000598441		ChiTaRS3.1			BQ325997	SNRNP70	chr19	49589736	-	SNRNP70	chr19	49607911	-
Frame-shit	ENST00000221448	ENST00000221448		ChiTaRS3.1			BQ325997	SNRNP70	chr19	49589736	-	SNRNP70	chr19	49607911	-
3UTR-3UTR	ENST00000304636	ENST00000304636		ChiTaRS3.1			AA570347	COL3A1	chr2	189877123	+	COL3A1	chr2	189877031	-
3UTR-3UTR	ENST00000304636	ENST00000317840		ChiTaRS3.1			AA570347	COL3A1	chr2	189877123	+	COL3A1	chr2	189877031	-
3UTR-3UTR	ENST00000317840	ENST00000304636		ChiTaRS3.1			AA570347	COL3A1	chr2	189877123	+	COL3A1	chr2	189877031	-
3UTR-3UTR	ENST00000317840	ENST00000317840		ChiTaRS3.1			AA570347	COL3A1	chr2	189877123	+	COL3A1	chr2	189877031	-
5CDS-3UTR	ENST00000223273	ENST00000223273		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000448268		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000432096		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000469737		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000448268	ENST00000223273		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000448268		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000432096		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000469737		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000432096	ENST00000223273		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000448268		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000432096		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000469737		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000469737	ENST00000223273		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000448268		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000432096		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000469737		ChiTaRS3.1			AW819977	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000489399	ENST00000304685		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
intron-intron	ENST00000489399	ENST00000536277		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
intron-3UTR	ENST00000489399	ENST00000360851		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
intron-intron	ENST00000489399	ENST00000539189		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000309988	ENST00000304685		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000309988	ENST00000536277		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000309988	ENST00000360851		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000309988	ENST00000539189		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000349807	ENST00000304685		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000349807	ENST00000536277		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000349807	ENST00000360851		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000349807	ENST00000539189		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000354078	ENST00000304685		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000354078	ENST00000536277		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000354078	ENST00000360851		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000354078	ENST00000539189		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000353004	ENST00000304685		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000353004	ENST00000536277		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-3UTR	ENST00000353004	ENST00000360851		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
3UTR-intron	ENST00000353004	ENST00000539189		ChiTaRS3.1			AW950587	MAL	chr2	95719445	-	RGL1	chr1	183896740	+
intron-intron	ENST00000408388	ENST00000390237		ChiTaRS3.1			M30707	PVT1	chr8	128963144	+	IGKC	chr2	89160246	-
intron-3UTR	ENST00000266000	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000266000	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000266000	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000374542	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000374542	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000374542	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414083	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414083	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414083	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000477162	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000477162	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000477162	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000455860	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000455860	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000455860	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000436311	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000436311	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000436311	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000472399	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000472399	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000472399	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399060	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399060	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399060	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383062	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383062	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383062	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000461796	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000461796	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000461796	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000433482	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000433482	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000433482	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000445009	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000445009	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000445009	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000469277	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000469277	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000469277	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399344	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399344	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000399344	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383194	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383194	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000383194	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000494562	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000494562	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000494562	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414388	ENST00000475243		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414388	ENST00000395802		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000414388	ENST00000265619		ChiTaRS3.1			AI093537	DAXX	chr6	4519208	+	VAPB	chr20	57020463	-
intron-3UTR	ENST00000390548	ENST00000390237		ChiTaRS3.1			BE185007	IGHG1	chr2	89247280	+	IGKC	chr2	89156841	+
intron-intron	ENST00000369485	ENST00000373297		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000369485	ENST00000314607		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000369485	ENST00000482131		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000265607	ENST00000373297		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000265607	ENST00000314607		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000265607	ENST00000482131		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000538899	ENST00000373297		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000538899	ENST00000314607		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000538899	ENST00000482131		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000369475	ENST00000373297		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000369475	ENST00000314607		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
intron-intron	ENST00000369475	ENST00000482131		ChiTaRS3.1			AK024577	RNGTT	chr6	89407409	-	ZMYM4	chr1	35769795	+
3UTR-3CDS	ENST00000391857	ENST00000264005		ChiTaRS3.1			X06537	RPL13A	chr19	49995147	-	LCAT	chr16	67977957	-
Frame-shit	ENST00000477613	ENST00000264005		ChiTaRS3.1			X06537	RPL13A	chr19	49995147	-	LCAT	chr16	67977957	-
3UTR-intron	ENST00000319441	ENST00000367661		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
3UTR-intron	ENST00000319441	ENST00000367662		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
3UTR-intron	ENST00000319441	ENST00000486075		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000543666	ENST00000367661		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000543666	ENST00000367662		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000543666	ENST00000486075		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000535860	ENST00000367661		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000535860	ENST00000367662		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
intron-intron	ENST00000535860	ENST00000486075		ChiTaRS3.1			AW195637	PCK1	chr20	56141267	-	PAPPA2	chr1	176802993	-
In-frame	ENST00000320868	ENST00000376670		ChiTaRS3.1			AI064977	HBA1	chr16	227079	-	GATA1	chrX	48651594	+
In-frame	ENST00000320868	ENST00000376665		ChiTaRS3.1			AI064977	HBA1	chr16	227079	-	GATA1	chrX	48651594	+
In-frame	ENST00000397797	ENST00000376670		ChiTaRS3.1			AI064977	HBA1	chr16	227079	-	GATA1	chrX	48651594	+
In-frame	ENST00000397797	ENST00000376665		ChiTaRS3.1			AI064977	HBA1	chr16	227079	-	GATA1	chrX	48651594	+
intron-intron	ENST00000438049	ENST00000438049		ChiTaRS3.1			BG819777	LINC00689	chr7	158820340	-	LINC00689	chr7	158820494	+
intron-3CDS	ENST00000532636	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000532636	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000533540	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000533540	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000453788	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000453788	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000534624	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534624	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000227378	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000227378	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000534319	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000534319	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000526110	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526110	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-3CDS	ENST00000526862	ENST00000532636		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000533540		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000453788		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000534624		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000227378		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000534319		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000526110		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000526862	ENST00000526862		ChiTaRS3.1			BF885577	HSPA8	chr11	122929149	+	HSPA8	chr11	122930588	-
intron-intron	ENST00000249636	ENST00000249636		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000249636	ENST00000545237		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000249636	ENST00000567417		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000545237	ENST00000249636		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000545237	ENST00000545237		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000545237	ENST00000567417		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000567417	ENST00000249636		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000567417	ENST00000545237		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
intron-intron	ENST00000567417	ENST00000567417		ChiTaRS3.1			CR933617	PIAS1	chr15	68398034	+	PIAS1	chr15	68389899	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW407607	MALAT1	chr11	65266597	-	MALAT1	chr11	65269502	-
intron-intron	ENST00000561003	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000561003	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000259003	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000438387	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000346606	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000450719	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000558099	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000309894	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000393799		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000530427		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000393800		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000534534		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000524845		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000265637		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000524904		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000393801		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000265636		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000529710		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000392824	ENST00000527403		ChiTaRS3.1			BF990157	CSHL1	chr17	61986992	-	PPP6R3	chr11	68325617	+
intron-intron	ENST00000255977	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000255977	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000255977	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000255977	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000255977	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000255977	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000437223	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000474576	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000480552	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000443720	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000255977		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000437223		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000474576		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000480552		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000443720		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
intron-intron	ENST00000481705	ENST00000481705		ChiTaRS3.1			BE073317	MKRN1	chr7	140166171	+	MKRN1	chr7	140166005	-
In-frame	ENST00000376214	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376214	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376213	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395882	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000304053	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000376208	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000277120	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000323115	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000359847	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000376214		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000376213		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000395882		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000304053		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000376208		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000277120		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000323115		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000359847		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
In-frame	ENST00000395866	ENST00000395866		ChiTaRS3.1			EB388087	NTRK2	chr9	87342662	-	NTRK2	chr9	87342767	+
intron-3CDS	ENST00000378330	ENST00000378330		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000378330	ENST00000301030		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000378330	ENST00000563291		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000378330	ENST00000567736		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000301030	ENST00000378330		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000301030	ENST00000301030		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000301030	ENST00000563291		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000301030	ENST00000567736		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000563291	ENST00000378330		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000563291	ENST00000301030		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000563291	ENST00000563291		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000563291	ENST00000567736		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000567736	ENST00000378330		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-3CDS	ENST00000567736	ENST00000301030		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000567736	ENST00000563291		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000567736	ENST00000567736		ChiTaRS3.1			BF084757	ANKRD11	chr16	89350746	+	ANKRD11	chr16	89349869	+
intron-intron	ENST00000336273	ENST00000393094		ChiTaRS3.1			BG956537	MTDH	chr8	98668053	-	CUL5	chr11	107881793	+
intron-intron	ENST00000336273	ENST00000531843		ChiTaRS3.1			BG956537	MTDH	chr8	98668053	-	CUL5	chr11	107881793	+
intron-intron	ENST00000519934	ENST00000393094		ChiTaRS3.1			BG956537	MTDH	chr8	98668053	-	CUL5	chr11	107881793	+
intron-intron	ENST00000519934	ENST00000531843		ChiTaRS3.1			BG956537	MTDH	chr8	98668053	-	CUL5	chr11	107881793	+
intron-3UTR	ENST00000384994	ENST00000526301		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000342115		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000528667		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000256578		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000358729		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000528454		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3UTR	ENST00000384994	ENST00000393688		ChiTaRS3.1			BC030217	NEAT1	chr11	65190525	+	AMPD2	chr1	110172058	+
intron-3CDS	ENST00000404233	ENST00000404233		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000529972		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000525859		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000404233	ENST00000543287		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000404233		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000529972		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000525859		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000529972	ENST00000543287		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000404233		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000529972		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000525859		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000525859	ENST00000543287		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000404233		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000529972		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000525859		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-3CDS	ENST00000543287	ENST00000543287		ChiTaRS3.1			AA356687	HYOU1	chr11	118920519	-	HYOU1	chr11	118922827	-
intron-intron	ENST00000378707	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378707	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378707	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378707	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000359836	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000359836	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000359836	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000359836	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000541735	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000541735	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000541735	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000541735	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000343523	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000343523	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000343523	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000343523	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378677	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378677	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378677	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378677	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000357033	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000357033	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000357033	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000357033	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000474231	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000474231	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000474231	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000474231	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378723	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378723	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378723	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378723	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378702	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378702	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378702	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378702	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000361471	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000361471	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000361471	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000361471	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378680	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378680	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378680	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000378680	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000288447	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000288447	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000288447	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000288447	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000445312	ENST00000506198		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000445312	ENST00000381334		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000445312	ENST00000542052		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
intron-intron	ENST00000445312	ENST00000514904		ChiTaRS3.1			BX282127	DMD	chrX	31893460	+	TMEM165	chr4	56284474	+
3UTR-intron	ENST00000462284	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000462284	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000356290	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000356290	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000540827	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000540827	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000258149	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000258149	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000428863	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000428863	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000393412	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
3UTR-intron	ENST00000393412	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000258148	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000258148	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000544561	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000544561	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000393410	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000393410	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000393413	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000393413	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000517852	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000517852	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000545204	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000545204	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000350057	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000350057	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000360430	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000360430	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000299252	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000299252	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000348801	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000348801	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000478070	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000478070	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000544125	ENST00000257700		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000544125	ENST00000477285		ChiTaRS3.1			CR748127	MDM2	chr12	69233841	+	RINT1	chr7	105203315	+
intron-intron	ENST00000393784	ENST00000393784		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000519860	ENST00000393784		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000523291	ENST00000393784		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000326654	ENST00000393784		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			BE084567	ERGIC1	chr5	172305780	+	ERGIC1	chr5	172305677	-
intron-intron	ENST00000393829	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000393829	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000546249	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000546249	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000537728	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000537728	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000264649	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000264649	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000585525	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000585525	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000343619	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000343619	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000544137	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000544137	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000587797	ENST00000262144		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
3UTR-intron	ENST00000587797	ENST00000562331		ChiTaRS3.1			BM674717	ATP6V0A1	chr17	40674538	-	WDR59	chr16	74937472	-
intron-intron	ENST00000225916	ENST00000219151		ChiTaRS3.1			BF932027	KAT2A	chr17	40265561	+	ACSM1	chr16	20688214	-
intron-intron	ENST00000225916	ENST00000307493		ChiTaRS3.1			BF932027	KAT2A	chr17	40265561	+	ACSM1	chr16	20688214	-
intron-intron	ENST00000225916	ENST00000520010		ChiTaRS3.1			BF932027	KAT2A	chr17	40265561	+	ACSM1	chr16	20688214	-
intron-intron	ENST00000230053	ENST00000316999		ChiTaRS3.1			DR002957	B3GAT2	chr6	71666248	+	SMAP1	chr6	71665584	-
intron-intron	ENST00000230053	ENST00000370452		ChiTaRS3.1			DR002957	B3GAT2	chr6	71666248	+	SMAP1	chr6	71665584	-
intron-intron	ENST00000230053	ENST00000370455		ChiTaRS3.1			DR002957	B3GAT2	chr6	71666248	+	SMAP1	chr6	71665584	-
intron-intron	ENST00000230053	ENST00000422334		ChiTaRS3.1			DR002957	B3GAT2	chr6	71666248	+	SMAP1	chr6	71665584	-
intron-intron	ENST00000374706	ENST00000374706		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000265375		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000339497		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000374704		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000492478		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000374706		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000265375		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000339497		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000374704		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000492478		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000374706		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000265375		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000339497		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000374704		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000492478		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000374706		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000265375		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000339497		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000374704		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000492478		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000374706		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000265375		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000339497		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000374704		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000492478		ChiTaRS3.1			BF872107	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-3CDS	ENST00000372727	ENST00000310118		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000372727	ENST00000435761		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000372727	ENST00000439383		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3UTR	ENST00000372727	ENST00000459910		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000414310	ENST00000310118		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000414310	ENST00000435761		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000414310	ENST00000439383		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3UTR	ENST00000414310	ENST00000459910		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
3UTR-3CDS	ENST00000243918	ENST00000310118		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
3UTR-3CDS	ENST00000243918	ENST00000435761		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
3UTR-3CDS	ENST00000243918	ENST00000439383		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
3UTR-3UTR	ENST00000243918	ENST00000459910		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000426004	ENST00000310118		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000426004	ENST00000435761		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000426004	ENST00000439383		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3UTR	ENST00000426004	ENST00000459910		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000479779	ENST00000310118		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000479779	ENST00000435761		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3CDS	ENST00000479779	ENST00000439383		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-3UTR	ENST00000479779	ENST00000459910		ChiTaRS3.1			AI201767	SYS1	chr20	43996535	-	PSMD2	chr3	184019676	-
intron-intron	ENST00000329957	ENST00000262139		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000329957	ENST00000589459		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000329957	ENST00000546360		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000526462	ENST00000262139		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000526462	ENST00000589459		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000526462	ENST00000546360		ChiTaRS3.1			BF946607	MOB2	chr11	1765145	+	WIPI1	chr17	66441826	+
intron-intron	ENST00000370801	ENST00000487861		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370801	ENST00000471583		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370801	ENST00000487270		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370801	ENST00000488612		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370801	ENST00000390683		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370801	ENST00000469165		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000487861		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000471583		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000487270		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000488612		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000390683		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000370798	ENST00000469165		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000487861		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000471583		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000487270		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000488612		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000390683		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000476275	ENST00000469165		ChiTaRS3.1			AA420457	ZZZ3	chr1	78106038	+	RAD51B	chr14	68603002	-
intron-intron	ENST00000418342	ENST00000337018		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000418342	ENST00000452918		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000418342	ENST00000601879		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000418342	ENST00000600377		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000418342	ENST00000456085		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000418342	ENST00000598202		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000337018		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000452918		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000601879		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000600377		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000456085		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000302291	ENST00000598202		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000337018		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000452918		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000601879		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000600377		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000456085		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000314174	ENST00000598202		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000337018		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000452918		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000601879		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000600377		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000456085		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-intron	ENST00000374623	ENST00000598202		ChiTaRS3.1			BE082677	LUZP1	chr1	23431876	-	SUGP2	chr19	19133489	-
intron-3CDS	ENST00000456585	ENST00000368301		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-3CDS	ENST00000456585	ENST00000361308		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-3CDS	ENST00000456585	ENST00000347559		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-3CDS	ENST00000456585	ENST00000368300		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-3CDS	ENST00000456585	ENST00000368299		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000456585	ENST00000448611		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000456585	ENST00000368297		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000456585	ENST00000473598		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000456585	ENST00000392353		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000456585	ENST00000496738		ChiTaRS3.1			AK057997	KIF25-AS1	chr6	168397626	-	LMNA	chr1	156084778	+
intron-intron	ENST00000250894	ENST00000336868		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000250894	ENST00000577098		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000250894	ENST00000575801		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000250894	ENST00000538650		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000250894	ENST00000537628		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000356010	ENST00000336868		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000356010	ENST00000577098		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000356010	ENST00000575801		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000356010	ENST00000538650		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000356010	ENST00000537628		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000568271	ENST00000336868		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000568271	ENST00000577098		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000568271	ENST00000575801		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000568271	ENST00000538650		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-intron	ENST00000568271	ENST00000537628		ChiTaRS3.1			BF376797	MAPK8IP3	chr16	1791428	+	NXN	chr17	784166	-
intron-3CDS	ENST00000318024	ENST00000373627		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000318024	ENST00000373616		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000318024	ENST00000471737		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000318024	ENST00000538808		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000527020	ENST00000373627		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000527020	ENST00000373616		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000527020	ENST00000471737		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000527020	ENST00000538808		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000005226	ENST00000373627		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000005226	ENST00000373616		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000005226	ENST00000471737		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000005226	ENST00000538808		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000527720	ENST00000373627		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000527720	ENST00000373616		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000527720	ENST00000471737		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000527720	ENST00000538808		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000529563	ENST00000373627		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-3CDS	ENST00000529563	ENST00000373616		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000529563	ENST00000471737		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
intron-intron	ENST00000529563	ENST00000538808		ChiTaRS3.1			BF808207	USH1C	chr11	17546048	+	MTCH1	chr6	36945901	+
3UTR-intron	ENST00000425346	ENST00000358344		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000506339		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000355836		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000514633		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000515193		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000506259		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000425346	ENST00000504898		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000358344		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000506339		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000355836		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000514633		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000515193		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000506259		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000424512	ENST00000504898		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000358344		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000506339		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000355836		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000514633		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000515193		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000506259		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000232508	ENST00000504898		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000358344		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000506339		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000355836		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000514633		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000515193		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000506259		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
3UTR-intron	ENST00000418577	ENST00000504898		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000358344		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000506339		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000355836		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000514633		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000515193		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000506259		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
intron-intron	ENST00000419046	ENST00000504898		ChiTaRS3.1			AI738547	CYB561D2	chr3	50391232	-	HNRNPAB	chr5	177634444	-
In-frame	ENST00000378308	ENST00000339399		ChiTaRS3.1			BE254787	USP9X	chrX	41088649	-	ANP32B	chr9	100745638	+
5CDS-intron	ENST00000378308	ENST00000473205		ChiTaRS3.1			BE254787	USP9X	chrX	41088649	-	ANP32B	chr9	100745638	+
In-frame	ENST00000324545	ENST00000339399		ChiTaRS3.1			BE254787	USP9X	chrX	41088649	-	ANP32B	chr9	100745638	+
5CDS-intron	ENST00000324545	ENST00000473205		ChiTaRS3.1			BE254787	USP9X	chrX	41088649	-	ANP32B	chr9	100745638	+
intron-3UTR	ENST00000376874	ENST00000264071		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-3UTR	ENST00000376874	ENST00000540257		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000376874	ENST00000601152		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000376874	ENST00000598006		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000376874	ENST00000596926		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-3UTR	ENST00000340724	ENST00000264071		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-3UTR	ENST00000340724	ENST00000540257		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000340724	ENST00000601152		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000340724	ENST00000598006		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000340724	ENST00000596926		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-3UTR	ENST00000544468	ENST00000264071		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-3UTR	ENST00000544468	ENST00000540257		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000544468	ENST00000601152		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000544468	ENST00000598006		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-intron	ENST00000544468	ENST00000596926		ChiTaRS3.1			BF945627	RILPL1	chr12	123969063	+	TUBB4A	chr19	6494674	-
intron-5UTR	ENST00000335044	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000335044	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000335044	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000335044	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000335044	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000335044	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000335044	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000335044	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000335044	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000265529	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000265529	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000265529	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000265529	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000265529	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000265529	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000265529	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000265529	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000265529	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000444589	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000444589	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000444589	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000444589	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000444589	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000444589	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000444589	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000444589	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000444589	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000452770	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000452770	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000452770	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000452770	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000452770	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000452770	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000452770	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000452770	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000452770	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000352910	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000352910	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000352910	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000352910	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000352910	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000352910	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000352910	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000352910	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000352910	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000487440	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000487440	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000487440	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000487440	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000487440	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000487440	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000487440	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000487440	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000487440	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425853	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425853	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425853	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425853	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425853	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425853	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425853	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425853	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425853	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000432493	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000432493	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000432493	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000432493	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000432493	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000432493	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000432493	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000432493	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000432493	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425452	ENST00000335044		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425452	ENST00000265529		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425452	ENST00000444589		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425452	ENST00000452770		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425452	ENST00000352910		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425452	ENST00000487440		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425452	ENST00000425853		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-5UTR	ENST00000425452	ENST00000432493		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000425452	ENST00000425452		ChiTaRS3.1			BF195017	KIF9	chr3	47316851	+	KIF9	chr3	47324240	-
intron-intron	ENST00000238561	ENST00000357214		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
intron-5UTR	ENST00000238561	ENST00000468598		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
intron-intron	ENST00000341211	ENST00000357214		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
intron-5UTR	ENST00000341211	ENST00000468598		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
intron-intron	ENST00000556560	ENST00000357214		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
intron-5UTR	ENST00000556560	ENST00000468598		ChiTaRS3.1			AW609907	ADCK1	chr14	78346120	-	SFPQ	chr1	35644249	-
Frame-shit	ENST00000248935	ENST00000345044		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5CDS-intron	ENST00000248935	ENST00000403208		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5CDS-intron	ENST00000248935	ENST00000398356		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5CDS-intron	ENST00000248935	ENST00000405847		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5CDS-3UTR	ENST00000248935	ENST00000467660		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5CDS-3UTR	ENST00000248935	ENST00000316185		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-3CDS	ENST00000439996	ENST00000345044		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-intron	ENST00000439996	ENST00000403208		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-intron	ENST00000439996	ENST00000398356		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-intron	ENST00000439996	ENST00000405847		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-3UTR	ENST00000439996	ENST00000467660		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
5UTR-3UTR	ENST00000439996	ENST00000316185		ChiTaRS3.1			CN352897	GSTT1	chr22	24384119	-	SLC2A11	chr22	24217301	+
intron-intron	ENST00000397338	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000397338	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000282512	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000381937	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000511613	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000506945	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000374825		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000496118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000580234		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000374831		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000395289		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000443797		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000395287		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000449085		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000438194		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000466744		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000383108		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000547895		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000549843		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000442863		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000552513		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000442219		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000498329		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000488549		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000425201		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000399529		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000399528		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000550142		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000548837		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000399527		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000549236		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000482105		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000414731		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000449118		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000550598		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000479973		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000546777		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000450320		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000547286		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000552587		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000549126		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000553146		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000448067		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000436979		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-intron	ENST00000514504	ENST00000466208		ChiTaRS3.1			BF366167	NADK2	chr5	36218417	+	BRD2	chr6	4422742	+
intron-3UTR	ENST00000367385	ENST00000348428		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000367385	ENST00000345724		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000538004	ENST00000348428		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000538004	ENST00000345724		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000367383	ENST00000348428		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000367383	ENST00000345724		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000417895	ENST00000348428		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3UTR	ENST00000417895	ENST00000345724		ChiTaRS3.1			BF115201	NEK7	chr1	198175036	+	MALT1	chr18	56415265	-
intron-3CDS	ENST00000380796	ENST00000574481		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-intron	ENST00000380796	ENST00000576408		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-3CDS	ENST00000474879	ENST00000574481		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-intron	ENST00000474879	ENST00000576408		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-3CDS	ENST00000216080	ENST00000574481		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-intron	ENST00000216080	ENST00000576408		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-3CDS	ENST00000505981	ENST00000574481		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-intron	ENST00000505981	ENST00000576408		ChiTaRS3.1			BF063267	LMF2	chr22	50941695	+	CTRL	chr16	67964158	-
intron-3CDS	ENST00000369026	ENST00000440909		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000448921		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000437397		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000355814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000393087		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000393088		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000404814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000449399		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000369026	ENST00000402629		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-intron	ENST00000369026	ENST00000555289		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000440909		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000448921		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000437397		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000355814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000393087		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000393088		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000404814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000449399		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000464132	ENST00000402629		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-intron	ENST00000464132	ENST00000555289		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000440909		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000448921		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000437397		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000355814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000393087		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000393088		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000404814		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000449399		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-3CDS	ENST00000307940	ENST00000402629		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-intron	ENST00000307940	ENST00000555289		ChiTaRS3.1			AA969777	MCL1	chr1	150547317	+	SERPINA1	chr14	94849277	+
intron-intron	ENST00000396153	ENST00000330430		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000371374		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000306764		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000405162		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000330430		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000371374		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000306764		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000405162		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000330430		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000371374		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000306764		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000405162		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000330430		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000371374		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000306764		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000405162		ChiTaRS3.1			CV391207	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000380155	ENST00000225719		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000380155	ENST00000543464		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000380155	ENST00000584051		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000495743	ENST00000225719		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000495743	ENST00000543464		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000495743	ENST00000584051		ChiTaRS3.1			BF378747	SYAP1	chrX	16772996	+	CPD	chr17	28771373	+
intron-intron	ENST00000514925	ENST00000358136		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000514925	ENST00000356315		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000514925	ENST00000496628		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000514925	ENST00000543766		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000514925	ENST00000471923		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000514925	ENST00000543710		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000358136		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000356315		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000496628		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000543766		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000471923		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-intron	ENST00000296600	ENST00000543710		ChiTaRS3.1			BF356547	ZNF474	chr5	121487445	-	VPS13D	chr1	12315517	+
intron-3UTR	ENST00000272438	ENST00000272438		ChiTaRS3.1			BE965617	TEX261	chr2	71214889	-	TEX261	chr2	71215171	+
intron-intron	ENST00000272438	ENST00000466731		ChiTaRS3.1			BE965617	TEX261	chr2	71214889	-	TEX261	chr2	71215171	+
intron-3UTR	ENST00000466731	ENST00000272438		ChiTaRS3.1			BE965617	TEX261	chr2	71214889	-	TEX261	chr2	71215171	+
intron-intron	ENST00000466731	ENST00000466731		ChiTaRS3.1			BE965617	TEX261	chr2	71214889	-	TEX261	chr2	71215171	+
intron-intron	ENST00000549190	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000549190	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395580	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000337898	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000358314	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000395568	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000256678	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000449194	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000552761	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000317560	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000432191	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000549190		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000395580		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000337898		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000358314		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000395568		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000256678		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000449194		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000552761		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000317560		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000432191		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-intron	ENST00000550535	ENST00000550535		ChiTaRS3.1			BE841207	PPHLN1	chr12	42768663	-	PPHLN1	chr12	42792797	-
intron-3UTR	ENST00000295113	ENST00000295113		ChiTaRS3.1			AA746957	FRZB	chr2	183699081	-	FRZB	chr2	183698745	+
3UTR-3CDS	ENST00000450554	ENST00000450554		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
3UTR-3CDS	ENST00000450554	ENST00000308924		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
3UTR-3CDS	ENST00000450554	ENST00000590551		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000308924	ENST00000450554		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000308924	ENST00000308924		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000308924	ENST00000590551		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000590551	ENST00000450554		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000590551	ENST00000308924		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-3CDS	ENST00000590551	ENST00000590551		ChiTaRS3.1			CN409107	U2AF2	chr19	56185889	+	U2AF2	chr19	56173953	+
intron-intron	ENST00000264211	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000264211	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000400422	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000602326	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374935	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374937	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000536266	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374933	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000544689	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000356916	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000374927	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000264211		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000400422		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000602326		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000374935		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000374937		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000536266		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000374933		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000544689		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000356916		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000374927		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000537738	ENST00000537738		ChiTaRS3.1			BG223267	EIF4G3	chr1	21307723	+	EIF4G3	chr1	21295967	+
intron-intron	ENST00000466411	ENST00000384994		ChiTaRS3.1			AW273767	CLDN4	chr7	73246852	-	NEAT1	chr11	65193438	-
3UTR-intron	ENST00000435050	ENST00000384994		ChiTaRS3.1			AW273767	CLDN4	chr7	73246852	-	NEAT1	chr11	65193438	-
3UTR-intron	ENST00000431918	ENST00000384994		ChiTaRS3.1			AW273767	CLDN4	chr7	73246852	-	NEAT1	chr11	65193438	-
3UTR-intron	ENST00000340958	ENST00000384994		ChiTaRS3.1			AW273767	CLDN4	chr7	73246852	-	NEAT1	chr11	65193438	-
intron-intron	ENST00000534307	ENST00000534307		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
intron-intron	ENST00000534307	ENST00000528302		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
intron-intron	ENST00000534307	ENST00000322535		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000528302	ENST00000534307		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000528302	ENST00000528302		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000528302	ENST00000322535		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000322535	ENST00000534307		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000322535	ENST00000528302		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000322535	ENST00000322535		ChiTaRS3.1			BF820297	SF3B2	chr11	65827440	-	SF3B2	chr11	65827344	+
5CDS-intron	ENST00000289371	ENST00000264255		ChiTaRS3.1			BE671617	EIF5B	chr2	99988192	+	TXNDC9	chr2	99954023	+
5CDS-intron	ENST00000289371	ENST00000409434		ChiTaRS3.1			BE671617	EIF5B	chr2	99988192	+	TXNDC9	chr2	99954023	+
5CDS-intron	ENST00000289371	ENST00000434323		ChiTaRS3.1			BE671617	EIF5B	chr2	99988192	+	TXNDC9	chr2	99954023	+
5CDS-intron	ENST00000289371	ENST00000477337		ChiTaRS3.1			BE671617	EIF5B	chr2	99988192	+	TXNDC9	chr2	99954023	+
intron-3CDS	ENST00000461783	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000461783	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000461783	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000461783	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000449545	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000449545	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000367174	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000367174	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456144	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000456144	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000318981	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000318981	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000360366	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000360366	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000529824	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000529824	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000456877	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000456877	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000528391	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000528391	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000399763		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000399766		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-3CDS	ENST00000275246	ENST00000374343		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000275246	ENST00000470035		ChiTaRS3.1			BG028067	TIAM2	chr6	155174321	+	TMEM57	chr1	25824898	+
intron-intron	ENST00000361205	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000361205	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000399848	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000359446	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000587757	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000585931	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000586765	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000590308	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000361205		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000399848		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000359446		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000587757		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000585931		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000586765		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000590308		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000592991	ENST00000592991		ChiTaRS3.1			AV703587	LDLRAD4	chr18	13576732	+	LDLRAD4	chr18	13564037	+
intron-intron	ENST00000267460	ENST00000003302		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000267460	ENST00000260188		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000267460	ENST00000544967		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000267460	ENST00000545540		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000267460	ENST00000537706		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000267460	ENST00000542033		ChiTaRS3.1			CV380517	PELI2	chr14	56711060	+	USP28	chr11	113691091	+
intron-intron	ENST00000398722	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000536736	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000441551	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000300591	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000398705	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000579038	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000441893	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000582408	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000398686	ENST00000219022		ChiTaRS3.1			BI481187	LOXHD1	chr18	44069291	-	OLFM4	chr13	53607554	-
intron-intron	ENST00000228347	ENST00000555181		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000228347	ENST00000554182		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000228347	ENST00000556095		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000228347	ENST00000438650		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000539066	ENST00000555181		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000539066	ENST00000554182		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000539066	ENST00000556095		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000539066	ENST00000438650		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000549195	ENST00000555181		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000549195	ENST00000554182		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000549195	ENST00000556095		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000549195	ENST00000438650		ChiTaRS3.1			D79227	POLR3B	chr12	106786405	-	GSKIP	chr14	96847835	+
intron-intron	ENST00000407008	ENST00000407008		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000407008	ENST00000583517		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000407008	ENST00000582037		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000407008		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000583517		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000583517	ENST00000582037		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000407008		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000583517		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-intron	ENST00000582037	ENST00000582037		ChiTaRS3.1			AW501447	NLK	chr17	26469570	-	NLK	chr17	26469039	+
intron-3CDS	ENST00000360652	ENST00000374316		ChiTaRS3.1			BI003247	PCED1A	chr20	2817066	-	ITPR3	chr6	33657104	-
intron-3CDS	ENST00000360652	ENST00000605930		ChiTaRS3.1			BI003247	PCED1A	chr20	2817066	-	ITPR3	chr6	33657104	-
intron-3CDS	ENST00000356872	ENST00000374316		ChiTaRS3.1			BI003247	PCED1A	chr20	2817066	-	ITPR3	chr6	33657104	-
intron-3CDS	ENST00000356872	ENST00000605930		ChiTaRS3.1			BI003247	PCED1A	chr20	2817066	-	ITPR3	chr6	33657104	-
intron-3UTR	ENST00000262097	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000262097	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000262097	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000262097	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000262097	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000262097	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000381733	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000381733	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000381733	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000381733	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000381733	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000381733	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000417108	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000417108	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000417108	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000417108	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000417108	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000417108	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520781	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520781	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520781	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520781	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000520781	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000520781	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000314146	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000314146	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000314146	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000314146	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000314146	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000314146	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520051	ENST00000262097		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520051	ENST00000381733		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520051	ENST00000417108		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-3UTR	ENST00000520051	ENST00000520781		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000520051	ENST00000314146		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
intron-intron	ENST00000520051	ENST00000520051		ChiTaRS3.1			BU690017	ASAH1	chr8	17914320	+	ASAH1	chr8	17914440	-
5CDS-3UTR	ENST00000462284	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000356290	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000540827	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
5CDS-3UTR	ENST00000258149	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000428863	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000393412	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
5CDS-3UTR	ENST00000258148	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000544561	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000393410	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000393413	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000517852	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000545204	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
5CDS-3UTR	ENST00000350057	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000360430	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000299252	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000348801	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000478070	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
intron-3UTR	ENST00000544125	ENST00000473414		ChiTaRS3.1			BQ223057	MDM2	chr12	69222637	+	COMMD2	chr3	149458898	-
5CDS-intron	ENST00000297423	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000297423	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000518074	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000541342	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
3UTR-intron	ENST00000521214	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000517693	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000421834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000370769		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000312431		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000370754		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000370788		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000361203		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000244364		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000446842		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000340834		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000370765		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
intron-intron	ENST00000518060	ENST00000518935		ChiTaRS3.1			BF359267	SPIDR	chr8	48511714	-	DST	chr6	56341340	-
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
intron-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
intron-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
intron-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
intron-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			S77889	KMT2A	chr11	118355690	+	ELL	chr19	18586745	-
intron-intron	ENST00000358465	ENST00000263955		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000358465	ENST00000409228		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000369543	ENST00000263955		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000369543	ENST00000409228		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000450349	ENST00000263955		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000450349	ENST00000409228		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000476908	ENST00000263955		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000476908	ENST00000409228		ChiTaRS3.1			AW968667	TRIM33	chr1	114954917	-	STK17B	chr2	197014808	-
intron-intron	ENST00000263816	ENST00000328252		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000534838		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000483254		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000328252		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000534838		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000483254		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000328252		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000534838		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000483254		ChiTaRS3.1			BF992267	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263549	ENST00000233146		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000263549	ENST00000543555		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000263549	ENST00000406134		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000263549	ENST00000461394		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000470515	ENST00000233146		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000470515	ENST00000543555		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000470515	ENST00000406134		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-intron	ENST00000470515	ENST00000461394		ChiTaRS3.1			BI014517	PARP12	chr7	139727142	-	MSH2	chr2	47893893	+
intron-3CDS	ENST00000374040	ENST00000374040		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000374040	ENST00000493901		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000374040	ENST00000357582		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000493901	ENST00000374040		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000493901	ENST00000493901		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000493901	ENST00000357582		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000357582	ENST00000374040		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000357582	ENST00000493901		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
intron-3CDS	ENST00000357582	ENST00000357582		ChiTaRS3.1			W28297	MAP3K6	chr1	27689943	+	MAP3K6	chr1	27689453	-
3UTR-3UTR	ENST00000507110	ENST00000507110		ChiTaRS3.1			D11777	MRPS30	chr5	44815361	-	MRPS30	chr5	44815455	+
3UTR-3UTR	ENST00000507110	ENST00000230914		ChiTaRS3.1			D11777	MRPS30	chr5	44815361	-	MRPS30	chr5	44815455	+
3UTR-3UTR	ENST00000230914	ENST00000507110		ChiTaRS3.1			D11777	MRPS30	chr5	44815361	-	MRPS30	chr5	44815455	+
3UTR-3UTR	ENST00000230914	ENST00000230914		ChiTaRS3.1			D11777	MRPS30	chr5	44815361	-	MRPS30	chr5	44815455	+
Frame-shit	ENST00000426820	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000426820	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
intron-3CDS	ENST00000369559	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
intron-3UTR	ENST00000369559	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369554	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369554	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000369558	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369558	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000369561	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369561	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369555	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369555	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000340480	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000340480	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369553	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369553	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000406344	ENST00000246337		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000406344	ENST00000494399		ChiTaRS3.1			BE772547	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
3UTR-intron	ENST00000378670	ENST00000376131		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
3UTR-intron	ENST00000378670	ENST00000376143		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
3UTR-intron	ENST00000378670	ENST00000468052		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378667	ENST00000376131		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378667	ENST00000376143		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378667	ENST00000468052		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
3UTR-intron	ENST00000496429	ENST00000376131		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
3UTR-intron	ENST00000496429	ENST00000376143		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
3UTR-intron	ENST00000496429	ENST00000468052		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378665	ENST00000376131		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378665	ENST00000376143		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
5CDS-intron	ENST00000378665	ENST00000468052		ChiTaRS3.1			AV742377	UQCRQ	chr5	132203379	+	FGF14	chr13	103018966	+
intron-3UTR	ENST00000570371	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000570371	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000574744	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000574744	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000575882	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000575882	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000445275	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000445275	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000348161	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000348161	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000572405	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000572405	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000572158	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000572158	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000540336	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000540336	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000536554	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000536554	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000575333	ENST00000239243		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-intron	ENST00000575333	ENST00000507785		ChiTaRS3.1			BU963567	TOM1L1	chr17	53036454	-	MSX2	chr5	174157763	+
intron-3UTR	ENST00000409359	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409359	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409359	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409359	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409359	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409359	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-3UTR	ENST00000326016	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000326016	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000326016	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000326016	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000326016	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000326016	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-3UTR	ENST00000392953	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000392953	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000392953	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000392953	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000392953	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000392953	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-3UTR	ENST00000428230	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000428230	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000428230	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000428230	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000428230	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000428230	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-3UTR	ENST00000525839	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000525839	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000525839	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000525839	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000525839	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
3UTR-intron	ENST00000525839	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-3UTR	ENST00000409303	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409303	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409303	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409303	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409303	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000409303	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-3UTR	ENST00000355771	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000355771	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000355771	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000355771	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000355771	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000355771	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-3UTR	ENST00000439368	ENST00000415912		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000439368	ENST00000357071		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000439368	ENST00000374893		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000439368	ENST00000436918		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000439368	ENST00000264205		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-intron	ENST00000439368	ENST00000528294		ChiTaRS3.1			BF964057	ARHGEF4	chr2	131804123	+	ECE1	chr1	21543921	+
intron-3UTR	ENST00000532226	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532226	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532226	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532226	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532226	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532226	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000525151	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000525151	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000525151	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000525151	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000525151	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000438298	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000438298	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000438298	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000438298	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000438298	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000442928	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000442928	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000442928	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000442928	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000442928	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000532353	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532353	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532353	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532353	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000532353	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000420651	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000420651	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000420651	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000420651	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000420651	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000449449	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000449449	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000449449	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000449449	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000449449	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000456352	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000456352	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000456352	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000456352	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000456352	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440001	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440001	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440001	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440001	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440001	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000440395	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440395	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440395	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440395	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000440395	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000606892	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000606892	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000606892	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000606892	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000606892	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000340208		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000424173		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000504921		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000514028		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000437473		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000510942		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3UTR	ENST00000607066	ENST00000506554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000607066	ENST00000508569		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000607066	ENST00000514015		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000607066	ENST00000539796		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-intron	ENST00000607066	ENST00000503554		ChiTaRS3.1			T06577	TRAF3IP2-AS1	chr6	111834052	-	MEF2C	chr5	88016825	-
intron-3CDS	ENST00000372189	ENST00000372189		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372189	ENST00000372195		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372189	ENST00000372190		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-intron	ENST00000372189	ENST00000481260		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372195	ENST00000372189		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372195	ENST00000372195		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372195	ENST00000372190		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-intron	ENST00000372195	ENST00000481260		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372190	ENST00000372189		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372190	ENST00000372195		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000372190	ENST00000372190		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-intron	ENST00000372190	ENST00000481260		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000481260	ENST00000372189		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000481260	ENST00000372195		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-3CDS	ENST00000481260	ENST00000372190		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-intron	ENST00000481260	ENST00000481260		ChiTaRS3.1			CB956427	RAPGEF1	chr9	134454449	-	RAPGEF1	chr9	134458029	-
intron-intron	ENST00000544440	ENST00000359282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000603815		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000437231		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000447282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000549863		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000359462		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000546463		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000552296		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000552819		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000455667		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000439930		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000548933		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000544440	ENST00000541275		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000359282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000603815		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000437231		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000447282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000549863		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000359462		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000546463		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000552296		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000552819		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000455667		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000439930		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000548933		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000407578	ENST00000541275		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000359282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000603815		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000437231		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000447282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000549863		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000359462		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000546463		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000552296		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000552819		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000455667		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000439930		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000548933		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000357337	ENST00000541275		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000359282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000603815		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000437231		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000447282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000549863		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000359462		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000546463		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000552296		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000552819		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000455667		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000439930		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000548933		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000360084	ENST00000541275		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000359282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000603815		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000437231		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000447282		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000549863		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000359462		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000546463		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000552296		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000552819		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000455667		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000439930		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000548933		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
intron-intron	ENST00000482517	ENST00000541275		ChiTaRS3.1			T05177	MYCBP2	chr13	77779507	-	PCBP2	chr12	53856264	+
3UTR-3CDS	ENST00000367816	ENST00000367816		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367816	ENST00000367815		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367816	ENST00000499679		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367816	ENST00000367813		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367815	ENST00000367816		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367815	ENST00000367815		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367815	ENST00000499679		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367815	ENST00000367813		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000499679	ENST00000367816		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000499679	ENST00000367815		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000499679	ENST00000499679		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000499679	ENST00000367813		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367813	ENST00000367816		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367813	ENST00000367815		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367813	ENST00000499679		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
3UTR-3CDS	ENST00000367813	ENST00000367813		ChiTaRS3.1			BM979817	ATP1B1	chr1	169100809	-	ATP1B1	chr1	169096537	+
intron-intron	ENST00000299441	ENST00000252996		ChiTaRS3.1			AI638637	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000299441	ENST00000609045		ChiTaRS3.1			AI638637	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-3UTR	ENST00000360284	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000360284	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000360284	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000360284	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000360284	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000360284	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000360284	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000360284	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000545748	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000545748	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000545748	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000550082	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000550082	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000550082	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000547206	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000547206	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000547206	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000243050	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000243050	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000243050	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000394825	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394825	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000394825	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000394824	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-3UTR	ENST00000394824	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
3UTR-intron	ENST00000394824	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000360284		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000545748		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000550082		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000548232	ENST00000547206		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000243050		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000394825		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3UTR	ENST00000548232	ENST00000394824		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-intron	ENST00000548232	ENST00000548232		ChiTaRS3.1			AA557827	NR4A1	chr12	52453057	+	NR4A1	chr12	52452775	-
intron-3CDS	ENST00000314167	ENST00000354532		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3CDS	ENST00000314167	ENST00000599846		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000314167	ENST00000596957		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000314167	ENST00000347545		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000314167	ENST00000378152		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000314167	ENST00000337665		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3CDS	ENST00000511163	ENST00000354532		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3CDS	ENST00000511163	ENST00000599846		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000511163	ENST00000596957		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000511163	ENST00000347545		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000511163	ENST00000378152		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000511163	ENST00000337665		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3CDS	ENST00000509566	ENST00000354532		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3CDS	ENST00000509566	ENST00000599846		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000509566	ENST00000596957		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000509566	ENST00000347545		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000509566	ENST00000378152		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-intron	ENST00000509566	ENST00000337665		ChiTaRS3.1			BF896167	GAK	chr4	873676	+	ARHGEF1	chr19	42408448	-
intron-3UTR	ENST00000389484	ENST00000309964		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000389484	ENST00000381322		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000389484	ENST00000513440		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000389484	ENST00000506923		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-3UTR	ENST00000486364	ENST00000309964		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000486364	ENST00000381322		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000486364	ENST00000513440		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
intron-intron	ENST00000486364	ENST00000506923		ChiTaRS3.1			BE173637	LRP1B	chr2	142735171	+	CLOCK	chr4	56296614	-
3UTR-3UTR	ENST00000322310	ENST00000322310		ChiTaRS3.1			BG222117	SSNA1	chr9	140084626	-	SSNA1	chr9	140084738	+
3UTR-3UTR	ENST00000322310	ENST00000459860		ChiTaRS3.1			BG222117	SSNA1	chr9	140084626	-	SSNA1	chr9	140084738	+
3UTR-3UTR	ENST00000459860	ENST00000322310		ChiTaRS3.1			BG222117	SSNA1	chr9	140084626	-	SSNA1	chr9	140084738	+
3UTR-3UTR	ENST00000459860	ENST00000459860		ChiTaRS3.1			BG222117	SSNA1	chr9	140084626	-	SSNA1	chr9	140084738	+
intron-intron	ENST00000360184	ENST00000534111		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000360184	ENST00000522307		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000360184	ENST00000523251		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000360184	ENST00000437212		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000360184	ENST00000522824		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000360184	ENST00000518413		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000534111		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000522307		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000523251		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000437212		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000522824		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000556791	ENST00000518413		ChiTaRS3.1			BF766787	DYNC1H1	chr14	102460347	+	TMPRSS4	chr11	117966364	-
intron-intron	ENST00000287263	ENST00000370982		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000287263	ENST00000494936		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000330843	ENST00000370982		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000330843	ENST00000494936		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000522727	ENST00000370982		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000522727	ENST00000494936		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000523182	ENST00000370982		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000523182	ENST00000494936		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000524118	ENST00000370982		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000524118	ENST00000494936		ChiTaRS3.1			BQ344687	RAB11FIP1	chr8	37718698	+	GNG12	chr1	68614309	-
intron-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050802	KMT2A	chr11	118355579	+	AFF1	chr4	87995374	+
intron-intron	ENST00000465508	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000465508	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000465508	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000465508	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000465508	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000465508	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000349363	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377577	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000294401	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000542246	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000515064		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000441778		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000304523		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000502640		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000503178		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-intron	ENST00000377573	ENST00000503829		ChiTaRS3.1			AW935247	DNAJC11	chr1	6713367	-	LDB2	chr4	16785305	-
intron-3UTR	ENST00000225823	ENST00000396373		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
intron-intron	ENST00000225823	ENST00000544715		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
intron-3UTR	ENST00000359872	ENST00000396373		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
intron-intron	ENST00000359872	ENST00000544715		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
intron-3UTR	ENST00000448983	ENST00000396373		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
intron-intron	ENST00000448983	ENST00000544715		ChiTaRS3.1			BM728587	ASIC2	chr17	32337742	-	ETV6	chr12	12046788	+
3UTR-3UTR	ENST00000415816	ENST00000321521		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-3UTR	ENST00000415816	ENST00000358359		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-intron	ENST00000415816	ENST00000513500		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-3UTR	ENST00000415816	ENST00000414217		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-3UTR	ENST00000438323	ENST00000321521		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-3UTR	ENST00000438323	ENST00000358359		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-intron	ENST00000438323	ENST00000513500		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
3UTR-3UTR	ENST00000438323	ENST00000414217		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
intron-3UTR	ENST00000536969	ENST00000321521		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
intron-3UTR	ENST00000536969	ENST00000358359		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
intron-intron	ENST00000536969	ENST00000513500		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
intron-3UTR	ENST00000536969	ENST00000414217		ChiTaRS3.1			AW976767	IFI35	chr17	41166332	-	PPIP5K2	chr5	102538772	-
intron-intron	ENST00000398016	ENST00000430069		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000398016	ENST00000457928		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000359742	ENST00000430069		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000359742	ENST00000457928		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000286445	ENST00000430069		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000286445	ENST00000457928		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000542021	ENST00000430069		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-intron	ENST00000542021	ENST00000457928		ChiTaRS3.1			BQ447327	GRIP1	chr12	67131135	+	TBL1XR1	chr3	176817152	+
intron-3CDS	ENST00000330978	ENST00000366684		ChiTaRS3.1			CF552597	BOLA2	chr16	30080868	+	ACTA1	chr1	229567339	-
intron-3CDS	ENST00000330978	ENST00000366683		ChiTaRS3.1			CF552597	BOLA2	chr16	30080868	+	ACTA1	chr1	229567339	-
intron-5UTR	ENST00000371828	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371828	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371828	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371828	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371828	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371828	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371828	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371802	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371802	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371802	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371802	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371802	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371802	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371802	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-5UTR	ENST00000371856	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-intron	ENST00000371856	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-5UTR	ENST00000371856	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-intron	ENST00000371856	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-5UTR	ENST00000371856	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-intron	ENST00000371856	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
5CDS-5UTR	ENST00000371856	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000347458	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000347458	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000347458	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000347458	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000347458	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000347458	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000347458	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000340954	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000340954	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000340954	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000340954	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000340954	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000340954	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000340954	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371792	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371792	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371792	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371792	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371792	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000371792	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000371792	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000360426	ENST00000371828		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000360426	ENST00000371802		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000360426	ENST00000371856		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000360426	ENST00000347458		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000360426	ENST00000340954		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-intron	ENST00000360426	ENST00000371792		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
intron-5UTR	ENST00000360426	ENST00000360426		ChiTaRS3.1			AU185087	STAU1	chr20	47782534	-	STAU1	chr20	47790809	-
3UTR-3UTR	ENST00000273590	ENST00000273590		ChiTaRS3.1			BE693237	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
3UTR-intron	ENST00000273590	ENST00000493381		ChiTaRS3.1			BE693237	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-3UTR	ENST00000493381	ENST00000273590		ChiTaRS3.1			BE693237	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-intron	ENST00000493381	ENST00000493381		ChiTaRS3.1			BE693237	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-intron	ENST00000275036	ENST00000452400		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000275036	ENST00000267974		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000275036	ENST00000524223		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000344726	ENST00000452400		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000344726	ENST00000267974		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000344726	ENST00000524223		ChiTaRS3.1			BG222207	HMGN3	chr6	79923102	-	NCOA2	chr8	71294977	-
intron-intron	ENST00000490746	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000490746	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000490746	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000490746	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000393913	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000393913	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000393913	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000393913	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000233712	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000233712	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000233712	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000233712	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410113	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410113	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410113	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410113	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410071	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410071	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410071	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410071	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410010	ENST00000358602		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410010	ENST00000509867		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410010	ENST00000330838		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-intron	ENST00000410010	ENST00000514252		ChiTaRS3.1			AF177337	EVA1A	chr2	75719618	-	ANKRD17	chr4	73999126	-
intron-3CDS	ENST00000527353	ENST00000371222		ChiTaRS3.1			BM888517	PIGY	chr4	89444895	+	JUN	chr1	59248477	-
intron-3CDS	ENST00000563679	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000563679	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000563679	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000563679	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000563679	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000563679	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000563679	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000563679	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000325823	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000325823	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000325823	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000325823	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000325823	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000325823	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000325823	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000325823	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000447912	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000447912	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000447912	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000447912	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000447912	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000447912	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000447912	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000447912	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000535621	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000535621	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000535621	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000535621	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000535621	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000535621	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000535621	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000535621	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000455313	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000455313	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000455313	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000455313	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000455313	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000455313	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000455313	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000455313	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000396410	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000396410	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000396410	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000396410	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000396410	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000396410	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000396410	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000396410	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000569715	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000569715	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000569715	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-3CDS	ENST00000569715	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000569715	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000569715	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000569715	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
3UTR-intron	ENST00000569715	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000450288	ENST00000563679		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000450288	ENST00000325823		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000450288	ENST00000447912		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-3CDS	ENST00000450288	ENST00000535621		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000450288	ENST00000455313		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000450288	ENST00000396410		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000450288	ENST00000569715		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000450288	ENST00000450288		ChiTaRS3.1			BI021257	PDXDC1	chr16	15131110	+	PDXDC1	chr16	15123807	+
intron-intron	ENST00000343289	ENST00000343289		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000343289	ENST00000404739		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000343289	ENST00000369857		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000343289	ENST00000423468		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000343289	ENST00000470299		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000404739	ENST00000343289		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000404739	ENST00000404739		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000404739	ENST00000369857		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000404739	ENST00000423468		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000404739	ENST00000470299		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000369857	ENST00000343289		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000369857	ENST00000404739		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000369857	ENST00000369857		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000369857	ENST00000423468		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000369857	ENST00000470299		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000423468	ENST00000343289		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000423468	ENST00000404739		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000423468	ENST00000369857		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000423468	ENST00000423468		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000423468	ENST00000470299		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000470299	ENST00000343289		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000470299	ENST00000404739		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000470299	ENST00000369857		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000470299	ENST00000423468		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000470299	ENST00000470299		ChiTaRS3.1			BE936897	NT5C2	chr10	104879603	+	NT5C2	chr10	104878404	+
intron-intron	ENST00000561743	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000561743	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-3UTR	ENST00000219281	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000539737	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000423271	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000565662	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000536939		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000456907		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000563149	ENST00000377793		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000539656		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000542163		ChiTaRS3.1			BE856987	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000556508	ENST00000264833		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000556508	ENST00000590841		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000453495	ENST00000264833		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000453495	ENST00000590841		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000414716	ENST00000264833		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000414716	ENST00000590841		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000418279	ENST00000264833		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000418279	ENST00000590841		ChiTaRS3.1			AM930524	CEP170B	chr14	105428282	+	OLFM2	chr19	10018095	+
intron-intron	ENST00000378004	ENST00000313056		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000378004	ENST00000329197		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000378004	ENST00000578287		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000274498	ENST00000313056		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000274498	ENST00000329197		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000274498	ENST00000578287		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000486650	ENST00000313056		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000486650	ENST00000329197		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000486650	ENST00000578287		ChiTaRS3.1			BI045497	ARHGAP26	chr5	142228861	-	OGFOD3	chr17	80352348	-
intron-intron	ENST00000375664	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375664	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375664	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375664	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375664	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375664	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000375646	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000347934	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000354911	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000428935	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000375664		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000375646		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000347934		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000354911		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000428935		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000532233	ENST00000532233		ChiTaRS3.1			BY799607	WAC	chr10	28874622	+	WAC	chr10	28873451	+
intron-intron	ENST00000319550	ENST00000262144		ChiTaRS3.1			BF335827	NT5DC1	chr6	116488917	-	WDR59	chr16	74991963	+
intron-intron	ENST00000319550	ENST00000562331		ChiTaRS3.1			BF335827	NT5DC1	chr6	116488917	-	WDR59	chr16	74991963	+
intron-3CDS	ENST00000251900	ENST00000251900		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000251900	ENST00000491988		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000251900	ENST00000398048		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-3CDS	ENST00000491988	ENST00000251900		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000491988	ENST00000491988		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000491988	ENST00000398048		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-3CDS	ENST00000398048	ENST00000251900		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000398048	ENST00000491988		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000398048	ENST00000398048		ChiTaRS3.1			AL833937	SCML2	chrX	18275025	+	SCML2	chrX	18264875	-
intron-intron	ENST00000431232	ENST00000354171		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000431232	ENST00000589115		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000250930	ENST00000354171		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000250930	ENST00000589115		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000476735	ENST00000354171		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000476735	ENST00000589115		ChiTaRS3.1			BI055467	TMEM8A	chr16	421729	-	GPX4	chr19	1104923	-
intron-intron	ENST00000377990	ENST00000309955		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000443227		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000341222		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000340870		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000355558		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000341582		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000342795		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000395148		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000423241		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000490965		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000440180		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000457277		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000494258		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000377990	ENST00000479953		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000309955		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000443227		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000341222		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000340870		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000355558		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000341582		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000342795		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000395148		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000423241		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000490965		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000440180		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000457277		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000494258		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000546106	ENST00000479953		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000309955		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000443227		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000341222		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000340870		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000355558		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000341582		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000342795		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000395148		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000423241		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000490965		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000440180		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000457277		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000494258		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000537589	ENST00000479953		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000309955		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000443227		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000341222		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000340870		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000355558		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000341582		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000342795		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000395148		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000423241		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000490965		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000440180		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000457277		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000494258		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000260569	ENST00000479953		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000309955		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000443227		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000341222		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000340870		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000355558		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000341582		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000342795		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000395148		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000423241		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000490965		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000440180		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000457277		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000494258		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
intron-intron	ENST00000497039	ENST00000479953		ChiTaRS3.1			AI289177	CEP68	chr2	65301415	-	CFLAR	chr2	202000830	-
3UTR-3UTR	ENST00000558401	ENST00000558401		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-intron	ENST00000558401	ENST00000559916		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-intron	ENST00000558401	ENST00000544417		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-3UTR	ENST00000558401	ENST00000559220		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-3UTR	ENST00000559916	ENST00000558401		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-intron	ENST00000559916	ENST00000559916		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-intron	ENST00000559916	ENST00000544417		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-3UTR	ENST00000559916	ENST00000559220		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-3UTR	ENST00000544417	ENST00000558401		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-intron	ENST00000544417	ENST00000559916		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-intron	ENST00000544417	ENST00000544417		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
intron-3UTR	ENST00000544417	ENST00000559220		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-3UTR	ENST00000559220	ENST00000558401		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-intron	ENST00000559220	ENST00000559916		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-intron	ENST00000559220	ENST00000544417		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
3UTR-3UTR	ENST00000559220	ENST00000559220		ChiTaRS3.1			BG759197	B2M	chr15	45009820	-	B2M	chr15	45009837	+
Frame-shit	ENST00000377777	ENST00000368615		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000392638		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000344079		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000356571		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000368614		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000368613		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000368612		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000368610		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000377777	ENST00000432555		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
5CDS-intron	ENST00000377777	ENST00000475747		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000368615		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000392638		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000344079		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000356571		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000368614		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000368613		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000368612		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000368610		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
Frame-shit	ENST00000289316	ENST00000432555		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
5CDS-intron	ENST00000289316	ENST00000475747		ChiTaRS3.1			DA788717	HIST1H2BD	chr6	26158592	+	LRRC27	chr10	134158049	+
intron-5UTR	ENST00000485752	ENST00000485752		ChiTaRS3.1			H82867	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-intron	ENST00000485752	ENST00000295317		ChiTaRS3.1			H82867	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-5UTR	ENST00000295317	ENST00000485752		ChiTaRS3.1			H82867	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-intron	ENST00000295317	ENST00000295317		ChiTaRS3.1			H82867	RNF149	chr2	101890291	+	RNF149	chr2	101888102	+
intron-intron	ENST00000310998	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000310998	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000310998	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000310998	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000310998	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000310998	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000535842	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000535842	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000535842	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000535842	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000535842	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000535842	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375921	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375921	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375921	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375921	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375921	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375921	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375938	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375938	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375938	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375938	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375938	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375938	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375934	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375934	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375934	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375934	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375934	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375934	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375922	ENST00000471014		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375922	ENST00000405570		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375922	ENST00000396183		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375922	ENST00000349496		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000375922	ENST00000453024		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-3UTR	ENST00000375922	ENST00000396185		ChiTaRS3.1			DB360697	TTLL9	chr20	30469688	+	CTNNB1	chr3	41281414	-
intron-intron	ENST00000543760	ENST00000543760		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000543760	ENST00000366672		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000543760	ENST00000541865		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000543760	ENST00000485438		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000366672	ENST00000543760		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000366672	ENST00000366672		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000366672	ENST00000541865		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000366672	ENST00000485438		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000541865	ENST00000543760		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000541865	ENST00000366672		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000541865	ENST00000541865		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000541865	ENST00000485438		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000485438	ENST00000543760		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000485438	ENST00000366672		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000485438	ENST00000541865		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000485438	ENST00000485438		ChiTaRS3.1			AW992137	GALNT2	chr1	230272431	-	GALNT2	chr1	230306050	-
intron-intron	ENST00000370638	ENST00000373382		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000263559		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000395098		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000546041		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000490696		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000541711		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
intron-intron	ENST00000370638	ENST00000489794		ChiTaRS3.1			AI378347	SPATA1	chr1	84977412	+	VPS26A	chr10	70920847	-
In-frame	ENST00000290776	ENST00000290776		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000290776	ENST00000537605		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000290776	ENST00000535318		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000290776	ENST00000565874		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
5CDS-3UTR	ENST00000290776	ENST00000565951		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000537605	ENST00000290776		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000537605	ENST00000537605		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000537605	ENST00000535318		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000537605	ENST00000565874		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
5CDS-3UTR	ENST00000537605	ENST00000565951		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000535318	ENST00000290776		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000535318	ENST00000537605		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000535318	ENST00000535318		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000535318	ENST00000565874		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
5CDS-3UTR	ENST00000535318	ENST00000565951		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000565874	ENST00000290776		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000565874	ENST00000537605		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000565874	ENST00000535318		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
In-frame	ENST00000565874	ENST00000565874		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
5CDS-3UTR	ENST00000565874	ENST00000565951		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-3CDS	ENST00000565951	ENST00000290776		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-3CDS	ENST00000565951	ENST00000537605		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-3CDS	ENST00000565951	ENST00000535318		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-3CDS	ENST00000565951	ENST00000565874		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-3UTR	ENST00000565951	ENST00000565951		ChiTaRS3.1			AW896677	CPNE2	chr16	57155624	+	CPNE2	chr16	57159822	-
intron-intron	ENST00000514747	ENST00000514747		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000514747	ENST00000329540		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000514747	ENST00000443375		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-5UTR	ENST00000514747	ENST00000508298		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000329540	ENST00000514747		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000329540	ENST00000329540		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000329540	ENST00000443375		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-5UTR	ENST00000329540	ENST00000508298		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000443375	ENST00000514747		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000443375	ENST00000329540		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000443375	ENST00000443375		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-5UTR	ENST00000443375	ENST00000508298		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000508298	ENST00000514747		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000508298	ENST00000329540		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-intron	ENST00000508298	ENST00000443375		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
intron-5UTR	ENST00000508298	ENST00000508298		ChiTaRS3.1			BI045467	FAM193B	chr5	176980270	+	FAM193B	chr5	176974228	-
Frame-shit	ENST00000357395	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000357395	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000357395	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000357395	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000358025	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000358025	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000358025	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000358025	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000344113	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000344113	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000344113	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000344113	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000341472	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000341472	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000341472	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000341472	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000356081	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000356081	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000356081	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000356081	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000554584	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000554584	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000554584	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000554584	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000555002	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000555002	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000555002	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000555002	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000394768	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000394768	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
Frame-shit	ENST00000394768	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5CDS-intron	ENST00000394768	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000556725	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000556725	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000556725	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000556725	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000553455	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000553455	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000553455	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000553455	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-3CDS	ENST00000555022	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-3CDS	ENST00000555022	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-3CDS	ENST00000555022	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
5UTR-intron	ENST00000555022	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000554805	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000554805	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000554805	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000554805	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000458046	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000458046	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000458046	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000458046	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000441438	ENST00000357395		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000441438	ENST00000358025		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-3CDS	ENST00000441438	ENST00000344113		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000341472		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000356081		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000554584		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000555002		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000394768		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000556725		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000553455		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000555022		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000554805		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000458046		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000441438	ENST00000441438		ChiTaRS3.1			BE930507	SYNE2	chr14	64675562	-	SYNE2	chr14	64653262	+
intron-intron	ENST00000299314	ENST00000334344		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000299314	ENST00000422737		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000299314	ENST00000479608		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000299314	ENST00000444670		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000299314	ENST00000457135		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549940	ENST00000334344		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549940	ENST00000422737		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549940	ENST00000479608		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549940	ENST00000444670		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549940	ENST00000457135		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000392919	ENST00000334344		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000392919	ENST00000422737		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000392919	ENST00000479608		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000392919	ENST00000444670		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000392919	ENST00000457135		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549165	ENST00000334344		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549165	ENST00000422737		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549165	ENST00000479608		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549165	ENST00000444670		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000549165	ENST00000457135		ChiTaRS3.1			AI027747	GNPTAB	chr12	102139569	+	ARID2	chr12	46127830	-
intron-intron	ENST00000406337	ENST00000262367		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000406337	ENST00000382070		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000265713	ENST00000262367		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000265713	ENST00000382070		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000396930	ENST00000262367		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000396930	ENST00000382070		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000485568	ENST00000262367		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
intron-intron	ENST00000485568	ENST00000382070		ChiTaRS3.1			AJ315158	KAT6A	chr8	41793759	-	CREBBP	chr16	3926060	-
Frame-shit	ENST00000379802	ENST00000379802		ChiTaRS3.1			AW391547	DSP	chr6	7585347	-	DSP	chr6	7585212	+
In-frame	ENST00000379802	ENST00000418664		ChiTaRS3.1			AW391547	DSP	chr6	7585347	-	DSP	chr6	7585212	+
In-frame	ENST00000418664	ENST00000379802		ChiTaRS3.1			AW391547	DSP	chr6	7585347	-	DSP	chr6	7585212	+
Frame-shit	ENST00000418664	ENST00000418664		ChiTaRS3.1			AW391547	DSP	chr6	7585347	-	DSP	chr6	7585212	+
intron-intron	ENST00000515037	ENST00000367602		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
intron-intron	ENST00000515037	ENST00000367600		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
5UTR-intron	ENST00000358869	ENST00000367602		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
5UTR-intron	ENST00000358869	ENST00000367600		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
intron-intron	ENST00000513966	ENST00000367602		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
intron-intron	ENST00000513966	ENST00000367600		ChiTaRS3.1			BF996657	FAM114A1	chr4	38870162	+	QSOX1	chr1	180139210	-
intron-intron	ENST00000376851	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376851	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376851	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376851	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000310157	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000310157	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000310157	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000310157	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000391808	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000391808	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000391808	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000391808	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000456750	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000456750	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000456750	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000456750	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376853	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376853	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376853	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000376853	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000594641	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000594641	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000594641	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000594641	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000424910	ENST00000394532		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000424910	ENST00000309032		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000424910	ENST00000544785		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
intron-intron	ENST00000424910	ENST00000394531		ChiTaRS3.1			BE717737	KLK6	chr19	51470504	-	BAD	chr11	64046471	+
5CDS-intron	ENST00000372476	ENST00000280886		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
5CDS-intron	ENST00000372476	ENST00000381496		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
5CDS-intron	ENST00000372476	ENST00000540204		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
5CDS-intron	ENST00000433781	ENST00000280886		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
5CDS-intron	ENST00000433781	ENST00000381496		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
5CDS-intron	ENST00000433781	ENST00000540204		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000538015	ENST00000280886		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000538015	ENST00000381496		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000538015	ENST00000540204		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000441333	ENST00000280886		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000441333	ENST00000381496		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000441333	ENST00000540204		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
3UTR-intron	ENST00000473014	ENST00000280886		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
3UTR-intron	ENST00000473014	ENST00000381496		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
3UTR-intron	ENST00000473014	ENST00000540204		ChiTaRS3.1			BF995977	TIE1	chr1	43783670	-	DIP2C	chr10	697659	-
intron-intron	ENST00000455895	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000455895	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000413080	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000341071	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000526031	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000419121	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000446293	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000463967	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000450793		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000538141		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000380180		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000318007		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000437932		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000317968		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000542407		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000508216		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000514743		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000380176		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000359265		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000512274		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
intron-intron	ENST00000449308	ENST00000504489		ChiTaRS3.1			BF991287	BSDC1	chr1	32838444	+	PDLIM5	chr4	95498510	+
3UTR-3UTR	ENST00000299518	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000299518	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000299518	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000299518	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000299518	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000299518	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558554	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558554	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558554	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000558554	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558554	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000558554	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000559205	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000559205	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000559205	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000559205	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000559205	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000559205	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000441490	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000441490	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000441490	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000441490	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000441490	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000441490	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558535	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558535	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558535	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000558535	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-3UTR	ENST00000558535	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
3UTR-intron	ENST00000558535	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000561366	ENST00000299518		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000561366	ENST00000558554		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000561366	ENST00000559205		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000561366	ENST00000441490		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000561366	ENST00000558535		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-intron	ENST00000561366	ENST00000561366		ChiTaRS3.1			AI571707	IDH3A	chr15	78461816	-	IDH3A	chr15	78461510	+
intron-3UTR	ENST00000394287	ENST00000372844		ChiTaRS3.1			H19757	MED1	chr17	37565572	-	HPCAL4	chr1	40144881	-
intron-3UTR	ENST00000300651	ENST00000372844		ChiTaRS3.1			H19757	MED1	chr17	37565572	-	HPCAL4	chr1	40144881	-
intron-intron	ENST00000264161	ENST00000360647		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000468369		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000484491		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000544464		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000492394		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000485866		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000264161	ENST00000497929		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000360647		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000468369		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000484491		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000544464		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000492394		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000485866		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000537273	ENST00000497929		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000360647		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000468369		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000484491		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000544464		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000492394		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000485866		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-intron	ENST00000463008	ENST00000497929		ChiTaRS3.1			AF090907	DARS	chr2	136671049	+	ZNF148	chr3	125029129	+
intron-3CDS	ENST00000372782	ENST00000372782		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000372782	ENST00000494068		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000372782	ENST00000540921		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000372782	ENST00000458570		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-3CDS	ENST00000494068	ENST00000372782		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000494068	ENST00000494068		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000494068	ENST00000540921		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000494068	ENST00000458570		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-3CDS	ENST00000540921	ENST00000372782		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000540921	ENST00000494068		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000540921	ENST00000540921		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000540921	ENST00000458570		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-3CDS	ENST00000458570	ENST00000372782		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000458570	ENST00000494068		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000458570	ENST00000540921		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-5UTR	ENST00000458570	ENST00000458570		ChiTaRS3.1			CA313807	ZMAT1	chrX	101138552	+	ZMAT1	chrX	101138959	-
intron-intron	ENST00000523629	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000523629	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000396218	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000265814	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000360348	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000436581	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000520724	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000518844	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000522163	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000422361	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000344691		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000325074		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000437180		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000300305		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000399240		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000486278		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000494829		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
intron-intron	ENST00000521553	ENST00000358356		ChiTaRS3.1			DQ202692	RUNX1T1	chr8	93086896	-	RUNX1	chr21	36211486	-
3UTR-3UTR	ENST00000263238	ENST00000379565		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
3UTR-intron	ENST00000263238	ENST00000544447		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
3UTR-intron	ENST00000263238	ENST00000379548		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
3UTR-intron	ENST00000263238	ENST00000540702		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
3UTR-intron	ENST00000263238	ENST00000479809		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-3UTR	ENST00000536059	ENST00000379565		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000536059	ENST00000544447		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000536059	ENST00000379548		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000536059	ENST00000540702		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000536059	ENST00000479809		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-3UTR	ENST00000535589	ENST00000379565		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000535589	ENST00000544447		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000535589	ENST00000379548		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000535589	ENST00000540702		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000535589	ENST00000479809		ChiTaRS3.1			CA843287	ACTR3	chr2	114715521	-	RPS6KA3	chrX	20171470	+
intron-intron	ENST00000358691	ENST00000308664		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000358691	ENST00000395494		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000358691	ENST00000539276		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000358691	ENST00000550248		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000358691	ENST00000552636		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580168	ENST00000308664		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580168	ENST00000395494		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580168	ENST00000539276		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580168	ENST00000550248		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580168	ENST00000552636		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580662	ENST00000308664		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580662	ENST00000395494		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580662	ENST00000539276		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580662	ENST00000550248		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000580662	ENST00000552636		ChiTaRS3.1			BG979337	HELZ	chr17	65076657	+	ATP2A2	chr12	110724230	-
intron-intron	ENST00000419277	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000419277	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000428995	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000463066	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000443117	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551196	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000480521	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000415247	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000484255	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000454805	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000549300	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000475500	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000374808	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000552158	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000488565	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000383224	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000551933	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000474244	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000422504	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550806	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000494775	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000515317	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000550456	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000421515		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000388759		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000443659		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000425478		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000437230		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000412028		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000415901		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
intron-intron	ENST00000502285	ENST00000416026		ChiTaRS3.1			BG542717	HLA-DPA1	chr6	4513516	-	NKIRAS1	chr3	23961370	+
3UTR-intron	ENST00000323534	ENST00000355973		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000376977		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000377016		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000377012		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000377034		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000449163		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000452300		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000547410		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000546913		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000550428		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000489750		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000419674		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000439457		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000438094		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000548767		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000486623		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000434660		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000423604		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000414980		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000417759		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000551140		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000446436		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000471103		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000443440		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000425097		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383543		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000552399		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383537		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000493602		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383541		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383542		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383639		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000551423		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383636		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000495153		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383637		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000383638		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000448754		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000550820		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000458612		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000464091		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000440316		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
3UTR-intron	ENST00000323534	ENST00000418225		ChiTaRS3.1			AW970387	RAP2B	chr3	152881552	-	GABBR1	chr6	29574656	+
intron-intron	ENST00000393805	ENST00000393805		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000377332		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000525834		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000484728		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393805	ENST00000393808		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000393805		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000377332		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000525834		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000484728		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000377332	ENST00000393808		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000393805		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000377332		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000525834		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000484728		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000525834	ENST00000393808		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000393805		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000377332		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000525834		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000484728		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000484728	ENST00000393808		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000393805		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000377332		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000525834		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000484728		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000393808	ENST00000393808		ChiTaRS3.1			BF933057	ST3GAL5	chr2	86106184	-	ST3GAL5	chr2	86106439	+
intron-intron	ENST00000417225	ENST00000417225		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000417225	ENST00000443527		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000417225	ENST00000473199		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000443527	ENST00000417225		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000443527	ENST00000443527		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000443527	ENST00000473199		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000473199	ENST00000417225		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000473199	ENST00000443527		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
intron-intron	ENST00000473199	ENST00000473199		ChiTaRS3.1			AW858937	CRY2	chr11	45888810	-	CRY2	chr11	45894354	-
In-frame	ENST00000405201	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000405201	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000405201	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000405201	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000404621	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000404621	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000404621	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000404621	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000404121	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000404121	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000404121	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000404121	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000356219	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000356219	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000356219	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000356219	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000397355	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000397355	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000397355	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000397355	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000429285	ENST00000338970		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000429285	ENST00000396203		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000429285	ENST00000416518		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
5CDS-intron	ENST00000429285	ENST00000461368		ChiTaRS3.1			BC033087	NCOR2	chr12	124904505	-	RPL14	chr3	40503542	+
Frame-shit	ENST00000591471	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000591471	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000589218	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000589218	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
In-frame	ENST00000544914	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000544914	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000591417	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591417	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000592168	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000592168	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
Frame-shit	ENST00000392153	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000392153	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
In-frame	ENST00000589392	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000589392	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
In-frame	ENST00000324411	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000324411	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000591259	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591259	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
Frame-shit	ENST00000541583	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
5CDS-intron	ENST00000541583	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000591134	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000591134	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-3CDS	ENST00000586897	ENST00000591471		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000589218		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000544914		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000591417		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000592168		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000392153		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000589392		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000324411		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000591259		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000541583		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000591134		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
intron-intron	ENST00000586897	ENST00000586897		ChiTaRS3.1			BF352587	HKR1	chr19	37853755	-	HKR1	chr19	37853956	+
In-frame	ENST00000446845	ENST00000316448		ChiTaRS3.1			BE005287	OXSR1	chr3	38284244	-	CALR	chr19	13051124	-
In-frame	ENST00000311806	ENST00000316448		ChiTaRS3.1			BE005287	OXSR1	chr3	38284244	-	CALR	chr19	13051124	-
intron-3CDS	ENST00000492714	ENST00000316448		ChiTaRS3.1			BE005287	OXSR1	chr3	38284244	-	CALR	chr19	13051124	-
intron-3CDS	ENST00000483260	ENST00000483260		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000483260	ENST00000474861		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000483260	ENST00000602318		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000483260	ENST00000256644		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000483260	ENST00000602858		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000474861	ENST00000483260		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000474861	ENST00000474861		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000474861	ENST00000602318		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000474861	ENST00000256644		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000474861	ENST00000602858		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602318	ENST00000483260		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602318	ENST00000474861		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602318	ENST00000602318		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602318	ENST00000256644		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602318	ENST00000602858		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000256644	ENST00000483260		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000256644	ENST00000474861		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000256644	ENST00000602318		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000256644	ENST00000256644		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000256644	ENST00000602858		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602858	ENST00000483260		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602858	ENST00000474861		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602858	ENST00000602318		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602858	ENST00000256644		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-3CDS	ENST00000602858	ENST00000602858		ChiTaRS3.1			CB159127	LAMTOR5	chr1	110950286	+	LAMTOR5	chr1	110944163	-
intron-intron	ENST00000355151	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000355151	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397496	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555345	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000432849	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000553711	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000397505	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000557221	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000311892	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000556840	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000461594	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000355151		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000397496		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000555345		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000432849		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000553711		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000397505		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000557221		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000311892		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000556840		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000461594		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000555536	ENST00000555536		ChiTaRS3.1			BF509847	MRPL52	chr14	23301188	-	MRPL52	chr14	23301576	-
intron-intron	ENST00000396838	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000396838	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000396838	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000396838	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000396838	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000414429	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000414429	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000414429	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000414429	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000414429	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000481934	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000481934	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000481934	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000481934	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000481934	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000439158	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000439158	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000439158	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000439158	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000439158	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000446474	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000446474	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000446474	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000446474	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000446474	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000344279	ENST00000537532		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000344279	ENST00000539644		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000344279	ENST00000392404		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000344279	ENST00000538932		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000344279	ENST00000337815		ChiTaRS3.1			BE240817	ZSCAN31	chr6	28294083	-	ZNF664	chr12	124496962	+
intron-intron	ENST00000514921	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000514921	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000514921	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000274897	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000274897	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000274897	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370877	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370877	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370877	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000509997	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000509997	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000509997	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370876	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370876	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000370876	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000511744	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000511744	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000511744	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000358276	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000358276	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000358276	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000502396	ENST00000527524		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000502396	ENST00000438375		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-intron	ENST00000502396	ENST00000527130		ChiTaRS3.1			BF929277	MLIP	chr6	54032856	+	GRIK4	chr11	120426988	+
intron-3UTR	ENST00000409720	ENST00000360507		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
intron-3UTR	ENST00000409720	ENST00000409789		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
intron-3UTR	ENST00000356853	ENST00000360507		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
intron-3UTR	ENST00000356853	ENST00000409789		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
intron-3UTR	ENST00000483627	ENST00000360507		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
intron-3UTR	ENST00000483627	ENST00000409789		ChiTaRS3.1			BE089557	NHEJ1	chr2	219940368	-	CNPPD1	chr2	220037166	-
3UTR-3UTR	ENST00000157812	ENST00000339464		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000157812	ENST00000409496		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000157812	ENST00000410089		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000157812	ENST00000410058		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-3UTR	ENST00000455878	ENST00000339464		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000455878	ENST00000409496		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000455878	ENST00000410089		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
3UTR-intron	ENST00000455878	ENST00000410058		ChiTaRS3.1			AI143487	PSMC4	chr19	40487233	-	WNT7B	chr22	46316371	-
intron-3UTR	ENST00000546373	ENST00000297625		ChiTaRS3.1			BF590847	CPM	chr12	69316745	+	KIAA1161	chr9	34369680	+
intron-3UTR	ENST00000551568	ENST00000297625		ChiTaRS3.1			BF590847	CPM	chr12	69316745	+	KIAA1161	chr9	34369680	+
intron-3UTR	ENST00000338356	ENST00000297625		ChiTaRS3.1			BF590847	CPM	chr12	69316745	+	KIAA1161	chr9	34369680	+
intron-3UTR	ENST00000549691	ENST00000297625		ChiTaRS3.1			BF590847	CPM	chr12	69316745	+	KIAA1161	chr9	34369680	+
intron-intron	ENST00000553891	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000318876	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000556143	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000394207	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000555072	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000554145	ENST00000370664		ChiTaRS3.1			BE182407	ZFYVE1	chr14	73446521	+	UBTD1	chr10	99314829	-
intron-intron	ENST00000239944	ENST00000367689		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000357444		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000251507		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000325589		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000367686		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000367687		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000347255		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000489615		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000478442		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000486220		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000392064		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000239944	ENST00000367688		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000367689		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000357444		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000251507		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000325589		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000367686		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000367687		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000347255		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000489615		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000478442		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000486220		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000392064		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000479209	ENST00000367688		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000367689		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000357444		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000251507		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000325589		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000367686		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000367687		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000347255		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000489615		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000478442		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000486220		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000392064		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000487153	ENST00000367688		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000367689		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000357444		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000251507		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000325589		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000367686		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000367687		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000347255		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000489615		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000478442		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000486220		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000392064		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000491660	ENST00000367688		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000367689		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000357444		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000251507		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000325589		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000367686		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000367687		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000347255		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000489615		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000478442		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000486220		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000392064		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-intron	ENST00000490945	ENST00000367688		ChiTaRS3.1			BF089547	SERP1	chr3	150260429	-	RABGAP1L	chr1	174439451	-
intron-3CDS	ENST00000290231	ENST00000290231		ChiTaRS3.1			BG997187	NCOA5	chr20	44691656	+	NCOA5	chr20	44692060	-
intron-intron	ENST00000557016	ENST00000357992		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000557016	ENST00000289703		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000557016	ENST00000468523		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000216520	ENST00000357992		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000216520	ENST00000289703		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000216520	ENST00000468523		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000555373	ENST00000357992		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000555373	ENST00000289703		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-intron	ENST00000555373	ENST00000468523		ChiTaRS3.1			AI420217	ERH	chr14	69846917	+	ELK4	chr1	205599497	+
intron-3CDS	ENST00000372189	ENST00000286648		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372189	ENST00000504952		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372189	ENST00000504730		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372195	ENST00000286648		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372195	ENST00000504952		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372195	ENST00000504730		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372190	ENST00000286648		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372190	ENST00000504952		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000372190	ENST00000504730		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000481260	ENST00000286648		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000481260	ENST00000504952		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-3CDS	ENST00000481260	ENST00000504730		ChiTaRS3.1			BG315007	RAPGEF1	chr9	134454093	-	DCK	chr4	71888262	-
intron-intron	ENST00000556679	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000556679		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000456570		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000477310		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000425368		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000497841		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000417261		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000427888		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000459734		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000455591		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000433503		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000474621		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000424727		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000436692		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000473139		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000399981		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419920		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000465211		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000375455		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000489605		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000426239		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419411		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000460958		ChiTaRS3.1			AW363557	CFB	chr6	3251225	+	CFB	chr6	3249926	+
3UTR-3CDS	ENST00000400068	ENST00000301785		ChiTaRS3.1			BF062437	SIRPA	chr20	1920152	-	HNRNPUL2	chr11	62491868	+
3UTR-3CDS	ENST00000356025	ENST00000301785		ChiTaRS3.1			BF062437	SIRPA	chr20	1920152	-	HNRNPUL2	chr11	62491868	+
3UTR-3CDS	ENST00000358771	ENST00000301785		ChiTaRS3.1			BF062437	SIRPA	chr20	1920152	-	HNRNPUL2	chr11	62491868	+
3UTR-3UTR	ENST00000537561	ENST00000372676		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-intron	ENST00000537561	ENST00000217425		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000537561	ENST00000339946		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000537561	ENST00000488143		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000537561	ENST00000342873		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000359850	ENST00000372676		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-intron	ENST00000359850	ENST00000217425		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000359850	ENST00000339946		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000359850	ENST00000488143		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000359850	ENST00000342873		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000521288	ENST00000372676		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-intron	ENST00000521288	ENST00000217425		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000521288	ENST00000339946		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000521288	ENST00000488143		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
3UTR-3UTR	ENST00000521288	ENST00000342873		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
intron-3UTR	ENST00000502852	ENST00000372676		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
intron-intron	ENST00000502852	ENST00000217425		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
intron-3UTR	ENST00000502852	ENST00000339946		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
intron-3UTR	ENST00000502852	ENST00000488143		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
intron-3UTR	ENST00000502852	ENST00000342873		ChiTaRS3.1			BU680617	NUDT16	chr3	131107127	-	WFDC2	chr20	44110102	+
5UTR-intron	ENST00000303204	ENST00000452313		ChiTaRS3.1			BC023617	PRELID1	chr5	176730822	-	NPIPB7	chr16	28856140	-
intron-intron	ENST00000503216	ENST00000452313		ChiTaRS3.1			BC023617	PRELID1	chr5	176730822	-	NPIPB7	chr16	28856140	-
intron-intron	ENST00000502670	ENST00000452313		ChiTaRS3.1			BC023617	PRELID1	chr5	176730822	-	NPIPB7	chr16	28856140	-
intron-intron	ENST00000222990	ENST00000222990		ChiTaRS3.1			BF771547	SNX8	chr7	2331650	+	SNX8	chr7	2345744	-
intron-intron	ENST00000266088	ENST00000266088		ChiTaRS3.1			AW135987	SLC5A1	chr22	32466601	-	SLC5A1	chr22	32467150	-
intron-intron	ENST00000266088	ENST00000543737		ChiTaRS3.1			AW135987	SLC5A1	chr22	32466601	-	SLC5A1	chr22	32467150	-
intron-intron	ENST00000543737	ENST00000266088		ChiTaRS3.1			AW135987	SLC5A1	chr22	32466601	-	SLC5A1	chr22	32467150	-
intron-intron	ENST00000543737	ENST00000543737		ChiTaRS3.1			AW135987	SLC5A1	chr22	32466601	-	SLC5A1	chr22	32467150	-
intron-intron	ENST00000355072	ENST00000355072		ChiTaRS3.1			BQ028307	HTT	chr4	3098738	-	HTT	chr14	104978094	-
intron-intron	ENST00000355072	ENST00000513806		ChiTaRS3.1			BQ028307	HTT	chr4	3098738	-	HTT	chr14	104978094	-
intron-intron	ENST00000513806	ENST00000355072		ChiTaRS3.1			BQ028307	HTT	chr4	3098738	-	HTT	chr14	104978094	-
intron-intron	ENST00000513806	ENST00000513806		ChiTaRS3.1			BQ028307	HTT	chr4	3098738	-	HTT	chr14	104978094	-
intron-3CDS	ENST00000377892	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377892	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377892	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377890	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377890	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377891	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377891	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377889	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377889	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000535296	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000535296	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3UTR	ENST00000338663	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-5UTR	ENST00000338663	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000538682	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000538682	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377892		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377890		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377891		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377889		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000535296		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000338663		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000536981	ENST00000538682		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000536981	ENST00000536981		ChiTaRS3.1			BQ354047	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			BE843367	NEAT1	chr11	65190632	-	NEAT1	chr11	65194978	+
5UTR-intron	ENST00000396212	ENST00000389462		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000396212	ENST00000309083		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000396212	ENST00000538057		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-intron	ENST00000381396	ENST00000389462		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000381396	ENST00000309083		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000381396	ENST00000538057		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
3UTR-intron	ENST00000573412	ENST00000389462		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
3UTR-3UTR	ENST00000573412	ENST00000309083		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
3UTR-3UTR	ENST00000573412	ENST00000538057		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-intron	ENST00000396208	ENST00000389462		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000396208	ENST00000309083		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
5UTR-3UTR	ENST00000396208	ENST00000538057		ChiTaRS3.1			BM041237	CCP110	chr16	19535330	+	PTMS	chr12	6879720	+
3UTR-3CDS	ENST00000373302	ENST00000373302		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
3UTR-3CDS	ENST00000373302	ENST00000373299		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
3UTR-3UTR	ENST00000373302	ENST00000481942		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
3UTR-3CDS	ENST00000373299	ENST00000373302		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
3UTR-3CDS	ENST00000373299	ENST00000373299		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
3UTR-3UTR	ENST00000373299	ENST00000481942		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
intron-3CDS	ENST00000481942	ENST00000373302		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
intron-3CDS	ENST00000481942	ENST00000373299		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
intron-3UTR	ENST00000481942	ENST00000481942		ChiTaRS3.1			BP250257	STXBP1	chr9	130453823	+	STXBP1	chr9	130435472	+
intron-3UTR	ENST00000358290	ENST00000358290		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000358290	ENST00000507518		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000358290	ENST00000507286		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-3UTR	ENST00000507518	ENST00000358290		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000507518	ENST00000507518		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000507518	ENST00000507286		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-3UTR	ENST00000507286	ENST00000358290		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000507286	ENST00000507518		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
intron-intron	ENST00000507286	ENST00000507286		ChiTaRS3.1			AW022407	HSD17B11	chr4	88257946	+	HSD17B11	chr4	88257839	-
3UTR-3CDS	ENST00000326974	ENST00000356654		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
3UTR-3CDS	ENST00000326974	ENST00000396684		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
3UTR-3CDS	ENST00000244670	ENST00000356654		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
3UTR-3CDS	ENST00000244670	ENST00000396684		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
3UTR-3CDS	ENST00000332245	ENST00000356654		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
3UTR-3CDS	ENST00000332245	ENST00000396684		ChiTaRS3.1			L10377	KLHDC3	chr6	42988543	+	ATN1	chr12	7045837	+
intron-3UTR	ENST00000322231	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322231	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322231	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322231	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322231	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322231	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322231	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000339077	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000339077	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000339077	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000339077	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000339077	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000339077	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000339077	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000539124	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000539124	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000539124	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000539124	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000539124	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000539124	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000539124	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000542558	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000542558	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000542558	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000542558	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000542558	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000542558	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000542558	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000409689	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000409689	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000409689	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000409689	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000409689	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000409689	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000409689	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545443	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545443	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545443	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545443	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545443	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545443	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545443	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000479288	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000479288	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000479288	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000479288	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000479288	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000479288	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000479288	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322275	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322275	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322275	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000322275	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322275	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322275	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000322275	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000410047	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000410047	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000410047	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000410047	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000410047	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000410047	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000410047	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545771	ENST00000216267		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545771	ENST00000404034		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545771	ENST00000404760		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-3UTR	ENST00000545771	ENST00000457780		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545771	ENST00000542442		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545771	ENST00000342989		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000545771	ENST00000459821		ChiTaRS3.1			T07017	KLHL7	chr7	23182025	+	BRD1	chr22	50167135	+
intron-intron	ENST00000356082	ENST00000465878		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000379655		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000445690		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000421376		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000541240		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000540079		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000543930		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000562903		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000539578		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000356082	ENST00000566975		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000465878		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000379655		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000445690		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000421376		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000541240		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000540079		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000543930		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000562903		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000539578		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000391911	ENST00000566975		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000465878		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000379655		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000445690		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000421376		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000541240		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000540079		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000543930		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000562903		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000539578		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
intron-intron	ENST00000367030	ENST00000566975		ChiTaRS3.1			BE715187	LAMB3	chr1	209791973	+	KIFC3	chr16	57818761	-
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			D82127	TMEM50A	chr1	25688785	-	TMEM50A	chr1	25688758	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			D82127	TMEM50A	chr1	25688785	-	TMEM50A	chr1	25688758	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			D82127	TMEM50A	chr1	25688785	-	TMEM50A	chr1	25688758	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			D82127	TMEM50A	chr1	25688785	-	TMEM50A	chr1	25688758	+
intron-3CDS	ENST00000293328	ENST00000198765		ChiTaRS3.1			BE082977	STAT5B	chr17	40351698	+	CPNE3	chr8	87570548	-
intron-3CDS	ENST00000293328	ENST00000521271		ChiTaRS3.1			BE082977	STAT5B	chr17	40351698	+	CPNE3	chr8	87570548	-
In-frame	ENST00000220876	ENST00000441802		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
5CDS-intron	ENST00000220876	ENST00000512347		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
In-frame	ENST00000518111	ENST00000441802		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
5CDS-intron	ENST00000518111	ENST00000512347		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
In-frame	ENST00000518491	ENST00000441802		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
5CDS-intron	ENST00000518491	ENST00000512347		ChiTaRS3.1			BF963877	STMN2	chr8	80567176	-	FAT1	chr4	187628005	+
3UTR-3UTR	ENST00000377275	ENST00000377275		ChiTaRS3.1			BE093787	ARL5B	chr10	18968035	-	ARL5B	chr10	18968106	+
intron-intron	ENST00000434974	ENST00000310924		ChiTaRS3.1			AI990017	LINC00856	chr10	80235828	+	TBC1D16	chr17	77924676	+
intron-intron	ENST00000434974	ENST00000576768		ChiTaRS3.1			AI990017	LINC00856	chr10	80235828	+	TBC1D16	chr17	77924676	+
intron-intron	ENST00000434974	ENST00000340848		ChiTaRS3.1			AI990017	LINC00856	chr10	80235828	+	TBC1D16	chr17	77924676	+
intron-intron	ENST00000434974	ENST00000572862		ChiTaRS3.1			AI990017	LINC00856	chr10	80235828	+	TBC1D16	chr17	77924676	+
intron-intron	ENST00000434974	ENST00000570373		ChiTaRS3.1			AI990017	LINC00856	chr10	80235828	+	TBC1D16	chr17	77924676	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BQ632547	MALAT1	chr11	65266722	-	MALAT1	chr11	65268022	-
5CDS-intron	ENST00000541515	ENST00000441750		ChiTaRS3.1			BF229917	LUC7L2	chr7	139086994	+	NBAS	chr2	15309509	-
5CDS-intron	ENST00000541515	ENST00000281513		ChiTaRS3.1			BF229917	LUC7L2	chr7	139086994	+	NBAS	chr2	15309509	-
intron-5UTR	ENST00000319622	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000319622	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000319622	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000319622	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000319622	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000319622	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000319622	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000319622	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565184	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565184	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565184	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565184	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565184	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565184	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565184	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565184	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000389093	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000389093	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000389093	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000389093	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000389093	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000389093	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000389093	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000389093	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000335181	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000335181	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000335181	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000335181	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000335181	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000335181	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000335181	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000335181	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568883	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568883	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568883	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568883	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568883	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568883	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568883	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568883	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000449901	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000449901	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000449901	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000449901	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000449901	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000449901	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000449901	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000449901	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565154	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565154	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565154	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565154	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565154	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565154	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000565154	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000565154	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568459	ENST00000319622		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568459	ENST00000565184		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568459	ENST00000389093		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568459	ENST00000335181		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568459	ENST00000568883		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568459	ENST00000449901		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-5UTR	ENST00000568459	ENST00000565154		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-intron	ENST00000568459	ENST00000568459		ChiTaRS3.1			CN481707	PKM	chr15	72509806	-	PKM	chr15	72523325	-
intron-3UTR	ENST00000264896	ENST00000264896		ChiTaRS3.1			BE762697	SCARB2	chr4	77080112	+	SCARB2	chr4	77080135	-
intron-intron	ENST00000264896	ENST00000452464		ChiTaRS3.1			BE762697	SCARB2	chr4	77080112	+	SCARB2	chr4	77080135	-
intron-3UTR	ENST00000452464	ENST00000264896		ChiTaRS3.1			BE762697	SCARB2	chr4	77080112	+	SCARB2	chr4	77080135	-
intron-intron	ENST00000452464	ENST00000452464		ChiTaRS3.1			BE762697	SCARB2	chr4	77080112	+	SCARB2	chr4	77080135	-
intron-intron	ENST00000342066	ENST00000370613		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000337540		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000370610		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000357540		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000393677		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000453958		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000359980		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000356257		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000342066	ENST00000477521		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000370613		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000337540		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000370610		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000357540		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000393677		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000453958		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000359980		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000356257		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-intron	ENST00000478729	ENST00000477521		ChiTaRS3.1			AI948457	SAMD11	chr1	880009	+	ZFYVE27	chr10	99516945	-
intron-3CDS	ENST00000317173	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000441698	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000518255	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000521209	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000528246	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000382490	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
intron-3CDS	ENST00000517594	ENST00000368738		ChiTaRS3.1			BF873587	MSRA	chr8	10202112	-	S100A9	chr1	153333194	+
3UTR-intron	ENST00000534336	ENST00000269141		ChiTaRS3.1			DW419187	MALAT1	chr11	65266676	+	CDH2	chr18	25591338	-
3UTR-intron	ENST00000534336	ENST00000399380		ChiTaRS3.1			DW419187	MALAT1	chr11	65266676	+	CDH2	chr18	25591338	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW464867	MALAT1	chr11	65267625	+	MALAT1	chr11	65266715	+
intron-intron	ENST00000244230	ENST00000396360		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000435032		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000290317		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000279027		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000472148		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000413164		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000495082		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000372121		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000464518		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000417157		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000244230	ENST00000339636		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000396360		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000435032		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000290317		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000279027		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000472148		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000413164		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000495082		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000372121		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000464518		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000417157		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000498451	ENST00000339636		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000396360		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000435032		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000290317		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000279027		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000472148		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000413164		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000495082		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000372121		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000464518		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000417157		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000468427	ENST00000339636		ChiTaRS3.1			AW606827	MPHOSPH10	chr2	71368364	-	SLC13A3	chr20	45260144	-
intron-intron	ENST00000379251	ENST00000379251		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379251	ENST00000379253		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379251	ENST00000379254		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379251	ENST00000379270		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-3UTR	ENST00000379251	ENST00000489394		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379253	ENST00000379251		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379253	ENST00000379253		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379253	ENST00000379254		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000379253	ENST00000379270		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-3UTR	ENST00000379253	ENST00000489394		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379254	ENST00000379251		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379254	ENST00000379253		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379254	ENST00000379254		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379254	ENST00000379270		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-3UTR	ENST00000379254	ENST00000489394		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379270	ENST00000379251		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379270	ENST00000379253		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379270	ENST00000379254		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-intron	ENST00000379270	ENST00000379270		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
5CDS-3UTR	ENST00000379270	ENST00000489394		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
3UTR-intron	ENST00000489394	ENST00000379251		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
3UTR-intron	ENST00000489394	ENST00000379253		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
3UTR-intron	ENST00000489394	ENST00000379254		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
3UTR-intron	ENST00000489394	ENST00000379270		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
3UTR-3UTR	ENST00000489394	ENST00000489394		ChiTaRS3.1			AW582417	SAT1	chrX	23803948	-	SAT1	chrX	23803841	+
intron-intron	ENST00000316403	ENST00000357731		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000316403	ENST00000306821		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000316403	ENST00000434200		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000316403	ENST00000467479		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000546343	ENST00000357731		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000546343	ENST00000306821		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000546343	ENST00000434200		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000546343	ENST00000467479		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000560366	ENST00000357731		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000560366	ENST00000306821		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000560366	ENST00000434200		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000560366	ENST00000467479		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000405140	ENST00000357731		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000405140	ENST00000306821		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000405140	ENST00000434200		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000405140	ENST00000467479		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000523500	ENST00000357731		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000523500	ENST00000306821		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000523500	ENST00000434200		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000523500	ENST00000467479		ChiTaRS3.1			AA968587	CLU	chr8	27466071	+	NEGR1	chr1	72316573	+
intron-intron	ENST00000482399	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000482399	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000482399	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000482399	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000445902	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000445902	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000445902	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000445902	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000478934	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000478934	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000478934	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000478934	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000436044	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000436044	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000436044	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000436044	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000448042	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000448042	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000448042	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000448042	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000488583	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000488583	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000488583	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000488583	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000441058	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000441058	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000441058	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000441058	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000471761	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000471761	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000471761	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000471761	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000443860	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000443860	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000443860	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000443860	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000483351	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000483351	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000483351	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000483351	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000383210	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000383210	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000383210	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000383210	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000489236	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000489236	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000489236	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000489236	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000485418	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000485418	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000485418	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000485418	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000421357	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000421357	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000421357	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000421357	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000428608	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000428608	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000428608	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000428608	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000484649	ENST00000447866		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000484649	ENST00000368356		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000484649	ENST00000487002		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
intron-intron	ENST00000484649	ENST00000356657		ChiTaRS3.1			CA312317	VPS52	chr6	4708717	+	FDPS	chr1	155285195	-
5UTR-intron	ENST00000435085	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5UTR-intron	ENST00000307198	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5UTR-intron	ENST00000419228	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000447974	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000289488	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5UTR-intron	ENST00000539271	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000423494	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5UTR-intron	ENST00000539587	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000538478	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000324866	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000439209	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000541614	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5CDS-intron	ENST00000536917	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
5UTR-intron	ENST00000440313	ENST00000338779		ChiTaRS3.1			BF904917	LRTOMT	chr11	71806105	-	MTSS1L	chr16	70710269	-
intron-3CDS	ENST00000374316	ENST00000250113		ChiTaRS3.1			BF848867	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-intron	ENST00000374316	ENST00000573057		ChiTaRS3.1			BF848867	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-3CDS	ENST00000605930	ENST00000250113		ChiTaRS3.1			BF848867	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-intron	ENST00000605930	ENST00000573057		ChiTaRS3.1			BF848867	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
In-frame	ENST00000378628	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000378628	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000378628	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3CDS	ENST00000491253	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
intron-3UTR	ENST00000491253	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000543642	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000543642	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000542554	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000542554	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000449135	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000449135	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000378482		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000422612		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000545599		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
In-frame	ENST00000463135	ENST00000286824		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-3UTR	ENST00000463135	ENST00000488893		ChiTaRS3.1			AK303697	PRRG1	chrX	37285253	+	TSPAN7	chrX	38525375	+
5CDS-intron	ENST00000402696	ENST00000466411		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000435050		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000431918		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000340958		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000466411		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000435050		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000431918		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000340958		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000466411		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000435050		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000431918		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000340958		ChiTaRS3.1			AI110837	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-5UTR	ENST00000271277	ENST00000340384		ChiTaRS3.1			BE903667	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-5UTR	ENST00000607039	ENST00000340384		ChiTaRS3.1			BE903667	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-3UTR	ENST00000372390	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372390	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372390	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372390	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372390	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372390	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372390	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372390	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372397	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372397	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372397	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000315660	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000315660	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000315660	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372383	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372383	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372383	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372384	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372384	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372384	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000372382	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372382	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000372382	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000506081	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000506081	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000506081	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000372390		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000372397		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000315660		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000372383		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000372384		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-3UTR	ENST00000514426	ENST00000372382		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000514426	ENST00000506081		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-intron	ENST00000514426	ENST00000514426		ChiTaRS3.1			AA099067	TSC22D3	chrX	106957335	+	TSC22D3	chrX	106957239	-
intron-5UTR	ENST00000324093	ENST00000528498		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000324093	ENST00000528900		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000324093	ENST00000405097		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000324093	ENST00000530301		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000324093	ENST00000343115		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-intron	ENST00000324093	ENST00000544551		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000393239	ENST00000528498		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000393239	ENST00000528900		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000393239	ENST00000405097		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000393239	ENST00000530301		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000393239	ENST00000343115		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-intron	ENST00000393239	ENST00000544551		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000504689	ENST00000528498		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000504689	ENST00000528900		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000504689	ENST00000405097		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000504689	ENST00000530301		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-5UTR	ENST00000504689	ENST00000343115		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
intron-intron	ENST00000504689	ENST00000544551		ChiTaRS3.1			DR979737	PLXND1	chr3	129274275	+	RDX	chr11	110150482	-
5CDS-intron	ENST00000356654	ENST00000357641		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000356654	ENST00000339717		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000356654	ENST00000534694		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000356654	ENST00000543502		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000356654	ENST00000443324		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000356654	ENST00000534400		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000357641		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000339717		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000534694		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000543502		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000443324		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
5CDS-intron	ENST00000396684	ENST00000534400		ChiTaRS3.1			BG004007	ATN1	chr12	7045453	-	BRPF3	chr6	36195716	+
3UTR-3UTR	ENST00000372134	ENST00000372134		ChiTaRS3.1			BI047927	GHITM	chr10	85912608	-	GHITM	chr10	85912622	+
intron-intron	ENST00000265044	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000467789	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000476217	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000478842	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000463503	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000496050	ENST00000535781		ChiTaRS3.1			BQ772087	SSR3	chr3	156259394	+	PRPF6	chr20	62613686	-
intron-intron	ENST00000261531	ENST00000261531		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000261531	ENST00000554775		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000261531	ENST00000555761		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000554775	ENST00000261531		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000554775	ENST00000554775		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000554775	ENST00000555761		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000555761	ENST00000261531		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000555761	ENST00000554775		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-intron	ENST00000555761	ENST00000555761		ChiTaRS3.1			BM450257	SNW1	chr14	78187128	+	SNW1	chr14	78184880	-
intron-3UTR	ENST00000537098	ENST00000340513		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000537098	ENST00000300403		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000539778	ENST00000340513		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000539778	ENST00000300403		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000566513	ENST00000340513		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000566513	ENST00000300403		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000398040	ENST00000340513		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-3UTR	ENST00000398040	ENST00000300403		ChiTaRS3.1			BF932217	CMIP	chr16	81598907	+	TPX2	chr20	30389116	+
intron-intron	ENST00000256544	ENST00000256544		ChiTaRS3.1			BX094467	KATNBL1	chr15	34435639	-	KATNBL1	chr15	34436822	-
intron-intron	ENST00000256544	ENST00000560915		ChiTaRS3.1			BX094467	KATNBL1	chr15	34435639	-	KATNBL1	chr15	34436822	-
intron-intron	ENST00000560915	ENST00000256544		ChiTaRS3.1			BX094467	KATNBL1	chr15	34435639	-	KATNBL1	chr15	34436822	-
intron-intron	ENST00000560915	ENST00000560915		ChiTaRS3.1			BX094467	KATNBL1	chr15	34435639	-	KATNBL1	chr15	34436822	-
intron-5UTR	ENST00000326685	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000326685	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000326685	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000326685	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000326685	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000326685	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000356541	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000356541	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000356541	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000356541	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000356541	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000356541	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000309868	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000309868	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000309868	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000309868	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000309868	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000309868	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000506113	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000506113	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000506113	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000506113	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000506113	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000506113	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000504238	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000504238	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000504238	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000504238	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000504238	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000504238	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000508983	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000508983	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000508983	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000508983	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000508983	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000508983	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000517451	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000517451	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000517451	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000517451	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000517451	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000517451	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000519549	ENST00000295897		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000519549	ENST00000415165		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000519549	ENST00000503124		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000519549	ENST00000509063		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-5UTR	ENST00000519549	ENST00000401494		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
intron-intron	ENST00000519549	ENST00000505649		ChiTaRS3.1			AV654807	ABLIM3	chr5	148534150	-	ALB	chr4	74270030	+
5CDS-3UTR	ENST00000360162	ENST00000307142		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000360162	ENST00000448416		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000360162	ENST00000429713		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000360162	ENST00000434046		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-3UTR	ENST00000356080	ENST00000307142		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000356080	ENST00000448416		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000356080	ENST00000429713		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000356080	ENST00000434046		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-3UTR	ENST00000277900	ENST00000307142		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000277900	ENST00000448416		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000277900	ENST00000429713		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-intron	ENST00000277900	ENST00000434046		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
intron-3UTR	ENST00000497125	ENST00000307142		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
intron-intron	ENST00000497125	ENST00000448416		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
intron-intron	ENST00000497125	ENST00000429713		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
intron-intron	ENST00000497125	ENST00000434046		ChiTaRS3.1			CB998857	ADD3	chr10	111881888	+	SYNPO2	chr4	119980868	+
5CDS-3UTR	ENST00000545908	ENST00000356136		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000528420		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000533454		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-3UTR	ENST00000545908	ENST00000531818		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000532130		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000539288		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000525872		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000545908	ENST00000538870		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-3UTR	ENST00000216605	ENST00000356136		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000528420		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000533454		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-3UTR	ENST00000216605	ENST00000531818		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000532130		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000539288		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000525872		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
5CDS-intron	ENST00000216605	ENST00000538870		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-3UTR	ENST00000556284	ENST00000356136		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000528420		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000533454		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-3UTR	ENST00000556284	ENST00000531818		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000532130		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000539288		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000525872		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-intron	ENST00000556284	ENST00000538870		ChiTaRS3.1			BE707197	MTHFD1	chr14	64905879	+	UVRAG	chr11	75853215	-
intron-3CDS	ENST00000237530	ENST00000237530		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3CDS	ENST00000237530	ENST00000373622		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-intron	ENST00000237530	ENST00000470352		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3CDS	ENST00000373622	ENST00000237530		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3CDS	ENST00000373622	ENST00000373622		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-intron	ENST00000373622	ENST00000470352		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3CDS	ENST00000470352	ENST00000237530		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3CDS	ENST00000470352	ENST00000373622		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-intron	ENST00000470352	ENST00000470352		ChiTaRS3.1			BE075537	RPN2	chr20	35842162	-	RPN2	chr20	35833209	+
intron-3UTR	ENST00000546088	ENST00000298746		ChiTaRS3.1			BF801407	TAF1D	chr11	93469337	-	TRUB1	chr10	116735549	-
intron-intron	ENST00000546088	ENST00000485065		ChiTaRS3.1			BF801407	TAF1D	chr11	93469337	-	TRUB1	chr10	116735549	-
intron-3UTR	ENST00000448108	ENST00000298746		ChiTaRS3.1			BF801407	TAF1D	chr11	93469337	-	TRUB1	chr10	116735549	-
intron-intron	ENST00000448108	ENST00000485065		ChiTaRS3.1			BF801407	TAF1D	chr11	93469337	-	TRUB1	chr10	116735549	-
intron-intron	ENST00000509176	ENST00000306862		ChiTaRS3.1			CX779624	CCSER1	chr4	92473895	-	C5orf34	chr5	43506993	+
intron-intron	ENST00000333691	ENST00000306862		ChiTaRS3.1			CX779624	CCSER1	chr4	92473895	-	C5orf34	chr5	43506993	+
intron-intron	ENST00000432775	ENST00000306862		ChiTaRS3.1			CX779624	CCSER1	chr4	92473895	-	C5orf34	chr5	43506993	+
intron-intron	ENST00000504150	ENST00000306862		ChiTaRS3.1			CX779624	CCSER1	chr4	92473895	-	C5orf34	chr5	43506993	+
intron-intron	ENST00000389341	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000389341	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000342301	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000533720	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000526816	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529067	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560558	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000560398	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000529952	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000389341		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000342301		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000533720		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000526816		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000529067		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000560558		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000560398		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000529952		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000524801	ENST00000524801		ChiTaRS3.1			BE503697	POU2F2	chr19	42605414	+	POU2F2	chr19	42597842	+
intron-intron	ENST00000599056	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599056	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599056	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599056	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000418871	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000418871	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000418871	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000418871	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000429604	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000429604	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000429604	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000429604	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000601421	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000601421	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000601421	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000601421	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000355147	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000355147	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000355147	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000355147	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599729	ENST00000361524		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599729	ENST00000584787		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599729	ENST00000538137		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
intron-intron	ENST00000599729	ENST00000579111		ChiTaRS3.1			BF986037	ZNF160	chr19	53571386	-	ZNF521	chr18	22870139	-
5CDS-3UTR	ENST00000344921	ENST00000383777		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-3UTR	ENST00000344921	ENST00000399451		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-intron	ENST00000344921	ENST00000497037		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-3UTR	ENST00000263121	ENST00000383777		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-3UTR	ENST00000263121	ENST00000399451		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-intron	ENST00000263121	ENST00000497037		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-3UTR	ENST00000407422	ENST00000383777		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-3UTR	ENST00000407422	ENST00000399451		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
5CDS-intron	ENST00000407422	ENST00000497037		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-3UTR	ENST00000407082	ENST00000383777		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-3UTR	ENST00000407082	ENST00000399451		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-intron	ENST00000407082	ENST00000497037		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-3UTR	ENST00000477836	ENST00000383777		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-3UTR	ENST00000477836	ENST00000399451		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-intron	ENST00000477836	ENST00000497037		ChiTaRS3.1			U04847	SMARCB1	chr22	24176700	+	ANKRD28	chr3	15711424	+
intron-3UTR	ENST00000311669	ENST00000311669		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000311669	ENST00000456471		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000311669	ENST00000567733		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-3UTR	ENST00000456471	ENST00000311669		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000456471	ENST00000456471		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000456471	ENST00000567733		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-3UTR	ENST00000567733	ENST00000311669		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000567733	ENST00000456471		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-intron	ENST00000567733	ENST00000567733		ChiTaRS3.1			BU742597	ADPGK	chr15	73044555	+	ADPGK	chr15	73044426	-
intron-3UTR	ENST00000448526	ENST00000448526		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000448526	ENST00000244741		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000448526	ENST00000405375		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000448526	ENST00000373711		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000448526	ENST00000478800		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000244741	ENST00000448526		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000244741	ENST00000244741		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000244741	ENST00000405375		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-intron	ENST00000244741	ENST00000373711		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-intron	ENST00000244741	ENST00000478800		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000405375	ENST00000448526		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000405375	ENST00000244741		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-3UTR	ENST00000405375	ENST00000405375		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-intron	ENST00000405375	ENST00000373711		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
3UTR-intron	ENST00000405375	ENST00000478800		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000373711	ENST00000448526		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000373711	ENST00000244741		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000373711	ENST00000405375		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000373711	ENST00000373711		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000373711	ENST00000478800		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000478800	ENST00000448526		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000478800	ENST00000244741		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-3UTR	ENST00000478800	ENST00000405375		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000478800	ENST00000373711		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
intron-intron	ENST00000478800	ENST00000478800		ChiTaRS3.1			CN481397	CDKN1A	chr6	36654614	+	CDKN1A	chr6	36653723	+
Frame-shit	ENST00000366933	ENST00000366933		ChiTaRS3.1			CB243437	SPATA17	chr1	217975144	-	SPATA17	chr1	217975060	+
Frame-shit	ENST00000366933	ENST00000471021		ChiTaRS3.1			CB243437	SPATA17	chr1	217975144	-	SPATA17	chr1	217975060	+
3UTR-3CDS	ENST00000471021	ENST00000366933		ChiTaRS3.1			CB243437	SPATA17	chr1	217975144	-	SPATA17	chr1	217975060	+
3UTR-3CDS	ENST00000471021	ENST00000471021		ChiTaRS3.1			CB243437	SPATA17	chr1	217975144	-	SPATA17	chr1	217975060	+
intron-3CDS	ENST00000328908	ENST00000230449		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000328908	ENST00000448181		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000328908	ENST00000475028		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-3CDS	ENST00000397588	ENST00000230449		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000397588	ENST00000448181		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000397588	ENST00000475028		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-3CDS	ENST00000472453	ENST00000230449		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000472453	ENST00000448181		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000472453	ENST00000475028		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-3CDS	ENST00000449732	ENST00000230449		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000449732	ENST00000448181		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000449732	ENST00000475028		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-3CDS	ENST00000343762	ENST00000230449		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000343762	ENST00000448181		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-intron	ENST00000343762	ENST00000475028		ChiTaRS3.1			CN426887	CDYL	chr6	4773415	+	EXOC2	chr6	592591	-
intron-3UTR	ENST00000512994	ENST00000342944		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-intron	ENST00000512994	ENST00000339642		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000512994	ENST00000357002		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000505939	ENST00000342944		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-intron	ENST00000505939	ENST00000339642		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000505939	ENST00000357002		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000240499	ENST00000342944		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-intron	ENST00000240499	ENST00000339642		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000240499	ENST00000357002		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000579770	ENST00000342944		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-intron	ENST00000579770	ENST00000339642		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-3UTR	ENST00000579770	ENST00000357002		ChiTaRS3.1			BG403577	ZNF141	chr4	369712	-	ZNF254	chr19	24311986	+
intron-intron	ENST00000378518	ENST00000407071		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378518	ENST00000366518		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378518	ENST00000479506		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
5CDS-intron	ENST00000605895	ENST00000407071		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
5CDS-intron	ENST00000605895	ENST00000366518		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
5CDS-intron	ENST00000605895	ENST00000479506		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378513	ENST00000407071		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378513	ENST00000366518		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378513	ENST00000479506		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378512	ENST00000407071		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378512	ENST00000366518		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000378512	ENST00000479506		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000488353	ENST00000407071		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000488353	ENST00000366518		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000488353	ENST00000479506		ChiTaRS3.1			BE764077	RER1	chr1	2336877	+	KIF26B	chr1	245373971	-
intron-intron	ENST00000569256	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569256	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000569256	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000248098	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000248098	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-5UTR	ENST00000248098	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000562684	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000562684	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-5UTR	ENST00000562684	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000561516	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000561516	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000561516	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382711	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382711	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000382711	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569765	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569765	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000569765	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382710	ENST00000427522		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382710	ENST00000467148		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000382710	ENST00000479540		ChiTaRS3.1			BI061837	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BF588707	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
3UTR-3UTR	ENST00000297540	ENST00000297540		ChiTaRS3.1			AI808197	PHAX	chr5	125961633	-	PHAX	chr5	125962168	-
3UTR-intron	ENST00000297540	ENST00000514725		ChiTaRS3.1			AI808197	PHAX	chr5	125961633	-	PHAX	chr5	125962168	-
intron-3UTR	ENST00000514725	ENST00000297540		ChiTaRS3.1			AI808197	PHAX	chr5	125961633	-	PHAX	chr5	125962168	-
intron-intron	ENST00000514725	ENST00000514725		ChiTaRS3.1			AI808197	PHAX	chr5	125961633	-	PHAX	chr5	125962168	-
intron-3CDS	ENST00000336838	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000336838	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000336838	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000336838	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000336838	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000336838	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000263630	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000263630	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000263630	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000263630	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000263630	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000263630	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000436346	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000436346	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000436346	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000436346	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000436346	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000436346	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000413716	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000413716	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000413716	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000413716	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000413716	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000413716	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000422883	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000422883	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000422883	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000422883	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000422883	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000422883	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000471947	ENST00000336838		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000471947	ENST00000263630		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000471947	ENST00000436346		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-3CDS	ENST00000471947	ENST00000413716		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000471947	ENST00000422883		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
intron-intron	ENST00000471947	ENST00000471947		ChiTaRS3.1			AI873507	CCDC88A	chr2	55562077	+	CCDC88A	chr2	55561560	+
Frame-shit	ENST00000314138	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000314138	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000531978	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000531978	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000524496	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000524496	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000532359	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000532359	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000530022	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530022	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000526562	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000526562	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
Frame-shit	ENST00000530913	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
5CDS-intron	ENST00000530913	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-3CDS	ENST00000531102	ENST00000314138		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000531978		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000524496		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000532359		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000530022		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000526562		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000530913		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000531102	ENST00000531102		ChiTaRS3.1			BF828517	RPL27A	chr11	8706408	-	RPL27A	chr11	8707262	+
intron-intron	ENST00000372978	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000372978	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372978	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000494547	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000494547	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000456846	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000456846	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000372982	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000372982	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000472818	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000472818	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-3UTR	ENST00000372977	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
3UTR-intron	ENST00000372977	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000482926	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482926	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000465926	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000465926	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000372978		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000494547		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000456846		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000372982		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000472818		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3UTR	ENST00000482432	ENST00000372977		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000482926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000465926		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-intron	ENST00000482432	ENST00000482432		ChiTaRS3.1			AI969977	TAF8	chr6	42047556	-	TAF8	chr6	42048081	-
intron-3CDS	ENST00000547302	ENST00000367120		ChiTaRS3.1			AI424747	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
intron-3CDS	ENST00000547302	ENST00000537984		ChiTaRS3.1			AI424747	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
intron-intron	ENST00000547302	ENST00000463979		ChiTaRS3.1			AI424747	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
intron-5UTR	ENST00000481781	ENST00000595886		ChiTaRS3.1			BF361137	INS-IGF2	chr11	2152392	+	FENDRR	chr16	86509178	-
intron-5UTR	ENST00000397270	ENST00000595886		ChiTaRS3.1			BF361137	INS-IGF2	chr11	2152392	+	FENDRR	chr16	86509178	-
intron-intron	ENST00000274456	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000274456	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000274456	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000513374	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000513374	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000513374	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504771	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504771	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504771	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000503646	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000503646	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000503646	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504642	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504642	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000504642	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000415806	ENST00000515837		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000415806	ENST00000334888		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
intron-intron	ENST00000415806	ENST00000398979		ChiTaRS3.1			BF926967	TNFAIP8	chr5	118715826	+	TMEM216	chr11	61164920	+
Frame-shit	ENST00000239938	ENST00000239938		ChiTaRS3.1			EL595027	EGR1	chr5	137802526	-	EGR1	chr5	137803000	-
intron-intron	ENST00000401642	ENST00000314358		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000401642	ENST00000394866		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000401642	ENST00000542866		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000401642	ENST00000508386		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000388940	ENST00000314358		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000388940	ENST00000394866		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000388940	ENST00000542866		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000388940	ENST00000508386		ChiTaRS3.1			BF919717	SCFD2	chr4	54140146	+	KDM3B	chr5	137705815	-
intron-intron	ENST00000487861	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487861	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000471583	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000487270	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000488612	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000390683	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000415807		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000336824		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000416957		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000392699		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000421757		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000423424		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
intron-intron	ENST00000469165	ENST00000476794		ChiTaRS3.1			AW139957	RAD51B	chr14	68888338	+	FNDC3B	chr3	172042047	-
3UTR-intron	ENST00000324856	ENST00000392365		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
3UTR-intron	ENST00000324856	ENST00000233156		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
3UTR-intron	ENST00000324856	ENST00000409676		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
3UTR-intron	ENST00000324856	ENST00000339091		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000457599	ENST00000392365		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000457599	ENST00000233156		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000457599	ENST00000409676		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000457599	ENST00000339091		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000374152	ENST00000392365		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000374152	ENST00000233156		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000374152	ENST00000409676		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000374152	ENST00000339091		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000540690	ENST00000392365		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000540690	ENST00000233156		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000540690	ENST00000409676		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000540690	ENST00000339091		ChiTaRS3.1			CK300697	ARID1A	chr1	27108477	-	TFPI	chr2	188369030	+
intron-intron	ENST00000261866	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000261866	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000535302	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000535302	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000427534	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000427534	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000558319	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000558319	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000558253	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000558253	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000559193	ENST00000264741		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-intron	ENST00000559193	ENST00000422441		ChiTaRS3.1			BF842317	SPG11	chr15	44876087	-	ITGA9	chr3	37756466	-
intron-3CDS	ENST00000216951	ENST00000257570		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000216951	ENST00000339275		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000257570		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000541098	ENST00000339275		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000257570		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3CDS	ENST00000451957	ENST00000339275		ChiTaRS3.1			AW848757	GSS	chr20	33516533	+	OASL	chr12	121461927	-
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H21087	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-5UTR	ENST00000484910	ENST00000484910		ChiTaRS3.1			BX110207	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-3UTR	ENST00000484910	ENST00000367002		ChiTaRS3.1			BX110207	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-5UTR	ENST00000367002	ENST00000484910		ChiTaRS3.1			BX110207	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-3UTR	ENST00000367002	ENST00000367002		ChiTaRS3.1			BX110207	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-3UTR	ENST00000261778	ENST00000511206		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-3UTR	ENST00000261778	ENST00000287936		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-3UTR	ENST00000261778	ENST00000343975		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-3UTR	ENST00000561931	ENST00000511206		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-3UTR	ENST00000561931	ENST00000287936		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-3UTR	ENST00000561931	ENST00000343975		ChiTaRS3.1			BQ316867	TANGO6	chr16	69091769	-	HMGCR	chr5	74656333	-
intron-intron	ENST00000261600	ENST00000261600		ChiTaRS3.1			BF088997	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000261600	ENST00000582313		ChiTaRS3.1			BF088997	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000582313	ENST00000261600		ChiTaRS3.1			BF088997	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000582313	ENST00000582313		ChiTaRS3.1			BF088997	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000438423	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000438423	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000267811	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000452095	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000333725	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000557843	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000560764	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000543579	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000537840	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000343827	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559710	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000438423		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000267811		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000452095		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000333725		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000557843		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000560764		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000543579		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000537840		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000343827		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000559710		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-intron	ENST00000559703	ENST00000559703		ChiTaRS3.1			DA572187	TCF12	chr15	57514089	-	TCF12	chr15	57514536	-
intron-3CDS	ENST00000410053	ENST00000437600		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000292538		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000393824		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000547394		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000360264		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000425244		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000292535		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000549414		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000556210		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000550008		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000410053	ENST00000546411		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3UTR	ENST00000410053	ENST00000560541		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000437600		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000292538		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000393824		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000547394		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000360264		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000425244		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000292535		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000549414		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000556210		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000550008		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3CDS	ENST00000295749	ENST00000546411		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-3UTR	ENST00000295749	ENST00000560541		ChiTaRS3.1			M85367	CWC22	chr2	180823162	+	CUX1	chr7	101801840	+
intron-intron	ENST00000264914	ENST00000275884		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000264914	ENST00000537639		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000264914	ENST00000496613		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000264914	ENST00000492720		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000396151	ENST00000275884		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000396151	ENST00000537639		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000396151	ENST00000496613		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000396151	ENST00000492720		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000565165	ENST00000275884		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000565165	ENST00000537639		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000565165	ENST00000496613		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000565165	ENST00000492720		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000521800	ENST00000275884		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000521800	ENST00000537639		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000521800	ENST00000496613		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000521800	ENST00000492720		ChiTaRS3.1			AW236827	ARSB	chr5	78073407	+	DENND2A	chr7	140293273	+
intron-intron	ENST00000316737	ENST00000316737		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000316737	ENST00000592955		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000316737	ENST00000590327		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000592955	ENST00000316737		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000592955	ENST00000592955		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000592955	ENST00000590327		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000590327	ENST00000316737		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000590327	ENST00000592955		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-intron	ENST00000590327	ENST00000590327		ChiTaRS3.1			BG982427	TSPAN16	chr19	11435280	+	TSPAN16	chr19	11434546	+
intron-3CDS	ENST00000319622	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000319622	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000565184	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000565184	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000389093	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000389093	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000335181	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000335181	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000568883	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000568883	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000449901	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000449901	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000565154	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000565154	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000568459	ENST00000523430		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3CDS	ENST00000568459	ENST00000265896		ChiTaRS3.1			BF798347	PKM	chr15	72523543	+	SQLE	chr8	126023804	+
intron-3UTR	ENST00000320895	ENST00000217909		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-intron	ENST00000320895	ENST00000336249		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000320895	ENST00000488158		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000507807	ENST00000217909		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-intron	ENST00000507807	ENST00000336249		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000507807	ENST00000488158		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000320927	ENST00000217909		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-intron	ENST00000320927	ENST00000336249		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000320927	ENST00000488158		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000506641	ENST00000217909		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-intron	ENST00000506641	ENST00000336249		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000506641	ENST00000488158		ChiTaRS3.1			BF351017	CLPTM1L	chr5	1323059	+	SLC25A43	chrX	118588194	+
intron-3UTR	ENST00000607772	ENST00000607772		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000607772	ENST00000479339		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000607772	ENST00000433165		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-3UTR	ENST00000479339	ENST00000607772		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000479339	ENST00000479339		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000479339	ENST00000433165		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-3UTR	ENST00000433165	ENST00000607772		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000433165	ENST00000479339		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
intron-intron	ENST00000433165	ENST00000433165		ChiTaRS3.1			BX092237	CNKSR3	chr6	154719115	+	CNKSR3	chr6	154718677	-
5CDS-3UTR	ENST00000250003	ENST00000250003		ChiTaRS3.1			BE298077	MYOD1	chr11	17742975	-	MYOD1	chr11	17743068	+
intron-intron	ENST00000507936	ENST00000446856		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000264758		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000398125		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000513328		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000503455		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000355842		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000398123		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000398129		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000507936	ENST00000538860		ChiTaRS3.1			BX510207	C5orf17	chr5	24145639	-	ADD1	chr4	2908000	+
intron-intron	ENST00000377795	ENST00000406775		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000377795	ENST00000342771		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000377795	ENST00000403018		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000377795	ENST00000489774		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000353334	ENST00000406775		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000353334	ENST00000342771		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000353334	ENST00000403018		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000353334	ENST00000489774		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000524315	ENST00000406775		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000524315	ENST00000342771		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000524315	ENST00000403018		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000524315	ENST00000489774		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000009530	ENST00000406775		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000009530	ENST00000342771		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000009530	ENST00000403018		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000009530	ENST00000489774		ChiTaRS3.1			BF840517	CD74	chr5	149781410	-	AUTS2	chr7	69285733	-
intron-intron	ENST00000443455	ENST00000368226		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000368227		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000532331		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000368213		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000368210		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000368215		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000368207		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000524481		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
intron-intron	ENST00000443455	ENST00000525459		ChiTaRS3.1			BF750397	ANKRD36B	chr2	98152810	-	PTPRK	chr6	128294150	+
In-frame	ENST00000278795	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000278795	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000278795	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000278795	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000278795	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000278795	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000305958	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000305958	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000305958	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000305958	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000305958	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000305958	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000339123	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000339123	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000339123	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000339123	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000339123	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000339123	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-3CDS	ENST00000484515	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-3CDS	ENST00000484515	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-3CDS	ENST00000484515	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-intron	ENST00000484515	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-intron	ENST00000484515	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
intron-intron	ENST00000484515	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000346595	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000346595	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000346595	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000346595	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000346595	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000346595	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000379460	ENST00000278795		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000379460	ENST00000305958		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
In-frame	ENST00000379460	ENST00000339123		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000379460	ENST00000484515		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000379460	ENST00000346595		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
5CDS-intron	ENST00000379460	ENST00000379460		ChiTaRS3.1			BF769727	SMOX	chr20	4167994	+	SMOX	chr20	4164277	-
3UTR-3UTR	ENST00000260197	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000260197	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000260197	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000260197	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000260197	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000260197	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-3UTR	ENST00000532451	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532451	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532451	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532451	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532451	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532451	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-3UTR	ENST00000525532	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000525532	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000525532	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000525532	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000525532	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000525532	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-3UTR	ENST00000532694	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532694	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532694	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532694	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532694	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000532694	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-3UTR	ENST00000534286	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000534286	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000534286	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000534286	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000534286	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000534286	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-3UTR	ENST00000527934	ENST00000260197		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000527934	ENST00000532451		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000527934	ENST00000525532		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000527934	ENST00000532694		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000527934	ENST00000534286		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
intron-intron	ENST00000527934	ENST00000527934		ChiTaRS3.1			BE091247	SORL1	chr11	121503621	-	SORL1	chr11	121502981	+
3UTR-intron	ENST00000479389	ENST00000479389		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
3UTR-intron	ENST00000479389	ENST00000259808		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
3UTR-intron	ENST00000479389	ENST00000541791		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
3UTR-intron	ENST00000479389	ENST00000380409		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000259808	ENST00000479389		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000259808	ENST00000259808		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000259808	ENST00000541791		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000259808	ENST00000380409		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000541791	ENST00000479389		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000541791	ENST00000259808		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000541791	ENST00000541791		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000541791	ENST00000380409		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000380409	ENST00000479389		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000380409	ENST00000259808		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000380409	ENST00000541791		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
5CDS-intron	ENST00000380409	ENST00000380409		ChiTaRS3.1			AA143087	RIPK1	chr6	3106130	-	RIPK1	chr6	3111034	+
3UTR-3UTR	ENST00000280557	ENST00000296658		ChiTaRS3.1			BE813357	DENR	chr12	123254339	-	CMBL	chr5	10279956	+
3UTR-intron	ENST00000280557	ENST00000510532		ChiTaRS3.1			BE813357	DENR	chr12	123254339	-	CMBL	chr5	10279956	+
3UTR-3UTR	ENST00000455982	ENST00000296658		ChiTaRS3.1			BE813357	DENR	chr12	123254339	-	CMBL	chr5	10279956	+
3UTR-intron	ENST00000455982	ENST00000510532		ChiTaRS3.1			BE813357	DENR	chr12	123254339	-	CMBL	chr5	10279956	+
In-frame	ENST00000007708	ENST00000007708		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
In-frame	ENST00000007708	ENST00000503176		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
5CDS-intron	ENST00000007708	ENST00000511026		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
In-frame	ENST00000503176	ENST00000007708		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
In-frame	ENST00000503176	ENST00000503176		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
5CDS-intron	ENST00000503176	ENST00000511026		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
intron-3CDS	ENST00000511026	ENST00000007708		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
intron-3CDS	ENST00000511026	ENST00000503176		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
intron-intron	ENST00000511026	ENST00000511026		ChiTaRS3.1			R76327	PDK2	chr17	48186053	+	PDK2	chr17	48185993	-
5CDS-intron	ENST00000354618	ENST00000325722		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
5CDS-intron	ENST00000354618	ENST00000373266		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
5CDS-intron	ENST00000354618	ENST00000485551		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
5CDS-intron	ENST00000469141	ENST00000325722		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
5CDS-intron	ENST00000469141	ENST00000373266		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
5CDS-intron	ENST00000469141	ENST00000485551		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
intron-intron	ENST00000466743	ENST00000325722		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
intron-intron	ENST00000466743	ENST00000373266		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
intron-intron	ENST00000466743	ENST00000485551		ChiTaRS3.1			BQ332167	THRAP3	chr1	36767216	+	KIAA0319L	chr1	35902729	-
intron-intron	ENST00000395925	ENST00000395925		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000395925	ENST00000479210		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000395925	ENST00000437480		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000479210	ENST00000395925		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000479210	ENST00000479210		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000479210	ENST00000437480		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000437480	ENST00000395925		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000437480	ENST00000479210		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
intron-intron	ENST00000437480	ENST00000437480		ChiTaRS3.1			DW437787	GLI3	chr7	42034993	-	GLI3	chr7	42035984	-
3UTR-3CDS	ENST00000157812	ENST00000157812		ChiTaRS3.1			BU674697	PSMC4	chr19	40487233	-	PSMC4	chr19	40486343	+
3UTR-3CDS	ENST00000157812	ENST00000455878		ChiTaRS3.1			BU674697	PSMC4	chr19	40487233	-	PSMC4	chr19	40486343	+
3UTR-3CDS	ENST00000455878	ENST00000157812		ChiTaRS3.1			BU674697	PSMC4	chr19	40487233	-	PSMC4	chr19	40486343	+
3UTR-3CDS	ENST00000455878	ENST00000455878		ChiTaRS3.1			BU674697	PSMC4	chr19	40487233	-	PSMC4	chr19	40486343	+
intron-intron	ENST00000383737	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000383737	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000383737	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000383737	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000383737	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000383737	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000395734	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000426837	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000360240	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000439356	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000264724	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000420772	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000441748	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000462206	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000339514		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000392318		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000304164		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000392316		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000439065		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-intron	ENST00000434267	ENST00000496992		ChiTaRS3.1			AI251787	MAP4	chr3	47893160	+	MYO1B	chr2	192265507	-
intron-3CDS	ENST00000465198	ENST00000273450		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000465198	ENST00000472186		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000465198	ENST00000452905		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000465198	ENST00000393434		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000465198	ENST00000393431		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-intron	ENST00000465198	ENST00000413612		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000465198	ENST00000455064		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-3CDS	ENST00000238738	ENST00000273450		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000238738	ENST00000472186		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000238738	ENST00000452905		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000238738	ENST00000393434		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000238738	ENST00000393431		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-intron	ENST00000238738	ENST00000413612		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000238738	ENST00000455064		ChiTaRS3.1			BX500047	RHOQ	chr2	46806728	-	ALDH1L1	chr3	125879848	-
intron-5UTR	ENST00000399497	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000399497	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000399497	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000399497	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000399497	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000399497	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000286733	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000286733	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000286733	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000286733	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000286733	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000286733	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000511606	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000511606	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000511606	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000511606	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000511606	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000511606	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507956	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507956	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507956	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507956	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507956	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507956	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000505594	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000505594	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000505594	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000505594	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000505594	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000505594	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507187	ENST00000399497		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507187	ENST00000286733		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507187	ENST00000511606		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507187	ENST00000507956		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000507187	ENST00000505594		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-5UTR	ENST00000507187	ENST00000507187		ChiTaRS3.1			AK024677	NAAA	chr4	76838070	-	NAAA	chr4	76862128	-
intron-intron	ENST00000296161	ENST00000296161		ChiTaRS3.1			BF916447	DTX3L	chr3	122289867	-	DTX3L	chr3	122289941	+
intron-intron	ENST00000296161	ENST00000383661		ChiTaRS3.1			BF916447	DTX3L	chr3	122289867	-	DTX3L	chr3	122289941	+
intron-intron	ENST00000383661	ENST00000296161		ChiTaRS3.1			BF916447	DTX3L	chr3	122289867	-	DTX3L	chr3	122289941	+
intron-intron	ENST00000383661	ENST00000383661		ChiTaRS3.1			BF916447	DTX3L	chr3	122289867	-	DTX3L	chr3	122289941	+
5UTR-3CDS	ENST00000570101	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000570101	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000570101	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000219320	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000219320	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000219320	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564100	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564100	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000564100	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564010	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564010	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000564010	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000566953	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000566953	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000566953	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564391	ENST00000245206		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-3CDS	ENST00000564391	ENST00000434819		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
5UTR-5UTR	ENST00000564391	ENST00000564400		ChiTaRS3.1			DA873777	SLC38A7	chr16	58717859	-	GOT2	chr16	58753162	-
intron-intron	ENST00000359263	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000359263	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000358334	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371501	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371502	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371489	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000485212	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000359263		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000358334		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371501		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371502		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371489		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000485212		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
intron-intron	ENST00000371488	ENST00000371488		ChiTaRS3.1			AA664967	MYOF	chr10	95070341	-	MYOF	chr10	95072776	+
3UTR-3CDS	ENST00000336314	ENST00000328252		ChiTaRS3.1			U28727	LARP1	chr5	154194517	-	PAPPA	chr9	118916083	+
3UTR-intron	ENST00000336314	ENST00000534838		ChiTaRS3.1			U28727	LARP1	chr5	154194517	-	PAPPA	chr9	118916083	+
3UTR-intron	ENST00000336314	ENST00000483254		ChiTaRS3.1			U28727	LARP1	chr5	154194517	-	PAPPA	chr9	118916083	+
intron-3CDS	ENST00000260643	ENST00000260643		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000260643	ENST00000406567		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000260643	ENST00000416802		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000406567	ENST00000260643		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000406567	ENST00000406567		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000406567	ENST00000416802		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000416802	ENST00000260643		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-3CDS	ENST00000416802	ENST00000406567		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
intron-intron	ENST00000416802	ENST00000416802		ChiTaRS3.1			AA468217	PREB	chr2	27356056	-	PREB	chr2	27355503	+
In-frame	ENST00000268171	ENST00000268171		ChiTaRS3.1			BG004887	FURIN	chr15	91419768	-	FURIN	chr15	91419119	+
intron-intron	ENST00000369784	ENST00000355630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000369784	ENST00000396617		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000369784	ENST00000402042		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000369784	ENST00000466278		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000369784	ENST00000407029		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000369784	ENST00000402630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000355630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000396617		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000402042		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000466278		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000407029		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000487146	ENST00000402630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000355630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000396617		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000402042		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000466278		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000407029		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
intron-intron	ENST00000602849	ENST00000402630		ChiTaRS3.1			AJ312237	RBM15	chr1	110887790	+	MKL1	chr22	40831963	-
5CDS-intron	ENST00000434316	ENST00000582151		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-3UTR	ENST00000434316	ENST00000250124		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-3UTR	ENST00000434316	ENST00000396501		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-intron	ENST00000434316	ENST00000423172		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-intron	ENST00000375391	ENST00000582151		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-3UTR	ENST00000375391	ENST00000250124		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-3UTR	ENST00000375391	ENST00000396501		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-intron	ENST00000375391	ENST00000423172		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-intron	ENST00000474393	ENST00000582151		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-3UTR	ENST00000474393	ENST00000250124		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-3UTR	ENST00000474393	ENST00000396501		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-intron	ENST00000474393	ENST00000423172		ChiTaRS3.1			BF746417	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-3CDS	ENST00000239223	ENST00000239223		ChiTaRS3.1			BM811197	DUSP1	chr5	172196775	+	DUSP1	chr5	172198195	-
intron-intron	ENST00000275605	ENST00000245323		ChiTaRS3.1			BE766917	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
intron-intron	ENST00000395471	ENST00000245323		ChiTaRS3.1			BE766917	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
intron-intron	ENST00000459834	ENST00000245323		ChiTaRS3.1			BE766917	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
5CDS-3UTR	ENST00000339566	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000339566	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000339566	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000339566	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000339566	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000339566	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000409707	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000409707	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000409707	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000409707	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000409707	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000409707	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394073	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000394073	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394073	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394073	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000394073	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394073	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394070	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000394070	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394070	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394070	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-intron	ENST00000394070	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
5CDS-3UTR	ENST00000394070	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-3UTR	ENST00000536064	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-intron	ENST00000536064	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-3UTR	ENST00000536064	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-3UTR	ENST00000536064	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-intron	ENST00000536064	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-3UTR	ENST00000536064	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-3UTR	ENST00000486458	ENST00000339566		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-intron	ENST00000486458	ENST00000409707		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-3UTR	ENST00000486458	ENST00000394073		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-3UTR	ENST00000486458	ENST00000394070		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-intron	ENST00000486458	ENST00000536064		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
3UTR-3UTR	ENST00000486458	ENST00000486458		ChiTaRS3.1			BQ379887	STAMBP	chr2	74087196	-	STAMBP	chr2	74089554	-
intron-intron	ENST00000377809	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377809	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000402010	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000413835	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000377810	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000315032	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000508192	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000361128	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000350490	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000502399	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000509502	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000513765	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000408948	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000377809		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000402010		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000413835		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000377810		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000315032		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000508192		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000361128		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000350490		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000502399		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000509502		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000513765		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000408948		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-intron	ENST00000425897	ENST00000425897		ChiTaRS3.1			BE090027	MARK2	chr11	63635746	-	MARK2	chr11	63636393	-
intron-3UTR	ENST00000409003	ENST00000258418		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000409003	ENST00000410084		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000409003	ENST00000409788		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000409003	ENST00000484398		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-3UTR	ENST00000314727	ENST00000258418		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000314727	ENST00000410084		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000314727	ENST00000409788		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000314727	ENST00000484398		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-3UTR	ENST00000527515	ENST00000258418		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000527515	ENST00000410084		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000527515	ENST00000409788		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-intron	ENST00000527515	ENST00000484398		ChiTaRS3.1			AA235967	SAMD12	chr8	119372646	-	CAB39	chr2	231684856	-
intron-3CDS	ENST00000264870	ENST00000264870		ChiTaRS3.1			W26167	F13A1	chr6	6197522	+	F13A1	chr6	6175102	-
3UTR-intron	ENST00000389501	ENST00000498485		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
3UTR-intron	ENST00000389501	ENST00000259457		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
3UTR-intron	ENST00000389501	ENST00000536392		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
intron-intron	ENST00000474652	ENST00000498485		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
intron-intron	ENST00000474652	ENST00000259457		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
intron-intron	ENST00000474652	ENST00000536392		ChiTaRS3.1			AI638157	SMYD5	chr2	73454162	-	PSMB7	chr9	127150948	+
intron-intron	ENST00000580197	ENST00000394789		ChiTaRS3.1			BE464457	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-intron	ENST00000580197	ENST00000296422		ChiTaRS3.1			BE464457	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-intron	ENST00000580197	ENST00000512651		ChiTaRS3.1			BE464457	LINC00668	chr18	6925664	+	SLC9B1	chr4	103936016	+
intron-3CDS	ENST00000308624	ENST00000336838		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000308624	ENST00000263630		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000308624	ENST00000436346		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000308624	ENST00000413716		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000308624	ENST00000422883		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000308624	ENST00000471947		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000407292	ENST00000336838		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000407292	ENST00000263630		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000407292	ENST00000436346		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000407292	ENST00000413716		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000407292	ENST00000422883		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000407292	ENST00000471947		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000467759	ENST00000336838		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000467759	ENST00000263630		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000467759	ENST00000436346		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000467759	ENST00000413716		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000467759	ENST00000422883		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-intron	ENST00000467759	ENST00000471947		ChiTaRS3.1			BX493397	SNTG2	chr2	1352654	-	CCDC88A	chr2	55566661	-
intron-3CDS	ENST00000368069	ENST00000368069		ChiTaRS3.1			AA470927	COPA	chr1	160302298	-	COPA	chr1	160295379	+
intron-3CDS	ENST00000368069	ENST00000241704		ChiTaRS3.1			AA470927	COPA	chr1	160302298	-	COPA	chr1	160295379	+
intron-3CDS	ENST00000241704	ENST00000368069		ChiTaRS3.1			AA470927	COPA	chr1	160302298	-	COPA	chr1	160295379	+
intron-3CDS	ENST00000241704	ENST00000241704		ChiTaRS3.1			AA470927	COPA	chr1	160302298	-	COPA	chr1	160295379	+
intron-3UTR	ENST00000355653	ENST00000355653		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000355653	ENST00000587173		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000355653	ENST00000420567		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-3UTR	ENST00000587173	ENST00000355653		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000587173	ENST00000587173		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000587173	ENST00000420567		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-3UTR	ENST00000420567	ENST00000355653		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000420567	ENST00000587173		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
intron-intron	ENST00000420567	ENST00000420567		ChiTaRS3.1			BG003837	VAT1	chr17	41166779	-	VAT1	chr17	41167824	-
5CDS-3UTR	ENST00000318522	ENST00000318522		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000318522	ENST00000402711		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000318522	ENST00000482660		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000318522	ENST00000401738		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000318522	ENST00000453191		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-3UTR	ENST00000402711	ENST00000318522		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000402711	ENST00000402711		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000402711	ENST00000482660		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000402711	ENST00000401738		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000402711	ENST00000453191		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
3UTR-3UTR	ENST00000482660	ENST00000318522		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
3UTR-intron	ENST00000482660	ENST00000402711		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
3UTR-intron	ENST00000482660	ENST00000482660		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
3UTR-intron	ENST00000482660	ENST00000401738		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
3UTR-intron	ENST00000482660	ENST00000453191		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-3UTR	ENST00000401738	ENST00000318522		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000401738	ENST00000402711		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000401738	ENST00000482660		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000401738	ENST00000401738		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
5CDS-intron	ENST00000401738	ENST00000453191		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-3UTR	ENST00000453191	ENST00000318522		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-intron	ENST00000453191	ENST00000402711		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-intron	ENST00000453191	ENST00000482660		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-intron	ENST00000453191	ENST00000401738		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-intron	ENST00000453191	ENST00000453191		ChiTaRS3.1			AU155217	EML4	chr2	42396755	-	EML4	chr2	42558021	-
intron-5UTR	ENST00000418658	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000397461	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000427331	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000358480	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000397459	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000448906	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-5UTR	ENST00000475817	ENST00000464767		ChiTaRS3.1			BG928647	CNTN4	chr3	2482127	+	LINC00341	chr14	95873974	-
intron-intron	ENST00000342362	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000342362	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000382002	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000231423	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000513753	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000397391	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000348262	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000542609	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000310101	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000511486	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000342362		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000382002		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000231423		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000513753		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000397391		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000348262		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000542609		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000310101		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000511486		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-intron	ENST00000509934	ENST00000509934		ChiTaRS3.1			CV407157	PRLR	chr5	35173496	+	PRLR	chr5	35173555	-
intron-3CDS	ENST00000433529	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000433529	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000433529	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000415783	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000415783	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000415783	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000282574	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000282574	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000282574	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000445587	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000445587	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000445587	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000482876	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000482876	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000482876	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000416149	ENST00000285667		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-3CDS	ENST00000416149	ENST00000544452		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000416149	ENST00000478035		ChiTaRS3.1			T06637	TIA1	chr2	70444115	+	HSPA13	chr21	15746130	+
intron-intron	ENST00000390548	ENST00000566780		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000406884		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000539474		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000402655		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000408984		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000355860		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000565791		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
intron-intron	ENST00000390548	ENST00000569818		ChiTaRS3.1			BF171297	IGHG1	chr14	106329408	-	WWOX	chr16	79030097	+
3UTR-3UTR	ENST00000356948	ENST00000534336		ChiTaRS3.1			AW628767	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000350092	ENST00000534336		ChiTaRS3.1			AW628767	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000349038	ENST00000534336		ChiTaRS3.1			AW628767	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000394601	ENST00000534336		ChiTaRS3.1			AW628767	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
intron-3UTR	ENST00000361445	ENST00000395472		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000361445	ENST00000555846		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000361445	ENST00000553735		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-3UTR	ENST00000361445	ENST00000339298		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-3UTR	ENST00000376838	ENST00000395472		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000376838	ENST00000555846		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000376838	ENST00000553735		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-3UTR	ENST00000376838	ENST00000339298		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-3UTR	ENST00000495435	ENST00000395472		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000495435	ENST00000555846		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-intron	ENST00000495435	ENST00000553735		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
intron-3UTR	ENST00000495435	ENST00000339298		ChiTaRS3.1			BE380007	MTOR	chr1	11184403	-	SOCS4	chr14	55514896	+
Frame-shit	ENST00000401722	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000401722	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000401722	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000401722	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000401722	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000401722	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000401722	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000401722	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000401722	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000228318	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000228318	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000228318	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000228318	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000228318	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000228318	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000228318	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000228318	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000228318	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000188376	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000188376	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000188376	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000188376	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000188376	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000188376	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000188376	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000188376	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000188376	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000551917	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000551917	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000551917	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000551917	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000551917	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000551917	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000551917	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000551917	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000551917	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000552981	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000552981	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000552981	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000552981	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000552981	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000552981	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000552981	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000552981	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000552981	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000551265	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000551265	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000551265	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000551265	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000551265	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000551265	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000551265	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000551265	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000551265	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000547534	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000547534	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000547534	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000547534	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3CDS	ENST00000547534	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000547534	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000547534	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000547534	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-intron	ENST00000547534	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000549338	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000549338	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000549338	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000549338	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000549338	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000549338	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000549338	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000549338	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000549338	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000548847	ENST00000401722		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000548847	ENST00000228318		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
In-frame	ENST00000548847	ENST00000188376		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000548847	ENST00000551917		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
Frame-shit	ENST00000548847	ENST00000552981		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000548847	ENST00000551265		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000548847	ENST00000547534		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000548847	ENST00000549338		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
5CDS-intron	ENST00000548847	ENST00000548847		ChiTaRS3.1			CF126627	SLC25A3	chr12	98992325	-	SLC25A3	chr12	98995203	+
intron-3UTR	ENST00000383737	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000383737	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000383737	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000383737	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000395734	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000395734	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000395734	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000395734	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000426837	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000426837	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000426837	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000426837	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000360240	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000360240	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000360240	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000360240	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000439356	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000439356	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000439356	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000439356	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000264724	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000264724	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000264724	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000264724	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000420772	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000420772	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000420772	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000420772	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000441748	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000441748	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000441748	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000441748	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000462206	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000462206	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000462206	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000462206	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000434267	ENST00000383737		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000434267	ENST00000395734		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000426837		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000360240		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000439356		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-3UTR	ENST00000434267	ENST00000264724		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000420772		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000441748		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000462206		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-intron	ENST00000434267	ENST00000434267		ChiTaRS3.1			BM996847	MAP4	chr3	47892515	+	MAP4	chr3	47892588	-
intron-5UTR	ENST00000342160	ENST00000282050		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000593152		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000590665		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000398752		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000342160	ENST00000591267		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000282050		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000593152		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000590665		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000398752		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000262854	ENST00000591267		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000282050		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000593152		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000590665		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000398752		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000474288	ENST00000591267		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000282050		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000593152		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000590665		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000398752		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
intron-5UTR	ENST00000218328	ENST00000591267		ChiTaRS3.1			BC001637	HUWE1	chrX	53587310	-	ATP5A1	chr18	43678250	-
3UTR-3UTR	ENST00000327367	ENST00000327367		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000327367	ENST00000559092		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000327367	ENST00000540846		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000327367	ENST00000439724		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000327367	ENST00000537194		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-3UTR	ENST00000559092	ENST00000327367		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-intron	ENST00000559092	ENST00000559092		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-intron	ENST00000559092	ENST00000540846		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-3UTR	ENST00000559092	ENST00000439724		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-intron	ENST00000559092	ENST00000537194		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000540846	ENST00000327367		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000540846	ENST00000559092		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000540846	ENST00000540846		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000540846	ENST00000439724		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000540846	ENST00000537194		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000439724	ENST00000327367		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000439724	ENST00000559092		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000439724	ENST00000540846		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000439724	ENST00000439724		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000439724	ENST00000537194		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000537194	ENST00000327367		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000537194	ENST00000559092		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000537194	ENST00000540846		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-3UTR	ENST00000537194	ENST00000439724		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
3UTR-intron	ENST00000537194	ENST00000537194		ChiTaRS3.1			BF333017	SMAD3	chr15	67483047	+	SMAD3	chr15	67483164	-
intron-intron	ENST00000311380	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000311380	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000311380	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000311380	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000311380	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000311380	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375250	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000492028	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000344936	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000396144	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000311380		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000375250		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000492028		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000344936		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000396144		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
intron-intron	ENST00000375245	ENST00000375245		ChiTaRS3.1			BF329227	ARHGAP12	chr10	32199492	+	ARHGAP12	chr10	32197098	+
In-frame	ENST00000263801	ENST00000263801		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000263801	ENST00000382039		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000263801	ENST00000382044		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000263801	ENST00000450115		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5CDS-intron	ENST00000263801	ENST00000605155		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382039	ENST00000263801		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382039	ENST00000382039		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382039	ENST00000382044		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382039	ENST00000450115		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5CDS-intron	ENST00000382039	ENST00000605155		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382044	ENST00000263801		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382044	ENST00000382039		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382044	ENST00000382044		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000382044	ENST00000450115		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5CDS-intron	ENST00000382044	ENST00000605155		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000450115	ENST00000263801		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000450115	ENST00000382039		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000450115	ENST00000382044		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
In-frame	ENST00000450115	ENST00000450115		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5CDS-intron	ENST00000450115	ENST00000605155		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5UTR-3CDS	ENST00000605155	ENST00000263801		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5UTR-3CDS	ENST00000605155	ENST00000382039		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5UTR-3CDS	ENST00000605155	ENST00000382044		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5UTR-3CDS	ENST00000605155	ENST00000450115		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
5UTR-intron	ENST00000605155	ENST00000605155		ChiTaRS3.1			BF357747	TP53BP1	chr15	43748090	-	TP53BP1	chr15	43762265	-
intron-intron	ENST00000328908	ENST00000328908		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000328908	ENST00000397588		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000328908	ENST00000449732		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000328908	ENST00000343762		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000397588	ENST00000328908		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000397588	ENST00000397588		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000397588	ENST00000449732		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000397588	ENST00000343762		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000472453	ENST00000328908		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000472453	ENST00000397588		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000472453	ENST00000449732		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000472453	ENST00000343762		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000449732	ENST00000328908		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000449732	ENST00000397588		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000449732	ENST00000449732		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000449732	ENST00000343762		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000343762	ENST00000328908		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000343762	ENST00000397588		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000343762	ENST00000449732		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000343762	ENST00000343762		ChiTaRS3.1			BQ368327	CDYL	chr6	4891945	-	CDYL	chr6	4892615	-
intron-intron	ENST00000319359	ENST00000374495		ChiTaRS3.1			BQ637477	ELL3	chr15	44090186	-	ARR3	chrX	69498087	+
intron-intron	ENST00000319359	ENST00000307959		ChiTaRS3.1			BQ637477	ELL3	chr15	44090186	-	ARR3	chrX	69498087	+
intron-intron	ENST00000497465	ENST00000374495		ChiTaRS3.1			BQ637477	ELL3	chr15	44090186	-	ARR3	chrX	69498087	+
intron-intron	ENST00000497465	ENST00000307959		ChiTaRS3.1			BQ637477	ELL3	chr15	44090186	-	ARR3	chrX	69498087	+
intron-5UTR	ENST00000391875	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000391875	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000391875	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000391875	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000391875	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000281701	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000281701	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000281701	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000281701	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000281701	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000469075	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000469075	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000469075	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000469075	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000469075	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000482491	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000482491	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000482491	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000482491	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000482491	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000340871	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000340871	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000340871	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000340871	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000340871	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000361463	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000361463	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000361463	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000361463	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000361463	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000468673	ENST00000529163		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-5UTR	ENST00000468673	ENST00000394920		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000468673	ENST00000527914		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000468673	ENST00000262584		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000468673	ENST00000528957		ChiTaRS3.1			BQ681327	NVL	chr1	224514150	-	RPL8	chr8	146016811	-
intron-intron	ENST00000440693	ENST00000443185		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-intron	ENST00000440693	ENST00000524431		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-intron	ENST00000409663	ENST00000443185		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-intron	ENST00000409663	ENST00000524431		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-intron	ENST00000409959	ENST00000443185		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-intron	ENST00000409959	ENST00000524431		ChiTaRS3.1			AV732097	KIAA0922	chr4	154433563	+	ZNF516	chr18	74075162	+
intron-3UTR	ENST00000373840	ENST00000373840		ChiTaRS3.1			AA129347	RAB14	chr9	123942949	+	RAB14	chr9	123942837	-
5CDS-3UTR	ENST00000397677	ENST00000397677		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
5CDS-3UTR	ENST00000397677	ENST00000313219		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
5CDS-intron	ENST00000397677	ENST00000520102		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
5CDS-3UTR	ENST00000313219	ENST00000397677		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
5CDS-3UTR	ENST00000313219	ENST00000313219		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
5CDS-intron	ENST00000313219	ENST00000520102		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
intron-3UTR	ENST00000520102	ENST00000397677		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
intron-3UTR	ENST00000520102	ENST00000313219		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
intron-intron	ENST00000520102	ENST00000520102		ChiTaRS3.1			W26547	CHMP7	chr8	23106741	-	CHMP7	chr8	23118688	+
intron-3UTR	ENST00000520468	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000297564	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000520271	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000517682	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000524245	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000522940	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000518171	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000523016	ENST00000268171		ChiTaRS3.1			R59927	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3CDS	ENST00000441044	ENST00000373586		ChiTaRS3.1			BC015407	MTMR9LP	chr1	32697345	-	EIF3I	chr1	32694098	+
intron-3UTR	ENST00000441044	ENST00000471486		ChiTaRS3.1			BC015407	MTMR9LP	chr1	32697345	-	EIF3I	chr1	32694098	+
intron-intron	ENST00000397510	ENST00000397510		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397510	ENST00000608174		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397510	ENST00000397512		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397510	ENST00000528024		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000608174	ENST00000397510		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000608174	ENST00000608174		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000608174	ENST00000397512		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000608174	ENST00000528024		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397512	ENST00000397510		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397512	ENST00000608174		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397512	ENST00000397512		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000397512	ENST00000528024		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000528024	ENST00000397510		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000528024	ENST00000608174		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000528024	ENST00000397512		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
intron-intron	ENST00000528024	ENST00000528024		ChiTaRS3.1			CV573317	TMEM80	chr11	701188	+	TMEM80	chr11	697221	+
5CDS-3UTR	ENST00000322019	ENST00000589123		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000322019	ENST00000346156		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000322019	ENST00000395111		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000322019	ENST00000586919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000322019	ENST00000341919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000322019	ENST00000590282		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000322019	ENST00000443272		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000322019	ENST00000588839		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000379386	ENST00000589123		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000379386	ENST00000346156		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000379386	ENST00000395111		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000379386	ENST00000586919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000379386	ENST00000341919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000379386	ENST00000590282		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000379386	ENST00000443272		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000379386	ENST00000588839		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-3UTR	ENST00000379390	ENST00000589123		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-3UTR	ENST00000379390	ENST00000346156		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-3UTR	ENST00000379390	ENST00000395111		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-intron	ENST00000379390	ENST00000586919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-intron	ENST00000379390	ENST00000341919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-intron	ENST00000379390	ENST00000590282		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-intron	ENST00000379390	ENST00000443272		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
3UTR-intron	ENST00000379390	ENST00000588839		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000565774	ENST00000589123		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000565774	ENST00000346156		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-3UTR	ENST00000565774	ENST00000395111		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000565774	ENST00000586919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000565774	ENST00000341919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000565774	ENST00000590282		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000565774	ENST00000443272		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
5CDS-intron	ENST00000565774	ENST00000588839		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-3UTR	ENST00000564988	ENST00000589123		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-3UTR	ENST00000564988	ENST00000346156		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-3UTR	ENST00000564988	ENST00000395111		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000564988	ENST00000586919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000564988	ENST00000341919		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000564988	ENST00000590282		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000564988	ENST00000443272		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000564988	ENST00000588839		ChiTaRS3.1			AW204067	TM6SF1	chr15	83805394	-	NFIC	chr19	3462962	-
intron-intron	ENST00000227638	ENST00000227638		ChiTaRS3.1			AA420507	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000227638	ENST00000436171		ChiTaRS3.1			AA420507	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000227638		ChiTaRS3.1			AA420507	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000436171		ChiTaRS3.1			AA420507	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-3CDS	ENST00000471014	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
intron-intron	ENST00000471014	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
intron-5UTR	ENST00000471014	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
intron-3CDS	ENST00000405570	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
intron-intron	ENST00000405570	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
intron-5UTR	ENST00000405570	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-3CDS	ENST00000396183	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-intron	ENST00000396183	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-5UTR	ENST00000396183	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-3CDS	ENST00000349496	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-intron	ENST00000349496	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-5UTR	ENST00000349496	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-3CDS	ENST00000453024	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-intron	ENST00000453024	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-5UTR	ENST00000453024	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-3CDS	ENST00000396185	ENST00000354817		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-intron	ENST00000396185	ENST00000527202		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-5UTR	ENST00000396185	ENST00000532502		ChiTaRS3.1			DA215427	CTNNB1	chr3	41241162	+	FAR1	chr11	13743275	+
5UTR-3CDS	ENST00000379440	ENST00000379440		ChiTaRS3.1			M13667	PRNP	chr20	4667114	-	PRNP	chr20	4679879	+
5UTR-3CDS	ENST00000379440	ENST00000430350		ChiTaRS3.1			M13667	PRNP	chr20	4667114	-	PRNP	chr20	4679879	+
5UTR-3CDS	ENST00000430350	ENST00000379440		ChiTaRS3.1			M13667	PRNP	chr20	4667114	-	PRNP	chr20	4679879	+
5UTR-3CDS	ENST00000430350	ENST00000430350		ChiTaRS3.1			M13667	PRNP	chr20	4667114	-	PRNP	chr20	4679879	+
intron-intron	ENST00000280551	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368533		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000469717		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000330188		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341485		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341372		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000328159		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000271850		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000302206		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368531		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000323144		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368530		ChiTaRS3.1			BE695897	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000344683	ENST00000344683		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000344683	ENST00000519480		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000344683	ENST00000522905		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000344683	ENST00000521175		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000519480	ENST00000344683		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000519480	ENST00000519480		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000519480	ENST00000522905		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000519480	ENST00000521175		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000522905	ENST00000344683		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000522905	ENST00000519480		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000522905	ENST00000522905		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000522905	ENST00000521175		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000521175	ENST00000344683		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000521175	ENST00000519480		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000521175	ENST00000522905		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-intron	ENST00000521175	ENST00000521175		ChiTaRS3.1			CV328737	MCPH1	chr8	6367655	+	MCPH1	chr8	6367043	+
intron-3CDS	ENST00000542191	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000542191	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000542191	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000261368	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000261368	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000261368	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000379538	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379538	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379538	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000379533	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379533	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379533	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000379536	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379536	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000379536	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000261367	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000261367	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000261367	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000414317	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000414317	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000414317	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000503116	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000503116	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000503116	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3CDS	ENST00000504884	ENST00000264065		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000504884	ENST00000469118		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000504884	ENST00000537515		ChiTaRS3.1			DB219427	SNCAIP	chr5	121654894	-	DNAJC10	chr2	183584821	+
intron-3UTR	ENST00000339732	ENST00000339732		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000339732	ENST00000437509		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000339732	ENST00000470031		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-3UTR	ENST00000437509	ENST00000339732		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000437509	ENST00000437509		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000437509	ENST00000470031		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-3UTR	ENST00000470031	ENST00000339732		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000470031	ENST00000437509		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000470031	ENST00000470031		ChiTaRS3.1			AA055297	GALNT15	chr3	16265491	-	GALNT15	chr3	16269980	-
intron-intron	ENST00000262435	ENST00000262435		ChiTaRS3.1			AW859727	SMURF2	chr17	62608731	+	SMURF2	chr17	62616790	-
intron-intron	ENST00000262435	ENST00000578200		ChiTaRS3.1			AW859727	SMURF2	chr17	62608731	+	SMURF2	chr17	62616790	-
intron-intron	ENST00000578200	ENST00000262435		ChiTaRS3.1			AW859727	SMURF2	chr17	62608731	+	SMURF2	chr17	62616790	-
intron-intron	ENST00000578200	ENST00000578200		ChiTaRS3.1			AW859727	SMURF2	chr17	62608731	+	SMURF2	chr17	62616790	-
3UTR-3CDS	ENST00000393196	ENST00000294304		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
3UTR-intron	ENST00000393196	ENST00000529481		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
3UTR-3CDS	ENST00000336097	ENST00000294304		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
3UTR-intron	ENST00000336097	ENST00000529481		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
intron-3CDS	ENST00000480143	ENST00000294304		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
intron-intron	ENST00000480143	ENST00000529481		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
3UTR-3CDS	ENST00000511355	ENST00000294304		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
3UTR-intron	ENST00000511355	ENST00000529481		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
intron-3CDS	ENST00000013034	ENST00000294304		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
intron-intron	ENST00000013034	ENST00000529481		ChiTaRS3.1			BF762367	NME1	chr17	49239270	-	LRP5	chr11	68183863	+
intron-intron	ENST00000600118	ENST00000427662		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000600118	ENST00000369774		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000600118	ENST00000355946		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000600118	ENST00000315994		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000600118	ENST00000540321		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000600118	ENST00000538130		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000427662		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000369774		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000355946		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000315994		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000540321		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000601220	ENST00000538130		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000427662		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000369774		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000355946		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000315994		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000540321		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
intron-intron	ENST00000312547	ENST00000538130		ChiTaRS3.1			BF815097	CHMP2A	chr19	59063444	+	SH3PXD2A	chr10	105574240	-
3UTR-3UTR	ENST00000300952	ENST00000300952		ChiTaRS3.1			AW303967	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000300952	ENST00000591446		ChiTaRS3.1			AW303967	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000300952		ChiTaRS3.1			AW303967	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
3UTR-3UTR	ENST00000591446	ENST00000591446		ChiTaRS3.1			AW303967	MIDN	chr19	1258639	+	MIDN	chr19	1258104	+
intron-intron	ENST00000450095	ENST00000366955		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000450095	ENST00000467765		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000556278	ENST00000366955		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000556278	ENST00000467765		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000378842	ENST00000366955		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000378842	ENST00000467765		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000488412	ENST00000366955		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
intron-intron	ENST00000488412	ENST00000467765		ChiTaRS3.1			BF593407	GALT	chr9	34650038	-	CENPF	chr1	214786617	-
3UTR-intron	ENST00000223095	ENST00000352203		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000223095	ENST00000601498		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000223095	ENST00000599990		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000223095	ENST00000593442		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-5UTR	ENST00000223095	ENST00000263270		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000223095	ENST00000597020		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000223095	ENST00000601649		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000352203		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000601498		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000599990		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000593442		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-5UTR	ENST00000445463	ENST00000263270		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000597020		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
3UTR-intron	ENST00000445463	ENST00000601649		ChiTaRS3.1			BU181157	SERPINE1	chr7	100782120	-	AP2S1	chr19	47354092	-
5CDS-3UTR	ENST00000362042	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000362042	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000362042	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000362042	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000362042	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000362042	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000362042	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000362042	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000585291	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000585291	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000585291	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000585291	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000585291	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000585291	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000585291	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000585291	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000357480	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000357480	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000357480	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000357480	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000357480	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000357480	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000357480	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000357480	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000361665	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000361665	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000361665	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000361665	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000361665	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000361665	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000361665	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000361665	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-3UTR	ENST00000579481	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-3UTR	ENST00000579481	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-3UTR	ENST00000579481	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-3UTR	ENST00000579481	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-intron	ENST00000579481	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-intron	ENST00000579481	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-intron	ENST00000579481	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-intron	ENST00000579481	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000582155	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000582155	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000582155	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000582155	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000582155	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000582155	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000582155	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000582155	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000583378	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000583378	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000583378	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000583378	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000583378	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000583378	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000583378	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000583378	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000536222	ENST00000362042		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000536222	ENST00000585291		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000536222	ENST00000357480		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-3UTR	ENST00000536222	ENST00000361665		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000536222	ENST00000579481		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000536222	ENST00000582155		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000536222	ENST00000583378		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
5CDS-intron	ENST00000536222	ENST00000536222		ChiTaRS3.1			AA633217	NFE2L1	chr17	46136391	-	NFE2L1	chr17	46137396	-
intron-intron	ENST00000429084	ENST00000453269		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000429084	ENST00000472509		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000429084	ENST00000452041		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000429084	ENST00000344095		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000429084	ENST00000418432		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000429084	ENST00000437822		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000429084	ENST00000497233		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000359593	ENST00000453269		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000359593	ENST00000472509		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000359593	ENST00000452041		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000359593	ENST00000344095		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000359593	ENST00000418432		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000359593	ENST00000437822		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000359593	ENST00000497233		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000478501	ENST00000453269		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000478501	ENST00000472509		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000478501	ENST00000452041		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000478501	ENST00000344095		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000478501	ENST00000418432		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000478501	ENST00000437822		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000478501	ENST00000497233		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000421755	ENST00000453269		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000421755	ENST00000472509		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000421755	ENST00000452041		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000421755	ENST00000344095		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000421755	ENST00000418432		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000421755	ENST00000437822		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000421755	ENST00000497233		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000422582	ENST00000453269		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000422582	ENST00000472509		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000422582	ENST00000452041		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000422582	ENST00000344095		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-5UTR	ENST00000422582	ENST00000418432		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000422582	ENST00000437822		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-intron	ENST00000422582	ENST00000497233		ChiTaRS3.1			BY798517	AP4M1	chr7	99705220	-	TAF6	chr7	99716537	-
intron-3UTR	ENST00000318217	ENST00000367178		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000318217	ENST00000461219		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000318217	ENST00000417268		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000318217	ENST00000367186		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000394649	ENST00000367178		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000394649	ENST00000461219		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000394649	ENST00000417268		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000394649	ENST00000367186		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000579584	ENST00000367178		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000579584	ENST00000461219		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000579584	ENST00000417268		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000579584	ENST00000367186		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000584232	ENST00000367178		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000584232	ENST00000461219		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000584232	ENST00000417268		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000584232	ENST00000367186		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000583621	ENST00000367178		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000583621	ENST00000461219		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000583621	ENST00000417268		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-3UTR	ENST00000583621	ENST00000367186		ChiTaRS3.1			D56497	MYO1D	chr17	30819797	+	SCAF8	chr6	155154950	+
intron-intron	ENST00000295897	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000295897	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000415165	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000503124	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000509063	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000401494	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000346798		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000354192		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000348990		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000357903		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000358918		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000359726		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000448388		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000440126		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000439274		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
intron-intron	ENST00000505649	ENST00000474136		ChiTaRS3.1			AA884347	ALB	chr4	74286814	-	APP	chr21	27354655	+
3UTR-intron	ENST00000549982	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000549982	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000361630	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000361630	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000552217	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000552217	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000393128	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000393128	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000547098	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000547098	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000548545	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-intron	ENST00000548545	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000552938	ENST00000319359		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
3UTR-intron	ENST00000552938	ENST00000497465		ChiTaRS3.1			CB133847	MRPL42	chr12	93896060	-	ELL3	chr15	44084547	+
intron-3UTR	ENST00000326005	ENST00000326005		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000326005	ENST00000560258		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000326005	ENST00000559753		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-intron	ENST00000326005	ENST00000560837		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560258	ENST00000326005		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560258	ENST00000560258		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560258	ENST00000559753		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-intron	ENST00000560258	ENST00000560837		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000559753	ENST00000326005		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000559753	ENST00000560258		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000559753	ENST00000559753		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-intron	ENST00000559753	ENST00000560837		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560837	ENST00000326005		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560837	ENST00000560258		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-3UTR	ENST00000560837	ENST00000559753		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
intron-intron	ENST00000560837	ENST00000560837		ChiTaRS3.1			W26817	OAZ2	chr15	64980923	+	OAZ2	chr15	64980750	-
3UTR-3CDS	ENST00000010404	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000010404	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000010404	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000010404	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000010404	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396210	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396210	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396210	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396210	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396210	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000535309	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000535309	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000535309	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000535309	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000535309	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000540056	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000540056	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000540056	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000540056	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000540056	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396209	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396209	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396209	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396209	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396209	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396207	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-3CDS	ENST00000396207	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396207	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396207	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
3UTR-5UTR	ENST00000396207	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000359720	ENST00000370872		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000359720	ENST00000340866		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000359720	ENST00000492102		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000359720	ENST00000417775		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-5UTR	ENST00000359720	ENST00000370871		ChiTaRS3.1			AI910757	MGST1	chr12	16517070	-	CRYZ	chr1	75172662	+
intron-3CDS	ENST00000397493	ENST00000377107		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000397493	ENST00000218348		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000327423	ENST00000377107		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000327423	ENST00000218348		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000434485	ENST00000377107		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000434485	ENST00000218348		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000461722	ENST00000377107		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
intron-3CDS	ENST00000461722	ENST00000218348		ChiTaRS3.1			T07607	PRR14L	chr22	32078996	+	USP11	chrX	47104299	+
3UTR-3UTR	ENST00000344096	ENST00000344096		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000393555		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000537632		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000393555	ENST00000344096		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000393555		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000537632		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000537632	ENST00000344096		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000393555		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000537632		ChiTaRS3.1			D81627	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000272930	ENST00000252032		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000272930	ENST00000453730		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-5UTR	ENST00000272930	ENST00000498079		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409633	ENST00000252032		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409633	ENST00000453730		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-5UTR	ENST00000409633	ENST00000498079		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000414443	ENST00000252032		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000414443	ENST00000453730		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-5UTR	ENST00000414443	ENST00000498079		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409953	ENST00000252032		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409953	ENST00000453730		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-5UTR	ENST00000409953	ENST00000498079		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409332	ENST00000252032		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-intron	ENST00000409332	ENST00000453730		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
intron-5UTR	ENST00000409332	ENST00000498079		ChiTaRS3.1			BF887817	UBE2F	chr2	238912169	+	C20orf194	chr20	3276800	-
3UTR-3UTR	ENST00000515359	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000515359	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000515359	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000515359	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000515359	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000515359	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000515359	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000308775	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000308775	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000541308	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000541308	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000539901	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000539901	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000545947	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000545947	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000538711	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-intron	ENST00000538711	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000515359		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000308775		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000541308		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000539901		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000545947		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-3UTR	ENST00000479935	ENST00000538711		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
intron-intron	ENST00000479935	ENST00000479935		ChiTaRS3.1			BM555687	DAG1	chr3	49572231	-	DAG1	chr3	49572272	+
3UTR-3UTR	ENST00000504876	ENST00000534336		ChiTaRS3.1			BF673537	PART1	chr5	59784139	+	MALAT1	chr11	65266571	+
intron-3UTR	ENST00000394023	ENST00000368868		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000394023	ENST00000447402		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000394023	ENST00000426705		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000394023	ENST00000435071		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-intron	ENST00000394023	ENST00000473693		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550164	ENST00000368868		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550164	ENST00000447402		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550164	ENST00000426705		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550164	ENST00000435071		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-intron	ENST00000550164	ENST00000473693		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000347471	ENST00000368868		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000347471	ENST00000447402		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000347471	ENST00000426705		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000347471	ENST00000435071		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-intron	ENST00000347471	ENST00000473693		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000267064	ENST00000368868		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000267064	ENST00000447402		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000267064	ENST00000426705		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000267064	ENST00000435071		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-intron	ENST00000267064	ENST00000473693		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550859	ENST00000368868		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550859	ENST00000447402		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550859	ENST00000426705		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000550859	ENST00000435071		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-intron	ENST00000550859	ENST00000473693		ChiTaRS3.1			AW603757	SMARCC2	chr12	56563975	-	SELENBP1	chr1	151336946	+
intron-3UTR	ENST00000327987	ENST00000375712		ChiTaRS3.1			R24447	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000327987	ENST00000418717		ChiTaRS3.1			R24447	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000559231	ENST00000375712		ChiTaRS3.1			R24447	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000559231	ENST00000418717		ChiTaRS3.1			R24447	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000390394	ENST00000390394		ChiTaRS3.1			BM706977	TRBV20-1	chr16	2139563	+	TRBV20-1	chr16	2139511	-
intron-intron	ENST00000362507	ENST00000362507		ChiTaRS3.1			BG166277	RNU5F-1	chr1	220170442	-	RNU5F-1	chr1	220170428	+
intron-3CDS	ENST00000486975	ENST00000341170		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-intron	ENST00000486975	ENST00000354801		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-intron	ENST00000486975	ENST00000484708		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-3CDS	ENST00000451576	ENST00000341170		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-intron	ENST00000451576	ENST00000354801		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-intron	ENST00000451576	ENST00000484708		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
Frame-shit	ENST00000064724	ENST00000341170		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
5CDS-intron	ENST00000064724	ENST00000354801		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
5CDS-intron	ENST00000064724	ENST00000484708		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
3UTR-3CDS	ENST00000489485	ENST00000341170		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
3UTR-intron	ENST00000489485	ENST00000354801		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
3UTR-intron	ENST00000489485	ENST00000484708		ChiTaRS3.1			DA165167	CLDN11	chr3	170150395	+	TSTD2	chr9	100364965	-
intron-intron	ENST00000351050	ENST00000351050		ChiTaRS3.1			CD620137	GNAT2	chr1	110155867	+	GNAT2	chr1	110154864	+
3UTR-3UTR	ENST00000397927	ENST00000397927		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000397927	ENST00000313669		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000397927	ENST00000528707		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000313669	ENST00000397927		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000313669	ENST00000313669		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000313669	ENST00000528707		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000528707	ENST00000397927		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000528707	ENST00000313669		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
3UTR-3UTR	ENST00000528707	ENST00000528707		ChiTaRS3.1			AA461137	COL26A1	chr7	101201865	+	COL26A1	chr7	101201070	+
intron-intron	ENST00000357992	ENST00000369911		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000357992	ENST00000360864		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000289703	ENST00000369911		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000289703	ENST00000360864		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000468523	ENST00000369911		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000468523	ENST00000360864		ChiTaRS3.1			AW372867	ELK4	chr1	205589416	-	DNAJC5	chr20	62532466	+
intron-intron	ENST00000370902	ENST00000370902		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370902	ENST00000370886		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370902	ENST00000370885		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370902	ENST00000485122		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370902	ENST00000471049		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370886	ENST00000370902		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370886	ENST00000370886		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370886	ENST00000370885		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370886	ENST00000485122		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370886	ENST00000471049		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370885	ENST00000370902		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370885	ENST00000370886		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370885	ENST00000370885		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370885	ENST00000485122		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000370885	ENST00000471049		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000485122	ENST00000370902		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000485122	ENST00000370886		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000485122	ENST00000370885		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000485122	ENST00000485122		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000485122	ENST00000471049		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000471049	ENST00000370902		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000471049	ENST00000370886		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000471049	ENST00000370885		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000471049	ENST00000485122		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-intron	ENST00000471049	ENST00000471049		ChiTaRS3.1			BF361687	EXOSC1	chr10	99195675	-	EXOSC1	chr10	99196505	-
intron-3CDS	ENST00000262367	ENST00000262367		ChiTaRS3.1			BI003567	CREBBP	chr16	3843489	-	CREBBP	chr16	3860715	-
intron-3CDS	ENST00000262367	ENST00000382070		ChiTaRS3.1			BI003567	CREBBP	chr16	3843489	-	CREBBP	chr16	3860715	-
intron-3CDS	ENST00000382070	ENST00000262367		ChiTaRS3.1			BI003567	CREBBP	chr16	3843489	-	CREBBP	chr16	3860715	-
intron-3CDS	ENST00000382070	ENST00000382070		ChiTaRS3.1			BI003567	CREBBP	chr16	3843489	-	CREBBP	chr16	3860715	-
intron-intron	ENST00000377795	ENST00000457351		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-3UTR	ENST00000377795	ENST00000296487		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000377795	ENST00000323588		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000377795	ENST00000409502		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000353334	ENST00000457351		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-3UTR	ENST00000353334	ENST00000296487		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000353334	ENST00000323588		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000353334	ENST00000409502		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000524315	ENST00000457351		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-3UTR	ENST00000524315	ENST00000296487		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000524315	ENST00000323588		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000524315	ENST00000409502		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000009530	ENST00000457351		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-3UTR	ENST00000009530	ENST00000296487		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000009530	ENST00000323588		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-intron	ENST00000009530	ENST00000409502		ChiTaRS3.1			BF875527	CD74	chr5	149781436	+	PPM1M	chr3	52283595	+
intron-3UTR	ENST00000216037	ENST00000216037		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000216037	ENST00000403532		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000216037	ENST00000405219		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000216037	ENST00000344347		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000403532	ENST00000216037		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000403532	ENST00000403532		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000403532	ENST00000405219		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000403532	ENST00000344347		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000405219	ENST00000216037		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000405219	ENST00000403532		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000405219	ENST00000405219		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000405219	ENST00000344347		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000344347	ENST00000216037		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-3UTR	ENST00000344347	ENST00000403532		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000344347	ENST00000405219		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
intron-intron	ENST00000344347	ENST00000344347		ChiTaRS3.1			AA879027	XBP1	chr22	29190611	-	XBP1	chr22	29190553	+
3UTR-intron	ENST00000221166	ENST00000261592		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000269185		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000535384		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000535475		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000589544		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000538587		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000221166	ENST00000590846		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000261592		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000269185		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000535384		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000535475		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000589544		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000538587		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000518131	ENST00000590846		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000261592		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000269185		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000535384		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000535475		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000589544		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000538587		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-intron	ENST00000521540	ENST00000590846		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000261592		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000269185		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000535384		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000535475		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000589544		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000538587		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000437366	ENST00000590846		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000261592		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000269185		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000535384		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000535475		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000589544		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000538587		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
3UTR-intron	ENST00000433454	ENST00000590846		ChiTaRS3.1			BX489207	NEFM	chr8	24776294	-	NOL4	chr18	31655782	+
intron-3CDS	ENST00000350026	ENST00000428443		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-intron	ENST00000350026	ENST00000486468		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-3CDS	ENST00000346085	ENST00000428443		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-intron	ENST00000346085	ENST00000486468		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-3CDS	ENST00000367148	ENST00000428443		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-intron	ENST00000367148	ENST00000486468		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-3CDS	ENST00000275248	ENST00000428443		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-intron	ENST00000275248	ENST00000486468		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-3CDS	ENST00000478761	ENST00000428443		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-intron	ENST00000478761	ENST00000486468		ChiTaRS3.1			AW952707	ARID1B	chr6	157107997	-	SESTD1	chr2	179982313	-
intron-3UTR	ENST00000360319	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000360319	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000422373	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000422373	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000369850	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000369850	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000369856	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000369856	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000344736	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000344736	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000498491	ENST00000279873		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-intron	ENST00000498491	ENST00000309334		ChiTaRS3.1			BQ329407	FLNA	chrX	153590692	+	ARID5B	chr10	63852983	+
intron-3UTR	ENST00000295666	ENST00000447092		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000295666	ENST00000357750		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000295666	ENST00000395139		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000295666	ENST00000442581		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000537922	ENST00000447092		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000537922	ENST00000357750		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000537922	ENST00000395139		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000537922	ENST00000442581		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000512512	ENST00000447092		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000512512	ENST00000357750		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000512512	ENST00000395139		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3UTR	ENST00000512512	ENST00000442581		ChiTaRS3.1			BF853827	IGFBP7	chr4	57939403	-	HYAL2	chr3	50355278	+
intron-3CDS	ENST00000367455	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367455	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367455	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367455	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367454	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367454	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367454	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367454	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367451	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367451	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367451	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367451	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367448	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367448	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367448	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367448	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367449	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367449	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367449	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367449	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367452	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367452	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367452	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000367452	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000530098	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000530098	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000530098	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000530098	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000483156	ENST00000519065		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000483156	ENST00000398283		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000483156	ENST00000519108		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-3CDS	ENST00000483156	ENST00000368632		ChiTaRS3.1			F07807	UCHL5	chr1	192984201	-	HDAC2	chr6	114267253	-
intron-intron	ENST00000381196	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000381196	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000360074	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000537002	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397617	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000358503	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397611	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000355233	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000356435	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000540109	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000486161	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000397606	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000463477	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000381196		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000360074		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000537002		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000397617		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000358503		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000397611		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000355233		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000356435		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000540109		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000486161		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000397606		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000463477		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-intron	ENST00000471274	ENST00000471274		ChiTaRS3.1			DB302177	PTPRD	chr9	8614200	+	PTPRD	chr9	8612544	+
intron-3UTR	ENST00000291442	ENST00000291442		ChiTaRS3.1			CA450537	NR2F6	chr19	17342839	+	NR2F6	chr19	17342919	-
intron-intron	ENST00000253413	ENST00000253413		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000253413	ENST00000399796		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000253413	ENST00000399798		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000253413	ENST00000478963		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399796	ENST00000253413		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399796	ENST00000399796		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399796	ENST00000399798		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399796	ENST00000478963		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399798	ENST00000253413		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399798	ENST00000399796		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399798	ENST00000399798		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000399798	ENST00000478963		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000478963	ENST00000253413		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000478963	ENST00000399796		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000478963	ENST00000399798		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000478963	ENST00000478963		ChiTaRS3.1			BE144497	ATP6V1E1	chr22	18092848	+	ATP6V1E1	chr22	18090368	+
intron-intron	ENST00000254508	ENST00000296812		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000281623		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000509134		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000296812		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000281623		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000509134		ChiTaRS3.1			BF331537	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000333274	ENST00000534526		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000531134		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000427716		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000266482		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000546442		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000525053		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000381025		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000472289		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000333274	ENST00000473513		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000534526		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000531134		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000427716		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000266482		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000546442		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000525053		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000381025		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000472289		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000509503	ENST00000473513		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000534526		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000531134		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000427716		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000266482		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000546442		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000525053		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000381025		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000472289		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
intron-intron	ENST00000510359	ENST00000473513		ChiTaRS3.1			BE001767	EFNA5	chr5	106816610	-	FGD4	chr12	32639398	+
3UTR-3CDS	ENST00000371743	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000450535	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000441722	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000417721	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-3CDS	ENST00000458653	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000326677	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000428008	ENST00000599539		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000339471		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000251453		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000601655		ChiTaRS3.1			BC070487	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-intron	ENST00000488813	ENST00000341217		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000581407		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000582266		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000452648		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000582059		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000583953		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000577682		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000583522		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000581381		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000341217		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000581407		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000582266		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000452648		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000582059		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000583953		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000577682		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000583522		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000581381		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000341217		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000581407		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000582266		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000452648		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000582059		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000583953		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000577682		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000583522		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000581381		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000341217		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000581407		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000582266		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000452648		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000582059		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000583953		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000577682		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000583522		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000581381		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000341217		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000581407		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000582266		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000452648		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000582059		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000583953		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000577682		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000583522		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000581381		ChiTaRS3.1			BE162477	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000509528	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000509528	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000509528	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000509528	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-intron	ENST00000509528	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000509528	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000509528	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000457781	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000457781	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000457781	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000457781	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000457781	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000457781	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000457781	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000505242	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505242	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505242	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505242	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000505242	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505242	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505242	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000423823	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000423823	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000423823	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000423823	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000423823	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000423823	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000423823	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-intron	ENST00000507959	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000507959	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000507959	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000507959	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-intron	ENST00000507959	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000507959	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
intron-3UTR	ENST00000507959	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000446502	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000446502	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000446502	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000446502	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000446502	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000446502	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000446502	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000505365	ENST00000509528		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505365	ENST00000457781		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505365	ENST00000505242		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505365	ENST00000423823		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-intron	ENST00000505365	ENST00000507959		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505365	ENST00000446502		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000505365	ENST00000505365		ChiTaRS3.1			AA639067	ZNF302	chr19	35176791	+	ZNF302	chr19	35176843	-
3UTR-3UTR	ENST00000263372	ENST00000263372		ChiTaRS3.1			BE828357	KCNK6	chr19	38818997	-	KCNK6	chr19	38818200	+
3UTR-intron	ENST00000263372	ENST00000588137		ChiTaRS3.1			BE828357	KCNK6	chr19	38818997	-	KCNK6	chr19	38818200	+
intron-3UTR	ENST00000588137	ENST00000263372		ChiTaRS3.1			BE828357	KCNK6	chr19	38818997	-	KCNK6	chr19	38818200	+
intron-intron	ENST00000588137	ENST00000588137		ChiTaRS3.1			BE828357	KCNK6	chr19	38818997	-	KCNK6	chr19	38818200	+
intron-3UTR	ENST00000371225	ENST00000371225		ChiTaRS3.1			AA888537	TACSTD2	chr1	59041333	-	TACSTD2	chr1	59041206	+
5UTR-intron	ENST00000582888	ENST00000217515		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000582888	ENST00000585497		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000582888	ENST00000590954		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-5UTR	ENST00000582888	ENST00000540155		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000602676	ENST00000217515		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000602676	ENST00000585497		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000602676	ENST00000590954		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-5UTR	ENST00000602676	ENST00000540155		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000322297	ENST00000217515		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000322297	ENST00000585497		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000322297	ENST00000590954		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-5UTR	ENST00000322297	ENST00000540155		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000583542	ENST00000217515		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000583542	ENST00000585497		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-intron	ENST00000583542	ENST00000590954		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
5UTR-5UTR	ENST00000583542	ENST00000540155		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
intron-intron	ENST00000588673	ENST00000217515		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
intron-intron	ENST00000588673	ENST00000585497		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
intron-intron	ENST00000588673	ENST00000590954		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
intron-5UTR	ENST00000588673	ENST00000540155		ChiTaRS3.1			BC025017	OAZ1	chr19	2269530	-	TXNL1	chr18	54318359	-
intron-intron	ENST00000263846	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000263846	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000263846	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000263846	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000263846	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000263846	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000540677	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540677	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540677	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540677	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540677	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000540677	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000539008	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000539008	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000539008	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000539008	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000539008	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000539008	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000542836	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542836	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542836	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542836	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542836	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000542836	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000542670	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542670	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542670	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542670	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000542670	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000542670	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000535826	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000535826	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000535826	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000535826	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000535826	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000535826	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000540831	ENST00000494757		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540831	ENST00000323571		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540831	ENST00000585043		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540831	ENST00000394103		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-3UTR	ENST00000540831	ENST00000536600		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000540831	ENST00000583130		ChiTaRS3.1			DA107627	SYT7	chr11	61310063	+	WIPF2	chr17	38435503	+
intron-intron	ENST00000341998	ENST00000297423		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000341998	ENST00000518074		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000341998	ENST00000541342		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000341998	ENST00000521214		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000341998	ENST00000517693		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000341998	ENST00000518060		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000297423		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000518074		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000541342		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000521214		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000517693		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000286344	ENST00000518060		ChiTaRS3.1			AV723197	SLC24A2	chr9	19508673	+	SPIDR	chr8	48649761	-
intron-intron	ENST00000326448	ENST00000378295		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000604074		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000354437		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000346387		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000357733		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000603362		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000604479		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378285		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378280		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378288		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000326448	ENST00000378290		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378295		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000604074		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000354437		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000346387		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000357733		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000603362		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000604479		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378285		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378280		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378288		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000483465	ENST00000378290		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378295		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000604074		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000354437		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000346387		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000357733		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000603362		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000604479		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378285		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378280		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378288		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000496589	ENST00000378290		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378295		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000604074		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000354437		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000346387		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000357733		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000603362		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000604479		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378285		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378280		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378288		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
intron-intron	ENST00000477495	ENST00000378290		ChiTaRS3.1			BX280087	IFT80	chr3	160126797	+	TP73	chr1	3580033	-
Frame-shit	ENST00000279550	ENST00000262193		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
5CDS-5UTR	ENST00000279550	ENST00000462957		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
Frame-shit	ENST00000228251	ENST00000262193		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
5CDS-5UTR	ENST00000228251	ENST00000462957		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
5UTR-3CDS	ENST00000546164	ENST00000262193		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
5UTR-5UTR	ENST00000546164	ENST00000462957		ChiTaRS3.1			BE122757	YBX3	chr12	10856655	-	PSMB1	chr6	170844386	+
intron-intron	ENST00000538132	ENST00000301740		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000538132	ENST00000574593		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000217426	ENST00000301740		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000217426	ENST00000574593		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000468908	ENST00000301740		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000468908	ENST00000574593		ChiTaRS3.1			DA207667	AHCY	chr20	32891060	-	SRRM2	chr16	2818917	+
intron-intron	ENST00000462832	ENST00000462832		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000462832	ENST00000379579		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000462832	ENST00000334056		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000379579	ENST00000462832		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000379579	ENST00000379579		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000379579	ENST00000334056		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000334056	ENST00000462832		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000334056	ENST00000379579		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-intron	ENST00000334056	ENST00000334056		ChiTaRS3.1			CV358747	SPDYA	chr2	29026621	-	SPDYA	chr2	29027926	-
intron-3UTR	ENST00000261692	ENST00000261692		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000261692	ENST00000538446		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000261692	ENST00000535979		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000261692	ENST00000542174		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-intron	ENST00000261692	ENST00000544658		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000538446	ENST00000261692		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000538446	ENST00000538446		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000538446	ENST00000535979		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000538446	ENST00000542174		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-intron	ENST00000538446	ENST00000544658		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000535979	ENST00000261692		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000535979	ENST00000538446		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000535979	ENST00000535979		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000535979	ENST00000542174		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-intron	ENST00000535979	ENST00000544658		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000542174	ENST00000261692		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000542174	ENST00000538446		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000542174	ENST00000535979		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000542174	ENST00000542174		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-intron	ENST00000542174	ENST00000544658		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000544658	ENST00000261692		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000544658	ENST00000538446		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000544658	ENST00000535979		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000544658	ENST00000542174		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-intron	ENST00000544658	ENST00000544658		ChiTaRS3.1			AW972807	CDK2AP1	chr12	123745578	-	CDK2AP1	chr12	123745735	+
intron-3UTR	ENST00000373036	ENST00000373036		ChiTaRS3.1			N22957	MTF1	chr1	38279773	+	MTF1	chr1	38276456	+
intron-intron	ENST00000373036	ENST00000468190		ChiTaRS3.1			N22957	MTF1	chr1	38279773	+	MTF1	chr1	38276456	+
intron-3UTR	ENST00000468190	ENST00000373036		ChiTaRS3.1			N22957	MTF1	chr1	38279773	+	MTF1	chr1	38276456	+
intron-intron	ENST00000468190	ENST00000468190		ChiTaRS3.1			N22957	MTF1	chr1	38279773	+	MTF1	chr1	38276456	+
intron-intron	ENST00000443824	ENST00000348405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000513858		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000395310		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000443462		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000509142		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000326950		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000432794		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000311785		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000448323		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000505472		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000500777		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000508502		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000355196		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000264405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000505984		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000508479		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000443824	ENST00000436790		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000348405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000513858		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000395310		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000443462		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000509142		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000326950		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000432794		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000311785		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000448323		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000505472		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000500777		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000508502		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000355196		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000264405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000505984		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000508479		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000359276	ENST00000436790		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000348405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000513858		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000395310		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000443462		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000509142		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000326950		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000432794		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000311785		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000448323		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000505472		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000500777		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000508502		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000355196		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000264405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000505984		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000508479		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000380241	ENST00000436790		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000348405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000513858		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000395310		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000443462		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000509142		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000326950		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000432794		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000311785		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000448323		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000505472		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000500777		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000508502		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000355196		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000264405		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000505984		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000508479		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-intron	ENST00000483053	ENST00000436790		ChiTaRS3.1			BF839137	CTPS2	chrX	16672693	+	SEC31A	chr4	83803824	-
intron-3CDS	ENST00000440909	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000440909	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000440909	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000440909	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000448921	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000437397	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000355814	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000393087	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000393088	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000404814	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000449399	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000402629	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000310118		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000435761		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000439383		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000555289	ENST00000459910		ChiTaRS3.1			AF075367	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
3UTR-intron	ENST00000227507	ENST00000404039		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000227507	ENST00000406326		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000227507	ENST00000377770		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000227507	ENST00000332007		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000227507	ENST00000496611		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000227507	ENST00000427557		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000404039		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000406326		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000377770		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000332007		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000496611		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
intron-intron	ENST00000536559	ENST00000427557		ChiTaRS3.1			AW997667	CCND1	chr11	69466648	-	DPP6	chr7	153659694	+
3UTR-intron	ENST00000448150	ENST00000371872		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000439388		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000422262		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000371868		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000469828		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000371867		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000448150	ENST00000298628		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000371872		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000439388		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000422262		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000371868		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000469828		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000371867		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000367649	ENST00000298628		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000371872		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000439388		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000422262		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000371868		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000469828		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000371867		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-intron	ENST00000465723	ENST00000298628		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000371872		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000439388		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000422262		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000371868		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000469828		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000371867		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
3UTR-intron	ENST00000462775	ENST00000298628		ChiTaRS3.1			DA839467	RASAL2	chr1	178443270	+	SARDH	chr9	136567650	-
intron-3CDS	ENST00000306125	ENST00000306125		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000306125	ENST00000414533		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000306125	ENST00000470225		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000306125	ENST00000420147		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000414533	ENST00000306125		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000414533	ENST00000414533		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000414533	ENST00000470225		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000414533	ENST00000420147		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000470225	ENST00000306125		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000470225	ENST00000414533		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000470225	ENST00000470225		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000470225	ENST00000420147		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000420147	ENST00000306125		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000420147	ENST00000414533		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000420147	ENST00000470225		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000420147	ENST00000420147		ChiTaRS3.1			BQ330017	QARS	chr3	49137674	+	QARS	chr3	49139284	-
3UTR-3UTR	ENST00000009041	ENST00000009041		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000544203		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000434197		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000396013		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000009041		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000544203		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000434197		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000396013		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000009041		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000544203		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000434197		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000396013		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000009041		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000544203		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000434197		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000396013		ChiTaRS3.1			AI348377	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3CDS	ENST00000248553	ENST00000392587		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000248553	ENST00000392586		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000248553	ENST00000392588		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000248553	ENST00000392589		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000248553	ENST00000359451		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000429938	ENST00000392587		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000429938	ENST00000392586		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000429938	ENST00000392588		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000429938	ENST00000392589		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
3UTR-3CDS	ENST00000429938	ENST00000359451		ChiTaRS3.1			BU631277	HSPB1	chr7	75933535	-	WASF1	chr6	110423249	+
intron-3UTR	ENST00000305963	ENST00000305963		ChiTaRS3.1			BM462257	MMGT1	chrX	135046639	+	MMGT1	chrX	135046564	-
intron-3UTR	ENST00000305963	ENST00000433339		ChiTaRS3.1			BM462257	MMGT1	chrX	135046639	+	MMGT1	chrX	135046564	-
intron-3UTR	ENST00000433339	ENST00000305963		ChiTaRS3.1			BM462257	MMGT1	chrX	135046639	+	MMGT1	chrX	135046564	-
intron-3UTR	ENST00000433339	ENST00000433339		ChiTaRS3.1			BM462257	MMGT1	chrX	135046639	+	MMGT1	chrX	135046564	-
intron-intron	ENST00000308158	ENST00000396441		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000389707		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000401424		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000389708		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000361003		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000403290		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000403510		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000403482		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000308158	ENST00000497429		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000396441		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000389707		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000401424		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000389708		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000361003		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000403290		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000403510		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000403482		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000481811	ENST00000497429		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000396441		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000389707		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000401424		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000389708		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000361003		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000403290		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000403510		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000403482		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-intron	ENST00000476170	ENST00000497429		ChiTaRS3.1			DB346797	PHYKPL	chr5	177647769	-	ARNTL	chr11	13363299	-
intron-3UTR	ENST00000216185	ENST00000216185		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000216185	ENST00000416967		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-5UTR	ENST00000216185	ENST00000487725		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000216185	ENST00000403313		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000416967	ENST00000216185		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000416967	ENST00000416967		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-5UTR	ENST00000416967	ENST00000487725		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000416967	ENST00000403313		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000487725	ENST00000216185		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000487725	ENST00000416967		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-5UTR	ENST00000487725	ENST00000487725		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000487725	ENST00000403313		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000403313	ENST00000216185		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000403313	ENST00000416967		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-5UTR	ENST00000403313	ENST00000487725		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
intron-3UTR	ENST00000403313	ENST00000403313		ChiTaRS3.1			CA312207	TXN2	chr22	36863554	+	TXN2	chr22	36863665	-
Frame-shit	ENST00000466387	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000466387	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000466387	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000466387	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000496558	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000496558	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000496558	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000361291	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000361291	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000361291	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000402739	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000402739	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000402739	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000540488	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000540488	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000540488	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000541047	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000541047	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000541047	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
Frame-shit	ENST00000343114	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000343114	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
5CDS-intron	ENST00000343114	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000496251	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-intron	ENST00000496251	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-intron	ENST00000496251	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000466387		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000496558		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000361291		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000402739		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000540488		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000541047		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-3CDS	ENST00000409266	ENST00000343114		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-intron	ENST00000409266	ENST00000496251		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-intron	ENST00000409266	ENST00000409266		ChiTaRS3.1			BE504037	CTNNA2	chr2	80773084	-	CTNNA2	chr2	80808851	-
intron-intron	ENST00000458659	ENST00000330978		ChiTaRS3.1			BI046797	TSC22D1	chr13	45008318	+	BOLA2	chr16	30080184	-
intron-intron	ENST00000501704	ENST00000330978		ChiTaRS3.1			BI046797	TSC22D1	chr13	45008318	+	BOLA2	chr16	30080184	-
intron-intron	ENST00000261489	ENST00000330978		ChiTaRS3.1			BI046797	TSC22D1	chr13	45008318	+	BOLA2	chr16	30080184	-
intron-intron	ENST00000460842	ENST00000330978		ChiTaRS3.1			BI046797	TSC22D1	chr13	45008318	+	BOLA2	chr16	30080184	-
intron-intron	ENST00000534358	ENST00000556508		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000534358	ENST00000453495		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000534358	ENST00000414716		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000534358	ENST00000418279		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000389506	ENST00000556508		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000389506	ENST00000453495		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000389506	ENST00000414716		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000389506	ENST00000418279		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000354520	ENST00000556508		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000354520	ENST00000453495		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000354520	ENST00000414716		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000354520	ENST00000418279		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000420751	ENST00000556508		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000420751	ENST00000453495		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000420751	ENST00000414716		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
intron-intron	ENST00000420751	ENST00000418279		ChiTaRS3.1			AM422013	KMT2A	chr11	118353726	+	CEP170B	chr14	105342773	+
Frame-shit	ENST00000373210	ENST00000373210		ChiTaRS3.1			BF366897	AGO4	chr1	36307066	-	AGO4	chr1	36301459	+
5CDS-intron	ENST00000373210	ENST00000488778		ChiTaRS3.1			BF366897	AGO4	chr1	36307066	-	AGO4	chr1	36301459	+
intron-3CDS	ENST00000488778	ENST00000373210		ChiTaRS3.1			BF366897	AGO4	chr1	36307066	-	AGO4	chr1	36301459	+
intron-intron	ENST00000488778	ENST00000488778		ChiTaRS3.1			BF366897	AGO4	chr1	36307066	-	AGO4	chr1	36301459	+
intron-intron	ENST00000361511	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000361511	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000361511	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000361511	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000361511	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000361511	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000543630	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000359763	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000349874	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000471570	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000361511		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000543630		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000359763		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000349874		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000471570		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-intron	ENST00000544635	ENST00000544635		ChiTaRS3.1			AF027977	PPEF1	chrX	18725672	-	PPEF1	chrX	18725760	+
intron-3UTR	ENST00000413566	ENST00000413566		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000413566	ENST00000340918		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000413566	ENST00000556911		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-3UTR	ENST00000340918	ENST00000413566		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000340918	ENST00000340918		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000340918	ENST00000556911		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-3UTR	ENST00000556911	ENST00000413566		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000556911	ENST00000340918		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
intron-intron	ENST00000556911	ENST00000556911		ChiTaRS3.1			AA728867	EXOC5	chr14	57673318	-	EXOC5	chr14	57673436	+
3UTR-intron	ENST00000282541	ENST00000396981		ChiTaRS3.1			BF849097	GPD1L	chr3	32210011	-	UBE2G1	chr17	4268537	-
3UTR-intron	ENST00000282541	ENST00000572484		ChiTaRS3.1			BF849097	GPD1L	chr3	32210011	-	UBE2G1	chr17	4268537	-
intron-3CDS	ENST00000358901	ENST00000358901		ChiTaRS3.1			AI907427	VCP	chr9	35059594	-	VCP	chr9	35059663	+
intron-intron	ENST00000488324	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000488324	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000488324	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000399199	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000399199	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000274853	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000274853	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000498031	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000498031	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000444206	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000444206	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000438815	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438815	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000552716	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000552716	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000491628	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000491628	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000435929	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435929	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000412189	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000412189	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000548255	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000548255	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000493833	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000493833	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000438945	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000438945	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000455935	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000455935	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000551049	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551049	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000472334	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000472334	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000451544	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000451544	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000437121	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000437121	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000551034	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551034	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000465704	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000465704	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000383573	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000383573	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000400554	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000400554	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000550073	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000550073	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000492746	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000492746	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000449705	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000449705	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000443517	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000443517	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000551784	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000551784	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000487859	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000487859	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000488324		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000399199		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000274853		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000498031		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000444206		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000438815		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000552716		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000491628		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000435929		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000412189		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000548255		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000493833		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000438945		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000455935		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000551049		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000472334		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000451544		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000437121		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000551034		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000465704		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000383573		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-5UTR	ENST00000435006	ENST00000400554		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000550073		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000492746		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000449705		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000443517		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000551784		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000487859		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000435006	ENST00000435006		ChiTaRS3.1			CF125787	PPP1R18	chr6	2034813	-	PPP1R18	chr6	1947000	-
intron-intron	ENST00000321265	ENST00000321265		ChiTaRS3.1			BQ362377	NUDC	chr1	27190702	-	NUDC	chr1	27190141	+
intron-intron	ENST00000321265	ENST00000484772		ChiTaRS3.1			BQ362377	NUDC	chr1	27190702	-	NUDC	chr1	27190141	+
intron-intron	ENST00000484772	ENST00000321265		ChiTaRS3.1			BQ362377	NUDC	chr1	27190702	-	NUDC	chr1	27190141	+
intron-intron	ENST00000484772	ENST00000484772		ChiTaRS3.1			BQ362377	NUDC	chr1	27190702	-	NUDC	chr1	27190141	+
intron-3UTR	ENST00000355086	ENST00000420304		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-3UTR	ENST00000355086	ENST00000366820		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-intron	ENST00000355086	ENST00000474493		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-3UTR	ENST00000357825	ENST00000420304		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-3UTR	ENST00000357825	ENST00000366820		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-intron	ENST00000357825	ENST00000474493		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-3UTR	ENST00000543397	ENST00000420304		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-3UTR	ENST00000543397	ENST00000366820		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-intron	ENST00000543397	ENST00000474493		ChiTaRS3.1			AK094077	SRGAP1	chr12	64393594	+	LEFTY2	chr1	226124561	-
intron-intron	ENST00000384994	ENST00000359139		ChiTaRS3.1			BE929947	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000395741		ChiTaRS3.1			BE929947	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000395744		ChiTaRS3.1			BE929947	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000384994	ENST00000216061		ChiTaRS3.1			BE929947	NEAT1	chr11	65191545	-	PPP6R2	chr22	50862071	-
intron-intron	ENST00000295065	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000295065	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000379383	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000404530	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000490459	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000426310	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000604948		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000557565		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000250377		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000321130		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000534898		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000603544		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000605870		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000407893	ENST00000603588		ChiTaRS3.1			BI772797	MEMO1	chr2	32252781	-	KIAA0391	chr14	35747625	+
intron-intron	ENST00000517956	ENST00000503538		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-intron	ENST00000517956	ENST00000312916		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-intron	ENST00000517956	ENST00000506806		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-intron	ENST00000443022	ENST00000503538		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-intron	ENST00000443022	ENST00000312916		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-intron	ENST00000443022	ENST00000506806		ChiTaRS3.1			Z28907	FBXO32	chr8	124512203	-	AGGF1	chr5	76355456	+
intron-3CDS	ENST00000278412	ENST00000257261		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-3CDS	ENST00000278412	ENST00000522056		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-3CDS	ENST00000278412	ENST00000278840		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-3CDS	ENST00000278412	ENST00000521849		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-intron	ENST00000278412	ENST00000574708		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-intron	ENST00000278412	ENST00000522639		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-intron	ENST00000278412	ENST00000517839		ChiTaRS3.1			CX787277	SSRP1	chr11	57093553	-	FADS2	chr11	61605334	+
intron-3CDS	ENST00000549578	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549578	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549578	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549578	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549578	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549578	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000360579	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000552130	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000447578	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
Frame-shit	ENST00000546588	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
5CDS-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000549970	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000549578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000360579		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000552130		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000447578		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000546588		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-3CDS	ENST00000551655	ENST00000549970		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			CB243627	VPS29	chr12	110929497	+	VPS29	chr12	110930904	-
5CDS-3UTR	ENST00000261590	ENST00000261942		ChiTaRS3.1			AW374097	DSG2	chr18	29104680	-	FAF2	chr5	175936996	-
5CDS-intron	ENST00000261590	ENST00000510446		ChiTaRS3.1			AW374097	DSG2	chr18	29104680	-	FAF2	chr5	175936996	-
intron-3UTR	ENST00000585206	ENST00000261942		ChiTaRS3.1			AW374097	DSG2	chr18	29104680	-	FAF2	chr5	175936996	-
intron-intron	ENST00000585206	ENST00000510446		ChiTaRS3.1			AW374097	DSG2	chr18	29104680	-	FAF2	chr5	175936996	-
intron-intron	ENST00000369109	ENST00000369109		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000369109	ENST00000360244		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000369109	ENST00000414276		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000369109	ENST00000461320		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000360244	ENST00000369109		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000360244	ENST00000360244		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000360244	ENST00000414276		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000360244	ENST00000461320		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000414276	ENST00000369109		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000414276	ENST00000360244		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000414276	ENST00000414276		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000414276	ENST00000461320		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000461320	ENST00000369109		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000461320	ENST00000360244		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000461320	ENST00000414276		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000461320	ENST00000461320		ChiTaRS3.1			BG982667	APH1A	chr1	150238277	-	APH1A	chr1	150238880	-
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY282398	KMT2A	chr11	118359135	+	MLLT3	chr9	20373303	-
intron-intron	ENST00000404648	ENST00000584348		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000571335		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-3UTR	ENST00000404648	ENST00000436810		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000542886		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000457293		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000270570		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000575023		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000404648	ENST00000395585		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000584348		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000571335		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-3UTR	ENST00000405164	ENST00000436810		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000542886		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000457293		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000270570		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000575023		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000405164	ENST00000395585		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000584348		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000571335		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-3UTR	ENST00000336098	ENST00000436810		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000542886		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000457293		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000270570		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000575023		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000336098	ENST00000395585		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000584348		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000571335		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-3UTR	ENST00000407946	ENST00000436810		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000542886		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000457293		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000270570		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000575023		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000407946	ENST00000395585		ChiTaRS3.1			AV655197	FGG	chr4	155525480	-	SLC47A1	chr17	19480676	+
intron-intron	ENST00000323108	ENST00000472748		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000323108	ENST00000422440		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000323108	ENST00000392592		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000288390	ENST00000472748		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000288390	ENST00000422440		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000288390	ENST00000392592		ChiTaRS3.1			BF947427	SPATS1	chr6	44276941	+	SLC25A12	chr2	172650608	+
intron-intron	ENST00000361417	ENST00000264741		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000361417	ENST00000422441		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000356063	ENST00000264741		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000356063	ENST00000422441		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000534672	ENST00000264741		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000534672	ENST00000422441		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000527898	ENST00000264741		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000527898	ENST00000422441		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000524713	ENST00000264741		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000524713	ENST00000422441		ChiTaRS3.1			BF748867	PHLDB1	chr11	118480181	-	ITGA9	chr3	37634981	+
intron-intron	ENST00000337018	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000337018	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000337018	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000452918	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000452918	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000452918	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000601879	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000601879	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000601879	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
5CDS-intron	ENST00000600377	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
5CDS-intron	ENST00000600377	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
5CDS-intron	ENST00000600377	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000456085	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000456085	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000456085	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000598202	ENST00000381340		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000598202	ENST00000545902		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-intron	ENST00000598202	ENST00000242737		ChiTaRS3.1			AL832587	SUGP2	chr19	19103732	-	ITPR2	chr12	26536695	+
intron-3UTR	ENST00000371837	ENST00000327671		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000371837	ENST00000518672		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000371837	ENST00000524021		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000371837	ENST00000335589		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000371837	ENST00000518076		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000487618	ENST00000327671		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000487618	ENST00000518672		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000487618	ENST00000524021		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000487618	ENST00000335589		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000487618	ENST00000518076		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000336233	ENST00000327671		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000336233	ENST00000518672		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000336233	ENST00000524021		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000336233	ENST00000335589		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000336233	ENST00000518076		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000456827	ENST00000327671		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-3UTR	ENST00000456827	ENST00000518672		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000456827	ENST00000524021		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000456827	ENST00000335589		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000456827	ENST00000518076		ChiTaRS3.1			BE763407	LIPA	chr10	91066582	-	FUT10	chr8	33229503	-
intron-intron	ENST00000369002	ENST00000164024		ChiTaRS3.1			AI471307	SEC63	chr6	108277086	-	CELSR3	chr3	48663170	+
intron-intron	ENST00000369002	ENST00000544264		ChiTaRS3.1			AI471307	SEC63	chr6	108277086	-	CELSR3	chr3	48663170	+
intron-intron	ENST00000460009	ENST00000164024		ChiTaRS3.1			AI471307	SEC63	chr6	108277086	-	CELSR3	chr3	48663170	+
intron-intron	ENST00000460009	ENST00000544264		ChiTaRS3.1			AI471307	SEC63	chr6	108277086	-	CELSR3	chr3	48663170	+
5UTR-3CDS	ENST00000226230	ENST00000444836		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-3CDS	ENST00000226230	ENST00000235329		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-intron	ENST00000226230	ENST00000497302		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-3CDS	ENST00000583381	ENST00000444836		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-3CDS	ENST00000583381	ENST00000235329		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-intron	ENST00000583381	ENST00000497302		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-3CDS	ENST00000582113	ENST00000444836		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-3CDS	ENST00000582113	ENST00000235329		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
5UTR-intron	ENST00000582113	ENST00000497302		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
intron-3CDS	ENST00000336687	ENST00000444836		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
intron-3CDS	ENST00000336687	ENST00000235329		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
intron-intron	ENST00000336687	ENST00000497302		ChiTaRS3.1			BE280687	TMEM97	chr17	26646249	-	MFN2	chr1	12065901	+
intron-intron	ENST00000376511	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000376511	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000484449	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000420949	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549281	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000468706	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000449113	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000547333	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000475926	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000426299	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000551493	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000494003	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000383586	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000548899	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000478528	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000424446	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000552146	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000488513	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000429597	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000549865	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000376511		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000484449		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000420949		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000549281		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000468706		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000449113		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000547333		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000475926		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000426299		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000551493		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000494003		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000383586		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000548899		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000478528		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000424446		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000552146		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000488513		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000429597		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000549865		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
intron-intron	ENST00000482076	ENST00000482076		ChiTaRS3.1			BF315707	PPP1R10	chr6	1902298	+	PPP1R10	chr6	1902250	-
3UTR-intron	ENST00000232607	ENST00000264956		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000232607	ENST00000382674		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000232607	ENST00000509451		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000232607	ENST00000515113		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000413078	ENST00000264956		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000413078	ENST00000382674		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000413078	ENST00000509451		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000413078	ENST00000515113		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000538242	ENST00000264956		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000538242	ENST00000382674		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000538242	ENST00000509451		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000538242	ENST00000515113		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000536109	ENST00000264956		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000536109	ENST00000382674		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000536109	ENST00000509451		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
3UTR-intron	ENST00000536109	ENST00000515113		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
intron-intron	ENST00000498715	ENST00000264956		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
intron-intron	ENST00000498715	ENST00000382674		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
intron-intron	ENST00000498715	ENST00000509451		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
intron-intron	ENST00000498715	ENST00000515113		ChiTaRS3.1			AW800517	UMPS	chr3	124463070	-	EVC	chr4	5784357	-
intron-5UTR	ENST00000364938	ENST00000378609		ChiTaRS3.1			DA645137	SNHG3	chr1	28834672	+	GNB1	chr1	1770678	-
intron-5UTR	ENST00000364938	ENST00000472614		ChiTaRS3.1			DA645137	SNHG3	chr1	28834672	+	GNB1	chr1	1770678	-
intron-intron	ENST00000324262	ENST00000503238		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000358350		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000537810		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000264319		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000507711		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000514783		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000507873		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324262	ENST00000506685		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000503238		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000358350		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000537810		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000264319		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000507711		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000514783		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000507873		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000579847	ENST00000506685		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000503238		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000358350		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000537810		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000264319		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000507711		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000514783		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000507873		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000580229	ENST00000506685		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000503238		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000358350		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000537810		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000264319		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000507711		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000514783		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000507873		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000324301	ENST00000506685		ChiTaRS3.1			BI010777	CNDP2	chr18	72176440	+	FRYL	chr4	48741196	-
intron-intron	ENST00000363315	ENST00000513610		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000507288		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000274203		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000515803		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000427430		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000505695		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000363315	ENST00000512061		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000513610		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000507288		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000274203		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000515803		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000427430		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000505695		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-intron	ENST00000364968	ENST00000512061		ChiTaRS3.1			BX112367	SNHG16	chr17	74556825	+	MYO10	chr5	16911944	-
intron-5UTR	ENST00000402384	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000402384	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000402384	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000402384	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000402384	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000402384	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000402384	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000402384	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000406470	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000406470	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000406470	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000406470	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000406470	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000406470	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000406470	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000406470	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000265577	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000265577	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000265577	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000265577	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000265577	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000265577	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000265577	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000265577	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000396675	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000396675	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000396675	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000396675	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000396675	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000396675	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000396675	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000396675	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000401396	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000401396	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000401396	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000401396	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000401396	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000401396	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000401396	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000401396	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000422063	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000422063	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000422063	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000422063	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000422063	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000422063	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000422063	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000422063	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000407906	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000407906	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000407906	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000407906	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000407906	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000407906	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000407906	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000407906	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000476942	ENST00000402384		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000476942	ENST00000406470		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000476942	ENST00000265577		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000476942	ENST00000396675		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000476942	ENST00000401396		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000476942	ENST00000422063		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-5UTR	ENST00000476942	ENST00000407906		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-intron	ENST00000476942	ENST00000476942		ChiTaRS3.1			AU252467	ICA1	chr7	8158267	-	ICA1	chr7	8275626	-
intron-3UTR	ENST00000186436	ENST00000186436		ChiTaRS3.1			AW629417	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-intron	ENST00000186436	ENST00000425805		ChiTaRS3.1			AW629417	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-3UTR	ENST00000425805	ENST00000186436		ChiTaRS3.1			AW629417	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-intron	ENST00000425805	ENST00000425805		ChiTaRS3.1			AW629417	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-3CDS	ENST00000353411	ENST00000229239		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000353411	ENST00000396856		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000353411	ENST00000396861		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000353411	ENST00000396859		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000353411	ENST00000396858		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522552	ENST00000229239		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522552	ENST00000396856		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522552	ENST00000396861		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522552	ENST00000396859		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522552	ENST00000396858		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000521216	ENST00000229239		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000521216	ENST00000396856		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000521216	ENST00000396861		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000521216	ENST00000396859		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000521216	ENST00000396858		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000517625	ENST00000229239		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000517625	ENST00000396856		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000517625	ENST00000396861		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000517625	ENST00000396859		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000517625	ENST00000396858		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522855	ENST00000229239		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522855	ENST00000396856		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522855	ENST00000396861		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522855	ENST00000396859		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-3CDS	ENST00000522855	ENST00000396858		ChiTaRS3.1			CV312017	SKP1	chr5	133497575	+	GAPDH	chr12	6646910	+
intron-intron	ENST00000539563	ENST00000539563		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-3UTR	ENST00000539563	ENST00000490035		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-intron	ENST00000539563	ENST00000498645		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-intron	ENST00000490035	ENST00000539563		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-3UTR	ENST00000490035	ENST00000490035		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-intron	ENST00000490035	ENST00000498645		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-intron	ENST00000498645	ENST00000539563		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-3UTR	ENST00000498645	ENST00000490035		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-intron	ENST00000498645	ENST00000498645		ChiTaRS3.1			BE770467	LSAMP	chr3	115527614	+	LSAMP	chr3	115527730	-
intron-3UTR	ENST00000295633	ENST00000256496		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000295633	ENST00000419534		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000295633	ENST00000468010		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000424703	ENST00000256496		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000424703	ENST00000419534		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000424703	ENST00000468010		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000485968	ENST00000256496		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000485968	ENST00000419534		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-3UTR	ENST00000485968	ENST00000468010		ChiTaRS3.1			D89937	FSTL1	chr3	120115053	-	ARL8B	chr3	5220600	-
intron-intron	ENST00000267229	ENST00000548589		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000267229	ENST00000552699		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000267229	ENST00000267115		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000267229	ENST00000549385		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000267229	ENST00000423828		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000267229	ENST00000395006		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-5UTR	ENST00000267229	ENST00000547798		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000548589		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000552699		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000267115		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000549385		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000423828		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438737	ENST00000395006		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-5UTR	ENST00000438737	ENST00000547798		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000548589		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000552699		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000267115		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000549385		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000423828		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000438724	ENST00000395006		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-5UTR	ENST00000438724	ENST00000547798		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000548589		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000552699		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000267115		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000549385		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000423828		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-intron	ENST00000461008	ENST00000395006		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
intron-5UTR	ENST00000461008	ENST00000547798		ChiTaRS3.1			AI133497	RBM26	chr13	79922197	-	TMBIM6	chr12	50146799	+
Frame-shit	ENST00000261891	ENST00000178640		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000560591		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000395476		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000354498		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000261891	ENST00000340972		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000457488	ENST00000178640		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000560591		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000395476		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000354498		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000457488	ENST00000340972		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
In-frame	ENST00000558069	ENST00000178640		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000560591		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000395476		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000354498		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5CDS-intron	ENST00000558069	ENST00000340972		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-3CDS	ENST00000558482	ENST00000178640		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000560591		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000395476		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000354498		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
5UTR-intron	ENST00000558482	ENST00000340972		ChiTaRS3.1			AW013877	DAPK2	chr15	64332368	-	MAP2K5	chr15	68098982	+
intron-3CDS	ENST00000502271	ENST00000415930		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000502271	ENST00000356487		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000502271	ENST00000586425		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000504924	ENST00000415930		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000504924	ENST00000356487		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000504924	ENST00000586425		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000510591	ENST00000415930		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000510591	ENST00000356487		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000510591	ENST00000586425		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000507646	ENST00000415930		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000507646	ENST00000356487		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000507646	ENST00000586425		ChiTaRS3.1			BQ316137	ARL15	chr5	53580292	+	GPI	chr19	34884819	+
intron-3CDS	ENST00000261973	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000261973	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000261973	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000261973	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000261973	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000261973	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000540173	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000540173	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000540173	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000540173	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000540173	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000540173	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000527432	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000527432	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000527432	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000527432	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000527432	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000527432	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000525321	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000525321	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000525321	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000525321	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000525321	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000525321	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000526754	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000526754	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000526754	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000526754	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000526754	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000526754	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000532483	ENST00000261973		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000532483	ENST00000540173		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000532483	ENST00000527432		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000532483	ENST00000525321		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-3CDS	ENST00000532483	ENST00000526754		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
intron-intron	ENST00000532483	ENST00000532483		ChiTaRS3.1			BF063717	RBM25	chr14	73555813	-	RBM25	chr14	73563738	-
5CDS-intron	ENST00000262305	ENST00000262305		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000457159		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000450428		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000262305		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000457159		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000450428		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000262305		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000457159		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000450428		ChiTaRS3.1			BM908747	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
intron-intron	ENST00000441250	ENST00000321685		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000441250	ENST00000355040		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000441250	ENST00000321460		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000279206	ENST00000321685		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000279206	ENST00000355040		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000279206	ENST00000321460		ChiTaRS3.1			DA570057	NUDT22	chr11	63998341	-	DNAJC4	chr11	64001821	-
intron-intron	ENST00000256429	ENST00000545844		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000567887		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000372915		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000361689		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000539005		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000317713		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000564288		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000289893		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000536367		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000484793		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000602421		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000256429	ENST00000476350		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000545844		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000567887		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000372915		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000361689		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000539005		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000317713		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000564288		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000289893		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000536367		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000484793		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000602421		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000579025	ENST00000476350		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000545844		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000567887		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000372915		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000361689		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000539005		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000317713		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000564288		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000289893		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000536367		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000484793		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000602421		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000398398	ENST00000476350		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000545844		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000567887		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000372915		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000361689		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000539005		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000317713		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000564288		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000289893		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000536367		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000484793		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000602421		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000583046	ENST00000476350		ChiTaRS3.1			BQ359497	MBD2	chr18	51692453	-	MACF1	chr1	39927054	-
intron-intron	ENST00000354891	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000354891	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000354891	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000354891	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000354891	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000354891	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000354891	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-3UTR	ENST00000322350	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
3UTR-intron	ENST00000322350	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000336740	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000336740	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000397202	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397202	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000397210	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000397210	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000506135	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000506135	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000354891		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-3UTR	ENST00000514476	ENST00000322350		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000336740		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000397202		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000397210		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000506135		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
intron-intron	ENST00000514476	ENST00000514476		ChiTaRS3.1			AL048127	EGFLAM	chr5	38464790	-	EGFLAM	chr5	38464757	+
Frame-shit	ENST00000327827	ENST00000327827		ChiTaRS3.1			BE081997	C16orf72	chr16	9210690	+	C16orf72	chr16	9197090	+
intron-intron	ENST00000463381	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000463381	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000473312	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000473312	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000479901	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000479901	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000397238	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000397238	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000476375	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000476375	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000335367	ENST00000498438		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
intron-intron	ENST00000335367	ENST00000249504		ChiTaRS3.1			BM807507	AGAP3	chr7	150783772	+	HOXD11	chr2	176972333	-
5UTR-3CDS	ENST00000594012	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000594012	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000594012	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000594012	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-intron	ENST00000594012	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000595461	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000595461	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000595461	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000595461	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-intron	ENST00000595461	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000598381	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000598381	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000598381	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000598381	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-intron	ENST00000598381	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000598288	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000598288	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000598288	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000598288	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-intron	ENST00000598288	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000354959	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000354959	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000354959	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-3CDS	ENST00000354959	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-intron	ENST00000354959	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000599414	ENST00000529230		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000599414	ENST00000415402		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000599414	ENST00000312055		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-3CDS	ENST00000599414	ENST00000354558		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
5UTR-intron	ENST00000599414	ENST00000532321		ChiTaRS3.1			BQ432517	ZNF43	chr19	22034707	-	CKAP5	chr11	46782335	-
intron-intron	ENST00000444746	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000444746		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000453091		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000428287		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000243326		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000430328		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000433166		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000457745		ChiTaRS3.1			AW937387	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
In-frame	ENST00000254260	ENST00000331925		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
Frame-shit	ENST00000254260	ENST00000573283		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
In-frame	ENST00000254260	ENST00000575842		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
In-frame	ENST00000254260	ENST00000575087		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000400226	ENST00000331925		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000400226	ENST00000573283		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000400226	ENST00000575842		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000400226	ENST00000575087		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000588683	ENST00000331925		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000588683	ENST00000573283		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000588683	ENST00000575842		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
intron-3CDS	ENST00000588683	ENST00000575087		ChiTaRS3.1			BU595517	RHPN2	chr19	33469504	-	ACTG1	chr17	79477724	-
3UTR-3UTR	ENST00000379887	ENST00000379887		ChiTaRS3.1			BM462307	ARIH1	chr15	72877992	-	ARIH1	chr15	72878137	+
3UTR-intron	ENST00000379887	ENST00000562891		ChiTaRS3.1			BM462307	ARIH1	chr15	72877992	-	ARIH1	chr15	72878137	+
intron-3UTR	ENST00000562891	ENST00000379887		ChiTaRS3.1			BM462307	ARIH1	chr15	72877992	-	ARIH1	chr15	72878137	+
intron-intron	ENST00000562891	ENST00000562891		ChiTaRS3.1			BM462307	ARIH1	chr15	72877992	-	ARIH1	chr15	72878137	+
5CDS-intron	ENST00000311672	ENST00000262741		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000372006		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000340332		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000420542		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000354242		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000540385		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000423209		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
5CDS-intron	ENST00000311672	ENST00000488808		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000262741		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000372006		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000340332		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000420542		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000354242		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000540385		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000423209		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-intron	ENST00000486951	ENST00000488808		ChiTaRS3.1			BE515277	UQCRH	chr1	46775989	+	PIK3R3	chr1	46519492	+
intron-3CDS	ENST00000429408	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000429408	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000429408	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000426835	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000426835	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000426835	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000446159	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000446159	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000446159	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000414797	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000414797	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000414797	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000422093	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000422093	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000422093	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000451809	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000451809	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000451809	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000448195	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000448195	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000448195	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000424477	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000424477	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000424477	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000448636	ENST00000296702		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3CDS	ENST00000448636	ENST00000394421		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-intron	ENST00000448636	ENST00000509787		ChiTaRS3.1			BQ356267	MAGI2-AS3	chr7	79089630	-	TCERG1	chr5	145890019	+
intron-3UTR	ENST00000526148	ENST00000307630		ChiTaRS3.1			AW889737	EIF4G2	chr11	10822384	+	YWHAG	chr7	75958632	-
intron-3UTR	ENST00000525681	ENST00000307630		ChiTaRS3.1			AW889737	EIF4G2	chr11	10822384	+	YWHAG	chr7	75958632	-
intron-3UTR	ENST00000339995	ENST00000307630		ChiTaRS3.1			AW889737	EIF4G2	chr11	10822384	+	YWHAG	chr7	75958632	-
intron-3UTR	ENST00000396525	ENST00000307630		ChiTaRS3.1			AW889737	EIF4G2	chr11	10822384	+	YWHAG	chr7	75958632	-
intron-3UTR	ENST00000525995	ENST00000307630		ChiTaRS3.1			AW889737	EIF4G2	chr11	10822384	+	YWHAG	chr7	75958632	-
intron-intron	ENST00000359062	ENST00000361234		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000359062	ENST00000392465		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000359062	ENST00000392464		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000359062	ENST00000555076		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000544307	ENST00000361234		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000544307	ENST00000392465		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000544307	ENST00000392464		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000544307	ENST00000555076		ChiTaRS3.1			BF755147	PDE3A	chr12	20749016	-	RNF34	chr12	121838985	+
intron-intron	ENST00000318037	ENST00000318037		ChiTaRS3.1			AA502677	RNF168	chr3	196200759	-	RNF168	chr3	196200828	+
5CDS-intron	ENST00000229390	ENST00000551765		ChiTaRS3.1			BG750277	SRSF9	chr12	120907225	-	GATC	chr12	120899968	+
3UTR-3UTR	ENST00000373458	ENST00000307750		ChiTaRS3.1			T05387	VSTM2L	chr20	36572967	-	ZBTB5	chr9	37439665	+
3UTR-3UTR	ENST00000373461	ENST00000307750		ChiTaRS3.1			T05387	VSTM2L	chr20	36572967	-	ZBTB5	chr9	37439665	+
intron-3UTR	ENST00000373459	ENST00000307750		ChiTaRS3.1			T05387	VSTM2L	chr20	36572967	-	ZBTB5	chr9	37439665	+
3UTR-intron	ENST00000529193	ENST00000541428		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000379454		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000523897		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000522919		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000356457		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000518068		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000517903		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000445642		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000517847		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000522835		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000517856		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000389204		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000522603		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000379449		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000529193	ENST00000517661		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000541428		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000379454		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000523897		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000522919		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000356457		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000518068		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000517903		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000445642		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000517847		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000522835		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000517856		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000389204		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000522603		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000379449		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
3UTR-intron	ENST00000288400	ENST00000517661		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000541428		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000379454		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000523897		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000522919		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000356457		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000518068		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000517903		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000445642		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000517847		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000522835		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000517856		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000389204		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000522603		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000379449		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000534616	ENST00000517661		ChiTaRS3.1			BC014097	CREB3L1	chr11	46342643	+	ASPH	chr8	62492380	+
intron-intron	ENST00000358763	ENST00000358763		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000358763	ENST00000332840		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000358763	ENST00000467095		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000332840	ENST00000358763		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000332840	ENST00000332840		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000332840	ENST00000467095		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000467095	ENST00000358763		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000467095	ENST00000332840		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
intron-intron	ENST00000467095	ENST00000467095		ChiTaRS3.1			DW447487	SYN3	chr22	33199531	+	SYN3	chr22	33198339	+
3UTR-3UTR	ENST00000371021	ENST00000371021		ChiTaRS3.1			CA313947	FRAT1	chr10	99081555	-	FRAT1	chr10	99081283	+
3UTR-intron	ENST00000371021	ENST00000490980		ChiTaRS3.1			CA313947	FRAT1	chr10	99081555	-	FRAT1	chr10	99081283	+
3UTR-3UTR	ENST00000490980	ENST00000371021		ChiTaRS3.1			CA313947	FRAT1	chr10	99081555	-	FRAT1	chr10	99081283	+
3UTR-intron	ENST00000490980	ENST00000490980		ChiTaRS3.1			CA313947	FRAT1	chr10	99081555	-	FRAT1	chr10	99081283	+
intron-3UTR	ENST00000476320	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-3UTR	ENST00000481533	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-3UTR	ENST00000413013	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-3UTR	ENST00000394990	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-3UTR	ENST00000335352	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-3UTR	ENST00000468145	ENST00000340857		ChiTaRS3.1			CD364437	C6orf1	chr6	34214474	+	H1F0	chr22	38202208	-
intron-intron	ENST00000368655	ENST00000344836		ChiTaRS3.1			BG979147	GATAD2B	chr1	153789880	-	USP7	chr16	9022365	+
intron-intron	ENST00000368655	ENST00000381886		ChiTaRS3.1			BG979147	GATAD2B	chr1	153789880	-	USP7	chr16	9022365	+
intron-intron	ENST00000368655	ENST00000535863		ChiTaRS3.1			BG979147	GATAD2B	chr1	153789880	-	USP7	chr16	9022365	+
intron-intron	ENST00000368655	ENST00000566224		ChiTaRS3.1			BG979147	GATAD2B	chr1	153789880	-	USP7	chr16	9022365	+
intron-3UTR	ENST00000262030	ENST00000262030		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-3UTR	ENST00000262030	ENST00000552919		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-intron	ENST00000262030	ENST00000550162		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-3UTR	ENST00000552919	ENST00000262030		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-3UTR	ENST00000552919	ENST00000552919		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-intron	ENST00000552919	ENST00000550162		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-3UTR	ENST00000550162	ENST00000262030		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-3UTR	ENST00000550162	ENST00000552919		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-intron	ENST00000550162	ENST00000550162		ChiTaRS3.1			BG258137	ATP5B	chr12	57037370	+	ATP5B	chr12	57032064	-
intron-intron	ENST00000409558	ENST00000360839		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000409558	ENST00000297183		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000409558	ENST00000394723		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000409558	ENST00000394722		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000409558	ENST00000462121		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000409558	ENST00000544120		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000360839		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000297183		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000394723		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000394722		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000462121		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000272322	ENST00000544120		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000360839		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000297183		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000394723		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000394722		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000462121		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000354504	ENST00000544120		ChiTaRS3.1			BF681377	VPS54	chr2	64148899	-	ANKHD1	chr5	139865905	+
intron-intron	ENST00000335512	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335512	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000539837	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000470987	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000291539	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398236	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398229	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398234	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398232	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398227	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398225	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000380328	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000328862	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000335440	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000398224	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000360284		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000545748		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000550082		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000547206		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000243050		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000394825		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000394824		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000349112	ENST00000548232		ChiTaRS3.1			BI045347	PDE9A	chr21	44110439	+	NR4A1	chr12	52446067	+
intron-intron	ENST00000483195	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000483195	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000394019	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000423644	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000346834	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000359484	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000357822	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000358683	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377632	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000483195		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000394019		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000423644		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000346834		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000359484		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000357822		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000358683		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000377632		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-intron	ENST00000377634	ENST00000377634		ChiTaRS3.1			AA713537	SLC4A5	chr2	74590187	-	SLC4A5	chr2	74588699	+
intron-5UTR	ENST00000474034	ENST00000392038		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
intron-intron	ENST00000474034	ENST00000424901		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
intron-intron	ENST00000474034	ENST00000311278		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
intron-intron	ENST00000474034	ENST00000579047		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
intron-intron	ENST00000474034	ENST00000581582		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
3UTR-5UTR	ENST00000282928	ENST00000392038		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
3UTR-intron	ENST00000282928	ENST00000424901		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
3UTR-intron	ENST00000282928	ENST00000311278		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
3UTR-intron	ENST00000282928	ENST00000579047		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
3UTR-intron	ENST00000282928	ENST00000581582		ChiTaRS3.1			DA742787	ZIC1	chr3	147132326	-	AKT2	chr19	40771260	-
Frame-shit	ENST00000409478	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409478	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409478	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409478	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409478	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
5CDS-intron	ENST00000409478	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000329971	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000329971	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000329971	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000329971	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000329971	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
5CDS-intron	ENST00000329971	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000264160	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000264160	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000264160	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000264160	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000264160	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
5CDS-intron	ENST00000264160	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000410054	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000410054	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000410054	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000410054	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000410054	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
5CDS-intron	ENST00000410054	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409606	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409606	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409606	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409606	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
Frame-shit	ENST00000409606	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
5CDS-intron	ENST00000409606	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-3CDS	ENST00000443537	ENST00000409478		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-3CDS	ENST00000443537	ENST00000329971		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-3CDS	ENST00000443537	ENST00000264160		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-3CDS	ENST00000443537	ENST00000410054		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-3CDS	ENST00000443537	ENST00000409606		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-intron	ENST00000443537	ENST00000443537		ChiTaRS3.1			BF839117	R3HDM1	chr2	136437753	-	R3HDM1	chr2	136409331	+
intron-5UTR	ENST00000225308	ENST00000394331		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-intron	ENST00000225308	ENST00000243108		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-5UTR	ENST00000377095	ENST00000394331		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-intron	ENST00000377095	ENST00000243108		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-5UTR	ENST00000590194	ENST00000394331		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-intron	ENST00000590194	ENST00000243108		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-5UTR	ENST00000586016	ENST00000394331		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-intron	ENST00000586016	ENST00000243108		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-5UTR	ENST00000537904	ENST00000394331		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-intron	ENST00000537904	ENST00000243108		ChiTaRS3.1			BF034547	SLC25A39	chr17	42397593	+	HOXC6	chr12	54410692	+
intron-3CDS	ENST00000406775	ENST00000380527		ChiTaRS3.1			CK431057	AUTS2	chr7	69107043	+	RRAGA	chr9	19050562	+
intron-3CDS	ENST00000342771	ENST00000380527		ChiTaRS3.1			CK431057	AUTS2	chr7	69107043	+	RRAGA	chr9	19050562	+
intron-3CDS	ENST00000403018	ENST00000380527		ChiTaRS3.1			CK431057	AUTS2	chr7	69107043	+	RRAGA	chr9	19050562	+
intron-3CDS	ENST00000489774	ENST00000380527		ChiTaRS3.1			CK431057	AUTS2	chr7	69107043	+	RRAGA	chr9	19050562	+
Frame-shit	ENST00000279230	ENST00000252137		ChiTaRS3.1			AI968387	PLCB3	chr11	64034957	-	DGCR14	chr22	19126746	+
Frame-shit	ENST00000540288	ENST00000252137		ChiTaRS3.1			AI968387	PLCB3	chr11	64034957	-	DGCR14	chr22	19126746	+
In-frame	ENST00000325234	ENST00000252137		ChiTaRS3.1			AI968387	PLCB3	chr11	64034957	-	DGCR14	chr22	19126746	+
intron-3UTR	ENST00000357325	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000357325	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000357325	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000357325	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000357325	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000357325	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000537739	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000537739	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000537739	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000537739	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000537739	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000537739	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368209	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368209	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368209	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000368209	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000368209	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000368209	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000465180	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000465180	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000465180	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000465180	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000465180	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000465180	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000416666	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000416666	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000416666	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000416666	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000416666	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000416666	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368206	ENST00000357325		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368206	ENST00000537739		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-3UTR	ENST00000368206	ENST00000368209		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-5UTR	ENST00000368206	ENST00000465180		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000368206	ENST00000416666		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
intron-intron	ENST00000368206	ENST00000368206		ChiTaRS3.1			AA291597	HDGF	chr1	156712013	+	HDGF	chr1	156712557	-
Frame-shit	ENST00000308664	ENST00000209873		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000308664	ENST00000394384		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000308664	ENST00000550286		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
5CDS-intron	ENST00000308664	ENST00000549983		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000395494	ENST00000209873		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000395494	ENST00000394384		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000395494	ENST00000550286		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
5CDS-intron	ENST00000395494	ENST00000549983		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000539276	ENST00000209873		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000539276	ENST00000394384		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
Frame-shit	ENST00000539276	ENST00000550286		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
5CDS-intron	ENST00000539276	ENST00000549983		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000550248	ENST00000209873		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000550248	ENST00000394384		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000550248	ENST00000550286		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-intron	ENST00000550248	ENST00000549983		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000552636	ENST00000209873		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000552636	ENST00000394384		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-3CDS	ENST00000552636	ENST00000550286		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-intron	ENST00000552636	ENST00000549983		ChiTaRS3.1			BQ327397	ATP2A2	chr12	110783843	-	AAAS	chr12	53702079	+
intron-intron	ENST00000396364	ENST00000396364		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-3UTR	ENST00000396364	ENST00000377270		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000396364	ENST00000396366		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000396364	ENST00000498653		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000377270	ENST00000396364		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-3UTR	ENST00000377270	ENST00000377270		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000377270	ENST00000396366		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000377270	ENST00000498653		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000396366	ENST00000396364		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-3UTR	ENST00000396366	ENST00000377270		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000396366	ENST00000396366		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000396366	ENST00000498653		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000498653	ENST00000396364		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-3UTR	ENST00000498653	ENST00000377270		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000498653	ENST00000396366		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000498653	ENST00000498653		ChiTaRS3.1			BM790417	FXN	chr9	71691727	+	FXN	chr9	71688985	+
intron-intron	ENST00000496112	ENST00000496112		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-intron	ENST00000496112	ENST00000447123		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-3UTR	ENST00000496112	ENST00000223369		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-intron	ENST00000447123	ENST00000496112		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-intron	ENST00000447123	ENST00000447123		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-3UTR	ENST00000447123	ENST00000223369		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
3UTR-intron	ENST00000223369	ENST00000496112		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
3UTR-intron	ENST00000223369	ENST00000447123		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
3UTR-3UTR	ENST00000223369	ENST00000223369		ChiTaRS3.1			AW176577	YKT6	chr7	44252928	+	YKT6	chr7	44252854	-
intron-intron	ENST00000502271	ENST00000502271		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000502271	ENST00000504924		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000502271	ENST00000510591		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000502271	ENST00000507646		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000504924	ENST00000502271		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000504924	ENST00000504924		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000504924	ENST00000510591		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000504924	ENST00000507646		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000510591	ENST00000502271		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000510591	ENST00000504924		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000510591	ENST00000510591		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000510591	ENST00000507646		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000507646	ENST00000502271		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000507646	ENST00000504924		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000507646	ENST00000510591		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-intron	ENST00000507646	ENST00000507646		ChiTaRS3.1			CV370307	ARL15	chr5	53289935	+	ARL15	chr5	53289721	-
intron-3UTR	ENST00000339438	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000339438	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000339438	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000339438	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000339438	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000339438	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000339438	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000339438	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000438362	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000438362	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000438362	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000358528	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000358528	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000358528	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000261443	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000261443	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000261443	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000530886	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000530886	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000530886	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000369530	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000369530	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000369530	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000483407	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000483407	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000483407	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000339438		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000438362		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000358528		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000261443		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000530886		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-3UTR	ENST00000534699	ENST00000369530		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-5UTR	ENST00000534699	ENST00000483407		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
intron-intron	ENST00000534699	ENST00000534699		ChiTaRS3.1			BF752097	CSDE1	chr1	115260051	-	CSDE1	chr1	115260458	+
5CDS-intron	ENST00000344691	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000344691	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000344691	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000325074	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000325074	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000325074	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000437180	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000437180	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000437180	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000300305	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000300305	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000300305	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000399240	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000399240	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000399240	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000486278	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000486278	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000486278	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000494829	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000494829	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-intron	ENST00000494829	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000358356	ENST00000301295		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000358356	ENST00000346986		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
5CDS-intron	ENST00000358356	ENST00000587891		ChiTaRS3.1			AF312387	RUNX1	chr21	36206707	-	NLRP4	chr19	56392780	-
intron-3UTR	ENST00000445145	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000445145	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000445145	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000445145	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000445145	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000445145	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000445145	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000388767	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000388767	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000388767	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000388767	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000388767	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000388767	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000388767	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000345068	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000345068	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000345068	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000345068	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000345068	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000345068	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000345068	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000580212	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000580212	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000580212	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000580212	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000580212	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000580212	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000580212	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000456796	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000456796	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000456796	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000456796	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000456796	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000456796	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000456796	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000584969	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000584969	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000584969	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000584969	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000584969	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000584969	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000584969	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000577909	ENST00000445145		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000577909	ENST00000388767		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000577909	ENST00000345068		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000577909	ENST00000580212		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-3UTR	ENST00000577909	ENST00000456796		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000577909	ENST00000584969		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000577909	ENST00000577909		ChiTaRS3.1			CF454387	CORO6	chr17	27942721	-	CORO6	chr17	27942744	+
intron-intron	ENST00000362507	ENST00000362507		ChiTaRS3.1			AI653367	RNU5F-1	chr1	220162069	+	RNU5F-1	chr1	220156576	+
intron-intron	ENST00000228438	ENST00000460734		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000228438	ENST00000539173		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-intron	ENST00000228438	ENST00000437626		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-intron	ENST00000228438	ENST00000389863		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000228438	ENST00000348831		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000228438	ENST00000360697		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-intron	ENST00000538152	ENST00000460734		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000538152	ENST00000539173		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-intron	ENST00000538152	ENST00000437626		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-intron	ENST00000538152	ENST00000389863		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000538152	ENST00000348831		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3UTR	ENST00000538152	ENST00000360697		ChiTaRS3.1			BQ420467	CLEC2B	chr12	10010153	+	ADARB1	chr21	46644489	+
intron-3CDS	ENST00000401884	ENST00000401884		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000401884	ENST00000342631		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000401884	ENST00000405547		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000401884	ENST00000310397		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-intron	ENST00000401884	ENST00000469006		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000342631	ENST00000401884		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000342631	ENST00000342631		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000342631	ENST00000405547		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000342631	ENST00000310397		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-intron	ENST00000342631	ENST00000469006		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000405547	ENST00000401884		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000405547	ENST00000342631		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000405547	ENST00000405547		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000405547	ENST00000310397		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-intron	ENST00000405547	ENST00000469006		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000310397	ENST00000401884		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000310397	ENST00000342631		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000310397	ENST00000405547		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000310397	ENST00000310397		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-intron	ENST00000310397	ENST00000469006		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000469006	ENST00000401884		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000469006	ENST00000342631		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000469006	ENST00000405547		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-3CDS	ENST00000469006	ENST00000310397		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
intron-intron	ENST00000469006	ENST00000469006		ChiTaRS3.1			BQ380107	SNED1	chr2	241993219	-	SNED1	chr2	241976668	+
Frame-shit	ENST00000375312	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375312	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000375312	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000360383	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000360383	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000356221	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000356221	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375310	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000375310	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000375308	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000375308	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252457	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000252457	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
Frame-shit	ENST00000252458	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000252458	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000375312		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000360383		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000356221		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000375310		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000375308		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000252457		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-3CDS	ENST00000461716	ENST00000252458		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
intron-intron	ENST00000461716	ENST00000461716		ChiTaRS3.1			BI761697	CDC16	chr13	115008749	-	CDC16	chr13	115008775	+
5CDS-intron	ENST00000339446	ENST00000324238		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
5CDS-intron	ENST00000339446	ENST00000544695		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
5CDS-intron	ENST00000339446	ENST00000577725		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
5CDS-intron	ENST00000528572	ENST00000324238		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
5CDS-intron	ENST00000528572	ENST00000544695		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
5CDS-intron	ENST00000528572	ENST00000577725		ChiTaRS3.1			BE503147	C11orf96	chr11	43964667	+	CRLF3	chr17	29119807	-
Frame-shit	ENST00000340384	ENST00000340384		ChiTaRS3.1			BQ361837	TUBB4B	chr9	140137092	+	TUBB4B	chr9	140137333	-
3UTR-3UTR	ENST00000420502	ENST00000420502		ChiTaRS3.1			BQ638957	SLC38A3	chr3	50257549	+	SLC38A3	chr3	50252988	+
intron-3CDS	ENST00000379611	ENST00000421182		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000379611	ENST00000357867		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000379611	ENST00000323926		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000379611	ENST00000336916		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000379611	ENST00000354785		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000357009		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000346544		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000345488		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000359671		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000446046		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000443816		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000432072		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000379611	ENST00000356005		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000379611	ENST00000490833		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000379611	ENST00000426059		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000512261	ENST00000421182		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000512261	ENST00000357867		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000512261	ENST00000323926		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000512261	ENST00000336916		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000512261	ENST00000354785		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000357009		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000346544		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000345488		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000359671		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000446046		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000443816		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000432072		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000512261	ENST00000356005		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000512261	ENST00000490833		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000512261	ENST00000426059		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000506442	ENST00000421182		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000506442	ENST00000357867		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000506442	ENST00000323926		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000506442	ENST00000336916		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000506442	ENST00000354785		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000357009		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000346544		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000345488		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000359671		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000446046		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000443816		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000432072		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000506442	ENST00000356005		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000506442	ENST00000490833		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000506442	ENST00000426059		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000395557	ENST00000421182		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000395557	ENST00000357867		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000395557	ENST00000323926		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000395557	ENST00000336916		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000395557	ENST00000354785		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000357009		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000346544		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000345488		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000359671		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000446046		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000443816		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000432072		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000395557	ENST00000356005		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000395557	ENST00000490833		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000395557	ENST00000426059		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000503027	ENST00000421182		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000503027	ENST00000357867		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000503027	ENST00000323926		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000503027	ENST00000336916		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3CDS	ENST00000503027	ENST00000354785		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000357009		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000346544		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000345488		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000359671		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000446046		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000443816		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000432072		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-3UTR	ENST00000503027	ENST00000356005		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000503027	ENST00000490833		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000503027	ENST00000426059		ChiTaRS3.1			CA418157	CCDC112	chr5	114611702	-	FN1	chr2	216230296	-
intron-intron	ENST00000261438	ENST00000330597		ChiTaRS3.1			AF116717	KLF3	chr4	38676413	-	HBG1	chr11	5275919	-
intron-intron	ENST00000514033	ENST00000330597		ChiTaRS3.1			AF116717	KLF3	chr4	38676413	-	HBG1	chr11	5275919	-
intron-3CDS	ENST00000589037	ENST00000222145		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000589037	ENST00000594232		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000253788	ENST00000222145		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000253788	ENST00000594232		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-3CDS	ENST00000589913	ENST00000222145		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-intron	ENST00000589913	ENST00000594232		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000590864	ENST00000222145		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000590864	ENST00000594232		ChiTaRS3.1			CV327307	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000538546	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000538546	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000535623	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000535623	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000535011	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000535011	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000542996	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000542996	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000249364	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000249364	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000449187	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
3UTR-intron	ENST00000449187	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-intron	ENST00000479257	ENST00000449187		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-intron	ENST00000479257	ENST00000479257		ChiTaRS3.1			BE140637	CALU	chr7	128410475	-	CALU	chr7	128411244	-
intron-3UTR	ENST00000324727	ENST00000361866		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
intron-3UTR	ENST00000324727	ENST00000498614		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
intron-3UTR	ENST00000423160	ENST00000361866		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
intron-3UTR	ENST00000423160	ENST00000498614		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
intron-3UTR	ENST00000529878	ENST00000361866		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
intron-3UTR	ENST00000529878	ENST00000498614		ChiTaRS3.1			BF882327	SCN4B	chr11	118013815	-	COL6A1	chr21	47424327	+
3UTR-3UTR	ENST00000453228	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000453228	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000453228	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000453228	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000453228	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000453228	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000453228	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000453228	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000354410	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000354410	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000354410	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000354410	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000354410	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000354410	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000354410	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000354410	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558856	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558856	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558856	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558856	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558856	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558856	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558856	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558856	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558812	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558812	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558812	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558812	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558812	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000558812	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558812	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000558812	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000338042	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000338042	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000338042	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000338042	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000338042	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000338042	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000338042	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000338042	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000557785	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000557785	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000557785	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000557785	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000557785	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-intron	ENST00000557785	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000557785	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
intron-3UTR	ENST00000557785	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000449277	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000449277	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000449277	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000449277	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000449277	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000449277	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000449277	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000449277	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000557942	ENST00000453228		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000557942	ENST00000354410		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000557942	ENST00000558856		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000557942	ENST00000558812		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000557942	ENST00000338042		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-intron	ENST00000557942	ENST00000557785		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000557942	ENST00000449277		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3UTR	ENST00000557942	ENST00000557942		ChiTaRS3.1			CA944617	MEF2A	chr15	100256495	-	MEF2A	chr15	100256358	+
3UTR-3CDS	ENST00000377045	ENST00000377045		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000377045	ENST00000290277		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000377045	ENST00000377039		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000377045	ENST00000470206		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-3CDS	ENST00000290277	ENST00000377045		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000290277	ENST00000290277		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000290277	ENST00000377039		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000290277	ENST00000470206		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-3CDS	ENST00000377039	ENST00000377045		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000377039	ENST00000290277		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000377039	ENST00000377039		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000377039	ENST00000470206		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-3CDS	ENST00000470206	ENST00000377045		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000470206	ENST00000290277		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000470206	ENST00000377039		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
3UTR-intron	ENST00000470206	ENST00000470206		ChiTaRS3.1			BE068877	ARAF	chrX	47430981	+	ARAF	chrX	47429016	+
intron-intron	ENST00000300584	ENST00000536985		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000379789		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000540253		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000317350		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000379785		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000379782		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000360521		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000300584	ENST00000379775		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000536985		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000379789		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000540253		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000317350		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000379785		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000379782		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000360521		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000409931	ENST00000379775		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000536985		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000379789		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000540253		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000317350		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000379785		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000379782		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000360521		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000492078	ENST00000379775		ChiTaRS3.1			BF359367	TBC1D2B	chr15	78339909	-	PFKFB3	chr10	6224213	-
intron-intron	ENST00000452313	ENST00000452313		ChiTaRS3.1			BX956077	NPIPB7	chr16	28835151	-	NPIPB7	chr16	28836685	+
intron-3UTR	ENST00000327443	ENST00000261530		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000556675		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000557263		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000557207		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-3UTR	ENST00000327443	ENST00000312858		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000556663		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000327443	ENST00000553588		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-3UTR	ENST00000426431	ENST00000261530		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000556675		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000557263		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000557207		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-3UTR	ENST00000426431	ENST00000312858		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000556663		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
3UTR-intron	ENST00000426431	ENST00000553588		ChiTaRS3.1			AW969437	SP1	chr12	53806734	-	GPATCH2L	chr14	76668877	-
intron-intron	ENST00000287437	ENST00000287437		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000287437	ENST00000522563		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000287437	ENST00000517315		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000287437	ENST00000521460		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000522563	ENST00000287437		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000522563	ENST00000522563		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000522563	ENST00000517315		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000522563	ENST00000521460		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000517315	ENST00000287437		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000517315	ENST00000522563		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000517315	ENST00000517315		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000517315	ENST00000521460		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000521460	ENST00000287437		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000521460	ENST00000522563		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000521460	ENST00000517315		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-intron	ENST00000521460	ENST00000521460		ChiTaRS3.1			AA746867	NSMCE2	chr8	126353642	+	NSMCE2	chr8	126354141	-
intron-3CDS	ENST00000435504	ENST00000435504		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000435504	ENST00000336112		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000435504	ENST00000272341		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000435504	ENST00000404843		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000435504	ENST00000497092		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000336112	ENST00000435504		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000336112	ENST00000336112		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000336112	ENST00000272341		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000336112	ENST00000404843		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000336112	ENST00000497092		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000272341	ENST00000435504		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000272341	ENST00000336112		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000272341	ENST00000272341		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000272341	ENST00000404843		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000272341	ENST00000497092		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000404843	ENST00000435504		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000404843	ENST00000336112		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000404843	ENST00000272341		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000404843	ENST00000404843		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000404843	ENST00000497092		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000497092	ENST00000435504		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000497092	ENST00000336112		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000497092	ENST00000272341		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000497092	ENST00000404843		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-intron	ENST00000497092	ENST00000497092		ChiTaRS3.1			AA234387	ASXL2	chr2	25963992	-	ASXL2	chr2	25966352	-
intron-3CDS	ENST00000545990	ENST00000545990		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-3CDS	ENST00000545990	ENST00000228850		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-intron	ENST00000545990	ENST00000544636		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-3CDS	ENST00000228850	ENST00000545990		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-3CDS	ENST00000228850	ENST00000228850		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-intron	ENST00000228850	ENST00000544636		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-3CDS	ENST00000544636	ENST00000545990		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-3CDS	ENST00000544636	ENST00000228850		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-intron	ENST00000544636	ENST00000544636		ChiTaRS3.1			AW512277	AKAP3	chr12	4724791	+	AKAP3	chr12	4725062	-
intron-intron	ENST00000544892	ENST00000438316		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000544892	ENST00000466508		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000544892	ENST00000055335		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000544892	ENST00000495799		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000544892	ENST00000376188		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000320031	ENST00000438316		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000320031	ENST00000466508		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000320031	ENST00000055335		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000320031	ENST00000495799		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000320031	ENST00000376188		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000007722	ENST00000438316		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000007722	ENST00000466508		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000007722	ENST00000055335		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000007722	ENST00000495799		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000007722	ENST00000376188		ChiTaRS3.1			BF359837	ITGA3	chr17	48148953	+	PPP1R3F	chrX	49131569	-
intron-intron	ENST00000595618	ENST00000368679		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000595618	ENST00000368676		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000595618	ENST00000467145		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000594824	ENST00000368679		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000594824	ENST00000368676		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000594824	ENST00000467145		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000397274	ENST00000368679		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000397274	ENST00000368676		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000397274	ENST00000467145		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000593411	ENST00000368679		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000593411	ENST00000368676		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
intron-intron	ENST00000593411	ENST00000467145		ChiTaRS3.1			BF997417	MYO9B	chr19	17295674	-	ADAM12	chr10	127990197	+
3UTR-3UTR	ENST00000553116	ENST00000553116		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
3UTR-3UTR	ENST00000553116	ENST00000360299		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
3UTR-intron	ENST00000553116	ENST00000448789		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
3UTR-3UTR	ENST00000360299	ENST00000553116		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
3UTR-3UTR	ENST00000360299	ENST00000360299		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
3UTR-intron	ENST00000360299	ENST00000448789		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
intron-3UTR	ENST00000448789	ENST00000553116		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
intron-3UTR	ENST00000448789	ENST00000360299		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
intron-intron	ENST00000448789	ENST00000448789		ChiTaRS3.1			AW886457	RAB5B	chr12	56387420	-	RAB5B	chr12	56387644	+
5CDS-intron	ENST00000354185	ENST00000359930		ChiTaRS3.1			BG981127	DDX21	chr10	70725242	+	SULF2	chr20	46302012	-
5CDS-intron	ENST00000354185	ENST00000484875		ChiTaRS3.1			BG981127	DDX21	chr10	70725242	+	SULF2	chr20	46302012	-
5CDS-intron	ENST00000354185	ENST00000361612		ChiTaRS3.1			BG981127	DDX21	chr10	70725242	+	SULF2	chr20	46302012	-
5CDS-intron	ENST00000354185	ENST00000467815		ChiTaRS3.1			BG981127	DDX21	chr10	70725242	+	SULF2	chr20	46302012	-
5CDS-intron	ENST00000354185	ENST00000478766		ChiTaRS3.1			BG981127	DDX21	chr10	70725242	+	SULF2	chr20	46302012	-
intron-3UTR	ENST00000249883	ENST00000249883		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000249883	ENST00000422605		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000249883	ENST00000514516		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000249883	ENST00000513145		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000249883	ENST00000511759		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000422605	ENST00000249883		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000422605	ENST00000422605		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000422605	ENST00000514516		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000422605	ENST00000513145		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000422605	ENST00000511759		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000514516	ENST00000249883		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000514516	ENST00000422605		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000514516	ENST00000514516		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000514516	ENST00000513145		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000514516	ENST00000511759		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000513145	ENST00000249883		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000513145	ENST00000422605		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000513145	ENST00000514516		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000513145	ENST00000513145		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000513145	ENST00000511759		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000511759	ENST00000249883		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000511759	ENST00000422605		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-3UTR	ENST00000511759	ENST00000514516		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000511759	ENST00000513145		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000511759	ENST00000511759		ChiTaRS3.1			AA461237	AMOTL2	chr3	134075707	-	AMOTL2	chr3	134076231	-
intron-intron	ENST00000261839	ENST00000287912		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000401878		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000392759		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000486747		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000341148		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000287912		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000401878		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000392759		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000486747		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000341148		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000287912		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000401878		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000392759		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000486747		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000341148		ChiTaRS3.1			BF834267	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-3CDS	ENST00000295470	ENST00000295470		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000295470	ENST00000349655		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000295470	ENST00000602300		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000295470	ENST00000502762		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000295470	ENST00000514511		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-3CDS	ENST00000349655	ENST00000295470		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000349655	ENST00000349655		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000349655	ENST00000602300		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000349655	ENST00000502762		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000349655	ENST00000514511		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-3CDS	ENST00000602300	ENST00000295470		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000602300	ENST00000349655		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000602300	ENST00000602300		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000602300	ENST00000502762		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000602300	ENST00000514511		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-3CDS	ENST00000502762	ENST00000295470		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000502762	ENST00000349655		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000502762	ENST00000602300		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000502762	ENST00000502762		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000502762	ENST00000514511		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-3CDS	ENST00000514511	ENST00000295470		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000514511	ENST00000349655		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000514511	ENST00000602300		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000514511	ENST00000502762		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
intron-5UTR	ENST00000514511	ENST00000514511		ChiTaRS3.1			X52767	HNRNPDL	chr4	83349587	+	HNRNPDL	chr4	83350565	-
3UTR-3UTR	ENST00000340124	ENST00000446176		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-3UTR	ENST00000340124	ENST00000420781		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000340124	ENST00000355681		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000340124	ENST00000443566		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000340124	ENST00000478129		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-3UTR	ENST00000440783	ENST00000446176		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-3UTR	ENST00000440783	ENST00000420781		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000440783	ENST00000355681		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000440783	ENST00000443566		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-intron	ENST00000440783	ENST00000478129		ChiTaRS3.1			AA449487	GPT2	chr16	46965083	-	FNBP1	chr9	132651026	+
3UTR-3UTR	ENST00000264033	ENST00000264033		ChiTaRS3.1			AW500077	CBL	chr11	119177439	-	CBL	chr11	119177193	+
Frame-shit	ENST00000322088	ENST00000322088		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
Frame-shit	ENST00000322088	ENST00000444322		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000322088	ENST00000477989		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000322088	ENST00000462990		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000322088	ENST00000473455		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
Frame-shit	ENST00000444322	ENST00000322088		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
Frame-shit	ENST00000444322	ENST00000444322		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000444322	ENST00000477989		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000444322	ENST00000462990		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000444322	ENST00000473455		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-3CDS	ENST00000477989	ENST00000322088		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-3CDS	ENST00000477989	ENST00000444322		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000477989	ENST00000477989		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000477989	ENST00000462990		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000477989	ENST00000473455		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
Frame-shit	ENST00000462990	ENST00000322088		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
Frame-shit	ENST00000462990	ENST00000444322		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000462990	ENST00000477989		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000462990	ENST00000462990		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
5CDS-intron	ENST00000462990	ENST00000473455		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-3CDS	ENST00000473455	ENST00000322088		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-3CDS	ENST00000473455	ENST00000444322		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000473455	ENST00000477989		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000473455	ENST00000462990		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
intron-intron	ENST00000473455	ENST00000473455		ChiTaRS3.1			CN418097	PPP2R1A	chr19	52724323	+	PPP2R1A	chr19	52716038	+
3UTR-3UTR	ENST00000322428	ENST00000371989		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000322428	ENST00000485435		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000322428	ENST00000545297		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000322428	ENST00000467910		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000322428	ENST00000371991		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-3UTR	ENST00000534585	ENST00000371989		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000534585	ENST00000485435		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000534585	ENST00000545297		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000534585	ENST00000467910		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
3UTR-intron	ENST00000534585	ENST00000371991		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-3UTR	ENST00000532522	ENST00000371989		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-intron	ENST00000532522	ENST00000485435		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-intron	ENST00000532522	ENST00000545297		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-intron	ENST00000532522	ENST00000467910		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-intron	ENST00000532522	ENST00000371991		ChiTaRS3.1			AW241177	MAF1	chr8	145162429	-	SURF4	chr9	136228884	+
intron-intron	ENST00000376509	ENST00000376509		ChiTaRS3.1			AW364927	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000376509	ENST00000485431		ChiTaRS3.1			AW364927	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-intron	ENST00000485431	ENST00000376509		ChiTaRS3.1			AW364927	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000485431	ENST00000485431		ChiTaRS3.1			AW364927	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-intron	ENST00000298248	ENST00000403829		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000298687		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000350792		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397858		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000554104		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000555158		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000553503		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397853		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000360463		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000556147		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397856		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397855		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000554143		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397851		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397847		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000298684		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000298248	ENST00000397844		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-intron	ENST00000298248	ENST00000554277		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-intron	ENST00000382812	ENST00000403829		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000298687		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000350792		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397858		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000554104		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000555158		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000553503		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397853		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000360463		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000556147		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397856		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397855		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000554143		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397851		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397847		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000298684		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000382812	ENST00000397844		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-intron	ENST00000382812	ENST00000554277		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-intron	ENST00000480748	ENST00000403829		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000298687		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000350792		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397858		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000554104		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000555158		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000553503		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397853		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000360463		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000556147		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397856		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397855		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000554143		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397851		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397847		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000298684		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-3UTR	ENST00000480748	ENST00000397844		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
intron-intron	ENST00000480748	ENST00000554277		ChiTaRS3.1			BF926027	CRYL1	chr13	21053994	-	NDRG2	chr14	21485276	+
3UTR-3CDS	ENST00000266087	ENST00000266087		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000266087	ENST00000382058		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000266087	ENST00000397426		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-intron	ENST00000266087	ENST00000465418		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000382058	ENST00000266087		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000382058	ENST00000382058		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000382058	ENST00000397426		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-intron	ENST00000382058	ENST00000465418		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000397426	ENST00000266087		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000397426	ENST00000382058		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-3CDS	ENST00000397426	ENST00000397426		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
3UTR-intron	ENST00000397426	ENST00000465418		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
intron-3CDS	ENST00000465418	ENST00000266087		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
intron-3CDS	ENST00000465418	ENST00000382058		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
intron-3CDS	ENST00000465418	ENST00000397426		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
intron-intron	ENST00000465418	ENST00000465418		ChiTaRS3.1			AI272377	FBXO7	chr22	32894743	+	FBXO7	chr22	32894439	-
5CDS-5UTR	ENST00000225719	ENST00000225719		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
5CDS-intron	ENST00000225719	ENST00000543464		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
5CDS-intron	ENST00000225719	ENST00000584051		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-5UTR	ENST00000543464	ENST00000225719		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-intron	ENST00000543464	ENST00000543464		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-intron	ENST00000543464	ENST00000584051		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-5UTR	ENST00000584051	ENST00000225719		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-intron	ENST00000584051	ENST00000543464		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
intron-intron	ENST00000584051	ENST00000584051		ChiTaRS3.1			DR003197	CPD	chr17	28706138	-	CPD	chr17	28705984	+
3UTR-intron	ENST00000252577	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000376048		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000311066		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000235372		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000502727		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000413440		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000343137		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000503842		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000505823		ChiTaRS3.1			BP381437	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766247	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766247	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000444921	ENST00000342056		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000355194		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000370398		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000370392		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000355635		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000414165		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000402622		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000444921	ENST00000403813		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000342056		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000355194		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000370398		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000370392		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000355635		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000414165		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000402622		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000339582	ENST00000403813		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000342056		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000355194		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000370398		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000370392		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000355635		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000414165		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000402622		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000358373	ENST00000403813		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000342056		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000355194		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000370398		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000370392		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000355635		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000414165		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000402622		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000405249	ENST00000403813		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000342056		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000355194		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000370398		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000370392		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000355635		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000414165		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000402622		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-intron	ENST00000480995	ENST00000403813		ChiTaRS3.1			AI267717	GRM8	chr7	126717751	-	KCNQ5	chr6	73356962	+
intron-3CDS	ENST00000571133	ENST00000571133		ChiTaRS3.1			AV748507	RSL1D1	chr16	11931106	-	RSL1D1	chr16	11933724	-
intron-3CDS	ENST00000571133	ENST00000542106		ChiTaRS3.1			AV748507	RSL1D1	chr16	11931106	-	RSL1D1	chr16	11933724	-
intron-3CDS	ENST00000542106	ENST00000571133		ChiTaRS3.1			AV748507	RSL1D1	chr16	11931106	-	RSL1D1	chr16	11933724	-
intron-3CDS	ENST00000542106	ENST00000542106		ChiTaRS3.1			AV748507	RSL1D1	chr16	11931106	-	RSL1D1	chr16	11933724	-
Frame-shit	ENST00000369005	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369005	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369005	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369005	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369005	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369005	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369005	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000513429	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000513429	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515273	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000515273	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000515603	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000515603	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000453444	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000453444	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000358010	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000358010	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000334433	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000334433	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369001	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369001	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369000	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369000	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369000	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369000	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369000	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369000	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369000	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000360561	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000360561	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000368999	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000368999	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000369004	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000369004	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000260733	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000260733	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000260733	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000260733	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000260733	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
In-frame	ENST00000260733	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
Frame-shit	ENST00000260733	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000354429		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000574255		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000356683		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000396627		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000574993		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000396628		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-3CDS	ENST00000493951	ENST00000573657		ChiTaRS3.1			AW379827	TACC2	chr10	124013518	-	ELP5	chr17	7157914	+
intron-intron	ENST00000382159	ENST00000520096		ChiTaRS3.1			DQ376079	GNG7	chr19	2625633	-	LINC00535	chr8	94405791	-
intron-intron	ENST00000382159	ENST00000501400		ChiTaRS3.1			DQ376079	GNG7	chr19	2625633	-	LINC00535	chr8	94405791	-
intron-intron	ENST00000382159	ENST00000520513		ChiTaRS3.1			DQ376079	GNG7	chr19	2625633	-	LINC00535	chr8	94405791	-
intron-intron	ENST00000382159	ENST00000517785		ChiTaRS3.1			DQ376079	GNG7	chr19	2625633	-	LINC00535	chr8	94405791	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766277	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766277	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3UTR	ENST00000325324	ENST00000315249		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000325324	ENST00000580569		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000325324	ENST00000268850		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000325324	ENST00000378516		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000325324	ENST00000584655		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000325324	ENST00000394597		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000325324	ENST00000447669		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000325324	ENST00000415395		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000325324	ENST00000413582		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409296	ENST00000315249		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409296	ENST00000580569		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409296	ENST00000268850		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409296	ENST00000378516		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409296	ENST00000584655		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409296	ENST00000394597		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409296	ENST00000447669		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409296	ENST00000415395		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409296	ENST00000413582		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409534	ENST00000315249		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409534	ENST00000580569		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409534	ENST00000268850		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409534	ENST00000378516		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409534	ENST00000584655		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000409534	ENST00000394597		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409534	ENST00000447669		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409534	ENST00000415395		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000409534	ENST00000413582		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000512177	ENST00000315249		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000512177	ENST00000580569		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000512177	ENST00000268850		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000512177	ENST00000378516		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000512177	ENST00000584655		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000512177	ENST00000394597		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000512177	ENST00000447669		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000512177	ENST00000415395		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-intron	ENST00000512177	ENST00000413582		ChiTaRS3.1			BU507077	IPO11	chr5	61836556	+	RFFL	chr17	33337536	-
intron-3UTR	ENST00000293760	ENST00000534336		ChiTaRS3.1			BI038767	LEMD2	chr6	33747942	+	MALAT1	chr11	65268151	+
intron-3UTR	ENST00000508327	ENST00000534336		ChiTaRS3.1			BI038767	LEMD2	chr6	33747942	+	MALAT1	chr11	65268151	+
intron-3UTR	ENST00000502643	ENST00000534336		ChiTaRS3.1			BI038767	LEMD2	chr6	33747942	+	MALAT1	chr11	65268151	+
intron-intron	ENST00000359428	ENST00000343053		ChiTaRS3.1			BF943277	NUP214	chr9	134069874	-	NELFB	chr9	140162670	-
intron-intron	ENST00000411637	ENST00000343053		ChiTaRS3.1			BF943277	NUP214	chr9	134069874	-	NELFB	chr9	140162670	-
intron-intron	ENST00000451030	ENST00000343053		ChiTaRS3.1			BF943277	NUP214	chr9	134069874	-	NELFB	chr9	140162670	-
intron-intron	ENST00000483497	ENST00000343053		ChiTaRS3.1			BF943277	NUP214	chr9	134069874	-	NELFB	chr9	140162670	-
intron-intron	ENST00000465486	ENST00000343053		ChiTaRS3.1			BF943277	NUP214	chr9	134069874	-	NELFB	chr9	140162670	-
intron-intron	ENST00000609129	ENST00000261381		ChiTaRS3.1			AV730447	ZBTB8B	chr1	32931800	+	XYLT1	chr16	17272118	+
intron-intron	ENST00000609129	ENST00000568226		ChiTaRS3.1			AV730447	ZBTB8B	chr1	32931800	+	XYLT1	chr16	17272118	+
intron-intron	ENST00000267101	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000267101	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000450146	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000415288	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000553131	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000411731	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000441493		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000400561		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000444520		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000414725		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000383094		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000207726		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000429452		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000585038		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
intron-intron	ENST00000549832	ENST00000580469		ChiTaRS3.1			BG983587	ERBB3	chr12	56493959	-	MICAL3	chr22	18473830	+
5CDS-3UTR	ENST00000374518	ENST00000367142		ChiTaRS3.1			BP367197	BMS1	chr10	43292639	+	NUCKS1	chr1	205683948	-
5CDS-intron	ENST00000374518	ENST00000464938		ChiTaRS3.1			BP367197	BMS1	chr10	43292639	+	NUCKS1	chr1	205683948	-
3UTR-3UTR	ENST00000307602	ENST00000307602		ChiTaRS3.1			AW298467	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
3UTR-intron	ENST00000307602	ENST00000524839		ChiTaRS3.1			AW298467	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
intron-3UTR	ENST00000524839	ENST00000307602		ChiTaRS3.1			AW298467	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
intron-intron	ENST00000524839	ENST00000524839		ChiTaRS3.1			AW298467	HOOK3	chr8	42877095	-	HOOK3	chr8	42878064	-
5CDS-3UTR	ENST00000296218	ENST00000341550		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-3UTR	ENST00000296218	ENST00000396807		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-3UTR	ENST00000296218	ENST00000446105		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-intron	ENST00000296218	ENST00000486287		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-intron	ENST00000296218	ENST00000444704		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-intron	ENST00000296218	ENST00000423703		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5CDS-intron	ENST00000296218	ENST00000412586		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-3UTR	ENST00000541606	ENST00000341550		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-3UTR	ENST00000541606	ENST00000396807		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-3UTR	ENST00000541606	ENST00000446105		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-intron	ENST00000541606	ENST00000486287		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-intron	ENST00000541606	ENST00000444704		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-intron	ENST00000541606	ENST00000423703		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
5UTR-intron	ENST00000541606	ENST00000412586		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-3UTR	ENST00000497858	ENST00000341550		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-3UTR	ENST00000497858	ENST00000396807		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-3UTR	ENST00000497858	ENST00000446105		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-intron	ENST00000497858	ENST00000486287		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-intron	ENST00000497858	ENST00000444704		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-intron	ENST00000497858	ENST00000423703		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
intron-intron	ENST00000497858	ENST00000412586		ChiTaRS3.1			BG012707	DNALI1	chr1	38023295	+	ING4	chr12	6759865	-
Frame-shit	ENST00000260956	ENST00000260956		ChiTaRS3.1			BM968087	SSB	chr2	170663549	-	SSB	chr2	170667457	-
Frame-shit	ENST00000260956	ENST00000409333		ChiTaRS3.1			BM968087	SSB	chr2	170663549	-	SSB	chr2	170667457	-
Frame-shit	ENST00000409333	ENST00000260956		ChiTaRS3.1			BM968087	SSB	chr2	170663549	-	SSB	chr2	170667457	-
Frame-shit	ENST00000409333	ENST00000409333		ChiTaRS3.1			BM968087	SSB	chr2	170663549	-	SSB	chr2	170667457	-
intron-intron	ENST00000581396	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000581396	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000581396	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000581396	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000379504	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000379504	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000379504	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000379504	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000318094	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000318094	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000318094	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000318094	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000395739	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000395739	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000395739	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000395739	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000535933	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000535933	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000535933	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000535933	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000540946	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000540946	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000540946	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000540946	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000542206	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000542206	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000542206	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000542206	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000478943	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000478943	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000478943	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000478943	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000577517	ENST00000267229		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000577517	ENST00000438737		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000577517	ENST00000438724		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-intron	ENST00000577517	ENST00000461008		ChiTaRS3.1			BF920827	TOM1L2	chr17	17852952	+	RBM26	chr13	79932807	+
intron-3CDS	ENST00000394609	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394609		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000405240		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357376		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000317610		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357732		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000337526		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394611		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000404909		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000486085		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000354474		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000402434		ChiTaRS3.1			AA180827	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
3UTR-3CDS	ENST00000439351	ENST00000439351		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-3CDS	ENST00000439351	ENST00000265028		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-intron	ENST00000439351	ENST00000538831		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-3CDS	ENST00000265028	ENST00000439351		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-3CDS	ENST00000265028	ENST00000265028		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-intron	ENST00000265028	ENST00000538831		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
intron-3CDS	ENST00000538831	ENST00000439351		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
intron-3CDS	ENST00000538831	ENST00000265028		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
intron-intron	ENST00000538831	ENST00000538831		ChiTaRS3.1			AW999687	DNAJB11	chr3	186303311	+	DNAJB11	chr3	186299260	+
3UTR-3CDS	ENST00000264033	ENST00000215882		ChiTaRS3.1			BC016877	CBL	chr11	119175363	-	SLC25A1	chr22	19164441	-
3UTR-3CDS	ENST00000264033	ENST00000451283		ChiTaRS3.1			BC016877	CBL	chr11	119175363	-	SLC25A1	chr22	19164441	-
3UTR-5UTR	ENST00000264033	ENST00000461267		ChiTaRS3.1			BC016877	CBL	chr11	119175363	-	SLC25A1	chr22	19164441	-
3UTR-3UTR	ENST00000333677	ENST00000333677		ChiTaRS3.1			AW975097	ARHGEF37	chr5	149012082	+	ARHGEF37	chr5	149012033	-
intron-3CDS	ENST00000261674	ENST00000358632		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000268053		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000419019		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000541301		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000467407		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000358632		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000268053		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000419019		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000541301		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000467407		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000358632		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000268053		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000419019		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000541301		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000467407		ChiTaRS3.1			BG011367	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000370951	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370951		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000405432		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370950		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000436161		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000484162		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370949		ChiTaRS3.1			AA829157	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000316399	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000396356	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000352083	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000528252	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000527619	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000528429	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-intron	ENST00000533658	ENST00000418539		ChiTaRS3.1			BE765997	SOX6	chr11	16368445	+	BCYRN1	chrX	70518661	-
intron-3CDS	ENST00000360538	ENST00000360538		ChiTaRS3.1			CB241307	TOPORS	chr9	32541965	+	TOPORS	chr9	32542077	-
intron-3CDS	ENST00000360538	ENST00000379858		ChiTaRS3.1			CB241307	TOPORS	chr9	32541965	+	TOPORS	chr9	32542077	-
intron-3CDS	ENST00000379858	ENST00000360538		ChiTaRS3.1			CB241307	TOPORS	chr9	32541965	+	TOPORS	chr9	32542077	-
intron-3CDS	ENST00000379858	ENST00000379858		ChiTaRS3.1			CB241307	TOPORS	chr9	32541965	+	TOPORS	chr9	32542077	-
intron-intron	ENST00000607016	ENST00000607016		ChiTaRS3.1			AA501517	NUDT3	chr6	34304844	-	NUDT3	chr6	34304762	+
intron-intron	ENST00000262158	ENST00000534863		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000262158	ENST00000470751		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000262158	ENST00000272902		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000262158	ENST00000383843		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000262158	ENST00000458465		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000262158	ENST00000405420		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000534863		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000470751		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000272902		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000383843		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000458465		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000591805	ENST00000405420		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000534863		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000470751		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000272902		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000383843		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000458465		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000589634	ENST00000405420		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000534863		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000470751		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000272902		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000383843		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000458465		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-intron	ENST00000585986	ENST00000405420		ChiTaRS3.1			BE831647	SMAD7	chr18	46448175	+	SUMF1	chr3	3886191	-
intron-3CDS	ENST00000282344	ENST00000322644		ChiTaRS3.1			BE833427	USP12	chr13	27666061	-	POLR2A	chr17	7416459	-
intron-intron	ENST00000282344	ENST00000572844		ChiTaRS3.1			BE833427	USP12	chr13	27666061	-	POLR2A	chr17	7416459	-
intron-intron	ENST00000358731	ENST00000358731		ChiTaRS3.1			AB033067	BDP1	chr5	70807178	+	BDP1	chr5	70787755	+
intron-intron	ENST00000358731	ENST00000380675		ChiTaRS3.1			AB033067	BDP1	chr5	70807178	+	BDP1	chr5	70787755	+
intron-intron	ENST00000380675	ENST00000358731		ChiTaRS3.1			AB033067	BDP1	chr5	70807178	+	BDP1	chr5	70787755	+
intron-intron	ENST00000380675	ENST00000380675		ChiTaRS3.1			AB033067	BDP1	chr5	70807178	+	BDP1	chr5	70787755	+
intron-intron	ENST00000392185	ENST00000335312		ChiTaRS3.1			BF989347	SNX9	chr6	158360718	+	PIP5K1C	chr19	3675456	-
intron-intron	ENST00000392185	ENST00000539785		ChiTaRS3.1			BF989347	SNX9	chr6	158360718	+	PIP5K1C	chr19	3675456	-
intron-intron	ENST00000392185	ENST00000589578		ChiTaRS3.1			BF989347	SNX9	chr6	158360718	+	PIP5K1C	chr19	3675456	-
intron-intron	ENST00000392185	ENST00000537021		ChiTaRS3.1			BF989347	SNX9	chr6	158360718	+	PIP5K1C	chr19	3675456	-
intron-intron	ENST00000392185	ENST00000587482		ChiTaRS3.1			BF989347	SNX9	chr6	158360718	+	PIP5K1C	chr19	3675456	-
intron-3CDS	ENST00000357214	ENST00000258770		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000357214	ENST00000361278		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000357214	ENST00000395655		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000357214	ENST00000494076		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-5UTR	ENST00000357214	ENST00000471142		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000468598	ENST00000258770		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000468598	ENST00000361278		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000468598	ENST00000395655		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-3CDS	ENST00000468598	ENST00000494076		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-5UTR	ENST00000468598	ENST00000471142		ChiTaRS3.1			BM147067	SFPQ	chr1	35658614	-	TBRG4	chr7	45148824	-
intron-intron	ENST00000407073	ENST00000344922		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000407073	ENST00000344441		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000407073	ENST00000344507		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000407073	ENST00000340535		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-3UTR	ENST00000407073	ENST00000470521		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000478804	ENST00000344922		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000478804	ENST00000344441		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000478804	ENST00000344507		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000478804	ENST00000340535		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-3UTR	ENST00000478804	ENST00000470521		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000404807	ENST00000344922		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000404807	ENST00000344441		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000404807	ENST00000344507		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000404807	ENST00000340535		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-3UTR	ENST00000404807	ENST00000470521		ChiTaRS3.1			BF770897	MBD5	chr2	148796419	-	MIA3	chr1	222819160	+
intron-intron	ENST00000599470	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599470	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000321944	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000358301	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000597766	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000593690	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000599386	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000435673	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000599470		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000321944		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000358301		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000597766		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000593690		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000599386		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000435673		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000360442	ENST00000360442		ChiTaRS3.1			BE066277	PAK4	chr19	39623169	+	PAK4	chr19	39622757	+
intron-intron	ENST00000369825	ENST00000392411		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000321280		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000428708		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000575712		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000575245		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000435091		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000321300		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000573894		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369825	ENST00000416299		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000392411		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000321280		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000428708		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000575712		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000575245		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000435091		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000321300		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000573894		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369811	ENST00000416299		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000392411		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000321280		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000428708		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000575712		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000575245		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000435091		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000321300		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000573894		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000369815	ENST00000416299		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000392411		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000321280		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000428708		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000575712		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000575245		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000435091		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000321300		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000573894		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000337003	ENST00000416299		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000392411		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000321280		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000428708		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000575712		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000575245		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000435091		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000321300		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000573894		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
intron-intron	ENST00000309579	ENST00000416299		ChiTaRS3.1			BE837027	USMG5	chr10	105151997	-	BAIAP2	chr17	79009108	-
3UTR-3CDS	ENST00000526589	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-intron	ENST00000526589	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000527974	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000352231	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000341872	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000450372	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000366584	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000416919	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000323938	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000526634	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000375664		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000375646		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000347934		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000354911		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000428935		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000525042	ENST00000532233		ChiTaRS3.1			BE082917	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-intron	ENST00000263657	ENST00000272117		ChiTaRS3.1			DB347287	PNO1	chr2	68402659	-	ITPKB	chr1	226851529	+
3UTR-intron	ENST00000263657	ENST00000429204		ChiTaRS3.1			DB347287	PNO1	chr2	68402659	-	ITPKB	chr1	226851529	+
3UTR-intron	ENST00000263657	ENST00000366784		ChiTaRS3.1			DB347287	PNO1	chr2	68402659	-	ITPKB	chr1	226851529	+
intron-3CDS	ENST00000354329	ENST00000346169		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000414031		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000392537		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000382330		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000350481		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000352767		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000427845		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000342981		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000319274		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000424196		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000411531		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000441154		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000434061		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000354329	ENST00000435046		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000346169		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000414031		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000392537		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000382330		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000350481		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000352767		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000427845		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000342981		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000319274		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000424196		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000411531		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000441154		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000434061		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000529578	ENST00000435046		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000346169		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000414031		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000392537		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000382330		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000350481		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000352767		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000427845		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000342981		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000319274		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000424196		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000411531		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000441154		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000434061		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000533112	ENST00000435046		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000346169		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000414031		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000392537		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000382330		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000350481		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000352767		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000427845		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000342981		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000319274		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000424196		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000411531		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000441154		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000434061		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000531253	ENST00000435046		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000346169		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000414031		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000392537		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000382330		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000350481		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000352767		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000427845		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000342981		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000319274		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000424196		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000411531		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000441154		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000434061		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-3CDS	ENST00000527372	ENST00000435046		ChiTaRS3.1			DA536097	MYO18A	chr17	27435487	-	EIF4G1	chr3	184043146	+
intron-intron	ENST00000377047	ENST00000377047		ChiTaRS3.1			BF669457	GPC6	chr13	94255143	+	GPC6	chr13	94250660	+
intron-intron	ENST00000406775	ENST00000525074		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000406775	ENST00000345851		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000406775	ENST00000536344		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000406775	ENST00000359518		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000406775	ENST00000537602		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000406775	ENST00000529058		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000342771	ENST00000525074		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000342771	ENST00000345851		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000342771	ENST00000536344		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000342771	ENST00000359518		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000342771	ENST00000537602		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000342771	ENST00000529058		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000403018	ENST00000525074		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000403018	ENST00000345851		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000403018	ENST00000536344		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000403018	ENST00000359518		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000403018	ENST00000537602		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000403018	ENST00000529058		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000489774	ENST00000525074		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000489774	ENST00000345851		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000489774	ENST00000536344		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000489774	ENST00000359518		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-5UTR	ENST00000489774	ENST00000537602		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-intron	ENST00000489774	ENST00000529058		ChiTaRS3.1			DA101147	AUTS2	chr7	69636794	+	TRIM3	chr11	6495090	-
intron-3UTR	ENST00000301749	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000301749	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000301749	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000301749	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000301749	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000301749	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000359128	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000359128	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000359128	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000359128	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000359128	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000359128	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000419350	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000419350	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000419350	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000419350	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000419350	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000419350	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000448023	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000448023	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000448023	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000448023	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000448023	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000448023	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000603507	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000603507	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000603507	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000603507	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000603507	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000603507	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000324659	ENST00000301749		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000324659	ENST00000359128		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-5UTR	ENST00000324659	ENST00000419350		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3UTR	ENST00000324659	ENST00000448023		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000324659	ENST00000603507		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-intron	ENST00000324659	ENST00000324659		ChiTaRS3.1			AW504437	NLRC3	chr16	3589108	+	NLRC3	chr16	3589732	-
intron-3CDS	ENST00000265239	ENST00000251157		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000265239	ENST00000340370		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000265239	ENST00000489185		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000265239	ENST00000404627		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000455191	ENST00000251157		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000455191	ENST00000340370		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000455191	ENST00000489185		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000455191	ENST00000404627		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000453254	ENST00000251157		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000453254	ENST00000340370		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000453254	ENST00000489185		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000453254	ENST00000404627		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000480302	ENST00000251157		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-3CDS	ENST00000480302	ENST00000340370		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000480302	ENST00000489185		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000480302	ENST00000404627		ChiTaRS3.1			CA775747	IQCG	chr3	197677087	-	DOCK7	chr1	62976292	+
intron-intron	ENST00000330258	ENST00000303635		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000439411		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000476163		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000557126		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000473578		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000467404		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000330258	ENST00000476864		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000303635		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000439411		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000476163		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000557126		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000473578		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000467404		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000374869	ENST00000476864		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000303635		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000439411		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000476163		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000557126		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000473578		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000467404		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
intron-intron	ENST00000403336	ENST00000476864		ChiTaRS3.1			BF352527	AMER1	chrX	63407134	-	CAMTA1	chr1	6996143	-
3UTR-3UTR	ENST00000009041	ENST00000009041		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000544203		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000434197		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000009041	ENST00000396013		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000009041		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000544203		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000434197		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000544203	ENST00000396013		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000009041		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000544203		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000434197		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000434197	ENST00000396013		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000009041		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000544203		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000434197		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
3UTR-3UTR	ENST00000396013	ENST00000396013		ChiTaRS3.1			AA907447	STARD3NL	chr7	38269653	-	STARD3NL	chr7	38269769	+
intron-3UTR	ENST00000358901	ENST00000358901		ChiTaRS3.1			BQ219507	VCP	chr9	35057204	+	VCP	chr9	35057067	-
intron-3UTR	ENST00000333762	ENST00000333762		ChiTaRS3.1			AI632747	H1FX	chr3	129034289	+	H1FX	chr3	129033841	+
intron-intron	ENST00000369238	ENST00000607273		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
intron-intron	ENST00000369238	ENST00000389488		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
intron-intron	ENST00000460583	ENST00000607273		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
intron-intron	ENST00000460583	ENST00000389488		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
intron-intron	ENST00000392988	ENST00000607273		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
intron-intron	ENST00000392988	ENST00000389488		ChiTaRS3.1			BQ345327	ACP6	chr1	147119192	-	PRIM2	chr6	57343364	-
3UTR-3UTR	ENST00000272102	ENST00000341516		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-3UTR	ENST00000272102	ENST00000554215		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000272102	ENST00000556847		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000272102	ENST00000557386		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000272102	ENST00000389997		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000272102	ENST00000553293		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-3UTR	ENST00000540651	ENST00000341516		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-3UTR	ENST00000540651	ENST00000554215		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000540651	ENST00000556847		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000540651	ENST00000557386		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000540651	ENST00000389997		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000540651	ENST00000553293		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-3UTR	ENST00000478424	ENST00000341516		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-3UTR	ENST00000478424	ENST00000554215		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-intron	ENST00000478424	ENST00000556847		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-intron	ENST00000478424	ENST00000557386		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-intron	ENST00000478424	ENST00000389997		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-intron	ENST00000478424	ENST00000553293		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-3UTR	ENST00000541182	ENST00000341516		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-3UTR	ENST00000541182	ENST00000554215		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000541182	ENST00000556847		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000541182	ENST00000557386		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000541182	ENST00000389997		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
3UTR-intron	ENST00000541182	ENST00000553293		ChiTaRS3.1			W94277	ARF1	chr1	228286629	-	DCAF5	chr14	69518853	+
intron-intron	ENST00000561621	ENST00000406606		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000561621	ENST00000371850		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000561621	ENST00000371851		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000561621	ENST00000486113		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000290881	ENST00000406606		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000290881	ENST00000371850		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000290881	ENST00000371851		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000290881	ENST00000486113		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563902	ENST00000406606		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563902	ENST00000371850		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563902	ENST00000371851		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563902	ENST00000486113		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563831	ENST00000406606		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563831	ENST00000371850		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563831	ENST00000371851		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
intron-intron	ENST00000563831	ENST00000486113		ChiTaRS3.1			BF828927	KIAA0895L	chr16	67210284	-	VAV2	chr9	136802974	-
3UTR-3CDS	ENST00000361530	ENST00000361530		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000361530	ENST00000480348		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000361530	ENST00000374253		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000361530	ENST00000531191		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
intron-3CDS	ENST00000480348	ENST00000361530		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
intron-intron	ENST00000480348	ENST00000480348		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
intron-intron	ENST00000480348	ENST00000374253		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
intron-intron	ENST00000480348	ENST00000531191		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-3CDS	ENST00000374253	ENST00000361530		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000374253	ENST00000480348		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000374253	ENST00000374253		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000374253	ENST00000531191		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-3CDS	ENST00000531191	ENST00000361530		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000531191	ENST00000480348		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000531191	ENST00000374253		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
3UTR-intron	ENST00000531191	ENST00000531191		ChiTaRS3.1			AW935017	CNKSR1	chr1	26516076	-	CNKSR1	chr1	26515808	+
intron-intron	ENST00000310924	ENST00000367816		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000310924	ENST00000367815		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000310924	ENST00000499679		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000310924	ENST00000367813		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000576768	ENST00000367816		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000576768	ENST00000367815		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000576768	ENST00000499679		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000576768	ENST00000367813		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000340848	ENST00000367816		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000340848	ENST00000367815		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000340848	ENST00000499679		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000340848	ENST00000367813		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000572862	ENST00000367816		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000572862	ENST00000367815		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000572862	ENST00000499679		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000572862	ENST00000367813		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000570373	ENST00000367816		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000570373	ENST00000367815		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000570373	ENST00000499679		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000570373	ENST00000367813		ChiTaRS3.1			AI902427	TBC1D16	chr17	77977104	+	ATP1B1	chr1	169077152	+
intron-intron	ENST00000397927	ENST00000374274		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000397927	ENST00000465030		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000397927	ENST00000276105		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000313669	ENST00000374274		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000313669	ENST00000465030		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000313669	ENST00000276105		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000528707	ENST00000374274		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000528707	ENST00000465030		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000528707	ENST00000276105		ChiTaRS3.1			BF994737	COL26A1	chr7	101107055	-	SNX12	chrX	70222024	+
intron-intron	ENST00000343702	ENST00000395309		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000413890		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000438792		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000395314		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000395308		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000395311		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000416613		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000554507		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000343702	ENST00000555573		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000395309		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000413890		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000438792		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000395314		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000395308		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000395311		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000416613		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000554507		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000344911	ENST00000555573		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000395309		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000413890		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000438792		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000395314		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000395308		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000395311		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000416613		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000554507		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000538383	ENST00000555573		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000395309		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000413890		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000438792		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000395314		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000395308		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000395311		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000416613		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000554507		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000553059	ENST00000555573		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000395309		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000413890		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000438792		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000395314		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000395308		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000395311		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000416613		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000554507		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000552603	ENST00000555573		ChiTaRS3.1			BE147087	NTN4	chr12	96126188	-	KTN1	chr14	56137407	-
intron-intron	ENST00000369583	ENST00000496817		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-intron	ENST00000369583	ENST00000368719		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-intron	ENST00000369583	ENST00000368720		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-intron	ENST00000468749	ENST00000496817		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-intron	ENST00000468749	ENST00000368719		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-intron	ENST00000468749	ENST00000368720		ChiTaRS3.1			BE934767	DUSP5	chr10	112259117	+	S100A6	chr1	153508202	-
intron-3CDS	ENST00000369927	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
intron-3CDS	ENST00000369927	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
intron-3CDS	ENST00000369927	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
intron-3CDS	ENST00000369927	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
intron-intron	ENST00000369927	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000346249	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000346249	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000346249	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000346249	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000346249	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000348257	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000348257	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000348257	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000348257	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000348257	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000352482	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000352482	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000352482	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000352482	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000352482	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000358548	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000358548	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000358548	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000358548	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000358548	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000351424	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000351424	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000351424	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000351424	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000351424	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000217121	ENST00000282268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000217121	ENST00000338635		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000217121	ENST00000396027		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-3CDS	ENST00000217121	ENST00000511817		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
3UTR-intron	ENST00000217121	ENST00000509268		ChiTaRS3.1			BG282107	TPD52L2	chr20	62522683	-	XRCC4	chr5	82648950	+
intron-intron	ENST00000340553	ENST00000402136		ChiTaRS3.1			AW449137	FOXN2	chr2	48547192	+	THAP4	chr2	242527502	-
intron-intron	ENST00000340553	ENST00000407315		ChiTaRS3.1			AW449137	FOXN2	chr2	48547192	+	THAP4	chr2	242527502	-
intron-intron	ENST00000340553	ENST00000402545		ChiTaRS3.1			AW449137	FOXN2	chr2	48547192	+	THAP4	chr2	242527502	-
intron-intron	ENST00000340553	ENST00000497486		ChiTaRS3.1			AW449137	FOXN2	chr2	48547192	+	THAP4	chr2	242527502	-
intron-5UTR	ENST00000397601	ENST00000418604		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000397601	ENST00000303958		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000397601	ENST00000361621		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-intron	ENST00000397601	ENST00000466486		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000343600	ENST00000418604		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000343600	ENST00000303958		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000343600	ENST00000361621		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-intron	ENST00000343600	ENST00000466486		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000345429	ENST00000418604		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000345429	ENST00000303958		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000345429	ENST00000361621		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-intron	ENST00000345429	ENST00000466486		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000376673	ENST00000418604		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000376673	ENST00000303958		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000376673	ENST00000361621		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-intron	ENST00000376673	ENST00000466486		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000445661	ENST00000418604		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000445661	ENST00000303958		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-5UTR	ENST00000445661	ENST00000361621		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-intron	ENST00000445661	ENST00000466486		ChiTaRS3.1			DB171847	MBNL2	chr13	97882117	+	PLP1	chrX	103031802	+
intron-3CDS	ENST00000233154	ENST00000480945		ChiTaRS3.1			BF333117	NCK2	chr2	106429034	-	DDI2	chr1	15964848	+
intron-3CDS	ENST00000451463	ENST00000480945		ChiTaRS3.1			BF333117	NCK2	chr2	106429034	-	DDI2	chr1	15964848	+
intron-3CDS	ENST00000522586	ENST00000480945		ChiTaRS3.1			BF333117	NCK2	chr2	106429034	-	DDI2	chr1	15964848	+
intron-3CDS	ENST00000393349	ENST00000480945		ChiTaRS3.1			BF333117	NCK2	chr2	106429034	-	DDI2	chr1	15964848	+
5CDS-intron	ENST00000366955	ENST00000370551		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
5CDS-intron	ENST00000366955	ENST00000370550		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
5CDS-intron	ENST00000366955	ENST00000356813		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
3UTR-intron	ENST00000467765	ENST00000370551		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
3UTR-intron	ENST00000467765	ENST00000370550		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
3UTR-intron	ENST00000467765	ENST00000356813		ChiTaRS3.1			BE156347	CENPF	chr1	214825155	+	HS2ST1	chr1	87613124	+
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BU743167	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-3CDS	ENST00000216267	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000216267	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000216267	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000216267	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000216267	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000216267	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000216267	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404034	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404034	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404034	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404034	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404034	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404034	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000404034	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404760	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404760	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000404760	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404760	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404760	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000404760	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000404760	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000457780	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000457780	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000457780	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000457780	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000457780	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000457780	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000457780	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000542442	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000542442	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000542442	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000542442	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000542442	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000542442	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000542442	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000342989	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000342989	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000342989	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000342989	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000342989	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000342989	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000342989	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000459821	ENST00000216267		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000459821	ENST00000404034		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3CDS	ENST00000459821	ENST00000404760		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000459821	ENST00000457780		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000459821	ENST00000542442		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-3UTR	ENST00000459821	ENST00000342989		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000459821	ENST00000459821		ChiTaRS3.1			AA116017	BRD1	chr22	50169353	-	BRD1	chr22	50167949	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835137	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000306627	ENST00000367689		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000357444		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000251507		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000325589		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000367686		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000367687		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000347255		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000489615		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000478442		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000486220		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000392064		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000306627	ENST00000367688		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000367689		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000357444		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000251507		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000325589		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000367686		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000367687		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000347255		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000489615		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000478442		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000486220		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000392064		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000346855	ENST00000367688		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000367689		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000357444		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000251507		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000325589		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000367686		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000367687		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000347255		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000489615		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000478442		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000486220		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000392064		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000467766	ENST00000367688		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000367689		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000357444		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000251507		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000325589		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000367686		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000367687		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000347255		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000489615		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000478442		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000486220		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000392064		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000424381	ENST00000367688		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000367689		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000357444		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000251507		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000325589		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000367686		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000367687		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000347255		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000489615		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000478442		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000486220		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000392064		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000475680	ENST00000367688		ChiTaRS3.1			BF364487	UBE2E1	chr3	23900110	-	RABGAP1L	chr1	174784891	-
intron-intron	ENST00000398294	ENST00000398294		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000398294	ENST00000531515		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000398294	ENST00000534224		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000398294	ENST00000527447		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000531515	ENST00000398294		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000531515	ENST00000531515		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000531515	ENST00000534224		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000531515	ENST00000527447		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000534224	ENST00000398294		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000534224	ENST00000531515		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000534224	ENST00000534224		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000534224	ENST00000527447		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000527447	ENST00000398294		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000527447	ENST00000531515		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000527447	ENST00000534224		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
intron-intron	ENST00000527447	ENST00000527447		ChiTaRS3.1			BF001447	CREBZF	chr11	85375578	+	CREBZF	chr11	85370509	+
3UTR-3UTR	ENST00000377809	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000377809	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000377809	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000402010	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000402010	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000402010	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000413835	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000413835	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000413835	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000377810	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000377810	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000377810	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000315032	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000315032	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000315032	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000508192	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000508192	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000508192	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000361128	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000361128	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000361128	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000350490	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000350490	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000350490	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000502399	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000502399	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000502399	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000509502	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000509502	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000509502	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000513765	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000513765	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
3UTR-3UTR	ENST00000513765	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000408948	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000408948	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000408948	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000425897	ENST00000395319		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000425897	ENST00000395321		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
intron-3UTR	ENST00000425897	ENST00000226253		ChiTaRS3.1			AI308067	MARK2	chr11	63676897	-	ALDOC	chr17	26900284	+
In-frame	ENST00000403681	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000403681	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000541363	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393577	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393578	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000425208	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000536545	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487861		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000471583		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487270		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000488612		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000390683		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000354636	ENST00000469165		ChiTaRS3.1			AY138857	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
intron-intron	ENST00000310343	ENST00000528282		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000530481		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000445890		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000337057		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000530757		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000392427		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000368128		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000527411		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000524581		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000525271		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000525193		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000527659		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000529208		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000531410		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000310343	ENST00000530148		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000528282		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000530481		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000445890		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000337057		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000530757		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000392427		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000368128		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000527411		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000524581		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000525271		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000525193		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000527659		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000529208		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000531410		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000524655	ENST00000530148		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000528282		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000530481		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000445890		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000337057		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000530757		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000392427		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000368128		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000527411		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000524581		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000525271		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000525193		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000527659		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000529208		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000531410		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000392657	ENST00000530148		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000528282		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000530481		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000445890		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000337057		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000530757		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000392427		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000368128		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000527411		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000524581		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000525271		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000525193		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000527659		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000529208		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000531410		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-intron	ENST00000527272	ENST00000530148		ChiTaRS3.1			DA235187	ARHGAP32	chr11	128835485	-	EPB41L2	chr6	131182325	-
intron-3CDS	ENST00000317361	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000399767	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000399774	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000399765	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000342111	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000551952	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
intron-3CDS	ENST00000473439	ENST00000314797		ChiTaRS3.1			AA627417	BID	chr22	18218282	+	COPG1	chr3	128991149	-
3UTR-3CDS	ENST00000383699	ENST00000595437		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
3UTR-3CDS	ENST00000383699	ENST00000376586		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
3UTR-3CDS	ENST00000383699	ENST00000319562		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
3UTR-intron	ENST00000383699	ENST00000376581		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
3UTR-intron	ENST00000383699	ENST00000593990		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000407528	ENST00000595437		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000407528	ENST00000376586		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000407528	ENST00000319562		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000407528	ENST00000376581		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000407528	ENST00000593990		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000405615	ENST00000595437		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000405615	ENST00000376586		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000405615	ENST00000319562		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000405615	ENST00000376581		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000405615	ENST00000593990		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000485126	ENST00000595437		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000485126	ENST00000376586		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-3CDS	ENST00000485126	ENST00000319562		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000485126	ENST00000376581		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000485126	ENST00000593990		ChiTaRS3.1			AU118057	CADM2	chr3	86119209	+	FARP1	chr13	99087889	+
intron-intron	ENST00000522684	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000522684	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000535192	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000535192	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519465	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519465	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000517887	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000517887	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000521059	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000521059	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000395218	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000395218	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000538769	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000538769	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000340930	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000340930	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519419	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519419	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000430260	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000430260	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519881	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519881	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000520892	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000520892	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519635	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000519635	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000517712	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000517712	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000522950	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000522950	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000520151	ENST00000539317		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-intron	ENST00000520151	ENST00000487871		ChiTaRS3.1			BE439387	PTK2	chr8	141668676	+	SMAP2	chr1	40888249	-
intron-3CDS	ENST00000382582	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000382582	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000382582	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000355994	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000355994	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397875	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397875	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397866	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397866	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397865	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397865	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000527041	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000527041	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000359645	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000359645	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000528160	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000528160	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397869	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397869	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000354542	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000354542	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000526111	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000526111	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000580402	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000580402	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000579129	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000579129	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000578193	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000578193	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397863	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397863	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000397860	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000397860	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000382582		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000355994		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000397875		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000397866		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000397865		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000527041		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-3CDS	ENST00000487778	ENST00000359645		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000528160		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000397869		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000354542		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000526111		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000580402		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000579129		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000578193		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000397863		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000397860		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
intron-intron	ENST00000487778	ENST00000487778		ChiTaRS3.1			BP195537	MBP	chr18	74691843	-	MBP	chr18	74701992	-
5CDS-intron	ENST00000265062	ENST00000409003		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000265062	ENST00000314727		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000265062	ENST00000527515		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000482525	ENST00000409003		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000482525	ENST00000314727		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000482525	ENST00000527515		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000485280	ENST00000409003		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000485280	ENST00000314727		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
5CDS-intron	ENST00000485280	ENST00000527515		ChiTaRS3.1			BF759737	RAB7A	chr3	128532195	-	SAMD12	chr8	119361688	+
intron-intron	ENST00000590898	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000590898	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000590898	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000590898	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000590898	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000590898	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000590898	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000399022	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000399022	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000337059	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000337059	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000357384	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000357384	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000588737	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588737	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000319040	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000319040	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000590898		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-3UTR	ENST00000588459	ENST00000399022		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000337059		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000357384		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000588737		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000319040		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000588459	ENST00000588459		ChiTaRS3.1			BM552687	RPRD1A	chr18	33571811	+	RPRD1A	chr18	33571781	-
intron-intron	ENST00000467100	ENST00000467100		ChiTaRS3.1			BM801017	FUBP3	chr9	133513566	-	FUBP3	chr9	133513612	+
intron-3UTR	ENST00000467100	ENST00000319725		ChiTaRS3.1			BM801017	FUBP3	chr9	133513566	-	FUBP3	chr9	133513612	+
3UTR-intron	ENST00000319725	ENST00000467100		ChiTaRS3.1			BM801017	FUBP3	chr9	133513566	-	FUBP3	chr9	133513612	+
3UTR-3UTR	ENST00000319725	ENST00000319725		ChiTaRS3.1			BM801017	FUBP3	chr9	133513566	-	FUBP3	chr9	133513612	+
In-frame	ENST00000413748	ENST00000251595		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000413748	ENST00000397806		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000300175	ENST00000251595		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000300175	ENST00000397806		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000494364	ENST00000251595		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000494364	ENST00000397806		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000497208	ENST00000251595		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
In-frame	ENST00000497208	ENST00000397806		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
3UTR-3CDS	ENST00000498069	ENST00000251595		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
3UTR-3CDS	ENST00000498069	ENST00000397806		ChiTaRS3.1			BP386507	SCG5	chr15	32972005	-	HBA2	chr16	223512	+
intron-3CDS	ENST00000377795	ENST00000546087		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000377795	ENST00000538183		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000377795	ENST00000367055		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000377795	ENST00000367054		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000377795	ENST00000444946		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000377795	ENST00000337404		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000377795	ENST00000452684		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000377795	ENST00000535372		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000353334	ENST00000546087		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000353334	ENST00000538183		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000353334	ENST00000367055		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000353334	ENST00000367054		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000353334	ENST00000444946		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000353334	ENST00000337404		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000353334	ENST00000452684		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000353334	ENST00000535372		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000524315	ENST00000546087		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000524315	ENST00000538183		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000524315	ENST00000367055		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000524315	ENST00000367054		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000524315	ENST00000444946		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000524315	ENST00000337404		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000524315	ENST00000452684		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000524315	ENST00000535372		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000009530	ENST00000546087		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000009530	ENST00000538183		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000009530	ENST00000367055		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-3CDS	ENST00000009530	ENST00000367054		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000009530	ENST00000444946		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000009530	ENST00000337404		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000009530	ENST00000452684		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000009530	ENST00000535372		ChiTaRS3.1			AA934677	CD74	chr5	149781401	+	SOD2	chr6	160106026	+
intron-intron	ENST00000318602	ENST00000499762		ChiTaRS3.1			CB054347	A2M	chr12	9225024	+	A2M-AS1	chr12	9222377	-
intron-intron	ENST00000542567	ENST00000499762		ChiTaRS3.1			CB054347	A2M	chr12	9225024	+	A2M-AS1	chr12	9222377	-
intron-5UTR	ENST00000393240	ENST00000264463		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-intron	ENST00000393240	ENST00000502921		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-5UTR	ENST00000261205	ENST00000264463		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-intron	ENST00000261205	ENST00000502921		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-5UTR	ENST00000457153	ENST00000264463		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-intron	ENST00000457153	ENST00000502921		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-5UTR	ENST00000552744	ENST00000264463		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-intron	ENST00000552744	ENST00000502921		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-5UTR	ENST00000549454	ENST00000264463		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-intron	ENST00000549454	ENST00000502921		ChiTaRS3.1			AF039747	SYT1	chr12	79273668	-	CDH10	chr5	24644861	-
intron-3CDS	ENST00000483825	ENST00000324559		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-intron	ENST00000483825	ENST00000532043		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-3CDS	ENST00000362089	ENST00000324559		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-intron	ENST00000362089	ENST00000532043		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-3CDS	ENST00000392122	ENST00000324559		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-intron	ENST00000392122	ENST00000532043		ChiTaRS3.1			M78967	CD247	chr1	167453034	+	ANO5	chr11	22249102	-
intron-intron	ENST00000458591	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380338		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000355930		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000429426		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000475957		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380321		ChiTaRS3.1			BG217177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000481781	ENST00000260402		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000481781	ENST00000557821		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000481781	ENST00000456256		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-3UTR	ENST00000481781	ENST00000543785		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000260402		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000557821		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000456256		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-3UTR	ENST00000397270	ENST00000543785		ChiTaRS3.1			N69137	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000418088	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000418088	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000418088	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000418088	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000418088	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000452079	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000452079	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000452079	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000452079	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000452079	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000419973	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000419973	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000419973	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000419973	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000419973	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000423764	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000423764	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000423764	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000423764	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000423764	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000587071	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000587071	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000587071	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000587071	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000587071	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000608600	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000608600	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000608600	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000608600	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000608600	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000544565	ENST00000450873		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000544565	ENST00000284957		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000544565	ENST00000439720		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000544565	ENST00000437078		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000544565	ENST00000484547		ChiTaRS3.1			BC062467	TP73-AS1	chr1	3662586	-	RABGEF1	chr7	66244457	+
intron-intron	ENST00000506866	ENST00000506866		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000274031		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000404104		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000406354		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000608958		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000506866		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000274031		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000404104		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000406354		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000608958		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000506866		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000274031		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000404104		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000406354		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000608958		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000506866		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000274031		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000404104		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000406354		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000608958		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000506866		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000274031		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000404104		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000406354		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000608958		ChiTaRS3.1			AA552767	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000398645	ENST00000304460		ChiTaRS3.1			BF379627	KDM2A	chr11	66964358	-	SLC6A19	chr5	1202933	+
intron-intron	ENST00000529006	ENST00000304460		ChiTaRS3.1			BF379627	KDM2A	chr11	66964358	-	SLC6A19	chr5	1202933	+
intron-intron	ENST00000526258	ENST00000304460		ChiTaRS3.1			BF379627	KDM2A	chr11	66964358	-	SLC6A19	chr5	1202933	+
intron-intron	ENST00000308783	ENST00000304460		ChiTaRS3.1			BF379627	KDM2A	chr11	66964358	-	SLC6A19	chr5	1202933	+
intron-intron	ENST00000530342	ENST00000304460		ChiTaRS3.1			BF379627	KDM2A	chr11	66964358	-	SLC6A19	chr5	1202933	+
intron-3UTR	ENST00000378330	ENST00000242719		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-intron	ENST00000378330	ENST00000494873		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-3UTR	ENST00000301030	ENST00000242719		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-intron	ENST00000301030	ENST00000494873		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-3UTR	ENST00000563291	ENST00000242719		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-intron	ENST00000563291	ENST00000494873		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-3UTR	ENST00000567736	ENST00000242719		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-intron	ENST00000567736	ENST00000494873		ChiTaRS3.1			D44707	ANKRD11	chr16	89527375	-	RNF11	chr1	51738485	-
intron-intron	ENST00000602540	ENST00000602540		ChiTaRS3.1			BF001807	PHLDA1	chr12	76424701	+	PHLDA1	chr12	76424031	+
intron-intron	ENST00000602540	ENST00000266671		ChiTaRS3.1			BF001807	PHLDA1	chr12	76424701	+	PHLDA1	chr12	76424031	+
intron-intron	ENST00000266671	ENST00000602540		ChiTaRS3.1			BF001807	PHLDA1	chr12	76424701	+	PHLDA1	chr12	76424031	+
intron-intron	ENST00000266671	ENST00000266671		ChiTaRS3.1			BF001807	PHLDA1	chr12	76424701	+	PHLDA1	chr12	76424031	+
intron-intron	ENST00000592983	ENST00000396420		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371984		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371992		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000535522		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-intron	ENST00000592983	ENST00000371986		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-5UTR	ENST00000592983	ENST00000485714		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000396420		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371984		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371992		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000535522		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-intron	ENST00000328396	ENST00000371986		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
3UTR-5UTR	ENST00000328396	ENST00000485714		ChiTaRS3.1			AW272407	PIGW	chr17	34894873	-	POMGNT1	chr1	46656022	+
intron-3CDS	ENST00000572887	ENST00000242783		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000572887	ENST00000587429		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000572887	ENST00000342216		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-3CDS	ENST00000219240	ENST00000242783		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000219240	ENST00000587429		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000219240	ENST00000342216		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-3CDS	ENST00000573922	ENST00000242783		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000573922	ENST00000587429		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
intron-intron	ENST00000573922	ENST00000342216		ChiTaRS3.1			BF837427	DHODH	chr16	72051051	+	PKN1	chr19	14574947	-
5CDS-3UTR	ENST00000369485	ENST00000546390		ChiTaRS3.1			BG191557	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000265607	ENST00000546390		ChiTaRS3.1			BG191557	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000538899	ENST00000546390		ChiTaRS3.1			BG191557	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
5CDS-3UTR	ENST00000369475	ENST00000546390		ChiTaRS3.1			BG191557	RNGTT	chr6	89479493	-	OR7E47P	chr12	52501162	+
intron-3CDS	ENST00000223127	ENST00000263980		ChiTaRS3.1			BQ369217	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-intron	ENST00000223127	ENST00000490329		ChiTaRS3.1			BQ369217	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-5UTR	ENST00000223127	ENST00000545949		ChiTaRS3.1			BQ369217	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-5UTR	ENST00000223127	ENST00000374086		ChiTaRS3.1			BQ369217	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
3UTR-3UTR	ENST00000380833	ENST00000380833		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
3UTR-intron	ENST00000380833	ENST00000380829		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
3UTR-intron	ENST00000380833	ENST00000421085		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-3UTR	ENST00000380829	ENST00000380833		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-intron	ENST00000380829	ENST00000380829		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-intron	ENST00000380829	ENST00000421085		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-3UTR	ENST00000421085	ENST00000380833		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-intron	ENST00000421085	ENST00000380829		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-intron	ENST00000421085	ENST00000421085		ChiTaRS3.1			AW900067	CLCN4	chrX	10205243	-	CLCN4	chrX	10205198	+
intron-3CDS	ENST00000296137	ENST00000314888		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-3CDS	ENST00000296137	ENST00000540444		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-intron	ENST00000296137	ENST00000464379		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-3CDS	ENST00000535325	ENST00000314888		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-3CDS	ENST00000535325	ENST00000540444		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-intron	ENST00000535325	ENST00000464379		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-3CDS	ENST00000438446	ENST00000314888		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-3CDS	ENST00000438446	ENST00000540444		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-intron	ENST00000438446	ENST00000464379		ChiTaRS3.1			BI023087	FYCO1	chr3	45962803	-	TLN1	chr9	35717321	+
intron-5UTR	ENST00000338316	ENST00000270792		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-intron	ENST00000338316	ENST00000319041		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-5UTR	ENST00000537121	ENST00000270792		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-intron	ENST00000537121	ENST00000319041		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-5UTR	ENST00000513693	ENST00000270792		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-intron	ENST00000513693	ENST00000319041		ChiTaRS3.1			BQ896787	ADCY2	chr1	152009422	+	SH3BGRL3	chr1	26606586	+
intron-3CDS	ENST00000395388	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000395388	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000395388	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000395388	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000395388	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000374982	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000374982	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000374982	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000374982	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000374982	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383127	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383127	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383127	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383127	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000383127	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000459705	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000459705	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000459705	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000459705	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000459705	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000434866	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000434866	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000434866	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000434866	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000434866	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000416883	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000416883	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000416883	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000416883	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000416883	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000481943	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000481943	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000481943	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000481943	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000481943	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000411505	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000411505	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000411505	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000411505	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000411505	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000414698	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000414698	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000414698	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000414698	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000414698	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000546379	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000546379	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000546379	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000546379	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000546379	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000493431	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000493431	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000493431	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000493431	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000493431	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000418111	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000418111	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000418111	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000418111	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000418111	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383259	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383259	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383259	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383259	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000383259	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000551750	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000551750	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000551750	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000551750	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000551750	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000461633	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000461633	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000461633	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000461633	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000461633	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383258	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000383258	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383258	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000383258	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000383258	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000442960	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000442960	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000442960	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000442960	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000442960	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000549531	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000549531	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000549531	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000549531	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000549531	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000482781	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000482781	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000482781	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000482781	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000482781	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000415767	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000415767	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000415767	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000415767	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000415767	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000411524	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000411524	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000411524	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000411524	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3UTR	ENST00000411524	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000553193	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000553193	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000553193	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000553193	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3UTR	ENST00000553193	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000498597	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3CDS	ENST00000498597	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000498597	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-intron	ENST00000498597	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
intron-3UTR	ENST00000498597	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000427753	ENST00000260970		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3CDS	ENST00000427753	ENST00000409714		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000427753	ENST00000462903		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-intron	ENST00000427753	ENST00000448752		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
3UTR-3UTR	ENST00000427753	ENST00000482772		ChiTaRS3.1			BE177297	HLA-DRA	chr6	3759319	+	PPIG	chr2	170493305	-
In-frame	ENST00000322764	ENST00000240423		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
In-frame	ENST00000322764	ENST00000427946		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
In-frame	ENST00000322764	ENST00000455200		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000449423	ENST00000240423		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000449423	ENST00000427946		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000449423	ENST00000455200		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000392910	ENST00000240423		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000392910	ENST00000427946		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
Frame-shit	ENST00000392910	ENST00000455200		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
intron-3CDS	ENST00000477373	ENST00000240423		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
intron-3CDS	ENST00000477373	ENST00000427946		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
intron-3CDS	ENST00000477373	ENST00000455200		ChiTaRS3.1			AI193067	ZYX	chr7	143087770	-	NCAPH	chr2	97020057	-
intron-3CDS	ENST00000392951	ENST00000392951		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-3CDS	ENST00000392951	ENST00000530649		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-3CDS	ENST00000392951	ENST00000532870		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000392951		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000530649		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000532870		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000392951		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000530649		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000532870		ChiTaRS3.1			AA658907	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-intron	ENST00000252242	ENST00000341832		ChiTaRS3.1			BF917097	KRT5	chr12	52911940	+	CDK11B	chr1	1650812	+
intron-intron	ENST00000252242	ENST00000340677		ChiTaRS3.1			BF917097	KRT5	chr12	52911940	+	CDK11B	chr1	1650812	+
intron-intron	ENST00000252242	ENST00000407249		ChiTaRS3.1			BF917097	KRT5	chr12	52911940	+	CDK11B	chr1	1650812	+
intron-intron	ENST00000252242	ENST00000317673		ChiTaRS3.1			BF917097	KRT5	chr12	52911940	+	CDK11B	chr1	1650812	+
3UTR-3CDS	ENST00000227507	ENST00000227507		ChiTaRS3.1			W24017	CCND1	chr11	69467944	+	CCND1	chr11	69462837	+
3UTR-3UTR	ENST00000227507	ENST00000536559		ChiTaRS3.1			W24017	CCND1	chr11	69467944	+	CCND1	chr11	69462837	+
intron-3CDS	ENST00000536559	ENST00000227507		ChiTaRS3.1			W24017	CCND1	chr11	69467944	+	CCND1	chr11	69462837	+
intron-3UTR	ENST00000536559	ENST00000536559		ChiTaRS3.1			W24017	CCND1	chr11	69467944	+	CCND1	chr11	69462837	+
intron-3CDS	ENST00000438045	ENST00000438045		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000438045	ENST00000248633		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000438045	ENST00000428214		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3UTR	ENST00000438045	ENST00000541751		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000248633	ENST00000438045		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000248633	ENST00000248633		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000248633	ENST00000428214		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3UTR	ENST00000248633	ENST00000541751		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000428214	ENST00000438045		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000428214	ENST00000248633		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000428214	ENST00000428214		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3UTR	ENST00000428214	ENST00000541751		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000541751	ENST00000438045		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000541751	ENST00000248633		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3CDS	ENST00000541751	ENST00000428214		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
intron-3UTR	ENST00000541751	ENST00000541751		ChiTaRS3.1			N22627	PEX1	chr7	92140301	+	PEX1	chr7	92129084	-
5CDS-intron	ENST00000399262	ENST00000284268		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5CDS-intron	ENST00000399262	ENST00000535119		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5CDS-intron	ENST00000399262	ENST00000503939		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
intron-intron	ENST00000402544	ENST00000284268		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
intron-intron	ENST00000402544	ENST00000535119		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
intron-intron	ENST00000402544	ENST00000503939		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000399251	ENST00000284268		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000399251	ENST00000535119		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000399251	ENST00000503939		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000542921	ENST00000284268		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000542921	ENST00000535119		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000542921	ENST00000503939		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000489372	ENST00000284268		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000489372	ENST00000535119		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
5UTR-intron	ENST00000489372	ENST00000503939		ChiTaRS3.1			DA252327	JMJD1C	chr10	65024411	-	ANKH	chr5	14758727	-
3UTR-3UTR	ENST00000513761	ENST00000513761		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
3UTR-intron	ENST00000513761	ENST00000347613		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
3UTR-intron	ENST00000513761	ENST00000360642		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
3UTR-intron	ENST00000513761	ENST00000504131		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
3UTR-intron	ENST00000513761	ENST00000506924		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-3UTR	ENST00000347613	ENST00000513761		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000347613	ENST00000347613		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000347613	ENST00000360642		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000347613	ENST00000504131		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000347613	ENST00000506924		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-3UTR	ENST00000360642	ENST00000513761		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000360642	ENST00000347613		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000360642	ENST00000360642		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000360642	ENST00000504131		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000360642	ENST00000506924		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-3UTR	ENST00000504131	ENST00000513761		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000504131	ENST00000347613		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000504131	ENST00000360642		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000504131	ENST00000504131		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000504131	ENST00000506924		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-3UTR	ENST00000506924	ENST00000513761		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000506924	ENST00000347613		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000506924	ENST00000360642		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000506924	ENST00000504131		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000506924	ENST00000506924		ChiTaRS3.1			AA525427	CLCN3	chr4	170642963	+	CLCN3	chr4	170642842	-
intron-intron	ENST00000537343	ENST00000544260		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000381869		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000381861		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000262102		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000519263		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000400046		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000297488		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000518713		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000537343	ENST00000381862		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000544260		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000381869		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000381861		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000262102		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000519263		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000400046		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000297488		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000518713		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000295238	ENST00000381862		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000544260		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000381869		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000381861		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000262102		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000519263		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000400046		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000297488		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000518713		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-intron	ENST00000264157	ENST00000381862		ChiTaRS3.1			BF828107	CCNT2	chr2	135697537	+	MTUS1	chr8	17527797	+
intron-3UTR	ENST00000234590	ENST00000234590		ChiTaRS3.1			BG036247	ENO1	chr1	8921478	+	ENO1	chr1	8921229	-
intron-intron	ENST00000297591	ENST00000393469		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000297591	ENST00000423114		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000297591	ENST00000469902		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000297591	ENST00000314584		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000297591	ENST00000430155		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000297591	ENST00000465475		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000393469		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000423114		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000469902		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000314584		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000430155		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000437199	ENST00000465475		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000393469		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000423114		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000469902		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000314584		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000430155		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000421249	ENST00000465475		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000393469		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000423114		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000469902		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000314584		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000430155		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-intron	ENST00000523405	ENST00000465475		ChiTaRS3.1			CD244247	KIAA1429	chr8	95524285	-	SLC12A8	chr3	124948203	-
intron-3UTR	ENST00000415083	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000415083	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000542420	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000542420	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000542743	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000542743	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000539849	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000539849	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000269137	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000269137	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000545952	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000545952	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-3UTR	ENST00000585241	ENST00000257700		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
intron-intron	ENST00000585241	ENST00000477285		ChiTaRS3.1			BF907597	SS18	chr18	23646961	+	RINT1	chr7	105207864	+
In-frame	ENST00000525967	ENST00000323686		ChiTaRS3.1			BF869437	NPEPL1	chr20	57290264	+	RBM15B	chr3	51430625	-
Frame-shit	ENST00000525817	ENST00000323686		ChiTaRS3.1			BF869437	NPEPL1	chr20	57290264	+	RBM15B	chr3	51430625	-
Frame-shit	ENST00000356091	ENST00000323686		ChiTaRS3.1			BF869437	NPEPL1	chr20	57290264	+	RBM15B	chr3	51430625	-
intron-3UTR	ENST00000367800	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000367800	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367800	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000457866	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000457866	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000457866	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000417892	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000417892	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000417892	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000327035	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000327035	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000327035	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000488690	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000488690	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000488690	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000367798	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000367798	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000367798	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000528103	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000528103	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000528103	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000534469	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000534469	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000534469	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000531527	ENST00000367800		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-3UTR	ENST00000531527	ENST00000457866		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000417892		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000327035		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000488690		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000367798		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000528103		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000534469		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
intron-intron	ENST00000531527	ENST00000531527		ChiTaRS3.1			CN478957	AHI1	chr6	135605233	+	AHI1	chr6	135605600	-
3UTR-5UTR	ENST00000265295	ENST00000265295		ChiTaRS3.1			AK074227	SPDL1	chr5	169031770	+	SPDL1	chr5	169010791	+
3UTR-3UTR	ENST00000265295	ENST00000510751		ChiTaRS3.1			AK074227	SPDL1	chr5	169031770	+	SPDL1	chr5	169010791	+
intron-5UTR	ENST00000510751	ENST00000265295		ChiTaRS3.1			AK074227	SPDL1	chr5	169031770	+	SPDL1	chr5	169010791	+
intron-3UTR	ENST00000510751	ENST00000510751		ChiTaRS3.1			AK074227	SPDL1	chr5	169031770	+	SPDL1	chr5	169010791	+
3UTR-3UTR	ENST00000318782	ENST00000318782		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000318782	ENST00000293978		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000318782	ENST00000576565		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000318782	ENST00000572687		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000318782	ENST00000574988		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000293978	ENST00000318782		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000293978	ENST00000293978		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000293978	ENST00000576565		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000293978	ENST00000572687		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000293978	ENST00000574988		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000576565	ENST00000318782		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000576565	ENST00000293978		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-intron	ENST00000576565	ENST00000576565		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000576565	ENST00000572687		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-intron	ENST00000576565	ENST00000574988		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000572687	ENST00000318782		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000572687	ENST00000293978		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000572687	ENST00000576565		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-3UTR	ENST00000572687	ENST00000572687		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
3UTR-intron	ENST00000572687	ENST00000574988		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000574988	ENST00000318782		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000574988	ENST00000293978		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-intron	ENST00000574988	ENST00000576565		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3UTR	ENST00000574988	ENST00000572687		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-intron	ENST00000574988	ENST00000574988		ChiTaRS3.1			BM792467	PAQR4	chr16	3022354	-	PAQR4	chr16	3022438	+
intron-3CDS	ENST00000393791	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393791	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000393791	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000356411	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000356411	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000356411	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000424809	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000424809	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000424809	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393797	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393797	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000393797	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550288	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550288	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000550288	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000430041	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000430041	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000430041	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550454	ENST00000537081		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550454	ENST00000257861		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000550454	ENST00000550083		ChiTaRS3.1			BC004197	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3UTR	ENST00000339208	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000339208	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000339208	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000346661	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000346661	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000346661	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000345615	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000345615	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000345615	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000502449	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000502449	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000502449	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000591288	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000591288	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000591288	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000394378	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000394378	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000394378	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000585472	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000585472	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000585472	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000588194	ENST00000339208		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-3UTR	ENST00000588194	ENST00000346661		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000345615		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000502449		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000591288		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000394378		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000585472		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000588194	ENST00000588194		ChiTaRS3.1			BF727217	SYNRG	chr17	35875858	-	SYNRG	chr17	35877061	-
intron-intron	ENST00000509122	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000509122	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000509122	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000509122	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000509122	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000512981	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000512981	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000512981	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000512981	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000512981	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000396448	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000396448	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000396448	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000396448	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000396448	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000264312	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000264312	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000264312	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000264312	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000264312	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000381473	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000381473	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000381473	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000381473	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000381473	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000444354	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000444354	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000444354	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000444354	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000444354	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000506801	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000506801	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000506801	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000506801	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000506801	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000425583	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000425583	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000425583	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000425583	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000425583	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000508293	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000508293	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000508293	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000508293	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000508293	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000513391	ENST00000372564		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000513391	ENST00000372559		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000513391	ENST00000372554		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000513391	ENST00000417224		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
intron-intron	ENST00000513391	ENST00000416629		ChiTaRS3.1			AI018597	OCIAD1	chr4	48862220	+	SH3GLB2	chr9	131783369	+
5CDS-5UTR	ENST00000409535	ENST00000588552		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000262963		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000372412		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000348075		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000357368		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000353284		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000587303		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000588012		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-5UTR	ENST00000409535	ENST00000592099		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5CDS-intron	ENST00000409535	ENST00000590509		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000588552		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000262963		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000372412		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000348075		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000357368		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000353284		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000587303		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000588012		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-5UTR	ENST00000296477	ENST00000592099		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
5UTR-intron	ENST00000296477	ENST00000590509		ChiTaRS3.1			BI046547	RAD54L2	chr3	51664862	-	PTPRS	chr19	5218474	-
intron-3UTR	ENST00000331925	ENST00000331925		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000331925	ENST00000573283		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000331925	ENST00000575842		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000331925	ENST00000575087		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000573283	ENST00000331925		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000573283	ENST00000573283		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000573283	ENST00000575842		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000573283	ENST00000575087		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575842	ENST00000331925		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575842	ENST00000573283		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575842	ENST00000575842		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575842	ENST00000575087		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575087	ENST00000331925		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575087	ENST00000573283		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575087	ENST00000575842		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3UTR	ENST00000575087	ENST00000575087		ChiTaRS3.1			BQ431217	ACTG1	chr17	79477524	+	ACTG1	chr17	79477443	-
intron-3CDS	ENST00000378364	ENST00000378364		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-3CDS	ENST00000378364	ENST00000426324		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-intron	ENST00000378364	ENST00000563655		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-3CDS	ENST00000426324	ENST00000378364		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-3CDS	ENST00000426324	ENST00000426324		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-intron	ENST00000426324	ENST00000563655		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-3CDS	ENST00000563655	ENST00000378364		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-3CDS	ENST00000563655	ENST00000426324		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
intron-intron	ENST00000563655	ENST00000563655		ChiTaRS3.1			BG475137	APRT	chr16	88876939	+	APRT	chr16	88876876	-
5CDS-intron	ENST00000369252	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000369252	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000369252	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000369252	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000369252	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000533213	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000533213	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000533213	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000533213	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000533213	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000277895	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000277895	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000277895	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000277895	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
5CDS-intron	ENST00000277895	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369266	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369266	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369266	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369266	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369266	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000392952	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000392952	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000392952	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000392952	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000392952	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369253	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369253	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369253	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369253	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000369253	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000477638	ENST00000598981		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000477638	ENST00000451706		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000477638	ENST00000456120		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000477638	ENST00000610133		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000477638	ENST00000608667		ChiTaRS3.1			BI828247	ABLIM1	chr10	116331056	-	WDR11-AS1	chr10	122583134	-
intron-intron	ENST00000394152	ENST00000394152		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000394152	ENST00000334715		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000394152	ENST00000262941		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000394152	ENST00000466948		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000334715	ENST00000394152		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000334715	ENST00000334715		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000334715	ENST00000262941		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000334715	ENST00000466948		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000262941	ENST00000394152		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000262941	ENST00000334715		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000262941	ENST00000262941		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000262941	ENST00000466948		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000466948	ENST00000394152		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000466948	ENST00000334715		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000466948	ENST00000262941		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000466948	ENST00000466948		ChiTaRS3.1			AW840227	ZSCAN25	chr7	99245647	+	ZSCAN25	chr7	99245756	-
intron-intron	ENST00000356083	ENST00000356083		ChiTaRS3.1			AF216077	COL27A1	chr9	116975596	-	COL27A1	chr9	116977121	+
intron-intron	ENST00000356083	ENST00000477421		ChiTaRS3.1			AF216077	COL27A1	chr9	116975596	-	COL27A1	chr9	116977121	+
intron-intron	ENST00000477421	ENST00000356083		ChiTaRS3.1			AF216077	COL27A1	chr9	116975596	-	COL27A1	chr9	116977121	+
intron-intron	ENST00000477421	ENST00000477421		ChiTaRS3.1			AF216077	COL27A1	chr9	116975596	-	COL27A1	chr9	116977121	+
Frame-shit	ENST00000345843	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000345843	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000345843	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000345843	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000345843	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000345843	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000345843	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000345843	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000345843	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000342295	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342295	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342295	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000342295	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342295	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342295	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342295	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342295	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342295	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000361572	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000361572	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000361572	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000361572	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000361572	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000361572	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000361572	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000361572	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000361572	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000348160	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000348160	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000348160	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000348160	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000348160	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000348160	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000348160	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000348160	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000348160	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000355476	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000355476	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000355476	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000355476	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000355476	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000355476	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000355476	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000355476	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000355476	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000511401	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000511401	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000511401	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000511401	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000511401	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-intron	ENST00000511401	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-intron	ENST00000511401	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-intron	ENST00000511401	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-intron	ENST00000511401	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000507561	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000507561	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000507561	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000507561	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000507561	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000507561	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000507561	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000507561	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000507561	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-3CDS	ENST00000504907	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-3CDS	ENST00000504907	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-3CDS	ENST00000504907	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-3CDS	ENST00000504907	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-3CDS	ENST00000504907	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-intron	ENST00000504907	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-intron	ENST00000504907	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-intron	ENST00000504907	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
3UTR-intron	ENST00000504907	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342320	ENST00000345843		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342320	ENST00000342295		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
In-frame	ENST00000342320	ENST00000361572		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342320	ENST00000348160		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
Frame-shit	ENST00000342320	ENST00000355476		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342320	ENST00000511401		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342320	ENST00000507561		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342320	ENST00000504907		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
5CDS-intron	ENST00000342320	ENST00000342320		ChiTaRS3.1			BM994447	RBPJ	chr4	26432443	-	RBPJ	chr4	26432364	+
intron-3CDS	ENST00000409251	ENST00000409251		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000409251	ENST00000295718		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000409251	ENST00000423636		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-intron	ENST00000409251	ENST00000497977		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000295718	ENST00000409251		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000295718	ENST00000295718		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000295718	ENST00000423636		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-intron	ENST00000295718	ENST00000497977		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000423636	ENST00000409251		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000423636	ENST00000295718		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000423636	ENST00000423636		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-intron	ENST00000423636	ENST00000497977		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000497977	ENST00000409251		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000497977	ENST00000295718		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-3CDS	ENST00000497977	ENST00000423636		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-intron	ENST00000497977	ENST00000497977		ChiTaRS3.1			BP309887	PTPRN	chr2	220154501	-	PTPRN	chr2	220164961	-
intron-intron	ENST00000456329	ENST00000299576		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000309377		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000309357		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000529876		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000525005		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000534506		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000396648		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000456329	ENST00000534147		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000299576		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000309377		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000309357		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000529876		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000525005		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000534506		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000396648		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000523662	ENST00000534147		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000299576		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000309377		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000309357		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000529876		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000525005		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000534506		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000396648		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
intron-intron	ENST00000307063	ENST00000534147		ChiTaRS3.1			AK223377	PWWP2A	chr5	159525069	-	AKIP1	chr11	8954525	-
5CDS-intron	ENST00000298119	ENST00000305747		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
5CDS-intron	ENST00000298119	ENST00000392687		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000555279	ENST00000305747		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000555279	ENST00000392687		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000554120	ENST00000305747		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000554120	ENST00000392687		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000554171	ENST00000305747		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
intron-intron	ENST00000554171	ENST00000392687		ChiTaRS3.1			M86087	LRFN5	chr14	42361085	+	CERS6	chr2	169587955	+
5CDS-intron	ENST00000264335	ENST00000451940		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000456104		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000433530		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000447424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000433920		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000446751		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000420424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000413722		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000417860		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000413961		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000458739		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000264335	ENST00000366446		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000451940		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000456104		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000433530		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000447424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000433920		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000446751		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000420424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000413722		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000417860		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000413961		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000458739		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
5CDS-intron	ENST00000571732	ENST00000366446		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000451940		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000456104		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000433530		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000447424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000433920		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000446751		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000420424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000413722		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000417860		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000413961		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000458739		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000573026	ENST00000366446		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000451940		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000456104		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000433530		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000447424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000433920		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000446751		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000420424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000413722		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000417860		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000413961		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000458739		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000575977	ENST00000366446		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000451940		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000456104		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000433530		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000447424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000433920		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000446751		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000420424		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000413722		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000417860		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000413961		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000458739		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-intron	ENST00000498643	ENST00000366446		ChiTaRS3.1			JN999698	YWHAE	chr17	1257505	-	NUTM2A-AS1	chr10	88988019	+
intron-3UTR	ENST00000409402	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000409402	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000410092	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000410092	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000309836	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000309836	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000453447	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000453447	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000383356	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000383356	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000464481	ENST00000335247		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3UTR	ENST00000464481	ENST00000409327		ChiTaRS3.1			BF833367	SPIRE1	chr18	12454446	+	CYP27C1	chr2	127944765	+
intron-3CDS	ENST00000483725	ENST00000483725		ChiTaRS3.1			DR978197	KIAA0408	chr6	127775232	+	KIAA0408	chr6	127775085	-
intron-intron	ENST00000404479	ENST00000404479		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-3UTR	ENST00000404479	ENST00000318709		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000404479	ENST00000459629		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000404479	ENST00000409301		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
3UTR-intron	ENST00000318709	ENST00000404479		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
3UTR-3UTR	ENST00000318709	ENST00000318709		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
3UTR-intron	ENST00000318709	ENST00000459629		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
3UTR-intron	ENST00000318709	ENST00000409301		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000459629	ENST00000404479		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-3UTR	ENST00000459629	ENST00000318709		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000459629	ENST00000459629		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000459629	ENST00000409301		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000409301	ENST00000404479		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-3UTR	ENST00000409301	ENST00000318709		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000409301	ENST00000459629		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000409301	ENST00000409301		ChiTaRS3.1			CA314537	AVL9	chr7	32628083	-	AVL9	chr7	32627743	+
intron-intron	ENST00000396000	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000396000	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000396000	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000396000	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000396000	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000396000	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000262735	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000407236	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000481567	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000402126	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000396000		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000262735		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000407236		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000481567		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000402126		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
intron-intron	ENST00000434345	ENST00000434345		ChiTaRS3.1			BF911067	PPARA	chr22	46559225	+	PPARA	chr22	46553064	+
3UTR-3CDS	ENST00000250111	ENST00000176643		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-3CDS	ENST00000250111	ENST00000581518		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-3CDS	ENST00000250111	ENST00000395575		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-3CDS	ENST00000250111	ENST00000339618		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-3CDS	ENST00000250111	ENST00000579855		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-intron	ENST00000250111	ENST00000571163		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
3UTR-intron	ENST00000250111	ENST00000574597		ChiTaRS3.1			AI769187	ATP1B2	chr17	7560293	-	ALDH3A2	chr17	19552303	-
intron-3UTR	ENST00000275227	ENST00000275227		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000275227	ENST00000538764		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000275227	ENST00000367918		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000275227	ENST00000460518		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-3UTR	ENST00000538764	ENST00000275227		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000538764	ENST00000538764		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000538764	ENST00000367918		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000538764	ENST00000460518		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-3UTR	ENST00000367918	ENST00000275227		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000367918	ENST00000538764		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000367918	ENST00000367918		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000367918	ENST00000460518		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-3UTR	ENST00000460518	ENST00000275227		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000460518	ENST00000538764		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000460518	ENST00000367918		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000460518	ENST00000460518		ChiTaRS3.1			BF940897	SLC18B1	chr6	133119773	+	SLC18B1	chr6	133091307	-
intron-intron	ENST00000445937	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000445937	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000531443	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000517566	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000452423	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000442977	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521963	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000312046	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000449762	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000297447	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000521592	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000445937		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000531443		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000517566		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000452423		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000442977		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000521963		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000312046		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000449762		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000297447		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000521592		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-intron	ENST00000497705	ENST00000497705		ChiTaRS3.1			BF818667	OXR1	chr8	107694233	-	OXR1	chr8	107732193	+
intron-3CDS	ENST00000302503	ENST00000302503		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000302503	ENST00000542981		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000302503	ENST00000534074		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000542981	ENST00000302503		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000542981	ENST00000542981		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000542981	ENST00000534074		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000534074	ENST00000302503		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-3CDS	ENST00000534074	ENST00000542981		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
intron-5UTR	ENST00000534074	ENST00000534074		ChiTaRS3.1			AI565357	MTCH2	chr11	47640473	+	MTCH2	chr11	47644328	-
3UTR-3UTR	ENST00000491148	ENST00000491148		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000282957		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000491148	ENST00000498639		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000491148		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000282957		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000282957	ENST00000498639		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000491148		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000282957		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
3UTR-3UTR	ENST00000498639	ENST00000498639		ChiTaRS3.1			T11417	CPB1	chr3	148577906	-	CPB1	chr3	148577880	+
intron-intron	ENST00000265136	ENST00000265136		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000395542		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000395540		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000441453		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000265136		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000395542		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000395540		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000441453		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000265136		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000395542		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000395540		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000441453		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000265136		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000395542		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000395540		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000441453		ChiTaRS3.1			AW590697	COBL	chr7	51357167	+	COBL	chr7	51299873	+
3UTR-intron	ENST00000431809	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
3UTR-intron	ENST00000431809	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
3UTR-intron	ENST00000397582	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
3UTR-intron	ENST00000397582	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
intron-intron	ENST00000524468	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
intron-intron	ENST00000524468	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
5CDS-intron	ENST00000344375	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
5CDS-intron	ENST00000344375	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
5CDS-intron	ENST00000397583	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
5CDS-intron	ENST00000397583	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
3UTR-intron	ENST00000454668	ENST00000014914		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
3UTR-intron	ENST00000454668	ENST00000542056		ChiTaRS3.1			AW939967	RASSF7	chr11	563593	-	GPRC5A	chr12	13058681	+
intron-intron	ENST00000404583	ENST00000581865		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404583	ENST00000312655		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404583	ENST00000585166		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000581865		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000312655		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000314567	ENST00000585166		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000581865		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000312655		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000404744	ENST00000585166		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000581865		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000312655		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
intron-intron	ENST00000475605	ENST00000585166		ChiTaRS3.1			BE552317	CDPF1	chr22	46640118	+	YPEL2	chr17	57473040	-
3UTR-3CDS	ENST00000273398	ENST00000457573		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
3UTR-3CDS	ENST00000273398	ENST00000341333		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
3UTR-3CDS	ENST00000273398	ENST00000415259		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
3UTR-3CDS	ENST00000273398	ENST00000395057		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
3UTR-3CDS	ENST00000273398	ENST00000416589		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
3UTR-3UTR	ENST00000273398	ENST00000463857		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000538620	ENST00000457573		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000538620	ENST00000341333		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000538620	ENST00000415259		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000538620	ENST00000395057		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000538620	ENST00000416589		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3UTR	ENST00000538620	ENST00000463857		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000461496	ENST00000457573		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000461496	ENST00000341333		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000461496	ENST00000415259		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000461496	ENST00000395057		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000461496	ENST00000416589		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3UTR	ENST00000461496	ENST00000463857		ChiTaRS3.1			AF172327	ATP6V1A	chr3	113530194	-	TEX264	chr3	51733574	+
intron-3CDS	ENST00000369582	ENST00000369582		ChiTaRS3.1			AA441787	CGA	chr6	87795308	+	CGA	chr6	87804819	-
5CDS-intron	ENST00000402696	ENST00000233336		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000402696	ENST00000460450		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000264998	ENST00000233336		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-intron	ENST00000264998	ENST00000460450		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
intron-intron	ENST00000475382	ENST00000233336		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
intron-intron	ENST00000475382	ENST00000460450		ChiTaRS3.1			BE766507	TF	chr3	133478137	-	TTL	chr2	113280709	+
5CDS-3UTR	ENST00000374272	ENST00000466801		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
5CDS-3UTR	ENST00000374272	ENST00000409321		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
5CDS-3UTR	ENST00000374272	ENST00000409115		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
5CDS-3UTR	ENST00000374272	ENST00000341369		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
5CDS-3UTR	ENST00000374272	ENST00000409683		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
5CDS-3UTR	ENST00000374272	ENST00000410064		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000466801		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000409321		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000409115		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000341369		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000409683		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3UTR	ENST00000483052	ENST00000410064		ChiTaRS3.1			BC015717	TRIM63	chr1	26383698	-	PTMA	chr2	232577207	+
intron-3CDS	ENST00000357214	ENST00000357214		ChiTaRS3.1			BE276277	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000357214	ENST00000468598		ChiTaRS3.1			BE276277	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-3CDS	ENST00000468598	ENST00000357214		ChiTaRS3.1			BE276277	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000468598	ENST00000468598		ChiTaRS3.1			BE276277	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-3CDS	ENST00000589935	ENST00000392133		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000589935	ENST00000392132		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000589935	ENST00000471649		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000357574	ENST00000392133		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000357574	ENST00000392132		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000357574	ENST00000471649		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000254442	ENST00000392133		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3CDS	ENST00000254442	ENST00000392132		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-3UTR	ENST00000254442	ENST00000471649		ChiTaRS3.1			BF352347	WDR7	chr18	54483385	+	XRCC5	chr2	217005908	+
intron-5UTR	ENST00000300030	ENST00000355151		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000397496		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000555345		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000432849		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000553711		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000397505		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000557221		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000300030	ENST00000311892		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000300030	ENST00000556840		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000300030	ENST00000461594		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000300030	ENST00000555536		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000355151		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000397496		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000555345		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000432849		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000553711		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000397505		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000557221		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000558779	ENST00000311892		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000558779	ENST00000556840		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000558779	ENST00000461594		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000558779	ENST00000555536		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000355151		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000397496		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000555345		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000432849		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000553711		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000397505		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000557221		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000380290	ENST00000311892		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000380290	ENST00000556840		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000380290	ENST00000461594		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000380290	ENST00000555536		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000355151		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000397496		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000555345		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000432849		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000553711		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000397505		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000557221		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000557835	ENST00000311892		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000557835	ENST00000556840		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000557835	ENST00000461594		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000557835	ENST00000555536		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000355151		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000397496		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000555345		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000432849		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000553711		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000397505		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000557221		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-5UTR	ENST00000559950	ENST00000311892		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000559950	ENST00000556840		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000559950	ENST00000461594		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000559950	ENST00000555536		ChiTaRS3.1			CK826457	FAM96A	chr15	64366473	+	MRPL52	chr14	23299118	+
intron-intron	ENST00000262367	ENST00000406337		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000262367	ENST00000265713		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000262367	ENST00000396930		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000262367	ENST00000485568		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000382070	ENST00000406337		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000382070	ENST00000265713		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000382070	ENST00000396930		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000382070	ENST00000485568		ChiTaRS3.1			AJ315157	CREBBP	chr16	3926071	-	KAT6A	chr8	41793757	-
intron-intron	ENST00000426333	ENST00000199940		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000426333	ENST00000360351		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000361559		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000426333	ENST00000392194		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000447185		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000426333	ENST00000475600		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000199940		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000592576	ENST00000360351		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000361559		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000592576	ENST00000392194		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000447185		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000592576	ENST00000475600		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000199940		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000591382	ENST00000360351		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000361559		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000591382	ENST00000392194		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000447185		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000591382	ENST00000475600		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000199940		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000402521	ENST00000360351		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000361559		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000402521	ENST00000392194		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000447185		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000402521	ENST00000475600		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000199940		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000589211	ENST00000360351		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000361559		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-3UTR	ENST00000589211	ENST00000392194		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000447185		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
intron-intron	ENST00000589211	ENST00000475600		ChiTaRS3.1			T07427	EFTUD2	chr17	42956884	-	MAP2	chr2	210596373	+
3UTR-3UTR	ENST00000308278	ENST00000308278		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-intron	ENST00000308278	ENST00000572018		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000308278	ENST00000301324		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000308278	ENST00000570892		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
intron-3UTR	ENST00000572018	ENST00000308278		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
intron-intron	ENST00000572018	ENST00000572018		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
intron-3UTR	ENST00000572018	ENST00000301324		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
intron-3UTR	ENST00000572018	ENST00000570892		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000301324	ENST00000308278		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-intron	ENST00000301324	ENST00000572018		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000301324	ENST00000301324		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000301324	ENST00000570892		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000570892	ENST00000308278		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-intron	ENST00000570892	ENST00000572018		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000570892	ENST00000301324		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
3UTR-3UTR	ENST00000570892	ENST00000570892		ChiTaRS3.1			BG111497	FAM57A	chr17	645000	-	FAM57A	chr17	645043	+
intron-3UTR	ENST00000394894	ENST00000394886		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-intron	ENST00000394894	ENST00000394884		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-intron	ENST00000394894	ENST00000505120		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-3UTR	ENST00000508792	ENST00000394886		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-intron	ENST00000508792	ENST00000394884		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-intron	ENST00000508792	ENST00000505120		ChiTaRS3.1			BU678667	KIF20A	chr5	137523506	+	CDC23	chr5	137523613	-
intron-3UTR	ENST00000466387	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000466387	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000496558	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000496558	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000361291	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000361291	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000402739	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000402739	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000540488	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000540488	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000541047	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000541047	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000343114	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000343114	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000496251	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000496251	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000409266	ENST00000272638		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3UTR	ENST00000409266	ENST00000490163		ChiTaRS3.1			AA278207	CTNNA2	chr2	80414815	-	UBXN4	chr2	136540628	-
intron-3CDS	ENST00000520810	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520810	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520810	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520810	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000520810	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000416505	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000416505	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000416505	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000416505	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000416505	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000519735	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000519735	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000519735	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000519735	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000519735	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520835	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520835	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520835	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000520835	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000520835	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000379708	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000379708	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000379708	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000379708	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000379708	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000518983	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000518983	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000518983	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000518983	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000518983	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522147	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522147	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522147	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522147	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000522147	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522785	ENST00000205402		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522785	ENST00000537148		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522785	ENST00000440410		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3CDS	ENST00000522785	ENST00000437604		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-intron	ENST00000522785	ENST00000494441		ChiTaRS3.1			CV348467	IKBKB	chr8	42181155	-	DLD	chr7	107557773	-
intron-3UTR	ENST00000373865	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373855	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000238341	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373850	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373847	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373845	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373844	ENST00000534336		ChiTaRS3.1			DW411997	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-intron	ENST00000539801	ENST00000539801		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000381652		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000544510		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000539801	ENST00000487310		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000539801		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000381652		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000544510		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000381652	ENST00000487310		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000539801		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000381652		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000544510		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000544510	ENST00000487310		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000539801		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000381652		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000544510		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-intron	ENST00000487310	ENST00000487310		ChiTaRS3.1			BF890967	JAK2	chr9	4995728	-	JAK2	chr9	4998504	+
intron-3UTR	ENST00000238682	ENST00000238682		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000238682	ENST00000556285		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000238682	ENST00000556674		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-3UTR	ENST00000556285	ENST00000238682		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000556285	ENST00000556285		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000556285	ENST00000556674		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-3UTR	ENST00000556674	ENST00000238682		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000556674	ENST00000556285		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000556674	ENST00000556674		ChiTaRS3.1			AA579057	TGFB3	chr14	76431964	-	TGFB3	chr14	76424783	+
intron-intron	ENST00000331457	ENST00000535622		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000400246		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000266091		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000382105		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000400249		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000382112		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000382111		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000400248		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000494060		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000536766		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000400242		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000331457	ENST00000539165		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000535622		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000400246		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000266091		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000382105		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000400249		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000382112		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000382111		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000400248		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000494060		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000536766		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000400242		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000433341	ENST00000539165		ChiTaRS3.1			BM150997	DRG1	chr22	31829856	-	DEPDC5	chr22	32272251	-
intron-intron	ENST00000435819	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000435819	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000435819	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000435819	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000309881	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000309881	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000309881	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000309881	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000534394	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000534394	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000534394	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000534394	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000441109	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000441109	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000441109	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000441109	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000394788	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000394788	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000394788	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000394788	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000447544	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000447544	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000447544	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000447544	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000432207	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000432207	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000432207	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000432207	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000544133	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000544133	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000544133	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000544133	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000538969	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000538969	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000538969	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000538969	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000433696	ENST00000301807		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000433696	ENST00000429976		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000433696	ENST00000428977		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000433696	ENST00000463984		ChiTaRS3.1			BF359477	CD36	chr7	80224112	+	TRANK1	chr3	36870235	-
intron-intron	ENST00000476233	ENST00000396373		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000476233	ENST00000544715		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000354667	ENST00000396373		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000354667	ENST00000544715		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000356674	ENST00000396373		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000356674	ENST00000544715		ChiTaRS3.1			BU940187	HNRNPA2B1	chr7	26235474	-	ETV6	chr12	12264271	+
intron-intron	ENST00000456518	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000456518	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000397174	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000397174	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000402904	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000402904	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000361191	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000361191	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000397171	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000397171	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000361705	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000361705	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000326197	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000326197	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372595	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372595	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000337495	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000337495	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372596	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372596	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372597	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000372597	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000472037	ENST00000301037		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
intron-intron	ENST00000472037	ENST00000469832		ChiTaRS3.1			BF986207	SCMH1	chr1	41696552	-	SGK494	chr17	26935966	+
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000426496	ENST00000476522		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000426496	ENST00000367742		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000426496	ENST00000338920		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000392078	ENST00000476522		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000392078	ENST00000367742		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000392078	ENST00000338920		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-3UTR	ENST00000476522	ENST00000476522		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-3UTR	ENST00000476522	ENST00000367742		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-3UTR	ENST00000476522	ENST00000338920		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000367742	ENST00000476522		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000367742	ENST00000367742		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000367742	ENST00000338920		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000338920	ENST00000476522		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000338920	ENST00000367742		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
5CDS-3UTR	ENST00000338920	ENST00000338920		ChiTaRS3.1			CR983037	PRRC2C	chr1	171502100	+	PRRC2C	chr1	171492358	+
intron-intron	ENST00000348657	ENST00000381340		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000348657	ENST00000545902		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000348657	ENST00000242737		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000252115	ENST00000381340		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000252115	ENST00000545902		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000252115	ENST00000242737		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000339677	ENST00000381340		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000339677	ENST00000545902		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000339677	ENST00000242737		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000451060	ENST00000381340		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000451060	ENST00000545902		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000451060	ENST00000242737		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000491021	ENST00000381340		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000491021	ENST00000545902		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-intron	ENST00000491021	ENST00000242737		ChiTaRS3.1			BI027067	POLDIP3	chr22	42980893	-	ITPR2	chr12	26633482	-
intron-3CDS	ENST00000332512	ENST00000409198		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000332512	ENST00000397345		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000332512	ENST00000427231		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000332512	ENST00000172853		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000332512	ENST00000604864		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000332512	ENST00000603639		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000332512	ENST00000397336		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000332512	ENST00000509223		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000332512	ENST00000498015		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000409198		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000397345		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000427231		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000172853		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000604864		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000352483	ENST00000603639		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000352483	ENST00000397336		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000352483	ENST00000509223		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000352483	ENST00000498015		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000409198		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000397345		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000427231		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000172853		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000604864		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000542057	ENST00000603639		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000542057	ENST00000397336		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000542057	ENST00000509223		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000542057	ENST00000498015		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000409198		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000397345		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000427231		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000172853		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000604864		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-3CDS	ENST00000544709	ENST00000603639		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000544709	ENST00000397336		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000544709	ENST00000509223		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000544709	ENST00000498015		ChiTaRS3.1			BE717807	RIPK4	chr21	43166181	+	NEB	chr2	152468732	+
intron-intron	ENST00000366943	ENST00000258484		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-intron	ENST00000366943	ENST00000409654		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-intron	ENST00000307340	ENST00000258484		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-intron	ENST00000307340	ENST00000409654		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-intron	ENST00000366942	ENST00000258484		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-intron	ENST00000366942	ENST00000409654		ChiTaRS3.1			BE829017	USH2A	chr1	216582511	-	EPC2	chr2	149519494	-
intron-3UTR	ENST00000448637	ENST00000311351		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000448637	ENST00000520755		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-5UTR	ENST00000448637	ENST00000522515		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000312675	ENST00000311351		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000312675	ENST00000520755		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-5UTR	ENST00000312675	ENST00000522515		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000543006	ENST00000311351		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000543006	ENST00000520755		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-5UTR	ENST00000543006	ENST00000522515		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000471917	ENST00000311351		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3UTR	ENST00000471917	ENST00000520755		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-5UTR	ENST00000471917	ENST00000522515		ChiTaRS3.1			AA501557	LPP	chr3	188138333	-	LSM1	chr8	38020935	+
intron-3CDS	ENST00000380516	ENST00000380516		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3CDS	ENST00000380516	ENST00000536328		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-intron	ENST00000380516	ENST00000557950		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3CDS	ENST00000536328	ENST00000380516		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3CDS	ENST00000536328	ENST00000536328		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-intron	ENST00000536328	ENST00000557950		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3CDS	ENST00000557950	ENST00000380516		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3CDS	ENST00000557950	ENST00000536328		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-intron	ENST00000557950	ENST00000557950		ChiTaRS3.1			AW996827	SLTM	chr15	59186379	+	SLTM	chr15	59185176	+
intron-3UTR	ENST00000404360	ENST00000404360		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000404360	ENST00000405858		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000404360	ENST00000342651		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000404360	ENST00000491565		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000405858	ENST00000404360		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000405858	ENST00000405858		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000405858	ENST00000342651		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000405858	ENST00000491565		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000342651	ENST00000404360		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000342651	ENST00000405858		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000342651	ENST00000342651		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000342651	ENST00000491565		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000491565	ENST00000404360		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-3UTR	ENST00000491565	ENST00000405858		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000491565	ENST00000342651		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
intron-intron	ENST00000491565	ENST00000491565		ChiTaRS3.1			BM543917	ZNF12	chr7	6728398	+	ZNF12	chr7	6728376	-
5CDS-intron	ENST00000217159	ENST00000217159		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
5CDS-intron	ENST00000217159	ENST00000370507		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
5CDS-intron	ENST00000217159	ENST00000470412		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
5CDS-intron	ENST00000370507	ENST00000217159		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
5CDS-intron	ENST00000370507	ENST00000370507		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
5CDS-intron	ENST00000370507	ENST00000470412		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
intron-intron	ENST00000470412	ENST00000217159		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
intron-intron	ENST00000470412	ENST00000370507		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
intron-intron	ENST00000470412	ENST00000470412		ChiTaRS3.1			BF800567	SLCO4A1	chr20	61296384	+	SLCO4A1	chr20	61294589	-
3UTR-3UTR	ENST00000269260	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000269260	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000269260	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000269260	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000269260	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000269260	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000269260	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000269260	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000269260	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000574954	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000574954	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000574954	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000574954	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000570718	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000570718	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000570718	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000570718	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000346341	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000346341	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000346341	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000346341	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000572457	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000572457	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000572457	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000572457	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000381488	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000381488	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000381488	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000381488	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000412477	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000412477	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000412477	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000412477	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000575877	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000575877	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-intron	ENST00000575877	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
3UTR-3UTR	ENST00000575877	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000269260		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000571206	ENST00000574954		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000571206	ENST00000570718		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000346341		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000572457		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-intron	ENST00000571206	ENST00000381488		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000412477		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000575877		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
intron-3UTR	ENST00000571206	ENST00000571206		ChiTaRS3.1			AI469107	ARRB2	chr17	4624461	-	ARRB2	chr17	4624410	+
5CDS-intron	ENST00000299698	ENST00000566228		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
5CDS-intron	ENST00000299698	ENST00000323433		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
5CDS-intron	ENST00000299698	ENST00000306030		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
5CDS-intron	ENST00000299698	ENST00000568359		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000539547	ENST00000566228		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000539547	ENST00000323433		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000539547	ENST00000306030		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000539547	ENST00000568359		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000540049	ENST00000566228		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000540049	ENST00000323433		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000540049	ENST00000306030		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000540049	ENST00000568359		ChiTaRS3.1			BF832717	A2ML1	chr12	8995787	+	SNX29	chr16	12119888	+
intron-intron	ENST00000444376	ENST00000383018		ChiTaRS3.1			AF289607	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000444376	ENST00000493672		ChiTaRS3.1			AF289607	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000283179	ENST00000383018		ChiTaRS3.1			AF289607	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-intron	ENST00000283179	ENST00000493672		ChiTaRS3.1			AF289607	HNRNPU	chr1	245014421	-	SNRNP25	chr16	104960	+
intron-3UTR	ENST00000381346	ENST00000379719		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
intron-intron	ENST00000381346	ENST00000533680		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
intron-3UTR	ENST00000553384	ENST00000379719		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
intron-intron	ENST00000553384	ENST00000533680		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
intron-3UTR	ENST00000428130	ENST00000379719		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
intron-intron	ENST00000428130	ENST00000533680		ChiTaRS3.1			BC017787	RDH11	chr14	68159262	-	IPO7	chr11	9467536	+
3UTR-3UTR	ENST00000227507	ENST00000554908		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
3UTR-3UTR	ENST00000227507	ENST00000358056		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
3UTR-intron	ENST00000227507	ENST00000553566		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
intron-3UTR	ENST00000536559	ENST00000554908		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
intron-3UTR	ENST00000536559	ENST00000358056		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
intron-intron	ENST00000536559	ENST00000553566		ChiTaRS3.1			BF747957	CCND1	chr11	69467559	+	GMFB	chr14	54942147	+
intron-intron	ENST00000458591	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380338		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000355930		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000429426		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000475957		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380321		ChiTaRS3.1			BG221177	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-3CDS	ENST00000352140	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000352140	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000594404	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000594404	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000367376	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000367376	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000442510	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000442510	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000348564	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000348564	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000598951	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000598951	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000367364	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000367364	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000413409	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000413409	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000391970	ENST00000423345		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-3CDS	ENST00000391970	ENST00000255612		ChiTaRS3.1			BI023737	PTPRC	chr1	198672523	+	PRAM1	chr19	8556033	-
intron-intron	ENST00000510514	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000510514	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000510514	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000555236	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000555236	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000555236	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000434623	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000434623	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000434623	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000374525	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000374525	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000374525	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000259318	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000259318	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000259318	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000482335	ENST00000287218		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000482335	ENST00000373391		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-intron	ENST00000482335	ENST00000463847		ChiTaRS3.1			AW880287	AKAP2	chr9	112870227	+	ZFAND3	chr6	37934050	-
intron-3UTR	ENST00000254810	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000254810	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000254810	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000593254	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000593254	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000593254	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000592643	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000592643	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000592643	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000591890	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000591890	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000591890	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000587560	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000587560	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000587560	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000589599	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000589599	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000589599	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000586607	ENST00000359878		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-3UTR	ENST00000586607	ENST00000409157		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
intron-intron	ENST00000586607	ENST00000468413		ChiTaRS3.1			BE771697	H3F3B	chr17	73774597	+	KCTD18	chr2	201354607	+
In-frame	ENST00000421109	ENST00000330263		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
5CDS-3UTR	ENST00000421109	ENST00000493700		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
Frame-shit	ENST00000394166	ENST00000330263		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
5CDS-3UTR	ENST00000394166	ENST00000493700		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
Frame-shit	ENST00000394171	ENST00000330263		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
5CDS-3UTR	ENST00000394171	ENST00000493700		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
Frame-shit	ENST00000453270	ENST00000330263		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
5CDS-3UTR	ENST00000453270	ENST00000493700		ChiTaRS3.1			AI214117	NR2F2	chr15	96880782	-	MRTO4	chr1	19578335	+
intron-intron	ENST00000372037	ENST00000372037		ChiTaRS3.1			DW410047	BMPR1A	chr10	88652929	+	BMPR1A	chr10	88652120	+
intron-intron	ENST00000372037	ENST00000480152		ChiTaRS3.1			DW410047	BMPR1A	chr10	88652929	+	BMPR1A	chr10	88652120	+
intron-intron	ENST00000480152	ENST00000372037		ChiTaRS3.1			DW410047	BMPR1A	chr10	88652929	+	BMPR1A	chr10	88652120	+
intron-intron	ENST00000480152	ENST00000480152		ChiTaRS3.1			DW410047	BMPR1A	chr10	88652929	+	BMPR1A	chr10	88652120	+
intron-intron	ENST00000555220	ENST00000317876		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555220	ENST00000383180		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555220	ENST00000536478		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555220	ENST00000341790		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555220	ENST00000484930		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555220	ENST00000333911		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000317876		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000383180		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000536478		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000341790		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000484930		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000555424	ENST00000333911		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000317876		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000383180		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000536478		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000341790		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000484930		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000608382	ENST00000333911		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000317876		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000383180		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000536478		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000341790		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000484930		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-intron	ENST00000394715	ENST00000333911		ChiTaRS3.1			AA452527	ZBTB25	chr14	64945096	-	NME9	chr3	138016452	+
intron-3CDS	ENST00000271348	ENST00000271348		ChiTaRS3.1			BQ369227	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000271348	ENST00000369237		ChiTaRS3.1			BQ369227	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000369237	ENST00000271348		ChiTaRS3.1			BQ369227	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000369237	ENST00000369237		ChiTaRS3.1			BQ369227	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
Frame-shit	ENST00000278742	ENST00000278742		ChiTaRS3.1			AW965057	ST14	chr11	130066533	+	ST14	chr11	130064080	+
intron-3CDS	ENST00000419304	ENST00000262982		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000419304	ENST00000542325		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000419304	ENST00000396192		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-intron	ENST00000419304	ENST00000469700		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000419572	ENST00000262982		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000419572	ENST00000542325		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000419572	ENST00000396192		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-intron	ENST00000419572	ENST00000469700		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000401412	ENST00000262982		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000401412	ENST00000542325		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000401412	ENST00000396192		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-intron	ENST00000401412	ENST00000469700		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000486219	ENST00000262982		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000486219	ENST00000542325		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-3CDS	ENST00000486219	ENST00000396192		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-intron	ENST00000486219	ENST00000469700		ChiTaRS3.1			AA306967	AGR2	chr7	16832375	+	CSE1L	chr20	47704579	+
intron-intron	ENST00000288602	ENST00000301037		ChiTaRS3.1			AI360267	BRAF	chr7	140419394	+	SGK494	chr17	26937144	+
intron-intron	ENST00000288602	ENST00000469832		ChiTaRS3.1			AI360267	BRAF	chr7	140419394	+	SGK494	chr17	26937144	+
intron-5UTR	ENST00000394936	ENST00000488299		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-5UTR	ENST00000394936	ENST00000380843		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-5UTR	ENST00000394936	ENST00000380851		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-5UTR	ENST00000394934	ENST00000488299		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-5UTR	ENST00000394934	ENST00000380843		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-5UTR	ENST00000394934	ENST00000380851		ChiTaRS3.1			BI015407	PSAP	chr10	73581743	+	IDH3B	chr20	2640724	+
intron-intron	ENST00000439123	ENST00000374242		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000439123	ENST00000374238		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000439123	ENST00000497712		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000439123	ENST00000374236		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000439123	ENST00000374234		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000508776	ENST00000374242		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000508776	ENST00000374238		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000508776	ENST00000497712		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000508776	ENST00000374236		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000508776	ENST00000374234		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000296464	ENST00000374242		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000296464	ENST00000374238		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000296464	ENST00000497712		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000296464	ENST00000374236		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000296464	ENST00000374234		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000505726	ENST00000374242		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000505726	ENST00000374238		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000505726	ENST00000497712		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000505726	ENST00000374236		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000505726	ENST00000374234		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000515262	ENST00000374242		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000515262	ENST00000374238		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000515262	ENST00000497712		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000515262	ENST00000374236		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
intron-intron	ENST00000515262	ENST00000374234		ChiTaRS3.1			BC013097	HSPA4L	chr4	128730752	+	INIP	chr9	115454569	+
Frame-shit	ENST00000323848	ENST00000323848		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000323848	ENST00000447431		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000323848	ENST00000374389		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-3UTR	ENST00000323848	ENST00000479034		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-intron	ENST00000323848	ENST00000537199		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000447431	ENST00000323848		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000447431	ENST00000447431		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000447431	ENST00000374389		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-3UTR	ENST00000447431	ENST00000479034		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-intron	ENST00000447431	ENST00000537199		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000374389	ENST00000323848		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000374389	ENST00000447431		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
Frame-shit	ENST00000374389	ENST00000374389		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-3UTR	ENST00000374389	ENST00000479034		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
5CDS-intron	ENST00000374389	ENST00000537199		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
3UTR-3CDS	ENST00000479034	ENST00000323848		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
3UTR-3CDS	ENST00000479034	ENST00000447431		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
3UTR-3CDS	ENST00000479034	ENST00000374389		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
3UTR-3UTR	ENST00000479034	ENST00000479034		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
3UTR-intron	ENST00000479034	ENST00000537199		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-3CDS	ENST00000537199	ENST00000323848		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-3CDS	ENST00000537199	ENST00000447431		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-3CDS	ENST00000537199	ENST00000374389		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-3UTR	ENST00000537199	ENST00000479034		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-intron	ENST00000537199	ENST00000537199		ChiTaRS3.1			BM678067	SRRM1	chr1	24973215	-	SRRM1	chr1	24995935	-
intron-intron	ENST00000377795	ENST00000403766		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000377795	ENST00000376440		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000377795	ENST00000460562		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000353334	ENST00000403766		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000353334	ENST00000376440		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000353334	ENST00000460562		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000524315	ENST00000403766		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000524315	ENST00000376440		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000524315	ENST00000460562		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000009530	ENST00000403766		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000009530	ENST00000376440		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
intron-intron	ENST00000009530	ENST00000460562		ChiTaRS3.1			AI240457	CD74	chr5	149781386	+	UBAC2	chr13	99861646	-
In-frame	ENST00000248444	ENST00000248444		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000248444	ENST00000392114		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000248444	ENST00000440053		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000248444		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000392114		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000392114	ENST00000440053		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000248444		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000392114		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-intron	ENST00000440053	ENST00000440053		ChiTaRS3.1			BE513047	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-intron	ENST00000356205	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000356205	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368623	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000368621	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000310483	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000537590	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000545260		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000545693		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000350537		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000346874		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374789		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374790		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374794		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374788		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000466092		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374776		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000340077		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000544292		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374773		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
intron-intron	ENST00000461071	ENST00000374768		ChiTaRS3.1			BF945977	SLC39A1	chr1	153932493	+	PARD3	chr10	34752143	-
5CDS-intron	ENST00000332050	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000425759		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000292733		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000542773		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000263205		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000406969		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000382974		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000541476		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000478831		ChiTaRS3.1			BG003287	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-3UTR	ENST00000258214	ENST00000258214		ChiTaRS3.1			R58437	CCDC102A	chr16	57546621	+	CCDC102A	chr16	57546520	-
3UTR-3CDS	ENST00000358161	ENST00000318080		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000358161	ENST00000464290		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000358161	ENST00000393384		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-3CDS	ENST00000372739	ENST00000318080		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000372739	ENST00000464290		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000372739	ENST00000393384		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-3CDS	ENST00000372731	ENST00000318080		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000372731	ENST00000464290		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
3UTR-intron	ENST00000372731	ENST00000393384		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
intron-3CDS	ENST00000475367	ENST00000318080		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
intron-intron	ENST00000475367	ENST00000464290		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
intron-intron	ENST00000475367	ENST00000393384		ChiTaRS3.1			AW843407	SPTAN1	chr9	131395632	-	CRAT	chr9	131860855	+
intron-5UTR	ENST00000358602	ENST00000471694		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000358602	ENST00000355354		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000358602	ENST00000361309		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-5UTR	ENST00000509867	ENST00000471694		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000509867	ENST00000355354		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000509867	ENST00000361309		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-5UTR	ENST00000330838	ENST00000471694		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000330838	ENST00000355354		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000330838	ENST00000361309		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-5UTR	ENST00000514252	ENST00000471694		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000514252	ENST00000355354		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
intron-intron	ENST00000514252	ENST00000361309		ChiTaRS3.1			AW857537	ANKRD17	chr4	74110165	-	CD47	chr3	107773079	-
3UTR-3UTR	ENST00000407597	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000407597	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000407597	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000407597	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000407597	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000407597	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000424279	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000424279	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000424279	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000424279	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000424279	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000424279	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000536365	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000536365	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000536365	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000536365	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000536365	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000536365	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000380961	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000380961	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000380961	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000380961	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000380961	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000380961	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000217964	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000217964	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000217964	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000217964	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-3UTR	ENST00000217964	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
3UTR-intron	ENST00000217964	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000497555	ENST00000407597		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000497555	ENST00000424279		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000497555	ENST00000536365		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000497555	ENST00000380961		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-3UTR	ENST00000497555	ENST00000217964		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000497555	ENST00000497555		ChiTaRS3.1			BQ774627	TBL1X	chrX	9687699	-	TBL1X	chrX	9686972	+
intron-intron	ENST00000575898	ENST00000376177		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000396172		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000417556		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000458640		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000462421		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000415382		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000453105		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000449074		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000552820		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000463430		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000438578		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000415689		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000456476		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000412106		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000547039		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000550435		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000453488		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000453138		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000552288		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000441425		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000456666		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000546633		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000483957		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000430703		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000416863		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000413678		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000414440		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000547489		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000551031		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000468089		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000400293		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000400296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000400295		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000383508		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000548340		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000548331		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000495391		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000446341		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000548614		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000448296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000412330		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000445218		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000546637		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000489325		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000450987		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575898	ENST00000431360		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575898	ENST00000430784		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575898	ENST00000550217		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575898	ENST00000470514		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575898	ENST00000549374		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000376177		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000396172		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000417556		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000458640		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000462421		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000415382		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000453105		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000449074		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000552820		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000463430		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000438578		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000415689		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000456476		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000412106		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000547039		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000550435		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000453488		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000453138		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000552288		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000441425		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000456666		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000546633		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000483957		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000430703		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000416863		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000413678		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000414440		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000547489		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000551031		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000468089		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000400293		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000400296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000400295		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000383508		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000548340		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000548331		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000495391		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000446341		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000548614		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000448296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000412330		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000445218		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000546637		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000489325		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000450987		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000250076	ENST00000431360		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000250076	ENST00000430784		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000250076	ENST00000550217		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000250076	ENST00000470514		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000250076	ENST00000549374		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000376177		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000396172		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000417556		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000458640		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000462421		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000415382		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000453105		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000449074		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000552820		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000463430		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000438578		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000415689		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000456476		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000412106		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000547039		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000550435		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000453488		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000453138		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000552288		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000441425		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000456666		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000546633		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000483957		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000430703		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000416863		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000413678		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000414440		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000547489		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000551031		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000468089		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000400293		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000400296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000400295		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000383508		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000548340		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000548331		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000495391		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000446341		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000548614		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000448296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000412330		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000445218		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000546637		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000489325		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000450987		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000416429	ENST00000431360		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000416429	ENST00000430784		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000416429	ENST00000550217		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000416429	ENST00000470514		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000416429	ENST00000549374		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000376177		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000396172		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000417556		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000458640		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000462421		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000415382		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000453105		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000449074		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000552820		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000463430		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000438578		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000415689		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000456476		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000412106		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000547039		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000550435		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000453488		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000453138		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000552288		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000441425		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000456666		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000546633		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000483957		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000430703		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000416863		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000413678		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000414440		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000547489		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000551031		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000468089		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000400293		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000400296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000400295		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000383508		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000548340		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000548331		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000495391		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000446341		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000548614		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000448296		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000412330		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000445218		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000546637		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000489325		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000450987		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575538	ENST00000431360		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575538	ENST00000430784		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575538	ENST00000550217		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-intron	ENST00000575538	ENST00000470514		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-5UTR	ENST00000575538	ENST00000549374		ChiTaRS3.1			AW393517	ZNF232	chr17	5009308	+	DDX39B	chr6	2840581	-
intron-3UTR	ENST00000380249	ENST00000534336		ChiTaRS3.1			AW367687	FOCAD	chr9	20880483	-	MALAT1	chr11	65267688	+
intron-3UTR	ENST00000338382	ENST00000534336		ChiTaRS3.1			AW367687	FOCAD	chr9	20880483	-	MALAT1	chr11	65267688	+
intron-3UTR	ENST00000605086	ENST00000534336		ChiTaRS3.1			AW367687	FOCAD	chr9	20880483	-	MALAT1	chr11	65267688	+
intron-3UTR	ENST00000604828	ENST00000534336		ChiTaRS3.1			AW367687	FOCAD	chr9	20880483	-	MALAT1	chr11	65267688	+
intron-intron	ENST00000336755	ENST00000607334		ChiTaRS3.1			AI909067	ZCCHC7	chr9	37221620	-	DLEU2	chr13	50652352	+
intron-intron	ENST00000534928	ENST00000607334		ChiTaRS3.1			AI909067	ZCCHC7	chr9	37221620	-	DLEU2	chr13	50652352	+
intron-intron	ENST00000461038	ENST00000607334		ChiTaRS3.1			AI909067	ZCCHC7	chr9	37221620	-	DLEU2	chr13	50652352	+
intron-intron	ENST00000322831	ENST00000607334		ChiTaRS3.1			AI909067	ZCCHC7	chr9	37221620	-	DLEU2	chr13	50652352	+
intron-intron	ENST00000489399	ENST00000398519		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000489399	ENST00000314028		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000489399	ENST00000392334		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000489399	ENST00000578904		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000309988	ENST00000398519		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000309988	ENST00000314028		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000309988	ENST00000392334		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000309988	ENST00000578904		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000349807	ENST00000398519		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000349807	ENST00000314028		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000349807	ENST00000392334		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000349807	ENST00000578904		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000354078	ENST00000398519		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000354078	ENST00000314028		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000354078	ENST00000392334		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000354078	ENST00000578904		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000353004	ENST00000398519		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000353004	ENST00000314028		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000353004	ENST00000392334		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-intron	ENST00000353004	ENST00000578904		ChiTaRS3.1			BF751667	MAL	chr2	95705376	-	CSNK1D	chr17	80218566	-
intron-3CDS	ENST00000346128	ENST00000397967		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000346128	ENST00000340900		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000346128	ENST00000412779		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000346128	ENST00000555698		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000346128	ENST00000397970		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000400011	ENST00000397967		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000400011	ENST00000340900		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000400011	ENST00000412779		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000400011	ENST00000555698		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000400011	ENST00000397970		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000356107	ENST00000397967		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000356107	ENST00000340900		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000356107	ENST00000412779		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000356107	ENST00000555698		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000356107	ENST00000397970		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000545208	ENST00000397967		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000545208	ENST00000340900		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000545208	ENST00000412779		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000545208	ENST00000555698		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000545208	ENST00000397970		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000495972	ENST00000397967		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000495972	ENST00000340900		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000495972	ENST00000412779		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000495972	ENST00000555698		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-3CDS	ENST00000495972	ENST00000397970		ChiTaRS3.1			BF847087	TJP1	chr15	30018605	+	RNASE1	chr14	21270057	+
intron-intron	ENST00000359120	ENST00000454300		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
intron-intron	ENST00000359120	ENST00000263635		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
3UTR-intron	ENST00000511217	ENST00000454300		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
3UTR-intron	ENST00000511217	ENST00000263635		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
intron-intron	ENST00000511705	ENST00000454300		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
intron-intron	ENST00000511705	ENST00000263635		ChiTaRS3.1			AW449407	SH3RF2	chr5	145461035	-	TANC1	chr2	159904831	-
intron-intron	ENST00000344691	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000344691	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000344691	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000344691	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000344691	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000325074	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000325074	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000325074	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000325074	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000325074	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000437180	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000437180	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000437180	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000437180	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000437180	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000300305	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000300305	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000300305	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000300305	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000300305	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000399240	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000399240	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000399240	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000399240	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000399240	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000486278	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000486278	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000486278	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000486278	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000486278	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000494829	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000494829	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000494829	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000494829	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000494829	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000358356	ENST00000304076		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000358356	ENST00000602142		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000358356	ENST00000596764		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000358356	ENST00000539284		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000358356	ENST00000599806		ChiTaRS3.1			DA945077	RUNX1	chr21	36339250	-	VAV1	chr19	6772717	+
intron-intron	ENST00000421182	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000421182	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000421182	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000421182	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000421182	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000421182	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357867	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000323926	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000336916	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000354785	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000357009	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000346544	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000345488	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000359671	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000446046	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000443816	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000432072	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000356005	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000490833	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000297056		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000425398		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000436575		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000428902		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000421761		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000426059	ENST00000479922		ChiTaRS3.1			BI050907	FN1	chr2	216240386	-	DAGLB	chr7	6502734	+
intron-intron	ENST00000216373	ENST00000410080		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000216373	ENST00000486100		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000543680	ENST00000410080		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000543680	ENST00000486100		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000555794	ENST00000410080		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000555794	ENST00000486100		ChiTaRS3.1			BE706447	SOS2	chr14	50655545	+	PRPF40A	chr2	153569639	-
intron-intron	ENST00000310546	ENST00000310546		ChiTaRS3.1			AA247137	SPSB4	chr3	140799710	+	SPSB4	chr3	140797241	+
intron-intron	ENST00000310546	ENST00000507895		ChiTaRS3.1			AA247137	SPSB4	chr3	140799710	+	SPSB4	chr3	140797241	+
intron-intron	ENST00000507895	ENST00000310546		ChiTaRS3.1			AA247137	SPSB4	chr3	140799710	+	SPSB4	chr3	140797241	+
intron-intron	ENST00000507895	ENST00000507895		ChiTaRS3.1			AA247137	SPSB4	chr3	140799710	+	SPSB4	chr3	140797241	+
intron-3CDS	ENST00000375759	ENST00000375759		ChiTaRS3.1			BE164907	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000375759	ENST00000471538		ChiTaRS3.1			BE164907	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-3CDS	ENST00000471538	ENST00000375759		ChiTaRS3.1			BE164907	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000471538	ENST00000471538		ChiTaRS3.1			BE164907	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000461188	ENST00000421182		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000357867		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000323926		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000336916		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000354785		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000357009		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000346544		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000345488		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000359671		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000446046		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000443816		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000432072		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000356005		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000490833		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000461188	ENST00000426059		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000421182		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000357867		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000323926		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000336916		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000354785		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000357009		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000346544		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000345488		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000359671		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000446046		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000443816		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000432072		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000356005		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000490833		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
intron-intron	ENST00000354200	ENST00000426059		ChiTaRS3.1			BQ008587	TBC1D20	chr20	417499	+	FN1	chr2	216230830	+
3UTR-intron	ENST00000380527	ENST00000253063		ChiTaRS3.1			AW300167	RRAGA	chr9	19050780	-	SESN2	chr1	28594630	-
intron-intron	ENST00000342247	ENST00000336755		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000342247	ENST00000534928		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000342247	ENST00000461038		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000342247	ENST00000322831		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400585	ENST00000336755		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400585	ENST00000534928		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400585	ENST00000461038		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400585	ENST00000322831		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000497534	ENST00000336755		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000497534	ENST00000534928		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000497534	ENST00000461038		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000497534	ENST00000322831		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400573	ENST00000336755		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400573	ENST00000534928		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400573	ENST00000461038		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000400573	ENST00000322831		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000262608	ENST00000336755		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000262608	ENST00000534928		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000262608	ENST00000461038		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-intron	ENST00000262608	ENST00000322831		ChiTaRS3.1			BI058947	CECR2	chr22	17939531	-	ZCCHC7	chr9	37270384	-
intron-3UTR	ENST00000378609	ENST00000227507		ChiTaRS3.1			DB357327	GNB1	chr1	1716854	+	CCND1	chr11	69467796	-
intron-intron	ENST00000378609	ENST00000536559		ChiTaRS3.1			DB357327	GNB1	chr1	1716854	+	CCND1	chr11	69467796	-
intron-3UTR	ENST00000472614	ENST00000227507		ChiTaRS3.1			DB357327	GNB1	chr1	1716854	+	CCND1	chr11	69467796	-
intron-intron	ENST00000472614	ENST00000536559		ChiTaRS3.1			DB357327	GNB1	chr1	1716854	+	CCND1	chr11	69467796	-
intron-intron	ENST00000555545	ENST00000555545		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000555545	ENST00000261245		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000555545	ENST00000539616		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000261245	ENST00000555545		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000261245	ENST00000261245		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000261245	ENST00000539616		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000539616	ENST00000555545		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000539616	ENST00000261245		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000539616	ENST00000539616		ChiTaRS3.1			BY798327	MNAT1	chr14	61228452	-	MNAT1	chr14	61228502	+
intron-intron	ENST00000278193	ENST00000578921		ChiTaRS3.1			BU751867	LIN7C	chr11	27516749	+	RAB31	chr18	9741098	-
intron-intron	ENST00000278193	ENST00000577284		ChiTaRS3.1			BU751867	LIN7C	chr11	27516749	+	RAB31	chr18	9741098	-
intron-intron	ENST00000524596	ENST00000578921		ChiTaRS3.1			BU751867	LIN7C	chr11	27516749	+	RAB31	chr18	9741098	-
intron-intron	ENST00000524596	ENST00000577284		ChiTaRS3.1			BU751867	LIN7C	chr11	27516749	+	RAB31	chr18	9741098	-
intron-intron	ENST00000326195	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000376545	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000396515	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457111	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000452530	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000416932	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000470464	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000419893	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000448939	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457970	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000475528	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457078	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000412443	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000546690	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000421608	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000486105	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000383588	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000383587	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000400609	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000485585	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000426219	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000421042	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000552867	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000454094	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000494413	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
5CDS-intron	ENST00000423247	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
5CDS-intron	ENST00000420257	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000456791	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
3UTR-intron	ENST00000495194	ENST00000555688		ChiTaRS3.1			CV374087	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000336617	ENST00000369472		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000336617	ENST00000336032		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000336617	ENST00000354922		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000422660	ENST00000369472		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000422660	ENST00000336032		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000422660	ENST00000354922		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000495244	ENST00000369472		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000495244	ENST00000336032		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-intron	ENST00000495244	ENST00000354922		ChiTaRS3.1			BQ638167	RNASEH2B	chr13	51486351	+	PNRC1	chr6	89790706	+
intron-3CDS	ENST00000321765	ENST00000321765		ChiTaRS3.1			BE092077	SPAG5	chr17	26925615	+	SPAG5	chr17	26920088	-
In-frame	ENST00000290913	ENST00000290913		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
In-frame	ENST00000290913	ENST00000508789		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
5CDS-intron	ENST00000290913	ENST00000515867		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
In-frame	ENST00000508789	ENST00000290913		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
In-frame	ENST00000508789	ENST00000508789		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
5CDS-intron	ENST00000508789	ENST00000515867		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
intron-3CDS	ENST00000515867	ENST00000290913		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
intron-3CDS	ENST00000515867	ENST00000508789		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
intron-intron	ENST00000515867	ENST00000515867		ChiTaRS3.1			BG118827	CHCHD6	chr3	126446010	-	CHCHD6	chr3	126449447	+
intron-intron	ENST00000455662	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000455662	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000455662	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000455662	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000455662	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000455662	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000418807	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443872	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000443938	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000244204	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000455662		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000418807		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000443872		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000443938		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000244204		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-intron	ENST00000428360	ENST00000428360		ChiTaRS3.1			AW748767	NAGK	chr2	71300374	+	NAGK	chr2	71300326	-
intron-3CDS	ENST00000351747	ENST00000327671		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000351747	ENST00000518672		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000351747	ENST00000524021		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000351747	ENST00000335589		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000351747	ENST00000518076		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000327671		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000518672		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000524021		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000462713	ENST00000335589		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000462713	ENST00000518076		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000327671		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000518672		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000524021		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000344804	ENST00000335589		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000344804	ENST00000518076		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000327671		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000518672		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000524021		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000389536	ENST00000335589		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000389536	ENST00000518076		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000327671		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000518672		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000524021		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000311202	ENST00000335589		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000311202	ENST00000518076		ChiTaRS3.1			AW511397	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000588262	ENST00000322313		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000588262	ENST00000393006		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-3UTR	ENST00000588262	ENST00000409658		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000252530	ENST00000322313		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000252530	ENST00000393006		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-3UTR	ENST00000252530	ENST00000409658		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000343358	ENST00000322313		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000343358	ENST00000393006		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-3UTR	ENST00000343358	ENST00000409658		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000585954	ENST00000322313		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000585954	ENST00000393006		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-3UTR	ENST00000585954	ENST00000409658		ChiTaRS3.1			AI655327	FAM98C	chr19	38899778	+	WDR33	chr2	128520491	+
intron-intron	ENST00000534968	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000376656		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000540416		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396551		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396548		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000376659		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396547		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549051		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552805		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549841		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550432		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000458607		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550581		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000446397		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000431272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000424575		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549269		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546886		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547030		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546867		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000440117		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552950		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000449318		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000414015		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000413715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552165		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547272		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548002		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548680		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000438076		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000551862		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000430502		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000433900		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000451715		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550625		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550282		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549959		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547598		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000400644		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550618		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383601		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383603		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383602		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548540		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552047		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547462		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552337		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000438859		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552136		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000451132		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000450778		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000445206		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546617		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000550063		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000552594		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000552520		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000452705		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552257		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000443109		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000419790		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000426469		ChiTaRS3.1			AI651527	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000369536	ENST00000369536		ChiTaRS3.1			AA532887	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-intron	ENST00000369536	ENST00000497828		ChiTaRS3.1			AA532887	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-3UTR	ENST00000497828	ENST00000369536		ChiTaRS3.1			AA532887	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-intron	ENST00000497828	ENST00000497828		ChiTaRS3.1			AA532887	RARS2	chr6	88224131	-	RARS2	chr6	88224110	+
intron-3CDS	ENST00000321765	ENST00000321765		ChiTaRS3.1			BE091907	SPAG5	chr17	26920088	+	SPAG5	chr17	26925615	-
intron-intron	ENST00000274364	ENST00000560305		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000561011		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000559911		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000558113		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000274364	ENST00000358005		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000274364	ENST00000416810		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000558750		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000558871		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000274364	ENST00000560109		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000560305		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000561011		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000559911		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000558113		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000379730	ENST00000358005		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000379730	ENST00000416810		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000558750		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000558871		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000379730	ENST00000560109		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000560305		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000561011		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000559911		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000558113		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000396234	ENST00000358005		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000396234	ENST00000416810		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000558750		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000558871		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000396234	ENST00000560109		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000560305		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000561011		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000559911		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000558113		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000502745	ENST00000358005		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000502745	ENST00000416810		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000558750		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000558871		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000502745	ENST00000560109		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000560305		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000561011		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000559911		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000558113		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000508410	ENST00000358005		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-3UTR	ENST00000508410	ENST00000416810		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000558750		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000558871		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000508410	ENST00000560109		ChiTaRS3.1			BP431967	IQGAP2	chr5	75974037	+	C15orf57	chr15	40846007	-
intron-intron	ENST00000371142	ENST00000454177		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000371142	ENST00000429705		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000371142	ENST00000296088		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000371142	ENST00000437827		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000371142	ENST00000462810		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000490192	ENST00000454177		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000490192	ENST00000429705		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000490192	ENST00000296088		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000490192	ENST00000437827		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000490192	ENST00000462810		ChiTaRS3.1			BE708017	TM9SF3	chr10	98281040	-	SNRK	chr3	43373419	-
intron-intron	ENST00000366535	ENST00000399262		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000366535	ENST00000402544		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000366535	ENST00000399251		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000366535	ENST00000542921		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000366535	ENST00000489372		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000462358	ENST00000399262		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000462358	ENST00000402544		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000462358	ENST00000399251		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000462358	ENST00000542921		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000462358	ENST00000489372		ChiTaRS3.1			DB348377	ADSS	chr1	244572621	+	JMJD1C	chr10	64976007	+
intron-intron	ENST00000218089	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000218089	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000469481	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000354548	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371160	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371157	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371145	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000218089		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000354548		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000371160		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000371157		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000371145		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000371144	ENST00000371144		ChiTaRS3.1			BE072187	STAG2	chrX	123104349	-	STAG2	chrX	123105508	+
intron-intron	ENST00000490577	ENST00000490577		ChiTaRS3.1			AW301307	DLEU1	chr13	50814508	-	DLEU1	chr13	50815040	-
intron-intron	ENST00000490577	ENST00000378180		ChiTaRS3.1			AW301307	DLEU1	chr13	50814508	-	DLEU1	chr13	50815040	-
intron-intron	ENST00000378180	ENST00000490577		ChiTaRS3.1			AW301307	DLEU1	chr13	50814508	-	DLEU1	chr13	50815040	-
intron-intron	ENST00000378180	ENST00000378180		ChiTaRS3.1			AW301307	DLEU1	chr13	50814508	-	DLEU1	chr13	50815040	-
5CDS-intron	ENST00000373202	ENST00000459775		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
5CDS-intron	ENST00000373202	ENST00000450066		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
5CDS-intron	ENST00000373202	ENST00000409025		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
5CDS-intron	ENST00000373202	ENST00000409470		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
5CDS-intron	ENST00000373202	ENST00000323701		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
5CDS-intron	ENST00000373202	ENST00000409766		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000459775		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000450066		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000409025		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000409470		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000323701		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000486993	ENST00000409766		ChiTaRS3.1			BE185347	SGPL1	chr10	72604348	+	USP39	chr2	85836033	+
intron-intron	ENST00000337288	ENST00000261772		ChiTaRS3.1			BF810167	STARD7	chr2	96851310	+	AARS	chr16	70290018	+
intron-intron	ENST00000337288	ENST00000564359		ChiTaRS3.1			BF810167	STARD7	chr2	96851310	+	AARS	chr16	70290018	+
intron-intron	ENST00000462501	ENST00000261772		ChiTaRS3.1			BF810167	STARD7	chr2	96851310	+	AARS	chr16	70290018	+
intron-intron	ENST00000462501	ENST00000564359		ChiTaRS3.1			BF810167	STARD7	chr2	96851310	+	AARS	chr16	70290018	+
intron-intron	ENST00000320672	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000320672	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000320672	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000509053	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000509053	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000509053	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000514493	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000514493	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000514493	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000510060	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000510060	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000510060	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000505980	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000505980	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000505980	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000515395	ENST00000409123		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-intron	ENST00000515395	ENST00000242140		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000515395	ENST00000409290		ChiTaRS3.1			BU741957	SSBP2	chr5	81000513	+	WIPF3	chr7	29956083	-
intron-3UTR	ENST00000376059	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376059	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376059	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376059	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000376049	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376049	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376049	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000376049	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000414149	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000414149	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000414149	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000414149	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000419376	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000419376	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000419376	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000419376	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000425748	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000425748	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000425748	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000425748	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000416422	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000416422	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000416422	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000416422	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000413349	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000413349	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000413349	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000413349	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000415830	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000415830	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000415830	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000415830	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000383474	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383474	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383474	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383474	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000488491	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000488491	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000488491	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000488491	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-3UTR	ENST00000383473	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383473	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383473	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
intron-intron	ENST00000383473	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-3UTR	ENST00000440907	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000440907	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000440907	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000440907	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-3UTR	ENST00000549432	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000549432	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000549432	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000549432	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-3UTR	ENST00000424944	ENST00000370282		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000424944	ENST00000483033		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000424944	ENST00000479918		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
5CDS-intron	ENST00000424944	ENST00000370280		ChiTaRS3.1			AW838647	AIF1	chr6	2915087	+	TMED5	chr1	93616271	-
3UTR-3CDS	ENST00000361682	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000361682	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000361682	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000361682	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000361682	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000403184	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000403184	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000403710	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000403710	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000407537	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000407537	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000406520	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000406520	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000449653	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000449653	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000316156		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000373150		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000373151		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000493893	ENST00000474796		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000493893	ENST00000373148		ChiTaRS3.1			BI053757	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3UTR	ENST00000305626	ENST00000305626		ChiTaRS3.1			AA610417	RAB33B	chr4	140397009	+	RAB33B	chr4	140397072	-
3UTR-intron	ENST00000305626	ENST00000507271		ChiTaRS3.1			AA610417	RAB33B	chr4	140397009	+	RAB33B	chr4	140397072	-
intron-3UTR	ENST00000507271	ENST00000305626		ChiTaRS3.1			AA610417	RAB33B	chr4	140397009	+	RAB33B	chr4	140397072	-
intron-intron	ENST00000507271	ENST00000507271		ChiTaRS3.1			AA610417	RAB33B	chr4	140397009	+	RAB33B	chr4	140397072	-
intron-3CDS	ENST00000361682	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000361682	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403184	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000403710	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000407537	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000406520	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000449653	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000359282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000603815		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000437231		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000447282		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000549863		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000359462		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000546463		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000552296		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000552819		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000455667		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000439930		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000548933		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
intron-3CDS	ENST00000493893	ENST00000541275		ChiTaRS3.1			AI360037	COMT	chr22	19957775	+	PCBP2	chr12	53849736	-
3UTR-3UTR	ENST00000256509	ENST00000256509		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
3UTR-3UTR	ENST00000256509	ENST00000397491		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
3UTR-intron	ENST00000256509	ENST00000489224		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
3UTR-3UTR	ENST00000397491	ENST00000256509		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
3UTR-3UTR	ENST00000397491	ENST00000397491		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
3UTR-intron	ENST00000397491	ENST00000489224		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
intron-3UTR	ENST00000489224	ENST00000256509		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
intron-3UTR	ENST00000489224	ENST00000397491		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
intron-intron	ENST00000489224	ENST00000489224		ChiTaRS3.1			BU678757	CHL1	chr3	447766	-	CHL1	chr3	447411	+
intron-intron	ENST00000398571	ENST00000398805		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000398571	ENST00000398803		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000398571	ENST00000488101		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000398571	ENST00000262542		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000398571	ENST00000539114		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000472689	ENST00000398805		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000472689	ENST00000398803		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000472689	ENST00000488101		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000472689	ENST00000262542		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000472689	ENST00000539114		ChiTaRS3.1			BE148707	USP34	chr2	61483546	+	HSDL2	chr9	115190711	-
intron-intron	ENST00000243349	ENST00000560244		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-3UTR	ENST00000243349	ENST00000261758		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-intron	ENST00000348328	ENST00000560244		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-3UTR	ENST00000348328	ENST00000261758		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-intron	ENST00000335450	ENST00000560244		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-3UTR	ENST00000335450	ENST00000261758		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-intron	ENST00000409680	ENST00000560244		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-3UTR	ENST00000409680	ENST00000261758		ChiTaRS3.1			AV731627	ACVR1C	chr2	158383504	+	MESDC2	chr15	81270833	-
intron-3UTR	ENST00000306434	ENST00000396402		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3UTR	ENST00000306434	ENST00000260433		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000306434	ENST00000396404		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000306434	ENST00000559878		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000306434	ENST00000405913		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000306434	ENST00000557858		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000306434	ENST00000492852		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3UTR	ENST00000409017	ENST00000396402		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3UTR	ENST00000409017	ENST00000260433		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000409017	ENST00000396404		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000409017	ENST00000559878		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000409017	ENST00000405913		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000409017	ENST00000557858		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000409017	ENST00000492852		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3UTR	ENST00000490878	ENST00000396402		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3UTR	ENST00000490878	ENST00000260433		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000490878	ENST00000396404		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000490878	ENST00000559878		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000490878	ENST00000405913		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000490878	ENST00000557858		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-intron	ENST00000490878	ENST00000492852		ChiTaRS3.1			BG620787	MAT2A	chr2	85768067	+	CYP19A1	chr15	51501777	-
intron-3CDS	ENST00000428443	ENST00000428443		ChiTaRS3.1			BM984417	SESTD1	chr2	179977487	+	SESTD1	chr2	179979949	-
intron-intron	ENST00000428443	ENST00000486468		ChiTaRS3.1			BM984417	SESTD1	chr2	179977487	+	SESTD1	chr2	179979949	-
intron-3CDS	ENST00000486468	ENST00000428443		ChiTaRS3.1			BM984417	SESTD1	chr2	179977487	+	SESTD1	chr2	179979949	-
intron-intron	ENST00000486468	ENST00000486468		ChiTaRS3.1			BM984417	SESTD1	chr2	179977487	+	SESTD1	chr2	179979949	-
intron-3CDS	ENST00000320892	ENST00000375735		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
intron-intron	ENST00000320892	ENST00000334267		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
intron-intron	ENST00000320892	ENST00000398093		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
intron-3CDS	ENST00000467276	ENST00000375735		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
intron-intron	ENST00000467276	ENST00000334267		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
intron-intron	ENST00000467276	ENST00000398093		ChiTaRS3.1			CB045807	RNF144A	chr2	7112877	+	DYNC2H1	chr11	103075656	+
Frame-shit	ENST00000313654	ENST00000313654		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000399516		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000269217		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000587184		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000313654	ENST00000588770		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000313654		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000399516		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000269217		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000587184		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000399516	ENST00000588770		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000313654		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000399516		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000269217		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000587184		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000269217	ENST00000588770		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000313654		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000399516		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000269217		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000587184		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000587184	ENST00000588770		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000313654		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000399516		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000269217		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000587184		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3UTR	ENST00000588770	ENST00000588770		ChiTaRS3.1			AW578487	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
intron-intron	ENST00000557636	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000557636	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000286650	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000286650	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000298832	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000298832	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000556893	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000556893	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000554510	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000554510	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000556977	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000556977	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000555422	ENST00000225402		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-intron	ENST00000555422	ENST00000590321		ChiTaRS3.1			AI904047	TTLL5	chr14	76203872	-	AATF	chr17	35314771	-
intron-3CDS	ENST00000317361	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000399767	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000399774	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000399765	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000342111	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000551952	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-3CDS	ENST00000473439	ENST00000326019		ChiTaRS3.1			BE222887	BID	chr22	18246590	+	SLC4A1AP	chr2	27900646	+
intron-intron	ENST00000259698	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000300737		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000527651		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000527484		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000533977		ChiTaRS3.1			BI021317	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-3UTR	ENST00000253778	ENST00000253778		ChiTaRS3.1			BE841297	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-intron	ENST00000253778	ENST00000520165		ChiTaRS3.1			BE841297	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-3UTR	ENST00000520165	ENST00000253778		ChiTaRS3.1			BE841297	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-intron	ENST00000520165	ENST00000520165		ChiTaRS3.1			BE841297	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
3UTR-3CDS	ENST00000450629	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000450629	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000450629	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000450629	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000450629	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000450629	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000338595	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000338595	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000338595	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000338595	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000338595	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000338595	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-3CDS	ENST00000401888	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-3CDS	ENST00000401888	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000401888	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000401888	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000401888	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000401888	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-3CDS	ENST00000477078	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-3CDS	ENST00000477078	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000477078	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000477078	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000477078	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
intron-intron	ENST00000477078	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000369707	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000369707	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000369707	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000369707	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000369707	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000369707	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000429569	ENST00000450629		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-3CDS	ENST00000429569	ENST00000338595		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000429569	ENST00000401888		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000429569	ENST00000477078		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000429569	ENST00000369707		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
3UTR-intron	ENST00000429569	ENST00000429569		ChiTaRS3.1			BE771867	GSTO2	chr10	106059051	-	GSTO2	chr10	106058886	+
5CDS-3UTR	ENST00000389682	ENST00000320033		ChiTaRS3.1			AW157777	TSN	chr2	122519075	+	ARL4D	chr17	41477958	-
intron-3UTR	ENST00000498545	ENST00000320033		ChiTaRS3.1			AW157777	TSN	chr2	122519075	+	ARL4D	chr17	41477958	-
5CDS-3UTR	ENST00000536142	ENST00000320033		ChiTaRS3.1			AW157777	TSN	chr2	122519075	+	ARL4D	chr17	41477958	-
5CDS-3UTR	ENST00000409193	ENST00000320033		ChiTaRS3.1			AW157777	TSN	chr2	122519075	+	ARL4D	chr17	41477958	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM886138	BCR	chr22	23632056	+	ABL1	chr9	133729676	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM886138	BCR	chr22	23632056	+	ABL1	chr9	133729676	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM886138	BCR	chr22	23632056	+	ABL1	chr9	133729676	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM886138	BCR	chr22	23632056	+	ABL1	chr9	133729676	+
intron-intron	ENST00000260810	ENST00000260810		ChiTaRS3.1			AA761237	TOPBP1	chr3	133334106	+	TOPBP1	chr3	133332878	+
intron-intron	ENST00000260810	ENST00000511439		ChiTaRS3.1			AA761237	TOPBP1	chr3	133334106	+	TOPBP1	chr3	133332878	+
intron-intron	ENST00000511439	ENST00000260810		ChiTaRS3.1			AA761237	TOPBP1	chr3	133334106	+	TOPBP1	chr3	133332878	+
intron-intron	ENST00000511439	ENST00000511439		ChiTaRS3.1			AA761237	TOPBP1	chr3	133334106	+	TOPBP1	chr3	133332878	+
intron-3CDS	ENST00000443617	ENST00000443617		ChiTaRS3.1			BF997527	HERC1	chr15	63958190	+	HERC1	chr15	63954016	+
intron-intron	ENST00000339208	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000346661	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000345615	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000502449	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000591288	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000394378	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000585472	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000588194	ENST00000356347		ChiTaRS3.1			AA521317	SYNRG	chr17	35877054	+	ZNF876P	chr4	212110	-
intron-intron	ENST00000421587	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000421587	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000421587	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000318588	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000318588	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000318588	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000361962	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000361962	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000361962	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378163	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378163	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378163	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378158	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378158	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378158	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378166	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378166	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378166	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000442742	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000442742	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000442742	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000472704	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000472704	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000472704	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378154	ENST00000436319		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378154	ENST00000370571		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-intron	ENST00000378154	ENST00000485434		ChiTaRS3.1			BU963327	CASK	chrX	41533083	-	COL24A1	chr1	86356928	-
intron-3UTR	ENST00000322507	ENST00000322507		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000322507	ENST00000345356		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000322507	ENST00000416123		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000322507	ENST00000483888		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000322507	ENST00000511023		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-3UTR	ENST00000345356	ENST00000322507		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000345356	ENST00000345356		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000345356	ENST00000416123		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000345356	ENST00000483888		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000345356	ENST00000511023		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-3UTR	ENST00000416123	ENST00000322507		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000416123	ENST00000345356		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000416123	ENST00000416123		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000416123	ENST00000483888		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000416123	ENST00000511023		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-3UTR	ENST00000483888	ENST00000322507		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000483888	ENST00000345356		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000483888	ENST00000416123		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000483888	ENST00000483888		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000483888	ENST00000511023		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-3UTR	ENST00000511023	ENST00000322507		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000511023	ENST00000345356		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000511023	ENST00000416123		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000511023	ENST00000483888		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-intron	ENST00000511023	ENST00000511023		ChiTaRS3.1			AL359627	COL12A1	chr6	75794622	+	COL12A1	chr6	75794572	-
intron-3UTR	ENST00000546961	ENST00000534336		ChiTaRS3.1			AA057327	SCN8A	chr12	52201150	-	MALAT1	chr11	65268045	-
intron-3UTR	ENST00000550891	ENST00000534336		ChiTaRS3.1			AA057327	SCN8A	chr12	52201150	-	MALAT1	chr11	65268045	-
5CDS-3UTR	ENST00000354534	ENST00000534336		ChiTaRS3.1			AA057327	SCN8A	chr12	52201150	-	MALAT1	chr11	65268045	-
5CDS-3UTR	ENST00000545061	ENST00000534336		ChiTaRS3.1			AA057327	SCN8A	chr12	52201150	-	MALAT1	chr11	65268045	-
intron-intron	ENST00000582151	ENST00000582151		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000582151	ENST00000250124		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000582151	ENST00000396501		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000582151	ENST00000423172		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000250124	ENST00000582151		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000250124	ENST00000250124		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000250124	ENST00000396501		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000250124	ENST00000423172		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000396501	ENST00000582151		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000396501	ENST00000250124		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000396501	ENST00000396501		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000396501	ENST00000423172		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000423172	ENST00000582151		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000423172	ENST00000250124		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000423172	ENST00000396501		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000423172	ENST00000423172		ChiTaRS3.1			BG251147	MPDU1	chr17	7495110	+	MPDU1	chr17	7495030	-
intron-intron	ENST00000379122	ENST00000335762		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399655		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000480911		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399644		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000344100		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399638		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399629		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399597		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000327702		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399621		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399649		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399637		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000402845		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399591		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399641		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000347598		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399606		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399595		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399601		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399603		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399634		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399617		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000406454		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000491104		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000335762		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399655		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000480911		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399644		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000344100		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399638		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399629		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399597		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000327702		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399621		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399649		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399637		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000402845		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399591		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399641		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000347598		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399606		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399595		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399601		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399603		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399634		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399617		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000406454		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000491104		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000335762		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399655		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000480911		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399644		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000344100		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399638		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399629		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399597		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000327702		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399621		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399649		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399637		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000402845		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399591		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399641		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000347598		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399606		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399595		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399601		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399603		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399634		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399617		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000406454		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000491104		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000335762		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399655		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000480911		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399644		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000344100		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399638		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399629		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399597		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000327702		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399621		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399649		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399637		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000402845		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399591		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399641		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000347598		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399606		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399595		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399601		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399603		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399634		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399617		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000406454		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000491104		ChiTaRS3.1			AW897907	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000380542	ENST00000380542		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000380542	ENST00000469089		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000380542	ENST00000526115		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000469089	ENST00000380542		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000469089	ENST00000469089		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000469089	ENST00000526115		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000526115	ENST00000380542		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000526115	ENST00000469089		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000526115	ENST00000526115		ChiTaRS3.1			DB239547	NAP1L4	chr11	2966413	-	NAP1L4	chr11	2969637	-
intron-intron	ENST00000410107	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000410107	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-intron	ENST00000410107	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000410107	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000410107	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000410107	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000397423	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000397423	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000397423	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000397423	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000397423	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000397423	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-intron	ENST00000495262	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000495262	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-intron	ENST00000495262	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000495262	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000495262	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-3UTR	ENST00000495262	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000379597	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000379597	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000379597	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000379597	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000379597	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000379597	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000316170	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000316170	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000316170	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000316170	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000316170	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000316170	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000265012	ENST00000410107		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000265012	ENST00000397423		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-intron	ENST00000265012	ENST00000495262		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000265012	ENST00000379597		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000265012	ENST00000316170		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
3UTR-3UTR	ENST00000265012	ENST00000265012		ChiTaRS3.1			BU155927	GCNT2	chr6	10627865	-	GCNT2	chr6	10627887	+
intron-intron	ENST00000371839	ENST00000389840		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371839	ENST00000585328		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371839	ENST00000586052		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371838	ENST00000389840		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371838	ENST00000585328		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371838	ENST00000586052		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371836	ENST00000389840		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371836	ENST00000585328		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000371836	ENST00000586052		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000334103	ENST00000389840		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000334103	ENST00000585328		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000334103	ENST00000586052		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000497451	ENST00000389840		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000497451	ENST00000585328		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
intron-intron	ENST00000497451	ENST00000586052		ChiTaRS3.1			AW841137	AGBL4	chr1	50138501	+	DNAH17	chr17	76456406	+
5CDS-intron	ENST00000402696	ENST00000509990		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000361059		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000504203		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000502929		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000394800		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000507197		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000394805		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000502499		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000510056		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000402696	ENST00000503811		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000509990		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000361059		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000504203		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000502929		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000394800		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000507197		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000394805		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000502499		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000510056		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
5CDS-intron	ENST00000264998	ENST00000503811		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000509990		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000361059		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000504203		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000502929		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000394800		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000507197		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000394805		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000502499		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000510056		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-intron	ENST00000475382	ENST00000503811		ChiTaRS3.1			AI064867	TF	chr3	133474221	+	MATR3	chr5	138641490	+
intron-3UTR	ENST00000399788	ENST00000575284		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000399788	ENST00000573708		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000399788	ENST00000293777		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-3UTR	ENST00000540838	ENST00000575284		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000540838	ENST00000573708		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000540838	ENST00000293777		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-3UTR	ENST00000382815	ENST00000575284		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000382815	ENST00000573708		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000382815	ENST00000293777		ChiTaRS3.1			BP397047	KDM5A	chr12	390639	+	MED11	chr17	4636377	+
intron-intron	ENST00000360605	ENST00000360605		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000360605	ENST00000542441		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000360605	ENST00000392271		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000360605	ENST00000312051		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000360605	ENST00000574176		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000542441	ENST00000360605		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000542441	ENST00000542441		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000542441	ENST00000392271		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000542441	ENST00000312051		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000542441	ENST00000574176		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000392271	ENST00000360605		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000392271	ENST00000542441		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000392271	ENST00000392271		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000392271	ENST00000312051		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000392271	ENST00000574176		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000312051	ENST00000360605		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000312051	ENST00000542441		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000312051	ENST00000392271		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000312051	ENST00000312051		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000312051	ENST00000574176		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000574176	ENST00000360605		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000574176	ENST00000542441		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000574176	ENST00000392271		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000574176	ENST00000312051		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000574176	ENST00000574176		ChiTaRS3.1			AA828807	URI1	chr19	30506717	+	URI1	chr19	30507234	-
intron-intron	ENST00000370706	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370706	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000357489	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000491832	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370708	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370702	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000370710	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000315677		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000581527		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000400147		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000400149		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000400155		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000400150		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000584874		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000534970		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000539435		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000581699		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000400145		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000515196		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
intron-intron	ENST00000510989	ENST00000478161		ChiTaRS3.1			AW237297	ZNF451	chr6	56976439	-	DLGAP1	chr18	3781638	+
5CDS-intron	ENST00000391918	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000391918	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000291295	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000291295	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000597743	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000597743	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
3UTR-intron	ENST00000477244	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
3UTR-3UTR	ENST00000477244	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000598871	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000598871	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000594523	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000594523	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000599839	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000599839	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-intron	ENST00000596362	ENST00000609205		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
5CDS-3UTR	ENST00000596362	ENST00000360270		ChiTaRS3.1			AW867517	CALM3	chr19	47112203	+	MSN	chrX	64961187	-
intron-3CDS	ENST00000537031	ENST00000322088		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-3CDS	ENST00000537031	ENST00000444322		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000537031	ENST00000477989		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000537031	ENST00000462990		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000537031	ENST00000473455		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-3CDS	ENST00000310594	ENST00000322088		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-3CDS	ENST00000310594	ENST00000444322		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000310594	ENST00000477989		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000310594	ENST00000462990		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000310594	ENST00000473455		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-3CDS	ENST00000397196	ENST00000322088		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-3CDS	ENST00000397196	ENST00000444322		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000397196	ENST00000477989		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000397196	ENST00000462990		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
3UTR-intron	ENST00000397196	ENST00000473455		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-3CDS	ENST00000542408	ENST00000322088		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-3CDS	ENST00000542408	ENST00000444322		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000542408	ENST00000477989		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000542408	ENST00000462990		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000542408	ENST00000473455		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-3CDS	ENST00000545747	ENST00000322088		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-3CDS	ENST00000545747	ENST00000444322		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000545747	ENST00000477989		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000545747	ENST00000462990		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000545747	ENST00000473455		ChiTaRS3.1			AI419727	WNT5B	chr12	1756150	-	PPP2R1A	chr19	52719887	-
intron-intron	ENST00000503278	ENST00000503278		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
intron-3UTR	ENST00000503278	ENST00000425103		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
intron-3UTR	ENST00000503278	ENST00000307659		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-intron	ENST00000425103	ENST00000503278		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-3UTR	ENST00000425103	ENST00000425103		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-3UTR	ENST00000425103	ENST00000307659		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-intron	ENST00000307659	ENST00000503278		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-3UTR	ENST00000307659	ENST00000425103		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
3UTR-3UTR	ENST00000307659	ENST00000307659		ChiTaRS3.1			CA313447	KIAA0232	chr4	6884755	-	KIAA0232	chr4	6884691	+
intron-intron	ENST00000299381	ENST00000299381		ChiTaRS3.1			BF091837	ANAPC16	chr10	73826804	+	ANAPC16	chr10	73826753	-
intron-intron	ENST00000299381	ENST00000470481		ChiTaRS3.1			BF091837	ANAPC16	chr10	73826804	+	ANAPC16	chr10	73826753	-
intron-intron	ENST00000470481	ENST00000299381		ChiTaRS3.1			BF091837	ANAPC16	chr10	73826804	+	ANAPC16	chr10	73826753	-
intron-intron	ENST00000470481	ENST00000470481		ChiTaRS3.1			BF091837	ANAPC16	chr10	73826804	+	ANAPC16	chr10	73826753	-
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM758287	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-intron	ENST00000325881	ENST00000373023		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000373026		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000373024		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000373021		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000373027		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000458109		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
intron-intron	ENST00000325881	ENST00000467066		ChiTaRS3.1			BF988467	SNX22	chr15	64452326	+	INPP5B	chr1	38338604	-
3UTR-3CDS	ENST00000331595	ENST00000322038		ChiTaRS3.1			DB313457	BGN	chrX	152774612	-	TSHZ1	chr18	72999940	-
3UTR-3CDS	ENST00000331595	ENST00000580243		ChiTaRS3.1			DB313457	BGN	chrX	152774612	-	TSHZ1	chr18	72999940	-
3UTR-3CDS	ENST00000480756	ENST00000322038		ChiTaRS3.1			DB313457	BGN	chrX	152774612	-	TSHZ1	chr18	72999940	-
3UTR-3CDS	ENST00000480756	ENST00000580243		ChiTaRS3.1			DB313457	BGN	chrX	152774612	-	TSHZ1	chr18	72999940	-
intron-intron	ENST00000451188	ENST00000295802		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000451188	ENST00000263854		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000451188	ENST00000457495		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000451188	ENST00000475624		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000438774	ENST00000295802		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000438774	ENST00000263854		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000438774	ENST00000457495		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-intron	ENST00000438774	ENST00000475624		ChiTaRS3.1			AW847517	TMEM151B	chr6	44272402	-	RETSAT	chr2	85570959	+
intron-5UTR	ENST00000255409	ENST00000255409		ChiTaRS3.1			DB159477	CHI3L1	chr1	203153921	-	CHI3L1	chr1	203155832	-
intron-intron	ENST00000272227	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000272227	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000404371	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000404371	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000404824	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000404824	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000540494	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000540494	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000381611	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000381611	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000489662	ENST00000272238		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-3UTR	ENST00000489662	ENST00000381661		ChiTaRS3.1			BE934567	PDIA6	chr2	10927501	+	ATP6V1C2	chr2	10924449	-
intron-intron	ENST00000368653	ENST00000371227		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371249		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000306402		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000353505		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371246		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000347291		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000393949		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371247		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000607232		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371245		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000361941		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000277982		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000354106		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371239		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000371241		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368653	ENST00000474353		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371227		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371249		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000306402		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000353505		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371246		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000347291		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000393949		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371247		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000607232		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371245		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000361941		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000277982		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000354106		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371239		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000371241		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000368654	ENST00000474353		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371227		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371249		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000306402		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000353505		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371246		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000347291		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000393949		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371247		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000607232		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371245		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000361941		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000277982		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000354106		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371239		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000371241		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
intron-intron	ENST00000484853	ENST00000474353		ChiTaRS3.1			AW361227	MKI67	chr10	129899686	+	SORBS1	chr10	97153945	+
5CDS-3UTR	ENST00000416293	ENST00000399289		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-3UTR	ENST00000416293	ENST00000432085		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-3UTR	ENST00000416293	ENST00000337385		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000416293	ENST00000399286		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000416293	ENST00000416357		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000416293	ENST00000399284		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000416293	ENST00000489175		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-3UTR	ENST00000261733	ENST00000399289		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-3UTR	ENST00000261733	ENST00000432085		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-3UTR	ENST00000261733	ENST00000337385		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000261733	ENST00000399286		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000261733	ENST00000416357		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000261733	ENST00000399284		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
5CDS-intron	ENST00000261733	ENST00000489175		ChiTaRS3.1			CA309127	ALDH2	chr12	112241751	-	KCNE1	chr21	35819819	+
intron-intron	ENST00000529410	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000529410	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000529410	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000529410	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000529410	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000533560	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000533560	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000533560	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000533560	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000533560	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361794	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361794	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361794	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361794	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361794	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368139	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368139	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368139	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368139	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368139	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000526019	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000526019	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000526019	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000526019	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000526019	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368136	ENST00000312210		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368136	ENST00000361936		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368136	ENST00000361738		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368136	ENST00000493834		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000368136	ENST00000470877		ChiTaRS3.1			AW748397	L3MBTL3	chr6	130419676	+	FAM63A	chr1	150978781	+
intron-intron	ENST00000361924	ENST00000244769		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000361924	ENST00000436367		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000361924	ENST00000467008		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000435830	ENST00000244769		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000435830	ENST00000436367		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000435830	ENST00000467008		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000444882	ENST00000244769		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000444882	ENST00000436367		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000444882	ENST00000467008		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000356847	ENST00000244769		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000356847	ENST00000436367		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
intron-intron	ENST00000356847	ENST00000467008		ChiTaRS3.1			BF886737	GOLGA4	chr3	37315238	-	ATXN1	chr6	16317386	-
5CDS-intron	ENST00000374820	ENST00000443765		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000374820	ENST00000239891		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000374820	ENST00000413537		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000374820	ENST00000496689		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000452740	ENST00000443765		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000452740	ENST00000239891		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000452740	ENST00000413537		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
5CDS-intron	ENST00000452740	ENST00000496689		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
intron-intron	ENST00000480175	ENST00000443765		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
intron-intron	ENST00000480175	ENST00000239891		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
intron-intron	ENST00000480175	ENST00000413537		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
intron-intron	ENST00000480175	ENST00000496689		ChiTaRS3.1			HM245395	PIGU	chr20	33203846	-	ALG5	chr13	37546195	-
intron-intron	ENST00000375664	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000375646	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000347934	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000354911	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000428935	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000532233	ENST00000344686		ChiTaRS3.1			CF887407	WAC	chr10	28846486	+	MAP3K14	chr17	43346656	+
intron-intron	ENST00000181796	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000181796	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000181796	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000181796	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000181796	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378470	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378470	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378470	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378470	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378470	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000468747	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000468747	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000468747	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000468747	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000468747	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378467	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378467	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378467	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378467	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378467	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378465	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378465	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378465	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378465	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378465	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378458	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378458	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378458	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378458	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378458	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000478076	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000478076	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000478076	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000478076	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000478076	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378462	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378462	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378462	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378462	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000378462	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000496330	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000496330	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000496330	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000496330	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000496330	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000479731	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000479731	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000479731	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000479731	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000479731	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000471815	ENST00000447054		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000471815	ENST00000265022		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000471815	ENST00000344484		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000471815	ENST00000382164		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-intron	ENST00000471815	ENST00000544847		ChiTaRS3.1			AA322377	FAM107B	chr10	14717034	+	DGKG	chr3	185969661	-
intron-3CDS	ENST00000216373	ENST00000216373		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-3CDS	ENST00000216373	ENST00000543680		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-intron	ENST00000216373	ENST00000555794		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-3CDS	ENST00000543680	ENST00000216373		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-3CDS	ENST00000543680	ENST00000543680		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-intron	ENST00000543680	ENST00000555794		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-3CDS	ENST00000555794	ENST00000216373		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-3CDS	ENST00000555794	ENST00000543680		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
intron-intron	ENST00000555794	ENST00000555794		ChiTaRS3.1			AB209277	SOS2	chr14	50585450	-	SOS2	chr14	50585478	+
3UTR-3CDS	ENST00000315717	ENST00000315717		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
3UTR-3CDS	ENST00000315717	ENST00000295685		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
3UTR-intron	ENST00000315717	ENST00000477992		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
3UTR-3CDS	ENST00000295685	ENST00000315717		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
3UTR-3CDS	ENST00000295685	ENST00000295685		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
3UTR-intron	ENST00000295685	ENST00000477992		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
intron-3CDS	ENST00000477992	ENST00000315717		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
intron-3CDS	ENST00000477992	ENST00000295685		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
intron-intron	ENST00000477992	ENST00000477992		ChiTaRS3.1			BE073187	ARPC2	chr2	219118966	+	ARPC2	chr2	219093522	+
intron-intron	ENST00000367142	ENST00000535572		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000537687		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000315939		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000447667		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000530271		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000540360		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000340908		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000367142	ENST00000574564		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000535572		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000537687		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000315939		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000447667		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000530271		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000540360		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000340908		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
intron-intron	ENST00000464938	ENST00000574564		ChiTaRS3.1			BE503407	NUCKS1	chr1	205686678	+	WNK1	chr12	978081	-
3UTR-3UTR	ENST00000420993	ENST00000459775		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000420993	ENST00000450066		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000420993	ENST00000409025		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000420993	ENST00000409470		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000420993	ENST00000323701		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000420993	ENST00000409766		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000459775		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000450066		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000409025		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000409470		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000323701		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000395698	ENST00000409766		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000459775		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000450066		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000409025		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000409470		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000323701		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000395701	ENST00000409766		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000459775		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000450066		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000409025		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000409470		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000323701		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
3UTR-3UTR	ENST00000299821	ENST00000409766		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000459775		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000450066		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000409025		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000409470		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000323701		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
intron-3UTR	ENST00000520297	ENST00000409766		ChiTaRS3.1			CB217287	NCAPH2	chr22	50961809	-	USP39	chr2	85866349	+
Frame-shit	ENST00000262225	ENST00000262225		ChiTaRS3.1			BQ776227	TMED2	chr12	124071308	-	TMED2	chr12	124069247	+
5CDS-intron	ENST00000262225	ENST00000509052		ChiTaRS3.1			BQ776227	TMED2	chr12	124071308	-	TMED2	chr12	124069247	+
5UTR-3CDS	ENST00000509052	ENST00000262225		ChiTaRS3.1			BQ776227	TMED2	chr12	124071308	-	TMED2	chr12	124069247	+
5UTR-intron	ENST00000509052	ENST00000509052		ChiTaRS3.1			BQ776227	TMED2	chr12	124071308	-	TMED2	chr12	124069247	+
intron-intron	ENST00000450793	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000450793	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000538141	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000538141	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000380180	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000380180	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000318007	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000318007	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000437932	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000437932	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000317968	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000317968	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000542407	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000542407	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000508216	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000508216	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000514743	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000514743	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000380176	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000380176	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000359265	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000359265	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000512274	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000512274	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000504489	ENST00000263642		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000504489	ENST00000421365		ChiTaRS3.1			AL080107	PDLIM5	chr4	95490529	+	IFIH1	chr2	163164969	-
intron-intron	ENST00000216281	ENST00000267485		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000216281	ENST00000334342		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000334701	ENST00000267485		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000334701	ENST00000334342		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000441629	ENST00000267485		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000441629	ENST00000334342		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000558600	ENST00000267485		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-intron	ENST00000558600	ENST00000334342		ChiTaRS3.1			AV707097	HSP90AA1	chr14	102551224	-	C14orf37	chr14	58737660	+
intron-3CDS	ENST00000375976	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000375976	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000375976	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000375976	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000211379	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000211379	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000211379	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000211379	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000439687	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000439687	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000439687	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000439687	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000404765	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000404765	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000404765	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000404765	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000375964	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000375964	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000375964	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000375964	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000362049	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000362049	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000362049	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000362049	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000470875	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000470875	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000470875	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000470875	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000442479	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000442479	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000442479	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000442479	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000449450	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000449450	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000449450	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000449450	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000417144	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000417144	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000417144	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000417144	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000551350	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000551350	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000551350	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000551350	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000497694	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000497694	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000497694	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000497694	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000422756	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000422756	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000422756	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000422756	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000425649	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000425649	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000425649	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000425649	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000434446	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000434446	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000434446	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000434446	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552467	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552467	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552467	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000552467	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000463220	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000463220	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000463220	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000463220	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000413922	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000413922	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000413922	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000413922	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000454478	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000454478	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000454478	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000454478	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000412012	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000412012	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000412012	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000412012	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000546462	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000546462	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000546462	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000546462	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460147	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460147	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460147	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000460147	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383446	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383446	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383446	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000383446	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000361076	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000361076	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000361076	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000361076	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383448	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383448	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000383448	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000383448	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552605	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552605	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552605	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000552605	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000471376	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000471376	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000471376	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000471376	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415373	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415373	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415373	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000415373	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000444402	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000444402	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000444402	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000444402	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415345	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415345	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000415345	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000415345	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000550393	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000550393	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000550393	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000550393	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000461852	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000461852	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000461852	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000461852	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000443182	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000443182	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000443182	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000443182	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000451932	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000451932	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000451932	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000451932	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000419847	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000419847	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000419847	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000419847	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552116	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552116	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000552116	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000552116	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460429	ENST00000264771		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460429	ENST00000515740		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-3CDS	ENST00000460429	ENST00000508204		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000460429	ENST00000504180		ChiTaRS3.1			BQ186937	BAG6	chr6	2939433	-	TMEM175	chr4	952252	+
intron-intron	ENST00000361525	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361525	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361525	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361525	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366940	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366940	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366940	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366940	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361395	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361395	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361395	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000361395	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366938	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366938	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366938	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366938	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000359162	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000359162	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000359162	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000359162	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493603	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493603	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493603	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493603	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000463665	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000463665	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000463665	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000463665	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000487276	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000487276	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000487276	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000487276	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493748	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493748	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493748	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000493748	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000471371	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000471371	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000471371	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000471371	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000391890	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000391890	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000391890	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000391890	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366937	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366937	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366937	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000366937	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000408911	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000408911	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000408911	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000408911	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000360012	ENST00000377351		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000360012	ENST00000335972		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000360012	ENST00000490869		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
intron-intron	ENST00000360012	ENST00000377269		ChiTaRS3.1			BE327527	ESRRG	chr1	217240030	+	UBA1	chrX	47066286	+
In-frame	ENST00000296255	ENST00000264674		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000392736		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000464456		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000472280		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000494292		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000468789		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000460814		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000296255	ENST00000433243		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-intron	ENST00000296255	ENST00000485957		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-3CDS	ENST00000497289	ENST00000264674		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000392736		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000464456		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000472280		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000494292		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000468789		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000460814		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000497289	ENST00000433243		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-intron	ENST00000497289	ENST00000485957		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-3CDS	ENST00000490166	ENST00000264674		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000392736		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000464456		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000472280		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000494292		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000468789		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000460814		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-5UTR	ENST00000490166	ENST00000433243		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
intron-intron	ENST00000490166	ENST00000485957		ChiTaRS3.1			AF310158	RPN1	chr3	128369383	-	MECOM	chr3	168849321	-
5CDS-5UTR	ENST00000288986	ENST00000344646		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000288986	ENST00000374366		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000288986	ENST00000374371		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-intron	ENST00000288986	ENST00000374370		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000288986	ENST00000335258		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000481752	ENST00000344646		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000481752	ENST00000374366		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000481752	ENST00000374371		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-intron	ENST00000481752	ENST00000374370		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000481752	ENST00000335258		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000469404	ENST00000344646		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000469404	ENST00000374366		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000469404	ENST00000374371		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-intron	ENST00000469404	ENST00000374370		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-5UTR	ENST00000469404	ENST00000335258		ChiTaRS3.1			DB051827	NCK1	chr3	136665018	-	ZFAND4	chr10	46159290	-
5CDS-intron	ENST00000542672	ENST00000542672		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000542672	ENST00000366578		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-intron	ENST00000542672	ENST00000492634		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000542672	ENST00000546208		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-intron	ENST00000366578	ENST00000542672		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000366578	ENST00000366578		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-intron	ENST00000366578	ENST00000492634		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000366578	ENST00000546208		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
intron-intron	ENST00000492634	ENST00000542672		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
intron-3UTR	ENST00000492634	ENST00000366578		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
intron-intron	ENST00000492634	ENST00000492634		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
intron-3UTR	ENST00000492634	ENST00000546208		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-intron	ENST00000546208	ENST00000542672		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000546208	ENST00000366578		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-intron	ENST00000546208	ENST00000492634		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
5CDS-3UTR	ENST00000546208	ENST00000546208		ChiTaRS3.1			T12517	ACTN2	chr1	236918382	+	ACTN2	chr1	236926119	-
intron-intron	ENST00000331302	ENST00000438793		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000346918		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000379787		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000348126		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000304400		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000274392		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000455264		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000331302	ENST00000513648		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000438793		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000346918		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000379787		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000348126		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000304400		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000274392		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000455264		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000323434	ENST00000513648		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000438793		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000346918		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000379787		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000348126		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000304400		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000274392		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000455264		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000536489	ENST00000513648		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000438793		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000346918		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000379787		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000348126		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000304400		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000274392		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000455264		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000576001	ENST00000513648		ChiTaRS3.1			BE709807	RPH3AL	chr17	179791	-	PAM	chr5	102357243	-
intron-intron	ENST00000481781	ENST00000396353		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000481781	ENST00000396355		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000481781	ENST00000396354		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000481781	ENST00000342673		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000481781	ENST00000571896		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000397270	ENST00000396353		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000397270	ENST00000396355		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000397270	ENST00000396354		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000397270	ENST00000342673		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-intron	ENST00000397270	ENST00000571896		ChiTaRS3.1			AF217977	INS-IGF2	chr11	2153915	-	NDE1	chr16	15797810	-
intron-5UTR	ENST00000438423	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000267811	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000452095	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000333725	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000557843	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000560764	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000543579	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000537840	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000343827	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000559710	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-5UTR	ENST00000559703	ENST00000229329		ChiTaRS3.1			DB053027	TCF12	chr15	57283551	+	CMAS	chr12	22199173	+
intron-intron	ENST00000281708	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000281708	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000281708	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603548	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603548	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603548	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604872	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604872	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604872	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000296555	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000296555	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000296555	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000263981	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000263981	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000263981	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000393956	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000393956	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000393956	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603841	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603841	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000603841	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604095	ENST00000377669		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604095	ENST00000377666		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
intron-intron	ENST00000604095	ENST00000472022		ChiTaRS3.1			AI133397	FBXW7	chr4	153250761	+	KLF12	chr13	74683666	-
3UTR-3UTR	ENST00000367240	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000367240	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000295706	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000295706	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000447715	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000447715	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000414050	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000414050	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000272198	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
3UTR-3UTR	ENST00000272198	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000599966	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000599966	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000594572	ENST00000367268		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-3UTR	ENST00000594572	ENST00000367267		ChiTaRS3.1			DB297497	PPFIA4	chr1	203047731	-	SYT2	chr1	202565206	+
intron-intron	ENST00000215829	ENST00000215829		ChiTaRS3.1			CB053297	SNRPD3	chr22	24970293	+	SNRPD3	chr22	24969661	+
intron-intron	ENST00000215829	ENST00000402849		ChiTaRS3.1			CB053297	SNRPD3	chr22	24970293	+	SNRPD3	chr22	24969661	+
intron-intron	ENST00000402849	ENST00000215829		ChiTaRS3.1			CB053297	SNRPD3	chr22	24970293	+	SNRPD3	chr22	24969661	+
intron-intron	ENST00000402849	ENST00000402849		ChiTaRS3.1			CB053297	SNRPD3	chr22	24970293	+	SNRPD3	chr22	24969661	+
intron-3CDS	ENST00000295373	ENST00000520602		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000370576		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000536274		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000370578		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000414978		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000519895		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000370573		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000295373	ENST00000338585		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-intron	ENST00000295373	ENST00000483690		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000520602		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000370576		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000536274		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000370578		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000414978		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000519895		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000370573		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3CDS	ENST00000479345	ENST00000338585		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-intron	ENST00000479345	ENST00000483690		ChiTaRS3.1			DA274457	DHX57	chr2	39070933	+	MCF2	chrX	138687939	-
intron-3UTR	ENST00000254351	ENST00000405995		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000254351	ENST00000357304		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000254351	ENST00000458550		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000254351	ENST00000372249		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000254351	ENST00000465931		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000381150	ENST00000405995		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000381150	ENST00000357304		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000381150	ENST00000458550		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000381150	ENST00000372249		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000381150	ENST00000465931		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000403076	ENST00000405995		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000403076	ENST00000357304		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000403076	ENST00000458550		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000403076	ENST00000372249		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000403076	ENST00000465931		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000482879	ENST00000405995		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000482879	ENST00000357304		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000482879	ENST00000458550		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-intron	ENST00000482879	ENST00000372249		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000482879	ENST00000465931		ChiTaRS3.1			AA368147	SDC1	chr2	20401808	+	PRRC2B	chr9	134374752	+
intron-3UTR	ENST00000313164	ENST00000297436		ChiTaRS3.1			BP426067	C7	chr5	40936975	+	DEFA6	chr8	6782338	-
intron-3UTR	ENST00000494960	ENST00000297436		ChiTaRS3.1			BP426067	C7	chr5	40936975	+	DEFA6	chr8	6782338	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			BI225117	IGHG1	chr14	106321117	+	IGHG1	chr14	106321057	-
intron-3CDS	ENST00000446176	ENST00000348956		ChiTaRS3.1			BE928567	FNBP1	chr9	132797574	+	CKB	chr14	103988695	+
intron-3CDS	ENST00000420781	ENST00000348956		ChiTaRS3.1			BE928567	FNBP1	chr9	132797574	+	CKB	chr14	103988695	+
intron-3CDS	ENST00000355681	ENST00000348956		ChiTaRS3.1			BE928567	FNBP1	chr9	132797574	+	CKB	chr14	103988695	+
intron-3CDS	ENST00000443566	ENST00000348956		ChiTaRS3.1			BE928567	FNBP1	chr9	132797574	+	CKB	chr14	103988695	+
intron-3CDS	ENST00000478129	ENST00000348956		ChiTaRS3.1			BE928567	FNBP1	chr9	132797574	+	CKB	chr14	103988695	+
intron-3CDS	ENST00000339594	ENST00000339594		ChiTaRS3.1			BF326857	BAZ1B	chr7	72891980	+	BAZ1B	chr7	72891827	-
intron-3CDS	ENST00000339594	ENST00000404251		ChiTaRS3.1			BF326857	BAZ1B	chr7	72891980	+	BAZ1B	chr7	72891827	-
intron-3CDS	ENST00000404251	ENST00000339594		ChiTaRS3.1			BF326857	BAZ1B	chr7	72891980	+	BAZ1B	chr7	72891827	-
intron-3CDS	ENST00000404251	ENST00000404251		ChiTaRS3.1			BF326857	BAZ1B	chr7	72891980	+	BAZ1B	chr7	72891827	-
3UTR-3CDS	ENST00000413040	ENST00000413040		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000413040	ENST00000568733		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000413040	ENST00000566856		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000413040	ENST00000355851		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-intron	ENST00000413040	ENST00000477666		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000568733	ENST00000413040		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000568733	ENST00000568733		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000568733	ENST00000566856		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000568733	ENST00000355851		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-intron	ENST00000568733	ENST00000477666		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000566856	ENST00000413040		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000566856	ENST00000568733		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000566856	ENST00000566856		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000566856	ENST00000355851		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-intron	ENST00000566856	ENST00000477666		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000355851	ENST00000413040		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000355851	ENST00000568733		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000355851	ENST00000566856		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-3CDS	ENST00000355851	ENST00000355851		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
3UTR-intron	ENST00000355851	ENST00000477666		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-3CDS	ENST00000477666	ENST00000413040		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-3CDS	ENST00000477666	ENST00000568733		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-3CDS	ENST00000477666	ENST00000566856		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-3CDS	ENST00000477666	ENST00000355851		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-intron	ENST00000477666	ENST00000477666		ChiTaRS3.1			BP194857	NUB1	chr7	151075307	+	NUB1	chr7	151073760	+
intron-intron	ENST00000335351	ENST00000335351		ChiTaRS3.1			AA346677	TCFL5	chr20	61484605	-	TCFL5	chr20	61485621	-
intron-intron	ENST00000335351	ENST00000217162		ChiTaRS3.1			AA346677	TCFL5	chr20	61484605	-	TCFL5	chr20	61485621	-
intron-intron	ENST00000217162	ENST00000335351		ChiTaRS3.1			AA346677	TCFL5	chr20	61484605	-	TCFL5	chr20	61485621	-
intron-intron	ENST00000217162	ENST00000217162		ChiTaRS3.1			AA346677	TCFL5	chr20	61484605	-	TCFL5	chr20	61485621	-
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			AI874377	RTN4	chr2	55200089	+	RTN4	chr2	55202600	-
intron-intron	ENST00000283148	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000283148	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000540130	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409501	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000409032	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000428048	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000359282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000603815		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000437231		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000447282		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000549863		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000359462		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000546463		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000552296		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000552819		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000455667		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000439930		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000548933		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-intron	ENST00000479621	ENST00000541275		ChiTaRS3.1			BE156057	UXS1	chr2	106713264	+	PCBP2	chr12	53854515	+
intron-3CDS	ENST00000462274	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000462274	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000462274	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000462274	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000462274	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000462274	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000462274	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000338785	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000338785	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000451934	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000451934	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000321219	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000321219	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000339659	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000339659	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398960	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000398960	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000398956	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000398956	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000541925		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000542156		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000370390		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000451863		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000544228		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-3CDS	ENST00000455387	ENST00000445323		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
intron-5UTR	ENST00000455387	ENST00000538506		ChiTaRS3.1			M78377	DYRK1A	chr21	38809313	-	MTMR1	chrX	149895693	+
3UTR-intron	ENST00000375514	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000375514	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000415876	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000535165	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000493021	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000272716	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
3UTR-intron	ENST00000446997	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000375514		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000415876		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000535165		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000493021		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000272716		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000446997		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-intron	ENST00000421911	ENST00000421911		ChiTaRS3.1			AB040457	SLC4A10	chr2	162840243	+	SLC4A10	chr2	162759569	-
intron-3CDS	ENST00000566157	ENST00000566157		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000566157	ENST00000568397		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-intron	ENST00000566157	ENST00000565209		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000568397	ENST00000566157		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000568397	ENST00000568397		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-intron	ENST00000568397	ENST00000565209		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000565209	ENST00000566157		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000565209	ENST00000568397		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-intron	ENST00000565209	ENST00000565209		ChiTaRS3.1			BG996237	OGFOD1	chr16	56496451	-	OGFOD1	chr16	56510071	+
intron-3CDS	ENST00000519097	ENST00000368468		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-3CDS	ENST00000519097	ENST00000368466		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-3CDS	ENST00000380036	ENST00000368468		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-3CDS	ENST00000380036	ENST00000368466		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-3CDS	ENST00000406359	ENST00000368468		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-3CDS	ENST00000406359	ENST00000368466		ChiTaRS3.1			X74837	TEK	chr9	27160653	-	MAN1A1	chr6	119670089	-
intron-intron	ENST00000404771	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404771	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372440	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000372443	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286628	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000286627	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000354353	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000404857	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000406533	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000484507	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000481070	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000404771		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000372440		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000372443		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000286628		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000286627		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000354353		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000404857		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000406533		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000484507		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000481070		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-intron	ENST00000480683	ENST00000480683		ChiTaRS3.1			AA225487	KCNMA1	chr10	79146575	-	KCNMA1	chr10	79146505	+
intron-3UTR	ENST00000324589	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000324589	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000324589	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000349752	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000349752	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000406653	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000406653	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000356174	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000356174	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000420311	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000420311	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000324589		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000349752		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000406653		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000356174		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3UTR	ENST00000486564	ENST00000420311		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-5UTR	ENST00000486564	ENST00000486564		ChiTaRS3.1			BU685357	GALNT14	chr2	31133529	+	GALNT14	chr2	31133710	-
intron-3CDS	ENST00000435159	ENST00000261769		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000435159	ENST00000422392		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000435159	ENST00000562836		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000315208	ENST00000261769		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000315208	ENST00000422392		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000315208	ENST00000562836		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000537538	ENST00000261769		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3CDS	ENST00000537538	ENST00000422392		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-3UTR	ENST00000537538	ENST00000562836		ChiTaRS3.1			BE816637	TMEM132C	chr12	128928593	+	CDH1	chr16	68846084	+
intron-intron	ENST00000444631	ENST00000391976		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000444631	ENST00000310931		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000444631	ENST00000391975		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000444631	ENST00000427183		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000444631	ENST00000476807		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000336133	ENST00000391976		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000336133	ENST00000310931		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000336133	ENST00000391975		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000336133	ENST00000427183		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000336133	ENST00000476807		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000552080	ENST00000391976		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000552080	ENST00000310931		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000552080	ENST00000391975		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000552080	ENST00000427183		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
intron-intron	ENST00000552080	ENST00000476807		ChiTaRS3.1			AI393207	SARNP	chr12	56182570	-	HDLBP	chr2	242240440	-
5CDS-intron	ENST00000372725	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-3UTR	ENST00000372725	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372725	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372724	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-3UTR	ENST00000372724	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372724	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000287239	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-3UTR	ENST00000287239	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000287239	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372714	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-3UTR	ENST00000372714	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372714	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372711	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-3UTR	ENST00000372711	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
5CDS-intron	ENST00000372711	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
3UTR-intron	ENST00000490365	ENST00000519728		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
3UTR-3UTR	ENST00000490365	ENST00000520220		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
3UTR-intron	ENST00000490365	ENST00000420292		ChiTaRS3.1			BE720017	KAT6B	chr10	76780998	-	LYN	chr8	56923442	+
intron-intron	ENST00000391956	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000391956	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000391956	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000391956	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000391956	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000391956	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000221327	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000592529	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000586637	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000587047	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000391956		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000221327		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000592529		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000586637		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000587047		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-intron	ENST00000585514	ENST00000585514		ChiTaRS3.1			BG945067	ZNF180	chr19	45004029	+	ZNF180	chr19	45003694	-
intron-3CDS	ENST00000268124	ENST00000268124		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000268124	ENST00000442287		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-intron	ENST00000268124	ENST00000525806		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000442287	ENST00000268124		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000442287	ENST00000442287		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-intron	ENST00000442287	ENST00000525806		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000525806	ENST00000268124		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000525806	ENST00000442287		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-intron	ENST00000525806	ENST00000525806		ChiTaRS3.1			BQ306477	POLG	chr15	89866046	+	POLG	chr15	89865083	-
intron-3CDS	ENST00000426263	ENST00000356654		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000426263	ENST00000396684		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000475162	ENST00000356654		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000475162	ENST00000396684		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000415851	ENST00000356654		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000415851	ENST00000396684		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000372500	ENST00000356654		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
intron-3CDS	ENST00000372500	ENST00000396684		ChiTaRS3.1			AW352237	SLC2A1	chr1	43406854	-	ATN1	chr12	7047828	-
3UTR-3CDS	ENST00000558401	ENST00000558401		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000558401	ENST00000559916		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000558401	ENST00000544417		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-intron	ENST00000558401	ENST00000559220		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000558401		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000559916		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000559916	ENST00000544417		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-intron	ENST00000559916	ENST00000559220		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000558401		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000559916		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-3CDS	ENST00000544417	ENST00000544417		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-intron	ENST00000544417	ENST00000559220		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000558401		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000559916		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-3CDS	ENST00000559220	ENST00000544417		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
3UTR-intron	ENST00000559220	ENST00000559220		ChiTaRS3.1			AW371007	B2M	chr15	45010282	+	B2M	chr15	45007782	+
intron-intron	ENST00000331159	ENST00000331159		ChiTaRS3.1			AI682207	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000331159	ENST00000577233		ChiTaRS3.1			AI682207	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000577233	ENST00000331159		ChiTaRS3.1			AI682207	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000577233	ENST00000577233		ChiTaRS3.1			AI682207	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
3UTR-3UTR	ENST00000333538	ENST00000333538		ChiTaRS3.1			BI001777	WBSCR17	chr7	71177662	-	WBSCR17	chr7	71177248	+
3UTR-3UTR	ENST00000333538	ENST00000498380		ChiTaRS3.1			BI001777	WBSCR17	chr7	71177662	-	WBSCR17	chr7	71177248	+
3UTR-3UTR	ENST00000498380	ENST00000333538		ChiTaRS3.1			BI001777	WBSCR17	chr7	71177662	-	WBSCR17	chr7	71177248	+
3UTR-3UTR	ENST00000498380	ENST00000498380		ChiTaRS3.1			BI001777	WBSCR17	chr7	71177662	-	WBSCR17	chr7	71177248	+
intron-5UTR	ENST00000335351	ENST00000438552		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000381342		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000335351	ENST00000339610		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000438552		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000381342		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-5UTR	ENST00000217162	ENST00000339610		ChiTaRS3.1			BG472537	TCFL5	chr20	61476986	+	SNRPB	chr20	2451402	-
intron-intron	ENST00000437600	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000437600	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292538	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000393824	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000547394	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000360264	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000425244	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000292535	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000549414	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000556210	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000550008	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000546411	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000437600		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000292538		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000393824		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000547394		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000360264		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000425244		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000292535		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000549414		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000556210		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000550008		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000546411		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
intron-intron	ENST00000560541	ENST00000560541		ChiTaRS3.1			AA077917	CUX1	chr7	101798309	+	CUX1	chr7	101798492	-
5CDS-intron	ENST00000395211	ENST00000291572		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398061		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000327505		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398063		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000398058		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000546158		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000395211	ENST00000479117		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000291572		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398061		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000327505		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398063		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000398058		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000546158		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000259365	ENST00000479117		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000291572		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398061		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000327505		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398063		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000398058		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000546158		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
5CDS-intron	ENST00000375175	ENST00000479117		ChiTaRS3.1			BF955597	TMOD1	chr9	100353676	+	AGPAT3	chr21	45302061	+
intron-3UTR	ENST00000505731	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000505731	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000505731	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000505731	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000507999	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000507999	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000507999	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000507999	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000512712	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000512712	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000512712	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000512712	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000515194	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000515194	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000515194	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000515194	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000503709	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000503709	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000503709	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000503709	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000507702	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000507702	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000507702	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000507702	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000512802	ENST00000558401		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000512802	ENST00000559916		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000512802	ENST00000544417		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-3UTR	ENST00000512802	ENST00000559220		ChiTaRS3.1			EL594117	NOP14-AS1	chr4	2945932	-	B2M	chr15	45010021	-
intron-intron	ENST00000266037	ENST00000266037		ChiTaRS3.1			CV396597	DOCK3	chr3	51150984	-	DOCK3	chr3	51150897	+
5CDS-5UTR	ENST00000356530	ENST00000269228		ChiTaRS3.1			BP362977	HIST1H2BE	chr6	26184457	+	NPC1	chr18	21166470	-
5CDS-intron	ENST00000356530	ENST00000412552		ChiTaRS3.1			BP362977	HIST1H2BE	chr6	26184457	+	NPC1	chr18	21166470	-
5CDS-intron	ENST00000356530	ENST00000540608		ChiTaRS3.1			BP362977	HIST1H2BE	chr6	26184457	+	NPC1	chr18	21166470	-
In-frame	ENST00000225402	ENST00000225402		ChiTaRS3.1			AA099987	AATF	chr17	35310579	-	AATF	chr17	35311162	+
5CDS-intron	ENST00000225402	ENST00000590321		ChiTaRS3.1			AA099987	AATF	chr17	35310579	-	AATF	chr17	35311162	+
intron-3CDS	ENST00000590321	ENST00000225402		ChiTaRS3.1			AA099987	AATF	chr17	35310579	-	AATF	chr17	35311162	+
intron-intron	ENST00000590321	ENST00000590321		ChiTaRS3.1			AA099987	AATF	chr17	35310579	-	AATF	chr17	35311162	+
intron-3CDS	ENST00000336868	ENST00000262133		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3UTR	ENST00000336868	ENST00000379935		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-intron	ENST00000336868	ENST00000544545		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3CDS	ENST00000577098	ENST00000262133		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3UTR	ENST00000577098	ENST00000379935		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-intron	ENST00000577098	ENST00000544545		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3CDS	ENST00000575801	ENST00000262133		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3UTR	ENST00000575801	ENST00000379935		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-intron	ENST00000575801	ENST00000544545		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3CDS	ENST00000538650	ENST00000262133		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3UTR	ENST00000538650	ENST00000379935		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-intron	ENST00000538650	ENST00000544545		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3CDS	ENST00000537628	ENST00000262133		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-3UTR	ENST00000537628	ENST00000379935		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
intron-intron	ENST00000537628	ENST00000544545		ChiTaRS3.1			AW952727	NXN	chr17	791922	+	RBL2	chr16	53513796	+
Frame-shit	ENST00000447274	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000447274	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000447274	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
In-frame	ENST00000447274	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000447274	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000447274	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000511455	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000511455	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000511455	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
In-frame	ENST00000511455	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000511455	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000511455	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000308440	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000308440	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000308440	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
In-frame	ENST00000308440	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000308440	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000308440	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000514166	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000514166	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
Frame-shit	ENST00000514166	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
In-frame	ENST00000514166	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000514166	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-intron	ENST00000514166	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000515828	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000515828	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000515828	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000515828	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-intron	ENST00000515828	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-intron	ENST00000515828	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000504236	ENST00000447274		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000504236	ENST00000511455		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000504236	ENST00000308440		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-3CDS	ENST00000504236	ENST00000514166		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-intron	ENST00000504236	ENST00000515828		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
intron-intron	ENST00000504236	ENST00000504236		ChiTaRS3.1			CN354157	ANKRD13D	chr11	67067359	+	ANKRD13D	chr11	67057883	+
5CDS-3UTR	ENST00000399312	ENST00000399312		ChiTaRS3.1			BI002237	MRPS6	chr21	35497647	-	MRPS6	chr21	35515077	-
5CDS-3UTR	ENST00000399312	ENST00000482679		ChiTaRS3.1			BI002237	MRPS6	chr21	35497647	-	MRPS6	chr21	35515077	-
3UTR-3UTR	ENST00000482679	ENST00000399312		ChiTaRS3.1			BI002237	MRPS6	chr21	35497647	-	MRPS6	chr21	35515077	-
3UTR-3UTR	ENST00000482679	ENST00000482679		ChiTaRS3.1			BI002237	MRPS6	chr21	35497647	-	MRPS6	chr21	35515077	-
5UTR-intron	ENST00000584667	ENST00000536005		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000299694		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000561796		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000564819		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000563075		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000536005		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000299694		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000561796		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000564819		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000563075		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000536005		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000299694		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000561796		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000564819		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000563075		ChiTaRS3.1			CD624677	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425239	BCR	chr22	23632721	+	ABL1	chr9	133686163	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425239	BCR	chr22	23632721	+	ABL1	chr9	133686163	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425239	BCR	chr22	23632721	+	ABL1	chr9	133686163	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425239	BCR	chr22	23632721	+	ABL1	chr9	133686163	+
intron-3UTR	ENST00000340811	ENST00000309424		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-intron	ENST00000340811	ENST00000589804		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-3UTR	ENST00000070846	ENST00000309424		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-intron	ENST00000070846	ENST00000589804		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-3UTR	ENST00000546741	ENST00000309424		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-intron	ENST00000546741	ENST00000589804		ChiTaRS3.1			BG956107	PKP2	chr12	32995524	+	CD3EAP	chr19	45913055	-
intron-3CDS	ENST00000330978	ENST00000369878		ChiTaRS3.1			BG988047	BOLA2	chr16	30005413	+	CNNM2	chr10	104828464	-
intron-3CDS	ENST00000330978	ENST00000433628		ChiTaRS3.1			BG988047	BOLA2	chr16	30005413	+	CNNM2	chr10	104828464	-
intron-intron	ENST00000330978	ENST00000369875		ChiTaRS3.1			BG988047	BOLA2	chr16	30005413	+	CNNM2	chr10	104828464	-
intron-3UTR	ENST00000330978	ENST00000475511		ChiTaRS3.1			BG988047	BOLA2	chr16	30005413	+	CNNM2	chr10	104828464	-
intron-intron	ENST00000534863	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000534863	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000534863	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000470751	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000470751	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000272902	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000272902	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000383843	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000383843	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000458465	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000458465	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000534863		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000470751		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-3UTR	ENST00000405420	ENST00000272902		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000383843		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000458465		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000405420	ENST00000405420		ChiTaRS3.1			AI126937	SUMF1	chr3	4402901	+	SUMF1	chr3	4403174	-
intron-intron	ENST00000521193	ENST00000354725		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000521193	ENST00000467238		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000519148	ENST00000354725		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000519148	ENST00000467238		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000505857	ENST00000354725		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000505857	ENST00000467238		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000329245	ENST00000354725		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000329245	ENST00000467238		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000523676	ENST00000354725		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-intron	ENST00000523676	ENST00000467238		ChiTaRS3.1			AW861197	TOP1MT	chr8	144392312	+	SND1	chr7	127507030	+
intron-5UTR	ENST00000307630	ENST00000294072		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-5UTR	ENST00000307630	ENST00000426130		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-5UTR	ENST00000307630	ENST00000540317		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-5UTR	ENST00000307630	ENST00000447532		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-5UTR	ENST00000307630	ENST00000546151		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-5UTR	ENST00000307630	ENST00000544118		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-intron	ENST00000307630	ENST00000536915		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-intron	ENST00000307630	ENST00000539890		ChiTaRS3.1			BG824227	YWHAG	chr7	75988140	+	CYB561A3	chr11	61129278	-
intron-intron	ENST00000529022	ENST00000529022		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
intron-3UTR	ENST00000529022	ENST00000292524		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
intron-intron	ENST00000529022	ENST00000528528		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000292524	ENST00000529022		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-3UTR	ENST00000292524	ENST00000292524		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000292524	ENST00000528528		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000528528	ENST00000529022		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-3UTR	ENST00000528528	ENST00000292524		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000528528	ENST00000528528		ChiTaRS3.1			CA450607	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
5CDS-intron	ENST00000402714	ENST00000476233		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
5CDS-intron	ENST00000402714	ENST00000354667		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
5CDS-intron	ENST00000402714	ENST00000356674		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000544450	ENST00000476233		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000544450	ENST00000354667		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000544450	ENST00000356674		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
5CDS-intron	ENST00000392920	ENST00000476233		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
5CDS-intron	ENST00000392920	ENST00000354667		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
5CDS-intron	ENST00000392920	ENST00000356674		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000555048	ENST00000476233		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000555048	ENST00000354667		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000555048	ENST00000356674		ChiTaRS3.1			BU677717	EVL	chr14	100608079	-	HNRNPA2B1	chr7	26236016	+
intron-intron	ENST00000342213	ENST00000532984		ChiTaRS3.1			AI989617	CLEC14A	chr14	38723576	+	FXYD6-FXYD2	chr11	117708891	+
3UTR-intron	ENST00000368358	ENST00000368395		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000338684		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000438413		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000457295		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000462215		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368392		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368393		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368390		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368396		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000343256		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368398		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000368389		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000342482		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000368358	ENST00000337604		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368395		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000338684		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000438413		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000457295		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000462215		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368392		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368393		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368390		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368396		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000343256		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368398		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000368389		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000342482		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
3UTR-intron	ENST00000496230	ENST00000337604		ChiTaRS3.1			AI675977	HCN3	chr1	155259558	+	MUC1	chr1	155159684	+
5UTR-intron	ENST00000261182	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000261182	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000261182	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000261182	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000261182	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000393263	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000393263	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000393263	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000393263	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000393263	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000431879	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000431879	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000431879	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000431879	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000431879	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000547773	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000547773	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000547773	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000547773	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000547773	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000544816	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000544816	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000544816	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000544816	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000544816	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000542344	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000542344	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000542344	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000542344	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000542344	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000535020	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000535020	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000535020	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000535020	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000535020	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000549596	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000549596	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000549596	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000549596	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000549596	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-intron	ENST00000547993	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-intron	ENST00000547993	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-intron	ENST00000547993	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-intron	ENST00000547993	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-intron	ENST00000547993	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000552342	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000552342	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000552342	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000552342	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000552342	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000548044	ENST00000370440		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000548044	ENST00000347275		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000548044	ENST00000337393		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000548044	ENST00000361321		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
5UTR-intron	ENST00000548044	ENST00000467231		ChiTaRS3.1			BE883237	NAP1L1	chr12	76478345	-	ZNF644	chr1	91486759	-
intron-5UTR	ENST00000204615	ENST00000204615		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000204615	ENST00000445696		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000204615	ENST00000421442		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000204615	ENST00000477594		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000445696	ENST00000204615		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000445696	ENST00000445696		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000445696	ENST00000421442		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000445696	ENST00000477594		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000421442	ENST00000204615		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000421442	ENST00000445696		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000421442	ENST00000421442		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000421442	ENST00000477594		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000477594	ENST00000204615		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-5UTR	ENST00000477594	ENST00000445696		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000477594	ENST00000421442		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-intron	ENST00000477594	ENST00000477594		ChiTaRS3.1			D32047	THPO	chr3	184094123	+	THPO	chr3	184094070	-
intron-3UTR	ENST00000607838	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000607838	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000607838	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000607838	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000607838	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000607838	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000607838	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000607838	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000607838	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000591724	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000591724	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000591724	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000591724	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000332065	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000332065	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000332065	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000332065	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000589210	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000589210	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000589210	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000589210	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000335146	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000335146	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000335146	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000335146	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000467929	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000467929	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000467929	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000467929	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000405575	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000405575	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000405575	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000405575	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000411744	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000411744	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000411744	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000411744	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000607838		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000406660	ENST00000591724		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000332065		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000589210		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000335146		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000467929		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3UTR	ENST00000406660	ENST00000405575		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000406660	ENST00000411744		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-intron	ENST00000406660	ENST00000406660		ChiTaRS3.1			BF855617	EXOC7	chr17	74084966	+	EXOC7	chr17	74079687	+
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			AI656047	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000366730	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000391865	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
intron-3CDS	ENST00000366726	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000312726	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000366728	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
intron-3CDS	ENST00000366723	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
intron-3CDS	ENST00000366722	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
intron-3CDS	ENST00000366721	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000366718	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000470040	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
3UTR-3CDS	ENST00000366716	ENST00000297157		ChiTaRS3.1			BU676367	GUK1	chr1	228336597	-	RP9	chr7	33136167	-
intron-intron	ENST00000409558	ENST00000560606		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000409558	ENST00000300069		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000272322	ENST00000560606		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000272322	ENST00000300069		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000354504	ENST00000560606		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000354504	ENST00000300069		ChiTaRS3.1			AI637777	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-3CDS	ENST00000579226	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000579226	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-3CDS	ENST00000217652	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000217652	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-3CDS	ENST00000578611	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000578611	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-3CDS	ENST00000585090	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000585090	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-3CDS	ENST00000580887	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000580887	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-3CDS	ENST00000536605	ENST00000257264		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-5UTR	ENST00000536605	ENST00000532419		ChiTaRS3.1			BF825717	MYL12A	chr18	3252276	-	TCN1	chr11	59629118	-
intron-intron	ENST00000595125	ENST00000595125		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
intron-3UTR	ENST00000595125	ENST00000423777		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
intron-intron	ENST00000595125	ENST00000600336		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
3UTR-intron	ENST00000423777	ENST00000595125		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
3UTR-3UTR	ENST00000423777	ENST00000423777		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
3UTR-intron	ENST00000423777	ENST00000600336		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
intron-intron	ENST00000600336	ENST00000595125		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
intron-3UTR	ENST00000600336	ENST00000423777		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
intron-intron	ENST00000600336	ENST00000600336		ChiTaRS3.1			BM466687	ATF5	chr19	50436594	-	ATF5	chr19	50436769	+
3UTR-intron	ENST00000300006	ENST00000340888		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000370150		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000393831		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000370142		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000370145		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000447676		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000300006	ENST00000475172		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000340888		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000370150		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000393831		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000370142		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000370145		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000447676		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000566490	ENST00000475172		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000340888		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000370150		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000393831		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000370142		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000370145		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000447676		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
3UTR-intron	ENST00000452191	ENST00000475172		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000340888		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000370150		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000393831		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000370142		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000370145		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000447676		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000561692	ENST00000475172		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000340888		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000370150		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000393831		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000370142		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000370145		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000447676		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000565913	ENST00000475172		ChiTaRS3.1			AI141657	C16orf45	chr16	15681452	-	PNCK	chrX	152935905	+
intron-intron	ENST00000354817	ENST00000354817		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000527202		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000532502		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000354817		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000527202		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000532502		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000354817		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000527202		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000532502		ChiTaRS3.1			BF906017	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
3UTR-intron	ENST00000373580	ENST00000542265		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000373580	ENST00000542314		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000373580	ENST00000538804		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-3UTR	ENST00000373580	ENST00000539446		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000373580	ENST00000535200		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000288815	ENST00000542265		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000288815	ENST00000542314		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000288815	ENST00000538804		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-3UTR	ENST00000288815	ENST00000539446		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
3UTR-intron	ENST00000288815	ENST00000535200		ChiTaRS3.1			AK054867	OLFML2A	chr9	127574335	+	PXN-AS1	chr12	120649073	-
intron-3CDS	ENST00000304895	ENST00000317551		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000304895	ENST00000422340		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-intron	ENST00000304895	ENST00000547852		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000421103	ENST00000317551		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000421103	ENST00000422340		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-intron	ENST00000421103	ENST00000547852		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000345660	ENST00000317551		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000345660	ENST00000422340		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-intron	ENST00000345660	ENST00000547852		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000476486	ENST00000317551		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000476486	ENST00000422340		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-intron	ENST00000476486	ENST00000547852		ChiTaRS3.1			CV328677	GUSB	chr7	65432745	-	CERS5	chr12	50529754	+
intron-3CDS	ENST00000373232	ENST00000379802		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000373232	ENST00000418664		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000608321	ENST00000379802		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000608321	ENST00000418664		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000495346	ENST00000379802		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000495346	ENST00000418664		ChiTaRS3.1			AW578437	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
Frame-shit	ENST00000369981	ENST00000369981		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369981	ENST00000369985		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369981	ENST00000369977		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369981	ENST00000369975		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
5CDS-3UTR	ENST00000369981	ENST00000462633		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369985	ENST00000369981		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369985	ENST00000369985		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369985	ENST00000369977		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369985	ENST00000369975		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
5CDS-3UTR	ENST00000369985	ENST00000462633		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369977	ENST00000369981		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369977	ENST00000369985		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369977	ENST00000369977		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369977	ENST00000369975		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
5CDS-3UTR	ENST00000369977	ENST00000462633		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369975	ENST00000369981		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369975	ENST00000369985		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369975	ENST00000369977		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
Frame-shit	ENST00000369975	ENST00000369975		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
5CDS-3UTR	ENST00000369975	ENST00000462633		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3CDS	ENST00000462633	ENST00000369981		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3CDS	ENST00000462633	ENST00000369985		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3CDS	ENST00000462633	ENST00000369977		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3CDS	ENST00000462633	ENST00000369975		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3UTR	ENST00000462633	ENST00000462633		ChiTaRS3.1			CA430517	MYO6	chr6	76596657	-	MYO6	chr6	76589571	+
intron-3UTR	ENST00000229195	ENST00000411641		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000229195	ENST00000273784		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000418359	ENST00000411641		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000418359	ENST00000273784		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000548230	ENST00000411641		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000548230	ENST00000273784		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000551483	ENST00000411641		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
intron-3UTR	ENST00000551483	ENST00000273784		ChiTaRS3.1			AF130057	CNOT2	chr12	70715461	-	AHSG	chr3	186338832	+
5CDS-3UTR	ENST00000223061	ENST00000418948		ChiTaRS3.1			AI378967	PCOLCE	chr7	100205383	-	SEMA3B	chr3	50314206	-
intron-3UTR	ENST00000496269	ENST00000418948		ChiTaRS3.1			AI378967	PCOLCE	chr7	100205383	-	SEMA3B	chr3	50314206	-
intron-intron	ENST00000316403	ENST00000282878		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000316403	ENST00000507977		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000546343	ENST00000282878		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000546343	ENST00000507977		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000560366	ENST00000282878		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000560366	ENST00000507977		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000405140	ENST00000282878		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000405140	ENST00000507977		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000523500	ENST00000282878		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000523500	ENST00000507977		ChiTaRS3.1			AW262717	CLU	chr8	27455621	+	RAB3C	chr5	58075784	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807957	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-3CDS	ENST00000369037	ENST00000369037		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000369037	ENST00000453874		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000369037	ENST00000369031		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-3CDS	ENST00000453874	ENST00000369037		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000453874	ENST00000453874		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000453874	ENST00000369031		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-3CDS	ENST00000369031	ENST00000369037		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000369031	ENST00000453874		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000369031	ENST00000369031		ChiTaRS3.1			AI827607	PDSS2	chr6	107531709	+	PDSS2	chr6	107533369	-
intron-intron	ENST00000439944	ENST00000514251		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000321464		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000441582		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000439944	ENST00000512327		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000514251		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000321464		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000441582		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000347624	ENST00000512327		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000514251		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000321464		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000441582		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-intron	ENST00000428839	ENST00000512327		ChiTaRS3.1			BE072897	LRRC15	chr3	194076510	-	ZBTB38	chr3	141137645	+
intron-3UTR	ENST00000483612	ENST00000377658		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000483612	ENST00000377663		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000467612		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000463043		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377658		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377663		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000467612		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000463043		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377658		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377663		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000467612		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000463043		ChiTaRS3.1			AI658827	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000340811	ENST00000261716		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
intron-intron	ENST00000340811	ENST00000536202		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
intron-intron	ENST00000070846	ENST00000261716		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
intron-intron	ENST00000070846	ENST00000536202		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
intron-intron	ENST00000546741	ENST00000261716		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
intron-intron	ENST00000546741	ENST00000536202		ChiTaRS3.1			BF509237	PKP2	chr12	33046826	+	TAOK1	chr17	27867058	-
3UTR-3CDS	ENST00000285968	ENST00000285968		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
3UTR-intron	ENST00000285968	ENST00000440390		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
3UTR-intron	ENST00000285968	ENST00000489493		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-3CDS	ENST00000440390	ENST00000285968		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-intron	ENST00000440390	ENST00000440390		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-intron	ENST00000440390	ENST00000489493		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-3CDS	ENST00000489493	ENST00000285968		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-intron	ENST00000489493	ENST00000440390		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-intron	ENST00000489493	ENST00000489493		ChiTaRS3.1			CA313337	NUP205	chr7	135333402	-	NUP205	chr7	135333164	+
intron-3CDS	ENST00000232458	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000232458	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000232458	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000232458	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000232458	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000232458	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000392692	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000427830	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000417960	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
5UTR-3CDS	ENST00000441497	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000232458		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000392692		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000427830		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000417960		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000441497		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
intron-3CDS	ENST00000540509	ENST00000540509		ChiTaRS3.1			BQ028167	ECT2	chr3	172472298	-	ECT2	chr3	172525675	-
In-frame	ENST00000233146	ENST00000233146		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000233146	ENST00000543555		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000233146	ENST00000406134		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
5CDS-intron	ENST00000233146	ENST00000461394		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000543555	ENST00000233146		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000543555	ENST00000543555		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000543555	ENST00000406134		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
5CDS-intron	ENST00000543555	ENST00000461394		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000406134	ENST00000233146		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000406134	ENST00000543555		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
In-frame	ENST00000406134	ENST00000406134		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
5CDS-intron	ENST00000406134	ENST00000461394		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
intron-3CDS	ENST00000461394	ENST00000233146		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
intron-3CDS	ENST00000461394	ENST00000543555		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
intron-3CDS	ENST00000461394	ENST00000406134		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
intron-intron	ENST00000461394	ENST00000461394		ChiTaRS3.1			CN338457	MSH2	chr2	47639680	-	MSH2	chr2	47641507	+
intron-intron	ENST00000399262	ENST00000361937		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000399262	ENST00000401393		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000399262	ENST00000561244		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000402544	ENST00000361937		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000402544	ENST00000401393		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000402544	ENST00000561244		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000399251	ENST00000361937		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000399251	ENST00000401393		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000399251	ENST00000561244		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000542921	ENST00000361937		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000542921	ENST00000401393		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000542921	ENST00000561244		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000489372	ENST00000361937		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000489372	ENST00000401393		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000489372	ENST00000561244		ChiTaRS3.1			BF370837	JMJD1C	chr10	65079531	+	INO80	chr15	41319205	-
intron-intron	ENST00000412278	ENST00000514361		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000503028		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000310092		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000396053		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000408993		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000578778		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000483858		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000398692		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000506523		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000530235		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000532968		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000409406		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000412278	ENST00000515838		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000514361		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000503028		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000310092		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000396053		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000408993		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000578778		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000483858		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000398692		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000506523		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000530235		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000532968		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000409406		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000511114	ENST00000515838		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000514361		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000503028		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000310092		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000396053		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000408993		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000578778		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000483858		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000398692		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000506523		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000530235		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000532968		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000409406		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-intron	ENST00000500635	ENST00000515838		ChiTaRS3.1			BE154847	RBM14-RBM4	chr11	66412741	-	RBM4	chr11	66430382	+
intron-3UTR	ENST00000409699	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000409699	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000360698	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000360698	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000422354	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000422354	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000395625	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000395625	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000288745	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000288745	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000478721	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000478721	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000395614	ENST00000321562		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
intron-3UTR	ENST00000395614	ENST00000544340		ChiTaRS3.1			AA451977	MEGF11	chr15	66190311	+	FKBP10	chr17	39979137	+
3UTR-intron	ENST00000228955	ENST00000307635		ChiTaRS3.1			BC016767	GTF2H3	chr12	124145334	+	ZNF556	chr19	2874142	-
3UTR-intron	ENST00000228955	ENST00000586426		ChiTaRS3.1			BC016767	GTF2H3	chr12	124145334	+	ZNF556	chr19	2874142	-
3UTR-intron	ENST00000543341	ENST00000307635		ChiTaRS3.1			BC016767	GTF2H3	chr12	124145334	+	ZNF556	chr19	2874142	-
3UTR-intron	ENST00000543341	ENST00000586426		ChiTaRS3.1			BC016767	GTF2H3	chr12	124145334	+	ZNF556	chr19	2874142	-
intron-intron	ENST00000529261	ENST00000529261		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000529261	ENST00000278353		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000529261	ENST00000395700		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000278353	ENST00000529261		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000278353	ENST00000278353		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000278353	ENST00000395700		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000395700	ENST00000529261		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000395700	ENST00000278353		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
intron-intron	ENST00000395700	ENST00000395700		ChiTaRS3.1			CB218117	HSD17B12	chr11	43714781	-	HSD17B12	chr11	43716753	-
3UTR-5UTR	ENST00000259254	ENST00000259254		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000259254	ENST00000356887		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000259254	ENST00000409836		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-3UTR	ENST00000259254	ENST00000464053		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000356887	ENST00000259254		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000356887	ENST00000356887		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000356887	ENST00000409836		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-3UTR	ENST00000356887	ENST00000464053		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000409836	ENST00000259254		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000409836	ENST00000356887		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000409836	ENST00000409836		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-3UTR	ENST00000409836	ENST00000464053		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000464053	ENST00000259254		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000464053	ENST00000356887		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-5UTR	ENST00000464053	ENST00000409836		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
3UTR-3UTR	ENST00000464053	ENST00000464053		ChiTaRS3.1			BG431197	GYPC	chr2	127453995	+	GYPC	chr2	127413824	+
intron-3CDS	ENST00000546455	ENST00000005386		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000546455	ENST00000548211		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000546455	ENST00000432584		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000546455	ENST00000380650		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-3CDS	ENST00000432328	ENST00000005386		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000432328	ENST00000548211		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000432328	ENST00000432584		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
intron-intron	ENST00000432328	ENST00000380650		ChiTaRS3.1			AI133217	PCED1B	chr12	47571908	+	RPAP3	chr12	48096572	-
3UTR-3UTR	ENST00000328656	ENST00000328656		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000328656	ENST00000398938		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000328656	ENST00000398932		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000328656	ENST00000398930		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000328656	ENST00000398934		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398938	ENST00000328656		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-intron	ENST00000398938	ENST00000398938		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-intron	ENST00000398938	ENST00000398932		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398938	ENST00000398930		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398938	ENST00000398934		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398932	ENST00000328656		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-intron	ENST00000398932	ENST00000398938		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-intron	ENST00000398932	ENST00000398932		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398932	ENST00000398930		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-3UTR	ENST00000398932	ENST00000398934		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398930	ENST00000328656		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000398930	ENST00000398938		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000398930	ENST00000398932		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398930	ENST00000398930		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398930	ENST00000398934		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398934	ENST00000328656		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000398934	ENST00000398938		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-intron	ENST00000398934	ENST00000398932		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398934	ENST00000398930		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
3UTR-3UTR	ENST00000398934	ENST00000398934		ChiTaRS3.1			BE182927	KCNJ15	chr21	39673456	-	KCNJ15	chr21	39673504	+
intron-intron	ENST00000445552	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000445552	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000337845	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000329240	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000573185	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000570550	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000336125	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549904	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000550273	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000549665	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000376637		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000400895		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000491346		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000376629		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000376627		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000314340		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000452018		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000553155	ENST00000510878		ChiTaRS3.1			BQ335717	ARL17A	chr17	751508	-	AGTRAP	chr1	11803178	-
intron-intron	ENST00000399161	ENST00000332142		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000399161	ENST00000328032		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000399161	ENST00000477019		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000428368	ENST00000332142		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000428368	ENST00000328032		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000428368	ENST00000477019		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000407844	ENST00000332142		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000407844	ENST00000328032		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000407844	ENST00000477019		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000471668	ENST00000332142		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000471668	ENST00000328032		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000471668	ENST00000477019		ChiTaRS3.1			T05757	MYT1L	chr2	2159886	-	KCNH7	chr2	163535138	+
intron-intron	ENST00000496972	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000496972	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000496972	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000405222	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000405222	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000405222	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407661	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407661	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407661	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000406818	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000406818	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000406818	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407038	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407038	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407038	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000404103	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000404103	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000404103	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407186	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407186	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000407186	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000288642	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000288642	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000288642	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000545439	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000545439	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000545439	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000472690	ENST00000343742		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000472690	ENST00000298910		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
intron-intron	ENST00000472690	ENST00000481256		ChiTaRS3.1			BE175957	DTNB	chr2	25821606	+	LRRK2	chr12	40759926	-
3UTR-3UTR	ENST00000344147	ENST00000344147		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000344147	ENST00000479629		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000344147	ENST00000373714		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000344147	ENST00000546109		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000344147	ENST00000422613		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000479629	ENST00000344147		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-intron	ENST00000479629	ENST00000479629		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000479629	ENST00000373714		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-intron	ENST00000479629	ENST00000546109		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000479629	ENST00000422613		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000373714	ENST00000344147		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000373714	ENST00000479629		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000373714	ENST00000373714		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000373714	ENST00000546109		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000373714	ENST00000422613		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000546109	ENST00000344147		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-intron	ENST00000546109	ENST00000479629		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000546109	ENST00000373714		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-intron	ENST00000546109	ENST00000546109		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3UTR	ENST00000546109	ENST00000422613		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000422613	ENST00000344147		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000422613	ENST00000479629		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000422613	ENST00000373714		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-intron	ENST00000422613	ENST00000546109		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
3UTR-3UTR	ENST00000422613	ENST00000422613		ChiTaRS3.1			BU618487	ZCCHC17	chr1	31837287	-	ZCCHC17	chr1	31837218	+
intron-3CDS	ENST00000289371	ENST00000289371		ChiTaRS3.1			AA687907	EIF5B	chr2	100006182	-	EIF5B	chr2	99999332	+
intron-intron	ENST00000519824	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519824	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522746	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000523509	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000401979	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519110	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522250	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000517654	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000519540	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000522941	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000519824		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000522746		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000523509		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000401979		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000519110		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000522250		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000517654		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000519540		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000522941		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
intron-intron	ENST00000518879	ENST00000518879		ChiTaRS3.1			CA311497	FAM49B	chr8	130980170	+	FAM49B	chr8	130980372	-
3UTR-3CDS	ENST00000373068	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373068	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373068	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000373068	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373069	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373069	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373069	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000373069	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000432073	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000432073	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000432073	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000432073	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373066	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373066	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373066	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000373066	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373064	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373064	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000373064	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000373064	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000433501	ENST00000398454		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000433501	ENST00000359874		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-3CDS	ENST00000433501	ENST00000256084		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
3UTR-intron	ENST00000433501	ENST00000476608		ChiTaRS3.1			AW084877	SLC25A25	chr9	130871118	+	SPINK5	chr5	147495959	+
Frame-shit	ENST00000340648	ENST00000303635		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
Frame-shit	ENST00000340648	ENST00000439411		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
5CDS-3UTR	ENST00000340648	ENST00000476163		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
5CDS-3UTR	ENST00000340648	ENST00000557126		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
5CDS-3UTR	ENST00000340648	ENST00000473578		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
5CDS-3UTR	ENST00000340648	ENST00000467404		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
5CDS-intron	ENST00000340648	ENST00000476864		ChiTaRS3.1			BI861937	RRP1B	chr21	45094569	+	CAMTA1	chr1	6845608	+
intron-3CDS	ENST00000359087	ENST00000359087		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000359087	ENST00000290810		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000359087	ENST00000379463		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000359087	ENST00000394074		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-intron	ENST00000359087	ENST00000564040		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000290810	ENST00000359087		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000290810	ENST00000290810		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000290810	ENST00000379463		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000290810	ENST00000394074		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-intron	ENST00000290810	ENST00000564040		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000379463	ENST00000359087		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000379463	ENST00000290810		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000379463	ENST00000379463		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000379463	ENST00000394074		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-intron	ENST00000379463	ENST00000564040		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000394074	ENST00000359087		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000394074	ENST00000290810		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000394074	ENST00000379463		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000394074	ENST00000394074		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-intron	ENST00000394074	ENST00000564040		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000564040	ENST00000359087		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000564040	ENST00000290810		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000564040	ENST00000379463		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3CDS	ENST00000564040	ENST00000394074		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-intron	ENST00000564040	ENST00000564040		ChiTaRS3.1			BI042477	NAE1	chr16	66850555	-	NAE1	chr16	66852462	+
intron-3UTR	ENST00000370489	ENST00000267101		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-intron	ENST00000370489	ENST00000450146		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-intron	ENST00000370489	ENST00000415288		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-intron	ENST00000370489	ENST00000553131		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-intron	ENST00000370489	ENST00000411731		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-3UTR	ENST00000370489	ENST00000549832		ChiTaRS3.1			AW994887	ENTPD7	chr10	101466377	-	ERBB3	chr12	56496798	+
intron-intron	ENST00000504387	ENST00000523094		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000504387	ENST00000530742		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000504387	ENST00000296951		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000504387	ENST00000411809		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000504387	ENST00000523908		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379446	ENST00000523094		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379446	ENST00000530742		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379446	ENST00000296951		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379446	ENST00000411809		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379446	ENST00000523908		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379433	ENST00000523094		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379433	ENST00000530742		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379433	ENST00000296951		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379433	ENST00000411809		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000379433	ENST00000523908		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000508800	ENST00000523094		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000508800	ENST00000530742		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000508800	ENST00000296951		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000508800	ENST00000411809		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-intron	ENST00000508800	ENST00000523908		ChiTaRS3.1			AW858887	NEDD9	chr6	11186909	+	CLINT1	chr5	157263679	-
intron-3CDS	ENST00000513032	ENST00000320580		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-intron	ENST00000513032	ENST00000529757		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-intron	ENST00000513032	ENST00000524815		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-3CDS	ENST00000303965	ENST00000320580		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-intron	ENST00000303965	ENST00000529757		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-intron	ENST00000303965	ENST00000524815		ChiTaRS3.1			BG987597	ARAP2	chr4	36066586	+	PACS1	chr11	65983613	+
intron-3CDS	ENST00000229238	ENST00000229238		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000229238	ENST00000543164		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000229238	ENST00000543703		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-3CDS	ENST00000543164	ENST00000229238		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000543164	ENST00000543164		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000543164	ENST00000543703		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-3CDS	ENST00000543703	ENST00000229238		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000543703	ENST00000543164		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-5UTR	ENST00000543703	ENST00000543703		ChiTaRS3.1			CA313587	MRPL51	chr12	6601453	+	MRPL51	chr12	6601595	-
intron-intron	ENST00000401884	ENST00000401884		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000401884	ENST00000342631		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000401884	ENST00000405547		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000401884	ENST00000310397		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000401884	ENST00000469006		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000342631	ENST00000401884		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000342631	ENST00000342631		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000342631	ENST00000405547		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000342631	ENST00000310397		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000342631	ENST00000469006		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000405547	ENST00000401884		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000405547	ENST00000342631		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000405547	ENST00000405547		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000405547	ENST00000310397		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000405547	ENST00000469006		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000310397	ENST00000401884		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000310397	ENST00000342631		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000310397	ENST00000405547		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000310397	ENST00000310397		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000310397	ENST00000469006		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000469006	ENST00000401884		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000469006	ENST00000342631		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000469006	ENST00000405547		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000469006	ENST00000310397		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000469006	ENST00000469006		ChiTaRS3.1			BE843547	SNED1	chr2	242027703	+	SNED1	chr2	242027589	-
intron-intron	ENST00000567020	ENST00000567020		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000567020	ENST00000293970		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000567020	ENST00000434757		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000293970	ENST00000567020		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000293970	ENST00000293970		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000293970	ENST00000434757		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000434757	ENST00000567020		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000434757	ENST00000293970		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000434757	ENST00000434757		ChiTaRS3.1			BU608037	TBC1D24	chr16	2570116	-	TBC1D24	chr16	2569965	+
intron-intron	ENST00000367545	ENST00000367545		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000367545	ENST00000367526		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000367545	ENST00000480333		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000367526	ENST00000367545		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000367526	ENST00000367526		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000367526	ENST00000480333		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000480333	ENST00000367545		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000480333	ENST00000367526		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000480333	ENST00000480333		ChiTaRS3.1			BQ022847	UTRN	chr6	145022307	-	UTRN	chr6	145025824	-
intron-intron	ENST00000368194	ENST00000347401		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000353578		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000295550		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000472056		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000409809		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000346358		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000392004		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000392003		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000368194	ENST00000473258		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000347401		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000353578		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000295550		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000472056		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000409809		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000346358		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000392004		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000392003		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000487682	ENST00000473258		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000347401		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000353578		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000295550		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000472056		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000409809		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000346358		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000392004		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000392003		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000361409	ENST00000473258		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000347401		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000353578		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000295550		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000472056		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000409809		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000346358		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000392004		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000392003		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-intron	ENST00000315174	ENST00000473258		ChiTaRS3.1			BE696037	ARHGEF11	chr1	157015181	+	COL6A3	chr2	238267677	+
intron-3UTR	ENST00000300571	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000300571	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000300571	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000300571	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000300571	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000300571	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569102	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569102	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569102	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569102	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569102	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569102	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000535671	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000535671	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000535671	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000535671	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000535671	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000535671	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569479	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569479	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569479	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569479	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569479	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569479	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000537135	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000537135	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000537135	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000537135	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000537135	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000537135	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569847	ENST00000300571		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569847	ENST00000569102		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569847	ENST00000535671		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-3UTR	ENST00000569847	ENST00000569479		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569847	ENST00000537135		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
intron-intron	ENST00000569847	ENST00000569847		ChiTaRS3.1			BP199967	GPRC5B	chr16	19870947	-	GPRC5B	chr16	19871629	-
5CDS-5UTR	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-5UTR	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
5CDS-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-5UTR	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-5UTR	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-5UTR	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-5UTR	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE933287	SMARCB1	chr22	24175848	+	SMARCB1	chr22	24129341	+
intron-intron	ENST00000450793	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000450793	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000450793	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000538141	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000538141	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000380180	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000380180	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000318007	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000318007	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-3UTR	ENST00000437932	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000437932	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-3UTR	ENST00000317968	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000317968	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-3UTR	ENST00000542407	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000542407	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000508216	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000508216	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-3UTR	ENST00000514743	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
5CDS-intron	ENST00000514743	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-3UTR	ENST00000380176	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
3UTR-intron	ENST00000380176	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000359265	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000359265	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000512274	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000512274	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000450793		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000538141		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000380180		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000318007		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000437932		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000317968		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000542407		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000508216		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000514743		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-3UTR	ENST00000504489	ENST00000380176		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000359265		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000512274		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000504489	ENST00000504489		ChiTaRS3.1			AA568207	PDLIM5	chr4	95583689	+	PDLIM5	chr4	95585185	-
intron-intron	ENST00000545180	ENST00000545180		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000545180	ENST00000592299		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000545180	ENST00000590959		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000545180	ENST00000323374		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000545180	ENST00000392496		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000592299	ENST00000545180		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000592299	ENST00000592299		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000592299	ENST00000590959		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000592299	ENST00000323374		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000592299	ENST00000392496		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000590959	ENST00000545180		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000590959	ENST00000592299		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000590959	ENST00000590959		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000590959	ENST00000323374		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000590959	ENST00000392496		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000323374	ENST00000545180		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000323374	ENST00000592299		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000323374	ENST00000590959		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000323374	ENST00000323374		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000323374	ENST00000392496		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000392496	ENST00000545180		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000392496	ENST00000592299		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000392496	ENST00000590959		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000392496	ENST00000323374		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-intron	ENST00000392496	ENST00000392496		ChiTaRS3.1			CA426947	SPHK1	chr17	74377979	+	SPHK1	chr17	74377210	+
intron-3CDS	ENST00000238616	ENST00000238616		ChiTaRS3.1			CB052077	NEK9	chr14	75559597	+	NEK9	chr14	75558032	+
intron-intron	ENST00000238616	ENST00000555763		ChiTaRS3.1			CB052077	NEK9	chr14	75559597	+	NEK9	chr14	75558032	+
intron-3CDS	ENST00000555763	ENST00000238616		ChiTaRS3.1			CB052077	NEK9	chr14	75559597	+	NEK9	chr14	75558032	+
intron-intron	ENST00000555763	ENST00000555763		ChiTaRS3.1			CB052077	NEK9	chr14	75559597	+	NEK9	chr14	75558032	+
intron-3UTR	ENST00000374847	ENST00000374847		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374847	ENST00000374848		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374847	ENST00000374851		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-intron	ENST00000374847	ENST00000482920		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374848	ENST00000374847		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374848	ENST00000374848		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374848	ENST00000374851		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-intron	ENST00000374848	ENST00000482920		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374851	ENST00000374847		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374851	ENST00000374848		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000374851	ENST00000374851		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-intron	ENST00000374851	ENST00000482920		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000482920	ENST00000374847		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000482920	ENST00000374848		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3UTR	ENST00000482920	ENST00000374851		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-intron	ENST00000482920	ENST00000482920		ChiTaRS3.1			BF110047	TMEM246	chr9	104238187	+	TMEM246	chr9	104238140	-
intron-3CDS	ENST00000543245	ENST00000543245		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000543245	ENST00000356839		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000543245	ENST00000350303		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3UTR	ENST00000543245	ENST00000581562		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000356839	ENST00000543245		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000356839	ENST00000356839		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000356839	ENST00000350303		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3UTR	ENST00000356839	ENST00000581562		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000350303	ENST00000543245		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000350303	ENST00000356839		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000350303	ENST00000350303		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3UTR	ENST00000350303	ENST00000581562		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000581562	ENST00000543245		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000581562	ENST00000356839		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3CDS	ENST00000581562	ENST00000350303		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-3UTR	ENST00000581562	ENST00000581562		ChiTaRS3.1			BI013807	ACADVL	chr17	7124699	-	ACADVL	chr17	7124357	+
intron-intron	ENST00000376460	ENST00000456860		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000376460	ENST00000322282		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000376460	ENST00000529750		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000376460	ENST00000450171		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000339416	ENST00000456860		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000339416	ENST00000322282		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000339416	ENST00000529750		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000339416	ENST00000450171		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000448493	ENST00000456860		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000448493	ENST00000322282		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000448493	ENST00000529750		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000448493	ENST00000450171		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000442173	ENST00000456860		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000442173	ENST00000322282		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000442173	ENST00000529750		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000442173	ENST00000450171		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000461998	ENST00000456860		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000461998	ENST00000322282		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000461998	ENST00000529750		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000461998	ENST00000450171		ChiTaRS3.1			M78837	DOCK9	chr13	99560066	+	GRAMD1B	chr11	123427003	+
intron-intron	ENST00000302279	ENST00000302279		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000302279	ENST00000342116		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000302279	ENST00000524546		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000302279	ENST00000529687		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000342116	ENST00000302279		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000342116	ENST00000342116		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000342116	ENST00000524546		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000342116	ENST00000529687		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000524546	ENST00000302279		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000524546	ENST00000342116		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000524546	ENST00000524546		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000524546	ENST00000529687		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000529687	ENST00000302279		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000529687	ENST00000342116		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000529687	ENST00000524546		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
intron-intron	ENST00000529687	ENST00000529687		ChiTaRS3.1			CA868587	FNTA	chr8	42936921	-	FNTA	chr8	42937978	-
3UTR-intron	ENST00000375442	ENST00000400546		ChiTaRS3.1			BF947917	TSPYL2	chrX	53117351	+	NCAM2	chr21	22472560	-
3UTR-intron	ENST00000375442	ENST00000284894		ChiTaRS3.1			BF947917	TSPYL2	chrX	53117351	+	NCAM2	chr21	22472560	-
3UTR-intron	ENST00000375442	ENST00000535285		ChiTaRS3.1			BF947917	TSPYL2	chrX	53117351	+	NCAM2	chr21	22472560	-
3UTR-intron	ENST00000375442	ENST00000486367		ChiTaRS3.1			BF947917	TSPYL2	chrX	53117351	+	NCAM2	chr21	22472560	-
3UTR-intron	ENST00000335325	ENST00000409718		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000358677		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000409988		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000409385		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000451764		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000360760		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000409140		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000409755		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000409151		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000335325	ENST00000460095		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409718		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000358677		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409988		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409385		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000451764		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000360760		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409140		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409755		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000409151		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000320619	ENST00000460095		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409718		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000358677		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409988		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409385		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000451764		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000360760		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409140		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409755		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000409151		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000566250	ENST00000460095		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409718		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000358677		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409988		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409385		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000451764		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000360760		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409140		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409755		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000409151		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
3UTR-intron	ENST00000567962	ENST00000460095		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409718		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000358677		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409988		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409385		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000451764		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000360760		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409140		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409755		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000409151		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
intron-intron	ENST00000564320	ENST00000460095		ChiTaRS3.1			BF064167	ZNRF1	chr16	75141751	-	SPATS2L	chr2	201297180	-
Frame-shit	ENST00000220763	ENST00000220763		ChiTaRS3.1			BI907577	CPQ	chr8	98078325	-	CPQ	chr8	98078392	+
5CDS-3UTR	ENST00000220763	ENST00000529551		ChiTaRS3.1			BI907577	CPQ	chr8	98078325	-	CPQ	chr8	98078392	+
3UTR-3CDS	ENST00000529551	ENST00000220763		ChiTaRS3.1			BI907577	CPQ	chr8	98078325	-	CPQ	chr8	98078392	+
3UTR-3UTR	ENST00000529551	ENST00000529551		ChiTaRS3.1			BI907577	CPQ	chr8	98078325	-	CPQ	chr8	98078392	+
intron-intron	ENST00000455809	ENST00000237247		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000371039		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000371035		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000468286		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000371036		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000371037		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000455809	ENST00000435165		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000237247		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000371039		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000371035		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000468286		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000371036		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000371037		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000273037	ENST00000435165		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000237247		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000371039		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000371035		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000468286		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000371036		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000371037		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000444133	ENST00000435165		ChiTaRS3.1			AW838547	TAMM41	chr3	11852837	+	SGIP1	chr1	67011645	-
intron-intron	ENST00000344686	ENST00000591263		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000588504		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000590100		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000585346		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000592422		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000588698		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000588160		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-3UTR	ENST00000344686	ENST00000585780		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000586450		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-intron	ENST00000344686	ENST00000585351		ChiTaRS3.1			BQ375357	MAP3K14	chr17	43364700	+	MAP3K14-AS1	chr17	43340520	+
intron-3UTR	ENST00000437099	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000437099	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000437099	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000323816	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000323816	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000323816	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000432992	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000432992	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000432992	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000540214	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000540214	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000540214	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000585266	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000585266	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000585266	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000580865	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000580865	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000580865	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000583882	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000583882	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000583882	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000542249	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000542249	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000542249	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000396115	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000396115	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000396115	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000579158	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000579158	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000579158	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000578655	ENST00000437099		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-3UTR	ENST00000578655	ENST00000323816		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000432992		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000540214		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000585266		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000580865		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000583882		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000542249		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000396115		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000579158		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000578655	ENST00000578655		ChiTaRS3.1			AA323217	GAS7	chr17	9814541	-	GAS7	chr17	9814942	-
intron-intron	ENST00000458591	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380338		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000355930		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000429426		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000475957		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380321		ChiTaRS3.1			BG195777	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000356082	ENST00000511250		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000356082	ENST00000308497		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000356082	ENST00000438269		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000391911	ENST00000511250		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000391911	ENST00000308497		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000391911	ENST00000438269		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000367030	ENST00000511250		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000367030	ENST00000308497		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000367030	ENST00000438269		ChiTaRS3.1			AW379287	LAMB3	chr1	209789954	-	STOX2	chr4	184912322	-
intron-intron	ENST00000331817	ENST00000331817		ChiTaRS3.1			BF750197	KRT7	chr12	52629319	+	KRT7	chr12	52629448	-
intron-intron	ENST00000331817	ENST00000552322		ChiTaRS3.1			BF750197	KRT7	chr12	52629319	+	KRT7	chr12	52629448	-
intron-intron	ENST00000552322	ENST00000331817		ChiTaRS3.1			BF750197	KRT7	chr12	52629319	+	KRT7	chr12	52629448	-
intron-intron	ENST00000552322	ENST00000552322		ChiTaRS3.1			BF750197	KRT7	chr12	52629319	+	KRT7	chr12	52629448	-
In-frame	ENST00000295897	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000295897	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000295897	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000295897	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000295897	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
5CDS-intron	ENST00000295897	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000415165	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000415165	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000415165	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000415165	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000415165	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
5CDS-intron	ENST00000415165	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000503124	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000503124	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000503124	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000503124	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000503124	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
5CDS-intron	ENST00000503124	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000509063	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000509063	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000509063	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000509063	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000509063	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
5CDS-intron	ENST00000509063	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000401494	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000401494	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000401494	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000401494	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
In-frame	ENST00000401494	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
5CDS-intron	ENST00000401494	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-3CDS	ENST00000505649	ENST00000295897		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-3CDS	ENST00000505649	ENST00000415165		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-3CDS	ENST00000505649	ENST00000503124		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-3CDS	ENST00000505649	ENST00000509063		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-3CDS	ENST00000505649	ENST00000401494		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
3UTR-intron	ENST00000505649	ENST00000505649		ChiTaRS3.1			AI064877	ALB	chr4	74282020	-	ALB	chr4	74283298	+
intron-intron	ENST00000380003	ENST00000282570		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
intron-intron	ENST00000380003	ENST00000468386		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
intron-intron	ENST00000488117	ENST00000282570		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
intron-intron	ENST00000488117	ENST00000468386		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
intron-intron	ENST00000379997	ENST00000282570		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
intron-intron	ENST00000379997	ENST00000468386		ChiTaRS3.1			BF811117	C9orf72	chr9	27566974	+	GMCL1	chr2	70067869	-
3UTR-intron	ENST00000261254	ENST00000396299		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-3UTR	ENST00000261254	ENST00000357727		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-intron	ENST00000261254	ENST00000396300		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-intron	ENST00000261254	ENST00000409603		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-intron	ENST00000261254	ENST00000396298		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-intron	ENST00000261254	ENST00000482692		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-intron	ENST00000541542	ENST00000396299		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-3UTR	ENST00000541542	ENST00000357727		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-intron	ENST00000541542	ENST00000396300		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-intron	ENST00000541542	ENST00000409603		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-intron	ENST00000541542	ENST00000396298		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
intron-intron	ENST00000541542	ENST00000482692		ChiTaRS3.1			BF920997	CCND2	chr12	4410847	-	CREB5	chr7	28861423	-
3UTR-intron	ENST00000374580	ENST00000375110		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374580	ENST00000319778		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374580	ENST00000263062		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374580	ENST00000480402		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374574	ENST00000375110		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374574	ENST00000319778		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374574	ENST00000263062		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
3UTR-intron	ENST00000374574	ENST00000480402		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
intron-intron	ENST00000479069	ENST00000375110		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
intron-intron	ENST00000479069	ENST00000319778		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
intron-intron	ENST00000479069	ENST00000263062		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
intron-intron	ENST00000479069	ENST00000480402		ChiTaRS3.1			CB052857	BMPR2	chr2	203427718	+	EPC1	chr10	32598519	-
intron-intron	ENST00000272321	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000272321	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409199	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409120	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000398544	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409562	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000298834		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000426438		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000314845		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000533727		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000534300		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000458649		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000528950		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000409835	ENST00000529963		ChiTaRS3.1			BF933577	WDPCP	chr2	63530850	+	AMBRA1	chr11	46542555	+
intron-intron	ENST00000380121	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000380121	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000504114	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000504114	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000357505	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000357505	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000399396	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000399396	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000446957	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000446957	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000267068	ENST00000286657		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-intron	ENST00000267068	ENST00000505193		ChiTaRS3.1			BI014307	N4BP2L2	chr13	33101671	+	ADAMTS3	chr4	73284951	+
intron-3UTR	ENST00000346145	ENST00000317897		ChiTaRS3.1			BQ689257	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000349607	ENST00000317897		ChiTaRS3.1			BQ689257	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000463781	ENST00000317897		ChiTaRS3.1			BQ689257	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000475231	ENST00000317897		ChiTaRS3.1			BQ689257	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000478685	ENST00000317897		ChiTaRS3.1			BQ689257	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-intron	ENST00000348428	ENST00000348428		ChiTaRS3.1			BF748997	MALT1	chr18	56412221	-	MALT1	chr18	56412025	+
intron-intron	ENST00000348428	ENST00000345724		ChiTaRS3.1			BF748997	MALT1	chr18	56412221	-	MALT1	chr18	56412025	+
intron-intron	ENST00000345724	ENST00000348428		ChiTaRS3.1			BF748997	MALT1	chr18	56412221	-	MALT1	chr18	56412025	+
intron-intron	ENST00000345724	ENST00000345724		ChiTaRS3.1			BF748997	MALT1	chr18	56412221	-	MALT1	chr18	56412025	+
intron-3CDS	ENST00000563679	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000563679	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000563679	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000563679	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000563679	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000325823	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000325823	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000325823	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000325823	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000325823	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000447912	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000447912	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000447912	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000447912	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000447912	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000535621	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000535621	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000535621	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000535621	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000535621	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000455313	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000455313	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000455313	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000455313	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000455313	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000396410	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000396410	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000396410	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000396410	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000396410	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000569715	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000569715	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000569715	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000569715	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000569715	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000450288	ENST00000394023		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000450288	ENST00000550164		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000450288	ENST00000347471		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-3CDS	ENST00000450288	ENST00000267064		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
intron-intron	ENST00000450288	ENST00000550859		ChiTaRS3.1			BC015697	PDXDC1	chr16	15141878	+	SMARCC2	chr12	56565097	-
3UTR-3UTR	ENST00000205402	ENST00000371989		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000205402	ENST00000485435		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000205402	ENST00000545297		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000205402	ENST00000467910		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000205402	ENST00000371991		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-3UTR	ENST00000537148	ENST00000371989		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000537148	ENST00000485435		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000537148	ENST00000545297		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000537148	ENST00000467910		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000537148	ENST00000371991		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-3UTR	ENST00000440410	ENST00000371989		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000440410	ENST00000485435		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000440410	ENST00000545297		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000440410	ENST00000467910		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000440410	ENST00000371991		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-3UTR	ENST00000437604	ENST00000371989		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000437604	ENST00000485435		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000437604	ENST00000545297		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000437604	ENST00000467910		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
3UTR-intron	ENST00000437604	ENST00000371991		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-3UTR	ENST00000494441	ENST00000371989		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000494441	ENST00000485435		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000494441	ENST00000545297		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000494441	ENST00000467910		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000494441	ENST00000371991		ChiTaRS3.1			BG952037	DLD	chr7	107560077	-	SURF4	chr9	136228391	+
intron-intron	ENST00000367142	ENST00000367142		ChiTaRS3.1			BE179417	NUCKS1	chr1	205712790	+	NUCKS1	chr1	205713422	-
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			BE179417	NUCKS1	chr1	205712790	+	NUCKS1	chr1	205713422	-
intron-intron	ENST00000464938	ENST00000367142		ChiTaRS3.1			BE179417	NUCKS1	chr1	205712790	+	NUCKS1	chr1	205713422	-
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			BE179417	NUCKS1	chr1	205712790	+	NUCKS1	chr1	205713422	-
intron-intron	ENST00000268154	ENST00000268154		ChiTaRS3.1			BF357387	ZNF710	chr15	90575001	-	ZNF710	chr15	90575110	+
intron-intron	ENST00000268154	ENST00000560908		ChiTaRS3.1			BF357387	ZNF710	chr15	90575001	-	ZNF710	chr15	90575110	+
intron-intron	ENST00000560908	ENST00000268154		ChiTaRS3.1			BF357387	ZNF710	chr15	90575001	-	ZNF710	chr15	90575110	+
intron-intron	ENST00000560908	ENST00000560908		ChiTaRS3.1			BF357387	ZNF710	chr15	90575001	-	ZNF710	chr15	90575110	+
intron-intron	ENST00000311275	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000311275	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000360911	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000458360	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000262975	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000471951	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000352431	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000396281	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000446994	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000536340	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000355972	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000540497	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000461685	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000372023	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000311275		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000360911		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000458360		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000262975		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000471951		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000352431		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000396281		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000446994		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000536340		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000355972		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000540497		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000461685		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000372023		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-intron	ENST00000468376	ENST00000468376		ChiTaRS3.1			BF086007	ZMYND8	chr20	45878184	+	ZMYND8	chr20	45874752	+
intron-3UTR	ENST00000238497	ENST00000273398		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000238497	ENST00000538620		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000238497	ENST00000461496		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-3UTR	ENST00000591519	ENST00000273398		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000591519	ENST00000538620		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000591519	ENST00000461496		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-3UTR	ENST00000591383	ENST00000273398		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000591383	ENST00000538620		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-intron	ENST00000591383	ENST00000461496		ChiTaRS3.1			AI827667	VPS4B	chr18	61057568	-	ATP6V1A	chr3	113529121	+
intron-3CDS	ENST00000224167	ENST00000324225		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-3CDS	ENST00000224167	ENST00000431081		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000224167	ENST00000530948		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000224167	ENST00000532062		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-3CDS	ENST00000371625	ENST00000324225		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-3CDS	ENST00000371625	ENST00000431081		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000371625	ENST00000530948		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000371625	ENST00000532062		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-3CDS	ENST00000460340	ENST00000324225		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-3CDS	ENST00000460340	ENST00000431081		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000460340	ENST00000530948		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
intron-intron	ENST00000460340	ENST00000532062		ChiTaRS3.1			EB387717	PTGDS	chr9	139872160	+	SIDT2	chr11	117052160	+
3UTR-3UTR	ENST00000296306	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000296306	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000296306	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000296306	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000296306	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000296306	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000296306	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000296306	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000296306	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000310340	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000310340	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000310340	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000310340	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000310340	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000310340	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000310340	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000310340	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000310340	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000453061	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000453061	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000453061	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000453061	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000453061	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000453061	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000453061	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000453061	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000453061	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000504346	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000504346	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000504346	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000504346	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000504346	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000504346	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000504346	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000504346	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000504346	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000383028	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000383028	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000383028	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000383028	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-3UTR	ENST00000383028	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000383028	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000383028	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000383028	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
3UTR-intron	ENST00000383028	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000536264	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000536264	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000536264	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000536264	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000536264	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000536264	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000536264	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000536264	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000536264	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000502311	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000502311	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000502311	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000502311	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000502311	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000502311	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000502311	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000502311	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000502311	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000503111	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000503111	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000503111	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000503111	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000503111	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000503111	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000503111	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000503111	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000503111	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000509768	ENST00000296306		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000509768	ENST00000310340		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000509768	ENST00000453061		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000509768	ENST00000504346		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-3UTR	ENST00000509768	ENST00000383028		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000509768	ENST00000536264		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000509768	ENST00000502311		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000509768	ENST00000503111		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000509768	ENST00000509768		ChiTaRS3.1			CA312347	PIGG	chr4	533164	-	PIGG	chr4	532939	+
intron-intron	ENST00000356352	ENST00000536719		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000356352	ENST00000251968		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000356352	ENST00000357193		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000356352	ENST00000543087		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000357604	ENST00000536719		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000357604	ENST00000251968		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000357604	ENST00000357193		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000357604	ENST00000543087		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000397053	ENST00000536719		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000397053	ENST00000251968		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000397053	ENST00000357193		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000397053	ENST00000543087		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000460569	ENST00000536719		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000460569	ENST00000251968		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000460569	ENST00000357193		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000460569	ENST00000543087		ChiTaRS3.1			BQ639957	UPF2	chr10	11962791	-	TSG101	chr11	18509519	-
intron-intron	ENST00000332624	ENST00000361111		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000332624	ENST00000359758		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000332624	ENST00000297498		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000332624	ENST00000458665		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000332624	ENST00000528168		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000332624	ENST00000398462		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000332624	ENST00000317900		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000430254	ENST00000361111		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000430254	ENST00000359758		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000430254	ENST00000297498		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000430254	ENST00000458665		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000430254	ENST00000528168		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000430254	ENST00000398462		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000430254	ENST00000317900		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000451703	ENST00000361111		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000451703	ENST00000359758		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000451703	ENST00000297498		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000451703	ENST00000458665		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000451703	ENST00000528168		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000451703	ENST00000398462		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-5UTR	ENST00000451703	ENST00000317900		ChiTaRS3.1			X67697	TRAK2	chr2	202244179	-	SPAG11B	chr8	7321062	-
intron-intron	ENST00000384756	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384756	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000364799	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384693	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000383926	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000516331	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384706	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000363981	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000384147	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000384756		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000364799		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000384693		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000383926		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000516331		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000384706		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000363981		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000384147		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000365607	ENST00000365607		ChiTaRS3.1			BF888107	SNHG1	chr11	62620593	+	SNHG1	chr11	62619957	-
intron-intron	ENST00000361339	ENST00000361339		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000426508		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000439987		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000361339		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000426508		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000439987		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000361339		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000426508		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000439987		ChiTaRS3.1			BF223207	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000378204	ENST00000378204		ChiTaRS3.1			AA868517	EXT1	chr8	118875219	-	EXT1	chr8	118875594	+
intron-3CDS	ENST00000255224	ENST00000308664		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000255224	ENST00000395494		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000255224	ENST00000539276		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000255224	ENST00000550248		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000255224	ENST00000552636		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000308664		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000395494		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000539276		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000586678	ENST00000550248		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000586678	ENST00000552636		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000308664		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000395494		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000539276		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000590752	ENST00000550248		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000590752	ENST00000552636		ChiTaRS3.1			DA389857	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
In-frame	ENST00000264555	ENST00000245907		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
5CDS-5UTR	ENST00000264555	ENST00000599668		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
In-frame	ENST00000413872	ENST00000245907		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
5CDS-5UTR	ENST00000413872	ENST00000599668		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
In-frame	ENST00000533464	ENST00000245907		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
5CDS-5UTR	ENST00000533464	ENST00000599668		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
In-frame	ENST00000416188	ENST00000245907		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
5CDS-5UTR	ENST00000416188	ENST00000599668		ChiTaRS3.1			BF873067	PHRF1	chr11	601678	-	C3	chr19	6677962	+
intron-intron	ENST00000353411	ENST00000336665		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000353411	ENST00000304032		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000353411	ENST00000409538		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000353411	ENST00000428334		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000353411	ENST00000409457		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522552	ENST00000336665		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522552	ENST00000304032		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522552	ENST00000409538		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522552	ENST00000428334		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522552	ENST00000409457		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000521216	ENST00000336665		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000521216	ENST00000304032		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000521216	ENST00000409538		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000521216	ENST00000428334		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000521216	ENST00000409457		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000517625	ENST00000336665		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000517625	ENST00000304032		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000517625	ENST00000409538		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000517625	ENST00000428334		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000517625	ENST00000409457		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522855	ENST00000336665		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522855	ENST00000304032		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522855	ENST00000409538		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522855	ENST00000428334		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000522855	ENST00000409457		ChiTaRS3.1			CV338477	SKP1	chr5	133506994	-	AGAP1	chr2	236434058	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807617	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000378536	ENST00000564353		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-intron	ENST00000378536	ENST00000345005		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-intron	ENST00000378536	ENST00000395066		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-3UTR	ENST00000378536	ENST00000348245		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-3UTR	ENST00000378536	ENST00000352989		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-intron	ENST00000478223	ENST00000564353		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-intron	ENST00000478223	ENST00000345005		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-intron	ENST00000478223	ENST00000395066		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-3UTR	ENST00000478223	ENST00000348245		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-3UTR	ENST00000478223	ENST00000352989		ChiTaRS3.1			BE770177	SKI	chr1	2233981	-	CLK3	chr15	74919979	+
intron-3CDS	ENST00000435706	ENST00000435706		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000435706	ENST00000264331		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000435706	ENST00000542520		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000435706	ENST00000540199		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000435706	ENST00000475717		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000264331	ENST00000435706		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000264331	ENST00000264331		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000264331	ENST00000542520		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000264331	ENST00000540199		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000264331	ENST00000475717		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000542520	ENST00000435706		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000542520	ENST00000264331		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000542520	ENST00000542520		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000542520	ENST00000540199		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000542520	ENST00000475717		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000540199	ENST00000435706		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000540199	ENST00000264331		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000540199	ENST00000542520		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000540199	ENST00000540199		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000540199	ENST00000475717		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000475717	ENST00000435706		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000475717	ENST00000264331		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000475717	ENST00000542520		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-3CDS	ENST00000475717	ENST00000540199		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000475717	ENST00000475717		ChiTaRS3.1			BF154577	TOP2B	chr3	25640945	-	TOP2B	chr3	25642718	-
intron-intron	ENST00000543385	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000543385	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000336727	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000344733	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000382788	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000306648	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000338806	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000508158	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000543385		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000336727		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000344733		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000382788		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000306648		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000338806		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000508158		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-intron	ENST00000538395	ENST00000538395		ChiTaRS3.1			BF224007	RGS12	chr4	3422189	-	RGS12	chr4	3429606	-
intron-3CDS	ENST00000263593	ENST00000263593		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000263593	ENST00000545756		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000263593	ENST00000525730		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000545756	ENST00000263593		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000545756	ENST00000545756		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000545756	ENST00000525730		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000525730	ENST00000263593		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000525730	ENST00000545756		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000525730	ENST00000525730		ChiTaRS3.1			BG960497	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000229340	ENST00000446041		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000229340	ENST00000393015		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000229340	ENST00000507429		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000229340	ENST00000324194		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000229340	ENST00000453248		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000432953	ENST00000446041		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000432953	ENST00000393015		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000432953	ENST00000507429		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000432953	ENST00000324194		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000432953	ENST00000453248		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000534951	ENST00000446041		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000534951	ENST00000393015		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000534951	ENST00000507429		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000534951	ENST00000324194		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000534951	ENST00000453248		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000543364	ENST00000446041		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000543364	ENST00000393015		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000543364	ENST00000507429		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000543364	ENST00000324194		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
intron-intron	ENST00000543364	ENST00000453248		ChiTaRS3.1			BE819067	RAB35	chr12	120534745	-	SLC25A36	chr3	140678382	-
In-frame	ENST00000237530	ENST00000237530		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
In-frame	ENST00000237530	ENST00000373622		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
5CDS-intron	ENST00000237530	ENST00000470352		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-3CDS	ENST00000373622	ENST00000237530		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-3CDS	ENST00000373622	ENST00000373622		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-intron	ENST00000373622	ENST00000470352		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-3CDS	ENST00000470352	ENST00000237530		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-3CDS	ENST00000470352	ENST00000373622		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-intron	ENST00000470352	ENST00000470352		ChiTaRS3.1			BI051087	RPN2	chr20	35826836	-	RPN2	chr20	35833177	+
intron-3UTR	ENST00000390168	ENST00000368921		ChiTaRS3.1			AI672097	H19	chr11	2016466	+	MLLT11	chr1	151040070	-
intron-intron	ENST00000357206	ENST00000331683		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000374309		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000432529		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000413312		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000272898		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000447990		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000357206	ENST00000414961		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000331683		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000374309		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000432529		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000413312		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000272898		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000447990		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000287727	ENST00000414961		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000331683		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000374309		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000432529		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000413312		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000272898		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000447990		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000371591	ENST00000414961		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000331683		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000374309		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000432529		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000413312		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000272898		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000447990		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000469134	ENST00000414961		ChiTaRS3.1			BF355567	ZFYVE9	chr1	52794352	+	SPAG16	chr2	215261495	+
intron-intron	ENST00000477567	ENST00000496112		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
intron-intron	ENST00000477567	ENST00000447123		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
intron-intron	ENST00000477567	ENST00000223369		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
5UTR-intron	ENST00000215743	ENST00000496112		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
5UTR-intron	ENST00000215743	ENST00000447123		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
5UTR-intron	ENST00000215743	ENST00000223369		ChiTaRS3.1			AF370417	MMP11	chr22	24115044	-	YKT6	chr7	44250554	+
intron-3UTR	ENST00000407721	ENST00000407721		ChiTaRS3.1			CR741097	DHCR7	chr11	71145875	+	DHCR7	chr11	71145852	-
intron-3UTR	ENST00000407721	ENST00000355527		ChiTaRS3.1			CR741097	DHCR7	chr11	71145875	+	DHCR7	chr11	71145852	-
intron-3UTR	ENST00000355527	ENST00000407721		ChiTaRS3.1			CR741097	DHCR7	chr11	71145875	+	DHCR7	chr11	71145852	-
intron-3UTR	ENST00000355527	ENST00000355527		ChiTaRS3.1			CR741097	DHCR7	chr11	71145875	+	DHCR7	chr11	71145852	-
intron-3UTR	ENST00000175091	ENST00000313949		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371098		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-3UTR	ENST00000175091	ENST00000371075		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-3UTR	ENST00000175091	ENST00000371100		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371099		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371102		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-3UTR	ENST00000175091	ENST00000464624		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000306120		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371095		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371085		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000354359		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000265620		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000306090		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
intron-intron	ENST00000175091	ENST00000371081		ChiTaRS3.1			AW377567	LAPTM4A	chr2	20240703	+	GNAS	chr20	57484577	+
3UTR-3CDS	ENST00000267935	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000267935	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000267935	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000267935	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000267935	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000267935	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-3CDS	ENST00000567195	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000567195	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000567195	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000567195	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000567195	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000567195	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-3CDS	ENST00000564815	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000564815	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000564815	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000564815	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000564815	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000564815	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-3CDS	ENST00000338995	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000338995	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000338995	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000338995	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000338995	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000338995	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-3CDS	ENST00000561662	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-intron	ENST00000561662	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-intron	ENST00000561662	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-intron	ENST00000561662	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-intron	ENST00000561662	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-intron	ENST00000561662	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-3CDS	ENST00000562789	ENST00000267935		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000562789	ENST00000567195		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000562789	ENST00000564815		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000562789	ENST00000338995		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000562789	ENST00000561662		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
3UTR-intron	ENST00000562789	ENST00000562789		ChiTaRS3.1			BI002637	COMMD4	chr15	75632352	-	COMMD4	chr15	75632073	+
intron-3UTR	ENST00000324460	ENST00000221494		ChiTaRS3.1			BF762437	HSPA5	chr9	127999282	+	SF3A2	chr19	2248554	+
intron-intron	ENST00000370915	ENST00000250559		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000393436		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000341355		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000537460		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000463493		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000450214		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000543393		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000378985		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000540209		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000539091		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000542145		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000543697		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000370915	ENST00000541216		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000250559		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000393436		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000341355		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000537460		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000463493		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000450214		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000543393		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000378985		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000540209		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000539091		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000542145		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000543697		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000253001	ENST00000541216		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000250559		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000393436		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000341355		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000537460		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000463493		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000450214		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000543393		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000378985		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000540209		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000539091		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000542145		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000543697		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000279068	ENST00000541216		ChiTaRS3.1			BC057387	LSM14B	chr20	60704636	+	RAP1B	chr12	69020638	-
intron-intron	ENST00000296255	ENST00000368655		ChiTaRS3.1			BE873777	RPN1	chr3	128385421	+	GATAD2B	chr1	153894765	+
intron-intron	ENST00000497289	ENST00000368655		ChiTaRS3.1			BE873777	RPN1	chr3	128385421	+	GATAD2B	chr1	153894765	+
intron-intron	ENST00000490166	ENST00000368655		ChiTaRS3.1			BE873777	RPN1	chr3	128385421	+	GATAD2B	chr1	153894765	+
intron-intron	ENST00000308482	ENST00000308482		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000308482	ENST00000468950		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000308482	ENST00000289175		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000308482	ENST00000244815		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000308482	ENST00000392000		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000468950	ENST00000308482		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000468950	ENST00000468950		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000468950	ENST00000289175		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000468950	ENST00000244815		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000468950	ENST00000392000		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000289175	ENST00000308482		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000289175	ENST00000468950		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000289175	ENST00000289175		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000289175	ENST00000244815		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000289175	ENST00000392000		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000244815	ENST00000308482		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000244815	ENST00000468950		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000244815	ENST00000289175		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000244815	ENST00000244815		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000244815	ENST00000392000		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000392000	ENST00000308482		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000392000	ENST00000468950		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000392000	ENST00000289175		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000392000	ENST00000244815		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-intron	ENST00000392000	ENST00000392000		ChiTaRS3.1			T93337	LRRFIP1	chr2	238667288	-	LRRFIP1	chr2	238667052	+
intron-3UTR	ENST00000295470	ENST00000203166		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-intron	ENST00000295470	ENST00000379045		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-3UTR	ENST00000349655	ENST00000203166		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-intron	ENST00000349655	ENST00000379045		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-3UTR	ENST00000602300	ENST00000203166		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-intron	ENST00000602300	ENST00000379045		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-3UTR	ENST00000502762	ENST00000203166		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-intron	ENST00000502762	ENST00000379045		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-3UTR	ENST00000514511	ENST00000203166		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
intron-intron	ENST00000514511	ENST00000379045		ChiTaRS3.1			D20017	HNRNPDL	chr4	83347219	-	HAUS5	chr19	36115879	+
3UTR-3UTR	ENST00000473706	ENST00000231061		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
3UTR-intron	ENST00000473706	ENST00000537849		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
3UTR-3UTR	ENST00000380834	ENST00000231061		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
3UTR-intron	ENST00000380834	ENST00000537849		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
intron-3UTR	ENST00000260662	ENST00000231061		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
intron-intron	ENST00000260662	ENST00000537849		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
intron-3UTR	ENST00000395845	ENST00000231061		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
intron-intron	ENST00000395845	ENST00000537849		ChiTaRS3.1			BU625397	CENPO	chr2	25045191	-	SPARC	chr5	151042783	+
intron-intron	ENST00000393445	ENST00000263593		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000393445	ENST00000545756		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000393445	ENST00000525730		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000258428	ENST00000263593		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000258428	ENST00000545756		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000258428	ENST00000525730		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000465835	ENST00000263593		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000465835	ENST00000545756		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000465835	ENST00000525730		ChiTaRS3.1			BF934287	REV1	chr2	100019529	-	SIAE	chr11	124523556	+
intron-intron	ENST00000334389	ENST00000377791		ChiTaRS3.1			T07947	LINC00643	chr14	62596727	+	HIST1H2AC	chr6	26138620	-
intron-3UTR	ENST00000334389	ENST00000602637		ChiTaRS3.1			T07947	LINC00643	chr14	62596727	+	HIST1H2AC	chr6	26138620	-
3UTR-5UTR	ENST00000268182	ENST00000368884		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
3UTR-5UTR	ENST00000268182	ENST00000368881		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
3UTR-intron	ENST00000268182	ENST00000469786		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-5UTR	ENST00000560738	ENST00000368884		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-5UTR	ENST00000560738	ENST00000368881		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-intron	ENST00000560738	ENST00000469786		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-5UTR	ENST00000560020	ENST00000368884		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-5UTR	ENST00000560020	ENST00000368881		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-intron	ENST00000560020	ENST00000469786		ChiTaRS3.1			U51007	IQGAP1	chr15	91045344	-	PSMD4	chr1	151227233	+
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266526	EWSR1	chr22	29685434	+	FLI1	chr11	128656786	+
intron-5UTR	ENST00000372022	ENST00000439590		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-5UTR	ENST00000372022	ENST00000311111		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000372022	ENST00000584577		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000372022	ENST00000534490		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000372022	ENST00000533498		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-5UTR	ENST00000468290	ENST00000439590		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-5UTR	ENST00000468290	ENST00000311111		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000468290	ENST00000584577		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000468290	ENST00000534490		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
intron-intron	ENST00000468290	ENST00000533498		ChiTaRS3.1			CR746137	SURF6	chr9	136199561	+	RPL38	chr17	72199817	+
3UTR-intron	ENST00000353703	ENST00000361156		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000353703	ENST00000347108		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000353703	ENST00000361396		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000353703	ENST00000376829		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000353703	ENST00000466027		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-intron	ENST00000479421	ENST00000361156		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-intron	ENST00000479421	ENST00000347108		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-intron	ENST00000479421	ENST00000361396		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-intron	ENST00000479421	ENST00000376829		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-intron	ENST00000479421	ENST00000466027		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000372839	ENST00000361156		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000372839	ENST00000347108		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000372839	ENST00000361396		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000372839	ENST00000376829		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
3UTR-intron	ENST00000372839	ENST00000466027		ChiTaRS3.1			BU675977	YWHAB	chr20	43537082	+	DZIP1	chr13	96271828	+
intron-3CDS	ENST00000279101	ENST00000279101		ChiTaRS3.1			BF109077	CABLES2	chr20	60965445	-	CABLES2	chr20	60968063	-
intron-intron	ENST00000358015	ENST00000373823		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000373808		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000436847		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000449733		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000412819		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000394353		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000341272		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000545652		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000373818		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000485767		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000373807		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000358015	ENST00000373806		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000373823		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000373808		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000436847		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000449733		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000412819		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000394353		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000341272		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000545652		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000373818		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000485767		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000373807		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-intron	ENST00000416373	ENST00000373806		ChiTaRS3.1			BF755677	RAD23B	chr9	110062421	-	GSN	chr9	124080776	-
intron-3UTR	ENST00000331302	ENST00000251527		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000331302	ENST00000497111		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000331302	ENST00000435514		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-3UTR	ENST00000323434	ENST00000251527		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000323434	ENST00000497111		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000323434	ENST00000435514		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-3UTR	ENST00000536489	ENST00000251527		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000536489	ENST00000497111		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000536489	ENST00000435514		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-3UTR	ENST00000576001	ENST00000251527		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000576001	ENST00000497111		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-intron	ENST00000576001	ENST00000435514		ChiTaRS3.1			BF939647	RPH3AL	chr17	62772	+	ESYT2	chr7	158524301	+
intron-3CDS	ENST00000265080	ENST00000382582		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000355994		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000397875		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000397866		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000397865		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000527041		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000265080	ENST00000359645		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000528160		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000397869		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000354542		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000526111		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000580402		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000579129		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000578193		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000397863		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000397860		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000265080	ENST00000487778		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000382582		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000355994		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000397875		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000397866		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000397865		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000527041		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000502677	ENST00000359645		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000528160		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000397869		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000354542		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000526111		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000580402		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000579129		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000578193		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000397863		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000397860		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-intron	ENST00000502677	ENST00000487778		ChiTaRS3.1			DA342507	RASGRF2	chr5	80291646	-	MBP	chr18	74702020	-
intron-3CDS	ENST00000333229	ENST00000397278		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000426053		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000422706		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000319136		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000347595		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000333229	ENST00000397279		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000333229	ENST00000440669		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000397278		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000426053		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000422706		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000319136		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000347595		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000342449	ENST00000397279		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000342449	ENST00000440669		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000397278		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000426053		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000422706		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000319136		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000347595		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000380800	ENST00000397279		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000380800	ENST00000440669		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000397278		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000426053		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000422706		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000319136		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000347595		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000341322	ENST00000397279		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000341322	ENST00000440669		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000397278		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000426053		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000422706		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000319136		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000347595		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-3CDS	ENST00000470108	ENST00000397279		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
intron-intron	ENST00000470108	ENST00000440669		ChiTaRS3.1			BF821257	BRWD1	chr21	40558365	-	APOL1	chr22	36661686	+
5CDS-intron	ENST00000366628	ENST00000264741		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
5CDS-intron	ENST00000366628	ENST00000422441		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
5CDS-intron	ENST00000366627	ENST00000264741		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
5CDS-intron	ENST00000366627	ENST00000422441		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
3UTR-intron	ENST00000490098	ENST00000264741		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
3UTR-intron	ENST00000490098	ENST00000422441		ChiTaRS3.1			BI670307	NTPCR	chr1	233105795	+	ITGA9	chr3	37733622	-
5CDS-intron	ENST00000314117	ENST00000301335		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000314117	ENST00000571650		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000314117	ENST00000382147		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000314117	ENST00000412517		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000314117	ENST00000574274		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000454158	ENST00000301335		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000454158	ENST00000571650		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000454158	ENST00000382147		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000454158	ENST00000412517		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
5CDS-intron	ENST00000454158	ENST00000574274		ChiTaRS3.1			BG002707	RELL1	chr4	37640069	-	SLC43A2	chr17	1505674	-
intron-intron	ENST00000345330	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000345330	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000351217	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000542234	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000562924	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000563691	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000545878	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000287226	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000345330		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000351217		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000542234		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000562924		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000563691		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000545878		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000287226		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000564551	ENST00000564551		ChiTaRS3.1			BE086607	NPTN	chr15	73919337	+	NPTN	chr15	73917939	+
intron-intron	ENST00000515359	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000515359	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000308775	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000541308	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000539901	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000545947	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000538711	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000515359		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000308775		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000541308		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000539901		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000545947		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000538711		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000479935	ENST00000479935		ChiTaRS3.1			CV413287	DAG1	chr3	49560947	+	DAG1	chr3	49550377	+
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000548589	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000548589	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000548589	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000548589	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000552699	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000552699	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000552699	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000552699	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000267115	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000267115	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000267115	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000267115	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000549385	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000549385	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000549385	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000549385	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000423828	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000423828	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000423828	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000423828	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000395006	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000395006	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000395006	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000395006	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000547798	ENST00000552699		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000547798	ENST00000549385		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000547798	ENST00000395006		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
intron-intron	ENST00000547798	ENST00000547798		ChiTaRS3.1			BI093457	TMBIM6	chr12	50158556	-	TMBIM6	chr12	50158661	+
3UTR-intron	ENST00000291547	ENST00000454189		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
3UTR-intron	ENST00000291547	ENST00000398361		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
3UTR-intron	ENST00000291547	ENST00000316715		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
3UTR-intron	ENST00000291547	ENST00000493677		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
3UTR-intron	ENST00000291547	ENST00000355135		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
3UTR-intron	ENST00000291547	ENST00000356942		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000454189		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000398361		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000316715		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000493677		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000355135		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000432907	ENST00000356942		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000454189		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000398361		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000316715		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000493677		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000355135		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-intron	ENST00000607150	ENST00000356942		ChiTaRS3.1			U68727	PKNOX1	chr21	44452034	+	GPM6B	chrX	13824062	+
intron-3UTR	ENST00000428314	ENST00000409586		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000428314	ENST00000289989		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-intron	ENST00000428314	ENST00000453427		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000389524	ENST00000409586		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000389524	ENST00000289989		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-intron	ENST00000389524	ENST00000453427		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000409816	ENST00000409586		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000409816	ENST00000289989		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-intron	ENST00000409816	ENST00000453427		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000409090	ENST00000409586		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3UTR	ENST00000409090	ENST00000289989		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-intron	ENST00000409090	ENST00000453427		ChiTaRS3.1			BG984747	MYO7B	chr2	128351764	-	C8orf58	chr8	22461178	+
intron-3CDS	ENST00000381638	ENST00000381638		ChiTaRS3.1			BF990727	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000381638	ENST00000574474		ChiTaRS3.1			BF990727	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-3CDS	ENST00000574474	ENST00000381638		ChiTaRS3.1			BF990727	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000574474	ENST00000574474		ChiTaRS3.1			BF990727	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
3UTR-intron	ENST00000427043	ENST00000232458		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
3UTR-intron	ENST00000427043	ENST00000392692		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
3UTR-intron	ENST00000427043	ENST00000427830		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
3UTR-intron	ENST00000427043	ENST00000417960		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
3UTR-intron	ENST00000427043	ENST00000441497		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
3UTR-intron	ENST00000427043	ENST00000540509		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000232458		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000392692		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000427830		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000417960		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000441497		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-intron	ENST00000221740	ENST00000540509		ChiTaRS3.1			BG878547	CASP14	chr19	15168836	+	ECT2	chr3	172471268	+
intron-3CDS	ENST00000609104	ENST00000264079		ChiTaRS3.1			BQ333917	USP6NL	chr10	11505501	-	MCOLN1	chr19	7591659	-
intron-3CDS	ENST00000277575	ENST00000264079		ChiTaRS3.1			BQ333917	USP6NL	chr10	11505501	-	MCOLN1	chr19	7591659	-
intron-3CDS	ENST00000379237	ENST00000264079		ChiTaRS3.1			BQ333917	USP6NL	chr10	11505501	-	MCOLN1	chr19	7591659	-
intron-3CDS	ENST00000443016	ENST00000264079		ChiTaRS3.1			BQ333917	USP6NL	chr10	11505501	-	MCOLN1	chr19	7591659	-
intron-3CDS	ENST00000609853	ENST00000264079		ChiTaRS3.1			BQ333917	USP6NL	chr10	11505501	-	MCOLN1	chr19	7591659	-
3UTR-3CDS	ENST00000259154	ENST00000259154		ChiTaRS3.1			DA730857	KCTD3	chr1	215794619	+	KCTD3	chr1	215752353	+
3UTR-intron	ENST00000259154	ENST00000495537		ChiTaRS3.1			DA730857	KCTD3	chr1	215794619	+	KCTD3	chr1	215752353	+
3UTR-3CDS	ENST00000495537	ENST00000259154		ChiTaRS3.1			DA730857	KCTD3	chr1	215794619	+	KCTD3	chr1	215752353	+
3UTR-intron	ENST00000495537	ENST00000495537		ChiTaRS3.1			DA730857	KCTD3	chr1	215794619	+	KCTD3	chr1	215752353	+
intron-intron	ENST00000309909	ENST00000309909		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000309909	ENST00000455858		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000309909	ENST00000551773		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000455858	ENST00000309909		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000455858	ENST00000455858		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000455858	ENST00000551773		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000551773	ENST00000309909		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000551773	ENST00000455858		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
intron-intron	ENST00000551773	ENST00000551773		ChiTaRS3.1			CV322777	FBXW8	chr12	117429107	+	FBXW8	chr12	117429183	-
3UTR-3UTR	ENST00000344642	ENST00000344642		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
3UTR-intron	ENST00000344642	ENST00000543870		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
3UTR-intron	ENST00000344642	ENST00000484271		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-3UTR	ENST00000543870	ENST00000344642		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-intron	ENST00000543870	ENST00000543870		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-intron	ENST00000543870	ENST00000484271		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-3UTR	ENST00000484271	ENST00000344642		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-intron	ENST00000484271	ENST00000543870		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-intron	ENST00000484271	ENST00000484271		ChiTaRS3.1			AA460617	LDLRAD2	chr1	22149315	-	LDLRAD2	chr1	22149798	-
intron-3UTR	ENST00000389834	ENST00000389834		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000389834	ENST00000448392		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000389834	ENST00000307216		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000389834	ENST00000568432		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000448392	ENST00000389834		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000448392	ENST00000448392		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000448392	ENST00000307216		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000448392	ENST00000568432		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000307216	ENST00000389834		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000307216	ENST00000448392		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000307216	ENST00000307216		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000307216	ENST00000568432		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000568432	ENST00000389834		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-3UTR	ENST00000568432	ENST00000448392		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000568432	ENST00000307216		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000568432	ENST00000568432		ChiTaRS3.1			BU609207	TMEM87A	chr15	42503472	+	TMEM87A	chr15	42503669	-
intron-intron	ENST00000277865	ENST00000380252		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000277865	ENST00000380259		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000277865	ENST00000336906		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000537649	ENST00000380252		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000537649	ENST00000380259		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000537649	ENST00000336906		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000544149	ENST00000380252		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000544149	ENST00000380259		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000544149	ENST00000336906		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000465164	ENST00000380252		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000465164	ENST00000380259		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000465164	ENST00000336906		ChiTaRS3.1			BM807517	GLUD1	chr10	88811238	-	HBG2	chr11	5350596	-
intron-intron	ENST00000392723	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000392723	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000392723	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000392723	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000361398	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000361398	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000361398	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000361398	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000271715	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000271715	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000271715	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000271715	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000368863	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000368863	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000368863	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000368863	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000409503	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000409503	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000409503	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000409503	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000531094	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000531094	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000531094	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000531094	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000540984	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000540984	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000540984	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000540984	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000491586	ENST00000262570		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000491586	ENST00000448878		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000491586	ENST00000476546		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000491586	ENST00000542753		ChiTaRS3.1			BE161687	POGZ	chr1	151396702	-	CHCHD3	chr7	132720451	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408916	AFF1	chr4	87998593	+	KMT2A	chr11	118358993	+
intron-intron	ENST00000377989	ENST00000377989		ChiTaRS3.1			AW275617	CMAHP	chr6	25125217	-	CMAHP	chr6	25125106	+
5CDS-intron	ENST00000392844	ENST00000299543		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000392844	ENST00000075430		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000392844	ENST00000587623		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000299543		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000075430		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000257789	ENST00000587623		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000299543		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000075430		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
5CDS-intron	ENST00000546266	ENST00000587623		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000299543		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000075430		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
3UTR-intron	ENST00000417380	ENST00000587623		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000299543		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000075430		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-intron	ENST00000478028	ENST00000587623		ChiTaRS3.1			BF924797	ORC3	chr6	88372731	-	CTDP1	chr18	77505292	-
intron-3CDS	ENST00000367963	ENST00000367963		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000367963	ENST00000336749		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-5UTR	ENST00000367963	ENST00000489128		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-intron	ENST00000367963	ENST00000392401		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000336749	ENST00000367963		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000336749	ENST00000336749		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-5UTR	ENST00000336749	ENST00000489128		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-intron	ENST00000336749	ENST00000392401		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000489128	ENST00000367963		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000489128	ENST00000336749		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-5UTR	ENST00000489128	ENST00000489128		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-intron	ENST00000489128	ENST00000392401		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000392401	ENST00000367963		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-3CDS	ENST00000392401	ENST00000336749		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-5UTR	ENST00000392401	ENST00000489128		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-intron	ENST00000392401	ENST00000392401		ChiTaRS3.1			DA498677	MOXD1	chr6	132617526	-	MOXD1	chr6	132644001	-
intron-intron	ENST00000304685	ENST00000381898		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000304685	ENST00000333082		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000304685	ENST00000246015		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000304685	ENST00000335877		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000304685	ENST00000438768		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000304685	ENST00000484891		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000381898		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000333082		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000246015		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000335877		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000438768		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000536277	ENST00000484891		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000381898		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000333082		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000246015		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000335877		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000438768		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000360851	ENST00000484891		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000381898		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000333082		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000246015		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000335877		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000438768		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-intron	ENST00000539189	ENST00000484891		ChiTaRS3.1			AA309217	RGL1	chr1	183843614	-	PSMF1	chr20	1102943	-
intron-3UTR	ENST00000346128	ENST00000379520		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000346128	ENST00000379519		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000346128	ENST00000261353		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000346128	ENST00000402003		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000346128	ENST00000402708		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000346128	ENST00000495673		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000400011	ENST00000379520		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000400011	ENST00000379519		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000400011	ENST00000261353		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000400011	ENST00000402003		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000400011	ENST00000402708		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000400011	ENST00000495673		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000356107	ENST00000379520		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000356107	ENST00000379519		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000356107	ENST00000261353		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000356107	ENST00000402003		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000356107	ENST00000402708		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000356107	ENST00000495673		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000545208	ENST00000379520		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000545208	ENST00000379519		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000545208	ENST00000261353		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000545208	ENST00000402003		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000545208	ENST00000402708		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000545208	ENST00000495673		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000495972	ENST00000379520		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000495972	ENST00000379519		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000495972	ENST00000261353		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-3UTR	ENST00000495972	ENST00000402003		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000495972	ENST00000402708		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000495972	ENST00000495673		ChiTaRS3.1			BU620057	TJP1	chr15	30027791	-	YPEL5	chr2	30382417	-
intron-intron	ENST00000257622	ENST00000257622		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000257622	ENST00000446813		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000257622	ENST00000395270		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000257622	ENST00000358357		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000257622	ENST00000434423		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000446813	ENST00000257622		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000446813	ENST00000446813		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000446813	ENST00000395270		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000446813	ENST00000358357		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000446813	ENST00000434423		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000395270	ENST00000257622		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000395270	ENST00000446813		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000395270	ENST00000395270		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000395270	ENST00000358357		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000395270	ENST00000434423		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000358357	ENST00000257622		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000358357	ENST00000446813		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000358357	ENST00000395270		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000358357	ENST00000358357		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000358357	ENST00000434423		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000434423	ENST00000257622		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000434423	ENST00000446813		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000434423	ENST00000395270		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000434423	ENST00000358357		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
intron-intron	ENST00000434423	ENST00000434423		ChiTaRS3.1			BM715257	POM121	chr7	72383860	-	POM121	chr7	72385290	-
3UTR-3UTR	ENST00000373783	ENST00000373783		ChiTaRS3.1			CA392397	ADO	chr10	64567249	-	ADO	chr10	64566744	+
intron-5UTR	ENST00000288235	ENST00000476233		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-3UTR	ENST00000288235	ENST00000354667		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-intron	ENST00000288235	ENST00000356674		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-5UTR	ENST00000558814	ENST00000476233		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-3UTR	ENST00000558814	ENST00000354667		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-intron	ENST00000558814	ENST00000356674		ChiTaRS3.1			AI888697	MYO1E	chr15	59428769	+	HNRNPA2B1	chr7	26230727	-
intron-intron	ENST00000557401	ENST00000557401		ChiTaRS3.1			BE048757	AREL1	chr14	75128100	+	AREL1	chr14	75128219	-
intron-3UTR	ENST00000557401	ENST00000356357		ChiTaRS3.1			BE048757	AREL1	chr14	75128100	+	AREL1	chr14	75128219	-
intron-intron	ENST00000356357	ENST00000557401		ChiTaRS3.1			BE048757	AREL1	chr14	75128100	+	AREL1	chr14	75128219	-
intron-3UTR	ENST00000356357	ENST00000356357		ChiTaRS3.1			BE048757	AREL1	chr14	75128100	+	AREL1	chr14	75128219	-
intron-intron	ENST00000395867	ENST00000171887		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000395867	ENST00000419504		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000395867	ENST00000430930		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000395867	ENST00000310858		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000395867	ENST00000480665		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000374648	ENST00000171887		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000374648	ENST00000419504		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000374648	ENST00000430930		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000374648	ENST00000310858		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000374648	ENST00000480665		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000357328	ENST00000171887		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000357328	ENST00000419504		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000357328	ENST00000430930		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000357328	ENST00000310858		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000357328	ENST00000480665		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000494133	ENST00000171887		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000494133	ENST00000419504		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000494133	ENST00000430930		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000494133	ENST00000310858		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000494133	ENST00000480665		ChiTaRS3.1			CB266787	ZNF248	chr10	38141497	-	TNS1	chr2	218673114	-
intron-intron	ENST00000314393	ENST00000314393		ChiTaRS3.1			BG995457	ZHX2	chr8	123864122	-	ZHX2	chr8	123864439	+
3UTR-3CDS	ENST00000534336	ENST00000282272		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000337207		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000450567		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000328737		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000409153		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000539527		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-3CDS	ENST00000534336	ENST00000409919		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
3UTR-intron	ENST00000534336	ENST00000477852		ChiTaRS3.1			BE694147	MALAT1	chr11	65268404	-	ANKRD44	chr2	197986109	+
intron-intron	ENST00000411986	ENST00000411986		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000464926		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000370938		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000411986	ENST00000346806		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000411986		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000464926		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000370938		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000464926	ENST00000346806		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000411986		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000464926		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000370938		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000370938	ENST00000346806		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000411986		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000464926		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000370938		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
intron-intron	ENST00000346806	ENST00000346806		ChiTaRS3.1			H71497	CTH	chr1	70879919	+	CTH	chr1	70879222	+
5CDS-5UTR	ENST00000353801	ENST00000539605		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-5UTR	ENST00000353801	ENST00000357997		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000353801	ENST00000542282		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000353801	ENST00000542657		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000353801	ENST00000542374		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000353801	ENST00000337516		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-5UTR	ENST00000371646	ENST00000539605		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-5UTR	ENST00000371646	ENST00000357997		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371646	ENST00000542282		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371646	ENST00000542657		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371646	ENST00000542374		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371646	ENST00000337516		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-5UTR	ENST00000371554	ENST00000539605		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-5UTR	ENST00000371554	ENST00000357997		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371554	ENST00000542282		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371554	ENST00000542657		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371554	ENST00000542374		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
5CDS-intron	ENST00000371554	ENST00000337516		ChiTaRS3.1			DA450947	HSP90AB1	chr6	44216515	+	ANKLE2	chr12	133331719	-
intron-3UTR	ENST00000409947	ENST00000409947		ChiTaRS3.1			AK074577	MAP3K2	chr2	128062312	-	MAP3K2	chr2	128064119	-
intron-intron	ENST00000409947	ENST00000344908		ChiTaRS3.1			AK074577	MAP3K2	chr2	128062312	-	MAP3K2	chr2	128064119	-
intron-3UTR	ENST00000344908	ENST00000409947		ChiTaRS3.1			AK074577	MAP3K2	chr2	128062312	-	MAP3K2	chr2	128064119	-
intron-intron	ENST00000344908	ENST00000344908		ChiTaRS3.1			AK074577	MAP3K2	chr2	128062312	-	MAP3K2	chr2	128064119	-
intron-3UTR	ENST00000477853	ENST00000477853		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-5UTR	ENST00000477853	ENST00000480380		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000477853	ENST00000375199		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000477853	ENST00000375208		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-intron	ENST00000477853	ENST00000356068		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000480380	ENST00000477853		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-5UTR	ENST00000480380	ENST00000480380		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000480380	ENST00000375199		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000480380	ENST00000375208		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-intron	ENST00000480380	ENST00000356068		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375199	ENST00000477853		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-5UTR	ENST00000375199	ENST00000480380		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375199	ENST00000375199		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375199	ENST00000375208		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-intron	ENST00000375199	ENST00000356068		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375208	ENST00000477853		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-5UTR	ENST00000375208	ENST00000480380		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375208	ENST00000375199		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000375208	ENST00000375208		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-intron	ENST00000375208	ENST00000356068		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000356068	ENST00000477853		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-5UTR	ENST00000356068	ENST00000480380		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000356068	ENST00000375199		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-3UTR	ENST00000356068	ENST00000375208		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
intron-intron	ENST00000356068	ENST00000356068		ChiTaRS3.1			CB161407	EMC1	chr1	19561675	+	EMC1	chr1	19545765	-
3UTR-3UTR	ENST00000378482	ENST00000378482		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000378482	ENST00000422612		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000378482	ENST00000545599		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000378482	ENST00000286824		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000378482	ENST00000488893		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-3UTR	ENST00000422612	ENST00000378482		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000422612	ENST00000422612		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000422612	ENST00000545599		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000422612	ENST00000286824		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000422612	ENST00000488893		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-3UTR	ENST00000545599	ENST00000378482		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000545599	ENST00000422612		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000545599	ENST00000545599		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000545599	ENST00000286824		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000545599	ENST00000488893		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-3UTR	ENST00000286824	ENST00000378482		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000286824	ENST00000422612		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000286824	ENST00000545599		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000286824	ENST00000286824		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
3UTR-intron	ENST00000286824	ENST00000488893		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-3UTR	ENST00000488893	ENST00000378482		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-intron	ENST00000488893	ENST00000422612		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-intron	ENST00000488893	ENST00000545599		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-intron	ENST00000488893	ENST00000286824		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-intron	ENST00000488893	ENST00000488893		ChiTaRS3.1			BM315067	TSPAN7	chrX	38547413	-	TSPAN7	chrX	38547703	+
intron-3UTR	ENST00000366997	ENST00000247182		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-3UTR	ENST00000366997	ENST00000554986		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-3UTR	ENST00000366996	ENST00000247182		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-3UTR	ENST00000366996	ENST00000554986		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-3UTR	ENST00000488600	ENST00000247182		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-3UTR	ENST00000488600	ENST00000554986		ChiTaRS3.1			CB267058	LPGAT1	chr1	211950561	-	SIX1	chr14	61112995	-
intron-intron	ENST00000330978	ENST00000410032		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-5UTR	ENST00000330978	ENST00000264605		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-5UTR	ENST00000330978	ENST00000445024		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-3UTR	ENST00000330978	ENST00000468178		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-5UTR	ENST00000330978	ENST00000338530		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-5UTR	ENST00000330978	ENST00000409373		ChiTaRS3.1			BC014948	BOLA2	chr16	29465604	+	MLPH	chr2	238395967	+
intron-3UTR	ENST00000505870	ENST00000540805		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-3UTR	ENST00000505870	ENST00000539194		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-3UTR	ENST00000505870	ENST00000447510		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-3UTR	ENST00000505870	ENST00000505450		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-3UTR	ENST00000505870	ENST00000508167		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-3UTR	ENST00000505870	ENST00000510224		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-intron	ENST00000505870	ENST00000543373		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
intron-intron	ENST00000505870	ENST00000502943		ChiTaRS3.1			BG004548	GMDS-AS1	chr6	2254126	+	PROM1	chr4	15970152	+
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			AW367058	CALR	chr19	13051156	-	CALR	chr19	13054561	-
intron-intron	ENST00000393561	ENST00000580974		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393561	ENST00000299954		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393561	ENST00000335257		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393561	ENST00000581322		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000222399	ENST00000580974		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000222399	ENST00000299954		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000222399	ENST00000335257		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000222399	ENST00000581322		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393560	ENST00000580974		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393560	ENST00000299954		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393560	ENST00000335257		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000393560	ENST00000581322		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000474380	ENST00000580974		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000474380	ENST00000299954		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000474380	ENST00000335257		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000474380	ENST00000581322		ChiTaRS3.1			BG000078	LAMB1	chr7	107641280	-	PITPNC1	chr17	65408961	+
intron-intron	ENST00000357156	ENST00000317178		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000357156	ENST00000431353		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000357156	ENST00000489376		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000480759	ENST00000317178		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000480759	ENST00000431353		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000480759	ENST00000489376		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
5CDS-intron	ENST00000417166	ENST00000317178		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
5CDS-intron	ENST00000417166	ENST00000431353		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
5CDS-intron	ENST00000417166	ENST00000489376		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000300469	ENST00000317178		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000300469	ENST00000431353		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000300469	ENST00000489376		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000374846	ENST00000317178		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000374846	ENST00000431353		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000374846	ENST00000489376		ChiTaRS3.1			T05418	DYNLRB1	chr20	33122694	-	ZNF776	chr19	58220509	-
intron-intron	ENST00000440491	ENST00000369219		ChiTaRS3.1			BX509898	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000338347	ENST00000369219		ChiTaRS3.1			BX509898	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000468645	ENST00000369219		ChiTaRS3.1			BX509898	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000281815	ENST00000369219		ChiTaRS3.1			BX509898	NBPF9	chr1	144520771	-	NBPF14	chr1	145013719	+
intron-intron	ENST00000348715	ENST00000348715		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000348715	ENST00000397647		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000348715	ENST00000263335		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000348715	ENST00000429538		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000348715	ENST00000263334		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000397647	ENST00000348715		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000397647	ENST00000397647		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000397647	ENST00000263335		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000397647	ENST00000429538		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000397647	ENST00000263334		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263335	ENST00000348715		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263335	ENST00000397647		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263335	ENST00000263335		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263335	ENST00000429538		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263335	ENST00000263334		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000429538	ENST00000348715		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000429538	ENST00000397647		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000429538	ENST00000263335		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000429538	ENST00000429538		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000429538	ENST00000263334		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263334	ENST00000348715		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263334	ENST00000397647		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263334	ENST00000263335		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263334	ENST00000429538		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-intron	ENST00000263334	ENST00000263334		ChiTaRS3.1			BI001018	PAX8	chr2	114016930	+	PAX8	chr2	114016618	-
intron-3CDS	ENST00000295746	ENST00000295746		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-3CDS	ENST00000295746	ENST00000491772		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-5UTR	ENST00000295746	ENST00000487834		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-3CDS	ENST00000491772	ENST00000295746		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-3CDS	ENST00000491772	ENST00000491772		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-5UTR	ENST00000491772	ENST00000487834		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-3CDS	ENST00000487834	ENST00000295746		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-3CDS	ENST00000487834	ENST00000491772		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-5UTR	ENST00000487834	ENST00000487834		ChiTaRS3.1			DN913008	KIAA1524	chr3	108271111	-	KIAA1524	chr3	108279644	-
intron-5UTR	ENST00000375640	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375640	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375640	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375641	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375641	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375641	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375638	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375638	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375638	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375635	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375635	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375635	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375639	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375639	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375639	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375642	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375642	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375642	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000395789	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000395789	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000395789	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375633	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000375633	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000375633	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000395788	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000395788	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000395788	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000424962	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000424962	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000424962	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000456268	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000456268	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000456268	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000435938	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000435938	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000435938	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000433752	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000433752	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000433752	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000458514	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000458514	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000458514	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000549426	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000549426	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000549426	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000550200	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000550200	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000550200	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000430690	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000430690	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000430690	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436558	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436558	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000436558	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000456690	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000456690	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000456690	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000439907	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000439907	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000439907	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444974	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444974	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000444974	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000439865	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000439865	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000439865	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000413638	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000413638	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000413638	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000423640	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000423640	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000423640	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444192	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444192	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000444192	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000551797	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000551797	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000551797	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000552514	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000552514	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000552514	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000440361	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000440361	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000440361	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000443974	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000443974	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000443974	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000416886	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000416886	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000416886	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436205	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436205	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000436205	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000450610	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000450610	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000450610	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000433697	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000433697	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000433697	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000414434	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000414434	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000414434	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000421605	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000421605	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000421605	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444331	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000444331	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000444331	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000551957	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000551957	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000551957	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000550492	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000550492	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000550492	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000423916	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000423916	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000423916	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436495	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000436495	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000436495	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000426843	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000426843	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000426843	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000421039	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000421039	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000421039	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000414536	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000414536	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000414536	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400038	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400038	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000400038	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383384	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383384	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000383384	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383385	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383385	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000383385	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383383	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000383383	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000383383	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000547624	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000547624	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000547624	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000550685	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000550685	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000550685	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000400037	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-5UTR	ENST00000400037	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5UTR-intron	ENST00000400037	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400035	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400035	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000400035	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400034	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400034	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000400034	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400039	ENST00000254250		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-5UTR	ENST00000400039	ENST00000345117		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
intron-intron	ENST00000400039	ENST00000532093		ChiTaRS3.1			BI262348	C6orf48	chr6	3096368	-	THAP1	chr8	42698435	-
5CDS-3UTR	ENST00000395762	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000395762	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000395762	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000395762	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-5UTR	ENST00000395762	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000543915	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000543915	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000543915	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000543915	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-5UTR	ENST00000543915	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000449195	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000449195	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000449195	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000449195	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-5UTR	ENST00000449195	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000380922	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000380922	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000380922	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000380922	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-5UTR	ENST00000380922	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000170630	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000170630	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000170630	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-3UTR	ENST00000170630	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
5CDS-5UTR	ENST00000170630	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000565915	ENST00000368704		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000565915	ENST00000368706		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000565915	ENST00000368703		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-3UTR	ENST00000565915	ENST00000368705		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-5UTR	ENST00000565915	ENST00000474991		ChiTaRS3.1			BE717238	IL4R	chr16	27373850	+	S100A16	chr1	153579953	+
intron-intron	ENST00000375244	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375244	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000375244	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000451343	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000451343	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000375247	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000375247	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000479795	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000479795	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000433037	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000433037	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549232	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000549232	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000383159	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000383159	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000489006	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000489006	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000469250	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000469250	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000440248	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000440248	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550212	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000550212	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548649	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000548649	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000424718	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000424718	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000475986	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000475986	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000550539	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000550539	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000471059	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000471059	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551808	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000551808	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000548628	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000548628	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000549652	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000549652	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000553092	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000553092	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552665	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000552665	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000465958	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000465958	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000546684	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000546684	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000464376	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000464376	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000552149	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000552149	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000375203		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000375201		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000468502		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000549095		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000427136		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000439240		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000475964		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000547111		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000293709		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000383156		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000467437		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000553220		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000425571		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-intron	ENST00000551201	ENST00000435768		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
intron-5UTR	ENST00000551201	ENST00000476416		ChiTaRS3.1			AK000928	TNXB	chr6	3464687	-	ATF6B	chr6	3473811	-
3UTR-3UTR	ENST00000344256	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000344256	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000344256	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000344256	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000344256	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000344256	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000379598	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000379598	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000379598	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000379598	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000379598	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000379598	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000467519	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000467519	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000467519	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000467519	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000467519	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000467519	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000245960	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000245960	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000245960	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000245960	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000245960	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000245960	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000439880	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000439880	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000439880	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000439880	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-3UTR	ENST00000439880	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
3UTR-intron	ENST00000439880	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000340833	ENST00000344256		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000340833	ENST00000379598		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000340833	ENST00000467519		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000340833	ENST00000245960		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3UTR	ENST00000340833	ENST00000439880		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-intron	ENST00000340833	ENST00000340833		ChiTaRS3.1			BM702428	CDC25B	chr20	3785902	-	CDC25B	chr20	3785983	+
intron-3CDS	ENST00000464527	ENST00000314332		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-3CDS	ENST00000464527	ENST00000396984		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-3CDS	ENST00000445927	ENST00000314332		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-3CDS	ENST00000445927	ENST00000396984		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-3CDS	ENST00000294947	ENST00000314332		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-3CDS	ENST00000294947	ENST00000396984		ChiTaRS3.1			AI688098	C2orf61	chr2	47387504	+	HIST1H2BC	chr6	26123755	+
intron-intron	ENST00000561594	ENST00000561594		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-3UTR	ENST00000561594	ENST00000362065		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561594	ENST00000561607		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561594	ENST00000565466		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561594	ENST00000568145		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
3UTR-intron	ENST00000362065	ENST00000561594		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
3UTR-3UTR	ENST00000362065	ENST00000362065		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
3UTR-intron	ENST00000362065	ENST00000561607		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
3UTR-intron	ENST00000362065	ENST00000565466		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
3UTR-intron	ENST00000362065	ENST00000568145		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561607	ENST00000561594		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-3UTR	ENST00000561607	ENST00000362065		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561607	ENST00000561607		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561607	ENST00000565466		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000561607	ENST00000568145		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000565466	ENST00000561594		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-3UTR	ENST00000565466	ENST00000362065		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000565466	ENST00000561607		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000565466	ENST00000565466		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000565466	ENST00000568145		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000568145	ENST00000561594		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-3UTR	ENST00000568145	ENST00000362065		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000568145	ENST00000561607		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000568145	ENST00000565466		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-intron	ENST00000568145	ENST00000568145		ChiTaRS3.1			CN263708	FAN1	chr15	31235118	-	FAN1	chr15	31235127	+
intron-3CDS	ENST00000334528	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000334528	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000334528	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000561249	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000561249	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000561249	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000559047	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000559047	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000559047	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000558197	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000558197	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000558197	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000559150	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000559150	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000559150	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000320930	ENST00000262030		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-3CDS	ENST00000320930	ENST00000552919		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-5UTR	ENST00000320930	ENST00000550162		ChiTaRS3.1			AK127078	FMN1	chr15	33065737	-	ATP5B	chr12	57033823	-
intron-intron	ENST00000221476	ENST00000263088		ChiTaRS3.1			BG994088	CKM	chr19	45815024	-	PLD2	chr17	4714517	+
intron-intron	ENST00000221476	ENST00000572940		ChiTaRS3.1			BG994088	CKM	chr19	45815024	-	PLD2	chr17	4714517	+
intron-3UTR	ENST00000258530	ENST00000258530		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000258530	ENST00000539978		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000258530	ENST00000546731		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000258530	ENST00000551662		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000258530	ENST00000549573		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-3UTR	ENST00000539978	ENST00000258530		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000539978	ENST00000539978		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000539978	ENST00000546731		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000539978	ENST00000551662		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000539978	ENST00000549573		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-3UTR	ENST00000546731	ENST00000258530		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000546731	ENST00000539978		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000546731	ENST00000546731		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000546731	ENST00000551662		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000546731	ENST00000549573		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-3UTR	ENST00000551662	ENST00000258530		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000551662	ENST00000539978		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000551662	ENST00000546731		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000551662	ENST00000551662		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000551662	ENST00000549573		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-3UTR	ENST00000549573	ENST00000258530		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000549573	ENST00000539978		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000549573	ENST00000546731		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000549573	ENST00000551662		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-intron	ENST00000549573	ENST00000549573		ChiTaRS3.1			BF092438	APPL2	chr12	105567301	+	APPL2	chr12	105567160	-
intron-3CDS	ENST00000318607	ENST00000353332		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000318607	ENST00000420925		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000318607	ENST00000296003		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000318607	ENST00000351233		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519004	ENST00000353332		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519004	ENST00000420925		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519004	ENST00000296003		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519004	ENST00000351233		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000522387	ENST00000353332		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000522387	ENST00000420925		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000522387	ENST00000296003		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000522387	ENST00000351233		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519596	ENST00000353332		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519596	ENST00000420925		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519596	ENST00000296003		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000519596	ENST00000351233		ChiTaRS3.1			DB265528	PABPC1	chr8	101734039	-	MTMR14	chr3	9691293	+
intron-3CDS	ENST00000263377	ENST00000263377		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000263377	ENST00000371835		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000263377	ENST00000360016		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-intron	ENST00000263377	ENST00000602230		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000371835	ENST00000263377		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000371835	ENST00000371835		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000371835	ENST00000360016		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-intron	ENST00000371835	ENST00000602230		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000360016	ENST00000263377		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000360016	ENST00000371835		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000360016	ENST00000360016		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-intron	ENST00000360016	ENST00000602230		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000602230	ENST00000263377		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000602230	ENST00000371835		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-3CDS	ENST00000602230	ENST00000360016		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
intron-intron	ENST00000602230	ENST00000602230		ChiTaRS3.1			BF345618	BRD4	chr19	15366405	+	BRD4	chr19	15366292	-
3UTR-3CDS	ENST00000380737	ENST00000308317		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-intron	ENST00000380737	ENST00000396249		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-intron	ENST00000380737	ENST00000250379		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-3CDS	ENST00000315985	ENST00000308317		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-intron	ENST00000315985	ENST00000396249		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-intron	ENST00000315985	ENST00000250379		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
intron-3CDS	ENST00000523473	ENST00000308317		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
intron-intron	ENST00000523473	ENST00000396249		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
intron-intron	ENST00000523473	ENST00000250379		ChiTaRS3.1			BF771688	PPP2R2A	chr8	26227958	-	GEMIN2	chr14	39602895	-
3UTR-3CDS	ENST00000558401	ENST00000558401		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-3CDS	ENST00000558401	ENST00000559916		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-3CDS	ENST00000558401	ENST00000544417		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-intron	ENST00000558401	ENST00000559220		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000559916	ENST00000558401		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000559916	ENST00000559916		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000559916	ENST00000544417		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-intron	ENST00000559916	ENST00000559220		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000544417	ENST00000558401		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000544417	ENST00000559916		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-3CDS	ENST00000544417	ENST00000544417		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
intron-intron	ENST00000544417	ENST00000559220		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-3CDS	ENST00000559220	ENST00000558401		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-3CDS	ENST00000559220	ENST00000559916		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-3CDS	ENST00000559220	ENST00000544417		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
3UTR-intron	ENST00000559220	ENST00000559220		ChiTaRS3.1			AW205028	B2M	chr15	45010280	-	B2M	chr15	45007846	+
In-frame	ENST00000543872	ENST00000543872		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-intron	ENST00000543872	ENST00000578922		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-intron	ENST00000543872	ENST00000300917		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-3UTR	ENST00000543872	ENST00000580498		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-3CDS	ENST00000578922	ENST00000543872		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-intron	ENST00000578922	ENST00000578922		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-intron	ENST00000578922	ENST00000300917		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-3UTR	ENST00000578922	ENST00000580498		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
In-frame	ENST00000300917	ENST00000543872		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-intron	ENST00000300917	ENST00000578922		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-intron	ENST00000300917	ENST00000300917		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
5CDS-3UTR	ENST00000300917	ENST00000580498		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-3CDS	ENST00000580498	ENST00000543872		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-intron	ENST00000580498	ENST00000578922		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-intron	ENST00000580498	ENST00000300917		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-3UTR	ENST00000580498	ENST00000580498		ChiTaRS3.1			BU178528	SMG8	chr17	57290863	+	SMG8	chr17	57290427	+
intron-intron	ENST00000252242	ENST00000458578		ChiTaRS3.1			BM017378	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
intron-3UTR	ENST00000252242	ENST00000342192		ChiTaRS3.1			BM017378	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
intron-intron	ENST00000252242	ENST00000545681		ChiTaRS3.1			BM017378	KRT5	chr12	52908423	+	UBE2L3	chr22	21976957	+
3UTR-3UTR	ENST00000395785	ENST00000534336		ChiTaRS3.1			AW993668	EBAG9	chr8	110577210	+	MALAT1	chr11	65266577	-
intron-3UTR	ENST00000529502	ENST00000534336		ChiTaRS3.1			AW993668	EBAG9	chr8	110577210	+	MALAT1	chr11	65266577	-
3UTR-3UTR	ENST00000337573	ENST00000534336		ChiTaRS3.1			AW993668	EBAG9	chr8	110577210	+	MALAT1	chr11	65266577	-
intron-3UTR	ENST00000531677	ENST00000534336		ChiTaRS3.1			AW993668	EBAG9	chr8	110577210	+	MALAT1	chr11	65266577	-
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BF088188	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3UTR	ENST00000302475	ENST00000302475		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-5UTR	ENST00000302475	ENST00000514701		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000302475	ENST00000515367		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000302475	ENST00000408903		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-3UTR	ENST00000514701	ENST00000302475		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-5UTR	ENST00000514701	ENST00000514701		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000514701	ENST00000515367		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000514701	ENST00000408903		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-3UTR	ENST00000515367	ENST00000302475		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-5UTR	ENST00000515367	ENST00000514701		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000515367	ENST00000515367		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000515367	ENST00000408903		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-3UTR	ENST00000408903	ENST00000302475		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-5UTR	ENST00000408903	ENST00000514701		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000408903	ENST00000515367		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
intron-intron	ENST00000408903	ENST00000408903		ChiTaRS3.1			AA593358	MCC	chr5	112359327	-	MCC	chr5	112359224	+
3UTR-3UTR	ENST00000328024	ENST00000328024		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
3UTR-intron	ENST00000328024	ENST00000601897		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
3UTR-intron	ENST00000328024	ENST00000594216		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-3UTR	ENST00000601897	ENST00000328024		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-intron	ENST00000601897	ENST00000601897		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-intron	ENST00000601897	ENST00000594216		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-3UTR	ENST00000594216	ENST00000328024		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-intron	ENST00000594216	ENST00000601897		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-intron	ENST00000594216	ENST00000594216		ChiTaRS3.1			BM016038	RAB11B	chr19	8469101	-	RAB11B	chr19	8469152	+
intron-3CDS	ENST00000520539	ENST00000262189		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000520539	ENST00000355193		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000520539	ENST00000485655		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000520539	ENST00000485241		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000220959	ENST00000262189		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000220959	ENST00000355193		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000220959	ENST00000485655		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000220959	ENST00000485241		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000518205	ENST00000262189		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000518205	ENST00000355193		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000518205	ENST00000485655		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000518205	ENST00000485241		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000521922	ENST00000262189		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000521922	ENST00000355193		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000521922	ENST00000485655		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000521922	ENST00000485241		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000519528	ENST00000262189		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3CDS	ENST00000519528	ENST00000355193		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000519528	ENST00000485655		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-intron	ENST00000519528	ENST00000485241		ChiTaRS3.1			BF088408	UBR5	chr8	103341539	-	KMT2C	chr7	151860376	-
intron-3UTR	ENST00000252804	ENST00000252804		ChiTaRS3.1			AI799528	PXDN	chr2	1637110	+	PXDN	chr2	1637395	-
intron-intron	ENST00000252804	ENST00000483018		ChiTaRS3.1			AI799528	PXDN	chr2	1637110	+	PXDN	chr2	1637395	-
intron-3UTR	ENST00000483018	ENST00000252804		ChiTaRS3.1			AI799528	PXDN	chr2	1637110	+	PXDN	chr2	1637395	-
intron-intron	ENST00000483018	ENST00000483018		ChiTaRS3.1			AI799528	PXDN	chr2	1637110	+	PXDN	chr2	1637395	-
intron-intron	ENST00000421797	ENST00000421797		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000421797	ENST00000429546		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-3UTR	ENST00000421797	ENST00000352689		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000421797	ENST00000498778		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000429546	ENST00000421797		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000429546	ENST00000429546		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-3UTR	ENST00000429546	ENST00000352689		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000429546	ENST00000498778		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
3UTR-intron	ENST00000352689	ENST00000421797		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
3UTR-intron	ENST00000352689	ENST00000429546		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
3UTR-3UTR	ENST00000352689	ENST00000352689		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
3UTR-intron	ENST00000352689	ENST00000498778		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000498778	ENST00000421797		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000498778	ENST00000429546		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-3UTR	ENST00000498778	ENST00000352689		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-intron	ENST00000498778	ENST00000498778		ChiTaRS3.1			BQ185298	MKLN1	chr7	131180749	-	MKLN1	chr7	131180294	+
intron-3CDS	ENST00000278550	ENST00000316448		ChiTaRS3.1			BE717818	TENM4	chr11	78861068	+	CALR	chr19	13051432	+
intron-3CDS	ENST00000533038	ENST00000316448		ChiTaRS3.1			BE717818	TENM4	chr11	78861068	+	CALR	chr19	13051432	+
intron-intron	ENST00000317147	ENST00000317147		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000317147	ENST00000569240		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000317147	ENST00000441024		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000317147	ENST00000569732		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000317147	ENST00000245138		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569240	ENST00000317147		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569240	ENST00000569240		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569240	ENST00000441024		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569240	ENST00000569732		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569240	ENST00000245138		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000441024	ENST00000317147		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000441024	ENST00000569240		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000441024	ENST00000441024		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000441024	ENST00000569732		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000441024	ENST00000245138		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569732	ENST00000317147		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569732	ENST00000569240		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569732	ENST00000441024		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569732	ENST00000569732		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000569732	ENST00000245138		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000245138	ENST00000317147		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000245138	ENST00000569240		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000245138	ENST00000441024		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000245138	ENST00000569732		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
intron-intron	ENST00000245138	ENST00000245138		ChiTaRS3.1			AW835608	CNOT1	chr16	58651042	+	CNOT1	chr16	58650521	-
In-frame	ENST00000435275	ENST00000524630		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000529919		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000399039		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000360682		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000361796		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000361391		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000530094		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000428599		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000361332		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000527467		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000415361		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000532245		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000532463		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000528232		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000529986		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000531014		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000358694		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000526772		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000532787		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000533667		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000529873		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000525902		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000529526		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000532649		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000426142		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000532844		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000528621		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000399050		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000526357		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000530748		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000534579		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000435275	ENST00000526938		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000524630		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000529919		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000399039		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000360682		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000361796		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000361391		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000530094		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000428599		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000361332		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000527467		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000415361		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000532245		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000532463		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000528232		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000529986		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000531014		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000358694		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000526772		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000532787		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000533667		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000529873		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000525902		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000529526		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000532649		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000426142		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000532844		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000528621		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000399050		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000526357		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000530748		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000534579		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000440692	ENST00000526938		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000524630		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000529919		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000399039		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000360682		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000361796		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000361391		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000530094		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000428599		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000361332		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000527467		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000415361		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000532245		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000532463		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000528232		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000529986		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000531014		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000358694		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000526772		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000532787		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000533667		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000529873		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000525902		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000529526		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000532649		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000426142		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000532844		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000528621		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000399050		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000526357		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000530748		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000534579		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000372360	ENST00000526938		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000524630		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000529919		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000399039		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000360682		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000361796		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000361391		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000530094		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000428599		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000361332		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000527467		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000415361		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000532245		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000532463		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000528232		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000529986		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000531014		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000358694		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000526772		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000532787		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000533667		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000529873		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000525902		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000529526		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000532649		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000426142		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000532844		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000528621		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000399050		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000526357		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000530748		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000534579		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
3UTR-3CDS	ENST00000476545	ENST00000526938		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000524630		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000529919		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000399039		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000360682		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000361796		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000361391		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000530094		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000428599		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000361332		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000527467		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000415361		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000532245		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000532463		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000528232		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000529986		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000531014		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000358694		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000526772		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000532787		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000533667		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000529873		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000525902		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000529526		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000532649		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000426142		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000532844		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000528621		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000399050		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000526357		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000530748		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000534579		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
In-frame	ENST00000360830	ENST00000526938		ChiTaRS3.1			AA535098	RPS24	chr10	79797005	-	CTNND1	chr11	57575966	-
intron-3UTR	ENST00000361568	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000361568	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000361568	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000395523	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000395523	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000395523	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000324816	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000324816	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000324816	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000445576	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000445576	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000445576	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000437001	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000437001	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000437001	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000375137	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000375137	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000375137	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000375143	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000375143	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000375143	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000493548	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000493548	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000493548	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000412651	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000412651	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000412651	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000457509	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000457509	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000457509	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000550796	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000550796	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000550796	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547565	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547565	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547565	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000440533	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000440533	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000440533	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000445462	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000445462	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000445462	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000486923	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000486923	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000486923	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000550232	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000550232	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000550232	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000383152	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000383152	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000383152	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399665	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399665	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399665	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547646	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547646	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547646	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000551703	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000551703	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000551703	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399662	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399662	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399662	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399660	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399660	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399660	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000480985	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000480985	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000480985	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000467040	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000467040	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000467040	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000487203	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000487203	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000487203	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000423347	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000423347	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000423347	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000440507	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000440507	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000440507	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000551222	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000551222	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000551222	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000548089	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000548089	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000548089	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000424353	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000424353	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000424353	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000452304	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000452304	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000452304	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000459936	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000459936	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000459936	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000549741	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000549741	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000549741	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000383301	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000383301	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000383301	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399860	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399860	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399860	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000546871	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000546871	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000546871	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399859	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399859	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399859	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000399856	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399856	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000399856	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000414356	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000414356	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000414356	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000452562	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000452562	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000452562	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000552922	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000552922	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000552922	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000549544	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000549544	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000549544	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000420778	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000420778	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000420778	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000427556	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000427556	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000427556	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000483049	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000483049	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000483049	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547891	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547891	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547891	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000525601	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000525601	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000525601	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547508	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547508	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547508	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000422988	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000422988	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000422988	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547309	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547309	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547309	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000552076	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000552076	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000552076	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000465052	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000465052	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000465052	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000438385	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000438385	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000438385	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000456497	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000456497	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000456497	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-3UTR	ENST00000547558	ENST00000334512		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547558	ENST00000478357		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000547558	ENST00000446377		ChiTaRS3.1			M85868	PPT2	chr6	3484478	-	ZMIZ1	chr10	81075667	-
intron-intron	ENST00000341105	ENST00000434600		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000341105	ENST00000538785		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000341105	ENST00000200639		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000341105	ENST00000371335		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000341105	ENST00000540603		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000489987	ENST00000434600		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000489987	ENST00000538785		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000489987	ENST00000200639		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000489987	ENST00000371335		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000489987	ENST00000540603		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000430265	ENST00000434600		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000430265	ENST00000538785		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000430265	ENST00000200639		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000430265	ENST00000371335		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000430265	ENST00000540603		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000487848	ENST00000434600		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000487848	ENST00000538785		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000487848	ENST00000200639		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000487848	ENST00000371335		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000487848	ENST00000540603		ChiTaRS3.1			AI973078	GATA2	chr3	128198342	+	LAMP2	chrX	119563198	+
intron-intron	ENST00000553780	ENST00000553780		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
intron-intron	ENST00000553780	ENST00000554866		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
intron-intron	ENST00000553780	ENST00000329597		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
intron-intron	ENST00000553780	ENST00000554276		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554866	ENST00000553780		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554866	ENST00000554866		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554866	ENST00000329597		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554866	ENST00000554276		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000329597	ENST00000553780		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000329597	ENST00000554866		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000329597	ENST00000329597		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000329597	ENST00000554276		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554276	ENST00000553780		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554276	ENST00000554866		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554276	ENST00000329597		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
3UTR-intron	ENST00000554276	ENST00000554276		ChiTaRS3.1			AA837688	SERPINA5	chr14	95059371	+	SERPINA5	chr14	95059451	-
intron-intron	ENST00000438796	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000438796	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000414675	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000441090	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000334859	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000425562	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000493726	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000438796		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000414675		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000441090		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000334859		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000425562		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000493726		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
intron-intron	ENST00000536618	ENST00000536618		ChiTaRS3.1			AW806888	LRCH3	chr3	197555739	-	LRCH3	chr3	197554162	+
5CDS-3UTR	ENST00000360184	ENST00000360184		ChiTaRS3.1			AI652598	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516918	-
5CDS-intron	ENST00000360184	ENST00000556791		ChiTaRS3.1			AI652598	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516918	-
intron-3UTR	ENST00000556791	ENST00000360184		ChiTaRS3.1			AI652598	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516918	-
intron-intron	ENST00000556791	ENST00000556791		ChiTaRS3.1			AI652598	DYNC1H1	chr14	102516476	-	DYNC1H1	chr14	102516918	-
intron-3CDS	ENST00000455089	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000455089	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000455089	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000455089	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000342916	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000342916	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000342916	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000342916	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000344576	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000344576	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000344576	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000344576	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000420316	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000420316	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000420316	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000420316	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
3UTR-3CDS	ENST00000275493	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
3UTR-intron	ENST00000275493	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
3UTR-intron	ENST00000275493	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
3UTR-intron	ENST00000275493	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000442591	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000442591	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000442591	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000442591	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000463948	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000463948	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000463948	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000463948	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-3CDS	ENST00000454757	ENST00000299314		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000454757	ENST00000549940		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000454757	ENST00000392919		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000454757	ENST00000549165		ChiTaRS3.1			BF934758	EGFR	chr7	55278614	-	GNPTAB	chr12	102151066	-
intron-intron	ENST00000372447	ENST00000370951		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000405432		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370950		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000454435		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000436161		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000484162		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370949		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370951		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000405432		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370950		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000454435		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000436161		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000484162		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370949		ChiTaRS3.1			AW589928	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
Frame-shit	ENST00000339865	ENST00000339865		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000539466		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000527733		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000399455		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000339865	ENST00000305481		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-3CDS	ENST00000539466	ENST00000339865		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000539466		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000527733		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000399455		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-intron	ENST00000539466	ENST00000305481		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
Frame-shit	ENST00000527733	ENST00000339865		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000539466		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000527733		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000399455		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000527733	ENST00000305481		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
Frame-shit	ENST00000399455	ENST00000339865		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000539466		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000527733		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000399455		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000399455	ENST00000305481		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-3CDS	ENST00000305481	ENST00000339865		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000539466		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000527733		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000399455		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-intron	ENST00000305481	ENST00000305481		ChiTaRS3.1			AW389698	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-intron	ENST00000504087	ENST00000504087		ChiTaRS3.1			CA336858	ANKRD50	chr4	125621279	+	ANKRD50	chr4	125620532	+
intron-intron	ENST00000504087	ENST00000515641		ChiTaRS3.1			CA336858	ANKRD50	chr4	125621279	+	ANKRD50	chr4	125620532	+
intron-intron	ENST00000515641	ENST00000504087		ChiTaRS3.1			CA336858	ANKRD50	chr4	125621279	+	ANKRD50	chr4	125620532	+
intron-intron	ENST00000515641	ENST00000515641		ChiTaRS3.1			CA336858	ANKRD50	chr4	125621279	+	ANKRD50	chr4	125620532	+
intron-3CDS	ENST00000359428	ENST00000359428		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000359428	ENST00000411637		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000359428	ENST00000451030		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000359428	ENST00000483497		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000359428	ENST00000465486		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000411637	ENST00000359428		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000411637	ENST00000411637		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000411637	ENST00000451030		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000411637	ENST00000483497		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000411637	ENST00000465486		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000451030	ENST00000359428		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000451030	ENST00000411637		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000451030	ENST00000451030		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000451030	ENST00000483497		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000451030	ENST00000465486		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000483497	ENST00000359428		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000483497	ENST00000411637		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000483497	ENST00000451030		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000483497	ENST00000483497		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000483497	ENST00000465486		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000465486	ENST00000359428		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000465486	ENST00000411637		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-3CDS	ENST00000465486	ENST00000451030		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000465486	ENST00000483497		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000465486	ENST00000465486		ChiTaRS3.1			BQ329628	NUP214	chr9	134039450	-	NUP214	chr9	134039254	+
intron-intron	ENST00000252744	ENST00000368655		ChiTaRS3.1			AI392738	ZSWIM6	chr5	60729594	-	GATAD2B	chr1	153848756	+
intron-intron	ENST00000228827	ENST00000228827		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000543199		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000537466		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000228827	ENST00000552180		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000228827		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000543199		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000537466		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000543199	ENST00000552180		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000228827		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000543199		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000537466		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000537466	ENST00000552180		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000228827		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000543199		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000537466		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000552180	ENST00000552180		ChiTaRS3.1			AA807808	GPN3	chr12	110893422	-	GPN3	chr12	110893620	+
intron-intron	ENST00000396441	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000396441	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389707	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000401424	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000389708	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000361003	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403290	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403510	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000403482	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000396441		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000389707		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000401424		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000389708		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000361003		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000403290		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000403510		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000403482		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000497429	ENST00000497429		ChiTaRS3.1			BU615448	ARNTL	chr11	13406694	+	ARNTL	chr11	13407103	-
intron-intron	ENST00000269216	ENST00000355162		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000269216	ENST00000346432		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000269216	ENST00000383032		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000581694	ENST00000355162		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000581694	ENST00000346432		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000581694	ENST00000383032		ChiTaRS3.1			AW015488	GATA6	chr18	19756624	-	TBL1Y	chrY	6887815	-
intron-intron	ENST00000435120	ENST00000413465		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000435120	ENST00000359597		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000435120	ENST00000269305		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000435120	ENST00000455263		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000435120	ENST00000420246		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000435120	ENST00000445888		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000435120	ENST00000574684		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000203630	ENST00000413465		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000203630	ENST00000359597		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000203630	ENST00000269305		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000203630	ENST00000455263		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000203630	ENST00000420246		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000203630	ENST00000445888		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000203630	ENST00000574684		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000542154	ENST00000413465		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000542154	ENST00000359597		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000542154	ENST00000269305		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000542154	ENST00000455263		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000542154	ENST00000420246		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000542154	ENST00000445888		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000542154	ENST00000574684		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000539187	ENST00000413465		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000539187	ENST00000359597		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000539187	ENST00000269305		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000539187	ENST00000455263		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000539187	ENST00000420246		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000539187	ENST00000445888		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000539187	ENST00000574684		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000564181	ENST00000413465		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000564181	ENST00000359597		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000564181	ENST00000269305		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000564181	ENST00000455263		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000564181	ENST00000420246		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-3UTR	ENST00000564181	ENST00000445888		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000564181	ENST00000574684		ChiTaRS3.1			BM991038	MLF2	chr12	6857456	+	TP53	chr17	7572728	-
intron-intron	ENST00000578558	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000578558	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000578558	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000578558	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000578558	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000578558	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000327031	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000545457	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000379450	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000579294	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000578558		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000327031		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000545457		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000379450		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000579294		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000584444	ENST00000584444		ChiTaRS3.1			BE467038	FLII	chr17	18149092	+	FLII	chr17	18149323	-
intron-intron	ENST00000434981	ENST00000434981		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000434981	ENST00000507506		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000434981	ENST00000239906		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000434981	ENST00000513056		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000434981		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000507506		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000507506	ENST00000239906		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000513056		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000434981		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000507506		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-3UTR	ENST00000239906	ENST00000239906		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000513056		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000434981		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000507506		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000513056	ENST00000239906		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000513056		ChiTaRS3.1			CN478638	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000330794	ENST00000284719		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000330794	ENST00000344357		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000330794	ENST00000428402		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000330794	ENST00000409546		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-intron	ENST00000330794	ENST00000392560		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000511850	ENST00000284719		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000511850	ENST00000344357		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000511850	ENST00000428402		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-3UTR	ENST00000511850	ENST00000409546		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-intron	ENST00000511850	ENST00000392560		ChiTaRS3.1			R39778	TMEM173	chr5	138855223	+	OLA1	chr2	174939986	+
intron-intron	ENST00000448662	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000448662	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000448662	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000448662	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000448662	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000448662	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000431808	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000284776	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000437304	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000319471	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000449407	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000355634	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000393528	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000418609	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000540628		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000360429		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000568954		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000393524		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000356272		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-intron	ENST00000498125	ENST00000567016		ChiTaRS3.1			BF921368	SORBS2	chr4	186614778	-	PHLPP2	chr16	71748346	+
intron-3UTR	ENST00000233336	ENST00000374436		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-3UTR	ENST00000233336	ENST00000374443		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-3UTR	ENST00000233336	ENST00000374450		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-intron	ENST00000233336	ENST00000462894		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-3UTR	ENST00000460450	ENST00000374436		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-3UTR	ENST00000460450	ENST00000374443		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-3UTR	ENST00000460450	ENST00000374450		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-intron	ENST00000460450	ENST00000462894		ChiTaRS3.1			BF815368	TTL	chr2	113281232	-	EIF6	chr20	33866916	-
intron-intron	ENST00000264151	ENST00000264151		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000264151	ENST00000519810		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000264151	ENST00000522700		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000264151		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000519810		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000519810	ENST00000522700		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000264151		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000519810		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000522700	ENST00000522700		ChiTaRS3.1			BM906098	OSGEPL1	chr2	190612707	-	OSGEPL1	chr2	190613707	-
intron-intron	ENST00000379031	ENST00000354700		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000379031	ENST00000353662		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000379031	ENST00000379037		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000354700		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000353662		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-intron	ENST00000470520	ENST00000379037		ChiTaRS3.1			DA811768	PUSL1	chr1	1245317	+	ACAP3	chr1	1244615	+
intron-3UTR	ENST00000509990	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000509990	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000509990	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000509990	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000509990	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000509990	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000361059	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000361059	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000361059	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000361059	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000361059	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000361059	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000504203	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000504203	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000504203	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000504203	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000504203	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000504203	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000502929	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502929	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502929	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502929	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502929	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502929	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000394800	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394800	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394800	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394800	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394800	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394800	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000507197	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000507197	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000507197	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000507197	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000507197	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000507197	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000394805	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394805	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394805	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394805	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394805	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000394805	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000502499	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502499	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502499	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502499	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502499	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000502499	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000510056	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000510056	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000510056	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000510056	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000510056	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000510056	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000503811	ENST00000295897		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000503811	ENST00000415165		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000503811	ENST00000503124		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000503811	ENST00000509063		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000503811	ENST00000401494		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-intron	ENST00000503811	ENST00000505649		ChiTaRS3.1			AF116688	MATR3	chr5	138631171	-	ALB	chr4	74287034	+
intron-3UTR	ENST00000263805	ENST00000263805		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000263805	ENST00000565380		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000263805	ENST00000565611		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000263805	ENST00000565660		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-3UTR	ENST00000565380	ENST00000263805		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565380	ENST00000565380		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565380	ENST00000565611		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565380	ENST00000565660		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-3UTR	ENST00000565611	ENST00000263805		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565611	ENST00000565380		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565611	ENST00000565611		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565611	ENST00000565660		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-3UTR	ENST00000565660	ENST00000263805		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565660	ENST00000565380		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565660	ENST00000565611		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
intron-intron	ENST00000565660	ENST00000565660		ChiTaRS3.1			BG169418	ZNF106	chr15	42707118	+	ZNF106	chr15	42707064	-
5CDS-3UTR	ENST00000000233	ENST00000000233		ChiTaRS3.1			BF765618	ARF5	chr7	127230161	+	ARF5	chr7	127231421	-
5CDS-intron	ENST00000000233	ENST00000467281		ChiTaRS3.1			BF765618	ARF5	chr7	127230161	+	ARF5	chr7	127231421	-
intron-3UTR	ENST00000467281	ENST00000000233		ChiTaRS3.1			BF765618	ARF5	chr7	127230161	+	ARF5	chr7	127231421	-
intron-intron	ENST00000467281	ENST00000467281		ChiTaRS3.1			BF765618	ARF5	chr7	127230161	+	ARF5	chr7	127231421	-
In-frame	ENST00000480820	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000480820	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000480820	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
5CDS-intron	ENST00000480820	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000295930	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000295930	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000295930	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
5CDS-intron	ENST00000295930	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000464171	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000464171	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000464171	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
5CDS-intron	ENST00000464171	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000312179	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000312179	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
In-frame	ENST00000312179	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
5CDS-intron	ENST00000312179	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000475278	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000475278	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000475278	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-intron	ENST00000475278	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000496268	ENST00000295598		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000496268	ENST00000537345		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3CDS	ENST00000496268	ENST00000369496		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-intron	ENST00000496268	ENST00000491156		ChiTaRS3.1			DB226918	RSRC1	chr3	158261244	+	ATP1A1	chr1	116929994	+
intron-3UTR	ENST00000337990	ENST00000216039		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-intron	ENST00000337990	ENST00000462610		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-3UTR	ENST00000545618	ENST00000216039		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-intron	ENST00000545618	ENST00000462610		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-3UTR	ENST00000447788	ENST00000216039		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-intron	ENST00000447788	ENST00000462610		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-3UTR	ENST00000374839	ENST00000216039		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-intron	ENST00000374839	ENST00000462610		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-3UTR	ENST00000488608	ENST00000216039		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-intron	ENST00000488608	ENST00000462610		ChiTaRS3.1			BI458628	ZC4H2	chrX	64246310	-	JOSD1	chr22	39083063	-
intron-3UTR	ENST00000490337	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
intron-3UTR	ENST00000389636	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
intron-3UTR	ENST00000471742	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
5UTR-3UTR	ENST00000302490	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
intron-3UTR	ENST00000389634	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
intron-3UTR	ENST00000497291	ENST00000301785		ChiTaRS3.1			DA412678	KCNAB1	chr3	156009181	+	HNRNPUL2	chr11	62480529	-
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY282400	KMT2A	chr11	118359130	+	MLLT3	chr9	20372886	-
5UTR-3CDS	ENST00000337852	ENST00000337852		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
5UTR-3CDS	ENST00000337852	ENST00000376687		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
5UTR-5UTR	ENST00000337852	ENST00000453214		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
5UTR-intron	ENST00000337852	ENST00000482260		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000376687	ENST00000337852		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000376687	ENST00000376687		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-5UTR	ENST00000376687	ENST00000453214		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-intron	ENST00000376687	ENST00000482260		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000453214	ENST00000337852		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000453214	ENST00000376687		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-5UTR	ENST00000453214	ENST00000453214		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-intron	ENST00000453214	ENST00000482260		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000482260	ENST00000337852		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-3CDS	ENST00000482260	ENST00000376687		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-5UTR	ENST00000482260	ENST00000453214		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
intron-intron	ENST00000482260	ENST00000482260		ChiTaRS3.1			L08238	SUV39H1	chrX	48554098	-	SUV39H1	chrX	48557345	+
5CDS-intron	ENST00000332180	ENST00000310301		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
5CDS-intron	ENST00000332180	ENST00000395969		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
5CDS-intron	ENST00000332180	ENST00000466017		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000310301		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000395969		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-intron	ENST00000547171	ENST00000466017		ChiTaRS3.1			AI332438	KIAA1033	chr12	105560683	-	VPS41	chr7	38829401	+
intron-3UTR	ENST00000392708	ENST00000378251		ChiTaRS3.1			CN404588	STT3A	chr11	125464195	+	LRRC47	chr1	3697243	-
intron-3UTR	ENST00000529196	ENST00000378251		ChiTaRS3.1			CN404588	STT3A	chr11	125464195	+	LRRC47	chr1	3697243	-
intron-3UTR	ENST00000531491	ENST00000378251		ChiTaRS3.1			CN404588	STT3A	chr11	125464195	+	LRRC47	chr1	3697243	-
intron-3UTR	ENST00000526364	ENST00000378251		ChiTaRS3.1			CN404588	STT3A	chr11	125464195	+	LRRC47	chr1	3697243	-
intron-intron	ENST00000337907	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000337907	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000337907	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000337907	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000337907	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000337907	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000377464	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400907	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000400908	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000476556	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000337907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000377464		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000400907		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000400908		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000476556		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
intron-intron	ENST00000460659	ENST00000460659		ChiTaRS3.1			AV762378	RERE	chr1	8670403	+	RERE	chr1	8663487	+
3UTR-3CDS	ENST00000263174	ENST00000263174		ChiTaRS3.1			BU176678	PALMD	chr1	100159844	-	PALMD	chr1	100154573	+
3UTR-3CDS	ENST00000263174	ENST00000605497		ChiTaRS3.1			BU176678	PALMD	chr1	100159844	-	PALMD	chr1	100154573	+
intron-3CDS	ENST00000605497	ENST00000263174		ChiTaRS3.1			BU176678	PALMD	chr1	100159844	-	PALMD	chr1	100154573	+
intron-3CDS	ENST00000605497	ENST00000605497		ChiTaRS3.1			BU176678	PALMD	chr1	100159844	-	PALMD	chr1	100154573	+
intron-3UTR	ENST00000269554	ENST00000269554		ChiTaRS3.1			BF991438	PIP4K2B	chr17	36924516	-	PIP4K2B	chr17	36924325	+
intron-intron	ENST00000269554	ENST00000311500		ChiTaRS3.1			BF991438	PIP4K2B	chr17	36924516	-	PIP4K2B	chr17	36924325	+
intron-3UTR	ENST00000311500	ENST00000269554		ChiTaRS3.1			BF991438	PIP4K2B	chr17	36924516	-	PIP4K2B	chr17	36924325	+
intron-intron	ENST00000311500	ENST00000311500		ChiTaRS3.1			BF991438	PIP4K2B	chr17	36924516	-	PIP4K2B	chr17	36924325	+
intron-intron	ENST00000381352	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000381352	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000381352	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000405154	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000405154	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000542865	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000542865	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000541490	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000541490	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000282884	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000282884	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000381352		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000538081	ENST00000405154		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000542865		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000538081	ENST00000541490		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000282884		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000538081		ChiTaRS3.1			AA856938	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
In-frame	ENST00000311117	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000311117	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000311117	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000311117	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000311117	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000311117	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-3CDS	ENST00000334914	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-5UTR	ENST00000334914	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-5UTR	ENST00000334914	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-5UTR	ENST00000334914	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-intron	ENST00000334914	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5UTR-intron	ENST00000334914	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
In-frame	ENST00000257745	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000257745	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000257745	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000257745	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000257745	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000257745	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
In-frame	ENST00000334877	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000334877	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000334877	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000334877	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000334877	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000334877	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
In-frame	ENST00000476671	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000476671	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000476671	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-5UTR	ENST00000476671	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000476671	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
5CDS-intron	ENST00000476671	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-3CDS	ENST00000480368	ENST00000311117		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-5UTR	ENST00000480368	ENST00000334914		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-5UTR	ENST00000480368	ENST00000257745		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-5UTR	ENST00000480368	ENST00000334877		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-intron	ENST00000480368	ENST00000476671		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-intron	ENST00000480368	ENST00000480368		ChiTaRS3.1			AA603058	KMT2E	chr7	104730648	-	KMT2E	chr7	104742520	-
intron-3CDS	ENST00000375759	ENST00000375759		ChiTaRS3.1			BE080998	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000375759	ENST00000471538		ChiTaRS3.1			BE080998	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-3CDS	ENST00000471538	ENST00000375759		ChiTaRS3.1			BE080998	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000471538	ENST00000471538		ChiTaRS3.1			BE080998	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000338488	ENST00000502732		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000367623		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000507173		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000511413		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000392043		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000408940		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000344730		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000512653		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000338488	ENST00000504405		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000502732		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000367623		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000507173		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000511413		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000392043		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000408940		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000344730		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000512653		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000395097	ENST00000504405		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000502732		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000367623		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000507173		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000511413		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000392043		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000408940		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000344730		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000512653		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000330847	ENST00000504405		ChiTaRS3.1			AA613618	NR4A3	chr9	102586956	+	ABL2	chr1	179172025	-
intron-intron	ENST00000442267	ENST00000442267		ChiTaRS3.1			CV414598	TBC1D9	chr4	141612140	+	TBC1D9	chr4	141611534	-
intron-3CDS	ENST00000521861	ENST00000521861		ChiTaRS3.1			AW965128	EIF3H	chr8	117658734	-	EIF3H	chr8	117671083	-
intron-3CDS	ENST00000521861	ENST00000276682		ChiTaRS3.1			AW965128	EIF3H	chr8	117658734	-	EIF3H	chr8	117671083	-
intron-3CDS	ENST00000276682	ENST00000521861		ChiTaRS3.1			AW965128	EIF3H	chr8	117658734	-	EIF3H	chr8	117671083	-
intron-3CDS	ENST00000276682	ENST00000276682		ChiTaRS3.1			AW965128	EIF3H	chr8	117658734	-	EIF3H	chr8	117671083	-
intron-intron	ENST00000343289	ENST00000343289		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000343289	ENST00000404739		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000343289	ENST00000369857		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000343289	ENST00000423468		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000343289	ENST00000470299		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000404739	ENST00000343289		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000404739	ENST00000404739		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000404739	ENST00000369857		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000404739	ENST00000423468		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000404739	ENST00000470299		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000369857	ENST00000343289		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000369857	ENST00000404739		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000369857	ENST00000369857		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000369857	ENST00000423468		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000369857	ENST00000470299		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000423468	ENST00000343289		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000423468	ENST00000404739		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000423468	ENST00000369857		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000423468	ENST00000423468		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000423468	ENST00000470299		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000470299	ENST00000343289		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000470299	ENST00000404739		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000470299	ENST00000369857		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000470299	ENST00000423468		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000470299	ENST00000470299		ChiTaRS3.1			AW008648	NT5C2	chr10	104953024	+	NT5C2	chr10	104952664	-
intron-intron	ENST00000395146	ENST00000395146		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000395146	ENST00000307808		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000395146	ENST00000544085		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000395146	ENST00000511996		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000307808	ENST00000395146		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000307808	ENST00000307808		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000307808	ENST00000544085		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000307808	ENST00000511996		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000544085	ENST00000395146		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000544085	ENST00000307808		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000544085	ENST00000544085		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000544085	ENST00000511996		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000511996	ENST00000395146		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000511996	ENST00000307808		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000511996	ENST00000544085		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000511996	ENST00000511996		ChiTaRS3.1			BF356988	AFF1	chr4	87889865	-	AFF1	chr4	87915874	-
intron-intron	ENST00000280379	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000280379	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000280379	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393632	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393632	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393632	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393630	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393630	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393630	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000546600	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000546600	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000546600	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552738	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552738	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552738	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393629	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393629	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000393629	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552115	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552115	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000552115	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
5CDS-intron	ENST00000549378	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
5CDS-intron	ENST00000549378	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
5CDS-intron	ENST00000549378	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000551397	ENST00000431982		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000551397	ENST00000413573		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-intron	ENST00000551397	ENST00000252037		ChiTaRS3.1			BC111488	MON2	chr12	62902925	+	FKBP6	chr7	72615306	+
intron-3CDS	ENST00000398073	ENST00000313640		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000398073	ENST00000313624		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000398073	ENST00000398762		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000398073	ENST00000476830		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000313640		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000313624		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000548823	ENST00000398762		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000548823	ENST00000476830		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000313640		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000313624		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-3CDS	ENST00000547701	ENST00000398762		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
intron-5UTR	ENST00000547701	ENST00000476830		ChiTaRS3.1			CB053218	CTDSP2	chr12	58213895	+	EPSTI1	chr13	43500498	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BG427318	MALAT1	chr11	65272000	+	MALAT1	chr11	65266558	+
intron-intron	ENST00000442544	ENST00000442544		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000442544	ENST00000412726		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000442544	ENST00000581580		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000442544	ENST00000580146		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000412726	ENST00000442544		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000412726	ENST00000412726		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000412726	ENST00000581580		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000412726	ENST00000580146		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000581580	ENST00000442544		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000581580	ENST00000412726		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000581580	ENST00000581580		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000581580	ENST00000580146		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000580146	ENST00000442544		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000580146	ENST00000412726		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000580146	ENST00000581580		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
intron-intron	ENST00000580146	ENST00000580146		ChiTaRS3.1			AA740208	DCC	chr18	51058713	+	DCC	chr18	51058643	-
3UTR-5UTR	ENST00000423278	ENST00000566620		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000268613		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000565636		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000431540		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-5UTR	ENST00000423278	ENST00000428848		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000567445		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000446376		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-intron	ENST00000423278	ENST00000569454		ChiTaRS3.1			U59288	MIAT	chr22	27070719	+	CDH13	chr16	82660633	+
3UTR-3UTR	ENST00000306107	ENST00000306107		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-3UTR	ENST00000306107	ENST00000472644		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000306107	ENST00000481337		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000306107	ENST00000486979		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000306107	ENST00000389927		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-3UTR	ENST00000472644	ENST00000306107		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-3UTR	ENST00000472644	ENST00000472644		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000472644	ENST00000481337		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000472644	ENST00000486979		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
3UTR-intron	ENST00000472644	ENST00000389927		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000481337	ENST00000306107		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000481337	ENST00000472644		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000481337	ENST00000481337		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000481337	ENST00000486979		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000481337	ENST00000389927		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000486979	ENST00000306107		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000486979	ENST00000472644		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000486979	ENST00000481337		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000486979	ENST00000486979		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000486979	ENST00000389927		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000389927	ENST00000306107		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-3UTR	ENST00000389927	ENST00000472644		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000389927	ENST00000481337		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000389927	ENST00000486979		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
intron-intron	ENST00000389927	ENST00000389927		ChiTaRS3.1			CN478968	ALCAM	chr3	105295559	-	ALCAM	chr3	105295480	+
Frame-shit	ENST00000346916	ENST00000346916		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000346916	ENST00000545507		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000346916	ENST00000333511		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000346916	ENST00000353555		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
5CDS-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000545507	ENST00000346916		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000545507	ENST00000545507		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000545507	ENST00000333511		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000545507	ENST00000353555		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
5CDS-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000333511	ENST00000346916		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000333511	ENST00000545507		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000333511	ENST00000333511		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000333511	ENST00000353555		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
5CDS-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000353555	ENST00000346916		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000353555	ENST00000545507		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000353555	ENST00000333511		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
Frame-shit	ENST00000353555	ENST00000353555		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
5CDS-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
intron-3CDS	ENST00000574970	ENST00000346916		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
intron-3CDS	ENST00000574970	ENST00000545507		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
intron-3CDS	ENST00000574970	ENST00000333511		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
intron-3CDS	ENST00000574970	ENST00000353555		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			BM706468	BSG	chr19	581372	-	BSG	chr19	581435	+
In-frame	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
In-frame	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3CDS	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
5UTR-3UTR	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3CDS	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3UTR	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF177238	AFF1	chr4	88005317	+	KMT2A	chr11	118354896	+
intron-3UTR	ENST00000228825	ENST00000288699		ChiTaRS3.1			DA735098	ARPC3	chr12	110874703	-	DPYSL5	chr2	27170959	+
intron-intron	ENST00000228825	ENST00000401478		ChiTaRS3.1			DA735098	ARPC3	chr12	110874703	-	DPYSL5	chr2	27170959	+
intron-3UTR	ENST00000471641	ENST00000288699		ChiTaRS3.1			DA735098	ARPC3	chr12	110874703	-	DPYSL5	chr2	27170959	+
intron-intron	ENST00000471641	ENST00000401478		ChiTaRS3.1			DA735098	ARPC3	chr12	110874703	-	DPYSL5	chr2	27170959	+
3UTR-3UTR	ENST00000369817	ENST00000420195		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000369817	ENST00000413977		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000369817	ENST00000436602		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
intron-3UTR	ENST00000479366	ENST00000420195		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
intron-intron	ENST00000479366	ENST00000413977		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
intron-intron	ENST00000479366	ENST00000436602		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-3UTR	ENST00000424325	ENST00000420195		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000424325	ENST00000413977		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000424325	ENST00000436602		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-3UTR	ENST00000406022	ENST00000420195		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000406022	ENST00000413977		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
3UTR-intron	ENST00000406022	ENST00000436602		ChiTaRS3.1			CA944668	RPL10	chrX	153629197	-	SH3BP5-AS1	chr3	15296982	+
intron-3CDS	ENST00000234296	ENST00000234296		ChiTaRS3.1			BQ335248	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-5UTR	ENST00000234296	ENST00000467605		ChiTaRS3.1			BQ335248	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-3CDS	ENST00000467605	ENST00000234296		ChiTaRS3.1			BQ335248	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-5UTR	ENST00000467605	ENST00000467605		ChiTaRS3.1			BQ335248	ORC2	chr2	201806002	+	ORC2	chr2	201814355	-
intron-5UTR	ENST00000378618	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000378618	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000378618	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000536126	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000536126	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000536126	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000278460	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000278460	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000278460	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000395460	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000395460	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000395460	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000378615	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000378615	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000378615	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000543718	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000543718	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000543718	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000527268	ENST00000348943		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-5UTR	ENST00000527268	ENST00000325495		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
intron-intron	ENST00000527268	ENST00000602219		ChiTaRS3.1			AW167588	C11orf49	chr11	47186054	+	HNRNPM	chr19	8509879	+
3UTR-3CDS	ENST00000370986	ENST00000359204		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
3UTR-intron	ENST00000370986	ENST00000460752		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
3UTR-intron	ENST00000370986	ENST00000536233		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
3UTR-intron	ENST00000370986	ENST00000371430		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
3UTR-intron	ENST00000370986	ENST00000394100		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-3CDS	ENST00000370985	ENST00000359204		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000370985	ENST00000460752		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000370985	ENST00000536233		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000370985	ENST00000371430		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000370985	ENST00000394100		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-3CDS	ENST00000460575	ENST00000359204		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000460575	ENST00000460752		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000460575	ENST00000536233		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000460575	ENST00000371430		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000460575	ENST00000394100		ChiTaRS3.1			BM718128	GADD45A	chr1	68153708	+	FRA10AC1	chr10	95441337	-
intron-intron	ENST00000360079	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000360079	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000402580	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000402580	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000428575	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000428575	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000359308	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000359308	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000405878	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000405878	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000405506	ENST00000329967		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-intron	ENST00000405506	ENST00000347067		ChiTaRS3.1			AK124078	XRCC6	chr22	42056897	+	SIVA1	chr14	105224940	+
intron-3UTR	ENST00000607772	ENST00000353258		ChiTaRS3.1			BQ360698	CNKSR3	chr6	154693997	+	GDE1	chr16	19513902	-
intron-3UTR	ENST00000479339	ENST00000353258		ChiTaRS3.1			BQ360698	CNKSR3	chr6	154693997	+	GDE1	chr16	19513902	-
intron-3UTR	ENST00000433165	ENST00000353258		ChiTaRS3.1			BQ360698	CNKSR3	chr6	154693997	+	GDE1	chr16	19513902	-
intron-3CDS	ENST00000360586	ENST00000360586		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000360586	ENST00000420358		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000360586	ENST00000359167		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000360586	ENST00000421192		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000420358	ENST00000360586		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000420358	ENST00000420358		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000420358	ENST00000359167		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000420358	ENST00000421192		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000359167	ENST00000360586		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000359167	ENST00000420358		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000359167	ENST00000359167		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000359167	ENST00000421192		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000421192	ENST00000360586		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-3CDS	ENST00000421192	ENST00000420358		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000421192	ENST00000359167		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
intron-intron	ENST00000421192	ENST00000421192		ChiTaRS3.1			BM478508	WDHD1	chr14	55457970	+	WDHD1	chr14	55455885	-
5UTR-3CDS	ENST00000474528	ENST00000216044		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
5UTR-3UTR	ENST00000474528	ENST00000460605		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
Frame-shit	ENST00000272433	ENST00000216044		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
5CDS-3UTR	ENST00000272433	ENST00000460605		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
Frame-shit	ENST00000410065	ENST00000216044		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
5CDS-3UTR	ENST00000410065	ENST00000460605		ChiTaRS3.1			CV322428	SFXN5	chr2	73249650	-	GTPBP1	chr22	39122358	-
3UTR-3UTR	ENST00000229239	ENST00000504595		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000229239	ENST00000510662		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000229239	ENST00000329673		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-3UTR	ENST00000396856	ENST00000504595		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396856	ENST00000510662		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396856	ENST00000329673		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-3UTR	ENST00000396861	ENST00000504595		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396861	ENST00000510662		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396861	ENST00000329673		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-3UTR	ENST00000396859	ENST00000504595		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396859	ENST00000510662		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396859	ENST00000329673		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-3UTR	ENST00000396858	ENST00000504595		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396858	ENST00000510662		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
3UTR-intron	ENST00000396858	ENST00000329673		ChiTaRS3.1			BQ671968	GAPDH	chr12	6647431	-	FBXL7	chr5	15937518	+
intron-3CDS	ENST00000464233	ENST00000297438		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000464233	ENST00000451899		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-intron	ENST00000464233	ENST00000520659		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000436010	ENST00000297438		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000436010	ENST00000451899		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-intron	ENST00000436010	ENST00000520659		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000495273	ENST00000297438		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000495273	ENST00000451899		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-intron	ENST00000495273	ENST00000520659		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000467549	ENST00000297438		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000467549	ENST00000451899		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-intron	ENST00000467549	ENST00000520659		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000466906	ENST00000297438		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3CDS	ENST00000466906	ENST00000451899		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-intron	ENST00000466906	ENST00000520659		ChiTaRS3.1			BF959308	ROBO1	chr3	79203779	-	OSGIN2	chr8	90937095	+
intron-3UTR	ENST00000263408	ENST00000361905		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000263408	ENST00000527636		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000263408	ENST00000527575		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000263408	ENST00000334310		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000263408	ENST00000361985		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000263408	ENST00000526600		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000509186	ENST00000361905		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000509186	ENST00000527636		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000509186	ENST00000527575		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-intron	ENST00000509186	ENST00000334310		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000509186	ENST00000361985		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000509186	ENST00000526600		ChiTaRS3.1			BF990638	C9	chr5	39301401	+	TEAD1	chr11	12961792	-
intron-3UTR	ENST00000393158	ENST00000339852		ChiTaRS3.1			AK025378	PDGFD	chr11	103791147	-	NCCRP1	chr19	39692193	+
intron-3UTR	ENST00000302251	ENST00000339852		ChiTaRS3.1			AK025378	PDGFD	chr11	103791147	-	NCCRP1	chr19	39692193	+
3UTR-3CDS	ENST00000531028	ENST00000310054		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000531028	ENST00000542619		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000278559	ENST00000310054		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000278559	ENST00000542619		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000529629	ENST00000310054		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000529629	ENST00000542619		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000456580	ENST00000310054		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
3UTR-3CDS	ENST00000456580	ENST00000542619		ChiTaRS3.1			BF878278	CAPN5	chr11	76834949	-	CYP2S1	chr19	41712245	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AY748448	IGHG1	chr14	106095338	-	IGHG1	chr14	106322325	-
intron-3CDS	ENST00000331204	ENST00000356951		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-3CDS	ENST00000331204	ENST00000298510		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-intron	ENST00000331204	ENST00000494433		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-3CDS	ENST00000505490	ENST00000356951		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-3CDS	ENST00000505490	ENST00000298510		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-intron	ENST00000505490	ENST00000494433		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-3CDS	ENST00000512673	ENST00000356951		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-3CDS	ENST00000512673	ENST00000298510		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-intron	ENST00000512673	ENST00000494433		ChiTaRS3.1			BC008038	ALYREF	chr17	79846447	+	PRDX3	chr10	120938302	-
intron-intron	ENST00000395795	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000395795	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395795	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395795	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395795	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395795	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395795	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000374429	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374429	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000395793	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395793	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000374426	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000374426	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000343575	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000343575	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000395794	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000395794	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000395795		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-3UTR	ENST00000496375	ENST00000374429		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000395793		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000374426		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000343575		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000395794		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000496375	ENST00000496375		ChiTaRS3.1			AA678668	CXCL12	chr10	44865816	+	CXCL12	chr10	44865839	-
intron-intron	ENST00000308158	ENST00000426559		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000308158	ENST00000455785		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000308158	ENST00000399728		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-5UTR	ENST00000308158	ENST00000465604		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000308158	ENST00000357865		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000308158	ENST00000374291		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000481811	ENST00000426559		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000481811	ENST00000455785		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000481811	ENST00000399728		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-5UTR	ENST00000481811	ENST00000465604		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000481811	ENST00000357865		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000481811	ENST00000374291		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000476170	ENST00000426559		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000476170	ENST00000455785		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000476170	ENST00000399728		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-5UTR	ENST00000476170	ENST00000465604		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000476170	ENST00000357865		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-intron	ENST00000476170	ENST00000374291		ChiTaRS3.1			AK123488	PHYKPL	chr5	177653443	-	STMN1	chr1	26228239	-
intron-3UTR	ENST00000331925	ENST00000371817		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-intron	ENST00000331925	ENST00000464187		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-3UTR	ENST00000573283	ENST00000371817		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-intron	ENST00000573283	ENST00000464187		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-3UTR	ENST00000575842	ENST00000371817		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-intron	ENST00000575842	ENST00000464187		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-3UTR	ENST00000575087	ENST00000371817		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-intron	ENST00000575087	ENST00000464187		ChiTaRS3.1			CN257578	ACTG1	chr17	79477326	+	COL5A1	chr9	137736335	+
intron-intron	ENST00000284637	ENST00000393799		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000530427		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000393800		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000534534		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000524845		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000265637		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000524904		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000393801		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000265636		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000529710		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000284637	ENST00000527403		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000393799		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000530427		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000393800		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000534534		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000524845		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000265637		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000524904		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000393801		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000265636		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000529710		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000508685	ENST00000527403		ChiTaRS3.1			BF336568	SH3RF1	chr4	170146287	+	PPP6R3	chr11	68262357	+
intron-intron	ENST00000262570	ENST00000262570		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000262570	ENST00000448878		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000262570	ENST00000476546		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000262570	ENST00000542753		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000448878	ENST00000262570		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000448878	ENST00000448878		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000448878	ENST00000476546		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000448878	ENST00000542753		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000476546	ENST00000262570		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000476546	ENST00000448878		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000476546	ENST00000476546		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000476546	ENST00000542753		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000542753	ENST00000262570		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000542753	ENST00000448878		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000542753	ENST00000476546		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000542753	ENST00000542753		ChiTaRS3.1			BE061868	CHCHD3	chr7	132649704	+	CHCHD3	chr7	132649579	-
intron-intron	ENST00000376065	ENST00000285039		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376065	ENST00000324581		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376065	ENST00000592688		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376065	ENST00000587895		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376052	ENST00000285039		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376052	ENST00000324581		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376052	ENST00000592688		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000376052	ENST00000587895		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000466153	ENST00000285039		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000466153	ENST00000324581		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000466153	ENST00000592688		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000466153	ENST00000587895		ChiTaRS3.1			BF996738	TPP2	chr13	103278434	+	MYO5B	chr18	47519516	+
intron-intron	ENST00000394434	ENST00000539642		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000394434	ENST00000164305		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000394434	ENST00000569909		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000545646	ENST00000539642		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000545646	ENST00000164305		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000545646	ENST00000569909		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000274562	ENST00000539642		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000274562	ENST00000164305		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000274562	ENST00000569909		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000510191	ENST00000539642		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000510191	ENST00000164305		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000510191	ENST00000569909		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000511505	ENST00000539642		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000511505	ENST00000164305		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000511505	ENST00000569909		ChiTaRS3.1			BF352298	LARS	chr5	145500047	-	PIGB	chr15	55638405	-
intron-intron	ENST00000350061	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000350061	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000350061	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000350061	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000288139	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000288139	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000288139	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000288139	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000422281	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000422281	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000422281	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000422281	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000498251	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000498251	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000498251	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000498251	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000540742	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000540742	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000540742	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000540742	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000544977	ENST00000372966		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000544977	ENST00000372964		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000544977	ENST00000217885		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
intron-intron	ENST00000544977	ENST00000372960		ChiTaRS3.1			BF755778	CACNA1D	chr3	53617676	+	NOX1	chrX	100110588	-
3UTR-intron	ENST00000254976	ENST00000462484		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000254976	ENST00000334856		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000254976	ENST00000460843		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000254976	ENST00000371394		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000304886	ENST00000462484		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000304886	ENST00000334856		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000304886	ENST00000460843		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000304886	ENST00000371394		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000495883	ENST00000462484		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000495883	ENST00000334856		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000495883	ENST00000460843		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
3UTR-intron	ENST00000495883	ENST00000371394		ChiTaRS3.1			AW900408	SNAP25	chr20	10287795	-	EHMT1	chr9	140514361	-
intron-3CDS	ENST00000261182	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000261182	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000261182	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000261182	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000261182	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000261182	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000261182	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000261182	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000261182	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000261182	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000261182	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000393263	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000393263	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000393263	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000393263	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000393263	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000393263	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000393263	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000393263	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000393263	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000393263	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000393263	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000431879	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000431879	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000431879	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000431879	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000431879	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000431879	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000431879	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000431879	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000431879	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000431879	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000431879	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000547773	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000547773	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547773	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547773	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547773	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547773	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547773	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547773	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547773	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547773	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547773	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000544816	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000544816	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000544816	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000544816	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000544816	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000544816	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000544816	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000544816	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000544816	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000544816	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000544816	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000542344	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000542344	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000542344	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000542344	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000542344	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000542344	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000542344	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000542344	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000542344	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000542344	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000542344	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000535020	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000535020	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000535020	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000535020	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000535020	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000535020	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000535020	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000535020	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000535020	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000535020	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000535020	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000549596	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000549596	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000549596	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000549596	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000549596	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000549596	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000549596	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000549596	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000549596	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000549596	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000549596	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000547993	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000547993	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547993	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547993	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547993	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547993	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547993	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000547993	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547993	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547993	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000547993	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000552342	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000552342	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000552342	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000552342	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000552342	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000552342	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000552342	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000552342	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000552342	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000552342	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000552342	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000548044	ENST00000261182		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000548044	ENST00000393263		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000548044	ENST00000431879		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000548044	ENST00000547773		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000548044	ENST00000544816		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000548044	ENST00000542344		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000548044	ENST00000535020		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-5UTR	ENST00000548044	ENST00000549596		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000548044	ENST00000547993		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000548044	ENST00000552342		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-intron	ENST00000548044	ENST00000548044		ChiTaRS3.1			CA420158	NAP1L1	chr12	76454026	+	NAP1L1	chr12	76453660	-
intron-3CDS	ENST00000368682	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368682	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368682	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000354650	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000354650	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000354650	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229471	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229471	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229471	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368667	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368667	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368667	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368678	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368678	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000368678	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229470	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229470	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000229470	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000356013	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000356013	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000356013	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000538466	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000538466	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000538466	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000476769	ENST00000398599		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000476769	ENST00000221992		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000476769	ENST00000405816		ChiTaRS3.1			AW844098	FYN	chr6	112073071	-	CEACAM5	chr19	42224927	-
intron-3CDS	ENST00000225964	ENST00000339514		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-3CDS	ENST00000225964	ENST00000392318		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-3CDS	ENST00000225964	ENST00000304164		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-3CDS	ENST00000225964	ENST00000392316		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-intron	ENST00000225964	ENST00000439065		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-intron	ENST00000225964	ENST00000496992		ChiTaRS3.1			AI367808	COL1A1	chr17	48262803	+	MYO1B	chr2	192252169	-
intron-intron	ENST00000430069	ENST00000259486		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000430069	ENST00000427067		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000430069	ENST00000522167		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000430069	ENST00000522826		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000430069	ENST00000075322		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000430069	ENST00000518109		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000259486		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000427067		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000522167		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000522826		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000075322		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
intron-intron	ENST00000457928	ENST00000518109		ChiTaRS3.1			AK022268	TBL1XR1	chr3	176902489	-	ENPP2	chr8	120643871	-
3UTR-3UTR	ENST00000327827	ENST00000356341		ChiTaRS3.1			BM720598	C16orf72	chr16	9211423	+	PAK1	chr11	77033744	-
3UTR-3UTR	ENST00000327827	ENST00000530617		ChiTaRS3.1			BM720598	C16orf72	chr16	9211423	+	PAK1	chr11	77033744	-
3UTR-intron	ENST00000327827	ENST00000278568		ChiTaRS3.1			BM720598	C16orf72	chr16	9211423	+	PAK1	chr11	77033744	-
3UTR-intron	ENST00000327827	ENST00000528203		ChiTaRS3.1			BM720598	C16orf72	chr16	9211423	+	PAK1	chr11	77033744	-
3UTR-intron	ENST00000327827	ENST00000525542		ChiTaRS3.1			BM720598	C16orf72	chr16	9211423	+	PAK1	chr11	77033744	-
intron-intron	ENST00000221249	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000221249	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000221249	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000221249	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000221249	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000221249	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000545201	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000414982	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000450331	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000600737	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000221249		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000545201		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000414982		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000450331		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000600737		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
intron-intron	ENST00000594864	ENST00000594864		ChiTaRS3.1			BF846178	PNPLA6	chr19	7618173	+	PNPLA6	chr19	7616962	+
3UTR-3UTR	ENST00000307845	ENST00000307845		ChiTaRS3.1			AW089688	HPCAL1	chr2	10567657	-	HPCAL1	chr2	10567607	+
3UTR-3UTR	ENST00000307845	ENST00000381765		ChiTaRS3.1			AW089688	HPCAL1	chr2	10567657	-	HPCAL1	chr2	10567607	+
3UTR-3UTR	ENST00000381765	ENST00000307845		ChiTaRS3.1			AW089688	HPCAL1	chr2	10567657	-	HPCAL1	chr2	10567607	+
3UTR-3UTR	ENST00000381765	ENST00000381765		ChiTaRS3.1			AW089688	HPCAL1	chr2	10567657	-	HPCAL1	chr2	10567607	+
5CDS-3UTR	ENST00000426496	ENST00000282120		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000426496	ENST00000377386		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000426496	ENST00000398263		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000426496	ENST00000409232		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000426496	ENST00000409015		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000426496	ENST00000444342		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000392078	ENST00000282120		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000392078	ENST00000377386		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000392078	ENST00000398263		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000392078	ENST00000409232		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000392078	ENST00000409015		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000392078	ENST00000444342		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-3UTR	ENST00000476522	ENST00000282120		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-3UTR	ENST00000476522	ENST00000377386		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-3UTR	ENST00000476522	ENST00000398263		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-intron	ENST00000476522	ENST00000409232		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-intron	ENST00000476522	ENST00000409015		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-intron	ENST00000476522	ENST00000444342		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000367742	ENST00000282120		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000367742	ENST00000377386		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000367742	ENST00000398263		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000367742	ENST00000409232		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000367742	ENST00000409015		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000367742	ENST00000444342		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000338920	ENST00000282120		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000338920	ENST00000377386		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-3UTR	ENST00000338920	ENST00000398263		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000338920	ENST00000409232		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000338920	ENST00000409015		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
5CDS-intron	ENST00000338920	ENST00000444342		ChiTaRS3.1			BI020978	PRRC2C	chr1	171526604	+	TGOLN2	chr2	85548033	+
intron-intron	ENST00000358151	ENST00000439211		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000358151	ENST00000505337		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000358151	ENST00000511032		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000358151	ENST00000504396		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000358151	ENST00000513048		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000355824	ENST00000439211		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000355824	ENST00000505337		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000355824	ENST00000511032		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000355824	ENST00000504396		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000355824	ENST00000513048		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000309235	ENST00000439211		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000309235	ENST00000505337		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000309235	ENST00000511032		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000309235	ENST00000504396		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000309235	ENST00000513048		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000374374	ENST00000439211		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000374374	ENST00000505337		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000374374	ENST00000511032		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000374374	ENST00000504396		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-intron	ENST00000374374	ENST00000513048		ChiTaRS3.1			AK123238	ZNF483	chr9	114311891	+	DHFR	chr5	79946866	-
intron-3CDS	ENST00000252593	ENST00000252593		ChiTaRS3.1			BE826138	BST2	chr19	17514963	+	BST2	chr19	17515222	-
intron-intron	ENST00000252593	ENST00000527220		ChiTaRS3.1			BE826138	BST2	chr19	17514963	+	BST2	chr19	17515222	-
intron-3CDS	ENST00000527220	ENST00000252593		ChiTaRS3.1			BE826138	BST2	chr19	17514963	+	BST2	chr19	17515222	-
intron-intron	ENST00000527220	ENST00000527220		ChiTaRS3.1			BE826138	BST2	chr19	17514963	+	BST2	chr19	17515222	-
3UTR-3UTR	ENST00000448841	ENST00000448841		ChiTaRS3.1			CB321878	WBP1L	chr10	104575849	-	WBP1L	chr10	104575798	+
3UTR-3UTR	ENST00000448841	ENST00000369889		ChiTaRS3.1			CB321878	WBP1L	chr10	104575849	-	WBP1L	chr10	104575798	+
3UTR-3UTR	ENST00000369889	ENST00000448841		ChiTaRS3.1			CB321878	WBP1L	chr10	104575849	-	WBP1L	chr10	104575798	+
3UTR-3UTR	ENST00000369889	ENST00000369889		ChiTaRS3.1			CB321878	WBP1L	chr10	104575849	-	WBP1L	chr10	104575798	+
intron-intron	ENST00000281038	ENST00000308488		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000281038	ENST00000360355		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000281038	ENST00000480887		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000281038	ENST00000530604		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000528850	ENST00000308488		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000528850	ENST00000360355		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000528850	ENST00000480887		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
intron-intron	ENST00000528850	ENST00000530604		ChiTaRS3.1			BF947498	NARS2	chr11	78240831	+	RSF1	chr11	77416392	-
5CDS-intron	ENST00000392708	ENST00000368309		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
5CDS-intron	ENST00000392708	ENST00000472638		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
5CDS-intron	ENST00000529196	ENST00000368309		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
5CDS-intron	ENST00000529196	ENST00000472638		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
5CDS-intron	ENST00000531491	ENST00000368309		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
5CDS-intron	ENST00000531491	ENST00000472638		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
intron-intron	ENST00000526364	ENST00000368309		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
intron-intron	ENST00000526364	ENST00000472638		ChiTaRS3.1			BE837748	STT3A	chr11	125475574	+	UBQLN4	chr1	156013479	-
Frame-shit	ENST00000273221	ENST00000503431		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
In-frame	ENST00000273221	ENST00000284440		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
5CDS-intron	ENST00000273221	ENST00000504818		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
5CDS-intron	ENST00000273221	ENST00000508768		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
5CDS-intron	ENST00000273221	ENST00000512788		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
intron-3CDS	ENST00000473088	ENST00000503431		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
intron-3CDS	ENST00000473088	ENST00000284440		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
intron-intron	ENST00000473088	ENST00000504818		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
intron-intron	ENST00000473088	ENST00000508768		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
intron-intron	ENST00000473088	ENST00000512788		ChiTaRS3.1			CK023998	IQSEC1	chr3	12938718	-	UCHL1	chr4	41270053	+
5CDS-intron	ENST00000378623	ENST00000267485		ChiTaRS3.1			BC110808	LRP4	chr11	46920112	-	C14orf37	chr14	58727700	+
5CDS-intron	ENST00000378623	ENST00000334342		ChiTaRS3.1			BC110808	LRP4	chr11	46920112	-	C14orf37	chr14	58727700	+
intron-3CDS	ENST00000462138	ENST00000462138		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-intron	ENST00000462138	ENST00000423525		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000462138	ENST00000461139		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000462138	ENST00000423516		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000462138	ENST00000296289		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-3CDS	ENST00000423525	ENST00000462138		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-intron	ENST00000423525	ENST00000423525		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423525	ENST00000461139		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423525	ENST00000423516		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423525	ENST00000296289		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-3CDS	ENST00000461139	ENST00000462138		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-intron	ENST00000461139	ENST00000423525		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000461139	ENST00000461139		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000461139	ENST00000423516		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000461139	ENST00000296289		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-3CDS	ENST00000423516	ENST00000462138		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-intron	ENST00000423516	ENST00000423525		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423516	ENST00000461139		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423516	ENST00000423516		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000423516	ENST00000296289		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-3CDS	ENST00000296289	ENST00000462138		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-intron	ENST00000296289	ENST00000423525		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000296289	ENST00000461139		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000296289	ENST00000423516		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
intron-5UTR	ENST00000296289	ENST00000296289		ChiTaRS3.1			BI094438	TKT	chr3	53259813	+	TKT	chr3	53259771	-
3UTR-3UTR	ENST00000370283	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370283	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000547204	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000547204	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000519604	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000519604	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000519273	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000519273	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370275	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370275	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000353546	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000353546	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000518794	ENST00000370283		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000547204		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000519604		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000519273		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000518794	ENST00000370275		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000353546		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000518794		ChiTaRS3.1			AA402828	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
5CDS-intron	ENST00000352131	ENST00000352131		ChiTaRS3.1			BQ189198	RFC2	chr7	73654267	-	RFC2	chr7	73661096	-
5CDS-intron	ENST00000352131	ENST00000055077		ChiTaRS3.1			BQ189198	RFC2	chr7	73654267	-	RFC2	chr7	73661096	-
5CDS-intron	ENST00000055077	ENST00000352131		ChiTaRS3.1			BQ189198	RFC2	chr7	73654267	-	RFC2	chr7	73661096	-
5CDS-intron	ENST00000055077	ENST00000055077		ChiTaRS3.1			BQ189198	RFC2	chr7	73654267	-	RFC2	chr7	73661096	-
intron-intron	ENST00000540753	ENST00000313949		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371098		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371075		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371100		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371099		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371102		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000464624		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000306120		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371095		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371085		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000354359		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000265620		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000306090		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000540753	ENST00000371081		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000313949		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371098		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371075		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371100		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371099		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371102		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000464624		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000306120		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371095		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371085		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000354359		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000265620		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000306090		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000223423	ENST00000371081		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000313949		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371098		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371075		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371100		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371099		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371102		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000464624		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000306120		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371095		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371085		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000354359		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000265620		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000306090		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-intron	ENST00000362012	ENST00000371081		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000313949		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371098		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371075		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371100		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371099		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371102		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000464624		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000306120		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371095		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371085		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000354359		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000265620		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000306090		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
intron-intron	ENST00000373698	ENST00000371081		ChiTaRS3.1			AA773408	PTGS1	chr9	125155344	+	GNAS	chr20	57470930	+
3UTR-3UTR	ENST00000399302	ENST00000399302		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
3UTR-intron	ENST00000399302	ENST00000527250		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
3UTR-intron	ENST00000399302	ENST00000527788		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-3UTR	ENST00000527250	ENST00000399302		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-intron	ENST00000527250	ENST00000527250		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-intron	ENST00000527250	ENST00000527788		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-3UTR	ENST00000527788	ENST00000399302		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-intron	ENST00000527788	ENST00000527250		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-intron	ENST00000527788	ENST00000527788		ChiTaRS3.1			BG029448	QSER1	chr11	32999163	-	QSER1	chr11	32999215	+
intron-3UTR	ENST00000283429	ENST00000217130		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000283429	ENST00000450537		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000283429	ENST00000369888		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574733	ENST00000217130		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574733	ENST00000450537		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574733	ENST00000369888		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000404295	ENST00000217130		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000404295	ENST00000450537		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000404295	ENST00000369888		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574425	ENST00000217130		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574425	ENST00000450537		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000574425	ENST00000369888		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000572391	ENST00000217130		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000572391	ENST00000450537		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3UTR	ENST00000572391	ENST00000369888		ChiTaRS3.1			BF772168	NMRAL1	chr16	4511836	-	ZNF512B	chr20	62590877	-
intron-3CDS	ENST00000396402	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396402	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396402	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396402	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000396402	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000260433	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000260433	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000260433	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000260433	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000260433	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396404	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396404	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396404	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000396404	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000396404	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000559878	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000559878	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000559878	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000559878	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000559878	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000405913	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000405913	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000405913	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000405913	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000405913	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000557858	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000557858	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000557858	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000557858	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000557858	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000492852	ENST00000426333		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000492852	ENST00000592576		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000492852	ENST00000591382		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-3CDS	ENST00000492852	ENST00000402521		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
intron-intron	ENST00000492852	ENST00000589211		ChiTaRS3.1			CV359808	CYP19A1	chr15	51630244	-	EFTUD2	chr17	42953384	+
5CDS-3UTR	ENST00000433861	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000433861	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000433861	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-3UTR	ENST00000424362	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000424362	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000424362	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-3UTR	ENST00000383829	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000383829	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000383829	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-3UTR	ENST00000302054	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000302054	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000302054	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-3UTR	ENST00000457855	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000457855	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
5CDS-intron	ENST00000457855	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
intron-3UTR	ENST00000469066	ENST00000355264		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
intron-intron	ENST00000469066	ENST00000372745		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
intron-intron	ENST00000469066	ENST00000487653		ChiTaRS3.1			BE082848	BRPF1	chr3	9776286	+	AP3M1	chr10	75882158	+
intron-3CDS	ENST00000454682	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000454682	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000454682	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000454682	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000454682	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000454682	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000454682	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000550952	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000550952	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000550952	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000550952	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000550952	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000550952	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000550952	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000356769	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000356769	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000356769	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000356769	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000356769	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000356769	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000356769	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000552540	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000552540	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000552540	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000552540	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000552540	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000552540	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000552540	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000393891	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000393891	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000393891	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000393891	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000393891	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000393891	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000393891	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000548563	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000548563	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000548563	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000548563	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000548563	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000548563	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000548563	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000546392	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000546392	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000546392	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000546392	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000546392	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000546392	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000546392	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000551793	ENST00000506722		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000551793	ENST00000394537		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000551793	ENST00000357077		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000551793	ENST00000264366		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000551793	ENST00000509550		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000551793	ENST00000510275		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-intron	ENST00000551793	ENST00000504887		ChiTaRS3.1			F00928	NACA	chr12	57111771	-	ANK2	chr4	114120242	-
intron-3CDS	ENST00000392514	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000392514	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000392514	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000392514	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000551150	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000551150	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000551150	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000551150	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000552292	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000552292	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000552292	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000552292	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000313104	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000313104	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000313104	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000313104	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000546989	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000546989	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000546989	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000546989	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000228306	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000228306	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000228306	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000228306	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3CDS	ENST00000550296	ENST00000435680		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000550296	ENST00000425768		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000550296	ENST00000314404		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-3UTR	ENST00000550296	ENST00000563714		ChiTaRS3.1			AI765188	RPLP0	chr12	120634684	+	MTMR10	chr15	31251088	+
intron-intron	ENST00000389484	ENST00000378707		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000359836		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000541735		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000343523		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000378677		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000357033		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000474231		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000378723		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000378702		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000361471		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000378680		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000288447		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000389484	ENST00000445312		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000378707		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000359836		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000541735		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000343523		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000378677		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000357033		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000474231		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000378723		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000378702		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000361471		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000378680		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000288447		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000486364	ENST00000445312		ChiTaRS3.1			BF325818	LRP1B	chr2	142409708	+	DMD	chrX	32925954	-
intron-intron	ENST00000488324	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000488324	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000488324	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000488324	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000399199	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000399199	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000399199	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000274853	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000274853	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000274853	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000498031	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000498031	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000498031	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000444206	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000444206	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000444206	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438815	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000438815	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000438815	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000552716	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000552716	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000552716	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000491628	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000491628	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000491628	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435929	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000435929	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000435929	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000412189	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000412189	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000412189	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000548255	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000548255	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000548255	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000493833	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000493833	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000493833	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000438945	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000438945	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000438945	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000455935	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000455935	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000455935	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551049	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000551049	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000551049	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000472334	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000472334	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000472334	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000451544	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000451544	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000451544	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000437121	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000437121	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000437121	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551034	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000551034	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000551034	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000465704	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000465704	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000465704	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000383573	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000383573	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000383573	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000400554	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000400554	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000400554	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000550073	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000550073	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000550073	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000492746	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000492746	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000492746	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000449705	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000449705	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000449705	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000443517	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000443517	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000443517	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000551784	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000551784	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000551784	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000487859	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000487859	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000487859	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000488324		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000399199		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000274853		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000498031		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000444206		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000438815		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000552716		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000491628		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000435929		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000412189		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000548255		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000493833		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000438945		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000455935		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000551049		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000472334		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000451544		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000437121		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000551034		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000465704		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000383573		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000400554		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000550073		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000492746		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000449705		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000443517		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000435006	ENST00000551784		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-5UTR	ENST00000435006	ENST00000487859		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-3UTR	ENST00000435006	ENST00000435006		ChiTaRS3.1			CA430558	PPP1R18	chr6	2156351	+	PPP1R18	chr6	1976956	-
intron-intron	ENST00000351050	ENST00000351050		ChiTaRS3.1			CD620138	GNAT2	chr1	110155867	+	GNAT2	chr1	110154864	+
intron-intron	ENST00000605917	ENST00000269489		ChiTaRS3.1			BE142318	CASC15	chr6	21703485	+	SERPINB13	chr18	61255847	+
intron-intron	ENST00000605917	ENST00000344731		ChiTaRS3.1			BE142318	CASC15	chr6	21703485	+	SERPINB13	chr18	61255847	+
5UTR-3CDS	ENST00000304921	ENST00000409379		ChiTaRS3.1			U16258	RPS7	chr2	3623189	-	TONSL	chr8	145668562	-
5UTR-3CDS	ENST00000407445	ENST00000409379		ChiTaRS3.1			U16258	RPS7	chr2	3623189	-	TONSL	chr8	145668562	-
5UTR-3CDS	ENST00000403564	ENST00000409379		ChiTaRS3.1			U16258	RPS7	chr2	3623189	-	TONSL	chr8	145668562	-
intron-3CDS	ENST00000406376	ENST00000409379		ChiTaRS3.1			U16258	RPS7	chr2	3623189	-	TONSL	chr8	145668562	-
3UTR-intron	ENST00000001008	ENST00000280886		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
3UTR-intron	ENST00000001008	ENST00000381496		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
3UTR-intron	ENST00000001008	ENST00000540204		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
intron-intron	ENST00000540260	ENST00000280886		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
intron-intron	ENST00000540260	ENST00000381496		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
intron-intron	ENST00000540260	ENST00000540204		ChiTaRS3.1			T05258	FKBP4	chr12	2912914	+	DIP2C	chr10	681425	-
intron-intron	ENST00000483612	ENST00000545128		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-intron	ENST00000483612	ENST00000376767		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-3UTR	ENST00000483612	ENST00000376752		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-intron	ENST00000292401	ENST00000545128		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-intron	ENST00000292401	ENST00000376767		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-3UTR	ENST00000292401	ENST00000376752		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-intron	ENST00000411734	ENST00000545128		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-intron	ENST00000411734	ENST00000376767		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-3UTR	ENST00000411734	ENST00000376752		ChiTaRS3.1			AI810898	AZGP1	chr7	99564422	+	PCSK5	chr9	78808743	-
intron-3CDS	ENST00000346128	ENST00000346128		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000346128	ENST00000400011		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000346128	ENST00000356107		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000346128	ENST00000545208		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-intron	ENST00000346128	ENST00000495972		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000400011	ENST00000346128		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000400011	ENST00000400011		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000400011	ENST00000356107		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000400011	ENST00000545208		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-intron	ENST00000400011	ENST00000495972		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000356107	ENST00000346128		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000356107	ENST00000400011		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000356107	ENST00000356107		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000356107	ENST00000545208		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-intron	ENST00000356107	ENST00000495972		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000545208	ENST00000346128		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000545208	ENST00000400011		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000545208	ENST00000356107		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000545208	ENST00000545208		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-intron	ENST00000545208	ENST00000495972		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000495972	ENST00000346128		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000495972	ENST00000400011		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000495972	ENST00000356107		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-3CDS	ENST00000495972	ENST00000545208		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
intron-intron	ENST00000495972	ENST00000495972		ChiTaRS3.1			BF515358	TJP1	chr15	30114315	+	TJP1	chr15	30010924	-
5CDS-3UTR	ENST00000223273	ENST00000223273		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000448268		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000432096		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000469737		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000448268	ENST00000223273		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000448268		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000432096		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000469737		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000432096	ENST00000223273		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000448268		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000432096		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000469737		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000469737	ENST00000223273		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000448268		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000432096		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000469737		ChiTaRS3.1			AW819978	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000379261	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000379261	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000379261	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000379261	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000379261	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000379261	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000416382	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000450189	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000542579	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000399850	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000417956	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354440	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000427450	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000315874	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000608830	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000609692	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000354897	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000254066		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000394089		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000425707		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000394086		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000394081		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
intron-intron	ENST00000537122	ENST00000420042		ChiTaRS3.1			T12388	CELF2	chr10	11233542	-	RARA	chr17	38556914	-
5CDS-5UTR	ENST00000337273	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000337273	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000337273	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000337273	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000337273	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000337273	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000337273	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000337273	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000454282	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000454282	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000454282	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000447967	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000447967	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000447967	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000523768	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000523768	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000523768	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-intron	ENST00000513944	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-5UTR	ENST00000513944	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
3UTR-intron	ENST00000513944	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000520810		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000416505		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000519735		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000506351	ENST00000520835		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000379708		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000518983		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-5UTR	ENST00000506351	ENST00000522147		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
5CDS-intron	ENST00000506351	ENST00000522785		ChiTaRS3.1			HM245392	TNPO1	chr5	72147146	+	IKBKB	chr8	42129599	+
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			CA429068	COL1A1	chr17	48262018	+	COL1A1	chr17	48262810	-
intron-intron	ENST00000450943	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000354888	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393108	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393110	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393106	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393107	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000409811	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000425223	ENST00000463480		ChiTaRS3.1			AV649558	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-3UTR	ENST00000372978	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000372978	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000372978	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000372978	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000494547	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000494547	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000494547	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000494547	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000456846	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000456846	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000456846	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000456846	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000372982	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000372982	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000372982	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000372982	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000472818	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000472818	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000472818	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000472818	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
3UTR-3UTR	ENST00000372977	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
3UTR-3UTR	ENST00000372977	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
3UTR-3UTR	ENST00000372977	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
3UTR-intron	ENST00000372977	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482926	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482926	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482926	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000482926	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000465926	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000465926	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000465926	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000465926	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482432	ENST00000398970		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482432	ENST00000300574		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-3UTR	ENST00000482432	ENST00000574295		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
intron-intron	ENST00000482432	ENST00000572145		ChiTaRS3.1			AI969618	TAF8	chr6	42047541	-	CRK	chr17	1326092	+
3UTR-3CDS	ENST00000400337	ENST00000400337		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000400337	ENST00000355480		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000400337	ENST00000359759		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-intron	ENST00000400337	ENST00000459895		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000355480	ENST00000400337		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000355480	ENST00000355480		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000355480	ENST00000359759		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-intron	ENST00000355480	ENST00000459895		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000359759	ENST00000400337		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000359759	ENST00000355480		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-3CDS	ENST00000359759	ENST00000359759		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
3UTR-intron	ENST00000359759	ENST00000459895		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
intron-3CDS	ENST00000459895	ENST00000400337		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
intron-3CDS	ENST00000459895	ENST00000355480		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
intron-3CDS	ENST00000459895	ENST00000359759		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
intron-intron	ENST00000459895	ENST00000459895		ChiTaRS3.1			W07798	COL18A1	chr21	46933352	+	COL18A1	chr21	46925294	+
intron-intron	ENST00000428417	ENST00000428417		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000376014		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000400796		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000434578		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000428417	ENST00000376008		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000428417		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000376014		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000400796		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000434578		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376014	ENST00000376008		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000428417		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000376014		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000400796		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000434578		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000400796	ENST00000376008		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000428417		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000376014		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000400796		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000434578		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000434578	ENST00000376008		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000428417		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000376014		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000400796		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000434578		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-intron	ENST00000376008	ENST00000376008		ChiTaRS3.1			CV427168	TMEM51	chr1	15515537	+	TMEM51	chr1	15515514	-
intron-3UTR	ENST00000487990	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000487990	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000487990	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000487990	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000399272	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000399272	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000399272	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000489903	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000489903	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000489903	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000313806	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000313806	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000313806	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000443408	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000443408	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000443408	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000482533	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000482533	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000482533	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000481448	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000481448	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000481448	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000381132	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381132	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000381132	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000381135	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000381135	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000381135	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000487990		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000399272		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000492600	ENST00000489903		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000313806		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000443408		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000482533		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000481448		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000381132		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-3UTR	ENST00000492600	ENST00000381135		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-intron	ENST00000492600	ENST00000492600		ChiTaRS3.1			L25478	RCAN1	chr21	35890137	+	RCAN1	chr21	35890222	-
intron-5UTR	ENST00000392038	ENST00000392038		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000392038	ENST00000424901		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000392038	ENST00000311278		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000392038	ENST00000579047		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000392038	ENST00000581582		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000424901	ENST00000392038		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000424901	ENST00000424901		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000424901	ENST00000311278		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000424901	ENST00000579047		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000424901	ENST00000581582		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000311278	ENST00000392038		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000311278	ENST00000424901		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000311278	ENST00000311278		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000311278	ENST00000579047		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000311278	ENST00000581582		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000579047	ENST00000392038		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000579047	ENST00000424901		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000579047	ENST00000311278		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000579047	ENST00000579047		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000579047	ENST00000581582		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000581582	ENST00000392038		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000581582	ENST00000424901		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000581582	ENST00000311278		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-5UTR	ENST00000581582	ENST00000579047		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
intron-intron	ENST00000581582	ENST00000581582		ChiTaRS3.1			BF739868	AKT2	chr19	40740983	-	AKT2	chr19	40791210	-
3UTR-intron	ENST00000566228	ENST00000410534		ChiTaRS3.1			CD673868	SNX29	chr16	12667731	-	SOX2-OT	chr3	181421817	-
intron-intron	ENST00000323433	ENST00000410534		ChiTaRS3.1			CD673868	SNX29	chr16	12667731	-	SOX2-OT	chr3	181421817	-
3UTR-intron	ENST00000306030	ENST00000410534		ChiTaRS3.1			CD673868	SNX29	chr16	12667731	-	SOX2-OT	chr3	181421817	-
intron-intron	ENST00000568359	ENST00000410534		ChiTaRS3.1			CD673868	SNX29	chr16	12667731	-	SOX2-OT	chr3	181421817	-
intron-3CDS	ENST00000377795	ENST00000258484		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-intron	ENST00000377795	ENST00000409654		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-3CDS	ENST00000353334	ENST00000258484		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-intron	ENST00000353334	ENST00000409654		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-3CDS	ENST00000524315	ENST00000258484		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-intron	ENST00000524315	ENST00000409654		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-3CDS	ENST00000009530	ENST00000258484		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-intron	ENST00000009530	ENST00000409654		ChiTaRS3.1			BE817748	CD74	chr5	149781578	+	EPC2	chr2	149539312	+
intron-intron	ENST00000366574	ENST00000366574		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000366574	ENST00000360064		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000366574	ENST00000542537		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000366574	ENST00000609119		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000360064	ENST00000366574		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000360064	ENST00000360064		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000360064	ENST00000542537		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000360064	ENST00000609119		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000542537	ENST00000366574		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000542537	ENST00000360064		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000542537	ENST00000542537		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000542537	ENST00000609119		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000609119	ENST00000366574		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000609119	ENST00000360064		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000609119	ENST00000542537		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-intron	ENST00000609119	ENST00000609119		ChiTaRS3.1			AW904648	RYR2	chr1	237285693	+	RYR2	chr1	237276778	+
intron-3CDS	ENST00000392452	ENST00000324096		ChiTaRS3.1			DB148428	MB21D2	chr3	192635594	-	MAP1S	chr19	17836673	+
intron-intron	ENST00000392452	ENST00000597681		ChiTaRS3.1			DB148428	MB21D2	chr3	192635594	-	MAP1S	chr19	17836673	+
intron-intron	ENST00000392452	ENST00000544059		ChiTaRS3.1			DB148428	MB21D2	chr3	192635594	-	MAP1S	chr19	17836673	+
intron-intron	ENST00000607452	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000607452	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000303536	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000394666	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606865	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000458030	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000422521	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000606082	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000607452		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000303536		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000394666		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000606865		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000458030		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000422521		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000606082		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
intron-intron	ENST00000406041	ENST00000406041		ChiTaRS3.1			DW435378	ACYP2	chr2	54386478	+	ACYP2	chr2	54385792	+
3UTR-3CDS	ENST00000335742	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000335742	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000335742	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000335742	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000335742	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-3CDS	ENST00000261509	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000261509	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000261509	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000261509	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000261509	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-3CDS	ENST00000505667	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000505667	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000505667	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000505667	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000505667	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-3CDS	ENST00000333488	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000333488	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000333488	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000333488	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000333488	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-3CDS	ENST00000512127	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000512127	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000512127	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000512127	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000512127	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-3CDS	ENST00000507735	ENST00000394332		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000507735	ENST00000394333		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000507735	ENST00000479035		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000507735	ENST00000245857		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
3UTR-intron	ENST00000507735	ENST00000577407		ChiTaRS3.1			AA045738	PALLD	chr4	169849369	-	RPL23	chr17	37006699	-
intron-intron	ENST00000272203	ENST00000524325		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000272203	ENST00000307180		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000272203	ENST00000520166		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000272203	ENST00000519651		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000272203	ENST00000518928		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000414478	ENST00000524325		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000414478	ENST00000307180		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000414478	ENST00000520166		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000414478	ENST00000519651		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000414478	ENST00000518928		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000485632	ENST00000524325		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000485632	ENST00000307180		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000485632	ENST00000520166		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000485632	ENST00000519651		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-intron	ENST00000485632	ENST00000518928		ChiTaRS3.1			BG951558	PLEKHA6	chr1	204218803	+	TSNARE1	chr8	143400262	+
intron-3CDS	ENST00000543824	ENST00000369002		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-intron	ENST00000543824	ENST00000460009		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-3CDS	ENST00000433847	ENST00000369002		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-intron	ENST00000433847	ENST00000460009		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
3UTR-3CDS	ENST00000433083	ENST00000369002		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
3UTR-intron	ENST00000433083	ENST00000460009		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-3CDS	ENST00000544916	ENST00000369002		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-intron	ENST00000544916	ENST00000460009		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-3CDS	ENST00000536844	ENST00000369002		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-intron	ENST00000536844	ENST00000460009		ChiTaRS3.1			BC017748	PHC1	chr12	9093008	+	SEC63	chr6	108214835	-
intron-intron	ENST00000368679	ENST00000474629		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000368679	ENST00000475640		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000368676	ENST00000474629		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000368676	ENST00000475640		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000467145	ENST00000474629		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000467145	ENST00000475640		ChiTaRS3.1			BF369128	ADAM12	chr10	127914907	+	PARP14	chr3	122407959	-
intron-intron	ENST00000453258	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000453258	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000453258	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000453258	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000453258	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000453258	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000453258	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000543964	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000543964	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000371207	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371207	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000371203	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371203	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000539125	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000539125	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000371205	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000371205	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000540693		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000337343		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000379274		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000490659	ENST00000261491		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000536612		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000498255		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-intron	ENST00000490659	ENST00000538674		ChiTaRS3.1			W80598	ENTPD1	chr10	97602931	+	DGKH	chr13	42811785	+
intron-3UTR	ENST00000404767	ENST00000376929		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000404767	ENST00000506690		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000389805		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000402874		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000510187		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000360718		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000376929		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000389470	ENST00000506690		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000389805		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000402874		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000510187		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000360718		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000376929		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000493531	ENST00000506690		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000389805		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000402874		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000510187		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000360718		ChiTaRS3.1			AX748318	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			AW238718	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-intron	ENST00000381501	ENST00000406625		ChiTaRS3.1			BF795018	TEC	chr4	48138821	-	ASB3	chr2	54005455	+
intron-intron	ENST00000381501	ENST00000498475		ChiTaRS3.1			BF795018	TEC	chr4	48138821	-	ASB3	chr2	54005455	+
intron-intron	ENST00000511471	ENST00000406625		ChiTaRS3.1			BF795018	TEC	chr4	48138821	-	ASB3	chr2	54005455	+
intron-intron	ENST00000511471	ENST00000498475		ChiTaRS3.1			BF795018	TEC	chr4	48138821	-	ASB3	chr2	54005455	+
intron-intron	ENST00000366935	ENST00000366935		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366935	ENST00000489246		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366935	ENST00000366934		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000366935		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000489246		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000489246	ENST00000366934		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000366935		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000489246		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000366934	ENST00000366934		ChiTaRS3.1			AW973088	GPATCH2	chr1	217765525	-	GPATCH2	chr1	217765582	+
intron-intron	ENST00000267085	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000379843	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000379846	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000444623	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000453446	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000542115	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
intron-intron	ENST00000491654	ENST00000516892		ChiTaRS3.1			CK005588	CSAD	chr12	53551575	+	MEG3	chr14	101315053	+
5UTR-3CDS	ENST00000371497	ENST00000371497		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
5UTR-3CDS	ENST00000371497	ENST00000603338		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
5UTR-3CDS	ENST00000371497	ENST00000329613		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000603338	ENST00000371497		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000603338	ENST00000603338		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000603338	ENST00000329613		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000329613	ENST00000371497		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000329613	ENST00000603338		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-3CDS	ENST00000329613	ENST00000329613		ChiTaRS3.1			BQ009308	TSHZ2	chr20	51589305	-	TSHZ2	chr20	51870065	-
intron-intron	ENST00000604938	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000604938	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000604938	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401010	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401010	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401010	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000339388	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000339388	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000339388	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000369323	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000369323	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000369323	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000605317	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000605317	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000605317	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000479926	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000479926	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000479926	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000604894	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000604894	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000604894	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401009	ENST00000225823		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401009	ENST00000359872		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000401009	ENST00000448983		ChiTaRS3.1			AF420438	NBPF11	chr1	147586723	-	ASIC2	chr17	32007600	+
intron-intron	ENST00000288774	ENST00000288774		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000288774	ENST00000447513		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000288774	ENST00000507596		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000288774	ENST00000515760		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000447513	ENST00000288774		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000447513	ENST00000447513		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000447513	ENST00000507596		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000447513	ENST00000515760		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000507596	ENST00000288774		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000507596	ENST00000447513		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000507596	ENST00000507596		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000507596	ENST00000515760		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000515760	ENST00000288774		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000515760	ENST00000447513		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000515760	ENST00000507596		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
intron-intron	ENST00000515760	ENST00000515760		ChiTaRS3.1			BF913228	PEX10	chr1	2338390	-	PEX10	chr1	2338158	+
3UTR-3UTR	ENST00000537871	ENST00000439374		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
3UTR-3UTR	ENST00000537871	ENST00000540998		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
3UTR-3UTR	ENST00000537871	ENST00000357235		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
3UTR-5UTR	ENST00000537871	ENST00000492796		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000439013	ENST00000439374		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000439013	ENST00000540998		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000439013	ENST00000357235		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-5UTR	ENST00000439013	ENST00000492796		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000255688	ENST00000439374		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000255688	ENST00000540998		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000255688	ENST00000357235		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-5UTR	ENST00000255688	ENST00000492796		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000354445	ENST00000439374		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000354445	ENST00000540998		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-3UTR	ENST00000354445	ENST00000357235		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
5CDS-5UTR	ENST00000354445	ENST00000492796		ChiTaRS3.1			BE711178	RARRES3	chr11	63312329	-	CDC42SE1	chr1	151025565	+
intron-intron	ENST00000357847	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000357847	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000344492	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000275235	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367598	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000494282	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000466387		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000496558		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000361291		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000402739		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000540488		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000541047		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000343114		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000496251		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-intron	ENST00000367596	ENST00000409266		ChiTaRS3.1			AW576718	AIG1	chr6	143660033	-	CTNNA2	chr2	80335950	+
intron-3UTR	ENST00000536122	ENST00000315238		ChiTaRS3.1			BX507088	GAS8	chr16	90110929	-	CALML3	chr10	5567635	-
3UTR-3UTR	ENST00000268699	ENST00000315238		ChiTaRS3.1			BX507088	GAS8	chr16	90110929	-	CALML3	chr10	5567635	-
intron-3UTR	ENST00000540721	ENST00000315238		ChiTaRS3.1			BX507088	GAS8	chr16	90110929	-	CALML3	chr10	5567635	-
intron-3CDS	ENST00000231512	ENST00000333891		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-3CDS	ENST00000231512	ENST00000423517		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-intron	ENST00000231512	ENST00000437081		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-intron	ENST00000231512	ENST00000426442		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-3CDS	ENST00000507191	ENST00000333891		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-3CDS	ENST00000507191	ENST00000423517		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-intron	ENST00000507191	ENST00000437081		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-intron	ENST00000507191	ENST00000426442		ChiTaRS3.1			CV426848	C5orf15	chr5	133301054	+	PCLO	chr7	82764165	-
intron-intron	ENST00000280551	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000280551	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000379735	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000429811	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000505134	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000511481	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368533		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000469717		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000330188		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341485		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000341372		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000328159		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000271850		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000302206		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368531		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000323144		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
intron-intron	ENST00000419654	ENST00000368530		ChiTaRS3.1			BE695898	SEC24D	chr4	119644235	+	TPM3	chr1	154158571	+
3UTR-intron	ENST00000336375	ENST00000397195		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
3UTR-intron	ENST00000336375	ENST00000572915		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
3UTR-intron	ENST00000336375	ENST00000451360		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000397195		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000572915		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000451360		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000397195		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000572915		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000451360		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000397195		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000572915		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000451360		ChiTaRS3.1			BE768768	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-3UTR	ENST00000309958	ENST00000309958		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000309958	ENST00000391805		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000309958	ENST00000358789		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000391805	ENST00000309958		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000391805	ENST00000391805		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000391805	ENST00000358789		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000358789	ENST00000309958		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000358789	ENST00000391805		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-3UTR	ENST00000358789	ENST00000358789		ChiTaRS3.1			BM981978	KLK10	chr19	51517831	+	KLK10	chr19	51517917	-
intron-intron	ENST00000156626	ENST00000396353		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000156626	ENST00000396355		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000156626	ENST00000396354		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000156626	ENST00000342673		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000156626	ENST00000571896		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000590878	ENST00000396353		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000590878	ENST00000396355		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000590878	ENST00000396354		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000590878	ENST00000342673		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000590878	ENST00000571896		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000589992	ENST00000396353		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000589992	ENST00000396355		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000589992	ENST00000396354		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000589992	ENST00000342673		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-intron	ENST00000589992	ENST00000571896		ChiTaRS3.1			BQ326548	ST6GALNAC1	chr17	74625372	+	NDE1	chr16	15797759	+
intron-3UTR	ENST00000300134	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000300134	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000300134	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000300134	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000300134	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000538913	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000538913	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000538913	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000538913	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000538913	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000543873	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000543873	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000543873	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000543873	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000543873	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000556155	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000556155	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000556155	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000556155	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000556155	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000537215	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000537215	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000537215	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000537215	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000537215	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000454075	ENST00000346329		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-3UTR	ENST00000454075	ENST00000301843		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000454075	ENST00000527622		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000454075	ENST00000376561		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000454075	ENST00000538675		ChiTaRS3.1			BF808288	STAT6	chr12	57493651	+	CTTN	chr11	70282283	+
intron-intron	ENST00000351293	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000351293	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000351293	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000351293	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322635	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322635	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322635	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322635	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000394762	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000394762	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000394762	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000394762	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000423381	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000423381	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000423381	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000423381	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322680	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322680	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000322680	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000322680	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000305762	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000305762	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000305762	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000305762	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000372765	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000372765	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000372765	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000372765	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000472912	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000472912	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000472912	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000472912	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000444854	ENST00000351293		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000322635		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000394762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000423381		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000322680		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000444854	ENST00000305762		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-intron	ENST00000444854	ENST00000372765		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000472912		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
intron-5UTR	ENST00000444854	ENST00000444854		ChiTaRS3.1			AU119968	CAMK2G	chr10	75573706	-	CAMK2G	chr10	75634304	-
5CDS-intron	ENST00000375759	ENST00000599680		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000309877		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000600911		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000596822		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000601291		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000377139		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000597198		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000593922		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000600022		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000599223		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000596765		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000599144		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000598808		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000377135		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
5CDS-intron	ENST00000375759	ENST00000442265		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000599680		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000309877		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000600911		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000596822		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000601291		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000377139		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000597198		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000593922		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000600022		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000599223		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000596765		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000599144		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000598808		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000377135		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
intron-intron	ENST00000471538	ENST00000442265		ChiTaRS3.1			BQ320088	SPEN	chr1	16261744	-	IRF3	chr19	50165210	+
3UTR-3UTR	ENST00000356607	ENST00000356607		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
3UTR-intron	ENST00000356607	ENST00000538836		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
3UTR-intron	ENST00000356607	ENST00000492696		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-3UTR	ENST00000538836	ENST00000356607		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-intron	ENST00000538836	ENST00000538836		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-intron	ENST00000538836	ENST00000492696		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-3UTR	ENST00000492696	ENST00000356607		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-intron	ENST00000492696	ENST00000538836		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
intron-intron	ENST00000492696	ENST00000492696		ChiTaRS3.1			BE892938	PEX14	chr1	10690686	-	PEX14	chr1	10690719	+
Frame-shit	ENST00000221166	ENST00000221166		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000221166	ENST00000518131		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000221166	ENST00000521540		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000221166	ENST00000437366		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000221166	ENST00000433454		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-3CDS	ENST00000518131	ENST00000221166		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000518131	ENST00000518131		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000518131	ENST00000521540		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000518131	ENST00000437366		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000518131	ENST00000433454		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-3CDS	ENST00000521540	ENST00000221166		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000521540	ENST00000518131		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000521540	ENST00000521540		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000521540	ENST00000437366		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-intron	ENST00000521540	ENST00000433454		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
Frame-shit	ENST00000437366	ENST00000221166		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000437366	ENST00000518131		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000437366	ENST00000521540		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000437366	ENST00000437366		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000437366	ENST00000433454		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
In-frame	ENST00000433454	ENST00000221166		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000433454	ENST00000518131		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000433454	ENST00000521540		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000433454	ENST00000437366		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
5CDS-intron	ENST00000433454	ENST00000433454		ChiTaRS3.1			W27448	NEFM	chr8	24775455	-	NEFM	chr8	24775206	+
intron-3UTR	ENST00000330720	ENST00000330720		ChiTaRS3.1			AI826978	KDELR1	chr19	48886425	+	KDELR1	chr19	48886117	+
intron-3UTR	ENST00000330720	ENST00000597017		ChiTaRS3.1			AI826978	KDELR1	chr19	48886425	+	KDELR1	chr19	48886117	+
intron-3UTR	ENST00000597017	ENST00000330720		ChiTaRS3.1			AI826978	KDELR1	chr19	48886425	+	KDELR1	chr19	48886117	+
intron-3UTR	ENST00000597017	ENST00000597017		ChiTaRS3.1			AI826978	KDELR1	chr19	48886425	+	KDELR1	chr19	48886117	+
intron-intron	ENST00000404771	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404771	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372440	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000372443	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286628	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000286627	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000354353	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000404857	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000406533	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000484507	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000481070	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000404771		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000372440		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000372443		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000286628		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000286627		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000354353		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000404857		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000406533		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000484507		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000481070		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000480683	ENST00000480683		ChiTaRS3.1			BE145278	KCNMA1	chr10	79197103	+	KCNMA1	chr10	79209195	-
intron-intron	ENST00000310961	ENST00000252674		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000310961	ENST00000585588		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000370958	ENST00000252674		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000370958	ENST00000585588		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000035383	ENST00000252674		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000035383	ENST00000585588		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000415775	ENST00000252674		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000415775	ENST00000585588		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000565615	ENST00000252674		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000565615	ENST00000585588		ChiTaRS3.1			BQ367648	LRRC7	chr1	70251670	+	MLLT1	chr19	6210643	+
intron-intron	ENST00000253413	ENST00000465812		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000409052		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000361779		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000259206		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000354115		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000409930		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000399796	ENST00000465812		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000409052		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000361779		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000259206		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000354115		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000409930		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000399798	ENST00000465812		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000409052		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000361779		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000259206		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000354115		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000409930		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000478963	ENST00000465812		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000409052		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000361779		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000259206		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000354115		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000409930		ChiTaRS3.1			AW794588	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
3UTR-3CDS	ENST00000535772	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000535772	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000535772	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000535772	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000535772	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000535772	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000535772	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000344290	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000344290	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000351559	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000351559	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000347967	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000347967	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000262410	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000262410	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000340799	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000340799	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000570299	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000570299	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000334239	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000334239	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3CDS	ENST00000446361	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
3UTR-3UTR	ENST00000446361	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000574436	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000574436	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000431008	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000431008	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000571987	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000571987	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000420682	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000420682	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000415613	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000415613	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000535772		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000344290		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000351559		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000347967		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000262410		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000576518	ENST00000340799		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000570299		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000334239		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000446361		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000574436		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000431008		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000571987		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000420682		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000415613		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3UTR	ENST00000576518	ENST00000576518		ChiTaRS3.1			AA443868	MAPT	chr17	44104344	+	MAPT	chr17	44073963	+
intron-3CDS	ENST00000448418	ENST00000324096		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000448418	ENST00000597681		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000448418	ENST00000544059		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-3CDS	ENST00000358117	ENST00000324096		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000358117	ENST00000597681		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000358117	ENST00000544059		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-3CDS	ENST00000524667	ENST00000324096		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000524667	ENST00000597681		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000524667	ENST00000544059		ChiTaRS3.1			AL037898	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
3UTR-3CDS	ENST00000470258	ENST00000275034		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000470258	ENST00000479165		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-3CDS	ENST00000379600	ENST00000275034		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000379600	ENST00000479165		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-3CDS	ENST00000379599	ENST00000275034		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000379599	ENST00000479165		ChiTaRS3.1			BF946218	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
intron-intron	ENST00000513376	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000513376	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000205214	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000434343	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000451613	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000602986	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000502617	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000599680		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000309877		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000600911		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000596822		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000601291		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000377139		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000597198		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000593922		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000600022		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000599223		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000596765		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000599144		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000598808		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000377135		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000510762	ENST00000442265		ChiTaRS3.1			BG315188	AASDH	chr4	57204721	+	IRF3	chr19	50165205	+
intron-intron	ENST00000354105	ENST00000434618		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000475304		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000489157		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000426633		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000456592		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000467834		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000374568		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000374572		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000395114		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000550330		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000552779		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000480059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000437315		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000417059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000456807		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000549949		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000553235		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000495024		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000383067		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000383066		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000551943		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000383065		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000546700		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000550794		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-5UTR	ENST00000354105	ENST00000461837		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000354105	ENST00000412144		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000354105	ENST00000383198		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000354105	ENST00000548408		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000383197		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000550915		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000354105	ENST00000549142		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000434618		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000475304		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000489157		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000426633		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000456592		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000467834		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000374568		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000374572		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000395114		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000550330		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000552779		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000480059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000437315		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000417059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000456807		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000549949		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000553235		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000495024		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000383067		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000383066		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000551943		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000383065		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000546700		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000550794		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-5UTR	ENST00000478047	ENST00000461837		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000478047	ENST00000412144		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000478047	ENST00000383198		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000478047	ENST00000548408		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000383197		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000550915		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000478047	ENST00000549142		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000434618		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000475304		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000489157		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000426633		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000456592		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000467834		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000374568		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000374572		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000395114		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000550330		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000552779		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000480059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000437315		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000417059		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000456807		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000549949		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000553235		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000495024		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000383067		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000383066		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000551943		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000383065		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000546700		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000550794		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-5UTR	ENST00000370379	ENST00000461837		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000370379	ENST00000412144		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000370379	ENST00000383198		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-3UTR	ENST00000370379	ENST00000548408		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000383197		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000550915		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000370379	ENST00000549142		ChiTaRS3.1			CA425588	CWF19L1	chr10	101992222	+	TAPBP	chr6	4501042	+
intron-intron	ENST00000337225	ENST00000267085		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000379843		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000379846		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000444623		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000453446		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000542115		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000337225	ENST00000491654		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000267085		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000379843		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000379846		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000444623		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000453446		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000542115		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
intron-intron	ENST00000512158	ENST00000491654		ChiTaRS3.1			BX093038	CXCL14	chr5	134907529	+	CSAD	chr12	53569583	+
3UTR-3CDS	ENST00000537561	ENST00000375687		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000537561	ENST00000542461		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000537561	ENST00000375689		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000537561	ENST00000306058		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000537561	ENST00000470145		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-3CDS	ENST00000359850	ENST00000375687		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000359850	ENST00000542461		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000359850	ENST00000375689		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000359850	ENST00000306058		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000359850	ENST00000470145		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-3CDS	ENST00000521288	ENST00000375687		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000521288	ENST00000542461		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000521288	ENST00000375689		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000521288	ENST00000306058		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
3UTR-intron	ENST00000521288	ENST00000470145		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-3CDS	ENST00000502852	ENST00000375687		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-intron	ENST00000502852	ENST00000542461		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-intron	ENST00000502852	ENST00000375689		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-intron	ENST00000502852	ENST00000306058		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-intron	ENST00000502852	ENST00000470145		ChiTaRS3.1			BQ323368	NUDT16	chr3	131103268	+	ASXL1	chr20	31019159	-
intron-3UTR	ENST00000383777	ENST00000460265		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000383777	ENST00000261366		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-intron	ENST00000383777	ENST00000395354		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000399451	ENST00000460265		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000399451	ENST00000261366		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-intron	ENST00000399451	ENST00000395354		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000497037	ENST00000460265		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000497037	ENST00000261366		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-intron	ENST00000497037	ENST00000395354		ChiTaRS3.1			AI133188	ANKRD28	chr3	15736279	+	LMNB1	chr5	126172612	+
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CN287078	IGFBP5	chr2	217541013	-	IGFBP5	chr2	217540985	+
intron-3UTR	ENST00000366911	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366911	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366911	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366911	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366911	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366911	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000320285	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000320285	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000320285	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000320285	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000320285	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000320285	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000457520	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000457520	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000457520	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000457520	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000457520	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000457520	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366908	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366908	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366908	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366908	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366908	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366908	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366906	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366906	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366906	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366906	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366906	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366906	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366905	ENST00000366911		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-3UTR	ENST00000366905	ENST00000320285		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366905	ENST00000457520		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366905	ENST00000366908		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366905	ENST00000366906		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
intron-intron	ENST00000366905	ENST00000366905		ChiTaRS3.1			BU073418	AGPAT4	chr6	161551572	-	AGPAT4	chr6	161551334	+
Frame-shit	ENST00000272638	ENST00000272638		ChiTaRS3.1			CB242758	UBXN4	chr2	136513233	-	UBXN4	chr2	136513132	+
5CDS-3UTR	ENST00000272638	ENST00000490163		ChiTaRS3.1			CB242758	UBXN4	chr2	136513233	-	UBXN4	chr2	136513132	+
3UTR-3CDS	ENST00000490163	ENST00000272638		ChiTaRS3.1			CB242758	UBXN4	chr2	136513233	-	UBXN4	chr2	136513132	+
3UTR-3UTR	ENST00000490163	ENST00000490163		ChiTaRS3.1			CB242758	UBXN4	chr2	136513233	-	UBXN4	chr2	136513132	+
intron-intron	ENST00000317552	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000317552	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000317552	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000317552	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000317552	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000317552	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000453318	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380779	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380780	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380785	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380787	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000380782	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000251607		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000339437		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000280591		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000420393		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000402675		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-intron	ENST00000479925	ENST00000469632		ChiTaRS3.1			BM889498	MID1	chrX	11084628	-	TRNT1	chr3	3191729	+
intron-3UTR	ENST00000333188	ENST00000256686		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000333188	ENST00000549288		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000333188	ENST00000552561		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000333188	ENST00000552546		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000333188	ENST00000550552		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000333188	ENST00000429772		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000333188	ENST00000449758		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000507777	ENST00000256686		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000507777	ENST00000549288		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000507777	ENST00000552561		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000507777	ENST00000552546		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000507777	ENST00000550552		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000507777	ENST00000429772		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000507777	ENST00000449758		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000510491	ENST00000256686		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000510491	ENST00000549288		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000510491	ENST00000552561		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000510491	ENST00000552546		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-intron	ENST00000510491	ENST00000550552		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000510491	ENST00000429772		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3UTR	ENST00000510491	ENST00000449758		ChiTaRS3.1			AI541208	COPB2	chr3	139108437	-	TMEM106C	chr12	48362070	+
intron-3CDS	ENST00000276420	ENST00000276420		ChiTaRS3.1			BX102028	DOK2	chr8	21766652	-	DOK2	chr8	21766930	-
intron-3CDS	ENST00000276420	ENST00000544659		ChiTaRS3.1			BX102028	DOK2	chr8	21766652	-	DOK2	chr8	21766930	-
intron-3CDS	ENST00000544659	ENST00000276420		ChiTaRS3.1			BX102028	DOK2	chr8	21766652	-	DOK2	chr8	21766930	-
intron-3CDS	ENST00000544659	ENST00000544659		ChiTaRS3.1			BX102028	DOK2	chr8	21766652	-	DOK2	chr8	21766930	-
intron-intron	ENST00000382668	ENST00000265148		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000382668	ENST00000380026		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000382668	ENST00000509120		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000382666	ENST00000265148		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000382666	ENST00000380026		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000382666	ENST00000509120		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
5CDS-intron	ENST00000427358	ENST00000265148		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
5CDS-intron	ENST00000427358	ENST00000380026		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
5CDS-intron	ENST00000427358	ENST00000509120		ChiTaRS3.1			DB357538	FAHD1	chr16	1877891	-	CENPE	chr4	104029588	+
intron-intron	ENST00000249442	ENST00000529163		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000249442	ENST00000394920		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000249442	ENST00000527914		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000249442	ENST00000262584		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000249442	ENST00000528957		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000392529	ENST00000529163		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000392529	ENST00000394920		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000392529	ENST00000527914		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000392529	ENST00000262584		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000392529	ENST00000528957		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000443241	ENST00000529163		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000443241	ENST00000394920		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000443241	ENST00000527914		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000443241	ENST00000262584		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-intron	ENST00000443241	ENST00000528957		ChiTaRS3.1			BC015588	MTX2	chr2	177178139	+	RPL8	chr8	146015154	+
intron-3CDS	ENST00000254066	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000254066	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000254066	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000254066	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000254066	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000254066	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000394089	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000394089	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000394089	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000394089	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000394089	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000394089	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000425707	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000425707	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-3CDS	ENST00000425707	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000425707	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000425707	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
5UTR-intron	ENST00000425707	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394086	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394086	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394086	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394086	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394086	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394086	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394081	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394081	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000394081	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394081	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394081	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000394081	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000420042	ENST00000254066		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000420042	ENST00000394089		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3CDS	ENST00000420042	ENST00000425707		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000420042	ENST00000394086		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000420042	ENST00000394081		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-intron	ENST00000420042	ENST00000420042		ChiTaRS3.1			X06538	RARA	chr17	38474639	-	RARA	chr17	38487504	+
intron-3UTR	ENST00000341056	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000341056	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000341056	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000341056	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000341056	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000341056	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396045	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396045	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396045	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396045	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396045	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000396045	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000310758	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000310758	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000310758	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000310758	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000310758	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000310758	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396040	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396040	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396040	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396040	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000396040	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000396040	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000442504	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000442504	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000442504	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000442504	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000442504	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000442504	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000448602	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000448602	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000448602	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000448602	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000448602	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000448602	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000479447	ENST00000397293		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000479447	ENST00000424878		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000479447	ENST00000349314		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000479447	ENST00000361710		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-3UTR	ENST00000479447	ENST00000397287		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000479447	ENST00000487423		ChiTaRS3.1			BF995818	ELMO1	chr7	37043506	-	APOL3	chr22	36536956	-
intron-intron	ENST00000277746	ENST00000457812		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000319170		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000374493		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000374489		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000374488		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000308091		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000419464		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000423104		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000439222		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000453034		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000277746	ENST00000418114		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000457812		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000319170		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000374493		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000374489		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000374488		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000308091		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000419464		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000423104		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000439222		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000453034		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
intron-intron	ENST00000435510	ENST00000418114		ChiTaRS3.1			BF986118	NRBF2	chr10	64896545	-	RAPH1	chr2	204355155	+
Frame-shit	ENST00000295897	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000295897	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000415165	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000503124	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000509063	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000401494	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000295897		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000415165		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000503124		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000509063		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000401494		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3UTR	ENST00000505649	ENST00000505649		ChiTaRS3.1			AI110818	ALB	chr4	74284021	+	ALB	chr4	74279160	+
intron-3UTR	ENST00000608933	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000608933	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000608933	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-3UTR	ENST00000295908	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000295908	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000295908	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-3UTR	ENST00000508256	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000508256	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000508256	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-3UTR	ENST00000506423	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000506423	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000506423	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-3UTR	ENST00000315194	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000315194	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000315194	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-3UTR	ENST00000514204	ENST00000260665		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000514204	ENST00000409946		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000514204	ENST00000409659		ChiTaRS3.1			BF090448	PPM1K	chr4	89182212	-	LRPPRC	chr2	44115688	-
intron-intron	ENST00000409728	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409728	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409043	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409195	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409756	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000420519	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000295237	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
5CDS-intron	ENST00000409273	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409728		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409043		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409195		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409756		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000420519		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000295237		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409273		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-intron	ENST00000409605	ENST00000409605		ChiTaRS3.1			AA179868	XIRP2	chr2	168101073	+	XIRP2	chr2	168101396	-
intron-3CDS	ENST00000539317	ENST00000540468		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000539919		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000258091		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000398422		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000537131		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000539317	ENST00000538797		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000539317	ENST00000473786		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000540468		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000539919		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000258091		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000398422		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000537131		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-3CDS	ENST00000487871	ENST00000538797		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
intron-intron	ENST00000487871	ENST00000473786		ChiTaRS3.1			BM915408	SMAP2	chr1	40882451	-	CCT7	chr2	73479862	+
3UTR-3UTR	ENST00000304625	ENST00000372330		ChiTaRS3.1			BQ336318	RNASE2	chr14	21424435	+	MMP9	chr20	44645169	-
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN920098	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
Frame-shit	ENST00000570137	ENST00000570137		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000570137	ENST00000562812		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000570137	ENST00000566173		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000570137	ENST00000563890		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
5CDS-5UTR	ENST00000570137	ENST00000562753		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000562812	ENST00000570137		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000562812	ENST00000562812		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000562812	ENST00000566173		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000562812	ENST00000563890		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
5CDS-5UTR	ENST00000562812	ENST00000562753		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000566173	ENST00000570137		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000566173	ENST00000562812		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000566173	ENST00000566173		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000566173	ENST00000563890		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
5CDS-5UTR	ENST00000566173	ENST00000562753		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000563890	ENST00000570137		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000563890	ENST00000562812		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000563890	ENST00000566173		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
Frame-shit	ENST00000563890	ENST00000563890		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
5CDS-5UTR	ENST00000563890	ENST00000562753		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-3CDS	ENST00000562753	ENST00000570137		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-3CDS	ENST00000562753	ENST00000562812		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-3CDS	ENST00000562753	ENST00000566173		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-3CDS	ENST00000562753	ENST00000563890		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-5UTR	ENST00000562753	ENST00000562753		ChiTaRS3.1			DW416378	CDYL2	chr16	80718432	-	CDYL2	chr16	80719027	-
intron-intron	ENST00000355852	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000355852	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000322099	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000461554	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000484633	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395013	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000395014	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000428823	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000355852		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000322099		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000461554		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000484633		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000395013		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000395014		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000428823		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000471622	ENST00000471622		ChiTaRS3.1			AA700998	PCBP4	chr3	52001483	+	PCBP4	chr3	51999688	+
intron-intron	ENST00000367549	ENST00000324331		ChiTaRS3.1			BF957208	DHX9	chr1	182850402	-	FARS2	chr6	5750963	-
intron-intron	ENST00000367549	ENST00000274680		ChiTaRS3.1			BF957208	DHX9	chr1	182850402	-	FARS2	chr6	5750963	-
intron-intron	ENST00000485081	ENST00000324331		ChiTaRS3.1			BF957208	DHX9	chr1	182850402	-	FARS2	chr6	5750963	-
intron-intron	ENST00000485081	ENST00000274680		ChiTaRS3.1			BF957208	DHX9	chr1	182850402	-	FARS2	chr6	5750963	-
intron-3CDS	ENST00000377897	ENST00000309955		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000443227		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000341222		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000340870		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000355558		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000341582		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000342795		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000395148		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000377897	ENST00000423241		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377897	ENST00000490965		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377897	ENST00000440180		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377897	ENST00000457277		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377897	ENST00000494258		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377897	ENST00000479953		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000309955		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000443227		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000341222		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000340870		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000355558		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000341582		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000342795		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000395148		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000294179	ENST00000423241		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000294179	ENST00000490965		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000294179	ENST00000440180		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000294179	ENST00000457277		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000294179	ENST00000494258		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000294179	ENST00000479953		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000309955		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000443227		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000341222		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000340870		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000355558		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000341582		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000342795		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000395148		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000394690	ENST00000423241		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000394690	ENST00000490965		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000394690	ENST00000440180		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000394690	ENST00000457277		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000394690	ENST00000494258		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000394690	ENST00000479953		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000309955		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000443227		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000341222		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000340870		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000355558		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000341582		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000342795		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000395148		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-3CDS	ENST00000541317	ENST00000423241		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000541317	ENST00000490965		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000541317	ENST00000440180		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000541317	ENST00000457277		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000541317	ENST00000494258		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000541317	ENST00000479953		ChiTaRS3.1			BF734648	STX5	chr11	62574926	-	CFLAR	chr2	202000795	-
intron-intron	ENST00000377044	ENST00000377044		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000377044	ENST00000377066		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000377044	ENST00000396272		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000377066	ENST00000377044		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000377066	ENST00000377066		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000377066	ENST00000396272		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000396272	ENST00000377044		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000396272	ENST00000377066		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-intron	ENST00000396272	ENST00000396272		ChiTaRS3.1			BE079598	TMEM2	chr9	74341963	+	TMEM2	chr9	74341979	-
intron-3UTR	ENST00000398399	ENST00000368465		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-3UTR	ENST00000398399	ENST00000368463		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000398399	ENST00000539880		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000398399	ENST00000542459		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000398399	ENST00000368460		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000398399	ENST00000498553		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-3UTR	ENST00000383698	ENST00000368465		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-3UTR	ENST00000383698	ENST00000368463		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000383698	ENST00000539880		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000383698	ENST00000542459		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000383698	ENST00000368460		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000383698	ENST00000498553		ChiTaRS3.1			BG621848	VGLL3	chr3	87000303	-	PBXIP1	chr1	154916876	-
intron-intron	ENST00000324896	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000324896	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000324896	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000324896	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000324896	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000324896	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000353920	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000346152	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000416070	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000443166	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000324896		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000353920		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000346152		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000416070		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000443166		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-intron	ENST00000438130	ENST00000438130		ChiTaRS3.1			DW409398	GTF2I	chr7	74134894	+	GTF2I	chr7	74133731	+
intron-3UTR	ENST00000408442	ENST00000319211		ChiTaRS3.1			BU677108	MIR548G	chr3	99516394	-	F2R	chr5	76031016	-
intron-intron	ENST00000408442	ENST00000505600		ChiTaRS3.1			BU677108	MIR548G	chr3	99516394	-	F2R	chr5	76031016	-
5UTR-intron	ENST00000323851	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000323851	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000323851	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000323851	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000323851	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000354944	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000354944	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000354944	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000354944	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000354944	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000521414	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000521414	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000521414	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000521414	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000521414	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000537882	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000537882	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000537882	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000537882	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000537882	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000414097	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000414097	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000414097	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000414097	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
intron-intron	ENST00000414097	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518176	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518176	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518176	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518176	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518176	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000522476	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000522476	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000522476	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000522476	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000522476	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518066	ENST00000374431		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518066	ENST00000541779		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518066	ENST00000374430		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518066	ENST00000358883		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
5UTR-intron	ENST00000518066	ENST00000538760		ChiTaRS3.1			DA327368	NDRG1	chr8	134309376	-	LPAR1	chr9	113799060	-
3UTR-3CDS	ENST00000436066	ENST00000360876		ChiTaRS3.1			AI909918	PLEKHF1	chr19	30166214	-	EIF3B	chr7	2419072	+
3UTR-3CDS	ENST00000436066	ENST00000397011		ChiTaRS3.1			AI909918	PLEKHF1	chr19	30166214	-	EIF3B	chr7	2419072	+
intron-3CDS	ENST00000592810	ENST00000360876		ChiTaRS3.1			AI909918	PLEKHF1	chr19	30166214	-	EIF3B	chr7	2419072	+
intron-3CDS	ENST00000592810	ENST00000397011		ChiTaRS3.1			AI909918	PLEKHF1	chr19	30166214	-	EIF3B	chr7	2419072	+
3UTR-3UTR	ENST00000397981	ENST00000397981		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397981	ENST00000545011		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397981	ENST00000397983		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397981	ENST00000397979		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000545011	ENST00000397981		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000545011	ENST00000545011		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000545011	ENST00000397983		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000545011	ENST00000397979		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397983	ENST00000397981		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397983	ENST00000545011		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397983	ENST00000397983		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397983	ENST00000397979		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397979	ENST00000397981		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397979	ENST00000545011		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397979	ENST00000397983		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
3UTR-3UTR	ENST00000397979	ENST00000397979		ChiTaRS3.1			AW072158	MAP2K7	chr19	7978422	-	MAP2K7	chr19	7979080	-
intron-intron	ENST00000535206	ENST00000535206		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-3UTR	ENST00000535206	ENST00000379731		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-intron	ENST00000535206	ENST00000541851		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-intron	ENST00000379731	ENST00000535206		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-3UTR	ENST00000379731	ENST00000379731		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-intron	ENST00000379731	ENST00000541851		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-intron	ENST00000541851	ENST00000535206		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-3UTR	ENST00000541851	ENST00000379731		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
intron-intron	ENST00000541851	ENST00000541851		ChiTaRS3.1			BE939488	B4GALT1	chr9	33110908	+	B4GALT1	chr9	33110977	-
3UTR-intron	ENST00000275532	ENST00000378119		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
3UTR-intron	ENST00000275532	ENST00000540769		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
3UTR-intron	ENST00000275532	ENST00000378102		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000378119		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000540769		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000443322	ENST00000378102		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000378119		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000540769		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000510829	ENST00000378102		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000378119		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000540769		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000380828	ENST00000378102		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000378119		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000540769		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-intron	ENST00000451741	ENST00000378102		ChiTaRS3.1			AA131458	KCTD7	chr7	66105704	+	C6orf62	chr6	24711790	-
intron-3UTR	ENST00000376281	ENST00000262113		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376281	ENST00000523438		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376281	ENST00000520298		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376263	ENST00000262113		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376263	ENST00000523438		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376263	ENST00000520298		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376264	ENST00000262113		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376264	ENST00000523438		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000376264	ENST00000520298		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000351839	ENST00000262113		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000351839	ENST00000523438		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000351839	ENST00000520298		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000360384	ENST00000262113		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000360384	ENST00000523438		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-3UTR	ENST00000360384	ENST00000520298		ChiTaRS3.1			BF930538	HNRNPK	chr9	86592673	+	MYOM2	chr8	2092964	+
intron-5UTR	ENST00000419022	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000419022	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000419022	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000419022	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000419022	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000419022	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000419022	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000419022	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000419022	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379132	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379132	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379132	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379132	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379132	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379132	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379132	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379132	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379132	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379129	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379129	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379129	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379129	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379129	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379129	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379129	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379129	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379129	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379107	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379107	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379107	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379107	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379107	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379107	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379107	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379107	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379107	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000241001	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000241001	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000241001	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000241001	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000241001	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000241001	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000241001	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000241001	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000241001	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379115	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379115	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379115	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379115	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379115	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379115	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379115	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379115	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379115	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379111	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379111	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379111	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379111	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379111	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379111	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379111	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379111	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379111	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379123	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379123	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379123	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379123	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379123	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379123	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379123	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000379123	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000379123	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000533156	ENST00000419022		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000533156	ENST00000379132		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000533156	ENST00000379129		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000533156	ENST00000379107		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000533156	ENST00000241001		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000533156	ENST00000379115		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000533156	ENST00000379111		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-5UTR	ENST00000533156	ENST00000379123		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
intron-intron	ENST00000533156	ENST00000533156		ChiTaRS3.1			W21798	PAX6	chr11	31832870	+	PAX6	chr11	31832531	-
5CDS-5UTR	ENST00000356530	ENST00000513973		ChiTaRS3.1			BP314848	HIST1H2BE	chr6	26184456	+	PGM3	chr6	83902978	-
5CDS-intron	ENST00000356530	ENST00000512866		ChiTaRS3.1			BP314848	HIST1H2BE	chr6	26184456	+	PGM3	chr6	83902978	-
5CDS-5UTR	ENST00000356530	ENST00000283977		ChiTaRS3.1			BP314848	HIST1H2BE	chr6	26184456	+	PGM3	chr6	83902978	-
5CDS-intron	ENST00000356530	ENST00000506587		ChiTaRS3.1			BP314848	HIST1H2BE	chr6	26184456	+	PGM3	chr6	83902978	-
Frame-shit	ENST00000372134	ENST00000529681		ChiTaRS3.1			BQ320008	GHITM	chr10	85903812	+	MUC5B	chr11	1263829	-
Frame-shit	ENST00000372134	ENST00000447027		ChiTaRS3.1			BQ320008	GHITM	chr10	85903812	+	MUC5B	chr11	1263829	-
5CDS-intron	ENST00000372134	ENST00000531082		ChiTaRS3.1			BQ320008	GHITM	chr10	85903812	+	MUC5B	chr11	1263829	-
intron-3CDS	ENST00000299314	ENST00000299314		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000299314	ENST00000549940		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000299314	ENST00000392919		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000299314	ENST00000549165		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000549940	ENST00000299314		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000549940	ENST00000549940		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000549940	ENST00000392919		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000549940	ENST00000549165		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000392919	ENST00000299314		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000392919	ENST00000549940		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000392919	ENST00000392919		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000392919	ENST00000549165		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000549165	ENST00000299314		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-3CDS	ENST00000549165	ENST00000549940		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000549165	ENST00000392919		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
intron-intron	ENST00000549165	ENST00000549165		ChiTaRS3.1			BE164968	GNPTAB	chr12	102163905	+	GNPTAB	chr12	102164299	-
3UTR-3CDS	ENST00000500949	ENST00000296181		ChiTaRS3.1			DA453768	OIP5-AS1	chr15	41578299	+	ITGB5	chr3	124578293	-
3UTR-intron	ENST00000500949	ENST00000461306		ChiTaRS3.1			DA453768	OIP5-AS1	chr15	41578299	+	ITGB5	chr3	124578293	-
intron-5UTR	ENST00000372954	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372954	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372954	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372954	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372954	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372954	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372954	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372954	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372954	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372954	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000393608	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000393608	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000393608	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000393608	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000393608	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000393608	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000393608	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000393608	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000393608	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000393608	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000541172	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000541172	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000541172	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000541172	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000541172	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000541172	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000541172	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000541172	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000541172	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000541172	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000357558	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000357558	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000357558	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000357558	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000357558	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000357558	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000357558	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000357558	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000357558	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000357558	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000325721	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000325721	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000325721	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000325721	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000325721	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000325721	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000325721	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000325721	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000325721	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000325721	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000538431	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000538431	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000538431	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000538431	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000538431	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000538431	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000538431	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000538431	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000538431	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000538431	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000277465	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000277465	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000277465	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000277465	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000277465	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000277465	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000277465	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000277465	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000277465	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000277465	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372948	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372948	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372948	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372948	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372948	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372948	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372948	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372948	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372948	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372948	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372938	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372938	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372938	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372938	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372938	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372938	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372938	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372938	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000372938	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000372938	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000476727	ENST00000372954		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000476727	ENST00000393608		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000476727	ENST00000541172		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000476727	ENST00000357558		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000476727	ENST00000325721		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000476727	ENST00000538431		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000476727	ENST00000277465		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000476727	ENST00000372948		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-5UTR	ENST00000476727	ENST00000372938		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000476727	ENST00000476727		ChiTaRS3.1			CV803618	CIZ1	chr9	130928454	+	CIZ1	chr9	130953839	-
intron-intron	ENST00000361368	ENST00000271469		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361368	ENST00000367926		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361368	ENST00000476240		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361368	ENST00000367924		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361368	ENST00000367925		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361125	ENST00000271469		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361125	ENST00000367926		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361125	ENST00000476240		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361125	ENST00000367924		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000361125	ENST00000367925		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000480055	ENST00000271469		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000480055	ENST00000367926		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000480055	ENST00000476240		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000480055	ENST00000367924		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-intron	ENST00000480055	ENST00000367925		ChiTaRS3.1			AL042818	SMURF1	chr7	98647605	+	UAP1	chr1	162566157	+
intron-5UTR	ENST00000472824	ENST00000472824		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000472824	ENST00000313146		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000472824	ENST00000368219		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-5UTR	ENST00000313146	ENST00000472824		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000313146	ENST00000313146		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000313146	ENST00000368219		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-5UTR	ENST00000368219	ENST00000472824		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000368219	ENST00000313146		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000368219	ENST00000368219		ChiTaRS3.1			AW848738	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
5UTR-3CDS	ENST00000502597	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
intron-3CDS	ENST00000543050	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000543587	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
intron-3CDS	ENST00000543015	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000545680	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000227618	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
intron-3CDS	ENST00000542531	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000535234	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000545944	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5UTR-3CDS	ENST00000538393	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
intron-3CDS	ENST00000535503	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
intron-3CDS	ENST00000538919	ENST00000498907		ChiTaRS3.1			X87248	ANAPC15	chr11	71823701	-	CEBPA	chr19	33793206	-
5CDS-5UTR	ENST00000254928	ENST00000254928		ChiTaRS3.1			BP353068	ERAL1	chr17	27183553	+	ERAL1	chr17	27182036	+
5CDS-intron	ENST00000254928	ENST00000578001		ChiTaRS3.1			BP353068	ERAL1	chr17	27183553	+	ERAL1	chr17	27182036	+
3UTR-5UTR	ENST00000578001	ENST00000254928		ChiTaRS3.1			BP353068	ERAL1	chr17	27183553	+	ERAL1	chr17	27182036	+
3UTR-intron	ENST00000578001	ENST00000578001		ChiTaRS3.1			BP353068	ERAL1	chr17	27183553	+	ERAL1	chr17	27182036	+
intron-intron	ENST00000344099	ENST00000256854		ChiTaRS3.1			AW887048	ZNF14	chr19	19843479	+	NARS	chr18	55283996	-
intron-intron	ENST00000344099	ENST00000423481		ChiTaRS3.1			AW887048	ZNF14	chr19	19843479	+	NARS	chr18	55283996	-
intron-intron	ENST00000334256	ENST00000263274		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000334256	ENST00000536218		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000334256	ENST00000427526		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000334256	ENST00000599165		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000469804	ENST00000263274		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000469804	ENST00000536218		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000469804	ENST00000427526		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000469804	ENST00000599165		ChiTaRS3.1			AW391238	KPNA4	chr3	160214275	+	LIG1	chr19	48623781	+
intron-intron	ENST00000438132	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000438132	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000542263	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000542263	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000417362	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000417362	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000251143	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000251143	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000543152	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000543152	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000448695	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000448695	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000544275	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000544275	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000538853	ENST00000367519		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000538853	ENST00000496228		ChiTaRS3.1			BE929838	C16orf62	chr16	19700115	-	EPM2A	chr6	146023935	+
intron-intron	ENST00000406785	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406785	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542756	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000403092	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405901	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000402441	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000405269	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000542024	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000332839	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000406391	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000406785		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000542756		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000403092		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000405901		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000402441		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000405269		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000542024		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000332839		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000406391		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-intron	ENST00000408028	ENST00000408028		ChiTaRS3.1			AW452398	SLC8A1	chr2	40657444	+	SLC8A1	chr2	40655613	+
intron-3CDS	ENST00000316403	ENST00000358704		ChiTaRS3.1			AI634048	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000546343	ENST00000358704		ChiTaRS3.1			AI634048	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000560366	ENST00000358704		ChiTaRS3.1			AI634048	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000405140	ENST00000358704		ChiTaRS3.1			AI634048	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-3CDS	ENST00000523500	ENST00000358704		ChiTaRS3.1			AI634048	CLU	chr8	27455605	+	ZBTB18	chr1	244217614	-
intron-intron	ENST00000264018	ENST00000267485		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000264018	ENST00000334342		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000534980	ENST00000267485		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000534980	ENST00000334342		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000526070	ENST00000267485		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000526070	ENST00000334342		ChiTaRS3.1			BF085678	DDX6	chr11	118636246	+	C14orf37	chr14	58760276	+
intron-intron	ENST00000361339	ENST00000481781		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-intron	ENST00000361339	ENST00000397270		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-intron	ENST00000426508	ENST00000481781		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-intron	ENST00000426508	ENST00000397270		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-intron	ENST00000439987	ENST00000481781		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-intron	ENST00000439987	ENST00000397270		ChiTaRS3.1			BI036278	IFT140	chr16	1590268	+	INS-IGF2	chr11	2150826	-
intron-3CDS	ENST00000400454	ENST00000400454		ChiTaRS3.1			BF948548	DSCAM	chr21	41648170	+	DSCAM	chr21	41668060	-
3UTR-3CDS	ENST00000409785	ENST00000409785		ChiTaRS3.1			CN478588	KCMF1	chr2	85280825	-	KCMF1	chr2	85280413	+
In-frame	ENST00000575270	ENST00000575270		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000575270	ENST00000349223		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000575270	ENST00000329524		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000575270	ENST00000346183		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
5CDS-3UTR	ENST00000575270	ENST00000535127		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000349223	ENST00000575270		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000349223	ENST00000349223		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000349223	ENST00000329524		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000349223	ENST00000346183		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
5CDS-3UTR	ENST00000349223	ENST00000535127		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000329524	ENST00000575270		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000329524	ENST00000349223		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000329524	ENST00000329524		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000329524	ENST00000346183		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
5CDS-3UTR	ENST00000329524	ENST00000535127		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000346183	ENST00000575270		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000346183	ENST00000349223		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000346183	ENST00000329524		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
In-frame	ENST00000346183	ENST00000346183		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
5CDS-3UTR	ENST00000346183	ENST00000535127		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
3UTR-3CDS	ENST00000535127	ENST00000575270		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
3UTR-3CDS	ENST00000535127	ENST00000349223		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
3UTR-3CDS	ENST00000535127	ENST00000329524		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
3UTR-3CDS	ENST00000535127	ENST00000346183		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
3UTR-3UTR	ENST00000535127	ENST00000535127		ChiTaRS3.1			CF137418	NFATC3	chr16	68225195	-	NFATC3	chr16	68224770	+
5CDS-intron	ENST00000373627	ENST00000379388		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-intron	ENST00000373627	ENST00000484210		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-intron	ENST00000373627	ENST00000541134		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-intron	ENST00000373616	ENST00000379388		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-intron	ENST00000373616	ENST00000484210		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-intron	ENST00000373616	ENST00000541134		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000471737	ENST00000379388		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000471737	ENST00000484210		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000471737	ENST00000541134		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000538808	ENST00000379388		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000538808	ENST00000484210		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
intron-intron	ENST00000538808	ENST00000541134		ChiTaRS3.1			CN305548	MTCH1	chr6	36935917	-	HIVEP1	chr6	12058443	+
5CDS-3UTR	ENST00000321562	ENST00000321562		ChiTaRS3.1			BE938578	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000321562	ENST00000544340		ChiTaRS3.1			BE938578	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000544340	ENST00000321562		ChiTaRS3.1			BE938578	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
5CDS-3UTR	ENST00000544340	ENST00000544340		ChiTaRS3.1			BE938578	FKBP10	chr17	39977286	-	FKBP10	chr17	39978954	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000380121	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000504114	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000357505	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000399396	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000446957	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-5UTR	ENST00000267068	ENST00000399396		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			AU117208	N4BP2L2	chr13	33099205	-	N4BP2L2	chr13	33112929	-
intron-3CDS	ENST00000400099	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400099	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400099	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400099	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400099	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000400094	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400094	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400094	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400094	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400094	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000284971	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000284971	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000284971	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000284971	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000284971	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000457143	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000457143	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000457143	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000457143	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000457143	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000400090	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400090	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400090	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400090	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400090	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000400087	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400087	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400087	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400087	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400087	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-3CDS	ENST00000400093	ENST00000346798		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000354192		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000348990		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000357903		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000358918		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000359726		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400093	ENST00000448388		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400093	ENST00000440126		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-intron	ENST00000400093	ENST00000439274		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
intron-5UTR	ENST00000400093	ENST00000474136		ChiTaRS3.1			DA242038	ATP5J	chr21	27107384	+	APP	chr21	27484464	-
3UTR-3UTR	ENST00000537098	ENST00000537098		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000537098	ENST00000539778		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-intron	ENST00000537098	ENST00000566513		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000537098	ENST00000398040		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000539778	ENST00000537098		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000539778	ENST00000539778		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-intron	ENST00000539778	ENST00000566513		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000539778	ENST00000398040		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
intron-3UTR	ENST00000566513	ENST00000537098		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
intron-3UTR	ENST00000566513	ENST00000539778		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
intron-intron	ENST00000566513	ENST00000566513		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
intron-3UTR	ENST00000566513	ENST00000398040		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000398040	ENST00000537098		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000398040	ENST00000539778		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-intron	ENST00000398040	ENST00000566513		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
3UTR-3UTR	ENST00000398040	ENST00000398040		ChiTaRS3.1			CN255578	CMIP	chr16	81744043	-	CMIP	chr16	81743702	+
intron-intron	ENST00000476844	ENST00000538303		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000476844	ENST00000379343		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000476844	ENST00000357055		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000476844	ENST00000435660		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000476844	ENST00000282587		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000476844	ENST00000406369		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-intron	ENST00000492590	ENST00000538303		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000492590	ENST00000379343		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000492590	ENST00000357055		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000492590	ENST00000435660		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000492590	ENST00000282587		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000492590	ENST00000406369		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-intron	ENST00000466788	ENST00000538303		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000466788	ENST00000379343		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000466788	ENST00000357055		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000466788	ENST00000435660		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000466788	ENST00000282587		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000466788	ENST00000406369		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-intron	ENST00000468189	ENST00000538303		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000468189	ENST00000379343		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000468189	ENST00000357055		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000468189	ENST00000435660		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000468189	ENST00000282587		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000468189	ENST00000406369		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-intron	ENST00000341848	ENST00000538303		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000341848	ENST00000379343		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000341848	ENST00000357055		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000341848	ENST00000435660		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000341848	ENST00000282587		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-3UTR	ENST00000341848	ENST00000406369		ChiTaRS3.1			BX951598	FHIT	chr3	60507277	-	SLC30A6	chr2	32446494	+
intron-intron	ENST00000604938	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401010	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000339388	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000369323	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000605317	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000479926	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000604894	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401009	ENST00000369219		ChiTaRS3.1			BC018768	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000441724	ENST00000262570		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000448878		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000476546		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
intron-intron	ENST00000441724	ENST00000542753		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000262570		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000448878		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000476546		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
3UTR-intron	ENST00000429480	ENST00000542753		ChiTaRS3.1			R08848	LINC00337	chr1	6299315	-	CHCHD3	chr7	132649873	+
In-frame	ENST00000367889	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367889	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367889	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367889	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367889	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367889	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367888	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367888	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367888	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367888	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367888	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367888	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367885	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367885	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367885	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367885	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367885	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367885	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367884	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367884	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367884	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367884	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367884	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367884	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367883	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367883	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367883	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367883	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367883	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367883	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367886	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367886	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367886	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367886	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
In-frame	ENST00000367886	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
5CDS-intron	ENST00000367886	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-3CDS	ENST00000461759	ENST00000393328		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-3CDS	ENST00000461759	ENST00000393331		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-3CDS	ENST00000461759	ENST00000347630		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-3CDS	ENST00000461759	ENST00000504102		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-3CDS	ENST00000461759	ENST00000503676		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
intron-intron	ENST00000461759	ENST00000513080		ChiTaRS3.1			DW407758	MGST3	chr1	165621237	+	SPOP	chr17	47679312	-
3UTR-3UTR	ENST00000370283	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370283	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370283	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000547204	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000547204	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000547204	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000519604	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-3UTR	ENST00000519604	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
intron-intron	ENST00000519604	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000519273	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000519273	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000519273	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370275	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000370275	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000370275	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000353546	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000353546	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000353546	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000518794	ENST00000370283		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000547204		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000519604		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000519273		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-3UTR	ENST00000518794	ENST00000370275		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000353546		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
3UTR-intron	ENST00000518794	ENST00000518794		ChiTaRS3.1			AA456448	ARFGAP1	chr20	61919533	-	ARFGAP1	chr20	61921078	-
Frame-shit	ENST00000376929	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000376929	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000376929	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000376929	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000376929	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000376929	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-3CDS	ENST00000506690	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000506690	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000506690	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000506690	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000506690	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000506690	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
Frame-shit	ENST00000389805	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000389805	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000389805	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000389805	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000389805	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000389805	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
Frame-shit	ENST00000402874	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000402874	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000402874	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000402874	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000402874	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000402874	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-3CDS	ENST00000510187	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000510187	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000510187	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000510187	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000510187	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
intron-intron	ENST00000510187	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
Frame-shit	ENST00000360718	ENST00000376929		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000360718	ENST00000506690		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000360718	ENST00000389805		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000360718	ENST00000402874		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000360718	ENST00000510187		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-intron	ENST00000360718	ENST00000360718		ChiTaRS3.1			CK003998	SQSTM1	chr5	179263449	-	SQSTM1	chr5	179252144	+
5CDS-3UTR	ENST00000361314	ENST00000367976		ChiTaRS3.1			CV329008	GPX7	chr1	53074032	+	CTGF	chr6	132270134	-
intron-3UTR	ENST00000459779	ENST00000367976		ChiTaRS3.1			CV329008	GPX7	chr1	53074032	+	CTGF	chr6	132270134	-
intron-intron	ENST00000324896	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000324896	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000324896	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000324896	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000324896	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000324896	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000353920	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000346152	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000416070	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000443166	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000324896		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000353920		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000346152		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000416070		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000443166		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
intron-intron	ENST00000438130	ENST00000438130		ChiTaRS3.1			BE172158	GTF2I	chr7	74077902	-	GTF2I	chr7	74097909	-
5CDS-intron	ENST00000447274	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000447274	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000447274	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000447274	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-5UTR	ENST00000447274	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000447274	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000511455	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000511455	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000511455	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000511455	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-5UTR	ENST00000511455	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000511455	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000308440	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000308440	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000308440	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000308440	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-5UTR	ENST00000308440	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000308440	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000514166	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000514166	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000514166	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000514166	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-5UTR	ENST00000514166	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000514166	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000515828	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000515828	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000515828	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000515828	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-5UTR	ENST00000515828	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000515828	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-intron	ENST00000504236	ENST00000447274		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-intron	ENST00000504236	ENST00000511455		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-intron	ENST00000504236	ENST00000308440		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-intron	ENST00000504236	ENST00000514166		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-5UTR	ENST00000504236	ENST00000515828		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
intron-intron	ENST00000504236	ENST00000504236		ChiTaRS3.1			BI054238	ANKRD13D	chr11	67069265	-	ANKRD13D	chr11	67068436	+
5CDS-intron	ENST00000311506	ENST00000458479		ChiTaRS3.1			BC017768	METTL2A	chr17	60501675	+	PAXBP1-AS1	chr21	34127666	-
5CDS-intron	ENST00000311506	ENST00000440052		ChiTaRS3.1			BC017768	METTL2A	chr17	60501675	+	PAXBP1-AS1	chr21	34127666	-
5CDS-intron	ENST00000311506	ENST00000455170		ChiTaRS3.1			BC017768	METTL2A	chr17	60501675	+	PAXBP1-AS1	chr21	34127666	-
intron-3CDS	ENST00000421807	ENST00000313833		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000421807	ENST00000555087		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000421807	ENST00000440021		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-3CDS	ENST00000406424	ENST00000313833		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000406424	ENST00000555087		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000406424	ENST00000440021		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-3CDS	ENST00000320345	ENST00000313833		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000320345	ENST00000555087		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000320345	ENST00000440021		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-3CDS	ENST00000397335	ENST00000313833		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000397335	ENST00000555087		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000397335	ENST00000440021		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-3CDS	ENST00000542125	ENST00000313833		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000542125	ENST00000555087		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
intron-intron	ENST00000542125	ENST00000440021		ChiTaRS3.1			AI309778	INPP5K	chr17	1416801	-	FBXO34	chr14	55819178	+
5UTR-3CDS	ENST00000598742	ENST00000250784		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
5UTR-3UTR	ENST00000598742	ENST00000477725		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
intron-3CDS	ENST00000221975	ENST00000250784		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
intron-3UTR	ENST00000221975	ENST00000477725		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
intron-3CDS	ENST00000593863	ENST00000250784		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
intron-3UTR	ENST00000593863	ENST00000477725		ChiTaRS3.1			AW300778	RPS19	chr19	42364325	-	RPS4Y1	chrY	2734859	+
intron-intron	ENST00000582151	ENST00000582151		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000582151	ENST00000250124		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000582151	ENST00000396501		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000582151	ENST00000423172		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000250124	ENST00000582151		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000250124	ENST00000250124		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000250124	ENST00000396501		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000250124	ENST00000423172		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000396501	ENST00000582151		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000396501	ENST00000250124		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000396501	ENST00000396501		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000396501	ENST00000423172		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000423172	ENST00000582151		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000423172	ENST00000250124		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000423172	ENST00000396501		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
intron-intron	ENST00000423172	ENST00000423172		ChiTaRS3.1			CN275848	MPDU1	chr17	7491724	-	MPDU1	chr17	7492423	-
5CDS-5UTR	ENST00000369817	ENST00000265465		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-5UTR	ENST00000369817	ENST00000541089		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-intron	ENST00000369817	ENST00000534785		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
intron-5UTR	ENST00000479366	ENST00000265465		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
intron-5UTR	ENST00000479366	ENST00000541089		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
intron-intron	ENST00000479366	ENST00000534785		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-5UTR	ENST00000424325	ENST00000265465		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-5UTR	ENST00000424325	ENST00000541089		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-intron	ENST00000424325	ENST00000534785		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-5UTR	ENST00000406022	ENST00000265465		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-5UTR	ENST00000406022	ENST00000541089		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
5CDS-intron	ENST00000406022	ENST00000534785		ChiTaRS3.1			BC015618	RPL10	chrX	153628152	-	POLA2	chr11	65029451	+
intron-3CDS	ENST00000601387	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000601387	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000597595	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000597595	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000598034	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000598034	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000600322	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000600322	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000602185	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000602185	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000253054	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000253054	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000594700	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000594700	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000595636	ENST00000330720		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000595636	ENST00000597017		ChiTaRS3.1			BQ775128	GMFG	chr19	39819706	+	KDELR1	chr19	48892846	-
intron-3CDS	ENST00000317552	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000317552	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000317552	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000453318	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000453318	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000453318	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380779	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380779	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000380779	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380780	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380780	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000380780	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380785	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380785	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000380785	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380787	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380787	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000380787	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380782	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000380782	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000380782	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000479925	ENST00000414242		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-3CDS	ENST00000479925	ENST00000361479		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000479925	ENST00000496525		ChiTaRS3.1			BF083688	MID1	chrX	11101701	-	MPHOSPH8	chr13	20242588	+
intron-intron	ENST00000394156	ENST00000578382		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000394156	ENST00000583560		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000268603	ENST00000578382		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000268603	ENST00000583560		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000566827	ENST00000578382		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000566827	ENST00000583560		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000569624	ENST00000578382		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000569624	ENST00000583560		ChiTaRS3.1			BF901138	CDH11	chr16	64988450	+	MYO15B	chr17	73587659	+
intron-intron	ENST00000304312	ENST00000451020		ChiTaRS3.1			DB215628	ATP5I	chr4	667766	+	ABCA11P	chr4	438223	-
intron-intron	ENST00000506525	ENST00000451020		ChiTaRS3.1			DB215628	ATP5I	chr4	667766	+	ABCA11P	chr4	438223	-
intron-3UTR	ENST00000446256	ENST00000253408		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000588735		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000435360		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000586793		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000591327		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000445061	ENST00000253408		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000588735		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000435360		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000586793		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000591327		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000476446	ENST00000253408		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000588735		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000435360		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000586793		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000591327		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000348968	ENST00000253408		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000588735		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000435360		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000586793		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000591327		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000457607	ENST00000253408		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000588735		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000435360		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000586793		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000591327		ChiTaRS3.1			M78128	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000381312	ENST00000367279		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381312	ENST00000309017		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381312	ENST00000308986		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381312	ENST00000544762		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381312	ENST00000543735		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381312	ENST00000492977		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381310	ENST00000367279		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381310	ENST00000309017		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381310	ENST00000308986		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381310	ENST00000544762		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381310	ENST00000543735		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381310	ENST00000492977		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381305	ENST00000367279		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381305	ENST00000309017		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000381305	ENST00000308986		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381305	ENST00000544762		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381305	ENST00000543735		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000381305	ENST00000492977		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000469464	ENST00000367279		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000469464	ENST00000309017		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000469464	ENST00000308986		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000469464	ENST00000544762		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000469464	ENST00000543735		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-intron	ENST00000469464	ENST00000492977		ChiTaRS3.1			BI837348	ADARB2	chr10	1442111	-	PTPN7	chr1	202117308	+
intron-3UTR	ENST00000470487	ENST00000274353		ChiTaRS3.1			EB362708	GOLIM4	chr3	167749781	+	BHMT	chr5	78427785	-
intron-intron	ENST00000470487	ENST00000524080		ChiTaRS3.1			EB362708	GOLIM4	chr3	167749781	+	BHMT	chr5	78427785	-
intron-3UTR	ENST00000309027	ENST00000274353		ChiTaRS3.1			EB362708	GOLIM4	chr3	167749781	+	BHMT	chr5	78427785	-
intron-intron	ENST00000309027	ENST00000524080		ChiTaRS3.1			EB362708	GOLIM4	chr3	167749781	+	BHMT	chr5	78427785	-
intron-3UTR	ENST00000259199	ENST00000344063		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000431533		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000428193		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558815		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000259199	ENST00000560583		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000560055		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000559463		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558131		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558752		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000458349		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000344063		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000431533		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000428193		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558815		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000560583		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000560055		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000559463		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558131		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558752		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000458349		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000344063		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000431533		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000428193		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558815		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000560583		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000560055		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000559463		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558131		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558752		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000458349		ChiTaRS3.1			BQ645838	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
3UTR-3UTR	ENST00000262053	ENST00000262053		ChiTaRS3.1			BM452878	ATF1	chr12	51214778	-	ATF1	chr12	51214814	+
3UTR-intron	ENST00000262053	ENST00000539132		ChiTaRS3.1			BM452878	ATF1	chr12	51214778	-	ATF1	chr12	51214814	+
intron-3UTR	ENST00000539132	ENST00000262053		ChiTaRS3.1			BM452878	ATF1	chr12	51214778	-	ATF1	chr12	51214814	+
intron-intron	ENST00000539132	ENST00000539132		ChiTaRS3.1			BM452878	ATF1	chr12	51214778	-	ATF1	chr12	51214814	+
intron-3CDS	ENST00000397786	ENST00000397786		ChiTaRS3.1			BE694388	MED13	chr17	60072726	+	MED13	chr17	60088437	-
intron-intron	ENST00000397786	ENST00000580896		ChiTaRS3.1			BE694388	MED13	chr17	60072726	+	MED13	chr17	60088437	-
intron-3CDS	ENST00000580896	ENST00000397786		ChiTaRS3.1			BE694388	MED13	chr17	60072726	+	MED13	chr17	60088437	-
intron-intron	ENST00000580896	ENST00000580896		ChiTaRS3.1			BE694388	MED13	chr17	60072726	+	MED13	chr17	60088437	-
intron-intron	ENST00000375217	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375217	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375226	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375226	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375267	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375267	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375254	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375254	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375225	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375225	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000429347	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000429347	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375224	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375224	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000543981	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000543981	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000467272	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000467272	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000375218	ENST00000446823		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-3UTR	ENST00000375218	ENST00000328914		ChiTaRS3.1			BE715858	UBR4	chr1	19422058	+	FOXK1	chr7	4804976	+
intron-intron	ENST00000311160	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000311160	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000311160	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000355730	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000355730	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000355730	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000398879	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000398879	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000398879	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000442536	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000442536	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000442536	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000458317	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000458317	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000458317	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000474346	ENST00000367661		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000474346	ENST00000367662		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-intron	ENST00000474346	ENST00000486075		ChiTaRS3.1			AA367908	TNS3	chr7	47342859	-	PAPPA2	chr1	176734964	-
intron-3CDS	ENST00000415912	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000415912	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000357071	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000357071	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000374893	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000374893	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000436918	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000436918	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000264205	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000264205	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000528294	ENST00000431726		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000528294	ENST00000265562		ChiTaRS3.1			R00228	ECE1	chr1	21543878	+	PTPN23	chr3	47454341	-
intron-3CDS	ENST00000537403	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000537403	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000537403	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000537403	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000537403	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000537403	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000537403	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000537403	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000307712	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000307712	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000307712	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000307712	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000307712	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000307712	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000307712	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000307712	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000536508	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000536508	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000536508	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000536508	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000536508	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000536508	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000536508	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000536508	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000545328	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000545328	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000545328	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000545328	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000545328	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000545328	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000545328	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000545328	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553925	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553925	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553925	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553925	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553925	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553925	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553925	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553925	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000548032	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000548032	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000548032	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000548032	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000548032	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000548032	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000548032	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000548032	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000557280	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000557280	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000557280	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000557280	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000557280	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000557280	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000557280	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000557280	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553970	ENST00000537403		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553970	ENST00000307712		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553970	ENST00000536508		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3CDS	ENST00000553970	ENST00000545328		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553970	ENST00000553925		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553970	ENST00000548032		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553970	ENST00000557280		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-intron	ENST00000553970	ENST00000553970		ChiTaRS3.1			F00808	SEC23A	chr14	39502056	+	SEC23A	chr14	39524489	-
intron-3UTR	ENST00000272438	ENST00000272438		ChiTaRS3.1			BE698518	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-intron	ENST00000272438	ENST00000466731		ChiTaRS3.1			BE698518	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-3UTR	ENST00000466731	ENST00000272438		ChiTaRS3.1			BE698518	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-intron	ENST00000466731	ENST00000466731		ChiTaRS3.1			BE698518	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-3CDS	ENST00000394332	ENST00000366955		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-intron	ENST00000394332	ENST00000467765		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-3CDS	ENST00000394333	ENST00000366955		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-intron	ENST00000394333	ENST00000467765		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-3CDS	ENST00000479035	ENST00000366955		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-intron	ENST00000479035	ENST00000467765		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-3CDS	ENST00000245857	ENST00000366955		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-intron	ENST00000245857	ENST00000467765		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-3CDS	ENST00000577407	ENST00000366955		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-intron	ENST00000577407	ENST00000467765		ChiTaRS3.1			T90988	RPL23	chr17	37006650	+	CENPF	chr1	214819433	-
intron-3CDS	ENST00000419821	ENST00000419821		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000419821	ENST00000392533		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000419821	ENST00000537952		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000419821	ENST00000543709		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000419821	ENST00000536979		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000392533	ENST00000419821		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000392533	ENST00000392533		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000392533	ENST00000537952		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000392533	ENST00000543709		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000392533	ENST00000536979		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000537952	ENST00000419821		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000537952	ENST00000392533		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000537952	ENST00000537952		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000537952	ENST00000543709		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000537952	ENST00000536979		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000543709	ENST00000419821		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000543709	ENST00000392533		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000543709	ENST00000537952		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000543709	ENST00000543709		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000543709	ENST00000536979		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000536979	ENST00000419821		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000536979	ENST00000392533		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-3CDS	ENST00000536979	ENST00000537952		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000536979	ENST00000543709		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
intron-5UTR	ENST00000536979	ENST00000536979		ChiTaRS3.1			BF873678	TAOK3	chr12	118599639	+	TAOK3	chr12	118590105	+
5CDS-intron	ENST00000254108	ENST00000564996		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
5CDS-intron	ENST00000254108	ENST00000258157		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
5CDS-intron	ENST00000380244	ENST00000564996		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
5CDS-intron	ENST00000380244	ENST00000258157		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
5CDS-intron	ENST00000568685	ENST00000564996		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
5CDS-intron	ENST00000568685	ENST00000258157		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
3UTR-intron	ENST00000474990	ENST00000564996		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
3UTR-intron	ENST00000474990	ENST00000258157		ChiTaRS3.1			AW241188	FUS	chr16	31202380	-	KLHL36	chr16	84699843	-
intron-intron	ENST00000296754	ENST00000296754		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000296754	ENST00000443439		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000296754	ENST00000514604		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000443439	ENST00000296754		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000443439	ENST00000443439		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000443439	ENST00000514604		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000514604	ENST00000296754		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000514604	ENST00000443439		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
intron-intron	ENST00000514604	ENST00000514604		ChiTaRS3.1			BE889628	ERAP1	chr5	96254828	-	ERAP1	chr5	96254869	+
5CDS-intron	ENST00000397981	ENST00000371460		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397981	ENST00000371459		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397981	ENST00000371461		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397981	ENST00000306867		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397981	ENST00000371458		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397981	ENST00000459689		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000371460		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000371459		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000371461		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000306867		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000371458		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000545011	ENST00000459689		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000371460		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000371459		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000371461		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000306867		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000371458		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
intron-intron	ENST00000397983	ENST00000459689		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000371460		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000371459		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000371461		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000306867		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000371458		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000397979	ENST00000459689		ChiTaRS3.1			CN277618	MAP2K7	chr19	7979363	+	SUPT3H	chr6	45307240	+
5CDS-intron	ENST00000509122	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000509122	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000509122	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000509122	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000512981	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000512981	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000512981	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000512981	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000396448	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000396448	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000396448	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000396448	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000264312	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000264312	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000264312	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000264312	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000381473	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000381473	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000381473	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000381473	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000444354	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000444354	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000444354	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000444354	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000506801	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000506801	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000506801	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000506801	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000425583	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000425583	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000425583	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000425583	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000508293	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000508293	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000508293	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000508293	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000513391	ENST00000449886		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000513391	ENST00000373464		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000513391	ENST00000373457		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
5CDS-intron	ENST00000513391	ENST00000497064		ChiTaRS3.1			BE172078	OCIAD1	chr4	48859381	+	ZBTB43	chr9	129586854	-
intron-intron	ENST00000373368	ENST00000330597		ChiTaRS3.1			AF130098	SPP2	chr2	234970686	-	HBG1	chr11	5275980	-
intron-intron	ENST00000168148	ENST00000330597		ChiTaRS3.1			AF130098	SPP2	chr2	234970686	-	HBG1	chr11	5275980	-
intron-intron	ENST00000492481	ENST00000330597		ChiTaRS3.1			AF130098	SPP2	chr2	234970686	-	HBG1	chr11	5275980	-
intron-3UTR	ENST00000602540	ENST00000602540		ChiTaRS3.1			BE775108	PHLDA1	chr12	76419759	-	PHLDA1	chr12	76419600	+
intron-3UTR	ENST00000602540	ENST00000266671		ChiTaRS3.1			BE775108	PHLDA1	chr12	76419759	-	PHLDA1	chr12	76419600	+
intron-3UTR	ENST00000266671	ENST00000602540		ChiTaRS3.1			BE775108	PHLDA1	chr12	76419759	-	PHLDA1	chr12	76419600	+
intron-3UTR	ENST00000266671	ENST00000266671		ChiTaRS3.1			BE775108	PHLDA1	chr12	76419759	-	PHLDA1	chr12	76419600	+
intron-intron	ENST00000370951	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370951	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000405432	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370950	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000454435	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000436161	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000484162	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000303635		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000439411		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000476163		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000557126		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000473578		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000467404		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-intron	ENST00000370949	ENST00000476864		ChiTaRS3.1			BU615278	SRSF11	chr1	70716046	-	CAMTA1	chr1	7674470	-
intron-5UTR	ENST00000312962	ENST00000314124		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000312962	ENST00000435575		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000312962	ENST00000435218		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000312962	ENST00000476331		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000312962	ENST00000431022		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000312962	ENST00000264728		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-5UTR	ENST00000361821	ENST00000314124		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000361821	ENST00000435575		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000361821	ENST00000435218		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000361821	ENST00000476331		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000361821	ENST00000431022		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000361821	ENST00000264728		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-5UTR	ENST00000537964	ENST00000314124		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000537964	ENST00000435575		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000537964	ENST00000435218		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000537964	ENST00000476331		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000537964	ENST00000431022		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-intron	ENST00000537964	ENST00000264728		ChiTaRS3.1			BF336708	KRI1	chr19	10672395	+	TMEM40	chr3	12800994	-
intron-3UTR	ENST00000536656	ENST00000460006		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000536656	ENST00000379062		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000536656	ENST00000379070		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000536656	ENST00000535100		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-3UTR	ENST00000377346	ENST00000460006		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000377346	ENST00000379062		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000377346	ENST00000379070		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000377346	ENST00000535100		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-3UTR	ENST00000484851	ENST00000460006		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000484851	ENST00000379062		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000484851	ENST00000379070		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000484851	ENST00000535100		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-3UTR	ENST00000361110	ENST00000460006		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000361110	ENST00000379062		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000361110	ENST00000379070		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000361110	ENST00000535100		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-3UTR	ENST00000543390	ENST00000460006		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000543390	ENST00000379062		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000543390	ENST00000379070		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000543390	ENST00000535100		ChiTaRS3.1			BI020398	PIK3CD	chr1	9784241	-	CDS2	chr20	5173732	+
intron-intron	ENST00000321521	ENST00000514135		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000296595		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000506536		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000512429		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000509387		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000511218		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000321521	ENST00000515293		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000514135		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000296595		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000506536		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000512429		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000509387		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000511218		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000358359	ENST00000515293		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000514135		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000296595		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000506536		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000512429		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000509387		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000511218		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000513500	ENST00000515293		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000514135		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000296595		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000506536		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000512429		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000509387		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000511218		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000414217	ENST00000515293		ChiTaRS3.1			AW999008	PPIP5K2	chr5	102509275	+	TMEM161B	chr5	87534422	-
intron-intron	ENST00000286713	ENST00000426496		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000286713	ENST00000392078		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000286713	ENST00000476522		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000286713	ENST00000367742		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000286713	ENST00000338920		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000538954	ENST00000426496		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000538954	ENST00000392078		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000538954	ENST00000476522		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000538954	ENST00000367742		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000538954	ENST00000338920		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000347359	ENST00000426496		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000347359	ENST00000392078		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000347359	ENST00000476522		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000347359	ENST00000367742		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000347359	ENST00000338920		ChiTaRS3.1			CF595948	STOM	chr9	124115527	-	PRRC2C	chr1	171491821	+
intron-intron	ENST00000485760	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000485760	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000485760	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000485760	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000485760	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000485760	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371236	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371234	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000420954	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000439789	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000414851	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371231	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000269033		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000540801		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000324677		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000582084		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000590153		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-intron	ENST00000371230	ENST00000579954		ChiTaRS3.1			AW378958	DAB1	chr1	58814359	-	SSH2	chr17	28092699	-
intron-3CDS	ENST00000589037	ENST00000222145		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000589037	ENST00000594232		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000253788	ENST00000222145		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000253788	ENST00000594232		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-3CDS	ENST00000589913	ENST00000222145		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-intron	ENST00000589913	ENST00000594232		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000590864	ENST00000222145		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000590864	ENST00000594232		ChiTaRS3.1			CV327308	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000304043	ENST00000398571		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000304043	ENST00000472689		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-3CDS	ENST00000506207	ENST00000398571		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000506207	ENST00000472689		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-3CDS	ENST00000508488	ENST00000398571		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000508488	ENST00000472689		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-3CDS	ENST00000506908	ENST00000398571		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000506908	ENST00000472689		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-3CDS	ENST00000513012	ENST00000398571		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000513012	ENST00000472689		ChiTaRS3.1			DA997458	HINT1	chr5	130498054	-	USP34	chr2	61415659	+
intron-intron	ENST00000462307	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000462307	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000491381	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000342644	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372542	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-intron	ENST00000372541	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000418658		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000397461		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000427331		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000358480		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000397459		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000448906		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
3UTR-intron	ENST00000344780	ENST00000475817		ChiTaRS3.1			DB309558	SNX21	chr20	44470510	+	CNTN4	chr3	2150248	-
intron-3UTR	ENST00000245663	ENST00000373313		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-intron	ENST00000245663	ENST00000396967		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-3UTR	ENST00000395104	ENST00000373313		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-intron	ENST00000395104	ENST00000396967		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-3UTR	ENST00000302995	ENST00000373313		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-intron	ENST00000302995	ENST00000396967		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-3UTR	ENST00000480766	ENST00000373313		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
intron-intron	ENST00000480766	ENST00000396967		ChiTaRS3.1			CD699168	ZBTB46	chr20	62375756	+	MAFB	chr20	39315012	-
3UTR-3CDS	ENST00000446856	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000446856	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000264758	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000264758	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000398125	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000398125	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000513328	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000513328	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000503455	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000503455	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000355842	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000355842	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000398123	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-3CDS	ENST00000398123	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000398129	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000398129	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000538860	ENST00000360566		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
3UTR-3CDS	ENST00000538860	ENST00000304567		ChiTaRS3.1			BQ379268	ADD1	chr4	2931732	-	RRM2	chr2	10263875	+
intron-intron	ENST00000444746	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000444746	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000453091	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000428287	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000243326	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000430328	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000433166	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000444746		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000453091		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000428287		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000243326		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000430328		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000433166		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000457745	ENST00000457745		ChiTaRS3.1			AW937408	RIF1	chr2	152357908	+	RIF1	chr2	152352781	-
intron-intron	ENST00000413330	ENST00000413330		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000413330	ENST00000371703		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000413330	ENST00000489806		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000371703	ENST00000413330		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000371703	ENST00000371703		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000371703	ENST00000489806		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000489806	ENST00000413330		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000489806	ENST00000371703		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000489806	ENST00000489806		ChiTaRS3.1			BM719638	RPP30	chr10	92663152	-	RPP30	chr10	92662585	+
intron-intron	ENST00000369528	ENST00000369528		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000369528	ENST00000060969		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000369528	ENST00000506320		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000369528		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000060969		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000060969	ENST00000506320		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000369528		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000060969		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-intron	ENST00000506320	ENST00000506320		ChiTaRS3.1			BQ189708	SIKE1	chr1	115322429	-	SIKE1	chr1	115322668	+
intron-3CDS	ENST00000266269	ENST00000554998		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000402312		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000335290		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000542471		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000266269	ENST00000554175		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000266269	ENST00000557502		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000554998		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000402312		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000335290		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000542471		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000405309	ENST00000554175		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000405309	ENST00000557502		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000554998		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000402312		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000335290		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000542471		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000351933	ENST00000554175		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000351933	ENST00000557502		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000554998		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000402312		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000335290		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000542471		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000215919	ENST00000554175		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000215919	ENST00000557502		ChiTaRS3.1			BF939688	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
3UTR-3UTR	ENST00000608999	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000608999	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000608999	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000336894	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000336894	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000480184	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000480184	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000356764	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000356764	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000290419	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-3UTR	ENST00000290419	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000391959	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000391959	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000608999		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000336894		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000480184		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000356764		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-intron	ENST00000367270	ENST00000290419		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000391959		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
3UTR-3UTR	ENST00000367270	ENST00000367270		ChiTaRS3.1			BF822358	PPP1R12B	chr1	202553282	-	PPP1R12B	chr1	202553431	+
intron-intron	ENST00000360314	ENST00000330978		ChiTaRS3.1			BG991478	CASS4	chr20	55006663	+	BOLA2	chr16	30092692	+
intron-intron	ENST00000371336	ENST00000330978		ChiTaRS3.1			BG991478	CASS4	chr20	55006663	+	BOLA2	chr16	30092692	+
intron-intron	ENST00000434344	ENST00000330978		ChiTaRS3.1			BG991478	CASS4	chr20	55006663	+	BOLA2	chr16	30092692	+
intron-intron	ENST00000230859	ENST00000230859		ChiTaRS3.1			BF378768	PAPD7	chr5	6722385	+	PAPD7	chr5	6722825	-
intron-intron	ENST00000495645	ENST00000495645		ChiTaRS3.1			BQ309918	CHPF2	chr7	150934338	+	CHPF2	chr7	150933867	-
intron-intron	ENST00000495645	ENST00000035307		ChiTaRS3.1			BQ309918	CHPF2	chr7	150934338	+	CHPF2	chr7	150933867	-
intron-intron	ENST00000035307	ENST00000495645		ChiTaRS3.1			BQ309918	CHPF2	chr7	150934338	+	CHPF2	chr7	150933867	-
intron-intron	ENST00000035307	ENST00000035307		ChiTaRS3.1			BQ309918	CHPF2	chr7	150934338	+	CHPF2	chr7	150933867	-
intron-3UTR	ENST00000397293	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397293	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397293	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397293	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397293	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397293	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397293	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397293	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000397293	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000424878	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000424878	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000424878	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000424878	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000424878	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000424878	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000424878	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000424878	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000424878	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000349314	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000349314	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000349314	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000349314	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000349314	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000349314	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000349314	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000349314	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000349314	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000361710	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000361710	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000361710	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000361710	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000361710	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000361710	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000361710	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000361710	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000361710	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397287	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397287	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397287	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000397287	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397287	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397287	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397287	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000397287	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000397287	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000487423	ENST00000347401		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000487423	ENST00000353578		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000487423	ENST00000295550		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000487423	ENST00000472056		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000487423	ENST00000409809		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000487423	ENST00000346358		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000487423	ENST00000392004		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-intron	ENST00000487423	ENST00000392003		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-5UTR	ENST00000487423	ENST00000473258		ChiTaRS3.1			AW818488	APOL3	chr22	36537069	-	COL6A3	chr2	238232843	+
intron-3UTR	ENST00000359263	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000359263	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000359263	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000358334	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000358334	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000358334	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000371501	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371501	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371501	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000371502	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371502	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371502	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000371489	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371489	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371489	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000485212	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000485212	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000485212	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3UTR	ENST00000371488	ENST00000316623		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371488	ENST00000561429		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-intron	ENST00000371488	ENST00000560355		ChiTaRS3.1			BG007318	MYOF	chr10	95105726	-	FBN1	chr15	48703034	-
intron-3CDS	ENST00000540480	ENST00000246802		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000540480	ENST00000598681		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000537664	ENST00000246802		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000537664	ENST00000598681		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000476287	ENST00000246802		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000476287	ENST00000598681		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000252510	ENST00000246802		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000252510	ENST00000598681		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000496635	ENST00000246802		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-3CDS	ENST00000496635	ENST00000598681		ChiTaRS3.1			BC021558	FAM120B	chr6	170669225	-	GLTSCR2	chr19	48248827	+
intron-intron	ENST00000380542	ENST00000380542		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000380542	ENST00000469089		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000380542	ENST00000526115		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000469089	ENST00000380542		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000469089	ENST00000469089		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000469089	ENST00000526115		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000526115	ENST00000380542		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000526115	ENST00000469089		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000526115	ENST00000526115		ChiTaRS3.1			AW835788	NAP1L4	chr11	3003681	+	NAP1L4	chr11	3003239	-
intron-intron	ENST00000422256	ENST00000422256		ChiTaRS3.1			BI020668	PPP2R2D	chr10	133764031	+	PPP2R2D	chr10	133763030	+
intron-intron	ENST00000422256	ENST00000470416		ChiTaRS3.1			BI020668	PPP2R2D	chr10	133764031	+	PPP2R2D	chr10	133763030	+
intron-intron	ENST00000470416	ENST00000422256		ChiTaRS3.1			BI020668	PPP2R2D	chr10	133764031	+	PPP2R2D	chr10	133763030	+
intron-intron	ENST00000470416	ENST00000470416		ChiTaRS3.1			BI020668	PPP2R2D	chr10	133764031	+	PPP2R2D	chr10	133763030	+
intron-3CDS	ENST00000240922	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000240922	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000477813	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000477813	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000497525	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000497525	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000497255	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000497255	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000493454	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000493454	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000493900	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000493900	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3CDS	ENST00000467022	ENST00000374550		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
intron-3UTR	ENST00000467022	ENST00000482370		ChiTaRS3.1			BU598868	NAA50	chr3	113442278	-	RPL11	chr1	24022297	+
5CDS-5UTR	ENST00000427191	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000427191	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000427191	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000427191	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000427191	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000427191	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000436978	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000502971	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000411767	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000316707	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000427191		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000436978		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000502971		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000411767		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000316707		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
5CDS-5UTR	ENST00000511467	ENST00000511467		ChiTaRS3.1			U12128	PTPN13	chr4	87610347	+	PTPN13	chr4	87556404	+
intron-intron	ENST00000265361	ENST00000455511		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000265361	ENST00000481473		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000265361	ENST00000450008		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000544525	ENST00000455511		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000544525	ENST00000481473		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000544525	ENST00000450008		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000419255	ENST00000455511		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000419255	ENST00000481473		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000419255	ENST00000450008		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000536800	ENST00000455511		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000536800	ENST00000481473		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000536800	ENST00000450008		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000487621	ENST00000455511		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000487621	ENST00000481473		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000487621	ENST00000450008		ChiTaRS3.1			AW993838	SEMA3C	chr7	80423008	-	ANAPC7	chr12	110824133	+
intron-intron	ENST00000374825	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374825	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374825	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374825	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374825	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000496118	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000496118	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000496118	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000496118	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000580234	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000580234	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000580234	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000580234	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374831	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374831	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000374831	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000374831	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395289	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395289	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395289	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395289	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000443797	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000443797	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000443797	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000443797	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395287	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395287	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000395287	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000395287	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449085	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449085	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449085	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449085	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000438194	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000438194	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000438194	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000438194	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466744	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466744	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466744	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466744	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000383108	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000383108	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000383108	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000383108	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547895	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547895	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547895	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547895	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549843	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549843	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549843	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549843	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442863	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442863	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442863	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442863	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000552513	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000552513	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000552513	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000552513	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442219	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442219	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000442219	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000442219	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000498329	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000498329	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000498329	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000498329	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000488549	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000488549	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000488549	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000488549	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000425201	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000425201	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000425201	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000425201	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399529	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399529	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399529	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399529	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399528	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399528	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399528	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399528	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550142	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550142	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550142	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550142	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000548837	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000548837	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000548837	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000548837	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399527	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399527	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000399527	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000399527	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549236	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549236	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000549236	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000549236	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000482105	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000482105	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000482105	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000482105	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000414731	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000414731	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000414731	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000414731	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449118	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449118	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000449118	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000449118	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550598	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550598	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000550598	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000550598	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000479973	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000479973	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000479973	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000479973	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000546777	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000546777	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000546777	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000546777	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000450320	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000450320	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000450320	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000450320	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547286	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547286	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000547286	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000547286	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000552587	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000552587	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000552587	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000552587	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000549126	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000549126	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000549126	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000549126	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-5UTR	ENST00000553146	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-5UTR	ENST00000553146	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-5UTR	ENST00000553146	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5UTR-intron	ENST00000553146	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000448067	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000448067	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-5UTR	ENST00000448067	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
5CDS-intron	ENST00000448067	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000436979	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000436979	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000436979	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000436979	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000374825		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000496118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000580234		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000374831		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000395289		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000443797		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000395287		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000449085		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000438194		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000466744		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000383108		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000547895		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000549843		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000442863		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000552513		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000442219		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000498329		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000488549		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000425201		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000399529		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000399528		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000550142		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000548837		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000399527		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000549236		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000482105		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000414731		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000449118		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000550598		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000479973		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000546777		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000450320		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000547286		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466208	ENST00000552587		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466208	ENST00000549126		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-5UTR	ENST00000466208	ENST00000553146		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000448067		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000436979		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000466208	ENST00000466208		ChiTaRS3.1			BQ300318	BRD2	chr6	4421450	-	BRD2	chr6	4420768	+
intron-intron	ENST00000368868	ENST00000310441		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000369984		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000354233		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000461098		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000310441		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000369984		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000354233		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000461098		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000310441		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000369984		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000354233		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000461098		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000310441		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000369984		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000354233		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000461098		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000310441		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000369984		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000354233		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000461098		ChiTaRS3.1			BE646218	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000251775	ENST00000251775		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000251775	ENST00000536067		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000251775	ENST00000473417		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000536067	ENST00000251775		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000536067	ENST00000536067		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000536067	ENST00000473417		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000473417	ENST00000251775		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000473417	ENST00000536067		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000473417	ENST00000473417		ChiTaRS3.1			DW428338	SNX4	chr3	125191566	-	SNX4	chr3	125193516	-
intron-intron	ENST00000505330	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000505330	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000505330	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000505330	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000505330	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504381	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504381	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504381	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504381	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504381	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000507488	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000507488	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000507488	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000507488	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000507488	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000393221	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000393221	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000393221	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000393221	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000393221	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000533801	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000533801	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000533801	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000533801	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000533801	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000510168	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000510168	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000510168	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000510168	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000510168	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000508532	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000508532	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000508532	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000508532	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000508532	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504948	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504948	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504948	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504948	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000504948	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000513801	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000513801	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000513801	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000513801	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000513801	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000328560	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000328560	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000328560	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000328560	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000328560	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000428331	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000428331	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000428331	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000428331	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000428331	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000359644	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000359644	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000359644	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000359644	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000359644	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000422190	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000422190	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000422190	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000422190	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000422190	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000509150	ENST00000334956		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000509150	ENST00000539723		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000509150	ENST00000550549		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000509150	ENST00000538608		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-intron	ENST00000509150	ENST00000526746		ChiTaRS3.1			BF884558	ATP2C1	chr3	130653242	-	PARVA	chr11	12496506	+
intron-3CDS	ENST00000333167	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000333167	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000333167	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000333167	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000333167	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000333167	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000301810	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000301810	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000301810	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000301810	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000301810	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000301810	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000480865	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000480865	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000480865	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000480865	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000480865	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000480865	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000450296	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000450296	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000450296	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000450296	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000450296	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000450296	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000544624	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000544624	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000544624	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000544624	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000544624	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000544624	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000444607	ENST00000333167		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000444607	ENST00000301810		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000444607	ENST00000480865		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000444607	ENST00000450296		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-5UTR	ENST00000444607	ENST00000544624		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3UTR	ENST00000444607	ENST00000444607		ChiTaRS3.1			BF859008	ACAA1	chr3	38168146	-	ACAA1	chr3	38168057	+
intron-3CDS	ENST00000396821	ENST00000396821		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000396821	ENST00000444597		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000396821	ENST00000381633		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-5UTR	ENST00000396821	ENST00000432525		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-3CDS	ENST00000444597	ENST00000396821		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000444597	ENST00000444597		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000444597	ENST00000381633		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-5UTR	ENST00000444597	ENST00000432525		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-3CDS	ENST00000381633	ENST00000396821		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000381633	ENST00000444597		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000381633	ENST00000381633		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-5UTR	ENST00000381633	ENST00000432525		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-3CDS	ENST00000432525	ENST00000396821		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000432525	ENST00000444597		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-intron	ENST00000432525	ENST00000381633		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-5UTR	ENST00000432525	ENST00000432525		ChiTaRS3.1			AW340518	DDX17	chr22	38880143	-	DDX17	chr22	38891942	-
intron-5UTR	ENST00000476886	ENST00000273083		ChiTaRS3.1			DA718478	CLRN1-AS1	chr3	150772319	+	GRIP2	chr3	14548494	-
intron-5UTR	ENST00000465576	ENST00000273083		ChiTaRS3.1			DA718478	CLRN1-AS1	chr3	150772319	+	GRIP2	chr3	14548494	-
intron-intron	ENST00000426216	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000426216	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000426216	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000426216	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000426216	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000426216	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000307671	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000586722	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000591464	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000458297	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000426216		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000307671		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000586722		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000591464		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000458297		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
intron-intron	ENST00000543761	ENST00000543761		ChiTaRS3.1			BQ373598	ATP9B	chr18	77121955	-	ATP9B	chr18	77121902	+
3UTR-intron	ENST00000298249	ENST00000233146		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000298249	ENST00000543555		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000298249	ENST00000406134		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000298249	ENST00000461394		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000373758	ENST00000233146		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000373758	ENST00000543555		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000373758	ENST00000406134		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
3UTR-intron	ENST00000373758	ENST00000461394		ChiTaRS3.1			BE501128	REEP3	chr10	65383530	-	MSH2	chr2	47801033	-
intron-3UTR	ENST00000366844	ENST00000366844		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366844	ENST00000366843		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366844	ENST00000284563		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366844	ENST00000391874		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-3UTR	ENST00000366843	ENST00000366844		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366843	ENST00000366843		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366843	ENST00000284563		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000366843	ENST00000391874		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-3UTR	ENST00000284563	ENST00000366844		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000284563	ENST00000366843		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000284563	ENST00000284563		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000284563	ENST00000391874		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-3UTR	ENST00000391874	ENST00000366844		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000391874	ENST00000366843		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000391874	ENST00000284563		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000391874	ENST00000391874		ChiTaRS3.1			BM800638	ENAH	chr1	225683723	+	ENAH	chr1	225684413	-
intron-intron	ENST00000500538	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000500538	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000500538	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000500538	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000500538	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000499180	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000499180	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000499180	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000499180	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000499180	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000511571	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000511571	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000511571	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000511571	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000511571	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000498917	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000498917	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000498917	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000498917	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000498917	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000506606	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000506606	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000506606	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000506606	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000506606	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000514109	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000514109	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000514109	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000514109	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000514109	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000502758	ENST00000425241		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000502758	ENST00000323373		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000502758	ENST00000393102		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000502758	ENST00000406272		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-intron	ENST00000502758	ENST00000478572		ChiTaRS3.1			AW892618	UBA6-AS1	chr4	68917871	+	NR2C2	chr3	15088578	-
intron-3CDS	ENST00000278193	ENST00000367064		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000278193	ENST00000367063		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000278193	ENST00000391921		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000367067		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000314754		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000391920		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000367062		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000367065		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000278193	ENST00000465534		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000524596	ENST00000367064		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000524596	ENST00000367063		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000524596	ENST00000391921		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000367067		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000314754		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000391920		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000367062		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000367065		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3UTR	ENST00000524596	ENST00000465534		ChiTaRS3.1			DW408228	LIN7C	chr11	27523402	-	CD55	chr1	207510125	+
intron-3CDS	ENST00000215793	ENST00000215793		ChiTaRS3.1			BF893728	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-intron	ENST00000215793	ENST00000439242		ChiTaRS3.1			BF893728	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-3CDS	ENST00000439242	ENST00000215793		ChiTaRS3.1			BF893728	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-intron	ENST00000439242	ENST00000439242		ChiTaRS3.1			BF893728	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-3UTR	ENST00000538941	ENST00000538941		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000538941	ENST00000563290		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000538941	ENST00000324767		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-intron	ENST00000538941	ENST00000562890		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000563290	ENST00000538941		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000563290	ENST00000563290		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000563290	ENST00000324767		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-intron	ENST00000563290	ENST00000562890		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000324767	ENST00000538941		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000324767	ENST00000563290		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000324767	ENST00000324767		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-intron	ENST00000324767	ENST00000562890		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000562890	ENST00000538941		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000562890	ENST00000563290		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-3UTR	ENST00000562890	ENST00000324767		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
intron-intron	ENST00000562890	ENST00000562890		ChiTaRS3.1			AA528738	SCAPER	chr15	76640587	-	SCAPER	chr15	76640641	+
5CDS-5UTR	ENST00000398022	ENST00000372970		ChiTaRS3.1			BC018328	TM9SF4	chr20	30749144	-	OSER1	chr20	42835634	-
5CDS-5UTR	ENST00000398022	ENST00000255174		ChiTaRS3.1			BC018328	TM9SF4	chr20	30749144	-	OSER1	chr20	42835634	-
5CDS-5UTR	ENST00000217315	ENST00000372970		ChiTaRS3.1			BC018328	TM9SF4	chr20	30749144	-	OSER1	chr20	42835634	-
5CDS-5UTR	ENST00000217315	ENST00000255174		ChiTaRS3.1			BC018328	TM9SF4	chr20	30749144	-	OSER1	chr20	42835634	-
intron-3UTR	ENST00000372583	ENST00000372583		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000372583	ENST00000372584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372583	ENST00000247584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372583	ENST00000429157		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372583	ENST00000460604		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000372584	ENST00000372583		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000372584	ENST00000372584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372584	ENST00000247584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372584	ENST00000429157		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000372584	ENST00000460604		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000247584	ENST00000372583		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000247584	ENST00000372584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000247584	ENST00000247584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000247584	ENST00000429157		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000247584	ENST00000460604		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000429157	ENST00000372583		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000429157	ENST00000372584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000429157	ENST00000247584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000429157	ENST00000429157		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000429157	ENST00000460604		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000460604	ENST00000372583		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-3UTR	ENST00000460604	ENST00000372584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000460604	ENST00000247584		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000460604	ENST00000429157		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000460604	ENST00000460604		ChiTaRS3.1			AI813558	HIVEP3	chr1	41972877	+	HIVEP3	chr1	41973156	-
intron-intron	ENST00000380358	ENST00000540628		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000380358	ENST00000360429		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000380358	ENST00000568954		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000380358	ENST00000393524		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000380358	ENST00000356272		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000380358	ENST00000567016		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000540628		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000360429		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000568954		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000393524		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000356272		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000358181	ENST00000567016		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000540628		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000360429		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000568954		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000393524		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000356272		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000330494	ENST00000567016		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000540628		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000360429		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000568954		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000393524		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000356272		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000570758	ENST00000567016		ChiTaRS3.1			BF798228	CHD3	chr17	7813235	+	PHLPP2	chr16	71748414	+
intron-intron	ENST00000254799	ENST00000304636		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000254799	ENST00000317840		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000439371	ENST00000304636		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000439371	ENST00000317840		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000502323	ENST00000304636		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000502323	ENST00000317840		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000545193	ENST00000304636		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000545193	ENST00000317840		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000508091	ENST00000304636		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-intron	ENST00000508091	ENST00000317840		ChiTaRS3.1			AW081998	GRSF1	chr4	71686580	+	COL3A1	chr2	189857667	-
intron-3UTR	ENST00000530927	ENST00000334956		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000530927	ENST00000539723		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3UTR	ENST00000530927	ENST00000550549		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000530927	ENST00000538608		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000530927	ENST00000526746		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3UTR	ENST00000380815	ENST00000334956		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000380815	ENST00000539723		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3UTR	ENST00000380815	ENST00000550549		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000380815	ENST00000538608		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000380815	ENST00000526746		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3UTR	ENST00000467288	ENST00000334956		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000467288	ENST00000539723		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3UTR	ENST00000467288	ENST00000550549		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000467288	ENST00000538608		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-intron	ENST00000467288	ENST00000526746		ChiTaRS3.1			BQ897638	GMDS	chr6	1905260	+	PARVA	chr11	12550905	+
intron-3CDS	ENST00000264071	ENST00000354452		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000356073		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000568673		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000457482		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000543082		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000540999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000537578		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000564999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000568740		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000537856		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000544241		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000561992		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000561831		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000565018		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000570287		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000564228		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000567880		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000566286		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000566279		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000564403		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000398339		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000264071	ENST00000570177		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000264071	ENST00000563760		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000354452		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000356073		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000568673		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000457482		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000543082		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000540999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000537578		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000564999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000568740		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000537856		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000544241		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000561992		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000561831		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000565018		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000570287		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000564228		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000567880		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000566286		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000566279		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000564403		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000398339		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000540257	ENST00000570177		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000540257	ENST00000563760		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000354452		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000356073		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000568673		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000457482		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000543082		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000540999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000537578		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000564999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000568740		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000537856		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000544241		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000561992		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000561831		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000565018		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000570287		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000564228		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000567880		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000566286		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000566279		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000564403		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000398339		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000601152	ENST00000570177		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000601152	ENST00000563760		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000354452		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000356073		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000568673		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000457482		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000543082		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000540999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000537578		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000564999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000568740		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000537856		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000544241		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000561992		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000561831		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000565018		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000570287		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000564228		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000567880		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000566286		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000566279		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000564403		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000398339		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000598006	ENST00000570177		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000598006	ENST00000563760		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000354452		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000356073		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000568673		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000457482		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000543082		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000540999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000537578		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000564999		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000568740		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000537856		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000544241		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000561992		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000561831		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000565018		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000570287		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000564228		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000567880		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000566286		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000566279		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000564403		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000398339		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-3CDS	ENST00000596926	ENST00000570177		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000596926	ENST00000563760		ChiTaRS3.1			T06068	TUBB4A	chr19	6494383	+	TCF4	chr18	52896288	+
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BQ183998	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-3UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
intron-3UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			BF996378	TIMP2	chr17	76850629	-	TIMP2	chr17	76850730	+
3UTR-3UTR	ENST00000360943	ENST00000360943		ChiTaRS3.1			H91118	UBE2Z	chr17	47005646	-	UBE2Z	chr17	47005705	+
5CDS-5UTR	ENST00000369812	ENST00000369836		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369812	ENST00000336075		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369812	ENST00000326729		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-3UTR	ENST00000369812	ENST00000495742		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369812	ENST00000369833		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000256593	ENST00000369836		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000256593	ENST00000336075		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000256593	ENST00000326729		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-3UTR	ENST00000256593	ENST00000495742		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000256593	ENST00000369833		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369813	ENST00000369836		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369813	ENST00000336075		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369813	ENST00000326729		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-3UTR	ENST00000369813	ENST00000495742		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
5CDS-5UTR	ENST00000369813	ENST00000369833		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
3UTR-5UTR	ENST00000492718	ENST00000369836		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
3UTR-5UTR	ENST00000492718	ENST00000336075		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
3UTR-5UTR	ENST00000492718	ENST00000326729		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
3UTR-3UTR	ENST00000492718	ENST00000495742		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
3UTR-5UTR	ENST00000492718	ENST00000369833		ChiTaRS3.1			AV701798	GSTM5	chr1	110256332	+	GSTM4	chr1	110199002	+
intron-intron	ENST00000271640	ENST00000608469		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000271640	ENST00000367416		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000271640	ENST00000251424		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000271640	ENST00000367418		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368962	ENST00000608469		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368962	ENST00000367416		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368962	ENST00000251424		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368962	ENST00000367418		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368969	ENST00000608469		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368969	ENST00000367416		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368969	ENST00000251424		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368969	ENST00000367418		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368963	ENST00000608469		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368963	ENST00000367416		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368963	ENST00000251424		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000368963	ENST00000367418		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000459773	ENST00000608469		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000459773	ENST00000367416		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000459773	ENST00000251424		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000459773	ENST00000367418		ChiTaRS3.1			AV661668	SETDB1	chr1	150917334	-	CFHR4	chr1	196801204	+
intron-intron	ENST00000401558	ENST00000389327		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000401558	ENST00000389328		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000401558	ENST00000438773		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000401558	ENST00000522504		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000404992	ENST00000389327		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000404992	ENST00000389328		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000404992	ENST00000438773		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000404992	ENST00000522504		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000406957	ENST00000389327		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000406957	ENST00000389328		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000406957	ENST00000438773		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000406957	ENST00000522504		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000481214	ENST00000389327		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000481214	ENST00000389328		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000481214	ENST00000438773		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-intron	ENST00000481214	ENST00000522504		ChiTaRS3.1			N53198	XPO1	chr2	61715962	+	TRAPPC9	chr8	141227867	-
intron-3CDS	ENST00000561500	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000561500	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000561500	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000561500	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000561500	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000561500	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3CDS	ENST00000379047	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379047	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379047	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379047	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379047	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379047	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3CDS	ENST00000320623	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000320623	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000320623	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000320623	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000320623	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000320623	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3CDS	ENST00000379046	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379046	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379046	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379046	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379046	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000379046	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3CDS	ENST00000439109	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000439109	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000439109	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000439109	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000439109	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000439109	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3CDS	ENST00000564043	ENST00000561500		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000564043	ENST00000379047		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000564043	ENST00000320623		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000564043	ENST00000379046		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000564043	ENST00000439109		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-intron	ENST00000564043	ENST00000564043		ChiTaRS3.1			CB159668	NQO1	chr16	69748955	+	NQO1	chr16	69747000	-
intron-3UTR	ENST00000216121	ENST00000216121		ChiTaRS3.1			BQ331438	NIPSNAP1	chr22	29951289	+	NIPSNAP1	chr22	29951098	-
intron-intron	ENST00000216121	ENST00000494966		ChiTaRS3.1			BQ331438	NIPSNAP1	chr22	29951289	+	NIPSNAP1	chr22	29951098	-
intron-3UTR	ENST00000494966	ENST00000216121		ChiTaRS3.1			BQ331438	NIPSNAP1	chr22	29951289	+	NIPSNAP1	chr22	29951098	-
intron-intron	ENST00000494966	ENST00000494966		ChiTaRS3.1			BQ331438	NIPSNAP1	chr22	29951289	+	NIPSNAP1	chr22	29951098	-
5CDS-intron	ENST00000381227	ENST00000258729		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000381227	ENST00000491719		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000431623	ENST00000258729		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000431623	ENST00000491719		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000441246	ENST00000258729		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000441246	ENST00000491719		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000314595	ENST00000258729		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
5CDS-intron	ENST00000314595	ENST00000491719		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
intron-intron	ENST00000510355	ENST00000258729		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
intron-intron	ENST00000510355	ENST00000491719		ChiTaRS3.1			W81478	POLR2B	chr4	57897082	+	IGF2BP3	chr7	23419096	+
intron-intron	ENST00000329517	ENST00000329517		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000329517	ENST00000403325		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000329517	ENST00000405009		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000329517	ENST00000460402		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000403325	ENST00000329517		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000403325	ENST00000403325		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000403325	ENST00000405009		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000403325	ENST00000460402		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000405009	ENST00000329517		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000405009	ENST00000403325		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000405009	ENST00000405009		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000405009	ENST00000460402		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000460402	ENST00000329517		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000460402	ENST00000403325		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000460402	ENST00000405009		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
intron-intron	ENST00000460402	ENST00000460402		ChiTaRS3.1			AA453228	GNB1L	chr22	19837624	-	GNB1L	chr22	19838229	-
3UTR-3CDS	ENST00000409018	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409018	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3CDS	ENST00000492815	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000492815	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3CDS	ENST00000409014	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409014	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3CDS	ENST00000409675	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409675	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3CDS	ENST00000409949	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000409949	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3CDS	ENST00000409242	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000409242	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3CDS	ENST00000312994	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000312994	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3CDS	ENST00000449989	ENST00000409018		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000492815		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000409014		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000409675		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000409949		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000409242		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000312994		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
3UTR-3UTR	ENST00000449989	ENST00000449989		ChiTaRS3.1			BE694428	EXD2	chr14	69708187	+	EXD2	chr14	69701675	+
intron-3UTR	ENST00000513040	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000513040	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000513040	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000513040	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000513040	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000513040	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000513040	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000513040	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000513040	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000285689	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000285689	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000285689	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000285689	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000285689	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000285689	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000285689	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000285689	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000285689	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000515200	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000515200	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000515200	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000515200	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000515200	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000515200	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000515200	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000515200	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000515200	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000544396	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000544396	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000544396	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000544396	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000544396	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000544396	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000544396	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000544396	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000544396	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000542322	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000542322	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000542322	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000542322	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-3UTR	ENST00000542322	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000542322	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000542322	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000542322	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
3UTR-intron	ENST00000542322	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000514932	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000514932	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000514932	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000514932	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000514932	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000514932	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000514932	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000514932	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000514932	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000543198	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000543198	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000543198	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000543198	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000543198	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000543198	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000543198	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000543198	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000543198	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000502348	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000502348	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000502348	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000502348	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000502348	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000502348	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000502348	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000502348	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000502348	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000511134	ENST00000513040		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000511134	ENST00000285689		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000511134	ENST00000515200		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000511134	ENST00000544396		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-3UTR	ENST00000511134	ENST00000542322		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000511134	ENST00000514932		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000511134	ENST00000543198		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000511134	ENST00000502348		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000511134	ENST00000511134		ChiTaRS3.1			CA312008	GRAMD3	chr5	125829472	-	GRAMD3	chr5	125828986	+
intron-intron	ENST00000282488	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282488	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000282486	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000355460	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000493459	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324210	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000498502	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000545754	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000357472	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000324196	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485910	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000463374	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000492948	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000485509	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000282488		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000282486		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000355460		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000493459		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000324210		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000498502		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000545754		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000357472		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000324196		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000485910		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000463374		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000492948		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000485509		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
intron-intron	ENST00000461436	ENST00000461436		ChiTaRS3.1			BG778978	MBNL1	chr3	152048684	+	MBNL1	chr3	152046217	+
3UTR-3UTR	ENST00000536656	ENST00000536656		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-3UTR	ENST00000536656	ENST00000377346		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000536656	ENST00000484851		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000536656	ENST00000361110		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000536656	ENST00000543390		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-3UTR	ENST00000377346	ENST00000536656		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-3UTR	ENST00000377346	ENST00000377346		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000377346	ENST00000484851		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000377346	ENST00000361110		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
3UTR-intron	ENST00000377346	ENST00000543390		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000484851	ENST00000536656		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000484851	ENST00000377346		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000484851	ENST00000484851		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000484851	ENST00000361110		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000484851	ENST00000543390		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000361110	ENST00000536656		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000361110	ENST00000377346		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000361110	ENST00000484851		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000361110	ENST00000361110		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000361110	ENST00000543390		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000543390	ENST00000536656		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-3UTR	ENST00000543390	ENST00000377346		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000543390	ENST00000484851		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000543390	ENST00000361110		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-intron	ENST00000543390	ENST00000543390		ChiTaRS3.1			AV739808	PIK3CD	chr1	9788663	+	PIK3CD	chr1	9788156	+
intron-5UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			BU190748	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000504123	ENST00000336199		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000504123	ENST00000366540		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000504123	ENST00000366539		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000504123	ENST00000263826		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000504123	ENST00000492957		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000264903	ENST00000336199		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000264903	ENST00000366540		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000264903	ENST00000366539		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000264903	ENST00000263826		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000264903	ENST00000492957		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000506166	ENST00000336199		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000506166	ENST00000366540		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000506166	ENST00000366539		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000506166	ENST00000263826		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000506166	ENST00000492957		ChiTaRS3.1			AA479228	CNOT6L	chr4	78636227	-	AKT3	chr1	244013430	-
intron-intron	ENST00000327040	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000327040	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000327040	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000327040	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000327040	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000440756	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000440756	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000440756	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000440756	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000440756	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000286485	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000286485	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000286485	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000286485	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000286485	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000428502	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000428502	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000428502	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000428502	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000428502	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000523619	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000523619	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000523619	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000523619	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000523619	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000520789	ENST00000318217		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000520789	ENST00000394649		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000520789	ENST00000579584		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000520789	ENST00000584232		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000520789	ENST00000583621		ChiTaRS3.1			AK057818	PSD3	chr8	18743734	+	MYO1D	chr17	30832662	-
intron-intron	ENST00000396324	ENST00000262646		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000396324	ENST00000531289		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000396324	ENST00000529579		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000396324	ENST00000530071		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000452625	ENST00000262646		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000452625	ENST00000531289		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000452625	ENST00000529579		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000452625	ENST00000530071		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000576790	ENST00000262646		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000576790	ENST00000531289		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000576790	ENST00000529579		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000576790	ENST00000530071		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000300036	ENST00000262646		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000300036	ENST00000531289		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000300036	ENST00000529579		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000300036	ENST00000530071		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000573908	ENST00000262646		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000573908	ENST00000531289		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000573908	ENST00000529579		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000573908	ENST00000530071		ChiTaRS3.1			AW377018	MYH11	chr16	15835653	-	RAB2A	chr8	61518931	-
intron-intron	ENST00000505350	ENST00000505350		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000505350	ENST00000457016		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000505350	ENST00000257430		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000505350	ENST00000508376		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000457016	ENST00000505350		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000457016	ENST00000457016		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000457016	ENST00000257430		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000457016	ENST00000508376		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000257430	ENST00000505350		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000257430	ENST00000457016		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000257430	ENST00000257430		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000257430	ENST00000508376		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000508376	ENST00000505350		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000508376	ENST00000457016		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000508376	ENST00000257430		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000508376	ENST00000508376		ChiTaRS3.1			BF903928	APC	chr5	112067951	-	APC	chr5	112067580	+
intron-intron	ENST00000396353	ENST00000261965		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396353	ENST00000375669		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396353	ENST00000462580		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000261965		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000375669		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000462580		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000261965		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000375669		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000462580		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000261965		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000375669		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000462580		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000261965		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000375669		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000462580		ChiTaRS3.1			AW366688	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000394855	ENST00000394855		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394855	ENST00000489435		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394855	ENST00000343789		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394855	ENST00000394852		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394855	ENST00000446172		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000489435	ENST00000394855		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000489435	ENST00000489435		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000489435	ENST00000343789		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000489435	ENST00000394852		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000489435	ENST00000446172		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000343789	ENST00000394855		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000343789	ENST00000489435		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000343789	ENST00000343789		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000343789	ENST00000394852		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000343789	ENST00000446172		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394852	ENST00000394855		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394852	ENST00000489435		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394852	ENST00000343789		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394852	ENST00000394852		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000394852	ENST00000446172		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000446172	ENST00000394855		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000446172	ENST00000489435		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000446172	ENST00000343789		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000446172	ENST00000394852		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000446172	ENST00000446172		ChiTaRS3.1			CB851178	DNAJA4	chr15	78571525	-	DNAJA4	chr15	78571549	+
intron-intron	ENST00000373020	ENST00000546136		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000381381		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000309359		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000451604		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000537393		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000541536		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000396007		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000545921		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000541847		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000441133		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000373020	ENST00000536850		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000546136		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000381381		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000309359		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000451604		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000537393		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000541536		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000396007		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000545921		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000541847		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000441133		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000496771	ENST00000536850		ChiTaRS3.1			H10368	TSPAN6	chrX	99884162	+	SOX5	chr12	23881702	-
intron-intron	ENST00000263036	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000263036	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000263036	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000263036	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000263036	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000263036	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000263036	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000378764	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000378764	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000378764	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000378764	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000378764	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000378764	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000378764	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000482140	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000482140	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000482140	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000482140	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000482140	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000482140	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-3UTR	ENST00000482140	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378757	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378757	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378757	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378757	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378757	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378757	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378757	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378752	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378752	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378752	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378752	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378752	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378752	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378752	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378748	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378748	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378748	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378748	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378748	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378748	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378748	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378747	ENST00000263036		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378747	ENST00000378764		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-intron	ENST00000378747	ENST00000482140		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378747	ENST00000378757		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378747	ENST00000378752		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378747	ENST00000378748		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
3UTR-3UTR	ENST00000378747	ENST00000378747		ChiTaRS3.1			CB242718	OPTN	chr10	13179836	-	OPTN	chr10	13179766	+
intron-intron	ENST00000542955	ENST00000542955		ChiTaRS3.1			AI750908	IGFBP4	chr17	38613586	+	IGFBP4	chr17	38613459	-
intron-3UTR	ENST00000542955	ENST00000269593		ChiTaRS3.1			AI750908	IGFBP4	chr17	38613586	+	IGFBP4	chr17	38613459	-
3UTR-intron	ENST00000269593	ENST00000542955		ChiTaRS3.1			AI750908	IGFBP4	chr17	38613586	+	IGFBP4	chr17	38613459	-
3UTR-3UTR	ENST00000269593	ENST00000269593		ChiTaRS3.1			AI750908	IGFBP4	chr17	38613586	+	IGFBP4	chr17	38613459	-
intron-intron	ENST00000304621	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000304621	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000304621	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000304621	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000304621	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000317571	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000317571	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000317571	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000317571	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000317571	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000578150	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000578150	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000578150	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000578150	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000578150	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000584250	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000584250	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000584250	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000584250	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000584250	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000577185	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000577185	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000577185	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000577185	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
intron-intron	ENST00000577185	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
3UTR-intron	ENST00000540918	ENST00000301923		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
3UTR-intron	ENST00000540918	ENST00000402203		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
3UTR-intron	ENST00000540918	ENST00000454349		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
3UTR-intron	ENST00000540918	ENST00000335727		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
3UTR-intron	ENST00000540918	ENST00000497559		ChiTaRS3.1			AF363068	TTC39C	chr18	21715432	-	TNRC6B	chr22	40452819	-
5CDS-intron	ENST00000409155	ENST00000565858		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000409155	ENST00000473183		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000277315	ENST00000565858		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
5CDS-intron	ENST00000277315	ENST00000473183		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-intron	ENST00000482001	ENST00000565858		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-intron	ENST00000482001	ENST00000473183		ChiTaRS3.1			BE563268	ALAD	chr9	116155725	-	ESRP2	chr16	68266732	-
intron-intron	ENST00000409078	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000409078	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000409078	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541859	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000541377	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000455322	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000397587	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000263710	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000545861	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000231461		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000451528		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-intron	ENST00000430234	ENST00000507360		ChiTaRS3.1			DA572448	CLASP1	chr2	122228952	-	ST8SIA4	chr5	100207715	-
intron-3CDS	ENST00000454555	ENST00000450485		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-3CDS	ENST00000454555	ENST00000333479		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-intron	ENST00000454555	ENST00000545065		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-3UTR	ENST00000454555	ENST00000537348		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-5UTR	ENST00000454555	ENST00000436959		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-intron	ENST00000454555	ENST00000534995		ChiTaRS3.1			BE671738	LINC00343	chr13	106383937	-	KNTC1	chr12	123103055	-
intron-intron	ENST00000395631	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000395631	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000395631	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000395631	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000395631	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000395631	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000341590	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000343279	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000553373	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000399304	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000395631		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000341590		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000343279		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000553373		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000399304		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
intron-intron	ENST00000557255	ENST00000557255		ChiTaRS3.1			AA702988	FERMT2	chr14	53347335	-	FERMT2	chr14	53349694	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			BF062308	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BF062308	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BF062308	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BF062308	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-3CDS	ENST00000263377	ENST00000263377		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000263377	ENST00000371835		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000263377	ENST00000360016		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-5UTR	ENST00000263377	ENST00000602230		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000371835	ENST00000263377		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000371835	ENST00000371835		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000371835	ENST00000360016		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-5UTR	ENST00000371835	ENST00000602230		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000360016	ENST00000263377		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000360016	ENST00000371835		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000360016	ENST00000360016		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-5UTR	ENST00000360016	ENST00000602230		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000602230	ENST00000263377		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000602230	ENST00000371835		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3CDS	ENST00000602230	ENST00000360016		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-5UTR	ENST00000602230	ENST00000602230		ChiTaRS3.1			AV724498	BRD4	chr19	15361473	-	BRD4	chr19	15367878	-
intron-3UTR	ENST00000396593	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000396593	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000396593	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000311052	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000311052	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000311052	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000561530	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000561530	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000561530	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000567554	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000567554	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000567554	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000562843	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000562843	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000562843	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000567626	ENST00000294428		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-3UTR	ENST00000567626	ENST00000371072		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000567626	ENST00000430964		ChiTaRS3.1			H92728	CARHSP1	chr16	8948883	+	RAVER2	chr1	65298800	-
intron-intron	ENST00000446281	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000446281	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000452802	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000420095	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000441861	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000439407	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000455811	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000446281		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000452802		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000420095		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000441861		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000439407		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000455811		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
intron-intron	ENST00000458666	ENST00000458666		ChiTaRS3.1			AV732748	LMCD1-AS1	chr3	8326248	+	LMCD1-AS1	chr3	8316923	+
3UTR-3CDS	ENST00000355014	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000355014	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000355014	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000355014	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-intron	ENST00000355014	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3CDS	ENST00000368285	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368285	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368285	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368285	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-intron	ENST00000368285	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3CDS	ENST00000368284	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368284	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368284	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368284	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-intron	ENST00000368284	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3CDS	ENST00000368286	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368286	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368286	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368286	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-intron	ENST00000368286	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3CDS	ENST00000368282	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368282	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368282	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-3UTR	ENST00000368282	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
3UTR-intron	ENST00000368282	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
intron-3CDS	ENST00000487358	ENST00000493763		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
intron-3UTR	ENST00000487358	ENST00000397415		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
intron-3UTR	ENST00000487358	ENST00000304734		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
intron-3UTR	ENST00000487358	ENST00000424341		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
intron-intron	ENST00000487358	ENST00000602561		ChiTaRS3.1			AI350408	SEMA4A	chr1	156147291	-	RPL7L1	chr6	42854116	-
5CDS-3UTR	ENST00000326648	ENST00000326648		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
5CDS-intron	ENST00000326648	ENST00000416172		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
5CDS-intron	ENST00000326648	ENST00000559364		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-3UTR	ENST00000416172	ENST00000326648		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-intron	ENST00000416172	ENST00000416172		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-intron	ENST00000416172	ENST00000559364		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-3UTR	ENST00000559364	ENST00000326648		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-intron	ENST00000559364	ENST00000416172		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-intron	ENST00000559364	ENST00000559364		ChiTaRS3.1			AI936738	ZNF609	chr15	64967023	-	ZNF609	chr15	64975171	-
intron-intron	ENST00000455140	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000455140	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000455140	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000455140	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000248070	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000248070	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000248070	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000248070	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000535753	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000535753	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000535753	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000535753	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000594975	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000594975	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000594975	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000594975	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000602009	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000602009	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000602009	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000602009	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000597937	ENST00000497424		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000597937	ENST00000316562		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000597937	ENST00000610179		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
intron-intron	ENST00000597937	ENST00000464452		ChiTaRS3.1			BF354688	EPS15L1	chr19	16479592	+	PANK2	chr20	3903796	-
Frame-shit	ENST00000307365	ENST00000307365		ChiTaRS3.1			CB162888	DDIT4	chr10	74034469	-	DDIT4	chr10	74034744	+
Frame-shit	ENST00000277551	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000277551	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000277551	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000277551	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000277551	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371372	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371372	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000371372	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371372	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371372	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000277549	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000277549	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000277549	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000277549	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000277549	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371363	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371363	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000371363	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371363	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371363	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371355	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371355	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000371355	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371355	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371355	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371357	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
Frame-shit	ENST00000371357	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-intron	ENST00000371357	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371357	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
5CDS-5UTR	ENST00000371357	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000277550	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000277550	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-intron	ENST00000277550	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000277550	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000277550	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000371367	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000371367	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-intron	ENST00000371367	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000371367	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000371367	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000545473	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000545473	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-intron	ENST00000545473	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000545473	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000545473	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000371365	ENST00000356978		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3CDS	ENST00000371365	ENST00000447653		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-intron	ENST00000371365	ENST00000555132		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000371365	ENST00000553542		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-5UTR	ENST00000371365	ENST00000544280		ChiTaRS3.1			AA319858	CACNA1B	chr9	140952317	+	CALM1	chr14	90866408	+
intron-3UTR	ENST00000392650	ENST00000392650		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-3UTR	ENST00000392650	ENST00000388726		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-intron	ENST00000392650	ENST00000410094		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-3UTR	ENST00000388726	ENST00000392650		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-3UTR	ENST00000388726	ENST00000388726		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-intron	ENST00000388726	ENST00000410094		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-3UTR	ENST00000410094	ENST00000392650		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-3UTR	ENST00000410094	ENST00000388726		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
intron-intron	ENST00000410094	ENST00000410094		ChiTaRS3.1			BE298348	SDK2	chr17	71331722	-	SDK2	chr17	71331713	+
5CDS-intron	ENST00000232978	ENST00000405409		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000414461		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000449924		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000262829		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000397303		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000359369		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000416721		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
5CDS-intron	ENST00000232978	ENST00000438146		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000405409		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000414461		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000449924		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000262829		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000397303		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000359369		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000416721		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000460910	ENST00000438146		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000405409		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000414461		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000449924		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000262829		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000397303		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000359369		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000416721		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
intron-intron	ENST00000442970	ENST00000438146		ChiTaRS3.1			BG986278	NKTR	chr3	42678465	+	RBFOX2	chr22	36392705	+
3UTR-intron	ENST00000322764	ENST00000355451		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
3UTR-intron	ENST00000322764	ENST00000460110		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
3UTR-intron	ENST00000449423	ENST00000355451		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
3UTR-intron	ENST00000449423	ENST00000460110		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
3UTR-intron	ENST00000392910	ENST00000355451		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
3UTR-intron	ENST00000392910	ENST00000460110		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
intron-intron	ENST00000477373	ENST00000355451		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
intron-intron	ENST00000477373	ENST00000460110		ChiTaRS3.1			CA427508	ZYX	chr7	143088032	-	NUDCD3	chr7	44473732	+
intron-intron	ENST00000222345	ENST00000222345		ChiTaRS3.1			AA654988	SIPA1L3	chr19	38442088	+	SIPA1L3	chr19	38442017	-
intron-intron	ENST00000222345	ENST00000476317		ChiTaRS3.1			AA654988	SIPA1L3	chr19	38442088	+	SIPA1L3	chr19	38442017	-
intron-intron	ENST00000476317	ENST00000222345		ChiTaRS3.1			AA654988	SIPA1L3	chr19	38442088	+	SIPA1L3	chr19	38442017	-
intron-intron	ENST00000476317	ENST00000476317		ChiTaRS3.1			AA654988	SIPA1L3	chr19	38442088	+	SIPA1L3	chr19	38442017	-
intron-3UTR	ENST00000391854	ENST00000217958		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000391854	ENST00000372296		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000391854	ENST00000372295		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000391854	ENST00000361815		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000391854	ENST00000340200		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-3UTR	ENST00000450593	ENST00000217958		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000450593	ENST00000372296		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000450593	ENST00000372295		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000450593	ENST00000361815		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000450593	ENST00000340200		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-3UTR	ENST00000366598	ENST00000217958		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366598	ENST00000372296		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366598	ENST00000372295		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366598	ENST00000361815		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366598	ENST00000340200		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-3UTR	ENST00000366597	ENST00000217958		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366597	ENST00000372296		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366597	ENST00000372295		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366597	ENST00000361815		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000366597	ENST00000340200		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-3UTR	ENST00000484517	ENST00000217958		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000484517	ENST00000372296		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000484517	ENST00000372295		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000484517	ENST00000361815		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
intron-intron	ENST00000484517	ENST00000340200		ChiTaRS3.1			AA743558	GNG4	chr1	235801806	+	PSMD10	chrX	107327444	+
3UTR-3CDS	ENST00000429174	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000429174	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000429174	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000429174	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000429174	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000429174	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000429174	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409762	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000409762	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000413539	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000413539	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409582	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000409582	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000258104	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000258104	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410020	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000410020	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409744	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000409744	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409651	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000409651	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000410041	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000410041	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000409366	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000409366	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000394120	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000394120	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000591462		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000252455		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000412601		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000592741		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000587327		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-3CDS	ENST00000479049	ENST00000589838		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
3UTR-intron	ENST00000479049	ENST00000591510		ChiTaRS3.1			AA968638	DYSF	chr2	71913708	-	PRKCSH	chr19	11558280	-
intron-intron	ENST00000409900	ENST00000409900		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409900	ENST00000488080		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409900	ENST00000409156		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409900	ENST00000295497		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409900	ENST00000409597		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000488080	ENST00000409900		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000488080	ENST00000488080		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000488080	ENST00000409156		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000488080	ENST00000295497		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000488080	ENST00000409597		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409156	ENST00000409900		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409156	ENST00000488080		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409156	ENST00000409156		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409156	ENST00000295497		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409156	ENST00000409597		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000295497	ENST00000409900		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000295497	ENST00000488080		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000295497	ENST00000409156		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000295497	ENST00000295497		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000295497	ENST00000409597		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409597	ENST00000409900		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409597	ENST00000488080		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409597	ENST00000409156		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409597	ENST00000295497		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
intron-intron	ENST00000409597	ENST00000409597		ChiTaRS3.1			X51408	CHN1	chr2	175712348	+	CHN1	chr2	175711836	-
5UTR-3CDS	ENST00000603302	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000603302	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000603302	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000603302	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000603302	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-intron	ENST00000603302	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
In-frame	ENST00000403312	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
In-frame	ENST00000403312	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
In-frame	ENST00000403312	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
In-frame	ENST00000403312	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
In-frame	ENST00000403312	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5CDS-intron	ENST00000403312	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000309522	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000309522	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000309522	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000309522	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-3CDS	ENST00000309522	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
5UTR-intron	ENST00000309522	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000505878	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000505878	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000505878	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000505878	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000505878	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-intron	ENST00000505878	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000454409	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000454409	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000454409	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000454409	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000454409	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-intron	ENST00000454409	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000510728	ENST00000603302		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000510728	ENST00000403312		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000510728	ENST00000309522		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000510728	ENST00000505878		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-3CDS	ENST00000510728	ENST00000454409		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-intron	ENST00000510728	ENST00000510728		ChiTaRS3.1			CB164018	HADH	chr4	108911008	-	HADH	chr4	108935650	+
intron-intron	ENST00000592782	ENST00000592782		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000592782	ENST00000258960		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000592782	ENST00000590114		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000258960	ENST00000592782		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000258960	ENST00000258960		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000258960	ENST00000590114		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000590114	ENST00000592782		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000590114	ENST00000258960		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-intron	ENST00000590114	ENST00000590114		ChiTaRS3.1			Z19488	NMT1	chr17	43144525	+	NMT1	chr17	43145373	-
intron-3UTR	ENST00000311086	ENST00000311086		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000311086	ENST00000285908		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000311086	ENST00000480951		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000311086	ENST00000471339		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000285908	ENST00000311086		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000285908	ENST00000285908		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000285908	ENST00000480951		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000285908	ENST00000471339		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000480951	ENST00000311086		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000480951	ENST00000285908		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000480951	ENST00000480951		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000480951	ENST00000471339		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000471339	ENST00000311086		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-3UTR	ENST00000471339	ENST00000285908		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000471339	ENST00000480951		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000471339	ENST00000471339		ChiTaRS3.1			AI887548	BOD1	chr5	173034540	-	BOD1	chr5	173034583	+
intron-intron	ENST00000517441	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000517441	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000535084	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000307719	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000539092	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000541942	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000545197	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000518029	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000517492	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000517441		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000535084		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000307719		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000539092		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000541942		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000545197		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000518029		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000517492		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
3UTR-intron	ENST00000520546	ENST00000520546		ChiTaRS3.1			BE775188	NAT1	chr8	18080499	+	NAT1	chr8	18080406	-
intron-intron	ENST00000528498	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000528498	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000528498	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000528900	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000528900	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000528900	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000405097	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000405097	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000405097	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000530301	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000530301	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000530301	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000343115	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000343115	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000343115	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000544551	ENST00000398073		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000544551	ENST00000548823		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
intron-intron	ENST00000544551	ENST00000547701		ChiTaRS3.1			AA625758	RDX	chr5	148875942	+	CTDSP2	chr12	58236408	+
Frame-shit	ENST00000566780	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
Frame-shit	ENST00000566780	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
In-frame	ENST00000566780	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
Frame-shit	ENST00000566780	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000566780	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000566780	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000566780	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000566780	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000406884	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000406884	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000406884	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000406884	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000406884	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000406884	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000406884	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000406884	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000539474	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000539474	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000539474	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000539474	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000539474	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000539474	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000539474	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000539474	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000402655	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000402655	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000402655	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000402655	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000402655	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000402655	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000402655	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000402655	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
Frame-shit	ENST00000408984	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
Frame-shit	ENST00000408984	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
In-frame	ENST00000408984	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
Frame-shit	ENST00000408984	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000408984	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000408984	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000408984	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
5CDS-intron	ENST00000408984	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000355860	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000355860	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000355860	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000355860	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000355860	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000355860	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000355860	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000355860	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000565791	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000565791	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000565791	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000565791	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000565791	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000565791	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000565791	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000565791	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000569818	ENST00000566780		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000569818	ENST00000406884		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000569818	ENST00000539474		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-3CDS	ENST00000569818	ENST00000402655		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000569818	ENST00000408984		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000569818	ENST00000355860		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000569818	ENST00000565791		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000569818	ENST00000569818		ChiTaRS3.1			AY405915	WWOX	chr16	78466649	+	WWOX	chr16	79245500	+
intron-intron	ENST00000341500	ENST00000341500		ChiTaRS3.1			AI733108	INSR	chr19	7134768	-	INSR	chr19	7136874	-
intron-intron	ENST00000341500	ENST00000302850		ChiTaRS3.1			AI733108	INSR	chr19	7134768	-	INSR	chr19	7136874	-
intron-intron	ENST00000302850	ENST00000341500		ChiTaRS3.1			AI733108	INSR	chr19	7134768	-	INSR	chr19	7136874	-
intron-intron	ENST00000302850	ENST00000302850		ChiTaRS3.1			AI733108	INSR	chr19	7134768	-	INSR	chr19	7136874	-
intron-intron	ENST00000370355	ENST00000370355		ChiTaRS3.1			CB267198	SCD	chr10	102117281	+	SCD	chr10	102115942	+
intron-3CDS	ENST00000307790	ENST00000307790		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000307790	ENST00000397771		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000307790	ENST00000542393		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-intron	ENST00000307790	ENST00000478812		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000397771	ENST00000307790		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000397771	ENST00000397771		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000397771	ENST00000542393		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-intron	ENST00000397771	ENST00000478812		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000542393	ENST00000307790		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000542393	ENST00000397771		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000542393	ENST00000542393		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-intron	ENST00000542393	ENST00000478812		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000478812	ENST00000307790		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000478812	ENST00000397771		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000478812	ENST00000542393		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-intron	ENST00000478812	ENST00000478812		ChiTaRS3.1			BF899598	ASCC2	chr22	30198104	+	ASCC2	chr22	30198020	-
intron-3CDS	ENST00000322927	ENST00000338257		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-intron	ENST00000322927	ENST00000595046		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-3CDS	ENST00000426788	ENST00000338257		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-intron	ENST00000426788	ENST00000595046		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-3CDS	ENST00000494955	ENST00000338257		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-intron	ENST00000494955	ENST00000595046		ChiTaRS3.1			BE145498	ZNF335	chr20	44579145	+	MYO1F	chr19	8617005	-
intron-intron	ENST00000306320	ENST00000306320		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-5UTR	ENST00000306320	ENST00000399793		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-intron	ENST00000306320	ENST00000509048		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-intron	ENST00000399793	ENST00000306320		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-5UTR	ENST00000399793	ENST00000399793		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-intron	ENST00000399793	ENST00000509048		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-intron	ENST00000509048	ENST00000306320		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-5UTR	ENST00000509048	ENST00000399793		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-intron	ENST00000509048	ENST00000509048		ChiTaRS3.1			BP258358	FAM134B	chr5	16474168	-	FAM134B	chr5	16508937	-
intron-5UTR	ENST00000381125	ENST00000372862		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381125	ENST00000372858		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381125	ENST00000372857		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381125	ENST00000372856		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-intron	ENST00000381125	ENST00000529216		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381075	ENST00000372862		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381075	ENST00000372858		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381075	ENST00000372857		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381075	ENST00000372856		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-intron	ENST00000381075	ENST00000529216		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000421751	ENST00000372862		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000421751	ENST00000372858		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000421751	ENST00000372857		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000421751	ENST00000372856		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-intron	ENST00000421751	ENST00000529216		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381072	ENST00000372862		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381072	ENST00000372858		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381072	ENST00000372857		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-5UTR	ENST00000381072	ENST00000372856		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-intron	ENST00000381072	ENST00000529216		ChiTaRS3.1			U33818	PFKP	chr10	3170203	-	PABPC4	chr1	40041659	-
intron-3CDS	ENST00000252242	ENST00000252242		ChiTaRS3.1			BQ352598	KRT5	chr12	52911900	+	KRT5	chr12	52912834	-
intron-intron	ENST00000427836	ENST00000336095		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000427836	ENST00000358395		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000427836	ENST00000432261		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000427836	ENST00000545616		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000389247	ENST00000336095		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000389247	ENST00000358395		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000389247	ENST00000432261		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000389247	ENST00000545616		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000457206	ENST00000336095		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000457206	ENST00000358395		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000457206	ENST00000432261		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
intron-intron	ENST00000457206	ENST00000545616		ChiTaRS3.1			AK130218	PLEKHM3	chr2	208736670	-	RNF24	chr20	3941622	-
Frame-shit	ENST00000233557	ENST00000233557		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000233557	ENST00000379852		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000233557	ENST00000379863		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
In-frame	ENST00000379852	ENST00000233557		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000379852	ENST00000379852		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000379852	ENST00000379863		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
In-frame	ENST00000379863	ENST00000233557		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000379863	ENST00000379852		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
Frame-shit	ENST00000379863	ENST00000379863		ChiTaRS3.1			BU155778	NRBP1	chr2	27664650	+	NRBP1	chr2	27656162	+
intron-intron	ENST00000392225	ENST00000433082		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000600591		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000593620		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000601907		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000598105		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000601744		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000413560		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000608035		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000608936		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000609394		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000608328		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000609140		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000608138		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000608399		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000601335		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000601854		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000451396		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000610094		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000392225	ENST00000598091		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000433082		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000600591		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000593620		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000601907		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000598105		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000601744		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000413560		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000608035		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000608936		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000609394		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000608328		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000609140		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000608138		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000608399		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000601335		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000601854		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000451396		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000610094		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000310123	ENST00000598091		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000433082		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000600591		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000593620		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000601907		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000598105		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000601744		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000413560		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000608035		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000608936		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000609394		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000608328		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000609140		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000608138		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000608399		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000601335		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000601854		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000451396		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000610094		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000493050	ENST00000598091		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000433082		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000600591		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000593620		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000601907		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000598105		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000601744		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000413560		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000608035		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000608936		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000609394		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000608328		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000609140		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000608138		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000608399		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000601335		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000601854		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000451396		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000610094		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-intron	ENST00000591633	ENST00000598091		ChiTaRS3.1			BF918548	LGI4	chr19	35629762	-	PROX1-AS1	chr1	214034680	+
intron-5UTR	ENST00000348956	ENST00000348956		ChiTaRS3.1			AI203968	CKB	chr14	103988182	-	CKB	chr14	103988834	-
intron-3CDS	ENST00000306749	ENST00000440973		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000306749	ENST00000338799		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000456483		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000443427		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000206249		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000406599		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000427531		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3UTR	ENST00000306749	ENST00000482101		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000579758	ENST00000440973		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000579758	ENST00000338799		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000456483		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000443427		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000206249		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000406599		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000427531		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3UTR	ENST00000579758	ENST00000482101		ChiTaRS3.1			AF172068	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
3UTR-3UTR	ENST00000369799	ENST00000369799		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000369799	ENST00000475081		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000369799	ENST00000359172		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000369799	ENST00000393614		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-3UTR	ENST00000475081	ENST00000369799		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000475081	ENST00000475081		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000475081	ENST00000359172		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000475081	ENST00000393614		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-3UTR	ENST00000359172	ENST00000369799		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000359172	ENST00000475081		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000359172	ENST00000359172		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
3UTR-intron	ENST00000359172	ENST00000393614		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-3UTR	ENST00000393614	ENST00000369799		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000393614	ENST00000475081		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000393614	ENST00000359172		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000393614	ENST00000393614		ChiTaRS3.1			AI800578	AHCYL1	chr1	110564858	-	AHCYL1	chr1	110565987	-
intron-intron	ENST00000409170	ENST00000470610		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000409170	ENST00000389672		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000409170	ENST00000542517		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000409170	ENST00000514100		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000409170	ENST00000502694		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000409170	ENST00000442602		ChiTaRS3.1			BF036178	RPL36A-HNRNPH2	chrX	100656539	-	EPHA6	chr3	96639308	+
intron-intron	ENST00000418342	ENST00000328908		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000418342	ENST00000397588		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000418342	ENST00000472453		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000418342	ENST00000449732		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000418342	ENST00000343762		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000302291	ENST00000328908		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000302291	ENST00000397588		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000302291	ENST00000472453		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000302291	ENST00000449732		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000302291	ENST00000343762		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000314174	ENST00000328908		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000314174	ENST00000397588		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000314174	ENST00000472453		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000314174	ENST00000449732		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000314174	ENST00000343762		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000374623	ENST00000328908		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000374623	ENST00000397588		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000374623	ENST00000472453		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000374623	ENST00000449732		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
intron-intron	ENST00000374623	ENST00000343762		ChiTaRS3.1			BG005238	LUZP1	chr1	23418926	+	CDYL	chr6	4793795	-
In-frame	ENST00000324631	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000324631	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377328	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000352115	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000282343	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377331	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000396576	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377319	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377329	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377315	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000324932		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000359171		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000355260		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000397004		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000397007		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-intron	ENST00000467034	ENST00000488828		ChiTaRS3.1			BF921318	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-intron	ENST00000510767	ENST00000510767		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000512786		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000510066		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000512538		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000510767		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000512786		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000510066		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000512538		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000510767		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000512786		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000510066		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000512538		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000510767		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000512786		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000510066		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000512538		ChiTaRS3.1			BQ313688	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-3CDS	ENST00000418109	ENST00000418109		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-3CDS	ENST00000418109	ENST00000305544		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-intron	ENST00000418109	ENST00000464891		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-3CDS	ENST00000305544	ENST00000418109		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-3CDS	ENST00000305544	ENST00000305544		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-intron	ENST00000305544	ENST00000464891		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-3CDS	ENST00000464891	ENST00000418109		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-3CDS	ENST00000464891	ENST00000305544		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-intron	ENST00000464891	ENST00000464891		ChiTaRS3.1			AW996518	LAMB2	chr3	49158646	-	LAMB2	chr3	49159420	-
intron-intron	ENST00000423994	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000423994	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000423994	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000429770	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000429770	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000429770	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000435965	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000435965	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000435965	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000266039	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000266039	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000266039	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000395083	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000395083	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000395083	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000360963	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000360963	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000360963	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000424201	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000424201	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000424201	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000479441	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000479441	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000479441	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000487413	ENST00000217159		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000487413	ENST00000370507		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-intron	ENST00000487413	ENST00000470412		ChiTaRS3.1			BF085098	CACNA2D2	chr3	50404910	+	SLCO4A1	chr20	61282645	-
intron-3CDS	ENST00000481781	ENST00000394667		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000481781	ENST00000502534		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000481781	ENST00000394665		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000481781	ENST00000506397		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000481781	ENST00000394668		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000397270	ENST00000394667		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000397270	ENST00000502534		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000397270	ENST00000394665		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000397270	ENST00000506397		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-3CDS	ENST00000397270	ENST00000394668		ChiTaRS3.1			BF697308	INS-IGF2	chr11	2153279	-	RPL34	chr4	109546339	+
intron-intron	ENST00000538348	ENST00000252211		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000538348	ENST00000341464		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000538348	ENST00000377255		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000451195	ENST00000252211		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000451195	ENST00000341464		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000451195	ENST00000377255		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000304177	ENST00000252211		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000304177	ENST00000341464		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000304177	ENST00000377255		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000513601	ENST00000252211		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000513601	ENST00000341464		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000513601	ENST00000377255		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000565712	ENST00000252211		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000565712	ENST00000341464		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000565712	ENST00000377255		ChiTaRS3.1			BC019888	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM949721	KMT2A	chr11	118355096	+	MLLT1	chr19	6273879	-
intron-3CDS	ENST00000286301	ENST00000336898		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000286301	ENST00000376282		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000529095		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000526177		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000533784		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000529721		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000533805		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000286301	ENST00000443276		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000515239	ENST00000336898		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000515239	ENST00000376282		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000529095		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000526177		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000533784		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000529721		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000533805		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000515239	ENST00000443276		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000543093	ENST00000336898		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000543093	ENST00000376282		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000529095		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000526177		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000533784		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000529721		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000533805		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000543093	ENST00000443276		ChiTaRS3.1			BQ368248	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000470862	ENST00000377298		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000470862	ENST00000361311		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000470862	ENST00000377288		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-intron	ENST00000470862	ENST00000477264		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000605149	ENST00000377298		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000605149	ENST00000361311		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000605149	ENST00000377288		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-intron	ENST00000605149	ENST00000477264		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000439082	ENST00000377298		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000439082	ENST00000361311		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000439082	ENST00000377288		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-intron	ENST00000439082	ENST00000477264		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000380554	ENST00000377298		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000380554	ENST00000361311		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-3CDS	ENST00000380554	ENST00000377288		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
intron-intron	ENST00000380554	ENST00000477264		ChiTaRS3.1			BE720028	AKR1C3	chr10	5034107	+	CLSTN1	chr1	9811552	+
In-frame	ENST00000392708	ENST00000431726		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
In-frame	ENST00000392708	ENST00000265562		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
Frame-shit	ENST00000529196	ENST00000431726		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
Frame-shit	ENST00000529196	ENST00000265562		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
Frame-shit	ENST00000531491	ENST00000431726		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
Frame-shit	ENST00000531491	ENST00000265562		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
intron-3CDS	ENST00000526364	ENST00000431726		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
intron-3CDS	ENST00000526364	ENST00000265562		ChiTaRS3.1			BF803158	STT3A	chr11	125490703	+	PTPN23	chr3	47450292	+
intron-3CDS	ENST00000586746	ENST00000586746		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-3CDS	ENST00000586746	ENST00000215587		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-5UTR	ENST00000586746	ENST00000585838		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-3CDS	ENST00000215587	ENST00000586746		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-3CDS	ENST00000215587	ENST00000215587		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-5UTR	ENST00000215587	ENST00000585838		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-3CDS	ENST00000585838	ENST00000586746		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-3CDS	ENST00000585838	ENST00000215587		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-5UTR	ENST00000585838	ENST00000585838		ChiTaRS3.1			CB215068	POLR2E	chr19	1093926	+	POLR2E	chr19	1091875	-
intron-intron	ENST00000378455	ENST00000408890		ChiTaRS3.1			AK097768	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000342274	ENST00000408890		ChiTaRS3.1			AK097768	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000378463	ENST00000408890		ChiTaRS3.1			AK097768	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000397354	ENST00000408890		ChiTaRS3.1			AK097768	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000378444	ENST00000408890		ChiTaRS3.1			AK097768	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-3UTR	ENST00000307877	ENST00000307877		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000307877	ENST00000539137		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-intron	ENST00000307877	ENST00000355113		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000307877	ENST00000602720		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-5UTR	ENST00000307877	ENST00000542536		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000539137	ENST00000307877		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000539137	ENST00000539137		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-intron	ENST00000539137	ENST00000355113		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000539137	ENST00000602720		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-5UTR	ENST00000539137	ENST00000542536		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000355113	ENST00000307877		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000355113	ENST00000539137		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-intron	ENST00000355113	ENST00000355113		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000355113	ENST00000602720		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-5UTR	ENST00000355113	ENST00000542536		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000602720	ENST00000307877		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000602720	ENST00000539137		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-intron	ENST00000602720	ENST00000355113		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000602720	ENST00000602720		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-5UTR	ENST00000602720	ENST00000542536		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000542536	ENST00000307877		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000542536	ENST00000539137		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-intron	ENST00000542536	ENST00000355113		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000542536	ENST00000602720		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-5UTR	ENST00000542536	ENST00000542536		ChiTaRS3.1			BG119358	SRP68	chr17	74035648	+	SRP68	chr17	74035596	-
intron-3UTR	ENST00000570164	ENST00000318217		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000570164	ENST00000394649		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000570164	ENST00000579584		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000570164	ENST00000584232		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000570164	ENST00000583621		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000327237	ENST00000318217		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000327237	ENST00000394649		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000327237	ENST00000579584		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000327237	ENST00000584232		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000327237	ENST00000583621		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000567994	ENST00000318217		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000567994	ENST00000394649		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000567994	ENST00000579584		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000567994	ENST00000584232		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000567994	ENST00000583621		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000430477	ENST00000318217		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3UTR	ENST00000430477	ENST00000394649		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000430477	ENST00000579584		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000430477	ENST00000584232		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-intron	ENST00000430477	ENST00000583621		ChiTaRS3.1			BQ325478	C16orf58	chr16	31510800	+	MYO1D	chr17	30820314	-
intron-3CDS	ENST00000317506	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000317506	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000317506	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000448631	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000448631	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000448631	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000536251	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000536251	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000536251	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000411657	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000411657	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000411657	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602677	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602677	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602677	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000425512	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000425512	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000425512	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602887	ENST00000354297		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602887	ENST00000375413		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-3CDS	ENST00000602887	ENST00000375422		ChiTaRS3.1			BF155588	RANBP10	chr16	67830895	-	BPIFA1	chr20	31828044	+
intron-5UTR	ENST00000368732	ENST00000368732		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368732	ENST00000368733		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368732	ENST00000477801		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000368732		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000368733		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-5UTR	ENST00000368733	ENST00000477801		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000368732		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000368733		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
5CDS-5UTR	ENST00000477801	ENST00000477801		ChiTaRS3.1			CA944868	S100A8	chr1	153362682	+	S100A8	chr1	153363015	-
intron-3CDS	ENST00000456150	ENST00000392213		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3UTR	ENST00000456150	ENST00000361922		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000456150	ENST00000597035		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000456150	ENST00000537831		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000456150	ENST00000593348		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3CDS	ENST00000383738	ENST00000392213		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3UTR	ENST00000383738	ENST00000361922		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000383738	ENST00000597035		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000383738	ENST00000537831		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000383738	ENST00000593348		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3CDS	ENST00000264723	ENST00000392213		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3UTR	ENST00000264723	ENST00000361922		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000264723	ENST00000597035		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000264723	ENST00000537831		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000264723	ENST00000593348		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3CDS	ENST00000465441	ENST00000392213		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3UTR	ENST00000465441	ENST00000361922		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000465441	ENST00000597035		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000465441	ENST00000537831		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-intron	ENST00000465441	ENST00000593348		ChiTaRS3.1			BF364648	CSPG5	chr3	47614359	+	MAG	chr19	35804313	-
intron-3UTR	ENST00000545844	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000545844	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000545844	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000545844	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000545844	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000545844	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000545844	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000545844	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000567887	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000567887	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000567887	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000372915	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000372915	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000372915	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000361689	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000361689	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000361689	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000539005	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000539005	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000539005	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000317713	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000317713	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000317713	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000564288	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000564288	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000564288	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000289893	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000289893	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000289893	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000536367	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000536367	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000536367	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000484793	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000484793	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000484793	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000602421	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000602421	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000602421	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000409078		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000541859		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000541377		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000455322		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000397587		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-3UTR	ENST00000476350	ENST00000263710		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000476350	ENST00000545861		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000476350	ENST00000430234		ChiTaRS3.1			AJ708378	MACF1	chr1	39874969	+	CLASP1	chr2	122095928	-
intron-intron	ENST00000360416	ENST00000536122		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000268699		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000360416	ENST00000540721		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000536122		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000268699		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000379980	ENST00000540721		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000536122		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000268699		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000396239	ENST00000540721		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000536122		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000268699		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-intron	ENST00000269243	ENST00000540721		ChiTaRS3.1			CV360518	MYH10	chr17	8512432	-	GAS8	chr16	90096450	+
intron-3CDS	ENST00000369239	ENST00000369239		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-3CDS	ENST00000369239	ENST00000438806		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-intron	ENST00000369239	ENST00000466057		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-3CDS	ENST00000438806	ENST00000369239		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-3CDS	ENST00000438806	ENST00000438806		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-intron	ENST00000438806	ENST00000466057		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-3CDS	ENST00000466057	ENST00000369239		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-3CDS	ENST00000466057	ENST00000438806		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-intron	ENST00000466057	ENST00000466057		ChiTaRS3.1			AW384418	PNISR	chr6	99848672	+	PNISR	chr6	99848689	-
intron-intron	ENST00000414241	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3UTR	ENST00000414241	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000414241	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000414241	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000414241	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000414241	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-intron	ENST00000373493	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-3UTR	ENST00000373493	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-intron	ENST00000373493	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-intron	ENST00000373493	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-intron	ENST00000373493	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
3UTR-intron	ENST00000373493	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000524393	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3UTR	ENST00000524393	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000524393	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000524393	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000524393	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000524393	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000544435	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3UTR	ENST00000544435	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000544435	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000544435	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000544435	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000544435	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000373485	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3UTR	ENST00000373485	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000373485	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000373485	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000373485	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000373485	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000458695	ENST00000414241		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3UTR	ENST00000458695	ENST00000373493		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000458695	ENST00000524393		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000458695	ENST00000544435		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000458695	ENST00000373485		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-intron	ENST00000458695	ENST00000458695		ChiTaRS3.1			CB242058	RBBP4	chr1	33151500	-	RBBP4	chr1	33151422	+
intron-3CDS	ENST00000500597	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000500597	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000500597	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000407977	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000407977	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000407977	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000583753	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000583753	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000583753	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000584437	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000584437	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000584437	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000577716	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000577716	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000577716	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000581868	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000581868	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000581868	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000577625	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000577625	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000577625	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-3CDS	ENST00000580014	ENST00000260665		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000580014	ENST00000409946		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000580014	ENST00000409659		ChiTaRS3.1			DA756048	RNF43	chr17	56494695	-	LRPPRC	chr2	44121739	-
intron-intron	ENST00000355827	ENST00000449098		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000320084		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000336053		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000554969		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000556142		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000554455		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000430246		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000553753		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000555914		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000555309		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000556628		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000555883		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000556513		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000557201		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000553300		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000355827	ENST00000556897		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000355827	ENST00000420743		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000449098		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000320084		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000336053		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000554969		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000556142		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000554455		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000430246		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000553753		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000555914		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000555309		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000556628		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000555883		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000556513		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000557201		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000553300		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373054	ENST00000556897		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373054	ENST00000420743		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000449098		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000320084		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000336053		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000554969		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000556142		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000554455		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000430246		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000553753		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000555914		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000555309		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000556628		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000555883		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000556513		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000557201		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000553300		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373061	ENST00000556897		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373061	ENST00000420743		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000449098		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000320084		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000336053		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000554969		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000556142		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000554455		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000430246		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000553753		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000555914		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000555309		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000556628		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000555883		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000556513		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000557201		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000553300		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000373049	ENST00000556897		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000373049	ENST00000420743		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000449098		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000320084		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000336053		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000554969		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000556142		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000554455		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000430246		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000553753		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000555914		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000555309		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000556628		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000555883		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000556513		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000557201		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000553300		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-intron	ENST00000324765	ENST00000556897		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
intron-5UTR	ENST00000324765	ENST00000420743		ChiTaRS3.1			AW379408	DIAPH2	chrX	96063757	-	HNRNPC	chr14	21731487	+
In-frame	ENST00000372577	ENST00000322644		ChiTaRS3.1			BE819348	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
5CDS-intron	ENST00000372577	ENST00000572844		ChiTaRS3.1			BE819348	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
intron-3CDS	ENST00000550219	ENST00000322644		ChiTaRS3.1			BE819348	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
intron-intron	ENST00000550219	ENST00000572844		ChiTaRS3.1			BE819348	NUP188	chr9	131768868	+	POLR2A	chr17	7407022	+
intron-3CDS	ENST00000360319	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000360319	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000360319	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000360319	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000360319	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000422373	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000422373	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000422373	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000422373	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000422373	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369850	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369850	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369850	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369850	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369850	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369856	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369856	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000344736	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000344736	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000344736	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000344736	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000344736	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000498491	ENST00000369856		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000498491	ENST00000344736		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BF844478	FLNA	chrX	153594758	+	FLNA	chrX	153594696	-
intron-3UTR	ENST00000426016	ENST00000426016		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000426016	ENST00000402219		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000426016	ENST00000395038		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000426016	ENST00000428721		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000426016	ENST00000472480		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000402219	ENST00000426016		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000402219	ENST00000402219		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000402219	ENST00000395038		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000402219	ENST00000428721		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000402219	ENST00000472480		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000395038	ENST00000426016		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000395038	ENST00000402219		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000395038	ENST00000395038		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000395038	ENST00000428721		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000395038	ENST00000472480		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000428721	ENST00000426016		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000428721	ENST00000402219		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000428721	ENST00000395038		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000428721	ENST00000428721		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000428721	ENST00000472480		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000472480	ENST00000426016		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000472480	ENST00000402219		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000472480	ENST00000395038		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000472480	ENST00000428721		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-intron	ENST00000472480	ENST00000472480		ChiTaRS3.1			AA557998	SOS1	chr2	39212664	-	SOS1	chr2	39212762	+
intron-3UTR	ENST00000373803	ENST00000373803		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000373803	ENST00000359675		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000373803	ENST00000349004		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000373803	ENST00000373773		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000373803	ENST00000540765		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000359675	ENST00000373803		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000359675	ENST00000359675		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000359675	ENST00000349004		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000359675	ENST00000373773		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000359675	ENST00000540765		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000349004	ENST00000373803		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000349004	ENST00000359675		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000349004	ENST00000349004		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000349004	ENST00000373773		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000349004	ENST00000540765		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000373773	ENST00000373803		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000373773	ENST00000359675		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000373773	ENST00000349004		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000373773	ENST00000373773		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000373773	ENST00000540765		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000540765	ENST00000373803		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000540765	ENST00000359675		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-3UTR	ENST00000540765	ENST00000349004		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000540765	ENST00000373773		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
intron-intron	ENST00000540765	ENST00000540765		ChiTaRS3.1			CB217678	NDRG3	chr20	35309294	+	NDRG3	chr20	35280344	+
3UTR-5UTR	ENST00000467100	ENST00000439977		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
3UTR-5UTR	ENST00000467100	ENST00000300302		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
3UTR-5UTR	ENST00000467100	ENST00000344114		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
3UTR-3UTR	ENST00000467100	ENST00000570273		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
3UTR-5UTR	ENST00000467100	ENST00000379792		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
5UTR-5UTR	ENST00000319725	ENST00000439977		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
5UTR-5UTR	ENST00000319725	ENST00000300302		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
5UTR-5UTR	ENST00000319725	ENST00000344114		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
5UTR-3UTR	ENST00000319725	ENST00000570273		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
5UTR-5UTR	ENST00000319725	ENST00000379792		ChiTaRS3.1			DA920088	FUBP3	chr9	133455028	+	HERPUD1	chr16	56966147	+
3UTR-3UTR	ENST00000249647	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000249647	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000249647	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-3UTR	ENST00000249647	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000249647	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000249647	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000566141	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000566141	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000566141	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000566141	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000566141	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000566141	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000564153	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000564153	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000564153	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000564153	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000564153	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000564153	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-3UTR	ENST00000349777	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000349777	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000349777	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-3UTR	ENST00000349777	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000349777	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
3UTR-intron	ENST00000349777	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000567094	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000567094	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000567094	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000567094	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000567094	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000567094	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000397138	ENST00000249647		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000397138	ENST00000566141		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000397138	ENST00000564153		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3UTR	ENST00000397138	ENST00000349777		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000397138	ENST00000567094		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-intron	ENST00000397138	ENST00000397138		ChiTaRS3.1			BU680438	SNAP23	chr15	42825106	-	SNAP23	chr15	42824748	+
intron-3CDS	ENST00000382151	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000382151	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000382151	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000382151	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000382151	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000382151	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000266095	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000266095	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000266095	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000266095	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000266095	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000266095	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000397500	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000397500	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000397500	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000397500	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000397500	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000397500	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000336566	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000336566	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000336566	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000336566	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000336566	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000336566	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000439502	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000439502	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000439502	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000439502	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000439502	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000439502	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000478893	ENST00000382151		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000478893	ENST00000266095		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000478893	ENST00000397500		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000478893	ENST00000336566		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-3CDS	ENST00000478893	ENST00000439502		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
intron-5UTR	ENST00000478893	ENST00000478893		ChiTaRS3.1			BP321628	PISD	chr22	32014953	-	PISD	chr22	32017723	-
3UTR-3CDS	ENST00000400338	ENST00000264833		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
3UTR-3CDS	ENST00000400338	ENST00000590841		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
3UTR-3CDS	ENST00000400335	ENST00000264833		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
3UTR-3CDS	ENST00000400335	ENST00000590841		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000327813	ENST00000264833		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000327813	ENST00000590841		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000407188	ENST00000264833		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000407188	ENST00000590841		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000479755	ENST00000264833		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000479755	ENST00000590841		ChiTaRS3.1			BI037428	KREMEN1	chr22	29540705	-	OLFM2	chr19	9964942	-
intron-3CDS	ENST00000367142	ENST00000367142		ChiTaRS3.1			BG115778	NUCKS1	chr1	205687509	-	NUCKS1	chr1	205689661	-
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			BG115778	NUCKS1	chr1	205687509	-	NUCKS1	chr1	205689661	-
intron-3CDS	ENST00000464938	ENST00000367142		ChiTaRS3.1			BG115778	NUCKS1	chr1	205687509	-	NUCKS1	chr1	205689661	-
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			BG115778	NUCKS1	chr1	205687509	-	NUCKS1	chr1	205689661	-
intron-3CDS	ENST00000390548	ENST00000317025		ChiTaRS3.1			AW844628	IGHG1	chr14	106320815	+	WHSC1L1	chr8	38133215	-
intron-3CDS	ENST00000390548	ENST00000433384		ChiTaRS3.1			AW844628	IGHG1	chr14	106320815	+	WHSC1L1	chr8	38133215	-
intron-3CDS	ENST00000390548	ENST00000527502		ChiTaRS3.1			AW844628	IGHG1	chr14	106320815	+	WHSC1L1	chr8	38133215	-
intron-intron	ENST00000390548	ENST00000316985		ChiTaRS3.1			AW844628	IGHG1	chr14	106320815	+	WHSC1L1	chr8	38133215	-
intron-intron	ENST00000390548	ENST00000525081		ChiTaRS3.1			AW844628	IGHG1	chr14	106320815	+	WHSC1L1	chr8	38133215	-
intron-intron	ENST00000602402	ENST00000341217		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000581407		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000582266		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000452648		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000582059		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000583953		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000577682		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000583522		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000602402	ENST00000581381		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000341217		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000581407		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000582266		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000452648		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000582059		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000583953		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000577682		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000583522		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-intron	ENST00000376795	ENST00000581381		ChiTaRS3.1			BF327158	DNAJC3	chr13	96421588	+	FAM222B	chr17	27103906	-
intron-3CDS	ENST00000216181	ENST00000283882		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-intron	ENST00000216181	ENST00000564286		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-3CDS	ENST00000475726	ENST00000283882		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-intron	ENST00000475726	ENST00000564286		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-3CDS	ENST00000401701	ENST00000283882		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-intron	ENST00000401701	ENST00000564286		ChiTaRS3.1			BF815788	MYH9	chr22	36693062	+	CFDP1	chr16	75339002	+
intron-intron	ENST00000272203	ENST00000308025		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000272203	ENST00000553182		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000414478	ENST00000308025		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000414478	ENST00000553182		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000485632	ENST00000308025		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000485632	ENST00000553182		ChiTaRS3.1			BF989648	PLEKHA6	chr1	204264160	+	DDX23	chr12	49244268	-
intron-intron	ENST00000415149	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000415149	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000415149	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000415149	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000415149	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000415149	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000402543	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000325805	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000416476	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000406780	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000415149		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000402543		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000325805		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000416476		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000406780		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000473542	ENST00000473542		ChiTaRS3.1			AV706718	BBX	chr3	107511029	+	BBX	chr3	107486149	+
intron-intron	ENST00000419197	ENST00000419197		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000419197	ENST00000526888		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000419197	ENST00000527958		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000419197	ENST00000529887		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000419197	ENST00000530272		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000526888	ENST00000419197		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000526888	ENST00000526888		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000526888	ENST00000527958		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000526888	ENST00000529887		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000526888	ENST00000530272		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000527958	ENST00000419197		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000527958	ENST00000526888		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000527958	ENST00000527958		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000527958	ENST00000529887		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000527958	ENST00000530272		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000529887	ENST00000419197		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000529887	ENST00000526888		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000529887	ENST00000527958		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000529887	ENST00000529887		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000529887	ENST00000530272		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000530272	ENST00000419197		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000530272	ENST00000526888		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000530272	ENST00000527958		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000530272	ENST00000529887		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
intron-intron	ENST00000530272	ENST00000530272		ChiTaRS3.1			BE177628	PAFAH1B2	chr11	117026779	-	PAFAH1B2	chr11	117022690	+
Frame-shit	ENST00000322213	ENST00000348405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000513858		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000395310		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000443462		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000509142		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000326950		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000432794		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000311785		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000448323		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000505472		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000500777		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000508502		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000355196		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000264405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000322213	ENST00000505984		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000322213	ENST00000508479		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000322213	ENST00000436790		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000348405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000513858		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000395310		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000443462		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000509142		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000326950		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000432794		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000311785		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000448323		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000505472		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000500777		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000508502		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000355196		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000264405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-3CDS	ENST00000469129	ENST00000505984		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-intron	ENST00000469129	ENST00000508479		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
intron-intron	ENST00000469129	ENST00000436790		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000348405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000513858		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000395310		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000443462		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000509142		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000326950		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000432794		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000311785		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000448323		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000505472		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000500777		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000508502		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000355196		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000264405		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
Frame-shit	ENST00000375340	ENST00000505984		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000375340	ENST00000508479		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
5CDS-intron	ENST00000375340	ENST00000436790		ChiTaRS3.1			DT219678	SMC1A	chrX	53449439	-	SEC31A	chr4	83750212	-
In-frame	ENST00000366711	ENST00000366711		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
5CDS-3UTR	ENST00000366711	ENST00000484749		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
5CDS-5UTR	ENST00000366711	ENST00000546123		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-3CDS	ENST00000484749	ENST00000366711		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-3UTR	ENST00000484749	ENST00000484749		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-5UTR	ENST00000484749	ENST00000546123		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-3CDS	ENST00000546123	ENST00000366711		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-3UTR	ENST00000546123	ENST00000484749		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
intron-5UTR	ENST00000546123	ENST00000546123		ChiTaRS3.1			AW204168	IBA57	chr1	228353569	-	IBA57	chr1	228362420	-
3UTR-3UTR	ENST00000359653	ENST00000359653		ChiTaRS3.1			AL135088	ZRANB1	chr10	126673699	-	ZRANB1	chr10	126673738	+
3UTR-intron	ENST00000359653	ENST00000471421		ChiTaRS3.1			AL135088	ZRANB1	chr10	126673699	-	ZRANB1	chr10	126673738	+
intron-3UTR	ENST00000471421	ENST00000359653		ChiTaRS3.1			AL135088	ZRANB1	chr10	126673699	-	ZRANB1	chr10	126673738	+
intron-intron	ENST00000471421	ENST00000471421		ChiTaRS3.1			AL135088	ZRANB1	chr10	126673699	-	ZRANB1	chr10	126673738	+
intron-3CDS	ENST00000262189	ENST00000217423		ChiTaRS3.1			AK130538	KMT2C	chr7	151973010	-	CST4	chr20	23667835	-
intron-3CDS	ENST00000355193	ENST00000217423		ChiTaRS3.1			AK130538	KMT2C	chr7	151973010	-	CST4	chr20	23667835	-
intron-3CDS	ENST00000485655	ENST00000217423		ChiTaRS3.1			AK130538	KMT2C	chr7	151973010	-	CST4	chr20	23667835	-
intron-3CDS	ENST00000485241	ENST00000217423		ChiTaRS3.1			AK130538	KMT2C	chr7	151973010	-	CST4	chr20	23667835	-
5CDS-intron	ENST00000361204	ENST00000238112		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
5CDS-intron	ENST00000361204	ENST00000460593		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
5CDS-intron	ENST00000361204	ENST00000489403		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000238112		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000460593		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000489403		ChiTaRS3.1			BF312808	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835148	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-3UTR	ENST00000371828	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371828	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371802	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371856	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000347458	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000340954	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000371792	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000371828		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000371802		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000371856		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000347458		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000340954		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000371792		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3UTR	ENST00000360426	ENST00000360426		ChiTaRS3.1			CD557318	STAU1	chr20	47730007	+	STAU1	chr20	47730993	-
intron-3CDS	ENST00000430325	ENST00000430325		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000430325	ENST00000513948		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000430325	ENST00000433940		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000430325		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000513948		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000513948	ENST00000433940		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000430325		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000513948		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000433940	ENST00000433940		ChiTaRS3.1			AA988078	CNTD2	chr19	40728221	+	CNTD2	chr19	40730555	-
intron-3CDS	ENST00000334258	ENST00000504734		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000334258	ENST00000415618		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000334258	ENST00000452673		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000334258	ENST00000247461		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000334258	ENST00000512607		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-intron	ENST00000334258	ENST00000503126		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000554873	ENST00000504734		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000554873	ENST00000415618		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000554873	ENST00000452673		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000554873	ENST00000247461		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000554873	ENST00000512607		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-intron	ENST00000554873	ENST00000503126		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000557275	ENST00000504734		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000557275	ENST00000415618		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000557275	ENST00000452673		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000557275	ENST00000247461		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000557275	ENST00000512607		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-intron	ENST00000557275	ENST00000503126		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000553340	ENST00000504734		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000553340	ENST00000415618		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000553340	ENST00000452673		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000553340	ENST00000247461		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-3CDS	ENST00000553340	ENST00000512607		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-intron	ENST00000553340	ENST00000503126		ChiTaRS3.1			BF818698	SYNE3	chr14	95910451	+	CANX	chr5	179150718	-
intron-intron	ENST00000526180	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000526180	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000526180	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533280	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533280	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533280	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000525823	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000525823	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000525823	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533475	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533475	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533475	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000527950	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000527950	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000527950	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000227251	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000227251	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000227251	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000531198	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000531198	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000531198	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533971	ENST00000392870		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533971	ENST00000369108		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533971	ENST00000473264		ChiTaRS3.1			BF830028	CRYAB	chr11	111781139	+	GRK5	chr10	121050758	-
intron-intron	ENST00000533902	ENST00000533902		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000280258		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000441050		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000533902	ENST00000531521		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000533902		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000280258		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000441050		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000280258	ENST00000531521		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000533902		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000280258		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000441050		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000441050	ENST00000531521		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000533902		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000280258		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000441050		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000531521	ENST00000531521		ChiTaRS3.1			CV359338	PRSS23	chr11	86515338	-	PRSS23	chr11	86515542	+
intron-intron	ENST00000261749	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000261749	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000561060	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559157	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558494	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559835	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000559775	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558688	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000261749		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000561060		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559157		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558494		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559835		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000559775		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558688		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000558087	ENST00000558087		ChiTaRS3.1			AA972888	ZFAND6	chr15	80418001	+	ZFAND6	chr15	80416786	+
intron-intron	ENST00000394417	ENST00000342247		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000400585		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000497534		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000400573		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000262608		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000342247		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000400585		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000497534		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000400573		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000262608		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000342247		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000400585		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000497534		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000400573		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000262608		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000342247		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000400585		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000497534		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000400573		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000262608		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000342247		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000400585		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000497534		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000400573		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000262608		ChiTaRS3.1			BI026848	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-3UTR	ENST00000441740	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000331559	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000561096	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000561293	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000560253	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000558555	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-3UTR	ENST00000559524	ENST00000604411		ChiTaRS3.1			AI952798	MEIS3	chr19	47906439	+	TSIX	chrX	73046462	+
intron-intron	ENST00000378330	ENST00000378330		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000378330	ENST00000301030		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000378330	ENST00000563291		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000378330	ENST00000567736		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000301030	ENST00000378330		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000301030	ENST00000301030		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000301030	ENST00000563291		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000301030	ENST00000567736		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000563291	ENST00000378330		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000563291	ENST00000301030		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000563291	ENST00000563291		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000563291	ENST00000567736		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000567736	ENST00000378330		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000567736	ENST00000301030		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000567736	ENST00000563291		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-intron	ENST00000567736	ENST00000567736		ChiTaRS3.1			BF369488	ANKRD11	chr16	89463642	-	ANKRD11	chr16	89464326	-
intron-3CDS	ENST00000361204	ENST00000378330		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-3CDS	ENST00000361204	ENST00000301030		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-intron	ENST00000361204	ENST00000563291		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-intron	ENST00000361204	ENST00000567736		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-3CDS	ENST00000491541	ENST00000378330		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-3CDS	ENST00000491541	ENST00000301030		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-intron	ENST00000491541	ENST00000563291		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-intron	ENST00000491541	ENST00000567736		ChiTaRS3.1			AA340708	SREBF2	chr22	42303328	-	ANKRD11	chr16	89350254	-
intron-intron	ENST00000485761	ENST00000265036		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000485761	ENST00000453022		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000485761	ENST00000545085		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000485761	ENST00000509006		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000367036	ENST00000265036		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000367036	ENST00000453022		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000367036	ENST00000545085		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000367036	ENST00000509006		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000310833	ENST00000265036		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000310833	ENST00000453022		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000310833	ENST00000545085		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000310833	ENST00000509006		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000356522	ENST00000265036		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000356522	ENST00000453022		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000356522	ENST00000545085		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000356522	ENST00000509006		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000537704	ENST00000265036		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000537704	ENST00000453022		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000537704	ENST00000545085		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-intron	ENST00000537704	ENST00000509006		ChiTaRS3.1			AI394178	CD34	chr1	208060067	+	DEPDC1B	chr5	59895934	+
intron-3UTR	ENST00000375050	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000375050	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000375050	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000375050	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000453487	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000453487	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000453487	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000453487	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549520	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549520	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549520	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549520	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000551389	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000551389	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000551389	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000551389	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549406	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549406	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549406	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549406	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000453961	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000453961	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000453961	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000453961	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000553136	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000553136	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000553136	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000553136	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000547363	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000547363	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000547363	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000547363	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000552094	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000552094	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000552094	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000552094	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000420432	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000420432	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000420432	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000420432	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000553184	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000553184	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000553184	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000553184	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550085	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550085	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550085	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550085	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000383270	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000383270	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000383270	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000383270	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000551651	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000551651	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000551651	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000551651	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000546984	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000546984	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000546984	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000546984	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550532	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550532	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550532	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550532	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000431537	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000431537	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000431537	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000431537	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549894	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549894	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549894	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549894	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000548572	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000548572	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000548572	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000548572	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000546976	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000546976	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000546976	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000546976	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000433552	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000433552	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000433552	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000433552	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550227	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550227	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000550227	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000550227	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549969	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549969	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000549969	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000549969	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000548776	ENST00000428559		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000548776	ENST00000532964		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-3UTR	ENST00000548776	ENST00000526530		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
intron-intron	ENST00000548776	ENST00000532573		ChiTaRS3.1			BF589398	PBX2	chr6	3500329	+	DERA	chr12	16189776	-
3UTR-intron	ENST00000402703	ENST00000273666		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000402703	ENST00000471454		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000402703	ENST00000472879		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000402703	ENST00000497029		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000402703	ENST00000492541		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000361487	ENST00000273666		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000361487	ENST00000471454		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000361487	ENST00000472879		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000361487	ENST00000497029		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
3UTR-intron	ENST00000361487	ENST00000492541		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000554201	ENST00000273666		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000554201	ENST00000471454		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000554201	ENST00000472879		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000554201	ENST00000497029		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000554201	ENST00000492541		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000557107	ENST00000273666		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000557107	ENST00000471454		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000557107	ENST00000472879		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000557107	ENST00000497029		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-intron	ENST00000557107	ENST00000492541		ChiTaRS3.1			BE148668	PAX9	chr14	37145740	-	STXBP5L	chr3	120830720	-
intron-3UTR	ENST00000274901	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000274901	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000398661	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000398661	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000370850	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000370850	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000508459	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000508459	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000308161	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000308161	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000428842	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000428842	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000358072	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000358072	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-3UTR	ENST00000507223	ENST00000216044		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
intron-intron	ENST00000507223	ENST00000460605		ChiTaRS3.1			T70878	HMGCLL1	chr6	55358846	-	GTPBP1	chr22	39128959	+
3UTR-3CDS	ENST00000356455	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000356455	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000356455	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000356455	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000356455	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000356455	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000356455	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000405520	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000405520	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000405520	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000405520	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000405520	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000405520	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000405520	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000335046	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000335046	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000335046	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000335046	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000335046	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000335046	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000335046	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000243893	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000243893	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000243893	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000243893	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000243893	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000243893	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000243893	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000352551	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000352551	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000352551	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000352551	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000352551	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000352551	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000352551	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000372568	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000372568	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3CDS	ENST00000372568	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000372568	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000372568	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000372568	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-3UTR	ENST00000372568	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-3CDS	ENST00000496085	ENST00000356455		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-3CDS	ENST00000496085	ENST00000405520		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-3CDS	ENST00000496085	ENST00000335046		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-intron	ENST00000496085	ENST00000243893		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-intron	ENST00000496085	ENST00000352551		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-intron	ENST00000496085	ENST00000372568		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
intron-3UTR	ENST00000496085	ENST00000496085		ChiTaRS3.1			AW404348	UBE2C	chr20	44445455	-	UBE2C	chr20	44443085	+
3UTR-intron	ENST00000305233	ENST00000404397		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000305233	ENST00000395323		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000305233	ENST00000406087		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000305233	ENST00000401506		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000305233	ENST00000467242		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000305233	ENST00000407930		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000404397		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000395323		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000406087		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000401506		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000467242		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
3UTR-intron	ENST00000368609	ENST00000407930		ChiTaRS3.1			N75418	PWWP2B	chr10	134230725	+	LBH	chr2	30478308	-
intron-intron	ENST00000272252	ENST00000389048		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000272252	ENST00000431873		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000272252	ENST00000498037		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000410063	ENST00000389048		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000410063	ENST00000431873		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000410063	ENST00000498037		ChiTaRS3.1			CR997728	GALM	chr2	38905701	-	ALK	chr2	30081666	-
intron-intron	ENST00000318130	ENST00000486869		ChiTaRS3.1			M16328	EDEM3	chr1	184664531	+	GBAP1	chr1	155210991	-
intron-intron	ENST00000367512	ENST00000486869		ChiTaRS3.1			M16328	EDEM3	chr1	184664531	+	GBAP1	chr1	155210991	-
intron-intron	ENST00000466392	ENST00000486869		ChiTaRS3.1			M16328	EDEM3	chr1	184664531	+	GBAP1	chr1	155210991	-
intron-intron	ENST00000465357	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000465357	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000465357	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000465357	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000539517	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000539517	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000539517	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000539517	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000267422	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000267422	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000267422	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000267422	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000344429	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000344429	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000344429	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000344429	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000547619	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000547619	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000547619	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000547619	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000574031	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000574031	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000574031	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000574031	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000551754	ENST00000295568		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000551754	ENST00000469661		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000551754	ENST00000460576		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
intron-intron	ENST00000551754	ENST00000417314		ChiTaRS3.1			BF931598	NOVA1	chr14	27018917	+	KBTBD8	chr3	67053400	+
3UTR-3CDS	ENST00000335895	ENST00000371828		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000371802		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000371856		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000347458		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000340954		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000371792		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000335895	ENST00000360426		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000371828		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000371802		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000371856		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000347458		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000340954		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000371792		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
Frame-shit	ENST00000514505	ENST00000360426		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000371828		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000371802		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000371856		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000347458		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000340954		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000371792		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
3UTR-3CDS	ENST00000380591	ENST00000360426		ChiTaRS3.1			AA025528	BTF3	chr5	72801260	-	STAU1	chr20	47739698	+
intron-3CDS	ENST00000405486	ENST00000405486		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000405486	ENST00000356244		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000405486	ENST00000455915		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000405486	ENST00000407260		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000356244	ENST00000405486		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000356244	ENST00000356244		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000356244	ENST00000455915		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000356244	ENST00000407260		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000455915	ENST00000405486		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000455915	ENST00000356244		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000455915	ENST00000455915		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000455915	ENST00000407260		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000407260	ENST00000405486		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000407260	ENST00000356244		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000407260	ENST00000455915		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
intron-3CDS	ENST00000407260	ENST00000407260		ChiTaRS3.1			BU527948	RANGAP1	chr22	41645385	-	RANGAP1	chr22	41660761	-
3UTR-5UTR	ENST00000381440	ENST00000233838		ChiTaRS3.1			L17128	ITPRIPL2	chr16	19130736	+	GGCX	chr2	85788583	-
3UTR-5UTR	ENST00000381440	ENST00000430215		ChiTaRS3.1			L17128	ITPRIPL2	chr16	19130736	+	GGCX	chr2	85788583	-
3UTR-intron	ENST00000381440	ENST00000473665		ChiTaRS3.1			L17128	ITPRIPL2	chr16	19130736	+	GGCX	chr2	85788583	-
3UTR-intron	ENST00000328735	ENST00000429029		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000262177		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000452797		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000443280		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000494267		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000429029		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000262177		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000452797		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000443280		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000494267		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000429029		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000262177		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000452797		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000443280		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000494267		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000429029		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000262177		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000452797		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000443280		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000494267		ChiTaRS3.1			BE552198	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
intron-3UTR	ENST00000559228	ENST00000297540		ChiTaRS3.1			AI766928	FAM63B	chr15	59117088	-	PHAX	chr5	125960999	-
intron-intron	ENST00000559228	ENST00000514725		ChiTaRS3.1			AI766928	FAM63B	chr15	59117088	-	PHAX	chr5	125960999	-
intron-3UTR	ENST00000450403	ENST00000297540		ChiTaRS3.1			AI766928	FAM63B	chr15	59117088	-	PHAX	chr5	125960999	-
intron-intron	ENST00000450403	ENST00000514725		ChiTaRS3.1			AI766928	FAM63B	chr15	59117088	-	PHAX	chr5	125960999	-
intron-intron	ENST00000301452	ENST00000534358		ChiTaRS3.1			AM050805	ACER1	chr19	6308785	-	KMT2A	chr11	118360392	+
intron-intron	ENST00000301452	ENST00000389506		ChiTaRS3.1			AM050805	ACER1	chr19	6308785	-	KMT2A	chr11	118360392	+
intron-intron	ENST00000301452	ENST00000354520		ChiTaRS3.1			AM050805	ACER1	chr19	6308785	-	KMT2A	chr11	118360392	+
intron-intron	ENST00000301452	ENST00000420751		ChiTaRS3.1			AM050805	ACER1	chr19	6308785	-	KMT2A	chr11	118360392	+
Frame-shit	ENST00000261839	ENST00000261844		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5CDS-intron	ENST00000261839	ENST00000562351		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5CDS-intron	ENST00000261839	ENST00000546305		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-3CDS	ENST00000443683	ENST00000261844		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-intron	ENST00000443683	ENST00000562351		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-intron	ENST00000443683	ENST00000546305		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-3CDS	ENST00000541028	ENST00000261844		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-intron	ENST00000541028	ENST00000562351		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
5UTR-intron	ENST00000541028	ENST00000546305		ChiTaRS3.1			DB069118	MYO5C	chr15	52587807	-	FAM214A	chr15	52906057	-
intron-3UTR	ENST00000260810	ENST00000257287		ChiTaRS3.1			AA704218	TOPBP1	chr3	133364745	+	CEP135	chr4	56898345	-
intron-intron	ENST00000260810	ENST00000422247		ChiTaRS3.1			AA704218	TOPBP1	chr3	133364745	+	CEP135	chr4	56898345	-
intron-3UTR	ENST00000511439	ENST00000257287		ChiTaRS3.1			AA704218	TOPBP1	chr3	133364745	+	CEP135	chr4	56898345	-
intron-intron	ENST00000511439	ENST00000422247		ChiTaRS3.1			AA704218	TOPBP1	chr3	133364745	+	CEP135	chr4	56898345	-
intron-3CDS	ENST00000395965	ENST00000492661		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000395965	ENST00000460393		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000395965	ENST00000382989		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000395965	ENST00000462745		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000395965	ENST00000493237		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000395965	ENST00000360490		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000395965	ENST00000477669		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000505869	ENST00000492661		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000505869	ENST00000460393		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000505869	ENST00000382989		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000505869	ENST00000462745		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000505869	ENST00000493237		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000505869	ENST00000360490		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000505869	ENST00000477669		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000509739	ENST00000492661		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000509739	ENST00000460393		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509739	ENST00000382989		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509739	ENST00000462745		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509739	ENST00000493237		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509739	ENST00000360490		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509739	ENST00000477669		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000509163	ENST00000492661		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000509163	ENST00000460393		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509163	ENST00000382989		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509163	ENST00000462745		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509163	ENST00000493237		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509163	ENST00000360490		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000509163	ENST00000477669		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000504768	ENST00000492661		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-3CDS	ENST00000504768	ENST00000460393		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000504768	ENST00000382989		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000504768	ENST00000462745		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000504768	ENST00000493237		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000504768	ENST00000360490		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000504768	ENST00000477669		ChiTaRS3.1			BU631638	FAM172A	chr5	93018301	+	MME	chr3	154890359	-
intron-intron	ENST00000316157	ENST00000263904		ChiTaRS3.1			T05378	LARP4B	chr10	876457	+	STAM2	chr2	152986620	+
intron-intron	ENST00000316157	ENST00000465460		ChiTaRS3.1			T05378	LARP4B	chr10	876457	+	STAM2	chr2	152986620	+
intron-intron	ENST00000469487	ENST00000263904		ChiTaRS3.1			T05378	LARP4B	chr10	876457	+	STAM2	chr2	152986620	+
intron-intron	ENST00000469487	ENST00000465460		ChiTaRS3.1			T05378	LARP4B	chr10	876457	+	STAM2	chr2	152986620	+
intron-intron	ENST00000368682	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368682	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000354650	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229471	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368667	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000368678	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000229470	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000356013	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000538466	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000368682		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000354650		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000229471		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000368667		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000368678		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000229470		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000356013		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000538466		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
intron-intron	ENST00000476769	ENST00000476769		ChiTaRS3.1			BQ924758	FYN	chr6	111984539	+	FYN	chr6	111984473	-
Frame-shit	ENST00000368020	ENST00000337768		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368020	ENST00000406540		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000368020	ENST00000405491		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368020	ENST00000464789		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
5CDS-intron	ENST00000368020	ENST00000404798		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368021	ENST00000337768		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000368021	ENST00000406540		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368021	ENST00000405491		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000368021	ENST00000464789		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
5CDS-intron	ENST00000368021	ENST00000404798		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000435396	ENST00000337768		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000435396	ENST00000406540		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000435396	ENST00000405491		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000435396	ENST00000464789		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
5CDS-intron	ENST00000435396	ENST00000404798		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000368019	ENST00000337768		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368019	ENST00000406540		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
Frame-shit	ENST00000368019	ENST00000405491		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
In-frame	ENST00000368019	ENST00000464789		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
5CDS-intron	ENST00000368019	ENST00000404798		ChiTaRS3.1			BP257468	USF1	chr1	161011907	-	SUPT7L	chr2	27884169	-
3UTR-3UTR	ENST00000373880	ENST00000373880		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-intron	ENST00000373880	ENST00000433653		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-3UTR	ENST00000373880	ENST00000373878		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-intron	ENST00000373880	ENST00000472199		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-3UTR	ENST00000433653	ENST00000373880		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-intron	ENST00000433653	ENST00000433653		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-3UTR	ENST00000433653	ENST00000373878		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-intron	ENST00000433653	ENST00000472199		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-3UTR	ENST00000373878	ENST00000373880		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-intron	ENST00000373878	ENST00000433653		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-3UTR	ENST00000373878	ENST00000373878		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
3UTR-intron	ENST00000373878	ENST00000472199		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-3UTR	ENST00000472199	ENST00000373880		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-intron	ENST00000472199	ENST00000433653		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-3UTR	ENST00000472199	ENST00000373878		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-intron	ENST00000472199	ENST00000472199		ChiTaRS3.1			N64328	PHYHIPL	chr10	61006090	+	PHYHIPL	chr10	61006112	-
intron-intron	ENST00000356495	ENST00000452313		ChiTaRS3.1			BE083578	PIGR	chr1	207103650	+	NPIPB7	chr16	28998176	-
intron-intron	ENST00000487208	ENST00000452313		ChiTaRS3.1			BE083578	PIGR	chr1	207103650	+	NPIPB7	chr16	28998176	-
intron-3UTR	ENST00000328848	ENST00000328848		ChiTaRS3.1			AI934278	NOP10	chr15	34633995	+	NOP10	chr15	34634167	-
intron-3UTR	ENST00000328848	ENST00000557912		ChiTaRS3.1			AI934278	NOP10	chr15	34633995	+	NOP10	chr15	34634167	-
intron-3UTR	ENST00000557912	ENST00000328848		ChiTaRS3.1			AI934278	NOP10	chr15	34633995	+	NOP10	chr15	34634167	-
intron-3UTR	ENST00000557912	ENST00000557912		ChiTaRS3.1			AI934278	NOP10	chr15	34633995	+	NOP10	chr15	34634167	-
5CDS-3UTR	ENST00000395309	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395309	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395309	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395309	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000413890	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000413890	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000413890	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000413890	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000438792	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000438792	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000438792	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000438792	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000395314	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395314	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395314	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395314	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000395308	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395308	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395308	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395308	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000395311	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395311	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395311	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000395311	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-3UTR	ENST00000416613	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000416613	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000416613	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
5CDS-intron	ENST00000416613	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-3UTR	ENST00000554507	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000554507	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000554507	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000554507	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-3UTR	ENST00000555573	ENST00000303391		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000555573	ENST00000453960		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000555573	ENST00000407218		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
intron-intron	ENST00000555573	ENST00000460227		ChiTaRS3.1			BF761248	KTN1	chr14	56078842	-	MECP2	chrX	153287905	-
3UTR-3UTR	ENST00000373647	ENST00000373647		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
3UTR-intron	ENST00000373647	ENST00000493854		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
3UTR-intron	ENST00000373647	ENST00000373643		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-3UTR	ENST00000493854	ENST00000373647		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-intron	ENST00000493854	ENST00000493854		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-intron	ENST00000493854	ENST00000373643		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-3UTR	ENST00000373643	ENST00000373647		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-intron	ENST00000373643	ENST00000493854		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
intron-intron	ENST00000373643	ENST00000373643		ChiTaRS3.1			AW801218	RABGAP1	chr9	125866851	+	RABGAP1	chr9	125866930	-
5CDS-3UTR	ENST00000371627	ENST00000255608		ChiTaRS3.1			BC023218	TNKS2	chr10	93608181	+	BTBD2	chr19	1985500	-
5CDS-intron	ENST00000371627	ENST00000590646		ChiTaRS3.1			BC023218	TNKS2	chr10	93608181	+	BTBD2	chr19	1985500	-
intron-3CDS	ENST00000556478	ENST00000249269		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
intron-3CDS	ENST00000556478	ENST00000428154		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
intron-5UTR	ENST00000556478	ENST00000420236		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000441560	ENST00000249269		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000441560	ENST00000428154		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-5UTR	ENST00000441560	ENST00000420236		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000357032	ENST00000249269		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000357032	ENST00000428154		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-5UTR	ENST00000357032	ENST00000420236		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000354525	ENST00000249269		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000354525	ENST00000428154		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-5UTR	ENST00000354525	ENST00000420236		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000358385	ENST00000249269		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-3CDS	ENST00000358385	ENST00000428154		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
3UTR-5UTR	ENST00000358385	ENST00000420236		ChiTaRS3.1			AI205138	ATL1	chr14	51099063	-	PMPCB	chr7	102939038	+
5CDS-intron	ENST00000330498	ENST00000330498		ChiTaRS3.1			BQ367848	SLC5A2	chr16	31501674	+	SLC5A2	chr16	31873291	-
5CDS-intron	ENST00000330498	ENST00000564197		ChiTaRS3.1			BQ367848	SLC5A2	chr16	31501674	+	SLC5A2	chr16	31873291	-
intron-intron	ENST00000564197	ENST00000330498		ChiTaRS3.1			BQ367848	SLC5A2	chr16	31501674	+	SLC5A2	chr16	31873291	-
intron-intron	ENST00000564197	ENST00000564197		ChiTaRS3.1			BQ367848	SLC5A2	chr16	31501674	+	SLC5A2	chr16	31873291	-
intron-3UTR	ENST00000442011	ENST00000372836		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000442011	ENST00000394142		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000305126	ENST00000372836		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000305126	ENST00000394142		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000508076	ENST00000372836		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000508076	ENST00000394142		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000504185	ENST00000372836		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000504185	ENST00000394142		ChiTaRS3.1			AB209598	TGFBI	chr5	135390878	+	CNPY3	chr6	42906903	+
intron-3UTR	ENST00000292205	ENST00000292205		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000292205	ENST00000368474		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000292205	ENST00000368471		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-intron	ENST00000292205	ENST00000471068		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368474	ENST00000292205		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368474	ENST00000368474		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368474	ENST00000368471		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-intron	ENST00000368474	ENST00000471068		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368471	ENST00000292205		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368471	ENST00000368474		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000368471	ENST00000368471		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-intron	ENST00000368471	ENST00000471068		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000471068	ENST00000292205		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000471068	ENST00000368474		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-3UTR	ENST00000471068	ENST00000368471		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
intron-intron	ENST00000471068	ENST00000471068		ChiTaRS3.1			BU676948	ADAR	chr1	154555061	+	ADAR	chr1	154555228	-
3UTR-3UTR	ENST00000393784	ENST00000393784		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
3UTR-intron	ENST00000393784	ENST00000519860		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
3UTR-intron	ENST00000393784	ENST00000523291		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
3UTR-intron	ENST00000393784	ENST00000326654		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-3UTR	ENST00000519860	ENST00000393784		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000519860	ENST00000519860		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000519860	ENST00000523291		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000519860	ENST00000326654		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-3UTR	ENST00000523291	ENST00000393784		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000523291	ENST00000519860		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000523291	ENST00000523291		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000523291	ENST00000326654		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-3UTR	ENST00000326654	ENST00000393784		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000326654	ENST00000519860		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000326654	ENST00000523291		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-intron	ENST00000326654	ENST00000326654		ChiTaRS3.1			CN411868	ERGIC1	chr5	172378975	-	ERGIC1	chr5	172379088	+
intron-3UTR	ENST00000367306	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000367306	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000367306	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000367306	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000340006	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000340006	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000340006	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000340006	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000531916	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000531916	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000531916	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000531916	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000532460	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000532460	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000532460	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000532460	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000533432	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000533432	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000533432	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000533432	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000526723	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000526723	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000526723	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000526723	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000458271	ENST00000382518		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000458271	ENST00000009180		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000458271	ENST00000382515		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-3UTR	ENST00000458271	ENST00000481267		ChiTaRS3.1			BF767858	CSRP1	chr1	201453405	-	CD9	chr12	6347041	+
intron-intron	ENST00000547956	ENST00000320895		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000547956	ENST00000507807		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000547956	ENST00000320927		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000547956	ENST00000506641		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000549260	ENST00000320895		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000549260	ENST00000507807		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000549260	ENST00000320927		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000549260	ENST00000506641		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000303694	ENST00000320895		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000303694	ENST00000507807		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000303694	ENST00000320927		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000303694	ENST00000506641		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000546689	ENST00000320895		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000546689	ENST00000507807		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000546689	ENST00000320927		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000546689	ENST00000506641		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000550711	ENST00000320895		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000550711	ENST00000507807		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000550711	ENST00000320927		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-intron	ENST00000550711	ENST00000506641		ChiTaRS3.1			BF922748	CHST11	chr12	105074266	-	CLPTM1L	chr5	1336339	-
intron-3CDS	ENST00000376902	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376902	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376902	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376902	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000533330	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000533330	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000533330	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000533330	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376917	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376917	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376917	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376917	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376888	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376888	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376888	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376888	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376894	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376894	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376894	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376894	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396704	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396704	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396704	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000396704	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000416766	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000416766	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000416766	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000416766	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483013	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483013	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483013	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000483013	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000490427	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000490427	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000490427	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000490427	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494692	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494692	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494692	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000494692	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376898	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376898	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376898	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376898	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396701	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396701	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000396701	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000396701	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376891	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376891	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000376891	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000376891	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000431798	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000431798	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000431798	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000431798	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000469603	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000469603	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000469603	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000469603	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548017	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548017	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548017	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000548017	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547913	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547913	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547913	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000547913	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551392	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551392	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551392	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000551392	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000417019	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000417019	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000417019	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000417019	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551072	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551072	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551072	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000551072	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000449096	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000449096	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000449096	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000449096	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439634	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439634	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439634	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000439634	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000418693	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000418693	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000418693	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000418693	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415546	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415546	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415546	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000415546	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000420045	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000420045	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000420045	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000420045	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430351	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430351	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430351	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000430351	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000477504	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000477504	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000477504	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000477504	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552956	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552956	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552956	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000552956	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550849	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550849	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550849	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000550849	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549492	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549492	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549492	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000549492	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552906	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552906	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552906	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000552906	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383525	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383525	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383525	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000383525	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439884	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439884	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000439884	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000439884	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383521	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383521	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383521	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000383521	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400669	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400669	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400669	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000400669	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400671	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400671	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400671	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000400671	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000412760	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000412760	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000412760	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000412760	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444952	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444952	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444952	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000444952	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494392	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494392	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000494392	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000494392	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551175	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551175	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551175	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000551175	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548042	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548042	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548042	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000548042	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550349	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550349	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550349	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000550349	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000432271	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000432271	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000432271	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000432271	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549339	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549339	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549339	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000549339	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000425145	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000425145	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000425145	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000425145	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430264	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430264	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000430264	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000430264	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427061	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427061	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427061	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000427061	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000414889	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000414889	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000414889	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000414889	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000434177	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000434177	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000434177	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000434177	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452233	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452233	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452233	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000452233	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497074	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497074	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497074	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000497074	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452744	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452744	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000452744	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000452744	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550605	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550605	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550605	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000550605	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000546555	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000546555	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000546555	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000546555	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550041	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550041	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000550041	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000550041	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000429153	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000429153	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000429153	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000429153	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000450634	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000450634	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000450634	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000450634	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400668	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400668	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400668	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000400668	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000453271	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000453271	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000453271	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000453271	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000411455	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000411455	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000411455	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000411455	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000459677	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000459677	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000459677	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000459677	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497130	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497130	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000497130	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000497130	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547083	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547083	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547083	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000547083	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548951	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548951	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548951	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000548951	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549967	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549967	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549967	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000549967	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383630	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383630	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383630	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000383630	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552767	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552767	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000552767	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000552767	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000259891	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000259891	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000259891	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000259891	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415631	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415631	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000415631	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000415631	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000359539	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000359539	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000359539	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000359539	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442444	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442444	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442444	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000442444	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400688	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400688	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000400688	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000400688	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383631	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383631	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000383631	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000383631	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000484234	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000484234	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000484234	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000484234	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547293	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547293	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547293	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000547293	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551993	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551993	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551993	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000551993	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548521	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548521	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000548521	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000548521	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427289	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427289	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000427289	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000427289	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551326	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551326	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000551326	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000551326	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000423895	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000423895	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000423895	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000423895	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000457626	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000457626	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000457626	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000457626	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000421125	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000421125	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000421125	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000421125	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444674	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444674	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000444674	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000444674	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000440561	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000440561	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000440561	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000440561	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000426782	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000426782	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000426782	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000426782	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000478704	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000478704	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000478704	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000478704	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549239	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549239	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000549239	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000549239	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547390	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547390	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000547390	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000547390	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553111	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553111	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553111	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000553111	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000447285	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000447285	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000447285	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000447285	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553085	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553085	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000553085	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000553085	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419309	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419309	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419309	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000419309	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000438803	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000438803	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000438803	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000438803	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442244	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442244	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000442244	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000442244	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000441138	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000441138	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000441138	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000441138	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000433500	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000433500	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000433500	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000433500	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419274	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419274	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000419274	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000419274	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483865	ENST00000266087		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483865	ENST00000382058		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3CDS	ENST00000483865	ENST00000397426		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-intron	ENST00000483865	ENST00000465418		ChiTaRS3.1			BG217428	MOG	chr6	976307	+	FBXO7	chr22	32881156	-
intron-3UTR	ENST00000293760	ENST00000293760		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000293760	ENST00000508327		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000293760	ENST00000502643		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-3UTR	ENST00000508327	ENST00000293760		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000508327	ENST00000508327		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000508327	ENST00000502643		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-3UTR	ENST00000502643	ENST00000293760		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000502643	ENST00000508327		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-intron	ENST00000502643	ENST00000502643		ChiTaRS3.1			BM986968	LEMD2	chr6	33739126	+	LEMD2	chr6	33739161	-
intron-3CDS	ENST00000295055	ENST00000295055		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-3CDS	ENST00000295055	ENST00000534090		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-5UTR	ENST00000295055	ENST00000465960		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-3CDS	ENST00000534090	ENST00000295055		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-3CDS	ENST00000534090	ENST00000534090		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-5UTR	ENST00000534090	ENST00000465960		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-3CDS	ENST00000465960	ENST00000295055		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-3CDS	ENST00000465960	ENST00000534090		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-5UTR	ENST00000465960	ENST00000465960		ChiTaRS3.1			BX647678	CAPN13	chr2	30961154	+	CAPN13	chr2	30980959	-
intron-intron	ENST00000261600	ENST00000261600		ChiTaRS3.1			AA767078	THOC1	chr18	263134	+	THOC1	chr18	224741	+
intron-intron	ENST00000261600	ENST00000582313		ChiTaRS3.1			AA767078	THOC1	chr18	263134	+	THOC1	chr18	224741	+
intron-intron	ENST00000582313	ENST00000261600		ChiTaRS3.1			AA767078	THOC1	chr18	263134	+	THOC1	chr18	224741	+
intron-intron	ENST00000582313	ENST00000582313		ChiTaRS3.1			AA767078	THOC1	chr18	263134	+	THOC1	chr18	224741	+
intron-3UTR	ENST00000309428	ENST00000309428		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000309428	ENST00000585894		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000309428	ENST00000543197		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-3UTR	ENST00000585894	ENST00000309428		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000585894	ENST00000585894		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000585894	ENST00000543197		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-3UTR	ENST00000543197	ENST00000309428		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000543197	ENST00000585894		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
intron-intron	ENST00000543197	ENST00000543197		ChiTaRS3.1			AW955268	FAM134C	chr17	40731793	-	FAM134C	chr17	40731864	+
5CDS-3UTR	ENST00000413916	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
5CDS-3UTR	ENST00000309315	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
5CDS-3UTR	ENST00000441627	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
5CDS-3UTR	ENST00000433667	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
5CDS-3UTR	ENST00000265346	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
intron-3UTR	ENST00000463931	ENST00000359943		ChiTaRS3.1			BC016968	ZMIZ2	chr7	44805086	+	FAM3C	chr7	120988956	-
intron-3CDS	ENST00000455147	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000455147	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000455147	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-3CDS	ENST00000266563	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-3CDS	ENST00000266563	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-intron	ENST00000266563	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000545220	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000545220	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000545220	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000434354	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000434354	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000434354	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000420616	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000420616	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000420616	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000412720	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-3CDS	ENST00000412720	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000412720	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-3CDS	ENST00000266564	ENST00000381480		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-3CDS	ENST00000266564	ENST00000543576		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
3UTR-intron	ENST00000266564	ENST00000591030		ChiTaRS3.1			BE696248	PEX5	chr12	7363637	-	DENND1C	chr19	6468930	-
intron-intron	ENST00000502517	ENST00000330909		ChiTaRS3.1			AW753078	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000402939		ChiTaRS3.1			AW753078	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000483466		ChiTaRS3.1			AW753078	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000497477		ChiTaRS3.1			AW753078	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000470990		ChiTaRS3.1			AW753078	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-3CDS	ENST00000375300	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000375300	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375300	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375300	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375300	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375300	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000375300	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000292055	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000292055	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000292055	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000292055	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000292055	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000292055	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000292055	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000375288	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000375288	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375288	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375288	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375288	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000375288	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000375288	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000434315	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000434315	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000434315	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000434315	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000434315	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000434315	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000434315	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000542607	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000542607	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000542607	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000542607	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000542607	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000542607	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000542607	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000446921	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000446921	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000446921	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000446921	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000446921	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000446921	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000446921	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000488337	ENST00000375300		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-3CDS	ENST00000488337	ENST00000292055		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000488337	ENST00000375288		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000488337	ENST00000434315		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000488337	ENST00000542607		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-5UTR	ENST00000488337	ENST00000446921		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000488337	ENST00000488337		ChiTaRS3.1			BI050298	SIK3	chr11	116746130	+	SIK3	chr11	116744636	-
intron-intron	ENST00000555917	ENST00000256190		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-intron	ENST00000555917	ENST00000527019		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-intron	ENST00000361956	ENST00000256190		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-intron	ENST00000361956	ENST00000527019		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-intron	ENST00000381280	ENST00000256190		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-intron	ENST00000381280	ENST00000527019		ChiTaRS3.1			AI114538	SMOC1	chr14	70373360	-	SBF2	chr11	10295712	+
intron-3CDS	ENST00000336838	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000336838	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000336838	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000263630	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000263630	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000436346	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000436346	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000413716	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000413716	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000422883	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000422883	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000336838		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000263630		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000436346		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000413716		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000471947	ENST00000422883		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000471947	ENST00000471947		ChiTaRS3.1			AA749038	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000356554	ENST00000360614		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000356554	ENST00000585374		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000356554	ENST00000593119		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000356554	ENST00000540670		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000356554	ENST00000590729		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000356554	ENST00000590511		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000360614		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000585374		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000593119		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000540670		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000590729		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-intron	ENST00000482811	ENST00000590511		ChiTaRS3.1			BU859918	MAN1A2	chr1	117953465	-	LONP1	chr19	5691845	+
intron-5UTR	ENST00000256637	ENST00000326974		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-5UTR	ENST00000256637	ENST00000244670		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-intron	ENST00000256637	ENST00000332245		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-5UTR	ENST00000538502	ENST00000326974		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-5UTR	ENST00000538502	ENST00000244670		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-intron	ENST00000538502	ENST00000332245		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-5UTR	ENST00000482236	ENST00000326974		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-5UTR	ENST00000482236	ENST00000244670		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-intron	ENST00000482236	ENST00000332245		ChiTaRS3.1			X98248	SORT1	chr1	109856101	-	KLHDC3	chr6	42982018	+
intron-3UTR	ENST00000306270	ENST00000306270		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000306270	ENST00000503631		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000306270	ENST00000510291		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-3UTR	ENST00000503631	ENST00000306270		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000503631	ENST00000503631		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000503631	ENST00000510291		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-3UTR	ENST00000510291	ENST00000306270		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000510291	ENST00000503631		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
intron-intron	ENST00000510291	ENST00000510291		ChiTaRS3.1			BE617418	IBTK	chr6	82880616	+	IBTK	chr6	82880526	-
Frame-shit	ENST00000233557	ENST00000233557		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000233557	ENST00000379852		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000233557	ENST00000379863		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379852	ENST00000233557		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379852	ENST00000379852		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379852	ENST00000379863		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379863	ENST00000233557		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379863	ENST00000379852		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
Frame-shit	ENST00000379863	ENST00000379863		ChiTaRS3.1			AA639598	NRBP1	chr2	27662675	-	NRBP1	chr2	27663773	-
intron-intron	ENST00000375400	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375400		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375398		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000355867		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000535393		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000460007		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000538146		ChiTaRS3.1			BG993488	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
5CDS-intron	ENST00000303714	ENST00000341724		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000303714	ENST00000372004		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000303714	ENST00000371998		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000303714	ENST00000371997		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000303714	ENST00000497292		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-intron	ENST00000409829	ENST00000341724		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-intron	ENST00000409829	ENST00000372004		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-intron	ENST00000409829	ENST00000371998		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-intron	ENST00000409829	ENST00000371997		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-intron	ENST00000409829	ENST00000497292		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000409349	ENST00000341724		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000409349	ENST00000372004		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000409349	ENST00000371998		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000409349	ENST00000371997		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
5CDS-intron	ENST00000409349	ENST00000497292		ChiTaRS3.1			BF839348	ANTXR1	chr2	69397409	+	NCOA3	chr20	46219171	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766258	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766258	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3UTR	ENST00000583456	ENST00000258187		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000394282		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000394279		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000566192		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-intron	ENST00000583456	ENST00000568640		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-intron	ENST00000583456	ENST00000563022		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-intron	ENST00000583456	ENST00000569923		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-intron	ENST00000583456	ENST00000356752		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000563799		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000562999		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-3UTR	ENST00000583456	ENST00000570248		ChiTaRS3.1			BQ292358	MIR548AE2	chr16	48308675	-	NDRG4	chr16	58547251	+
intron-intron	ENST00000412145	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000412145	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000412145	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000446349	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000446349	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000446349	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000374541	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000374541	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000374541	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000262539	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000262539	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000262539	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000394827	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000394827	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000394827	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000497739	ENST00000265277		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000497739	ENST00000369452		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000497739	ENST00000489390		ChiTaRS3.1			BF765408	PTPN3	chr9	112166890	+	SHOC2	chr10	112705534	+
intron-intron	ENST00000518527	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000518527	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000377360	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000328939	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000390656	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000520740	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000434108	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000518527		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000377360		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000328939		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000390656		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000520740		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000434108		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-intron	ENST00000411494	ENST00000411494		ChiTaRS3.1			CV314228	KCNIP1	chr5	170033733	+	KCNIP1	chr5	170033637	-
intron-3CDS	ENST00000488834	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000488834	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000488834	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000488834	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000474597	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000474597	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000474597	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000474597	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000244763	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000244763	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000244763	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000244763	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000397511	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000397511	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000397511	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000397511	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000534851	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000534851	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000534851	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000534851	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000489567	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000489567	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000489567	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000489567	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000479365	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000479365	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000479365	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000479365	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000462112	ENST00000393651		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000462112	ENST00000357311		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-3CDS	ENST00000462112	ENST00000489828		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000462112	ENST00000493638		ChiTaRS3.1			AW392218	SSR1	chr6	7288657	+	SRPK2	chr7	104783707	+
intron-intron	ENST00000401827	ENST00000401827		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000401827	ENST00000396642		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000401827	ENST00000379419		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000401827	ENST00000518667		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000396642	ENST00000401827		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000396642	ENST00000396642		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000396642	ENST00000379419		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000396642	ENST00000518667		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000379419	ENST00000401827		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000379419	ENST00000396642		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000379419	ENST00000379419		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000379419	ENST00000518667		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000518667	ENST00000401827		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000518667	ENST00000396642		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000518667	ENST00000379419		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000518667	ENST00000518667		ChiTaRS3.1			BM722198	PDE7A	chr8	66680775	-	PDE7A	chr8	66682565	-
intron-intron	ENST00000462448	ENST00000462448		ChiTaRS3.1			BE151748	STK17A	chr7	43661392	-	STK17A	chr7	43661328	+
intron-intron	ENST00000462448	ENST00000319357		ChiTaRS3.1			BE151748	STK17A	chr7	43661392	-	STK17A	chr7	43661328	+
intron-intron	ENST00000319357	ENST00000462448		ChiTaRS3.1			BE151748	STK17A	chr7	43661392	-	STK17A	chr7	43661328	+
intron-intron	ENST00000319357	ENST00000319357		ChiTaRS3.1			BE151748	STK17A	chr7	43661392	-	STK17A	chr7	43661328	+
intron-5UTR	ENST00000536005	ENST00000584667		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000536005	ENST00000355423		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000536005	ENST00000579864		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000299694	ENST00000584667		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000299694	ENST00000355423		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000299694	ENST00000579864		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000561796	ENST00000584667		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000561796	ENST00000355423		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000561796	ENST00000579864		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000564819	ENST00000584667		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000564819	ENST00000355423		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000564819	ENST00000579864		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000563075	ENST00000584667		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-5UTR	ENST00000563075	ENST00000355423		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000563075	ENST00000579864		ChiTaRS3.1			CD624678	BEAN1	chr16	66526834	-	SAP30BP	chr17	73663419	+
intron-intron	ENST00000491614	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000491614	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000491614	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000491614	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000491614	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378937	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378937	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378937	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378937	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378937	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000537776	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000537776	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000537776	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000537776	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000537776	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378952	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378952	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378952	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378952	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378952	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378940	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378940	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378940	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378940	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378940	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378927	ENST00000549091		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378927	ENST00000293879		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378927	ENST00000547543		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378927	ENST00000547944		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
intron-intron	ENST00000378927	ENST00000315764		ChiTaRS3.1			DA370758	NUDT5	chr10	12214050	-	WDR90	chr16	714964	+
3UTR-5UTR	ENST00000378847	ENST00000378847		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
3UTR-3UTR	ENST00000378847	ENST00000487696		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
3UTR-5UTR	ENST00000378847	ENST00000378845		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-5UTR	ENST00000487696	ENST00000378847		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-3UTR	ENST00000487696	ENST00000487696		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-5UTR	ENST00000487696	ENST00000378845		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-5UTR	ENST00000378845	ENST00000378847		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-3UTR	ENST00000378845	ENST00000487696		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-5UTR	ENST00000378845	ENST00000378845		ChiTaRS3.1			AW182758	CAMK1D	chr10	12870942	+	CAMK1D	chr10	12391809	+
intron-3UTR	ENST00000262189	ENST00000262189		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000262189	ENST00000355193		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000262189	ENST00000485655		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-intron	ENST00000262189	ENST00000485241		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000355193	ENST00000262189		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000355193	ENST00000355193		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000355193	ENST00000485655		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-intron	ENST00000355193	ENST00000485241		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485655	ENST00000262189		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485655	ENST00000355193		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485655	ENST00000485655		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-intron	ENST00000485655	ENST00000485241		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485241	ENST00000262189		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485241	ENST00000355193		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-3UTR	ENST00000485241	ENST00000485655		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-intron	ENST00000485241	ENST00000485241		ChiTaRS3.1			BU678748	KMT2C	chr7	151832478	+	KMT2C	chr7	151832559	-
intron-intron	ENST00000471014	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
intron-intron	ENST00000471014	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
intron-intron	ENST00000471014	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000405570	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000405570	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000405570	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396183	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396183	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396183	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000349496	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000349496	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000349496	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000453024	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000453024	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000453024	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396185	ENST00000294794		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396185	ENST00000367940		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
5CDS-intron	ENST00000396185	ENST00000367938		ChiTaRS3.1			BP232398	CTNNB1	chr3	41266194	+	OLFML2B	chr1	161993659	-
intron-3CDS	ENST00000375499	ENST00000375499		ChiTaRS3.1			N70468	SDHB	chr1	17345412	+	SDHB	chr1	17371329	-
intron-5UTR	ENST00000375499	ENST00000466613		ChiTaRS3.1			N70468	SDHB	chr1	17345412	+	SDHB	chr1	17371329	-
intron-3CDS	ENST00000466613	ENST00000375499		ChiTaRS3.1			N70468	SDHB	chr1	17345412	+	SDHB	chr1	17371329	-
intron-5UTR	ENST00000466613	ENST00000466613		ChiTaRS3.1			N70468	SDHB	chr1	17345412	+	SDHB	chr1	17371329	-
3UTR-intron	ENST00000296786	ENST00000481781		ChiTaRS3.1			N58118	UBLCP1	chr5	158712193	-	INS-IGF2	chr11	2153350	+
3UTR-intron	ENST00000296786	ENST00000397270		ChiTaRS3.1			N58118	UBLCP1	chr5	158712193	-	INS-IGF2	chr11	2153350	+
Frame-shit	ENST00000314616	ENST00000331595		ChiTaRS3.1			BF985568	SUPT6H	chr17	27027444	-	BGN	chrX	152773754	+
5CDS-3UTR	ENST00000314616	ENST00000480756		ChiTaRS3.1			BF985568	SUPT6H	chr17	27027444	-	BGN	chrX	152773754	+
Frame-shit	ENST00000347486	ENST00000331595		ChiTaRS3.1			BF985568	SUPT6H	chr17	27027444	-	BGN	chrX	152773754	+
5CDS-3UTR	ENST00000347486	ENST00000480756		ChiTaRS3.1			BF985568	SUPT6H	chr17	27027444	-	BGN	chrX	152773754	+
3UTR-3CDS	ENST00000320033	ENST00000389682		ChiTaRS3.1			AW163818	ARL4D	chr17	41477958	+	TSN	chr2	122519075	-
3UTR-intron	ENST00000320033	ENST00000498545		ChiTaRS3.1			AW163818	ARL4D	chr17	41477958	+	TSN	chr2	122519075	-
3UTR-intron	ENST00000320033	ENST00000536142		ChiTaRS3.1			AW163818	ARL4D	chr17	41477958	+	TSN	chr2	122519075	-
3UTR-intron	ENST00000320033	ENST00000409193		ChiTaRS3.1			AW163818	ARL4D	chr17	41477958	+	TSN	chr2	122519075	-
intron-3UTR	ENST00000381154	ENST00000381154		ChiTaRS3.1			BF437218	ARSD	chrX	2823042	+	ARSD	chrX	2822301	+
intron-intron	ENST00000381154	ENST00000217890		ChiTaRS3.1			BF437218	ARSD	chrX	2823042	+	ARSD	chrX	2822301	+
intron-3UTR	ENST00000217890	ENST00000381154		ChiTaRS3.1			BF437218	ARSD	chrX	2823042	+	ARSD	chrX	2822301	+
intron-intron	ENST00000217890	ENST00000217890		ChiTaRS3.1			BF437218	ARSD	chrX	2823042	+	ARSD	chrX	2822301	+
intron-intron	ENST00000319359	ENST00000346173		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000319359	ENST00000406846		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000319359	ENST00000304421		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000319359	ENST00000541117		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000319359	ENST00000469138		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000497465	ENST00000346173		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000497465	ENST00000406846		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000497465	ENST00000304421		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000497465	ENST00000541117		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-intron	ENST00000497465	ENST00000469138		ChiTaRS3.1			BE260618	ELL3	chr15	44086241	+	FSHR	chr2	49314249	-
intron-3UTR	ENST00000396299	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396299	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396299	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3UTR	ENST00000357727	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000357727	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000357727	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3UTR	ENST00000396300	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396300	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396300	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3UTR	ENST00000409603	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000409603	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000409603	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3UTR	ENST00000396298	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396298	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000396298	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3UTR	ENST00000482692	ENST00000302764		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000482692	ENST00000517501		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-intron	ENST00000482692	ENST00000519395		ChiTaRS3.1			AA737108	CREB5	chr7	28585247	-	NUDCD2	chr5	162880624	+
intron-3CDS	ENST00000484368	ENST00000545908		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000484368	ENST00000216605		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000484368	ENST00000556284		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3CDS	ENST00000344529	ENST00000545908		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000344529	ENST00000216605		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000344529	ENST00000556284		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3CDS	ENST00000367728	ENST00000545908		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000367728	ENST00000216605		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000367728	ENST00000556284		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3CDS	ENST00000258324	ENST00000545908		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000258324	ENST00000216605		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-3UTR	ENST00000258324	ENST00000556284		ChiTaRS3.1			AW581578	PIGC	chr1	172411063	+	MTHFD1	chr14	64926633	-
intron-intron	ENST00000331110	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000331110	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000331110	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000348120	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000348120	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000348120	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366563	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366563	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366563	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366564	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366564	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366564	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366565	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366565	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366565	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000446183	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000446183	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000446183	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366562	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366562	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000366562	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000401882	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000401882	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000401882	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000407727	ENST00000334315		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000407727	ENST00000378553		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
intron-intron	ENST00000407727	ENST00000563818		ChiTaRS3.1			BG997808	RGS7	chr1	241026235	-	DNAAF1	chr16	84203980	+
3UTR-intron	ENST00000367816	ENST00000367816		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
3UTR-intron	ENST00000367816	ENST00000367815		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
3UTR-intron	ENST00000367816	ENST00000499679		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
3UTR-intron	ENST00000367816	ENST00000367813		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367815	ENST00000367816		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367815	ENST00000367815		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367815	ENST00000499679		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367815	ENST00000367813		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000499679	ENST00000367816		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000499679	ENST00000367815		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000499679	ENST00000499679		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000499679	ENST00000367813		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367813	ENST00000367816		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367813	ENST00000367815		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367813	ENST00000499679		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-intron	ENST00000367813	ENST00000367813		ChiTaRS3.1			BM968498	ATP1B1	chr1	169101892	+	ATP1B1	chr1	169102055	-
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM748668	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
3UTR-5UTR	ENST00000278407	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000278407	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000278407	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000278407	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000278407	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000278407	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000278407	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000278407	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000340687	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000340687	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000340687	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000340687	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000340687	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000340687	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000340687	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000340687	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378323	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378323	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378323	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378323	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378323	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378323	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378323	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378323	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378324	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378324	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378324	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378324	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378324	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378324	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000378324	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000378324	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000403558	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000403558	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000403558	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000403558	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000403558	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000403558	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-intron	ENST00000403558	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
3UTR-5UTR	ENST00000403558	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-5UTR	ENST00000531605	ENST00000352393		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-intron	ENST00000531605	ENST00000317677		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-5UTR	ENST00000531605	ENST00000397445		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-5UTR	ENST00000531605	ENST00000317619		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-intron	ENST00000531605	ENST00000397443		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-intron	ENST00000531605	ENST00000397446		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-intron	ENST00000531605	ENST00000397442		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-5UTR	ENST00000531605	ENST00000475146		ChiTaRS3.1			AA738028	SERPING1	chr11	57382147	-	CPNE1	chr20	34246868	+
intron-intron	ENST00000534894	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000352140		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000594404		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000367376		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000442510		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000348564		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000598951		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000367364		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000413409		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000391970		ChiTaRS3.1			BF910208	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
5CDS-5UTR	ENST00000236957	ENST00000370532		ChiTaRS3.1			DA486448	EEF1B2	chr2	207027239	+	CDR1	chrX	139866568	+
5CDS-5UTR	ENST00000392221	ENST00000370532		ChiTaRS3.1			DA486448	EEF1B2	chr2	207027239	+	CDR1	chrX	139866568	+
5CDS-5UTR	ENST00000392222	ENST00000370532		ChiTaRS3.1			DA486448	EEF1B2	chr2	207027239	+	CDR1	chrX	139866568	+
intron-intron	ENST00000227155	ENST00000586746		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000227155	ENST00000215587		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000227155	ENST00000585838		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000342935	ENST00000586746		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000342935	ENST00000215587		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000342935	ENST00000585838		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000530931	ENST00000586746		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000530931	ENST00000215587		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000530931	ENST00000585838		ChiTaRS3.1			BF898728	CD82	chr11	44628137	-	POLR2E	chr19	1094652	-
intron-intron	ENST00000319449	ENST00000331872		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000319449	ENST00000417584		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000319449	ENST00000311223		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-5UTR	ENST00000319449	ENST00000491322		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000319449	ENST00000339526		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000377001	ENST00000331872		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000377001	ENST00000417584		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000377001	ENST00000311223		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-5UTR	ENST00000377001	ENST00000491322		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000377001	ENST00000339526		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000437570	ENST00000331872		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000437570	ENST00000417584		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000437570	ENST00000311223		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-5UTR	ENST00000437570	ENST00000491322		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000437570	ENST00000339526		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000393438	ENST00000331872		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000393438	ENST00000417584		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000393438	ENST00000311223		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-5UTR	ENST00000393438	ENST00000491322		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000393438	ENST00000339526		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000508797	ENST00000331872		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000508797	ENST00000417584		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000508797	ENST00000311223		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-5UTR	ENST00000508797	ENST00000491322		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-intron	ENST00000508797	ENST00000339526		ChiTaRS3.1			BF932728	RUFY1	chr5	178993345	+	GLUL	chr1	182359169	-
intron-3UTR	ENST00000536163	ENST00000536163		ChiTaRS3.1			AA225538	KIAA1147	chr7	141361410	-	KIAA1147	chr7	141361501	+
intron-intron	ENST00000536163	ENST00000482493		ChiTaRS3.1			AA225538	KIAA1147	chr7	141361410	-	KIAA1147	chr7	141361501	+
intron-3UTR	ENST00000482493	ENST00000536163		ChiTaRS3.1			AA225538	KIAA1147	chr7	141361410	-	KIAA1147	chr7	141361501	+
intron-intron	ENST00000482493	ENST00000482493		ChiTaRS3.1			AA225538	KIAA1147	chr7	141361410	-	KIAA1147	chr7	141361501	+
intron-intron	ENST00000337147	ENST00000422945		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000556068		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000554442		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000328724		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000350249		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000445439		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000334743		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000557095		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000556260		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000556946		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000337147	ENST00000557714		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000422945		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000556068		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000554442		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000328724		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000350249		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000445439		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000334743		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000557095		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000556260		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000556946		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000367075	ENST00000557714		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000422945		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000556068		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000554442		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000328724		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000350249		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000445439		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000334743		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000557095		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000556260		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000556946		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000392177	ENST00000557714		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000422945		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000556068		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000554442		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000328724		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000350249		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000445439		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000334743		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000557095		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000556260		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000556946		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-intron	ENST00000476189	ENST00000557714		ChiTaRS3.1			CR747188	EZR	chr6	159215297	-	PPP2R5C	chr14	102360043	+
intron-5UTR	ENST00000295974	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000513140	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000508593	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000506352	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000511572	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000543538	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000502841	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-5UTR	ENST00000504305	ENST00000256442		ChiTaRS3.1			BC018868	APBB2	chr4	40816464	+	CCNB1	chr5	68462964	+
intron-3CDS	ENST00000265348	ENST00000265348		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000265348	ENST00000535468		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000265348	ENST00000478630		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000535468	ENST00000265348		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000535468	ENST00000535468		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000535468	ENST00000478630		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000478630	ENST00000265348		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000478630	ENST00000535468		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000478630	ENST00000478630		ChiTaRS3.1			BI053718	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000393701	ENST00000393701		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000393701	ENST00000568461		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000393701	ENST00000288040		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000393701	ENST00000449317		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000568461	ENST00000393701		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000568461	ENST00000568461		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000568461	ENST00000288040		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000568461	ENST00000449317		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000288040	ENST00000393701		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000288040	ENST00000568461		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000288040	ENST00000288040		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000288040	ENST00000449317		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000449317	ENST00000393701		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000449317	ENST00000568461		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000449317	ENST00000288040		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
intron-intron	ENST00000449317	ENST00000449317		ChiTaRS3.1			W22578	CLEC18A	chr16	70192544	-	CLEC18A	chr16	70193406	+
5UTR-5UTR	ENST00000325083	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000325083	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-5UTR	ENST00000519253	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000519253	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-5UTR	ENST00000524226	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000524226	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-5UTR	ENST00000518537	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
5UTR-intron	ENST00000518537	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-5UTR	ENST00000518936	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
3UTR-intron	ENST00000518936	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-5UTR	ENST00000327578	ENST00000398056		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000522444		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000398054		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000381840		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000381841		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000427924		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-intron	ENST00000327578	ENST00000518650		ChiTaRS3.1			BM914108	PCM1	chr8	17780697	+	FGL1	chr8	17753927	-
intron-3CDS	ENST00000381298	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381298	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381298	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381298	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381298	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381298	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000336909	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000336909	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000336909	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000336909	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000336909	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381287	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381287	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381287	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381287	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381287	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000502326	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000502326	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000502326	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000502326	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000502326	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381294	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381294	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381294	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381294	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381294	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000536319	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000536319	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000536319	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000536319	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000536319	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381293	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381293	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381293	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381293	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381293	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000381286	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381286	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381286	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381286	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000381286	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000522633	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000522633	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000522633	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000522633	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000522633	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000396816	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000396816	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000396816	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000396816	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000396816	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000381298		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000336909		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000381287		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000502326		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000381294		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000536319		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3CDS	ENST00000577363	ENST00000381293		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000577363	ENST00000381286		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000577363	ENST00000522633		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000577363	ENST00000396816		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-intron	ENST00000577363	ENST00000577363		ChiTaRS3.1			W74058	IL6ST	chr5	55259997	+	IL6ST	chr5	55259334	-
intron-3UTR	ENST00000295802	ENST00000374975		ChiTaRS3.1			CA312858	RETSAT	chr2	85569333	+	HLA-DRB5	chr6	32485343	-
intron-3UTR	ENST00000263854	ENST00000374975		ChiTaRS3.1			CA312858	RETSAT	chr2	85569333	+	HLA-DRB5	chr6	32485343	-
intron-3UTR	ENST00000457495	ENST00000374975		ChiTaRS3.1			CA312858	RETSAT	chr2	85569333	+	HLA-DRB5	chr6	32485343	-
intron-3UTR	ENST00000475624	ENST00000374975		ChiTaRS3.1			CA312858	RETSAT	chr2	85569333	+	HLA-DRB5	chr6	32485343	-
intron-3CDS	ENST00000513000	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000513000	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000509777	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000509777	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000262992	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000262992	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000308502	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000308502	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000508116	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508116	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000507861	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000507861	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000506217	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000506217	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3CDS	ENST00000508084	ENST00000544564		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000541571		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000535424		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000378799		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000538565		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000606369		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000329908		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000538850		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-intron	ENST00000508084	ENST00000378798		ChiTaRS3.1			AK057258	INPP4B	chr4	143687891	-	IST1	chr16	71924472	+
intron-3UTR	ENST00000487694	ENST00000374282		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000487694	ENST00000374284		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-intron	ENST00000487694	ENST00000493892		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000461745	ENST00000374282		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000461745	ENST00000374284		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-intron	ENST00000461745	ENST00000493892		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000332191	ENST00000374282		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000332191	ENST00000374284		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-intron	ENST00000332191	ENST00000493892		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000469233	ENST00000374282		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000469233	ENST00000374284		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-intron	ENST00000469233	ENST00000493892		ChiTaRS3.1			AW449898	ROBO2	chr3	76950589	+	PAFAH2	chr1	26287619	+
intron-3UTR	ENST00000260630	ENST00000260630		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000260630	ENST00000494864		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000260630	ENST00000407341		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-3UTR	ENST00000494864	ENST00000260630		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000494864	ENST00000494864		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000494864	ENST00000407341		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-3UTR	ENST00000407341	ENST00000260630		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000407341	ENST00000494864		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000407341	ENST00000407341		ChiTaRS3.1			CB243208	CYP1B1	chr2	38295516	+	CYP1B1	chr2	38295540	-
intron-intron	ENST00000486975	ENST00000278618		ChiTaRS3.1			DA211258	CLDN11	chr3	170232821	+	AASDHPPT	chr11	105955609	+
intron-intron	ENST00000451576	ENST00000278618		ChiTaRS3.1			DA211258	CLDN11	chr3	170232821	+	AASDHPPT	chr11	105955609	+
intron-intron	ENST00000064724	ENST00000278618		ChiTaRS3.1			DA211258	CLDN11	chr3	170232821	+	AASDHPPT	chr11	105955609	+
intron-intron	ENST00000489485	ENST00000278618		ChiTaRS3.1			DA211258	CLDN11	chr3	170232821	+	AASDHPPT	chr11	105955609	+
intron-intron	ENST00000261396	ENST00000396153		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000261396	ENST00000371778		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000261396	ENST00000545823		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000261396	ENST00000472808		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000537506	ENST00000396153		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000537506	ENST00000371778		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000537506	ENST00000545823		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000537506	ENST00000472808		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000366678	ENST00000396153		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000366678	ENST00000371778		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000366678	ENST00000545823		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000366678	ENST00000472808		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000485119	ENST00000396153		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000485119	ENST00000371778		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000485119	ENST00000545823		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000485119	ENST00000472808		ChiTaRS3.1			AW895718	NUP133	chr1	229593017	+	FAF1	chr1	51407526	-
intron-intron	ENST00000273038	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000273038	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000273038	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000273038	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000430365	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000430365	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000430365	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000430365	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000404339	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000404339	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000404339	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000404339	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000480288	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000480288	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000480288	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000480288	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000413604	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000413604	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000413604	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000413604	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000451674	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000451674	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000451674	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000451674	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000424529	ENST00000446450		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000424529	ENST00000354956		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3UTR	ENST00000424529	ENST00000354449		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-intron	ENST00000424529	ENST00000469654		ChiTaRS3.1			AI005008	VGLL4	chr3	11685105	+	ATG7	chr3	11598739	+
intron-3CDS	ENST00000367214	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000367214	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367214	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367214	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000367212	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000367212	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367212	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367212	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000332127	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000332127	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000332127	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000332127	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000545588	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000545588	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000545588	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000545588	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000367210	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000367210	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367210	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000367210	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000466470	ENST00000464451		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000466470	ENST00000243253		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000466470	ENST00000424880		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-intron	ENST00000466470	ENST00000483956		ChiTaRS3.1			DA580258	ZC3H11A	chr1	203764930	+	SEC61A1	chr3	127775637	+
intron-3CDS	ENST00000460934	ENST00000306376		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
intron-3CDS	ENST00000460934	ENST00000434744		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
intron-3CDS	ENST00000460934	ENST00000537818		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
intron-intron	ENST00000460934	ENST00000480706		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
5UTR-3CDS	ENST00000367145	ENST00000306376		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
5UTR-3CDS	ENST00000367145	ENST00000434744		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
5UTR-3CDS	ENST00000367145	ENST00000537818		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
5UTR-intron	ENST00000367145	ENST00000480706		ChiTaRS3.1			EU314932	SLC45A3	chr1	205649522	-	ETV5	chr3	185783864	-
intron-3CDS	ENST00000413953	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000347140	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000358907	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000402412	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000441731	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000403821	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-3CDS	ENST00000546843	ENST00000331825		ChiTaRS3.1			AF090928	R3HDM2	chr12	57810707	+	FTL	chr19	49468818	+
intron-intron	ENST00000606080	ENST00000369252		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000533213		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000277895		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000369266		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000392952		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000369253		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000606080	ENST00000477638		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000369252		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000533213		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000277895		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000369266		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000392952		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000369253		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000538210	ENST00000477638		ChiTaRS3.1			AI909678	FRK	chr6	116279537	+	ABLIM1	chr10	116380420	+
intron-intron	ENST00000314571	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000314571	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000383797	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000454502	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000402228	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000444864	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000284995	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000415684	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000314571		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000383797		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000454502		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000402228		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000444864		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000284995		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000415684		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
intron-intron	ENST00000475595	ENST00000475595		ChiTaRS3.1			CV398848	TSEN2	chr3	12549123	-	TSEN2	chr3	12565281	+
3UTR-3UTR	ENST00000263228	ENST00000263228		ChiTaRS3.1			AA639068	UBE2R2	chr9	33920301	+	UBE2R2	chr9	33920392	-
5CDS-intron	ENST00000253110	ENST00000253110		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000253110	ENST00000591813		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000253110	ENST00000397881		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000253110		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000591813		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000591813	ENST00000397881		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000253110		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000591813		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
5CDS-intron	ENST00000397881	ENST00000397881		ChiTaRS3.1			AK001098	C19orf66	chr19	10200723	+	C19orf66	chr19	10196798	+
intron-5UTR	ENST00000418388	ENST00000418388		ChiTaRS3.1			AW008528	C9orf69	chr9	139010670	+	C9orf69	chr9	139008778	-
intron-5UTR	ENST00000418388	ENST00000561457		ChiTaRS3.1			AW008528	C9orf69	chr9	139010670	+	C9orf69	chr9	139008778	-
intron-5UTR	ENST00000561457	ENST00000418388		ChiTaRS3.1			AW008528	C9orf69	chr9	139010670	+	C9orf69	chr9	139008778	-
intron-5UTR	ENST00000561457	ENST00000561457		ChiTaRS3.1			AW008528	C9orf69	chr9	139010670	+	C9orf69	chr9	139008778	-
intron-intron	ENST00000375856	ENST00000375856		ChiTaRS3.1			AA479318	IRS2	chr13	110417464	-	IRS2	chr13	110433933	-
intron-intron	ENST00000343289	ENST00000343289		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000343289	ENST00000404739		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000343289	ENST00000369857		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000343289	ENST00000423468		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000343289	ENST00000470299		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000404739	ENST00000343289		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000404739	ENST00000404739		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000404739	ENST00000369857		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000404739	ENST00000423468		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000404739	ENST00000470299		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000369857	ENST00000343289		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000369857	ENST00000404739		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000369857	ENST00000369857		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000369857	ENST00000423468		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000369857	ENST00000470299		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000423468	ENST00000343289		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000423468	ENST00000404739		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000423468	ENST00000369857		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000423468	ENST00000423468		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000423468	ENST00000470299		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000470299	ENST00000343289		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000470299	ENST00000404739		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000470299	ENST00000369857		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000470299	ENST00000423468		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-intron	ENST00000470299	ENST00000470299		ChiTaRS3.1			BE178418	NT5C2	chr10	104879765	+	NT5C2	chr10	104878246	+
intron-5UTR	ENST00000397887	ENST00000417689		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397887	ENST00000317091		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000330938	ENST00000417689		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000330938	ENST00000317091		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000445724	ENST00000417689		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000445724	ENST00000317091		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397886	ENST00000417689		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000397886	ENST00000317091		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000494690	ENST00000417689		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-5UTR	ENST00000494690	ENST00000317091		ChiTaRS3.1			AW955878	PTTG1IP	chr21	46270259	+	CES2	chr16	66968737	+
intron-3CDS	ENST00000360655	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000360655	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000360655	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396085	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000349880	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000396087	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000527559	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000540292	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000533917	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000311043	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000209875		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000439541		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
intron-3CDS	ENST00000534229	ENST00000550411		ChiTaRS3.1			BE083118	NAV2	chr11	19771715	+	CBX5	chr12	54645915	+
In-frame	ENST00000323851	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
In-frame	ENST00000323851	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000323851	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
In-frame	ENST00000354944	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000354944	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000521414	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000521414	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-3CDS	ENST00000537882	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5UTR-intron	ENST00000537882	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
Frame-shit	ENST00000414097	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
5CDS-intron	ENST00000414097	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518176	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518176	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000522476	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000522476	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398907		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000398905		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-3CDS	ENST00000518066	ENST00000288319		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398897		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398911		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398910		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000417133		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000442448		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000453032		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000398919		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000429727		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000518066	ENST00000485493		ChiTaRS3.1			FJ627786	NDRG1	chr8	134292474	-	ERG	chr21	39817547	-
intron-intron	ENST00000396373	ENST00000396373		ChiTaRS3.1			CB045308	ETV6	chr12	12027799	-	ETV6	chr12	12031268	-
intron-intron	ENST00000396373	ENST00000544715		ChiTaRS3.1			CB045308	ETV6	chr12	12027799	-	ETV6	chr12	12031268	-
intron-intron	ENST00000544715	ENST00000396373		ChiTaRS3.1			CB045308	ETV6	chr12	12027799	-	ETV6	chr12	12031268	-
intron-intron	ENST00000544715	ENST00000544715		ChiTaRS3.1			CB045308	ETV6	chr12	12027799	-	ETV6	chr12	12031268	-
intron-intron	ENST00000544798	ENST00000544798		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000544798	ENST00000238156		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000544798	ENST00000545135		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000544798	ENST00000545891		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-intron	ENST00000238156	ENST00000544798		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000238156	ENST00000238156		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000238156	ENST00000545135		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000238156	ENST00000545891		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-intron	ENST00000545135	ENST00000544798		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545135	ENST00000238156		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545135	ENST00000545135		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545135	ENST00000545891		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-intron	ENST00000545891	ENST00000544798		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545891	ENST00000238156		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545891	ENST00000545135		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-3UTR	ENST00000545891	ENST00000545891		ChiTaRS3.1			AW516698	CCDC92	chr12	124421308	+	CCDC92	chr12	124421094	-
intron-intron	ENST00000298048	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000298048	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000538311	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000538311	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536987	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536987	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536860	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536860	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000545008	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000545008	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536329	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000536329	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000541717	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000541717	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000543751	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000543751	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000487398	ENST00000337288		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
intron-intron	ENST00000487398	ENST00000462501		ChiTaRS3.1			AW850188	MELK	chr9	36637484	-	STARD7	chr2	96858044	-
In-frame	ENST00000237530	ENST00000237530		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
In-frame	ENST00000237530	ENST00000373622		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
5CDS-intron	ENST00000237530	ENST00000470352		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
In-frame	ENST00000373622	ENST00000237530		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
In-frame	ENST00000373622	ENST00000373622		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
5CDS-intron	ENST00000373622	ENST00000470352		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
intron-3CDS	ENST00000470352	ENST00000237530		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
intron-3CDS	ENST00000470352	ENST00000373622		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
intron-intron	ENST00000470352	ENST00000470352		ChiTaRS3.1			BG390108	RPN2	chr20	35857081	-	RPN2	chr20	35857114	+
intron-3UTR	ENST00000216190	ENST00000532097		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000216190	ENST00000431206		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000216190	ENST00000352303		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000216190	ENST00000532025		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000478547	ENST00000532097		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000478547	ENST00000431206		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000478547	ENST00000352303		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000478547	ENST00000532025		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000541106	ENST00000532097		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000541106	ENST00000431206		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000541106	ENST00000352303		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000541106	ENST00000532025		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000405442	ENST00000532097		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000405442	ENST00000431206		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000405442	ENST00000352303		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3UTR	ENST00000405442	ENST00000532025		ChiTaRS3.1			BF768948	EIF3D	chr22	36916733	+	PSMD13	chr11	252820	+
intron-3CDS	ENST00000564353	ENST00000399277		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
intron-5UTR	ENST00000564353	ENST00000399280		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
intron-3UTR	ENST00000564353	ENST00000486655		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
intron-3UTR	ENST00000564353	ENST00000472495		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
In-frame	ENST00000345005	ENST00000399277		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-5UTR	ENST00000345005	ENST00000399280		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000345005	ENST00000486655		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000345005	ENST00000472495		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
In-frame	ENST00000395066	ENST00000399277		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-5UTR	ENST00000395066	ENST00000399280		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000395066	ENST00000486655		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000395066	ENST00000472495		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
3UTR-3CDS	ENST00000348245	ENST00000399277		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
3UTR-5UTR	ENST00000348245	ENST00000399280		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
3UTR-3UTR	ENST00000348245	ENST00000486655		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
3UTR-3UTR	ENST00000348245	ENST00000472495		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
In-frame	ENST00000352989	ENST00000399277		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-5UTR	ENST00000352989	ENST00000399280		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000352989	ENST00000486655		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
5CDS-3UTR	ENST00000352989	ENST00000472495		ChiTaRS3.1			BI859068	CLK3	chr15	74917357	+	ZSWIM7	chr17	15881382	-
intron-3CDS	ENST00000272203	ENST00000272203		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-3CDS	ENST00000272203	ENST00000414478		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-intron	ENST00000272203	ENST00000485632		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-3CDS	ENST00000414478	ENST00000272203		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-3CDS	ENST00000414478	ENST00000414478		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-intron	ENST00000414478	ENST00000485632		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-3CDS	ENST00000485632	ENST00000272203		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-3CDS	ENST00000485632	ENST00000414478		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-intron	ENST00000485632	ENST00000485632		ChiTaRS3.1			BG007438	PLEKHA6	chr1	204231229	+	PLEKHA6	chr1	204228695	-
intron-intron	ENST00000404771	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404771	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372440	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000372443	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286628	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000286627	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000354353	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000404857	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000406533	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000484507	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000481070	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000357248		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000349721		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000382203		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000382194		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000491574		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000324954		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000302401		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000382186		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
intron-intron	ENST00000480683	ENST00000382185		ChiTaRS3.1			BE772448	KCNMA1	chr10	78646615	+	SMARCA2	chr9	2051132	+
Frame-shit	ENST00000221855	ENST00000320474		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000221855	ENST00000392779		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000221855	ENST00000392780		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000221855	ENST00000392781		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000221855	ENST00000473285		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000221855	ENST00000417187		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000221855	ENST00000488170		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
5CDS-intron	ENST00000221855	ENST00000494818		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000320474		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000392779		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000392780		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000392781		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000473285		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000417187		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3CDS	ENST00000392178	ENST00000488170		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-intron	ENST00000392178	ENST00000494818		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000589996	ENST00000320474		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000589996	ENST00000392779		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000589996	ENST00000392780		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000589996	ENST00000392781		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000589996	ENST00000473285		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000589996	ENST00000417187		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000589996	ENST00000488170		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
5CDS-intron	ENST00000589996	ENST00000494818		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000585746	ENST00000320474		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000585746	ENST00000392779		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000585746	ENST00000392780		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000585746	ENST00000392781		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000585746	ENST00000473285		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
Frame-shit	ENST00000585746	ENST00000417187		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
In-frame	ENST00000585746	ENST00000488170		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
5CDS-intron	ENST00000585746	ENST00000494818		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000320474		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000392779		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000392780		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000392781		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000473285		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000417187		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-3CDS	ENST00000586868	ENST00000488170		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
intron-intron	ENST00000586868	ENST00000494818		ChiTaRS3.1			DA235308	TBCB	chr19	36611637	+	B3GALNT1	chr3	160804539	-
3UTR-3UTR	ENST00000229264	ENST00000229264		ChiTaRS3.1			BU734248	GNB3	chr12	6956276	-	GNB3	chr12	6956204	+
3UTR-intron	ENST00000229264	ENST00000435982		ChiTaRS3.1			BU734248	GNB3	chr12	6956276	-	GNB3	chr12	6956204	+
intron-3UTR	ENST00000435982	ENST00000229264		ChiTaRS3.1			BU734248	GNB3	chr12	6956276	-	GNB3	chr12	6956204	+
intron-intron	ENST00000435982	ENST00000435982		ChiTaRS3.1			BU734248	GNB3	chr12	6956276	-	GNB3	chr12	6956204	+
intron-intron	ENST00000344034	ENST00000343882		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-intron	ENST00000344034	ENST00000406360		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-intron	ENST00000344034	ENST00000540898		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-intron	ENST00000350803	ENST00000343882		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-intron	ENST00000350803	ENST00000406360		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-intron	ENST00000350803	ENST00000540898		ChiTaRS3.1			BE149668	PPM1G	chr2	27604640	+	FOXO3	chr6	108915984	+
intron-3CDS	ENST00000480687	ENST00000480687		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000480687	ENST00000308375		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000480687	ENST00000308388		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308375	ENST00000480687		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308375	ENST00000308375		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308375	ENST00000308388		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308388	ENST00000480687		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308388	ENST00000308375		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
intron-3CDS	ENST00000308388	ENST00000308388		ChiTaRS3.1			BE838598	GMPPB	chr3	49759529	-	GMPPB	chr3	49759441	+
Frame-shit	ENST00000279036	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000279036	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
Frame-shit	ENST00000279035	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000279035	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
intron-3CDS	ENST00000372689	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
intron-intron	ENST00000372689	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
Frame-shit	ENST00000545755	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000545755	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
Frame-shit	ENST00000535404	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000535404	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
Frame-shit	ENST00000341555	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000341555	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
Frame-shit	ENST00000543458	ENST00000261726		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
5CDS-intron	ENST00000543458	ENST00000551604		ChiTaRS3.1			BE773038	PIGT	chr20	44050147	-	CUX2	chr12	111744901	+
intron-3CDS	ENST00000295974	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000513140	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000508593	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000506352	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000511572	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000543538	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000502841	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-3CDS	ENST00000504305	ENST00000390237		ChiTaRS3.1			BE012048	APBB2	chr4	41002936	-	IGKC	chr2	89157134	+
intron-intron	ENST00000356462	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000356462	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000356462	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000356462	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000356462	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000400345	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000400345	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000400345	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000400345	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000589054	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000589054	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000589054	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000589054	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000256832	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000256832	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000256832	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000256832	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000382850	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000382850	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000382850	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000382850	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000256830	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000256830	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000256830	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000256830	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000588516	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000588516	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000588516	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000588516	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000456986	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000456986	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-3UTR	ENST00000456986	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
3UTR-intron	ENST00000456986	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000435432	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000435432	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000435432	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000435432	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000357895	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000357895	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000357895	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000357895	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000586263	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000586263	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000586263	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000586263	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000456173	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000456173	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000456173	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000456173	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000356462		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000400345		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000589054		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000431212	ENST00000256832		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000431212	ENST00000382850		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000256830		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000588516		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-3UTR	ENST00000431212	ENST00000456986		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000435432		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000357895		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000586263		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000456173		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000431212	ENST00000431212		ChiTaRS3.1			AL121228	NEDD4L	chr18	56067806	-	NEDD4L	chr18	56067902	+
intron-intron	ENST00000450943	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000450943	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000354888	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000354888	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393108	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393108	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393110	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393110	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393106	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393106	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393107	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000393107	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000409811	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000409811	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000425223	ENST00000394485		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-intron	ENST00000425223	ENST00000562939		ChiTaRS3.1			AV649288	STEAP3	chr2	119994370	+	MT1X	chr16	56717848	+
intron-5UTR	ENST00000470422	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000470422	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000470422	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000470422	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000470422	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000470422	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000246043	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377813	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000377807	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000360807	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000470422		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000246043		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000377813		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000377807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000360807		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-5UTR	ENST00000455029	ENST00000455029		ChiTaRS3.1			CB048558	RRBP1	chr20	17641036	+	RRBP1	chr20	17596132	+
intron-intron	ENST00000297071	ENST00000297071		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000297071	ENST00000392502		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000297071	ENST00000538367		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000297071	ENST00000474586		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000392502	ENST00000297071		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000392502	ENST00000392502		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000392502	ENST00000538367		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000392502	ENST00000474586		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000538367	ENST00000297071		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000538367	ENST00000392502		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000538367	ENST00000538367		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000538367	ENST00000474586		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000474586	ENST00000297071		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000474586	ENST00000392502		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000474586	ENST00000538367		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
intron-intron	ENST00000474586	ENST00000474586		ChiTaRS3.1			AW936418	TRA2A	chr7	23554430	-	TRA2A	chr7	23567534	-
3UTR-3UTR	ENST00000356124	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000356124	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000356124	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000356124	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000356124	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000356124	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000356124	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000266971	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000266971	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000266971	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000266971	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000266971	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000266971	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000266971	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394115	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394115	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394115	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394115	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000394115	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000394115	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394115	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000548274	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000548274	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000548274	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000548274	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000548274	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000548274	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000548274	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000550478	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000550478	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000550478	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000550478	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-intron	ENST00000550478	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-intron	ENST00000550478	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000550478	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000551841	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000551841	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000551841	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000551841	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-intron	ENST00000551841	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-intron	ENST00000551841	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3UTR	ENST00000551841	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394109	ENST00000356124		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394109	ENST00000266971		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394109	ENST00000394115		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394109	ENST00000548274		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000394109	ENST00000550478		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-intron	ENST00000394109	ENST00000551841		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
3UTR-3UTR	ENST00000394109	ENST00000394109		ChiTaRS3.1			BF196408	SUOX	chr12	56399028	-	SUOX	chr12	56398944	+
intron-3CDS	ENST00000226004	ENST00000372862		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000226004	ENST00000372858		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000226004	ENST00000372857		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000226004	ENST00000372856		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-intron	ENST00000226004	ENST00000529216		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000397937	ENST00000372862		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000397937	ENST00000372858		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000397937	ENST00000372857		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000397937	ENST00000372856		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-intron	ENST00000397937	ENST00000529216		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000591618	ENST00000372862		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000591618	ENST00000372858		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000591618	ENST00000372857		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000591618	ENST00000372856		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-intron	ENST00000591618	ENST00000529216		ChiTaRS3.1			BE818228	DUSP3	chr17	41846747	+	PABPC4	chr1	40038095	+
intron-3CDS	ENST00000394945	ENST00000371217		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000394945	ENST00000265993		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000394945	ENST00000430368		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-intron	ENST00000394945	ENST00000371209		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000282223	ENST00000371217		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000282223	ENST00000265993		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000282223	ENST00000430368		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-intron	ENST00000282223	ENST00000371209		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000509978	ENST00000371217		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000509978	ENST00000265993		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3CDS	ENST00000509978	ENST00000430368		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-intron	ENST00000509978	ENST00000371209		ChiTaRS3.1			BF088878	SPOCK1	chr5	136452649	+	TCTN3	chr10	97423935	-
intron-3UTR	ENST00000269576	ENST00000269576		ChiTaRS3.1			BM967028	KRT10	chr17	38974467	+	KRT10	chr17	38974430	-
5CDS-intron	ENST00000375437	ENST00000368009		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375437	ENST00000368007		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375437	ENST00000392190		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375437	ENST00000368008		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375437	ENST00000496861		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000357398	ENST00000368009		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000357398	ENST00000368007		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000357398	ENST00000392190		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000357398	ENST00000368008		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000357398	ENST00000496861		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000283256	ENST00000368009		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000283256	ENST00000368007		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000283256	ENST00000392190		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000283256	ENST00000368008		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000283256	ENST00000496861		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375427	ENST00000368009		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375427	ENST00000368007		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375427	ENST00000392190		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375427	ENST00000368008		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
5CDS-intron	ENST00000375427	ENST00000496861		ChiTaRS3.1			CB110238	SCN2A	chr2	166237119	-	NIT1	chr1	161091883	-
intron-3CDS	ENST00000526148	ENST00000526148		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000526148	ENST00000525681		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000526148	ENST00000339995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000526148	ENST00000396525		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525681	ENST00000526148		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525681	ENST00000525681		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525681	ENST00000339995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525681	ENST00000396525		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000339995	ENST00000526148		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000339995	ENST00000525681		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000339995	ENST00000339995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000339995	ENST00000396525		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000396525	ENST00000526148		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000396525	ENST00000525681		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000396525	ENST00000339995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000396525	ENST00000396525		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525995	ENST00000526148		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525995	ENST00000525681		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525995	ENST00000339995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-3CDS	ENST00000525995	ENST00000396525		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			BU187908	EIF4G2	chr11	10820972	+	EIF4G2	chr11	10820888	-
intron-intron	ENST00000515518	ENST00000382668		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000515518	ENST00000382666		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-3UTR	ENST00000515518	ENST00000427358		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000429839	ENST00000382668		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000429839	ENST00000382666		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-3UTR	ENST00000429839	ENST00000427358		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000455884	ENST00000382668		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000455884	ENST00000382666		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-3UTR	ENST00000455884	ENST00000427358		ChiTaRS3.1			BF750058	TMEM232	chr5	110036336	+	FAHD1	chr16	1878381	+
intron-intron	ENST00000389413	ENST00000389413		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389413	ENST00000409483		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389413	ENST00000389416		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389413	ENST00000389418		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389413	ENST00000404321		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000409483	ENST00000389413		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000409483	ENST00000409483		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000409483	ENST00000389416		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000409483	ENST00000389418		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000409483	ENST00000404321		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389416	ENST00000389413		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389416	ENST00000409483		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389416	ENST00000389416		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389416	ENST00000389418		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389416	ENST00000404321		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389418	ENST00000389413		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389418	ENST00000409483		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389418	ENST00000389416		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389418	ENST00000389418		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000389418	ENST00000404321		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000404321	ENST00000389413		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000404321	ENST00000409483		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000404321	ENST00000389416		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000404321	ENST00000389418		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-intron	ENST00000404321	ENST00000404321		ChiTaRS3.1			AW813528	PTPRN2	chr7	157360292	-	PTPRN2	chr7	157360043	+
intron-3CDS	ENST00000370440	ENST00000370440		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000370440	ENST00000347275		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000370440	ENST00000337393		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000370440	ENST00000361321		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000370440	ENST00000467231		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-3CDS	ENST00000347275	ENST00000370440		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000347275	ENST00000347275		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000347275	ENST00000337393		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000347275	ENST00000361321		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000347275	ENST00000467231		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-3CDS	ENST00000337393	ENST00000370440		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000337393	ENST00000347275		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000337393	ENST00000337393		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000337393	ENST00000361321		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000337393	ENST00000467231		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-3CDS	ENST00000361321	ENST00000370440		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000361321	ENST00000347275		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000361321	ENST00000337393		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000361321	ENST00000361321		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000361321	ENST00000467231		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-3CDS	ENST00000467231	ENST00000370440		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000467231	ENST00000347275		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000467231	ENST00000337393		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000467231	ENST00000361321		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-intron	ENST00000467231	ENST00000467231		ChiTaRS3.1			BX955248	ZNF644	chr1	91405481	+	ZNF644	chr1	91405692	-
intron-3UTR	ENST00000368985	ENST00000368985		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-3UTR	ENST00000368985	ENST00000448301		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-intron	ENST00000368985	ENST00000480760		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-3UTR	ENST00000448301	ENST00000368985		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-3UTR	ENST00000448301	ENST00000448301		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-intron	ENST00000448301	ENST00000480760		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-3UTR	ENST00000480760	ENST00000368985		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-3UTR	ENST00000480760	ENST00000448301		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-intron	ENST00000480760	ENST00000480760		ChiTaRS3.1			BF891448	CTSS	chr1	150705612	+	CTSS	chr1	150705282	-
intron-intron	ENST00000413465	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000413465	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000413465	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000359597	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000359597	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000359597	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000269305	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000269305	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000269305	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000455263	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000455263	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000455263	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000420246	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000420246	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000420246	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000445888	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000445888	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000445888	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000574684	ENST00000396556		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000574684	ENST00000438237		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
intron-intron	ENST00000574684	ENST00000467647		ChiTaRS3.1			AA947588	TP53	chr17	7573268	+	OSBPL10	chr3	31964262	+
3UTR-intron	ENST00000395996	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-3UTR	ENST00000395996	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-intron	ENST00000395996	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-intron	ENST00000358544	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-3UTR	ENST00000358544	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-intron	ENST00000358544	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-intron	ENST00000357162	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-3UTR	ENST00000357162	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-intron	ENST00000357162	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000355155	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-3UTR	ENST00000355155	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000355155	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000441350	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-3UTR	ENST00000441350	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000441350	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000521932	ENST00000284116		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-3UTR	ENST00000521932	ENST00000581140		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
intron-intron	ENST00000521932	ENST00000581276		ChiTaRS3.1			BU608568	VPS13B	chr8	100889732	-	GDPD1	chr17	57352608	+
3UTR-3UTR	ENST00000262134	ENST00000262134		ChiTaRS3.1			AA602968	LPCAT2	chr16	55620127	+	LPCAT2	chr16	55620032	-
3UTR-intron	ENST00000262134	ENST00000565056		ChiTaRS3.1			AA602968	LPCAT2	chr16	55620127	+	LPCAT2	chr16	55620032	-
intron-3UTR	ENST00000565056	ENST00000262134		ChiTaRS3.1			AA602968	LPCAT2	chr16	55620127	+	LPCAT2	chr16	55620032	-
intron-intron	ENST00000565056	ENST00000565056		ChiTaRS3.1			AA602968	LPCAT2	chr16	55620127	+	LPCAT2	chr16	55620032	-
intron-3UTR	ENST00000540687	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000566220	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
3UTR-3UTR	ENST00000519077	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000521091	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000569149	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000563812	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000602393	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000602971	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
intron-3UTR	ENST00000569384	ENST00000325881		ChiTaRS3.1			AI110588	TUG1	chr22	31373539	-	SNX22	chr15	64448224	-
In-frame	ENST00000550735	ENST00000550735		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
In-frame	ENST00000550735	ENST00000551404		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
5CDS-intron	ENST00000550735	ENST00000547305		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
5CDS-intron	ENST00000550735	ENST00000546394		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
In-frame	ENST00000551404	ENST00000550735		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
In-frame	ENST00000551404	ENST00000551404		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
5CDS-intron	ENST00000551404	ENST00000547305		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
5CDS-intron	ENST00000551404	ENST00000546394		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-3CDS	ENST00000547305	ENST00000550735		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-3CDS	ENST00000547305	ENST00000551404		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-intron	ENST00000547305	ENST00000547305		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-intron	ENST00000547305	ENST00000546394		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-3CDS	ENST00000546394	ENST00000550735		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-3CDS	ENST00000546394	ENST00000551404		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-intron	ENST00000546394	ENST00000547305		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-intron	ENST00000546394	ENST00000546394		ChiTaRS3.1			BE169498	MAPKAPK5	chr12	112326390	-	MAPKAPK5	chr12	112326778	+
intron-3CDS	ENST00000265260	ENST00000348956		ChiTaRS3.1			AI184838	PCNP	chr3	101295384	+	CKB	chr14	103987665	+
intron-3CDS	ENST00000469941	ENST00000348956		ChiTaRS3.1			AI184838	PCNP	chr3	101295384	+	CKB	chr14	103987665	+
intron-3CDS	ENST00000296024	ENST00000348956		ChiTaRS3.1			AI184838	PCNP	chr3	101295384	+	CKB	chr14	103987665	+
intron-3CDS	ENST00000486406	ENST00000348956		ChiTaRS3.1			AI184838	PCNP	chr3	101295384	+	CKB	chr14	103987665	+
3UTR-3UTR	ENST00000507606	ENST00000507606		ChiTaRS3.1			BE075528	C7orf73	chr7	135359535	-	C7orf73	chr7	135359354	+
3UTR-intron	ENST00000507606	ENST00000422968		ChiTaRS3.1			BE075528	C7orf73	chr7	135359535	-	C7orf73	chr7	135359354	+
intron-3UTR	ENST00000422968	ENST00000507606		ChiTaRS3.1			BE075528	C7orf73	chr7	135359535	-	C7orf73	chr7	135359354	+
intron-intron	ENST00000422968	ENST00000422968		ChiTaRS3.1			BE075528	C7orf73	chr7	135359535	-	C7orf73	chr7	135359354	+
intron-intron	ENST00000424272	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000424272	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000424272	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000424272	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000424272	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000424272	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000424272	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409929	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409929	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409929	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409929	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409929	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409929	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409929	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000409589	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000409589	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000409589	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000409589	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000409589	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000409589	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000409589	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409329	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409329	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409329	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409329	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409329	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409329	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409329	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409288	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409288	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409288	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409288	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-intron	ENST00000409288	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409288	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
intron-3UTR	ENST00000409288	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000410023	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000410023	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000410023	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000410023	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000410023	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000410023	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000410023	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000233946	ENST00000424272		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000233946	ENST00000409929		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000233946	ENST00000409589		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000233946	ENST00000409329		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-intron	ENST00000233946	ENST00000409288		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000233946	ENST00000410023		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3UTR	ENST00000233946	ENST00000233946		ChiTaRS3.1			BE842588	IL1R1	chr2	102794956	-	IL1R1	chr2	102795017	+
3UTR-3CDS	ENST00000311481	ENST00000394054		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
3UTR-3CDS	ENST00000311481	ENST00000326151		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
3UTR-3CDS	ENST00000311481	ENST00000326172		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
3UTR-3CDS	ENST00000527397	ENST00000394054		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
3UTR-3CDS	ENST00000527397	ENST00000326151		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
3UTR-3CDS	ENST00000527397	ENST00000326172		ChiTaRS3.1			AF121168	RAB1B	chr11	66044064	+	NFKBIZ	chr3	101576226	-
intron-3CDS	ENST00000400099	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400099	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400099	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000400099	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400094	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400094	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400094	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000400094	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000284971	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000284971	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000284971	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000284971	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000457143	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000457143	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000457143	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000457143	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400090	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400090	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400090	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000400090	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400087	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400087	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400087	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000400087	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400093	ENST00000301964		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400093	ENST00000440161		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000400093	ENST00000343450		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-intron	ENST00000400093	ENST00000492635		ChiTaRS3.1			AA977788	ATP5J	chr21	27101993	+	TADA3	chr3	9828725	-
intron-3CDS	ENST00000258729	ENST00000381227		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000258729	ENST00000431623		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000258729	ENST00000441246		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000258729	ENST00000314595		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-intron	ENST00000258729	ENST00000510355		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000491719	ENST00000381227		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000491719	ENST00000431623		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000491719	ENST00000441246		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-3CDS	ENST00000491719	ENST00000314595		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-intron	ENST00000491719	ENST00000510355		ChiTaRS3.1			W81438	IGF2BP3	chr7	23419096	-	POLR2B	chr4	57897082	-
intron-intron	ENST00000534894	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000534894	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000536810	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000545257	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355995	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000543371	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000355717	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000538897	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000349937	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369397	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000352065	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369395	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000542695	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369389	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000369386	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000352140		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000594404		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000367376		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000442510		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000348564		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000598951		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000367364		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000413409		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-intron	ENST00000466338	ENST00000391970		ChiTaRS3.1			BF910138	TCF7L2	chr10	114823655	-	PTPRC	chr1	198665721	-
intron-3CDS	ENST00000384994	ENST00000430710		ChiTaRS3.1			BF351558	NEAT1	chr11	65193593	-	CHD8	chr14	21860878	+
intron-3CDS	ENST00000384994	ENST00000399982		ChiTaRS3.1			BF351558	NEAT1	chr11	65193593	-	CHD8	chr14	21860878	+
intron-3CDS	ENST00000384994	ENST00000557364		ChiTaRS3.1			BF351558	NEAT1	chr11	65193593	-	CHD8	chr14	21860878	+
intron-intron	ENST00000384994	ENST00000555962		ChiTaRS3.1			BF351558	NEAT1	chr11	65193593	-	CHD8	chr14	21860878	+
intron-intron	ENST00000355387	ENST00000389462		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000355387	ENST00000309083		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000355387	ENST00000538057		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-intron	ENST00000361799	ENST00000389462		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000361799	ENST00000309083		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000361799	ENST00000538057		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-intron	ENST00000372247	ENST00000389462		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000372247	ENST00000309083		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000372247	ENST00000538057		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-intron	ENST00000443020	ENST00000389462		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000443020	ENST00000309083		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000443020	ENST00000538057		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-intron	ENST00000480686	ENST00000389462		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000480686	ENST00000309083		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-3UTR	ENST00000480686	ENST00000538057		ChiTaRS3.1			BF953818	RNF220	chr1	45113129	+	PTMS	chr12	6879915	-
intron-intron	ENST00000371627	ENST00000375679		ChiTaRS3.1			DA377618	TNKS2	chr10	93609803	+	CLCNKB	chr1	16373688	-
intron-intron	ENST00000371627	ENST00000375667		ChiTaRS3.1			DA377618	TNKS2	chr10	93609803	+	CLCNKB	chr1	16373688	-
intron-intron	ENST00000455963	ENST00000369252		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000533213		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000277895		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000369266		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000392952		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000369253		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000455963	ENST00000477638		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000369252		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000533213		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000277895		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000369266		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000392952		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000369253		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000436758	ENST00000477638		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000369252		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000533213		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000277895		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000369266		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000392952		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000369253		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000444500	ENST00000477638		ChiTaRS3.1			BI037108	JAZF1-AS1	chr7	28269062	-	ABLIM1	chr10	116273615	-
intron-intron	ENST00000464527	ENST00000263119		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000464527	ENST00000405822		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000464527	ENST00000398319		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000464527	ENST00000337989		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000464527	ENST00000485008		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000445927	ENST00000263119		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000445927	ENST00000405822		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000445927	ENST00000398319		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000445927	ENST00000337989		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000445927	ENST00000485008		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000294947	ENST00000263119		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000294947	ENST00000405822		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000294947	ENST00000398319		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000294947	ENST00000337989		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
intron-intron	ENST00000294947	ENST00000485008		ChiTaRS3.1			BP219658	C2orf61	chr2	47389710	-	CABIN1	chr22	24491284	+
5CDS-intron	ENST00000597275	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000597275	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000597275	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000597275	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000597275	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000597275	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000496529	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000496529	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000496529	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000496529	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000496529	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000496529	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000376396	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000376396	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000376396	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000376396	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000376396	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000376396	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000422185	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000422185	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000422185	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000422185	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000422185	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000422185	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000603986	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000603986	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000603986	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000603986	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000603986	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000603986	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000536628	ENST00000597275		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000536628	ENST00000496529		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000536628	ENST00000376396		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000536628	ENST00000422185		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-3UTR	ENST00000536628	ENST00000603986		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
5CDS-intron	ENST00000536628	ENST00000536628		ChiTaRS3.1			AA639618	CCDC120	chrX	48921443	-	CCDC120	chrX	48926198	-
In-frame	ENST00000403681	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000403681	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000403681	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000541363	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000541363	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393577	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393577	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000393578	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000393578	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000425208	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000425208	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000536545	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000536545	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487861		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000471583		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000487270		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000488612		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
In-frame	ENST00000354636	ENST00000390683		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
5CDS-3UTR	ENST00000354636	ENST00000469165		ChiTaRS3.1			AY138858	HMGA2	chr12	66232351	+	RAD51B	chr14	68758600	+
3UTR-intron	ENST00000332674	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000332674	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000332674	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000332674	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000332674	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000332674	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000361248	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000361248	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000361248	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000361248	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000361248	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000361248	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000239007	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000239007	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000239007	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000239007	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000239007	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000239007	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000393134	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000393134	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-5UTR	ENST00000393134	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-5UTR	ENST00000393134	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000393134	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000393134	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000485566	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000485566	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000485566	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-5UTR	ENST00000485566	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000485566	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
3UTR-intron	ENST00000485566	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000369612	ENST00000332674		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000369612	ENST00000361248		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-5UTR	ENST00000369612	ENST00000239007		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-5UTR	ENST00000369612	ENST00000393134		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000369612	ENST00000485566		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000369612	ENST00000369612		ChiTaRS3.1			L07648	MXI1	chr10	112046160	-	MXI1	chr10	111985928	+
intron-intron	ENST00000437099	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000437099	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000437099	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000437099	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000323816	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000323816	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000323816	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000323816	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000432992	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000432992	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000432992	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000432992	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000540214	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000540214	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000540214	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000540214	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000585266	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000585266	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000585266	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000585266	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000580865	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000580865	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000580865	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000580865	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000583882	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000583882	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000583882	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000583882	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000542249	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000542249	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000542249	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000542249	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000396115	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000396115	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000396115	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000396115	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000579158	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000579158	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000579158	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000579158	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000578655	ENST00000370328		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000578655	ENST00000370325		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000578655	ENST00000393914		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-intron	ENST00000578655	ENST00000483564		ChiTaRS3.1			CV404858	GAS7	chr17	10065116	+	GABRE	chrX	151142629	-
intron-3CDS	ENST00000302003	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000302003	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
3UTR-3CDS	ENST00000344629	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
3UTR-intron	ENST00000344629	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000349503	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000349503	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000302036	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000302036	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000339511	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000339511	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000436092	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000436092	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000449570	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000449570	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000302008	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000302008	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-3CDS	ENST00000383826	ENST00000310942		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000383826	ENST00000269399		ChiTaRS3.1			AI554178	OGG1	chr3	9799121	+	CBX2	chr17	77758760	-
intron-intron	ENST00000521891	ENST00000298834		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000426438		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000314845		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000533727		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000534300		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000458649		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000528950		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000529963		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000298834		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000426438		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000314845		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000533727		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000534300		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000458649		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000528950		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000529963		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000298834		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000426438		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000314845		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000533727		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000534300		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000458649		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000528950		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000529963		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000298834		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000426438		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000314845		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000533727		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000534300		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000458649		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000528950		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000529963		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000298834		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000426438		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000314845		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000533727		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000534300		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000458649		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000528950		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000529963		ChiTaRS3.1			AW389898	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000378300	ENST00000371522		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378300	ENST00000358358		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378300	ENST00000536120		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378300	ENST00000541281		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378300	ENST00000480312		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378292	ENST00000371522		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378292	ENST00000358358		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378292	ENST00000536120		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378292	ENST00000541281		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000378292	ENST00000480312		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000329305	ENST00000371522		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000329305	ENST00000358358		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000329305	ENST00000536120		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000329305	ENST00000541281		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000329305	ENST00000480312		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360958	ENST00000371522		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360958	ENST00000358358		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360958	ENST00000536120		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360958	ENST00000541281		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360958	ENST00000480312		ChiTaRS3.1			DB248548	TPM2	chr9	35683263	-	ECHDC2	chr1	53370622	-
intron-intron	ENST00000360843	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000360843	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000360843	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000360843	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000360843	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000360843	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000431350	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000442919	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000521943	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000434911	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000408982		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000262477		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000537505		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000546142		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000341923		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-intron	ENST00000486857	ENST00000570487		ChiTaRS3.1			DA277848	TLK1	chr2	171942324	-	RABEP1	chr17	5283330	-
intron-3CDS	ENST00000519716	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000519716		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000252773		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000428389		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000551649		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000552293		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000550896		ChiTaRS3.1			BE767128	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
5CDS-intron	ENST00000343110	ENST00000296449		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
5CDS-intron	ENST00000343110	ENST00000438782		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
5CDS-intron	ENST00000343110	ENST00000452691		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
5CDS-3UTR	ENST00000343110	ENST00000366429		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
5CDS-3UTR	ENST00000343110	ENST00000451634		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
5CDS-intron	ENST00000343110	ENST00000493870		ChiTaRS3.1			BM686368	PRELP	chr1	203452459	+	CCDC36	chr3	49282867	+
intron-intron	ENST00000439040	ENST00000439040		ChiTaRS3.1			BE180488	ATP13A3	chr3	194154876	-	ATP13A3	chr3	194154646	+
intron-intron	ENST00000439040	ENST00000256031		ChiTaRS3.1			BE180488	ATP13A3	chr3	194154876	-	ATP13A3	chr3	194154646	+
intron-intron	ENST00000256031	ENST00000439040		ChiTaRS3.1			BE180488	ATP13A3	chr3	194154876	-	ATP13A3	chr3	194154646	+
intron-intron	ENST00000256031	ENST00000256031		ChiTaRS3.1			BE180488	ATP13A3	chr3	194154876	-	ATP13A3	chr3	194154646	+
3UTR-intron	ENST00000260356	ENST00000510514		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
3UTR-intron	ENST00000260356	ENST00000555236		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
3UTR-intron	ENST00000260356	ENST00000434623		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
3UTR-intron	ENST00000260356	ENST00000374525		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
3UTR-intron	ENST00000260356	ENST00000259318		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
3UTR-intron	ENST00000260356	ENST00000482335		ChiTaRS3.1			BE093698	THBS1	chr15	39888069	+	AKAP2	chr9	112719092	+
intron-intron	ENST00000282397	ENST00000524630		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000529919		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000399039		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000360682		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000361796		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000361391		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000530094		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000428599		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000361332		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000527467		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000415361		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000532245		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000532463		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000528232		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000529986		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000531014		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000358694		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000526772		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000532787		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000533667		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000529873		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000525902		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000529526		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000532649		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000426142		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000532844		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000528621		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000399050		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000526357		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000530748		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000534579		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000282397	ENST00000526938		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000524630		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000529919		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000399039		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000360682		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000361796		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000361391		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000530094		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000428599		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000361332		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000527467		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000415361		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000532245		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000532463		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000528232		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000529986		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000531014		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000358694		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000526772		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000532787		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000533667		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000529873		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000525902		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000529526		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000532649		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000426142		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000532844		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000528621		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000399050		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000526357		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000530748		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000534579		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000541932	ENST00000526938		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000524630		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000529919		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000399039		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000360682		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000361796		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000361391		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000530094		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000428599		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000361332		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000527467		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000415361		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000532245		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000532463		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000528232		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000529986		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000531014		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000358694		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000526772		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000532787		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000533667		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000529873		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000525902		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000529526		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000532649		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000426142		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000532844		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000528621		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000399050		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000526357		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000530748		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000534579		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000543394	ENST00000526938		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000524630		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000529919		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000399039		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000360682		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000361796		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000361391		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000530094		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000428599		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000361332		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000527467		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000415361		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000532245		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000532463		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000528232		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000529986		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000531014		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000358694		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000526772		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000532787		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000533667		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000529873		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000525902		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000529526		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000532649		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000426142		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000532844		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000528621		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000399050		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000526357		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000530748		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000534579		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000540678	ENST00000526938		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000524630		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000529919		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000399039		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000360682		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000361796		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000361391		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000530094		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000428599		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000361332		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000527467		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000415361		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000532245		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000532463		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000528232		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000529986		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000531014		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000358694		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000526772		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000532787		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000533667		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000529873		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000525902		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000529526		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000532649		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000426142		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000532844		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000528621		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000399050		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000526357		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000530748		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000534579		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000539099	ENST00000526938		ChiTaRS3.1			BF351098	FLT1	chr13	28964014	-	CTNND1	chr11	57545740	-
intron-intron	ENST00000268379	ENST00000268379		ChiTaRS3.1			BE148688	UQCRC2	chr16	21966722	-	UQCRC2	chr16	21966954	+
intron-intron	ENST00000268379	ENST00000561553		ChiTaRS3.1			BE148688	UQCRC2	chr16	21966722	-	UQCRC2	chr16	21966954	+
intron-intron	ENST00000561553	ENST00000268379		ChiTaRS3.1			BE148688	UQCRC2	chr16	21966722	-	UQCRC2	chr16	21966954	+
intron-intron	ENST00000561553	ENST00000561553		ChiTaRS3.1			BE148688	UQCRC2	chr16	21966722	-	UQCRC2	chr16	21966954	+
intron-intron	ENST00000344157	ENST00000261406		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000344157	ENST00000546220		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000355665	ENST00000261406		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000355665	ENST00000546220		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000579690	ENST00000261406		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000579690	ENST00000546220		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000552105	ENST00000261406		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000552105	ENST00000546220		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000550485	ENST00000261406		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000550485	ENST00000546220		ChiTaRS3.1			AW467048	YTHDC1	chr4	9026	+	EMG1	chr12	7088639	+
intron-intron	ENST00000272238	ENST00000323963		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
intron-intron	ENST00000272238	ENST00000440191		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
intron-intron	ENST00000272238	ENST00000356531		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
3UTR-intron	ENST00000381661	ENST00000323963		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
3UTR-intron	ENST00000381661	ENST00000440191		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
3UTR-intron	ENST00000381661	ENST00000356531		ChiTaRS3.1			AI810008	ATP6V1C2	chr2	10923658	+	EIF4A2	chr3	186506831	-
3UTR-intron	ENST00000244061	ENST00000244061		ChiTaRS3.1			BP351618	RNF114	chr20	48569241	+	RNF114	chr20	48552936	+
intron-intron	ENST00000344683	ENST00000258484		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000344683	ENST00000409654		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000519480	ENST00000258484		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000519480	ENST00000409654		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000522905	ENST00000258484		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000522905	ENST00000409654		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000521175	ENST00000258484		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-intron	ENST00000521175	ENST00000409654		ChiTaRS3.1			BE842988	MCPH1	chr8	6420156	-	EPC2	chr2	149543299	+
intron-3UTR	ENST00000263867	ENST00000319394		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000263867	ENST00000361771		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409921	ENST00000319394		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409921	ENST00000361771		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409670	ENST00000319394		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409670	ENST00000361771		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409724	ENST00000319394		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000409724	ENST00000361771		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000483659	ENST00000319394		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000483659	ENST00000361771		ChiTaRS3.1			AW276648	CAPG	chr2	85621981	+	WDTC1	chr1	27632972	-
3UTR-intron	ENST00000262643	ENST00000321331		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000262643	ENST00000418900		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000262643	ENST00000470543		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000262643	ENST00000430190		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000262643	ENST00000452906		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000357943	ENST00000321331		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000357943	ENST00000418900		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000357943	ENST00000470543		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000357943	ENST00000430190		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000357943	ENST00000452906		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000444983	ENST00000321331		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000444983	ENST00000418900		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000444983	ENST00000470543		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000444983	ENST00000430190		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-intron	ENST00000444983	ENST00000452906		ChiTaRS3.1			AA866138	CCNE1	chr19	30315101	-	HIGD1A	chr3	42842449	+
3UTR-3UTR	ENST00000359546	ENST00000359546		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
3UTR-intron	ENST00000359546	ENST00000506642		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
3UTR-intron	ENST00000359546	ENST00000393745		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
3UTR-intron	ENST00000359546	ENST00000512824		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
3UTR-intron	ENST00000359546	ENST00000515094		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-3UTR	ENST00000506642	ENST00000359546		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000506642	ENST00000506642		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000506642	ENST00000393745		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000506642	ENST00000512824		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000506642	ENST00000515094		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-3UTR	ENST00000393745	ENST00000359546		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000393745	ENST00000506642		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000393745	ENST00000393745		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000393745	ENST00000512824		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000393745	ENST00000515094		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-3UTR	ENST00000512824	ENST00000359546		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000512824	ENST00000506642		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000512824	ENST00000393745		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000512824	ENST00000512824		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000512824	ENST00000515094		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-3UTR	ENST00000515094	ENST00000359546		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000515094	ENST00000506642		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000515094	ENST00000393745		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000515094	ENST00000512824		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-intron	ENST00000515094	ENST00000515094		ChiTaRS3.1			T31038	CPLX2	chr5	175310427	-	CPLX2	chr5	175310595	+
intron-3UTR	ENST00000358691	ENST00000401088		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000358691	ENST00000471507		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000358691	ENST00000401089		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000358691	ENST00000375590		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000358691	ENST00000492354		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000358691	ENST00000472461		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580168	ENST00000401088		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580168	ENST00000471507		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580168	ENST00000401089		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580168	ENST00000375590		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580168	ENST00000492354		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580168	ENST00000472461		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580662	ENST00000401088		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580662	ENST00000471507		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580662	ENST00000401089		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580662	ENST00000375590		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-3UTR	ENST00000580662	ENST00000492354		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000580662	ENST00000472461		ChiTaRS3.1			BQ301268	HELZ	chr17	65105648	+	SZRD1	chr1	16724325	-
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			DQ100455	ETV6	chr12	12026182	+	RUNX1	chr21	36271445	-
In-frame	ENST00000301740	ENST00000301740		ChiTaRS3.1			BX647088	SRRM2	chr16	2807794	-	SRRM2	chr16	2806505	+
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BX647088	SRRM2	chr16	2807794	-	SRRM2	chr16	2806505	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BX647088	SRRM2	chr16	2807794	-	SRRM2	chr16	2806505	+
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BX647088	SRRM2	chr16	2807794	-	SRRM2	chr16	2806505	+
intron-intron	ENST00000445552	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000445552	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000337845	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000329240	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000573185	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000570550	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000336125	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549904	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000550273	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000549665	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000574590		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000575318		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000572904		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000262419		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000432791		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000393476		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
intron-intron	ENST00000553155	ENST00000576248		ChiTaRS3.1			BM727798	ARL17A	chr17	751413	-	KANSL1	chr17	44115883	-
5CDS-3UTR	ENST00000375114	ENST00000375114		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000375114	ENST00000246194		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
5CDS-intron	ENST00000375114	ENST00000493399		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000246194	ENST00000375114		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
5CDS-3UTR	ENST00000246194	ENST00000246194		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
5CDS-intron	ENST00000246194	ENST00000493399		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
intron-3UTR	ENST00000493399	ENST00000375114		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
intron-3UTR	ENST00000493399	ENST00000246194		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
intron-intron	ENST00000493399	ENST00000493399		ChiTaRS3.1			BE937778	RALY	chr20	32664927	-	RALY	chr20	32667831	-
intron-intron	ENST00000315436	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000315436	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000315436	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000315436	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000315436	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000315436	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000542304	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000441406	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000544233	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000535496	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000315436		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000542304		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000441406		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000544233		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000535496		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
intron-intron	ENST00000536738	ENST00000536738		ChiTaRS3.1			AY129018	WSB2	chr12	118478645	+	WSB2	chr12	118476691	+
5CDS-intron	ENST00000380956	ENST00000368279		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
5CDS-intron	ENST00000380956	ENST00000368273		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
5CDS-intron	ENST00000380956	ENST00000368277		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
5CDS-intron	ENST00000380956	ENST00000565805		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
5CDS-intron	ENST00000380956	ENST00000567140		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
3UTR-intron	ENST00000495137	ENST00000368279		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
3UTR-intron	ENST00000495137	ENST00000368273		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
3UTR-intron	ENST00000495137	ENST00000368277		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
3UTR-intron	ENST00000495137	ENST00000565805		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
3UTR-intron	ENST00000495137	ENST00000567140		ChiTaRS3.1			BE830408	IRF4	chr6	395008	+	PMF1	chr1	156195488	-
intron-3UTR	ENST00000375640	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375641	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375638	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375635	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375639	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375642	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000395789	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000375633	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000395788	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000424962	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000456268	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000435938	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000433752	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000458514	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000549426	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000550200	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000430690	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000436558	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000456690	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000439907	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000444974	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000439865	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000413638	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000423640	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000444192	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000551797	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000552514	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000440361	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000443974	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000416886	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000436205	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000450610	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000433697	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000414434	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000421605	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000444331	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000551957	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000550492	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000423916	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000436495	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000426843	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000421039	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000414536	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000400038	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000383384	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000383385	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000383383	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5CDS-3UTR	ENST00000547624	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5CDS-3UTR	ENST00000550685	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000400037	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
5UTR-3UTR	ENST00000400035	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000400034	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3UTR	ENST00000400039	ENST00000473414		ChiTaRS3.1			BG493098	C6orf48	chr6	3096425	+	COMMD2	chr3	149457194	-
intron-3CDS	ENST00000296255	ENST00000296255		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-3CDS	ENST00000296255	ENST00000497289		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-intron	ENST00000296255	ENST00000490166		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-3CDS	ENST00000497289	ENST00000296255		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-3CDS	ENST00000497289	ENST00000497289		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-intron	ENST00000497289	ENST00000490166		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-3CDS	ENST00000490166	ENST00000296255		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-3CDS	ENST00000490166	ENST00000497289		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-intron	ENST00000490166	ENST00000490166		ChiTaRS3.1			AW067818	RPN1	chr3	128339405	+	RPN1	chr3	128339270	-
intron-intron	ENST00000282588	ENST00000392491		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000607474		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000368452		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000368448		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000392490		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000258014		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000354275		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000282588	ENST00000368446		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000392491		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000607474		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000368452		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000368448		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000392490		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000258014		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000354275		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000504086	ENST00000368446		ChiTaRS3.1			CV416658	ITGA1	chr5	52153457	-	PKIB	chr6	123029346	+
intron-intron	ENST00000379341	ENST00000379341		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000379341	ENST00000495599		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000379341	ENST00000379331		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000495599	ENST00000379341		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000495599	ENST00000495599		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000495599	ENST00000379331		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000379331	ENST00000379341		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000379331	ENST00000495599		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-intron	ENST00000379331	ENST00000379331		ChiTaRS3.1			BE165018	PRDX4	chrX	23704321	-	PRDX4	chrX	23704268	+
intron-3CDS	ENST00000381323	ENST00000352645		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-3CDS	ENST00000381323	ENST00000351589		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-3CDS	ENST00000355549	ENST00000352645		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-3CDS	ENST00000355549	ENST00000351589		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-3CDS	ENST00000406434	ENST00000352645		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-3CDS	ENST00000406434	ENST00000351589		ChiTaRS3.1			AI739458	FAM49A	chr2	16740961	+	ZC3H7B	chr22	41723290	-
intron-intron	ENST00000371839	ENST00000449098		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000320084		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000336053		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000554969		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000556142		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000554455		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000430246		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000553753		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000555914		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000555309		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000556628		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000555883		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000556513		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000557201		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000553300		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000556897		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371839	ENST00000420743		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000449098		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000320084		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000336053		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000554969		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000556142		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000554455		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000430246		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000553753		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000555914		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000555309		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000556628		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000555883		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000556513		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000557201		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000553300		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000556897		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371838	ENST00000420743		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000449098		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000320084		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000336053		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000554969		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000556142		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000554455		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000430246		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000553753		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000555914		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000555309		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000556628		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000555883		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000556513		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000557201		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000553300		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000556897		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000371836	ENST00000420743		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000449098		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000320084		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000336053		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000554969		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000556142		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000554455		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000430246		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000553753		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000555914		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000555309		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000556628		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000555883		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000556513		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000557201		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000553300		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000556897		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000334103	ENST00000420743		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000449098		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000320084		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000336053		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000554969		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000556142		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000554455		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000430246		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000553753		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000555914		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000555309		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000556628		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000555883		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000556513		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000557201		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000553300		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000556897		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
intron-intron	ENST00000497451	ENST00000420743		ChiTaRS3.1			CV353238	AGBL4	chr1	49610823	+	HNRNPC	chr14	21703432	-
Frame-shit	ENST00000322764	ENST00000322764		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000322764	ENST00000449423		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000322764	ENST00000392910		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
5CDS-intron	ENST00000322764	ENST00000477373		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
Frame-shit	ENST00000449423	ENST00000322764		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000449423	ENST00000449423		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000449423	ENST00000392910		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
5CDS-intron	ENST00000449423	ENST00000477373		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
Frame-shit	ENST00000392910	ENST00000322764		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000392910	ENST00000449423		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
In-frame	ENST00000392910	ENST00000392910		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
5CDS-intron	ENST00000392910	ENST00000477373		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
intron-3CDS	ENST00000477373	ENST00000322764		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
intron-3CDS	ENST00000477373	ENST00000449423		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
intron-3CDS	ENST00000477373	ENST00000392910		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
intron-intron	ENST00000477373	ENST00000477373		ChiTaRS3.1			CB159118	ZYX	chr7	143085923	-	ZYX	chr7	143087690	+
intron-intron	ENST00000530157	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000530157	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000530157	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000530157	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000530157	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000530157	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000530157	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000530157	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000525451	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000525451	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000525451	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000525451	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000525451	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000525451	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000525451	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000525451	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000308162	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000308162	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000308162	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000308162	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000308162	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000308162	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000308162	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000308162	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000527344	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000527344	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000527344	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000527344	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000527344	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000527344	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000527344	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000527344	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531407	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531407	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531407	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531407	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531407	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531407	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531407	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531407	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000524553	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000524553	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000524553	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000524553	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000524553	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000524553	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000524553	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000524553	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000534769	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000534769	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000534769	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000534769	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000534769	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000534769	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000534769	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000534769	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531413	ENST00000530157		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531413	ENST00000525451		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-intron	ENST00000531413	ENST00000308162		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531413	ENST00000527344		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531413	ENST00000531407		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531413	ENST00000524553		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531413	ENST00000534769		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-5UTR	ENST00000531413	ENST00000531413		ChiTaRS3.1			CN291748	CFL1	chr11	65622906	-	CFL1	chr11	65623666	-
intron-3UTR	ENST00000284770	ENST00000301908		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-3UTR	ENST00000284770	ENST00000522209		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-3UTR	ENST00000284771	ENST00000301908		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-3UTR	ENST00000284771	ENST00000522209		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-3UTR	ENST00000284767	ENST00000301908		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-3UTR	ENST00000284767	ENST00000522209		ChiTaRS3.1			AW383368	PDLIM3	chr4	186453609	+	PNOC	chr8	28200697	-
intron-intron	ENST00000336338	ENST00000318388		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000336338	ENST00000497577		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000336338	ENST00000400033		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000336338	ENST00000465096		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000492438	ENST00000318388		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000492438	ENST00000497577		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000492438	ENST00000400033		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000492438	ENST00000465096		ChiTaRS3.1			BQ429818	SPAG17	chr1	118640301	-	NDUFV2	chr18	9126683	-
intron-intron	ENST00000286301	ENST00000262241		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-intron	ENST00000286301	ENST00000570597		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-intron	ENST00000515239	ENST00000262241		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-intron	ENST00000515239	ENST00000570597		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-intron	ENST00000543093	ENST00000262241		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-intron	ENST00000543093	ENST00000570597		ChiTaRS3.1			BI050908	CSF1R	chr5	149449829	+	RCOR1	chr14	103084883	+
intron-3UTR	ENST00000541509	ENST00000307201		ChiTaRS3.1			BF358668	PIP5K1B	chr9	71582212	-	ABHD15	chr17	27889480	-
intron-3UTR	ENST00000265382	ENST00000307201		ChiTaRS3.1			BF358668	PIP5K1B	chr9	71582212	-	ABHD15	chr17	27889480	-
intron-3UTR	ENST00000474356	ENST00000307201		ChiTaRS3.1			BF358668	PIP5K1B	chr9	71582212	-	ABHD15	chr17	27889480	-
intron-3UTR	ENST00000318006	ENST00000318006		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000318006	ENST00000348544		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000318006	ENST00000568357		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-3UTR	ENST00000348544	ENST00000318006		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000348544	ENST00000348544		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000348544	ENST00000568357		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-3UTR	ENST00000568357	ENST00000318006		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000568357	ENST00000348544		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-intron	ENST00000568357	ENST00000568357		ChiTaRS3.1			BE816198	VPS39	chr15	42451747	+	VPS39	chr15	42451502	-
intron-3UTR	ENST00000380394	ENST00000534336		ChiTaRS3.1			BF815928	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000498815	ENST00000534336		ChiTaRS3.1			BF815928	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000380384	ENST00000534336		ChiTaRS3.1			BF815928	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000315377	ENST00000534336		ChiTaRS3.1			BF815928	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-3UTR	ENST00000380381	ENST00000534336		ChiTaRS3.1			BF815928	RPS6	chr9	19379594	+	MALAT1	chr11	65266525	+
intron-intron	ENST00000263805	ENST00000337273		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000454282		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000447967		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000523768		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000513944		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000506351		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000337273		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000454282		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000447967		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000523768		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000513944		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000506351		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000337273		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000454282		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000447967		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000523768		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000513944		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000506351		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000337273		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000454282		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000447967		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000523768		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000513944		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000506351		ChiTaRS3.1			BE701928	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-3CDS	ENST00000357214	ENST00000357214		ChiTaRS3.1			BE385898	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000357214	ENST00000468598		ChiTaRS3.1			BE385898	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-3CDS	ENST00000468598	ENST00000357214		ChiTaRS3.1			BE385898	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-intron	ENST00000468598	ENST00000468598		ChiTaRS3.1			BE385898	SFPQ	chr1	35656512	+	SFPQ	chr1	35656471	-
intron-3CDS	ENST00000369061	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369061	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369061	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000369061	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000357555	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000357555	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000357555	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000357555	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000358487	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000358487	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000358487	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000358487	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000356226	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000356226	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000356226	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000356226	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369060	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369060	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369060	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000369060	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369059	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369059	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369059	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000369059	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000346997	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000346997	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000346997	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000346997	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000457416	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000457416	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000457416	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000457416	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000351936	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000351936	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000351936	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000351936	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000360144	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000360144	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000360144	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000360144	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369056	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369056	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000369056	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000369056	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000490349	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000490349	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000490349	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000490349	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000359354	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000359354	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000359354	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000359354	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000478859	ENST00000339772		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000478859	ENST00000535456		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3CDS	ENST00000478859	ENST00000389881		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
intron-3UTR	ENST00000478859	ENST00000529077		ChiTaRS3.1			AI379298	FGFR2	chr10	123238028	+	GLB1L2	chr11	134244080	-
3UTR-3UTR	ENST00000450849	ENST00000450849		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000450849	ENST00000301260		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000450849	ENST00000595916		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000450849	ENST00000398448		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000450849	ENST00000600960		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000301260	ENST00000450849		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-intron	ENST00000301260	ENST00000301260		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-intron	ENST00000301260	ENST00000595916		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000301260	ENST00000398448		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000301260	ENST00000600960		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000595916	ENST00000450849		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-intron	ENST00000595916	ENST00000301260		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-intron	ENST00000595916	ENST00000595916		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000595916	ENST00000398448		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-3UTR	ENST00000595916	ENST00000600960		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000398448	ENST00000450849		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000398448	ENST00000301260		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000398448	ENST00000595916		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000398448	ENST00000398448		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000398448	ENST00000600960		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000600960	ENST00000450849		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000600960	ENST00000301260		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-intron	ENST00000600960	ENST00000595916		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000600960	ENST00000398448		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
3UTR-3UTR	ENST00000600960	ENST00000600960		ChiTaRS3.1			BF527108	ATCAY	chr19	3924837	-	ATCAY	chr19	3924865	+
intron-intron	ENST00000285419	ENST00000265769		ChiTaRS3.1			BG925828	TMEM55A	chr8	92006832	-	ADAM28	chr8	24208468	+
intron-intron	ENST00000285419	ENST00000540823		ChiTaRS3.1			BG925828	TMEM55A	chr8	92006832	-	ADAM28	chr8	24208468	+
intron-intron	ENST00000285419	ENST00000397649		ChiTaRS3.1			BG925828	TMEM55A	chr8	92006832	-	ADAM28	chr8	24208468	+
intron-intron	ENST00000285419	ENST00000437154		ChiTaRS3.1			BG925828	TMEM55A	chr8	92006832	-	ADAM28	chr8	24208468	+
intron-intron	ENST00000285419	ENST00000518516		ChiTaRS3.1			BG925828	TMEM55A	chr8	92006832	-	ADAM28	chr8	24208468	+
intron-3CDS	ENST00000392503	ENST00000418734		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000397676		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000445626		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-3CDS	ENST00000392503	ENST00000455059		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
intron-intron	ENST00000392503	ENST00000463495		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000418734		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000397676		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000445626		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
In-frame	ENST00000334586	ENST00000455059		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
5CDS-intron	ENST00000334586	ENST00000463495		ChiTaRS3.1			BF916298	ZACN	chr17	74077970	-	ALG3	chr3	183960723	+
5CDS-3UTR	ENST00000321153	ENST00000482108		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
5CDS-intron	ENST00000321153	ENST00000488574		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
5CDS-intron	ENST00000321153	ENST00000465184		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
intron-3UTR	ENST00000532004	ENST00000482108		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
intron-intron	ENST00000532004	ENST00000488574		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
intron-intron	ENST00000532004	ENST00000465184		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
5CDS-3UTR	ENST00000530797	ENST00000482108		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
5CDS-intron	ENST00000530797	ENST00000488574		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
5CDS-intron	ENST00000530797	ENST00000465184		ChiTaRS3.1			AA733088	RPLP2	chr11	810275	-	PEG10	chr7	94296378	-
intron-intron	ENST00000287437	ENST00000557515		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000338631		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000357481		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000605057		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000457657		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000262710		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000397341		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000555053		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000287437	ENST00000555352		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000557515		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000338631		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000357481		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000605057		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000457657		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000262710		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000397341		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000555053		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000522563	ENST00000555352		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000557515		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000338631		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000357481		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000605057		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000457657		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000262710		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000397341		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000555053		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000517315	ENST00000555352		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000557515		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000338631		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000357481		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000605057		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000457657		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000262710		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000397341		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000555053		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-intron	ENST00000521460	ENST00000555352		ChiTaRS3.1			CK327028	NSMCE2	chr8	126325820	+	ACIN1	chr14	23540292	-
intron-3CDS	ENST00000315677	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000315677	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000581527	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000581527	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000400147	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000400147	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000400149	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000400149	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000400155	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000400155	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000400150	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000400150	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000584874	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000584874	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000534970	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000534970	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000539435	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000539435	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000581699	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000581699	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000400145	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000400145	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000515196	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000515196	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-3CDS	ENST00000478161	ENST00000373062		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-5UTR	ENST00000478161	ENST00000462812		ChiTaRS3.1			BF930028	DLGAP1	chr18	4218105	+	GNL2	chr1	38034674	-
intron-intron	ENST00000555447	ENST00000171887		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000555447	ENST00000419504		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000555447	ENST00000430930		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000555447	ENST00000310858		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000555447	ENST00000480665		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000267540	ENST00000171887		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000267540	ENST00000419504		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000267540	ENST00000430930		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000267540	ENST00000310858		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000267540	ENST00000480665		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000556280	ENST00000171887		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000556280	ENST00000419504		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000556280	ENST00000430930		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000556280	ENST00000310858		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000556280	ENST00000480665		ChiTaRS3.1			AK024948	STON2	chr14	81876326	-	TNS1	chr2	218678739	-
intron-intron	ENST00000285518	ENST00000285518		ChiTaRS3.1			DA830108	AGPAT5	chr8	6614648	+	AGPAT5	chr8	6612699	+
intron-intron	ENST00000285518	ENST00000530716		ChiTaRS3.1			DA830108	AGPAT5	chr8	6614648	+	AGPAT5	chr8	6612699	+
intron-intron	ENST00000530716	ENST00000285518		ChiTaRS3.1			DA830108	AGPAT5	chr8	6614648	+	AGPAT5	chr8	6612699	+
intron-intron	ENST00000530716	ENST00000530716		ChiTaRS3.1			DA830108	AGPAT5	chr8	6614648	+	AGPAT5	chr8	6612699	+
5CDS-intron	ENST00000589328	ENST00000589328		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5CDS-intron	ENST00000589328	ENST00000409746		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5CDS-intron	ENST00000589328	ENST00000588801		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5CDS-intron	ENST00000409746	ENST00000589328		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5CDS-intron	ENST00000409746	ENST00000409746		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5CDS-intron	ENST00000409746	ENST00000588801		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5UTR-intron	ENST00000588801	ENST00000589328		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5UTR-intron	ENST00000588801	ENST00000409746		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
5UTR-intron	ENST00000588801	ENST00000588801		ChiTaRS3.1			BQ437518	PSTPIP2	chr18	43591147	-	PSTPIP2	chr18	74412568	-
intron-intron	ENST00000583456	ENST00000583456		ChiTaRS3.1			AW390258	MIR548AE2	chr16	48396308	+	MIR548AE2	chr16	48395752	-
intron-3UTR	ENST00000337006	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000376083	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000357081	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000376109	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000432218	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000376081	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000491784	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
intron-3UTR	ENST00000376080	ENST00000293677		ChiTaRS3.1			AL119828	AGTPBP1	chr9	88271447	-	RAVER1	chr19	10426949	-
5CDS-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548118	OFCC1	chr6	9908751	-	OFCC1	chr6	9850631	+
5CDS-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548118	OFCC1	chr6	9908751	-	OFCC1	chr6	9850631	+
5UTR-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548118	OFCC1	chr6	9908751	-	OFCC1	chr6	9850631	+
5UTR-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548118	OFCC1	chr6	9908751	-	OFCC1	chr6	9850631	+
intron-3CDS	ENST00000377516	ENST00000381638		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
intron-intron	ENST00000377516	ENST00000574474		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
intron-3CDS	ENST00000361696	ENST00000381638		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
intron-intron	ENST00000361696	ENST00000574474		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
intron-3CDS	ENST00000054668	ENST00000381638		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
intron-intron	ENST00000054668	ENST00000574474		ChiTaRS3.1			BF895548	UTS2	chr1	7957169	-	ZZEF1	chr17	3957489	-
5CDS-3UTR	ENST00000260585	ENST00000336314		ChiTaRS3.1			AW602498	EPT1	chr2	26611887	-	LARP1	chr5	154196053	+
intron-3UTR	ENST00000462301	ENST00000336314		ChiTaRS3.1			AW602498	EPT1	chr2	26611887	-	LARP1	chr5	154196053	+
intron-intron	ENST00000371989	ENST00000437600		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000292538		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000393824		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000547394		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000360264		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000425244		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000292535		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000549414		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000556210		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000550008		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000546411		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371989	ENST00000560541		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000437600		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000292538		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000393824		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000547394		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000360264		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000425244		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000292535		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000549414		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000556210		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000550008		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000546411		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000485435	ENST00000560541		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000437600		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000292538		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000393824		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000547394		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000360264		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000425244		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000292535		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000549414		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000556210		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000550008		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000546411		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000545297	ENST00000560541		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000437600		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000292538		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000393824		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000547394		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000360264		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000425244		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000292535		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000549414		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000556210		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000550008		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000546411		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000467910	ENST00000560541		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000437600		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000292538		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000393824		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000547394		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000360264		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000425244		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000292535		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000549414		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000556210		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000550008		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000546411		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
intron-intron	ENST00000371991	ENST00000560541		ChiTaRS3.1			R26138	SURF4	chr9	136228512	+	CUX1	chr7	101587853	-
3UTR-intron	ENST00000358344	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000358344	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000506339	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000506339	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000355836	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000355836	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000514633	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000514633	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000515193	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000515193	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000506259	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000506259	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000504898	ENST00000264167		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
3UTR-intron	ENST00000504898	ENST00000409888		ChiTaRS3.1			AW889598	HNRNPAB	chr5	177637986	-	AGPS	chr2	178329049	-
intron-intron	ENST00000396787	ENST00000398344		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000396787	ENST00000350608		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000396787	ENST00000404092		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000396787	ENST00000403754		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000396787	ENST00000430101		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378495	ENST00000398344		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378495	ENST00000350608		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378495	ENST00000404092		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378495	ENST00000403754		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378495	ENST00000430101		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378496	ENST00000398344		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378496	ENST00000350608		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378496	ENST00000404092		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378496	ENST00000403754		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000378496	ENST00000430101		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000481299	ENST00000398344		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000481299	ENST00000350608		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000481299	ENST00000404092		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000481299	ENST00000403754		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000481299	ENST00000430101		ChiTaRS3.1			BF879568	UNC13B	chr9	35306621	-	DDT	chr22	24313054	-
intron-intron	ENST00000316519	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000316519	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000316519	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000261686	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000261686	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000261686	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000316543	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000316543	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000316543	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000545511	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000545511	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000545511	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000543665	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000543665	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000543665	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000398953	ENST00000316623		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000398953	ENST00000561429		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
intron-intron	ENST00000398953	ENST00000560355		ChiTaRS3.1			BF993118	AACS	chr12	125591570	-	FBN1	chr15	48807741	+
In-frame	ENST00000278407	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000278407	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000278407	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000340687	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000340687	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378323	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000378323	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000378324	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000378324	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
In-frame	ENST00000403558	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
5CDS-intron	ENST00000403558	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000278407		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000340687		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000378323		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000378324		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-3CDS	ENST00000531605	ENST00000403558		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-intron	ENST00000531605	ENST00000531605		ChiTaRS3.1			AA326038	SERPING1	chr11	57373568	-	SERPING1	chr11	57373965	+
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			BF089428	IGHG1	chr14	106106606	-	IGHG1	chr14	106311870	-
intron-intron	ENST00000383329	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383329	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383329	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383329	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383329	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383329	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000376228	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000423509	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000430940	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422726	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000424832	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458192	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000422921	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000456487	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000420206	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495725	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419135	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000433153	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000429840	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000457903	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000479546	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400395	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383323	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000434884	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400394	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000494871	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000453809	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000414249	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000419590	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000438171	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000552865	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000495898	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383483	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000383487	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000458668	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000412585		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000425848		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000450871		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000359635		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000435618		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-intron	ENST00000400341	ENST00000421349		ChiTaRS3.1			AW405998	HLA-C	chr6	2570153	+	HLA-B	chr6	2834992	-
intron-3UTR	ENST00000435459	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000435459	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000435459	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383787	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383787	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000383787	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383785	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383785	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000383785	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383788	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383788	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000383788	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000603752	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000603752	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000603752	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383781	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383781	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000383781	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000603808	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000603808	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000603808	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383786	ENST00000273598		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3UTR	ENST00000383786	ENST00000436744		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-intron	ENST00000383786	ENST00000422593		ChiTaRS3.1			BQ347018	COLQ	chr3	15555200	-	NICN1	chr3	49461723	+
intron-3CDS	ENST00000310447	ENST00000310447		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-3UTR	ENST00000310447	ENST00000493642		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-intron	ENST00000310447	ENST00000392925		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-3CDS	ENST00000493642	ENST00000310447		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-3UTR	ENST00000493642	ENST00000493642		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-intron	ENST00000493642	ENST00000392925		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-3CDS	ENST00000392925	ENST00000310447		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-3UTR	ENST00000392925	ENST00000493642		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
intron-intron	ENST00000392925	ENST00000392925		ChiTaRS3.1			AI479768	CASP2	chr7	142999947	-	CASP2	chr7	143002054	-
5CDS-intron	ENST00000326764	ENST00000326764		ChiTaRS3.1			BF952148	LENG8	chr19	54969136	+	LENG8	chr19	54969408	-
5CDS-intron	ENST00000326764	ENST00000376514		ChiTaRS3.1			BF952148	LENG8	chr19	54969136	+	LENG8	chr19	54969408	-
intron-intron	ENST00000376514	ENST00000326764		ChiTaRS3.1			BF952148	LENG8	chr19	54969136	+	LENG8	chr19	54969408	-
intron-intron	ENST00000376514	ENST00000376514		ChiTaRS3.1			BF952148	LENG8	chr19	54969136	+	LENG8	chr19	54969408	-
intron-3UTR	ENST00000536769	ENST00000338244		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000536769	ENST00000379333		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000536769	ENST00000424750		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000536769	ENST00000468355		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000538617	ENST00000338244		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000538617	ENST00000379333		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000538617	ENST00000424750		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000538617	ENST00000468355		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000546120	ENST00000338244		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000546120	ENST00000379333		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000546120	ENST00000424750		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000546120	ENST00000468355		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000339647	ENST00000338244		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000339647	ENST00000379333		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000339647	ENST00000424750		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000339647	ENST00000468355		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000536661	ENST00000338244		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-3UTR	ENST00000536661	ENST00000379333		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000536661	ENST00000424750		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000536661	ENST00000468355		ChiTaRS3.1			BF805458	UBC	chr12	125398278	+	SLC23A2	chr20	4833227	-
intron-intron	ENST00000304043	ENST00000375735		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000304043	ENST00000334267		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000304043	ENST00000398093		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506207	ENST00000375735		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506207	ENST00000334267		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506207	ENST00000398093		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000508488	ENST00000375735		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000508488	ENST00000334267		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000508488	ENST00000398093		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506908	ENST00000375735		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506908	ENST00000334267		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000506908	ENST00000398093		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000513012	ENST00000375735		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000513012	ENST00000334267		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
intron-intron	ENST00000513012	ENST00000398093		ChiTaRS3.1			BX490578	HINT1	chr5	130495306	+	DYNC2H1	chr11	102992225	-
3UTR-3UTR	ENST00000281187	ENST00000281187		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
3UTR-intron	ENST00000281187	ENST00000525095		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
3UTR-intron	ENST00000281187	ENST00000530402		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-3UTR	ENST00000525095	ENST00000281187		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-intron	ENST00000525095	ENST00000525095		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-intron	ENST00000525095	ENST00000530402		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-3UTR	ENST00000530402	ENST00000281187		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-intron	ENST00000530402	ENST00000525095		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-intron	ENST00000530402	ENST00000530402		ChiTaRS3.1			BI013828	VPS26B	chr11	134116800	+	VPS26B	chr11	134117181	-
intron-intron	ENST00000522695	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522695		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000524300		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000523558		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521210		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000355780		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000519961		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521727		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521451		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522509		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000517542		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000524104		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522962		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521419		ChiTaRS3.1			BE143518	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
3UTR-3UTR	ENST00000559624	ENST00000559624		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
3UTR-intron	ENST00000559624	ENST00000382727		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
3UTR-intron	ENST00000559624	ENST00000263791		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
3UTR-intron	ENST00000559624	ENST00000560648		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
3UTR-intron	ENST00000559624	ENST00000559311		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-3UTR	ENST00000382727	ENST00000559624		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000382727	ENST00000382727		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000382727	ENST00000263791		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000382727	ENST00000560648		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000382727	ENST00000559311		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-3UTR	ENST00000263791	ENST00000559624		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000263791	ENST00000382727		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000263791	ENST00000263791		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000263791	ENST00000560648		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000263791	ENST00000559311		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-3UTR	ENST00000560648	ENST00000559624		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000560648	ENST00000382727		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000560648	ENST00000263791		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000560648	ENST00000560648		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000560648	ENST00000559311		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-3UTR	ENST00000559311	ENST00000559624		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000559311	ENST00000382727		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000559311	ENST00000263791		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000559311	ENST00000560648		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000559311	ENST00000559311		ChiTaRS3.1			AA230218	EIF2AK4	chr15	40266278	+	EIF2AK4	chr15	40266241	-
intron-intron	ENST00000355831	ENST00000465846		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000476204		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000474040		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000467155		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000480872		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000429755		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000492897		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000487849		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000481995		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000460041		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000474324		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000477144		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000466037		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000491264		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000355831	ENST00000494420		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000465846		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000476204		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000474040		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000467155		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000480872		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000429755		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000492897		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000487849		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000481995		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000460041		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000474324		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000477144		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000466037		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000491264		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000343439	ENST00000494420		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000465846		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000476204		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000474040		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000467155		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000480872		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000429755		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000492897		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000487849		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000481995		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000460041		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000474324		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000477144		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000466037		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000491264		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392782	ENST00000494420		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000465846		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000476204		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000474040		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000467155		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000480872		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000429755		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000492897		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000487849		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000481995		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000460041		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000474324		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000477144		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000466037		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000491264		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000392783	ENST00000494420		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000465846		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000476204		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000474040		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000467155		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000480872		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000429755		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000492897		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000487849		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000481995		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000460041		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000474324		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000477144		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000466037		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000491264		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000483316	ENST00000494420		ChiTaRS3.1			BF084738	BAZ2B	chr2	160407392	+	HOXB-AS3	chr17	46676516	+
intron-intron	ENST00000395246	ENST00000395246		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000395246	ENST00000504701		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000395246	ENST00000503291		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000395246	ENST00000360515		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000395246	ENST00000505065		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000504701	ENST00000395246		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000504701	ENST00000504701		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000504701	ENST00000503291		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000504701	ENST00000360515		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000504701	ENST00000505065		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000503291	ENST00000395246		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000503291	ENST00000504701		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000503291	ENST00000503291		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000503291	ENST00000360515		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000503291	ENST00000505065		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000360515	ENST00000395246		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000360515	ENST00000504701		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000360515	ENST00000503291		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000360515	ENST00000360515		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000360515	ENST00000505065		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000505065	ENST00000395246		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000505065	ENST00000504701		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000505065	ENST00000503291		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000505065	ENST00000360515		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000505065	ENST00000505065		ChiTaRS3.1			CV416998	CDC42SE2	chr5	130673764	-	CDC42SE2	chr5	130675586	+
intron-intron	ENST00000312962	ENST00000156109		ChiTaRS3.1			BF376678	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-intron	ENST00000361821	ENST00000156109		ChiTaRS3.1			BF376678	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-intron	ENST00000537964	ENST00000156109		ChiTaRS3.1			BF376678	KRI1	chr19	10671119	+	GPKOW	chrX	48969439	-
intron-intron	ENST00000328879	ENST00000373664		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000328879	ENST00000344359		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000328879	ENST00000598590		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000440659	ENST00000373664		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000440659	ENST00000344359		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000440659	ENST00000598590		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000470335	ENST00000373664		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000470335	ENST00000344359		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000470335	ENST00000598590		ChiTaRS3.1			CD520258	KLHL22	chr22	20836861	-	RBL1	chr20	35662361	-
intron-intron	ENST00000390548	ENST00000258761		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-intron	ENST00000390548	ENST00000433922		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-intron	ENST00000390548	ENST00000432311		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-intron	ENST00000390548	ENST00000452975		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-intron	ENST00000390548	ENST00000405202		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-intron	ENST00000390548	ENST00000407633		ChiTaRS3.1			BU588018	IGHG1	chr14	106444543	-	BZW2	chr7	16693707	+
intron-3UTR	ENST00000408442	ENST00000171887		ChiTaRS3.1			D79968	MIR548G	chr3	99515019	-	TNS1	chr2	218664582	-
intron-intron	ENST00000408442	ENST00000419504		ChiTaRS3.1			D79968	MIR548G	chr3	99515019	-	TNS1	chr2	218664582	-
intron-intron	ENST00000408442	ENST00000430930		ChiTaRS3.1			D79968	MIR548G	chr3	99515019	-	TNS1	chr2	218664582	-
intron-intron	ENST00000408442	ENST00000310858		ChiTaRS3.1			D79968	MIR548G	chr3	99515019	-	TNS1	chr2	218664582	-
intron-intron	ENST00000408442	ENST00000480665		ChiTaRS3.1			D79968	MIR548G	chr3	99515019	-	TNS1	chr2	218664582	-
intron-intron	ENST00000316999	ENST00000301788		ChiTaRS3.1			CB048938	SMAP1	chr6	71428519	-	POLR2G	chr11	62534182	-
intron-intron	ENST00000370452	ENST00000301788		ChiTaRS3.1			CB048938	SMAP1	chr6	71428519	-	POLR2G	chr11	62534182	-
intron-intron	ENST00000370455	ENST00000301788		ChiTaRS3.1			CB048938	SMAP1	chr6	71428519	-	POLR2G	chr11	62534182	-
intron-intron	ENST00000422334	ENST00000301788		ChiTaRS3.1			CB048938	SMAP1	chr6	71428519	-	POLR2G	chr11	62534182	-
intron-3UTR	ENST00000604900	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000604900	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000604900	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-3UTR	ENST00000412716	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-3UTR	ENST00000412716	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000412716	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-3UTR	ENST00000449723	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-3UTR	ENST00000449723	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
3UTR-intron	ENST00000449723	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000549555	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000549555	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549555	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000439799	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000439799	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000439799	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000425012	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000425012	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000425012	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000549732	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000549732	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000549732	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000551534	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000551534	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551534	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000551313	ENST00000354452		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-3UTR	ENST00000551313	ENST00000356073		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000568673		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000457482		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000543082		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000540999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000537578		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000564999		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000568740		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000537856		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000544241		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000561992		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000561831		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000565018		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000570287		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000564228		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000567880		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000566286		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000566279		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000564403		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000398339		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000570177		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000551313	ENST00000563760		ChiTaRS3.1			CB217268	DAZAP2	chr12	51637568	+	TCF4	chr18	52893102	+
intron-intron	ENST00000537690	ENST00000377782		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000537690	ENST00000356876		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000537690	ENST00000351959		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000537690	ENST00000351748		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000537690	ENST00000348333		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000537690	ENST00000461703		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000377782		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000356876		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000351959		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000351748		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000348333		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000281581	ENST00000461703		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000377782		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000356876		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000351959		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000351748		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000348333		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000556996	ENST00000461703		ChiTaRS3.1			AK094488	CCDC175	chr14	60017911	-	TNFRSF25	chr1	6523550	-
intron-intron	ENST00000221543	ENST00000254301		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000221543	ENST00000553755		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000221543	ENST00000554715		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000535102	ENST00000254301		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000535102	ENST00000553755		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000535102	ENST00000554715		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000598789	ENST00000254301		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000598789	ENST00000553755		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-intron	ENST00000598789	ENST00000554715		ChiTaRS3.1			BF754368	TBC1D17	chr19	50388475	+	LGALS3	chr14	55597501	+
intron-3CDS	ENST00000604938	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604938	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604938	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604938	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000604938	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401010	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401010	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401010	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401010	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000401010	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000339388	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000339388	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000339388	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000339388	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000339388	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000369323	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000369323	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000369323	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000369323	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000369323	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000605317	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000605317	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000605317	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000605317	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000605317	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000479926	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000479926	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000479926	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000479926	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000479926	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604894	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604894	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604894	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000604894	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000604894	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401009	ENST00000582337		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401009	ENST00000309902		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401009	ENST00000577538		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-3CDS	ENST00000401009	ENST00000299687		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000401009	ENST00000584235		ChiTaRS3.1			BE838578	NBPF11	chr1	147910544	-	ZNF407	chr18	72343715	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425251	BCR	chr22	23633376	+	ABL1	chr9	133667600	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425251	BCR	chr22	23633376	+	ABL1	chr9	133667600	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425251	BCR	chr22	23633376	+	ABL1	chr9	133667600	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425251	BCR	chr22	23633376	+	ABL1	chr9	133667600	+
intron-intron	ENST00000314393	ENST00000254480		ChiTaRS3.1			CD512498	ZHX2	chr8	123815478	+	SMARCC1	chr3	47661166	+
intron-intron	ENST00000314393	ENST00000425518		ChiTaRS3.1			CD512498	ZHX2	chr8	123815478	+	SMARCC1	chr3	47661166	+
intron-intron	ENST00000306422	ENST00000337019		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000306422	ENST00000366889		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000306422	ENST00000366888		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000306422	ENST00000542669		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000515716	ENST00000337019		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000515716	ENST00000366889		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000515716	ENST00000366888		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000515716	ENST00000542669		ChiTaRS3.1			AI690188	OTP	chr5	76931867	+	PACRG	chr6	163536744	-
intron-intron	ENST00000404360	ENST00000337620		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000404360	ENST00000396386		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000404360	ENST00000409747		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000404360	ENST00000497498		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000405858	ENST00000337620		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000405858	ENST00000396386		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000405858	ENST00000409747		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000405858	ENST00000497498		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000342651	ENST00000337620		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000342651	ENST00000396386		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000342651	ENST00000409747		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000342651	ENST00000497498		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000491565	ENST00000337620		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000491565	ENST00000396386		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000491565	ENST00000409747		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000491565	ENST00000497498		ChiTaRS3.1			BE141848	ZNF12	chr7	6743120	-	CBX3	chr7	26251162	+
intron-intron	ENST00000340437	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000340437	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000340437	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000394888	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000394888	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000394888	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000439958	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000439958	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000439958	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000494016	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000494016	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000494016	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000448745	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000448745	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000448745	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000541963	ENST00000432518		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000541963	ENST00000443912		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000541963	ENST00000445077		ChiTaRS3.1			AW994038	CPSF7	chr11	61171237	+	LINC00693	chr3	28720834	+
intron-intron	ENST00000324342	ENST00000355327		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000324342	ENST00000261862		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000324342	ENST00000357769		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000324342	ENST00000567838		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000255499	ENST00000355327		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000255499	ENST00000261862		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000255499	ENST00000357769		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-intron	ENST00000255499	ENST00000567838		ChiTaRS3.1			AW379188	RNF128	chrX	106019471	-	THSD4	chr15	71556023	+
intron-3CDS	ENST00000347401	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000347401	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000353578	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000295550	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000472056	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000409809	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000346358	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392004	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392003	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541179		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379749		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379747		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379743		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379742		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541481		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000473258	ENST00000497145		ChiTaRS3.1			BE160978	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
5CDS-3UTR	ENST00000266735	ENST00000253024		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
5CDS-3UTR	ENST00000266735	ENST00000341753		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
intron-3UTR	ENST00000553192	ENST00000253024		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
intron-3UTR	ENST00000553192	ENST00000341753		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
intron-3UTR	ENST00000552085	ENST00000253024		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
intron-3UTR	ENST00000552085	ENST00000341753		ChiTaRS3.1			BU564668	SNRPF	chr12	96259829	-	TRIM28	chr19	59062017	+
intron-3CDS	ENST00000355097	ENST00000406697		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000355097	ENST00000328916		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000355097	ENST00000360817		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000355097	ENST00000402681		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3UTR	ENST00000355097	ENST00000495061		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000460614	ENST00000406697		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000460614	ENST00000328916		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000460614	ENST00000360817		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000460614	ENST00000402681		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3UTR	ENST00000460614	ENST00000495061		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000312665	ENST00000406697		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000312665	ENST00000328916		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000312665	ENST00000360817		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3CDS	ENST00000312665	ENST00000402681		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-3UTR	ENST00000312665	ENST00000495061		ChiTaRS3.1			AA583398	ENTPD2	chr9	139942662	+	C1S	chr12	7175022	-
intron-intron	ENST00000269080	ENST00000325110		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
intron-intron	ENST00000269080	ENST00000433297		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
intron-intron	ENST00000430352	ENST00000325110		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
intron-intron	ENST00000430352	ENST00000433297		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
intron-intron	ENST00000586539	ENST00000325110		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
intron-intron	ENST00000586539	ENST00000433297		ChiTaRS3.1			BF476718	ABCA8	chr17	66863593	+	HMGCS1	chr5	43308876	+
In-frame	ENST00000304858	ENST00000304858		ChiTaRS3.1			AU142388	HSPA4	chr5	132435314	+	HSPA4	chr5	132403121	+
5CDS-intron	ENST00000304858	ENST00000504328		ChiTaRS3.1			AU142388	HSPA4	chr5	132435314	+	HSPA4	chr5	132403121	+
intron-3CDS	ENST00000504328	ENST00000304858		ChiTaRS3.1			AU142388	HSPA4	chr5	132435314	+	HSPA4	chr5	132403121	+
intron-intron	ENST00000504328	ENST00000504328		ChiTaRS3.1			AU142388	HSPA4	chr5	132435314	+	HSPA4	chr5	132403121	+
5CDS-intron	ENST00000387069	ENST00000537956		ChiTaRS3.1			DA339878	RNU11	chr1	28975250	+	ZNF26	chr?	100035	-
5CDS-intron	ENST00000387069	ENST00000328654		ChiTaRS3.1			DA339878	RNU11	chr1	28975250	+	ZNF26	chr?	100035	-
5CDS-intron	ENST00000387069	ENST00000534834		ChiTaRS3.1			DA339878	RNU11	chr1	28975250	+	ZNF26	chr?	100035	-
5CDS-intron	ENST00000387069	ENST00000391574		ChiTaRS3.1			DA339878	RNU11	chr1	28975250	+	ZNF26	chr?	100035	-
Frame-shit	ENST00000415149	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000415149	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000402543	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000325805	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000416476	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000416476	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000406780	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000415149		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000402543		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000325805		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000416476		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000406780		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3UTR	ENST00000473542	ENST00000473542		ChiTaRS3.1			BI032908	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-intron	ENST00000539437	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000539437	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000539437	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000539437	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000539437	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268151	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268151	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268151	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268151	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268151	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268150	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268150	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268150	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268150	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000268150	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000566497	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000566497	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000566497	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000566497	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000566497	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000542878	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000542878	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000542878	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000542878	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000542878	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000559997	ENST00000394417		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000559997	ENST00000467648		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000559997	ENST00000487469		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000559997	ENST00000337130		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
intron-intron	ENST00000559997	ENST00000445915		ChiTaRS3.1			CA314258	MFGE8	chr15	89442382	+	UGP2	chr2	64094006	-
5UTR-3CDS	ENST00000359511	ENST00000368301		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000361308		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000347559		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000368300		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000368299		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000448611		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000368297		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000473598		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000359511	ENST00000392353		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-intron	ENST00000359511	ENST00000496738		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000368301		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000361308		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000347559		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000368300		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000368299		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000448611		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000368297		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000473598		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-3CDS	ENST00000423538	ENST00000392353		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5UTR-intron	ENST00000423538	ENST00000496738		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000368301		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000361308		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000347559		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000368300		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000368299		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000448611		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000368297		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000473598		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-3CDS	ENST00000469537	ENST00000392353		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
intron-intron	ENST00000469537	ENST00000496738		ChiTaRS3.1			BG339598	SLC25A44	chr1	156164038	+	LMNA	chr1	156100406	+
5CDS-5UTR	ENST00000370551	ENST00000590966		ChiTaRS3.1			BF947708	HS2ST1	chr1	87380768	+	KCNJ2-AS1	chr17	68165150	-
5CDS-5UTR	ENST00000370550	ENST00000590966		ChiTaRS3.1			BF947708	HS2ST1	chr1	87380768	+	KCNJ2-AS1	chr17	68165150	-
intron-5UTR	ENST00000356813	ENST00000590966		ChiTaRS3.1			BF947708	HS2ST1	chr1	87380768	+	KCNJ2-AS1	chr17	68165150	-
intron-intron	ENST00000395246	ENST00000395246		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000504701		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000503291		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000360515		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000395246	ENST00000505065		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000395246		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000504701		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000503291		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000360515		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000504701	ENST00000505065		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000395246		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000504701		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000503291		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000360515		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000503291	ENST00000505065		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000395246		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000504701		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000503291		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000360515		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360515	ENST00000505065		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000395246		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000504701		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000503291		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000360515		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000505065	ENST00000505065		ChiTaRS3.1			BE143688	CDC42SE2	chr5	130693401	+	CDC42SE2	chr5	130692760	+
intron-intron	ENST00000360909	ENST00000360909		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000360909	ENST00000351081		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000360909	ENST00000395125		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000360909	ENST00000556135		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000360909	ENST00000553966		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000351081	ENST00000360909		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000351081	ENST00000351081		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000351081	ENST00000395125		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000351081	ENST00000556135		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000351081	ENST00000553966		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000395125	ENST00000360909		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000395125	ENST00000351081		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000395125	ENST00000395125		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000395125	ENST00000556135		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000395125	ENST00000553966		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000556135	ENST00000360909		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000556135	ENST00000351081		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000556135	ENST00000395125		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000556135	ENST00000556135		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000556135	ENST00000553966		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000553966	ENST00000360909		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000553966	ENST00000351081		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000553966	ENST00000395125		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000553966	ENST00000556135		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000553966	ENST00000553966		ChiTaRS3.1			BF762998	DAAM1	chr14	59656778	-	DAAM1	chr14	59656419	+
intron-intron	ENST00000306726	ENST00000367612		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-intron	ENST00000306726	ENST00000609928		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-5UTR	ENST00000306726	ENST00000482587		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-intron	ENST00000564970	ENST00000367612		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-intron	ENST00000564970	ENST00000609928		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-5UTR	ENST00000564970	ENST00000482587		ChiTaRS3.1			AK126088	PTPN9	chr15	75767662	+	TOR1AIP2	chr1	179831838	-
intron-intron	ENST00000274376	ENST00000274376		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000274376	ENST00000456692		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000274376	ENST00000512763		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000274376	ENST00000506290		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000456692	ENST00000274376		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000456692	ENST00000456692		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000456692	ENST00000512763		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000456692	ENST00000506290		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000512763	ENST00000274376		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000512763	ENST00000456692		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000512763	ENST00000512763		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000512763	ENST00000506290		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000506290	ENST00000274376		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000506290	ENST00000456692		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000506290	ENST00000512763		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
intron-intron	ENST00000506290	ENST00000506290		ChiTaRS3.1			AA649728	RASA1	chr5	86682912	-	RASA1	chr5	86682893	+
3UTR-3UTR	ENST00000558401	ENST00000558401		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-intron	ENST00000558401	ENST00000559916		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-intron	ENST00000558401	ENST00000544417		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-3UTR	ENST00000558401	ENST00000559220		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-3UTR	ENST00000559916	ENST00000558401		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-intron	ENST00000559916	ENST00000559916		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-intron	ENST00000559916	ENST00000544417		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-3UTR	ENST00000559916	ENST00000559220		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-3UTR	ENST00000544417	ENST00000558401		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-intron	ENST00000544417	ENST00000559916		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-intron	ENST00000544417	ENST00000544417		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-3UTR	ENST00000544417	ENST00000559220		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-3UTR	ENST00000559220	ENST00000558401		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-intron	ENST00000559220	ENST00000559916		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-intron	ENST00000559220	ENST00000544417		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
3UTR-3UTR	ENST00000559220	ENST00000559220		ChiTaRS3.1			BI092058	B2M	chr15	45010215	-	B2M	chr15	45010240	+
intron-intron	ENST00000398532	ENST00000398532		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000398532	ENST00000577454		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000398532	ENST00000578648		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000398532	ENST00000579565		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
3UTR-intron	ENST00000577454	ENST00000398532		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
3UTR-intron	ENST00000577454	ENST00000577454		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
3UTR-intron	ENST00000577454	ENST00000578648		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
3UTR-intron	ENST00000577454	ENST00000579565		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000578648	ENST00000398532		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000578648	ENST00000577454		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000578648	ENST00000578648		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000578648	ENST00000579565		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000579565	ENST00000398532		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000579565	ENST00000577454		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000579565	ENST00000578648		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000579565	ENST00000579565		ChiTaRS3.1			AA558238	MSL1	chr17	38286488	+	MSL1	chr17	38286560	-
intron-intron	ENST00000357674	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000357674	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000314062	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000346964	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000419354	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000452595	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000422288	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000448528	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000443183	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000450955	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000392382	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000552276		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000435558		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000551178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000547178		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000225328		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000345901		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000552050		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
intron-intron	ENST00000485409	ENST00000550772		ChiTaRS3.1			BQ878018	DLG1	chr3	196867020	-	P2RX5	chr17	3572117	+
5CDS-intron	ENST00000544907	ENST00000442092		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000266022		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000443081		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000539992		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000441115		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000422955		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000544907	ENST00000421682		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000442092		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000266022		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000443081		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000539992		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000441115		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000422955		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
5CDS-intron	ENST00000226225	ENST00000421682		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000442092		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000266022		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000443081		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000539992		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000441115		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000422955		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
3UTR-intron	ENST00000583213	ENST00000421682		ChiTaRS3.1			BG010508	TNFAIP1	chr17	26671396	-	RBM6	chr3	50099344	+
intron-3UTR	ENST00000247087	ENST00000233143		ChiTaRS3.1			BC042058	AHDC1	chr1	27877611	-	TMSB10	chr2	85133697	+
intron-3UTR	ENST00000374011	ENST00000233143		ChiTaRS3.1			BC042058	AHDC1	chr1	27877611	-	TMSB10	chr2	85133697	+
intron-3UTR	ENST00000480033	ENST00000233143		ChiTaRS3.1			BC042058	AHDC1	chr1	27877611	-	TMSB10	chr2	85133697	+
3UTR-3CDS	ENST00000262919	ENST00000373566		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-3CDS	ENST00000262919	ENST00000373563		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-3CDS	ENST00000262919	ENST00000409480		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-3CDS	ENST00000262919	ENST00000409547		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-3CDS	ENST00000262919	ENST00000409196		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-3CDS	ENST00000262919	ENST00000409451		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-intron	ENST00000262919	ENST00000482666		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
3UTR-intron	ENST00000262919	ENST00000452341		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000373566		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000373563		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000409480		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000409547		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000409196		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000446916	ENST00000409451		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-intron	ENST00000446916	ENST00000482666		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-intron	ENST00000446916	ENST00000452341		ChiTaRS3.1			AA367938	ATRN	chr20	3628230	-	GIGYF2	chr2	233655492	+
intron-3CDS	ENST00000353383	ENST00000338854		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000353383	ENST00000395757		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000353383	ENST00000355815		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000353383	ENST00000261646		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000353383	ENST00000435530		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000353383	ENST00000583732		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000489697	ENST00000338854		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000489697	ENST00000395757		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000489697	ENST00000355815		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000489697	ENST00000261646		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000489697	ENST00000435530		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000489697	ENST00000583732		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000261641	ENST00000338854		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000261641	ENST00000395757		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000261641	ENST00000355815		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-3CDS	ENST00000261641	ENST00000261646		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000261641	ENST00000435530		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000261641	ENST00000583732		ChiTaRS3.1			BM975798	RAI1	chr17	17721040	+	SREBF1	chr17	17720412	+
intron-intron	ENST00000290231	ENST00000502773		ChiTaRS3.1			AV719328	NCOA5	chr20	44705634	+	PDGFC	chr4	157796994	+
intron-intron	ENST00000290231	ENST00000541126		ChiTaRS3.1			AV719328	NCOA5	chr20	44705634	+	PDGFC	chr4	157796994	+
intron-intron	ENST00000290231	ENST00000422544		ChiTaRS3.1			AV719328	NCOA5	chr20	44705634	+	PDGFC	chr4	157796994	+
intron-intron	ENST00000290231	ENST00000504672		ChiTaRS3.1			AV719328	NCOA5	chr20	44705634	+	PDGFC	chr4	157796994	+
intron-intron	ENST00000290231	ENST00000542208		ChiTaRS3.1			AV719328	NCOA5	chr20	44705634	+	PDGFC	chr4	157796994	+
5CDS-intron	ENST00000596304	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596304	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596304	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596304	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596304	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000430157	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000430157	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000430157	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000430157	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000430157	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596273	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596273	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596273	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596273	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000596273	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000442744	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000442744	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000442744	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000442744	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000442744	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595683	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595683	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595683	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595683	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595683	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595158	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595158	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595158	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595158	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000595158	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000598780	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000598780	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000598780	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000598780	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000598780	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599551	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599551	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599551	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599551	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599551	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000597451	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000597451	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000597451	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000597451	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000597451	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599595	ENST00000396353		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599595	ENST00000396355		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599595	ENST00000396354		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599595	ENST00000342673		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
5CDS-intron	ENST00000599595	ENST00000571896		ChiTaRS3.1			BQ016698	UBA52	chr19	18684523	-	NDE1	chr16	15797723	-
intron-intron	ENST00000496112	ENST00000496112		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-intron	ENST00000496112	ENST00000447123		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-3UTR	ENST00000496112	ENST00000223369		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-intron	ENST00000447123	ENST00000496112		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-intron	ENST00000447123	ENST00000447123		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-3UTR	ENST00000447123	ENST00000223369		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
3UTR-intron	ENST00000223369	ENST00000496112		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
3UTR-intron	ENST00000223369	ENST00000447123		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
3UTR-3UTR	ENST00000223369	ENST00000223369		ChiTaRS3.1			BF851378	YKT6	chr7	44253487	+	YKT6	chr7	44253643	-
intron-3UTR	ENST00000210313	ENST00000210313		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000210313	ENST00000373904		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000210313	ENST00000604848		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-3UTR	ENST00000373904	ENST00000210313		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000373904	ENST00000373904		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000373904	ENST00000604848		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-3UTR	ENST00000604848	ENST00000210313		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000604848	ENST00000373904		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-intron	ENST00000604848	ENST00000604848		ChiTaRS3.1			BI005318	PSMD5	chr9	123579560	+	PSMD5	chr9	123579355	-
intron-3CDS	ENST00000369825	ENST00000322723		ChiTaRS3.1			DA952888	USMG5	chr10	105152019	-	NCL	chr2	232325256	-
intron-3CDS	ENST00000369811	ENST00000322723		ChiTaRS3.1			DA952888	USMG5	chr10	105152019	-	NCL	chr2	232325256	-
intron-3CDS	ENST00000369815	ENST00000322723		ChiTaRS3.1			DA952888	USMG5	chr10	105152019	-	NCL	chr2	232325256	-
intron-3CDS	ENST00000337003	ENST00000322723		ChiTaRS3.1			DA952888	USMG5	chr10	105152019	-	NCL	chr2	232325256	-
intron-3CDS	ENST00000309579	ENST00000322723		ChiTaRS3.1			DA952888	USMG5	chr10	105152019	-	NCL	chr2	232325256	-
intron-3CDS	ENST00000216181	ENST00000382369		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000216181	ENST00000360321		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000216181	ENST00000400269		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000475726	ENST00000382369		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000475726	ENST00000360321		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000475726	ENST00000400269		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000401701	ENST00000382369		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000401701	ENST00000360321		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-3CDS	ENST00000401701	ENST00000400269		ChiTaRS3.1			BQ335488	MYH9	chr22	36696243	+	C20orf96	chr20	259930	+
intron-intron	ENST00000370192	ENST00000540691		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000539106		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000222307		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-3UTR	ENST00000370192	ENST00000600796		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000601630		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000599000		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000595073		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000599319		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-5UTR	ENST00000370192	ENST00000602094		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000370192	ENST00000598830		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000540691		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000539106		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000222307		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-3UTR	ENST00000474241	ENST00000600796		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000601630		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000599000		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000595073		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000599319		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-5UTR	ENST00000474241	ENST00000602094		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000474241	ENST00000598830		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000540691		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000539106		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000222307		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-3UTR	ENST00000423006	ENST00000600796		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000601630		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000599000		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000595073		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000599319		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-5UTR	ENST00000423006	ENST00000602094		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000423006	ENST00000598830		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000540691		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000539106		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000222307		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-3UTR	ENST00000306031	ENST00000600796		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000601630		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000599000		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000595073		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000599319		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-5UTR	ENST00000306031	ENST00000602094		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-intron	ENST00000306031	ENST00000598830		ChiTaRS3.1			CN412218	DPYD	chr1	97929547	+	KXD1	chr19	18670041	+
intron-3CDS	ENST00000390168	ENST00000434271		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000353047		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000530640		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000531089		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000453527		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000415599		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000345125		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000533455		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000534510		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-5UTR	ENST00000390168	ENST00000525076		ChiTaRS3.1			AI110608	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3UTR	ENST00000515518	ENST00000261497		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-3UTR	ENST00000515518	ENST00000537526		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-intron	ENST00000515518	ENST00000455117		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-3UTR	ENST00000429839	ENST00000261497		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-3UTR	ENST00000429839	ENST00000537526		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-intron	ENST00000429839	ENST00000455117		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-3UTR	ENST00000455884	ENST00000261497		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-3UTR	ENST00000455884	ENST00000537526		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
intron-intron	ENST00000455884	ENST00000455117		ChiTaRS3.1			BF995298	TMEM232	chr5	110036335	+	USP22	chr17	20905368	+
3UTR-3CDS	ENST00000406644	ENST00000406644		ChiTaRS3.1			BG432348	TEF	chr22	41794833	+	TEF	chr22	41783648	+
3UTR-3CDS	ENST00000406644	ENST00000266304		ChiTaRS3.1			BG432348	TEF	chr22	41794833	+	TEF	chr22	41783648	+
3UTR-3CDS	ENST00000266304	ENST00000406644		ChiTaRS3.1			BG432348	TEF	chr22	41794833	+	TEF	chr22	41783648	+
3UTR-3CDS	ENST00000266304	ENST00000266304		ChiTaRS3.1			BG432348	TEF	chr22	41794833	+	TEF	chr22	41783648	+
intron-intron	ENST00000371900	ENST00000371900		ChiTaRS3.1			BU685498	SLC6A14	chrX	115580157	-	SLC6A14	chrX	115580202	+
intron-intron	ENST00000371900	ENST00000463626		ChiTaRS3.1			BU685498	SLC6A14	chrX	115580157	-	SLC6A14	chrX	115580202	+
intron-intron	ENST00000463626	ENST00000371900		ChiTaRS3.1			BU685498	SLC6A14	chrX	115580157	-	SLC6A14	chrX	115580202	+
intron-intron	ENST00000463626	ENST00000463626		ChiTaRS3.1			BU685498	SLC6A14	chrX	115580157	-	SLC6A14	chrX	115580202	+
intron-3UTR	ENST00000410042	ENST00000296674		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000410042	ENST00000510210		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000410042	ENST00000512493		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000410042	ENST00000510019		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000410042	ENST00000507980		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000410042	ENST00000503605		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000410042	ENST00000511844		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000338148	ENST00000296674		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000338148	ENST00000510210		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000338148	ENST00000512493		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000338148	ENST00000510019		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000338148	ENST00000507980		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000338148	ENST00000503605		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000338148	ENST00000511844		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000409145	ENST00000296674		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000409145	ENST00000510210		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000409145	ENST00000512493		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000409145	ENST00000510019		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000409145	ENST00000507980		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000409145	ENST00000503605		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000409145	ENST00000511844		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000465432	ENST00000296674		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000465432	ENST00000510210		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000465432	ENST00000512493		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000465432	ENST00000510019		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-3UTR	ENST00000465432	ENST00000507980		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000465432	ENST00000503605		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
intron-intron	ENST00000465432	ENST00000511844		ChiTaRS3.1			CB217558	MRPL30	chr2	99879071	-	RPS23	chr5	81571879	+
3UTR-3CDS	ENST00000455600	ENST00000455600		ChiTaRS3.1			CD368418	RUSC2	chr9	35561510	-	RUSC2	chr9	35560549	+
3UTR-intron	ENST00000455600	ENST00000468041		ChiTaRS3.1			CD368418	RUSC2	chr9	35561510	-	RUSC2	chr9	35560549	+
intron-3CDS	ENST00000468041	ENST00000455600		ChiTaRS3.1			CD368418	RUSC2	chr9	35561510	-	RUSC2	chr9	35560549	+
intron-intron	ENST00000468041	ENST00000468041		ChiTaRS3.1			CD368418	RUSC2	chr9	35561510	-	RUSC2	chr9	35560549	+
intron-intron	ENST00000270001	ENST00000378609		ChiTaRS3.1			H53458	ZFP14	chr19	36827344	-	GNB1	chr1	1751530	-
intron-intron	ENST00000270001	ENST00000472614		ChiTaRS3.1			H53458	ZFP14	chr19	36827344	-	GNB1	chr1	1751530	-
intron-intron	ENST00000589280	ENST00000378609		ChiTaRS3.1			H53458	ZFP14	chr19	36827344	-	GNB1	chr1	1751530	-
intron-intron	ENST00000589280	ENST00000472614		ChiTaRS3.1			H53458	ZFP14	chr19	36827344	-	GNB1	chr1	1751530	-
5UTR-3UTR	ENST00000274341	ENST00000313949		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000274341	ENST00000371098		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000274341	ENST00000371075		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000274341	ENST00000371100		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000371099		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000371102		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-3UTR	ENST00000274341	ENST00000464624		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000306120		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000371095		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000371085		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000354359		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000265620		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000306090		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
5UTR-intron	ENST00000274341	ENST00000371081		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000514416	ENST00000313949		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000514416	ENST00000371098		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000514416	ENST00000371075		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000514416	ENST00000371100		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000371099		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000371102		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-3UTR	ENST00000514416	ENST00000464624		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000306120		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000371095		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000371085		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000354359		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000265620		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000306090		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
intron-intron	ENST00000514416	ENST00000371081		ChiTaRS3.1			CN403028	HAPLN1	chr5	83016606	-	GNAS	chr20	57470665	+
3UTR-3UTR	ENST00000579649	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
intron-3UTR	ENST00000582380	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
3UTR-3UTR	ENST00000577222	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
3UTR-3UTR	ENST00000347512	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
3UTR-3UTR	ENST00000579446	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
3UTR-3UTR	ENST00000394580	ENST00000233813		ChiTaRS3.1			AI497618	RPL36	chr19	5691635	-	IGFBP5	chr2	217541449	+
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			AI963928	MEG3	chr14	101316059	-	MEG3	chr14	101318950	-
intron-3UTR	ENST00000395699	ENST00000395699		ChiTaRS3.1			BE006618	PURB	chr7	44916735	+	PURB	chr7	44919906	-
intron-intron	ENST00000399410	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399410	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000349029	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000351154	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000399408	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000345148	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000346370	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000399410		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000349029		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000351154		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000399408		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000345148		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000346370		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
intron-intron	ENST00000576557	ENST00000576557		ChiTaRS3.1			BF836418	ABCC1	chr16	16117027	-	ABCC1	chr16	16124973	+
In-frame	ENST00000366730	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366730	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366730	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366730	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366730	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366730	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000391865	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000391865	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000391865	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000391865	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000391865	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000391865	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366726	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366726	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366726	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366726	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366726	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366726	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000312726	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000312726	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000312726	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000312726	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000312726	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000312726	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-3CDS	ENST00000366728	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-3CDS	ENST00000366728	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-3CDS	ENST00000366728	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-3CDS	ENST00000366728	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-3CDS	ENST00000366728	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
intron-intron	ENST00000366728	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366723	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366723	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366723	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366723	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366723	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366723	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366722	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366722	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366722	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366722	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
Frame-shit	ENST00000366722	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366722	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366721	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366721	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366721	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366721	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366721	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366721	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366718	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366718	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366718	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366718	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366718	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366718	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3CDS	ENST00000470040	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3CDS	ENST00000470040	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3CDS	ENST00000470040	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3CDS	ENST00000470040	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3CDS	ENST00000470040	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-intron	ENST00000470040	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366716	ENST00000452825		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366716	ENST00000375401		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366716	ENST00000404049		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366716	ENST00000375379		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
In-frame	ENST00000366716	ENST00000375383		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
5CDS-intron	ENST00000366716	ENST00000465402		ChiTaRS3.1			BE939838	GUK1	chr1	228336098	+	KDM5C	chrX	53228198	+
3UTR-3UTR	ENST00000367993	ENST00000571816		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000367993	ENST00000572430		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000367993	ENST00000262482		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000367993	ENST00000575111		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000367993	ENST00000576229		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-intron	ENST00000367993	ENST00000570492		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000392179	ENST00000571816		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000392179	ENST00000572430		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000392179	ENST00000262482		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000392179	ENST00000575111		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000392179	ENST00000576229		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-intron	ENST00000392179	ENST00000570492		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000476409	ENST00000571816		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000476409	ENST00000572430		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000476409	ENST00000262482		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000476409	ENST00000575111		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000476409	ENST00000576229		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-intron	ENST00000476409	ENST00000570492		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000465923	ENST00000571816		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000465923	ENST00000572430		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000465923	ENST00000262482		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000465923	ENST00000575111		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-3UTR	ENST00000465923	ENST00000576229		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
3UTR-intron	ENST00000465923	ENST00000570492		ChiTaRS3.1			N51398	NDUFS2	chr1	161184079	-	RNF167	chr17	4848320	+
intron-3UTR	ENST00000264670	ENST00000330871		ChiTaRS3.1			AW362678	NSUN2	chr5	6601377	-	SOCS3	chr17	76352950	+
intron-3UTR	ENST00000539938	ENST00000330871		ChiTaRS3.1			AW362678	NSUN2	chr5	6601377	-	SOCS3	chr17	76352950	+
intron-3UTR	ENST00000506139	ENST00000330871		ChiTaRS3.1			AW362678	NSUN2	chr5	6601377	-	SOCS3	chr17	76352950	+
intron-3UTR	ENST00000505264	ENST00000330871		ChiTaRS3.1			AW362678	NSUN2	chr5	6601377	-	SOCS3	chr17	76352950	+
intron-intron	ENST00000449592	ENST00000449592		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000449592	ENST00000540377		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000449592	ENST00000538055		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000540377	ENST00000449592		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000540377	ENST00000540377		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000540377	ENST00000538055		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000538055	ENST00000449592		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000538055	ENST00000540377		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000538055	ENST00000538055		ChiTaRS3.1			BF326308	TMEM120B	chr12	122203670	-	TMEM120B	chr12	122203611	+
intron-intron	ENST00000443149	ENST00000443149		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000443149	ENST00000399933		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000443149	ENST00000381461		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000399933	ENST00000443149		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000399933	ENST00000399933		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000399933	ENST00000381461		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000381461	ENST00000443149		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000381461	ENST00000399933		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
intron-intron	ENST00000381461	ENST00000381461		ChiTaRS3.1			AA287088	KIAA2026	chr9	5968186	+	KIAA2026	chr9	5954051	+
3UTR-5UTR	ENST00000394155	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000520468		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000297564		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000520271		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000517682		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000524245		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000522940		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000518171		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000523016		ChiTaRS3.1			BF825718	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000366603	ENST00000435667		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000440156		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000455077		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000437179		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000388777		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000454389		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000446700		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000425128		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000366603	ENST00000445684		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000366603	ENST00000428386		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000366603	ENST00000295736		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000435667		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000440156		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000455077		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000437179		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000388777		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000454389		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000446700		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000425128		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000264183	ENST00000445684		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000264183	ENST00000428386		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000264183	ENST00000295736		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000435667		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000440156		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000455077		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000437179		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000388777		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000454389		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000446700		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000425128		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000349213	ENST00000445684		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000349213	ENST00000428386		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000349213	ENST00000295736		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000435667		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000440156		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000455077		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000437179		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000388777		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000454389		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000446700		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000425128		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-intron	ENST00000494543	ENST00000445684		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000494543	ENST00000428386		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3UTR	ENST00000494543	ENST00000295736		ChiTaRS3.1			BF844858	ARID4B	chr1	235433741	+	SLC4A7	chr3	27415037	-
intron-3CDS	ENST00000330154	ENST00000330154		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000330154	ENST00000328766		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000330154	ENST00000356824		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-intron	ENST00000330154	ENST00000467416		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000328766	ENST00000330154		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000328766	ENST00000328766		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000328766	ENST00000356824		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-intron	ENST00000328766	ENST00000467416		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000356824	ENST00000330154		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000356824	ENST00000328766		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000356824	ENST00000356824		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-intron	ENST00000356824	ENST00000467416		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000467416	ENST00000330154		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000467416	ENST00000328766		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-3CDS	ENST00000467416	ENST00000356824		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-intron	ENST00000467416	ENST00000467416		ChiTaRS3.1			BE843388	ARMCX2	chrX	100910575	+	ARMCX2	chrX	100910798	-
intron-intron	ENST00000293872	ENST00000293872		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000293872	ENST00000337351		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000293872	ENST00000397783		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000293872	ENST00000397780		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000293872	ENST00000494366		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000337351	ENST00000293872		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000337351	ENST00000337351		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000337351	ENST00000397783		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000337351	ENST00000397780		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000337351	ENST00000494366		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397783	ENST00000293872		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397783	ENST00000337351		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397783	ENST00000397783		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397783	ENST00000397780		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397783	ENST00000494366		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397780	ENST00000293872		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397780	ENST00000337351		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397780	ENST00000397783		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397780	ENST00000397780		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000397780	ENST00000494366		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000494366	ENST00000293872		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000494366	ENST00000337351		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000494366	ENST00000397783		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000494366	ENST00000397780		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-intron	ENST00000494366	ENST00000494366		ChiTaRS3.1			BE171438	LUC7L	chr16	277651	-	LUC7L	chr16	277775	+
intron-3UTR	ENST00000528080	ENST00000528080		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000528080	ENST00000527813		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000528080	ENST00000533723		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-3UTR	ENST00000527813	ENST00000528080		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000527813	ENST00000527813		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000527813	ENST00000533723		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-3UTR	ENST00000533723	ENST00000528080		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000533723	ENST00000527813		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-intron	ENST00000533723	ENST00000533723		ChiTaRS3.1			CB241148	TMEM41B	chr11	9303100	+	TMEM41B	chr11	9303160	-
intron-3CDS	ENST00000294740	ENST00000294740		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000294740	ENST00000367353		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000294740	ENST00000367352		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367353	ENST00000294740		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367353	ENST00000367353		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367353	ENST00000367352		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367352	ENST00000294740		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367352	ENST00000367353		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-3CDS	ENST00000367352	ENST00000367352		ChiTaRS3.1			BM979458	ZNF281	chr1	200376235	+	ZNF281	chr1	200376806	-
intron-intron	ENST00000393469	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000393469	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000393469	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000393469	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000393469	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000393469	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000423114	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000469902	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000314584	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000430155	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000393469		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000423114		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000469902		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000314584		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000430155		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000465475	ENST00000465475		ChiTaRS3.1			H89198	SLC12A8	chr3	124949966	+	SLC12A8	chr3	124950019	-
intron-intron	ENST00000529022	ENST00000529022		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
intron-3UTR	ENST00000529022	ENST00000292524		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
intron-intron	ENST00000529022	ENST00000528528		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000292524	ENST00000529022		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-3UTR	ENST00000292524	ENST00000292524		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000292524	ENST00000528528		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000528528	ENST00000529022		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-3UTR	ENST00000528528	ENST00000292524		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
3UTR-intron	ENST00000528528	ENST00000528528		ChiTaRS3.1			CA503138	LRRC14	chr8	145749047	-	LRRC14	chr8	145748962	+
intron-intron	ENST00000366787	ENST00000366787		ChiTaRS3.1			AI954258	THBS2	chr6	169644422	+	THBS2	chr6	169641560	+
intron-intron	ENST00000366787	ENST00000488355		ChiTaRS3.1			AI954258	THBS2	chr6	169644422	+	THBS2	chr6	169641560	+
intron-intron	ENST00000488355	ENST00000366787		ChiTaRS3.1			AI954258	THBS2	chr6	169644422	+	THBS2	chr6	169641560	+
intron-intron	ENST00000488355	ENST00000488355		ChiTaRS3.1			AI954258	THBS2	chr6	169644422	+	THBS2	chr6	169641560	+
3UTR-5UTR	ENST00000169298	ENST00000169298		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-5UTR	ENST00000169298	ENST00000457772		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000169298	ENST00000448044		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000169298	ENST00000487031		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-5UTR	ENST00000457772	ENST00000169298		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-5UTR	ENST00000457772	ENST00000457772		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000457772	ENST00000448044		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000457772	ENST00000487031		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-5UTR	ENST00000448044	ENST00000169298		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-5UTR	ENST00000448044	ENST00000457772		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000448044	ENST00000448044		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
3UTR-intron	ENST00000448044	ENST00000487031		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
intron-5UTR	ENST00000487031	ENST00000169298		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
intron-5UTR	ENST00000487031	ENST00000457772		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
intron-intron	ENST00000487031	ENST00000448044		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
intron-intron	ENST00000487031	ENST00000487031		ChiTaRS3.1			DR002138	ST6GAL1	chr3	186795245	+	ST6GAL1	chr3	186681643	+
intron-intron	ENST00000396761	ENST00000308624		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000396761	ENST00000407292		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000396761	ENST00000467759		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409618	ENST00000308624		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409618	ENST00000407292		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409618	ENST00000467759		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000361242	ENST00000308624		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000361242	ENST00000407292		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000361242	ENST00000467759		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409422	ENST00000308624		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409422	ENST00000407292		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000409422	ENST00000467759		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000488833	ENST00000308624		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000488833	ENST00000407292		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
intron-intron	ENST00000488833	ENST00000467759		ChiTaRS3.1			T07088	ATG9A	chr2	220088872	+	SNTG2	chr2	1182673	+
5CDS-intron	ENST00000254108	ENST00000498485		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000254108	ENST00000259457		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000254108	ENST00000536392		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000380244	ENST00000498485		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000380244	ENST00000259457		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000380244	ENST00000536392		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000568685	ENST00000498485		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000568685	ENST00000259457		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-intron	ENST00000568685	ENST00000536392		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
3UTR-intron	ENST00000474990	ENST00000498485		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
3UTR-intron	ENST00000474990	ENST00000259457		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
3UTR-intron	ENST00000474990	ENST00000536392		ChiTaRS3.1			AW449088	FUS	chr16	31202347	-	PSMB7	chr9	127117073	-
5CDS-5UTR	ENST00000332149	ENST00000319349		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000393664		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000538265		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000545954		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000545089		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000332149	ENST00000591713		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000332149	ENST00000586826		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000319349		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000393664		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000538265		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000545954		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000545089		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000398585	ENST00000591713		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000398585	ENST00000586826		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000319349		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000393664		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000538265		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000545954		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000545089		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-5UTR	ENST00000458356	ENST00000591713		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5CDS-intron	ENST00000458356	ENST00000586826		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000319349		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000393664		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000538265		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000545954		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000545089		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-5UTR	ENST00000497881	ENST00000591713		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
5UTR-intron	ENST00000497881	ENST00000586826		ChiTaRS3.1			EU693079	TMPRSS2	chr21	42870044	-	ETV4	chr17	41623036	-
Frame-shit	ENST00000294785	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000294785	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000294785	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000294785	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000294785	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000294785	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368063	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368063	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368063	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368063	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000368063	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000368063	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000535857	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000535857	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000535857	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000535857	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000535857	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000535857	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000392212	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000392212	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000392212	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000392212	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000392212	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000392212	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3CDS	ENST00000459963	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3CDS	ENST00000459963	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3CDS	ENST00000459963	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3CDS	ENST00000459963	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3UTR	ENST00000459963	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
3UTR-3UTR	ENST00000459963	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368065	ENST00000294785		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368065	ENST00000368063		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368065	ENST00000535857		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
Frame-shit	ENST00000368065	ENST00000392212		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000368065	ENST00000459963		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
5CDS-3UTR	ENST00000368065	ENST00000368065		ChiTaRS3.1			AW993098	NCSTN	chr1	160326091	-	NCSTN	chr1	160325693	+
intron-intron	ENST00000375592	ENST00000414786		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-intron	ENST00000375592	ENST00000445220		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-intron	ENST00000375592	ENST00000262795		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-intron	ENST00000478089	ENST00000414786		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-intron	ENST00000478089	ENST00000445220		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-intron	ENST00000478089	ENST00000262795		ChiTaRS3.1			BF155428	FBXO42	chr1	16665992	+	SHANK3	chr22	51122465	+
intron-3UTR	ENST00000299314	ENST00000299314		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000299314	ENST00000549940		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000299314	ENST00000392919		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000299314	ENST00000549165		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-3UTR	ENST00000549940	ENST00000299314		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549940	ENST00000549940		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549940	ENST00000392919		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549940	ENST00000549165		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-3UTR	ENST00000392919	ENST00000299314		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000392919	ENST00000549940		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000392919	ENST00000392919		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000392919	ENST00000549165		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-3UTR	ENST00000549165	ENST00000299314		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549165	ENST00000549940		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549165	ENST00000392919		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
intron-intron	ENST00000549165	ENST00000549165		ChiTaRS3.1			CA503168	GNPTAB	chr12	102139497	+	GNPTAB	chr12	102139545	-
5UTR-5UTR	ENST00000331825	ENST00000331825		ChiTaRS3.1			BQ347518	FTL	chr19	49468566	-	FTL	chr19	49468720	+
intron-3UTR	ENST00000327435	ENST00000327435		ChiTaRS3.1			CV569358	ADI1	chr2	3502784	+	ADI1	chr2	3502339	-
intron-3UTR	ENST00000327435	ENST00000382093		ChiTaRS3.1			CV569358	ADI1	chr2	3502784	+	ADI1	chr2	3502339	-
intron-3UTR	ENST00000382093	ENST00000327435		ChiTaRS3.1			CV569358	ADI1	chr2	3502784	+	ADI1	chr2	3502339	-
intron-3UTR	ENST00000382093	ENST00000382093		ChiTaRS3.1			CV569358	ADI1	chr2	3502784	+	ADI1	chr2	3502339	-
In-frame	ENST00000261588	ENST00000261588		ChiTaRS3.1			BF354268	KIAA0556	chr16	27640064	-	KIAA0556	chr16	27642463	+
5CDS-intron	ENST00000261588	ENST00000567894		ChiTaRS3.1			BF354268	KIAA0556	chr16	27640064	-	KIAA0556	chr16	27642463	+
intron-3CDS	ENST00000567894	ENST00000261588		ChiTaRS3.1			BF354268	KIAA0556	chr16	27640064	-	KIAA0556	chr16	27642463	+
intron-intron	ENST00000567894	ENST00000567894		ChiTaRS3.1			BF354268	KIAA0556	chr16	27640064	-	KIAA0556	chr16	27642463	+
In-frame	ENST00000394048	ENST00000394048		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000394048	ENST00000267113		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000394048	ENST00000541590		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
5CDS-intron	ENST00000394048	ENST00000550878		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000267113	ENST00000394048		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000267113	ENST00000267113		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000267113	ENST00000541590		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
5CDS-intron	ENST00000267113	ENST00000550878		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000541590	ENST00000394048		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000541590	ENST00000267113		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
In-frame	ENST00000541590	ENST00000541590		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
5CDS-intron	ENST00000541590	ENST00000550878		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
intron-3CDS	ENST00000550878	ENST00000394048		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
intron-3CDS	ENST00000550878	ENST00000267113		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
intron-3CDS	ENST00000550878	ENST00000541590		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
intron-intron	ENST00000550878	ENST00000550878		ChiTaRS3.1			BF753098	ESYT1	chr12	56526030	-	ESYT1	chr12	56527411	+
5CDS-3UTR	ENST00000261921	ENST00000261921		ChiTaRS3.1			AI652018	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
5CDS-3UTR	ENST00000261921	ENST00000567675		ChiTaRS3.1			AI652018	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000261921		ChiTaRS3.1			AI652018	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000567675	ENST00000567675		ChiTaRS3.1			AI652018	LOXL1	chr15	74238775	-	LOXL1	chr15	74244225	-
intron-3UTR	ENST00000327946	ENST00000589123		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000346156		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000395111		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000586919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000341919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000590282		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000443272		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000327946	ENST00000588839		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-3UTR	ENST00000536331	ENST00000589123		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000346156		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000395111		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000586919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000341919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000590282		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000443272		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000536331	ENST00000588839		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-3UTR	ENST00000552278	ENST00000589123		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000346156		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000395111		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000586919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000341919		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000590282		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000443272		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000552278	ENST00000588839		ChiTaRS3.1			AW296688	GRID1	chr10	88122150	-	NFIC	chr19	3464525	+
intron-intron	ENST00000369983	ENST00000535042		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-3UTR	ENST00000369983	ENST00000537328		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-3UTR	ENST00000369983	ENST00000543510		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-intron	ENST00000476019	ENST00000535042		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-3UTR	ENST00000476019	ENST00000537328		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-3UTR	ENST00000476019	ENST00000543510		ChiTaRS3.1			BQ640208	GBF1	chr10	104116104	+	TMEM258	chr11	61556648	-
intron-3UTR	ENST00000526355	ENST00000534336		ChiTaRS3.1			BG000658	GUCY1A2	chr11	106722440	+	MALAT1	chr11	65266972	-
intron-3UTR	ENST00000282249	ENST00000534336		ChiTaRS3.1			BG000658	GUCY1A2	chr11	106722440	+	MALAT1	chr11	65266972	-
intron-3UTR	ENST00000347596	ENST00000534336		ChiTaRS3.1			BG000658	GUCY1A2	chr11	106722440	+	MALAT1	chr11	65266972	-
5UTR-3CDS	ENST00000439128	ENST00000543470		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000439128	ENST00000366960		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000439128	ENST00000366959		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000439128	ENST00000543354		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000439128	ENST00000490299		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000543470		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000366960		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000366959		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000511633	ENST00000543354		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000511633	ENST00000490299		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000543470		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000366960		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000366959		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000510533	ENST00000543354		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000510533	ENST00000490299		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000543470		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000366960		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000366959		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000507142	ENST00000543354		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000507142	ENST00000490299		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000543470		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000366960		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000366959		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000512193	ENST00000543354		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000512193	ENST00000490299		ChiTaRS3.1			BI596518	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
intron-intron	ENST00000402198	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402198	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402466	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000402466	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000406341	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000406341	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000407969	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000407969	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000302463	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000302463	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000488236	ENST00000261716		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
intron-intron	ENST00000488236	ENST00000536202		ChiTaRS3.1			AI693398	SETD5	chr3	9497901	+	TAOK1	chr17	27733828	+
5CDS-5UTR	ENST00000287611	ENST00000295897		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000287611	ENST00000415165		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000287611	ENST00000503124		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000287611	ENST00000509063		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000287611	ENST00000401494		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000287611	ENST00000505649		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000265023	ENST00000295897		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000265023	ENST00000415165		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000265023	ENST00000503124		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000265023	ENST00000509063		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000265023	ENST00000401494		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000265023	ENST00000505649		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000447445	ENST00000295897		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-5UTR	ENST00000447445	ENST00000415165		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000447445	ENST00000503124		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000447445	ENST00000509063		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000447445	ENST00000401494		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
5CDS-intron	ENST00000447445	ENST00000505649		ChiTaRS3.1			DA640348	KNG1	chr3	186435462	+	ALB	chr4	74270004	+
intron-intron	ENST00000319359	ENST00000319359		ChiTaRS3.1			N31198	ELL3	chr15	44086784	-	ELL3	chr15	44086890	+
intron-intron	ENST00000319359	ENST00000497465		ChiTaRS3.1			N31198	ELL3	chr15	44086784	-	ELL3	chr15	44086890	+
intron-intron	ENST00000497465	ENST00000319359		ChiTaRS3.1			N31198	ELL3	chr15	44086784	-	ELL3	chr15	44086890	+
intron-intron	ENST00000497465	ENST00000497465		ChiTaRS3.1			N31198	ELL3	chr15	44086784	-	ELL3	chr15	44086890	+
intron-intron	ENST00000329214	ENST00000329214		ChiTaRS3.1			BM041288	CCDC137	chr17	79638480	+	CCDC137	chr17	79637791	+
intron-intron	ENST00000354042	ENST00000374617		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000477718		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000432933		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000495811		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000457382		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000482376		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000432609		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000492912		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000383208		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000354042	ENST00000476418		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000374617		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000477718		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000432933		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000495811		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000457382		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000482376		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000432609		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000492912		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000383208		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
intron-intron	ENST00000491630	ENST00000476418		ChiTaRS3.1			BF848338	SLC13A4	chr7	135386149	-	WDR46	chr6	4480740	+
5CDS-intron	ENST00000263398	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000263398	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000263398	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000263398	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000263398	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000263398	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526025	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000449691	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000360158	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000415148	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000437706	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433354	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000428726	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000526669	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000433892	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000278386	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000434472	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
5CDS-intron	ENST00000352818	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000466368		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000485713		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000413384		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000310317		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000392826		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-intron	ENST00000528922	ENST00000461735		ChiTaRS3.1			BF748398	CD44	chr11	35201902	-	SLC4A2	chr7	150773216	-
intron-3CDS	ENST00000229201	ENST00000233609		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000229201	ENST00000586686		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000229201	ENST00000591032		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000229201	ENST00000589656		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000229201	ENST00000593052		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000229201	ENST00000591804		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000229201	ENST00000586096		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000229201	ENST00000585665		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000233609		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000586686		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000591032		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000589656		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000593052		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000553532	ENST00000591804		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000553532	ENST00000586096		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000553532	ENST00000585665		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000233609		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000586686		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000591032		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000589656		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000593052		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000554616	ENST00000591804		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000554616	ENST00000586096		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3UTR	ENST00000554616	ENST00000585665		ChiTaRS3.1			H38868	TIMELESS	chr12	56813379	-	RPS15	chr19	1440425	+
intron-3CDS	ENST00000411527	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000411527	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000435145	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000437316	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000456529	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000455520	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419685	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549642	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000438757	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000415137	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000429783	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547938	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000417780	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430849	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000547371	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433801	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000428972	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000432486	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000548910	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442043	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399658	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000323109	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000399661	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549204	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000433114	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000419519	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000457432	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000549667	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000426733	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000442806	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000430668	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000233190		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000423725		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000457011		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000440274		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000455934		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000449699		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000551426	ENST00000432169		ChiTaRS3.1			BE842948	HLA-DQB2	chr6	4061388	+	NDUFS1	chr2	207003276	-
intron-3CDS	ENST00000301459	ENST00000301459		ChiTaRS3.1			BC010608	RCOR2	chr11	63681661	+	RCOR2	chr11	63681609	-
intron-intron	ENST00000301459	ENST00000473926		ChiTaRS3.1			BC010608	RCOR2	chr11	63681661	+	RCOR2	chr11	63681609	-
intron-3CDS	ENST00000473926	ENST00000301459		ChiTaRS3.1			BC010608	RCOR2	chr11	63681661	+	RCOR2	chr11	63681609	-
intron-intron	ENST00000473926	ENST00000473926		ChiTaRS3.1			BC010608	RCOR2	chr11	63681661	+	RCOR2	chr11	63681609	-
intron-intron	ENST00000307792	ENST00000307792		ChiTaRS3.1			DA570978	SEMA3E	chr7	83228985	-	SEMA3E	chr7	83235754	-
intron-intron	ENST00000307792	ENST00000427262		ChiTaRS3.1			DA570978	SEMA3E	chr7	83228985	-	SEMA3E	chr7	83235754	-
intron-intron	ENST00000427262	ENST00000307792		ChiTaRS3.1			DA570978	SEMA3E	chr7	83228985	-	SEMA3E	chr7	83235754	-
intron-intron	ENST00000427262	ENST00000427262		ChiTaRS3.1			DA570978	SEMA3E	chr7	83228985	-	SEMA3E	chr7	83235754	-
intron-3CDS	ENST00000316737	ENST00000263253		ChiTaRS3.1			AL044228	TSPAN16	chr19	11435261	+	EP300	chr22	41573672	-
intron-3CDS	ENST00000592955	ENST00000263253		ChiTaRS3.1			AL044228	TSPAN16	chr19	11435261	+	EP300	chr22	41573672	-
intron-3CDS	ENST00000590327	ENST00000263253		ChiTaRS3.1			AL044228	TSPAN16	chr19	11435261	+	EP300	chr22	41573672	-
3UTR-3CDS	ENST00000303562	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000303562	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-3CDS	ENST00000554617	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000554617	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-3CDS	ENST00000556324	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000556324	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-3CDS	ENST00000535987	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000535987	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-3CDS	ENST00000555242	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555242	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-3CDS	ENST00000555686	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
3UTR-intron	ENST00000555686	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-3CDS	ENST00000555347	ENST00000303562		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000554617		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000556324		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000535987		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000555242		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000555686		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000555347	ENST00000555347		ChiTaRS3.1			BP215108	FOS	chr14	75748367	+	FOS	chr14	75747739	+
intron-intron	ENST00000371756	ENST00000371756		ChiTaRS3.1			AA344688	UBAC1	chr9	138831563	-	UBAC1	chr9	138839557	-
intron-intron	ENST00000371756	ENST00000465873		ChiTaRS3.1			AA344688	UBAC1	chr9	138831563	-	UBAC1	chr9	138839557	-
intron-intron	ENST00000465873	ENST00000371756		ChiTaRS3.1			AA344688	UBAC1	chr9	138831563	-	UBAC1	chr9	138839557	-
intron-intron	ENST00000465873	ENST00000465873		ChiTaRS3.1			AA344688	UBAC1	chr9	138831563	-	UBAC1	chr9	138839557	-
5CDS-3UTR	ENST00000373610	ENST00000373610		ChiTaRS3.1			BE932678	TXLNA	chr1	32646959	-	TXLNA	chr1	32662477	-
5CDS-3UTR	ENST00000373610	ENST00000373609		ChiTaRS3.1			BE932678	TXLNA	chr1	32646959	-	TXLNA	chr1	32662477	-
5CDS-3UTR	ENST00000373609	ENST00000373610		ChiTaRS3.1			BE932678	TXLNA	chr1	32646959	-	TXLNA	chr1	32662477	-
5CDS-3UTR	ENST00000373609	ENST00000373609		ChiTaRS3.1			BE932678	TXLNA	chr1	32646959	-	TXLNA	chr1	32662477	-
intron-intron	ENST00000311075	ENST00000455089		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000342916		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000344576		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000420316		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000275493		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000442591		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000463948		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000311075	ENST00000454757		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000455089		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000342916		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000344576		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000420316		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000275493		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000442591		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000463948		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000497378	ENST00000454757		ChiTaRS3.1			AW006478	MUC13	chr3	124624444	+	EGFR	chr7	55194264	-
intron-intron	ENST00000450873	ENST00000263773		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000450873	ENST00000534003		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000284957	ENST00000263773		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000284957	ENST00000534003		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000439720	ENST00000263773		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000439720	ENST00000534003		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000437078	ENST00000263773		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000437078	ENST00000534003		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000484547	ENST00000263773		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000484547	ENST00000534003		ChiTaRS3.1			AW366358	RABGEF1	chr7	66117548	+	FNBP4	chr11	47749192	+
intron-intron	ENST00000486901	ENST00000486901		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000486901	ENST00000374695		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000486901	ENST00000430507		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000374695	ENST00000486901		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000374695	ENST00000374695		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000374695	ENST00000430507		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000430507	ENST00000486901		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000430507	ENST00000374695		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
intron-intron	ENST00000430507	ENST00000430507		ChiTaRS3.1			AW604468	HSPG2	chr1	22242274	+	HSPG2	chr1	22207023	-
5CDS-intron	ENST00000354371	ENST00000478136		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000354371	ENST00000496687		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000354371	ENST00000491017		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000392008	ENST00000478136		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000392008	ENST00000496687		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000392008	ENST00000491017		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409334	ENST00000478136		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409334	ENST00000496687		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409334	ENST00000491017		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409629	ENST00000478136		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409629	ENST00000496687		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
5CDS-intron	ENST00000409629	ENST00000491017		ChiTaRS3.1			BE694718	COPS8	chr2	238006366	-	FAM19A1	chr3	68194647	+
intron-intron	ENST00000319349	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000319349	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000319349	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000393664	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000393664	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000393664	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000538265	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000538265	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000538265	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545954	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545954	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545954	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545089	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545089	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000545089	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000591713	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000591713	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000591713	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000586826	ENST00000296591		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000586826	ENST00000380138		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000586826	ENST00000510271		ChiTaRS3.1			BF698228	ETV4	chr17	41606048	-	EDIL3	chr5	83413098	+
intron-intron	ENST00000367188	ENST00000495684		ChiTaRS3.1			BF772858	PPP1R15B	chr1	204379525	-	DISP1	chr1	222999620	-
intron-intron	ENST00000367188	ENST00000360254		ChiTaRS3.1			BF772858	PPP1R15B	chr1	204379525	-	DISP1	chr1	222999620	-
intron-intron	ENST00000367188	ENST00000284476		ChiTaRS3.1			BF772858	PPP1R15B	chr1	204379525	-	DISP1	chr1	222999620	-
intron-intron	ENST00000485162	ENST00000485162		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000485162	ENST00000463408		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000485162	ENST00000470449		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000463408	ENST00000485162		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000463408	ENST00000463408		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000463408	ENST00000470449		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000470449	ENST00000485162		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000470449	ENST00000463408		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
intron-intron	ENST00000470449	ENST00000470449		ChiTaRS3.1			AA635268	MYLK-AS1	chr3	123333101	-	MYLK-AS1	chr3	123332927	+
3UTR-3CDS	ENST00000394205	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394205	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394205	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394205	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394205	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394205	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000338517	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000338517	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000338517	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000338517	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000338517	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000338517	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394203	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394203	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394203	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394203	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394203	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394203	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000506322	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000506322	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000506322	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000506322	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000506322	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000506322	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000512749	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000512749	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000512749	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000512749	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000512749	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000512749	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000608372	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000608372	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000608372	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000608372	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000608372	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000608372	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000506597	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000506597	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000506597	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000506597	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000506597	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000506597	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394201	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394201	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394201	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394201	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000394201	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000394201	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000510586	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000510586	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000510586	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000510586	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3CDS	ENST00000510586	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
3UTR-3UTR	ENST00000510586	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000502535	ENST00000519416		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000502535	ENST00000520615		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000502535	ENST00000443286		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000502535	ENST00000520340		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3CDS	ENST00000502535	ENST00000518415		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000522752		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000348567		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000330691		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000317827		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000379931		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000276520		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000520973		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-3UTR	ENST00000502535	ENST00000520611		ChiTaRS3.1			AA043208	SCOC	chr4	141303482	-	TACC1	chr8	38693796	-
intron-intron	ENST00000405008	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000405008	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000405008	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000402114	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000402114	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000402114	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394754	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394754	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394754	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000309827	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000309827	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000309827	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394751	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394751	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000394751	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000463040	ENST00000537591		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000463040	ENST00000230048		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-intron	ENST00000463040	ENST00000476436		ChiTaRS3.1			AK123498	STON1-GTF2A1L	chr2	48859430	-	ACOT13	chr6	24705427	-
intron-3CDS	ENST00000314992	ENST00000367669		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
intron-3CDS	ENST00000314992	ENST00000308769		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
intron-3CDS	ENST00000458580	ENST00000367669		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
intron-3CDS	ENST00000458580	ENST00000308769		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
intron-3CDS	ENST00000559743	ENST00000367669		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
intron-3CDS	ENST00000559743	ENST00000308769		ChiTaRS3.1			DA687098	EXD1	chr15	41478381	+	RFWD2	chr1	176055026	-
3UTR-5UTR	ENST00000373210	ENST00000421182		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000357867		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000323926		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000336916		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000354785		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000357009		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000346544		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000345488		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000359671		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000446046		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000443816		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000432072		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000356005		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-intron	ENST00000373210	ENST00000490833		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
3UTR-5UTR	ENST00000373210	ENST00000426059		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000421182		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000357867		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000323926		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000336916		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000354785		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000357009		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000346544		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000345488		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000359671		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000446046		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000443816		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000432072		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000356005		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-intron	ENST00000488778	ENST00000490833		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
intron-5UTR	ENST00000488778	ENST00000426059		ChiTaRS3.1			BI049788	AGO4	chr1	36321712	+	FN1	chr2	216300534	+
5CDS-5UTR	ENST00000526406	ENST00000526406		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000526406	ENST00000533063		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000526406	ENST00000262580		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000533063	ENST00000526406		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000533063	ENST00000533063		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000533063	ENST00000262580		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000262580	ENST00000526406		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000262580	ENST00000533063		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
5CDS-5UTR	ENST00000262580	ENST00000262580		ChiTaRS3.1			BM472278	GSDMD	chr8	144643984	+	GSDMD	chr8	144640541	+
intron-5UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			BQ691528	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
5UTR-3CDS	ENST00000599227	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000599227	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000599227	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000599227	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000599227	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000599227	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000599227	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000599227	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000599227	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000599227	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000599227	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000599227	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000599227	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000269829	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000269829	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000269829	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000269829	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000269829	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000269829	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000269829	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000269829	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000269829	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000269829	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000269829	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000269829	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000269829	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000594384	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000594384	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000594384	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000594384	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000594384	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000594384	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000594384	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000594384	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000594384	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000594384	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000594384	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000594384	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000594384	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3CDS	ENST00000596597	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3CDS	ENST00000596597	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3CDS	ENST00000596597	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3UTR	ENST00000596597	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3UTR	ENST00000596597	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-3UTR	ENST00000596597	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-5UTR	ENST00000596597	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-5UTR	ENST00000596597	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-intron	ENST00000596597	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-intron	ENST00000596597	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-intron	ENST00000596597	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-intron	ENST00000596597	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
3UTR-intron	ENST00000596597	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596825	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596825	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596825	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596825	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596825	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596825	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596825	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596825	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596825	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596825	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596825	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596825	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596825	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000333581	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000333581	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000333581	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000333581	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000333581	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000333581	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000333581	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000333581	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000333581	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000333581	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000333581	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000333581	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000333581	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3CDS	ENST00000599953	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3CDS	ENST00000599953	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3CDS	ENST00000599953	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3UTR	ENST00000599953	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3UTR	ENST00000599953	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-3UTR	ENST00000599953	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-5UTR	ENST00000599953	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-5UTR	ENST00000599953	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000599953	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000599953	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000599953	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000599953	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000599953	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596652	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596652	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596652	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596652	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596652	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596652	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596652	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596652	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596652	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596652	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596652	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596652	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596652	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600044	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600044	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600044	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600044	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600044	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600044	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000600044	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000600044	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600044	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600044	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600044	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600044	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600044	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600220	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600220	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000600220	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600220	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600220	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000600220	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000600220	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000600220	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600220	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600220	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600220	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600220	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000600220	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596929	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596929	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000596929	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596929	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596929	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000596929	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596929	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000596929	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596929	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596929	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596929	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596929	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000596929	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000595981	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000595981	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000595981	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000595981	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000595981	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000595981	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000595981	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000595981	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000595981	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000595981	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000595981	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000595981	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000595981	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000415203	ENST00000599227		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000415203	ENST00000269829		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3CDS	ENST00000415203	ENST00000594384		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000415203	ENST00000596597		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000415203	ENST00000596825		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-3UTR	ENST00000415203	ENST00000333581		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000415203	ENST00000599953		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-5UTR	ENST00000415203	ENST00000596652		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000415203	ENST00000600044		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000415203	ENST00000600220		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000415203	ENST00000596929		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000415203	ENST00000595981		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
5UTR-intron	ENST00000415203	ENST00000415203		ChiTaRS3.1			BF366268	ZNF544	chr19	58755348	-	ZNF544	chr19	58758136	+
intron-intron	ENST00000414423	ENST00000265107		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000414423	ENST00000504564		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000414423	ENST00000510699		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000295024	ENST00000265107		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000295024	ENST00000504564		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000295024	ENST00000510699		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000366852	ENST00000265107		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000366852	ENST00000504564		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000366852	ENST00000510699		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000479727	ENST00000265107		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000479727	ENST00000504564		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-intron	ENST00000479727	ENST00000510699		ChiTaRS3.1			BF509638	WDR26	chr1	224621879	+	WDR70	chr5	37743572	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911178	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911178	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911178	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911178	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000360876	ENST00000453409		ChiTaRS3.1			BQ376118	EIF3B	chr7	2411865	+	COL6A6	chr3	130311389	+
intron-3CDS	ENST00000360876	ENST00000358511		ChiTaRS3.1			BQ376118	EIF3B	chr7	2411865	+	COL6A6	chr3	130311389	+
intron-3CDS	ENST00000397011	ENST00000453409		ChiTaRS3.1			BQ376118	EIF3B	chr7	2411865	+	COL6A6	chr3	130311389	+
intron-3CDS	ENST00000397011	ENST00000358511		ChiTaRS3.1			BQ376118	EIF3B	chr7	2411865	+	COL6A6	chr3	130311389	+
intron-intron	ENST00000546373	ENST00000376499		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000546373	ENST00000376472		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000546373	ENST00000376463		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000546373	ENST00000376484		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000546373	ENST00000464999		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000551568	ENST00000376499		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000551568	ENST00000376472		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000551568	ENST00000376463		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000551568	ENST00000376484		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000551568	ENST00000464999		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000338356	ENST00000376499		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000338356	ENST00000376472		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000338356	ENST00000376463		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000338356	ENST00000376484		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000338356	ENST00000464999		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000549691	ENST00000376499		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000549691	ENST00000376472		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000549691	ENST00000376463		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000549691	ENST00000376484		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-intron	ENST00000549691	ENST00000464999		ChiTaRS3.1			BG006748	CPM	chr12	69315758	-	TLE1	chr9	84296252	-
intron-3UTR	ENST00000454782	ENST00000341285		ChiTaRS3.1			T18548	PXT1	chr6	36401851	-	FBXL5	chr4	15606810	+
intron-3UTR	ENST00000454782	ENST00000412094		ChiTaRS3.1			T18548	PXT1	chr6	36401851	-	FBXL5	chr4	15606810	+
intron-3UTR	ENST00000454782	ENST00000382358		ChiTaRS3.1			T18548	PXT1	chr6	36401851	-	FBXL5	chr4	15606810	+
intron-intron	ENST00000454782	ENST00000514541		ChiTaRS3.1			T18548	PXT1	chr6	36401851	-	FBXL5	chr4	15606810	+
intron-intron	ENST00000306156	ENST00000306156		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000306156	ENST00000467135		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000306156	ENST00000394874		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000467135	ENST00000306156		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000467135	ENST00000467135		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000467135	ENST00000394874		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000394874	ENST00000306156		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000394874	ENST00000467135		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
intron-intron	ENST00000394874	ENST00000394874		ChiTaRS3.1			AA877048	PRKCE	chr2	46242825	+	PRKCE	chr2	46242766	-
In-frame	ENST00000373823	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
In-frame	ENST00000373823	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373823	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373823	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373823	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373808	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373808	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373808	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373808	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000436847	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000436847	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000436847	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000436847	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000449733	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000449733	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000449733	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000449733	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000412819	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000412819	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000412819	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000412819	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000394353	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000394353	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000394353	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000394353	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000341272	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000341272	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000341272	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000341272	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000545652	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000545652	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000545652	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000545652	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373818	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373818	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373818	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373818	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000485767	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000485767	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000485767	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000485767	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-3CDS	ENST00000373807	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000373807	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000373807	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000373807	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000373823		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000373808		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000436847		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000449733		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000412819		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000394353		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000341272		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000545652		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
Frame-shit	ENST00000373806	ENST00000373818		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373806	ENST00000485767		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373806	ENST00000373807		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
5CDS-intron	ENST00000373806	ENST00000373806		ChiTaRS3.1			H51498	GSN	chr9	124094878	+	GSN	chr9	124083586	+
intron-intron	ENST00000607016	ENST00000448662		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000431808		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000284776		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000437304		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000319471		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000449407		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000355634		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000393528		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000418609		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000607016	ENST00000498125		ChiTaRS3.1			BF326208	NUDT3	chr6	34349556	+	SORBS2	chr4	186726911	+
intron-intron	ENST00000264122	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000264122	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000407712	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000394027	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000403724	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000405772	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000513024		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000509638		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000508501		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000512946		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000313860		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000512632		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000512820		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000503057		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000511496		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000514096		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000509277		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000396595		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000381753		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000509454		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000545639	ENST00000515785		ChiTaRS3.1			CV401048	CBLB	chr3	105563838	-	LIMCH1	chr4	41617576	-
intron-intron	ENST00000431759	ENST00000431759		ChiTaRS3.1			W26358	SLC2A1-AS1	chr1	43441243	+	SLC2A1-AS1	chr1	43441099	-
intron-intron	ENST00000393330	ENST00000406451		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000401921		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000432645		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000441542		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000417496		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000476135		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000405010		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000428307		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000406072		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000456174		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000393330	ENST00000524023		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000406451		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000401921		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000432645		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000441542		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000417496		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000476135		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000405010		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000428307		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000406072		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000456174		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000247829	ENST00000524023		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000406451		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000401921		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000432645		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000441542		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000417496		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000476135		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000405010		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000428307		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000406072		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000456174		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000546561	ENST00000524023		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000406451		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000401921		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000432645		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000441542		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000417496		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000476135		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000405010		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000428307		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000406072		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000456174		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552128	ENST00000524023		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000406451		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000401921		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000432645		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000441542		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000417496		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000476135		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000405010		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000428307		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000406072		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000456174		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
intron-intron	ENST00000552786	ENST00000524023		ChiTaRS3.1			CV427378	TSPAN8	chr12	71556169	+	HDAC9	chr7	18876374	-
5CDS-intron	ENST00000360184	ENST00000264313		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
5CDS-intron	ENST00000360184	ENST00000506375		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
5CDS-intron	ENST00000360184	ENST00000512093		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
3UTR-intron	ENST00000556791	ENST00000264313		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
3UTR-intron	ENST00000556791	ENST00000506375		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
3UTR-intron	ENST00000556791	ENST00000512093		ChiTaRS3.1			BI014058	DYNC1H1	chr14	102500781	+	SLAIN2	chr4	48397588	+
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			C75568	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			C75568	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			C75568	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			C75568	TMEM50A	chr1	25688758	-	TMEM50A	chr1	25688785	+
In-frame	ENST00000534358	ENST00000252674		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
5CDS-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
In-frame	ENST00000389506	ENST00000252674		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
5CDS-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
In-frame	ENST00000354520	ENST00000252674		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
5CDS-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
3UTR-3CDS	ENST00000420751	ENST00000252674		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
3UTR-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			DQ224341	KMT2A	chr11	118355030	+	MLLT1	chr19	6222697	-
intron-intron	ENST00000458591	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000458591	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000421551	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000544052	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000541123	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000396629	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380338		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000355930		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000429426		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000475957		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000554486	ENST00000380321		ChiTaRS3.1			BG185378	SCFD1	chr14	31091687	-	MLLT3	chr9	20549656	+
intron-intron	ENST00000382148	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382148	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000447367	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382150	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382152	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000509207	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000382149	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000373823		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000373808		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000436847		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000449733		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000412819		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000394353		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000341272		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000545652		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000373818		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000485767		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000373807		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000359001	ENST00000373806		ChiTaRS3.1			BQ477488	KCNIP4	chr4	21463066	+	GSN	chr9	124095120	-
intron-intron	ENST00000321394	ENST00000367048		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000321394	ENST00000541436		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000321394	ENST00000472052		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000544255	ENST00000367048		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000544255	ENST00000541436		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000544255	ENST00000472052		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000420894	ENST00000367048		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000420894	ENST00000541436		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000420894	ENST00000472052		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000392168	ENST00000367048		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000392168	ENST00000541436		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000392168	ENST00000472052		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000546023	ENST00000367048		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000546023	ENST00000541436		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000546023	ENST00000472052		ChiTaRS3.1			BE893428	TCP1	chr6	160201014	+	ACAT2	chr6	160200946	-
intron-intron	ENST00000268035	ENST00000268035		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000268035	ENST00000558762		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000268035	ENST00000560432		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000558762	ENST00000268035		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000558762	ENST00000558762		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000558762	ENST00000560432		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000560432	ENST00000268035		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000560432	ENST00000558762		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
intron-intron	ENST00000560432	ENST00000560432		ChiTaRS3.1			BF370698	IGF1R	chr15	99212323	+	IGF1R	chr15	99212213	-
5CDS-5UTR	ENST00000535458	ENST00000233114		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409908		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000535458	ENST00000409476		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000539945		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000544381		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000394423		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000535458	ENST00000462944		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000233114		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409908		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000290158	ENST00000409476		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000539945		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000544381		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000394423		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000290158	ENST00000462944		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000233114		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409908		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000540627	ENST00000409476		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000539945		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000544381		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000394423		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000540627	ENST00000462944		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000233114		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409908		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-5UTR	ENST00000537679	ENST00000409476		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000539945		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000544381		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000394423		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
5CDS-intron	ENST00000537679	ENST00000462944		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000233114		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409908		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-5UTR	ENST00000577918	ENST00000409476		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000539945		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000544381		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000394423		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000577918	ENST00000462944		ChiTaRS3.1			BM767348	KPNB1	chr17	45757968	+	MDH1	chr2	63816113	+
intron-intron	ENST00000459937	ENST00000459937		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000459937	ENST00000424142		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000459937	ENST00000393114		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000459937	ENST00000430372		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000459937	ENST00000483029		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000424142	ENST00000459937		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000424142	ENST00000424142		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000424142	ENST00000393114		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000424142	ENST00000430372		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000424142	ENST00000483029		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000393114	ENST00000459937		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000393114	ENST00000424142		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000393114	ENST00000393114		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000393114	ENST00000430372		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000393114	ENST00000483029		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000430372	ENST00000459937		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000430372	ENST00000424142		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000430372	ENST00000393114		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000430372	ENST00000430372		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000430372	ENST00000483029		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000483029	ENST00000459937		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000483029	ENST00000424142		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000483029	ENST00000393114		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000483029	ENST00000430372		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000483029	ENST00000483029		ChiTaRS3.1			BF759358	C7orf49	chr7	134846435	+	C7orf49	chr7	134846461	-
intron-intron	ENST00000330978	ENST00000521674		ChiTaRS3.1			J04168	BOLA2	chr16	29676827	+	YTHDF3	chr8	64100596	-
intron-intron	ENST00000330978	ENST00000539294		ChiTaRS3.1			J04168	BOLA2	chr16	29676827	+	YTHDF3	chr8	64100596	-
intron-intron	ENST00000330978	ENST00000517371		ChiTaRS3.1			J04168	BOLA2	chr16	29676827	+	YTHDF3	chr8	64100596	-
intron-intron	ENST00000330978	ENST00000542911		ChiTaRS3.1			J04168	BOLA2	chr16	29676827	+	YTHDF3	chr8	64100596	-
intron-3CDS	ENST00000381196	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000381196	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000381196	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000381196	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000381196	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000381196	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000381196	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000360074	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000360074	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000360074	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000360074	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000360074	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000360074	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000360074	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000537002	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000537002	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000537002	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000537002	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000537002	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000537002	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000537002	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397617	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397617	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397617	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397617	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397617	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397617	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000397617	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000358503	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000358503	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000358503	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000358503	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000358503	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000358503	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000358503	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397611	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397611	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397611	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397611	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397611	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397611	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000397611	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000355233	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000355233	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000355233	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000355233	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000355233	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000355233	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000355233	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000356435	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000356435	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000356435	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000356435	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000356435	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000356435	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000356435	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000540109	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000540109	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000540109	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000540109	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000540109	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000540109	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000540109	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000486161	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000486161	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000486161	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000486161	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000486161	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000486161	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000486161	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397606	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397606	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397606	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000397606	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397606	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000397606	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000397606	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000463477	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000463477	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000463477	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000463477	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000463477	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000463477	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000463477	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000471274	ENST00000529639		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000471274	ENST00000531743		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000471274	ENST00000525297		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3CDS	ENST00000471274	ENST00000527548		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000471274	ENST00000279259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-3UTR	ENST00000471274	ENST00000529259		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
intron-intron	ENST00000471274	ENST00000434372		ChiTaRS3.1			DR979128	PTPRD	chr9	8316140	+	FAU	chr11	64888180	-
3UTR-intron	ENST00000326974	ENST00000304623		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
3UTR-intron	ENST00000326974	ENST00000359640		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
3UTR-intron	ENST00000326974	ENST00000511377		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
3UTR-intron	ENST00000326974	ENST00000458100		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
3UTR-intron	ENST00000326974	ENST00000503622		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
3UTR-intron	ENST00000326974	ENST00000495388		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000304623		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000359640		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000511377		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000458100		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000503622		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000244670	ENST00000495388		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000304623		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000359640		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000511377		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000458100		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000503622		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
5CDS-intron	ENST00000332245	ENST00000495388		ChiTaRS3.1			BI520168	KLHDC3	chr6	42989028	+	CTNND2	chr5	11094615	-
intron-intron	ENST00000472863	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000472863	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000498678	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000460160	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000476342	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000552000	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000470495	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000311626	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000490677	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485909	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000489475	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000472863		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000498678		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000460160		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000476342		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000552000		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000470495		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000311626		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000490677		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000485909		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000489475		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000465120	ENST00000465120		ChiTaRS3.1			AA904228	HOXB3	chr17	46657952	-	HOXB3	chr17	46657885	+
intron-intron	ENST00000485761	ENST00000485761		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000485761	ENST00000367036		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000485761	ENST00000310833		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000485761	ENST00000356522		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000485761	ENST00000537704		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000367036	ENST00000485761		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000367036	ENST00000367036		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000367036	ENST00000310833		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000367036	ENST00000356522		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000367036	ENST00000537704		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000310833	ENST00000485761		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000310833	ENST00000367036		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000310833	ENST00000310833		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000310833	ENST00000356522		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000310833	ENST00000537704		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000356522	ENST00000485761		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000356522	ENST00000367036		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000356522	ENST00000310833		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000356522	ENST00000356522		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000356522	ENST00000537704		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000537704	ENST00000485761		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000537704	ENST00000367036		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000537704	ENST00000310833		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-3UTR	ENST00000537704	ENST00000356522		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000537704	ENST00000537704		ChiTaRS3.1			AJ714388	CD34	chr1	208060020	+	CD34	chr1	208060068	-
intron-intron	ENST00000323853	ENST00000374736		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000323853	ENST00000494467		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000323853	ENST00000423487		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000323853	ENST00000374733		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000349783	ENST00000374736		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000349783	ENST00000494467		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000349783	ENST00000423487		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000349783	ENST00000374733		ChiTaRS3.1			BF988288	SNRNP200	chr2	96967435	+	ABCA1	chr9	107640002	-
intron-intron	ENST00000544892	ENST00000262096		ChiTaRS3.1			CA422988	ITGA3	chr17	48167773	-	ZDHHC2	chr8	17056957	-
3UTR-intron	ENST00000320031	ENST00000262096		ChiTaRS3.1			CA422988	ITGA3	chr17	48167773	-	ZDHHC2	chr8	17056957	-
intron-intron	ENST00000007722	ENST00000262096		ChiTaRS3.1			CA422988	ITGA3	chr17	48167773	-	ZDHHC2	chr8	17056957	-
intron-3CDS	ENST00000305877	ENST00000257290		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
intron-intron	ENST00000305877	ENST00000508170		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
intron-3CDS	ENST00000359540	ENST00000257290		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
intron-intron	ENST00000359540	ENST00000508170		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
intron-3CDS	ENST00000398512	ENST00000257290		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
intron-intron	ENST00000398512	ENST00000508170		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
3UTR-3CDS	ENST00000436990	ENST00000257290		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
3UTR-intron	ENST00000436990	ENST00000508170		ChiTaRS3.1			AY303970	BCR	chr22	23652041	+	PDGFRA	chr4	55141056	+
3UTR-intron	ENST00000373652	ENST00000403222		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000373652	ENST00000407373		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000373652	ENST00000332585		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000382310		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000446658		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000401475		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000437268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000535268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000373652	ENST00000496575		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000403222		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000283946	ENST00000407373		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000283946	ENST00000332585		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000382310		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000446658		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000401475		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000437268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000535268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000283946	ENST00000496575		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000403222		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000409992	ENST00000407373		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-3UTR	ENST00000409992	ENST00000332585		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000382310		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000446658		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000401475		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000437268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000535268		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
3UTR-intron	ENST00000409992	ENST00000496575		ChiTaRS3.1			AI624908	FBXO36	chr2	230875673	-	OSBP2	chr22	31303542	-
intron-intron	ENST00000357028	ENST00000356136		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000528420		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000533454		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000531818		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000532130		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000539288		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000525872		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000357028	ENST00000538870		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000356136		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000528420		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000533454		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000531818		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000532130		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000539288		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000525872		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000292035	ENST00000538870		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000356136		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000528420		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000533454		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000531818		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000532130		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000539288		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000525872		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000474263	ENST00000538870		ChiTaRS3.1			AK026378	MED27	chr9	134798294	-	UVRAG	chr11	75635697	+
intron-intron	ENST00000358413	ENST00000593786		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000358413	ENST00000374796		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000358413	ENST00000359003		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000278772	ENST00000593786		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000278772	ENST00000374796		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000278772	ENST00000359003		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000381253	ENST00000593786		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000381253	ENST00000374796		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000381253	ENST00000359003		ChiTaRS3.1			BF572568	ZNF343	chr20	2505069	-	NCOA6	chr20	33324564	-
intron-intron	ENST00000340855	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000340855	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000537071	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000541269	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000422081	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370441	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000490775	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000370443	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000427113	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000340855		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000537071		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000541269		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000422081		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000370441		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000490775		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000370443		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000427113		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-intron	ENST00000428056	ENST00000428056		ChiTaRS3.1			CB268858	IDS	chrX	148587469	-	IDS	chrX	148607295	-
intron-3UTR	ENST00000495786	ENST00000328024		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000495786	ENST00000601897		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000495786	ENST00000594216		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-3UTR	ENST00000251377	ENST00000328024		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000251377	ENST00000601897		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000251377	ENST00000594216		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-3UTR	ENST00000391738	ENST00000328024		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000391738	ENST00000601897		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000391738	ENST00000594216		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-3UTR	ENST00000251376	ENST00000328024		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000251376	ENST00000601897		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000251376	ENST00000594216		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-3UTR	ENST00000391737	ENST00000328024		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000391737	ENST00000601897		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000391737	ENST00000594216		ChiTaRS3.1			EL583048	LILRA2	chr19	55106725	+	RAB11B	chr19	8468714	-
intron-intron	ENST00000569482	ENST00000343933		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000569482	ENST00000375077		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000565683	ENST00000343933		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000565683	ENST00000375077		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000563622	ENST00000343933		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000563622	ENST00000375077		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000267978	ENST00000343933		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000267978	ENST00000375077		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000563539	ENST00000343933		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-intron	ENST00000563539	ENST00000375077		ChiTaRS3.1			DB345218	MAN2C1	chr15	75648504	+	CORO2A	chr9	100897545	+
intron-3CDS	ENST00000426959	ENST00000299980		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000426959	ENST00000423132		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000426959	ENST00000433195		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000426959	ENST00000569748		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000426959	ENST00000393512		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-intron	ENST00000426959	ENST00000570297		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-intron	ENST00000426959	ENST00000564155		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000373930	ENST00000299980		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000373930	ENST00000423132		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000373930	ENST00000433195		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000373930	ENST00000569748		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000373930	ENST00000393512		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-intron	ENST00000373930	ENST00000570297		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-intron	ENST00000373930	ENST00000564155		ChiTaRS3.1			T06178	MEGF9	chr9	123367093	+	AP1G1	chr16	71789947	-
intron-3CDS	ENST00000476243	ENST00000246535		ChiTaRS3.1			BM804118	CENPV	chr17	16246100	+	PDCD2L	chr19	34916942	+
intron-3CDS	ENST00000476243	ENST00000587065		ChiTaRS3.1			BM804118	CENPV	chr17	16246100	+	PDCD2L	chr19	34916942	+
intron-3CDS	ENST00000299736	ENST00000246535		ChiTaRS3.1			BM804118	CENPV	chr17	16246100	+	PDCD2L	chr19	34916942	+
intron-3CDS	ENST00000299736	ENST00000587065		ChiTaRS3.1			BM804118	CENPV	chr17	16246100	+	PDCD2L	chr19	34916942	+
5CDS-intron	ENST00000370558	ENST00000400227		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000370558	ENST00000349736		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000370558	ENST00000217244		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000370558	ENST00000400217		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000535010	ENST00000400227		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000535010	ENST00000349736		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000535010	ENST00000217244		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000535010	ENST00000400217		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000482504	ENST00000400227		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000482504	ENST00000349736		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000482504	ENST00000217244		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
5CDS-intron	ENST00000482504	ENST00000400217		ChiTaRS3.1			AW610498	SH3GLB1	chr1	87207920	-	CSNK2A1	chr20	488014	+
intron-intron	ENST00000330175	ENST00000336314		ChiTaRS3.1			BF507768	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503131	ENST00000336314		ChiTaRS3.1			BF507768	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503734	ENST00000336314		ChiTaRS3.1			BF507768	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-3UTR	ENST00000262953	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000262953	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000262953	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000262953	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000262953	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000262953	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000262953	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000262953	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000262953	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000455444	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000455444	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000455444	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000455444	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000591529	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000591529	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000591529	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000591529	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000586422	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000586422	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000586422	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000586422	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000447365	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000447365	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000447365	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000447365	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000443826	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000443826	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000443826	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000443826	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000590536	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000590536	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000590536	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000590536	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000426948	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000426948	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000426948	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000426948	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000262953		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000455444		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000591529		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000586422		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000447365		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-3UTR	ENST00000587217	ENST00000443826		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000587217	ENST00000590536		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000587217	ENST00000426948		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000587217	ENST00000587217		ChiTaRS3.1			BI046568	TLE2	chr19	3013799	+	TLE2	chr19	2997702	+
intron-intron	ENST00000301740	ENST00000370192		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000301740	ENST00000474241		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000301740	ENST00000423006		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000301740	ENST00000306031		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000574593	ENST00000370192		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000574593	ENST00000474241		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000574593	ENST00000423006		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
intron-intron	ENST00000574593	ENST00000306031		ChiTaRS3.1			CV375938	SRRM2	chr16	2804796	+	DPYD	chr1	98322581	-
5CDS-intron	ENST00000378526	ENST00000376389		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000456573		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000470643		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000420604		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000436822		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000492441		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000383382		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000460694		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000553223		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000470163		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000383562		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000496175		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000490802		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000430843		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000444632		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000378526	ENST00000466680		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000376389		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000456573		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000470643		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000420604		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000436822		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000492441		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000383382		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000460694		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000553223		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000470163		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000383562		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000496175		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000490802		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000430843		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000444632		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
5CDS-intron	ENST00000262327	ENST00000466680		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000376389		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000456573		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000470643		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000420604		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000436822		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000492441		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000383382		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000460694		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000553223		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000470163		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000383562		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000496175		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000490802		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000430843		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000444632		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-intron	ENST00000586407	ENST00000466680		ChiTaRS3.1			BF900318	LIG3	chr17	33310410	-	FLOT1	chr6	2041667	-
intron-3CDS	ENST00000311177	ENST00000293842		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-intron	ENST00000311177	ENST00000584164		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-intron	ENST00000311177	ENST00000582556		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000311177	ENST00000583011		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000311177	ENST00000585176		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000311177	ENST00000578812		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-3CDS	ENST00000550387	ENST00000293842		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-intron	ENST00000550387	ENST00000584164		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-intron	ENST00000550387	ENST00000582556		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000550387	ENST00000583011		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000550387	ENST00000585176		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-5UTR	ENST00000550387	ENST00000578812		ChiTaRS3.1			BF812918	HOXB9	chr17	46700001	+	RPL26	chr17	8286512	-
intron-3UTR	ENST00000400259	ENST00000398675		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-intron	ENST00000400259	ENST00000280876		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-3UTR	ENST00000344548	ENST00000398675		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-intron	ENST00000344548	ENST00000280876		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-3UTR	ENST00000315554	ENST00000398675		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-intron	ENST00000315554	ENST00000280876		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-3UTR	ENST00000498236	ENST00000398675		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-intron	ENST00000498236	ENST00000280876		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-3UTR	ENST00000421089	ENST00000398675		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-intron	ENST00000421089	ENST00000280876		ChiTaRS3.1			BF817918	CDC42	chr1	22392226	-	GXYLT1	chr12	42480641	-
intron-3CDS	ENST00000476243	ENST00000398590		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000295900		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000487717		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000538065		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000476243	ENST00000484332		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000476243	ENST00000488239		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000398590		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000295900		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000487717		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000538065		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-3CDS	ENST00000299736	ENST00000484332		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000299736	ENST00000488239		ChiTaRS3.1			BG150438	CENPV	chr17	16250923	-	ATXN7	chr3	63973778	-
intron-intron	ENST00000264036	ENST00000379261		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000416382		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000450189		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000542579		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000399850		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000417956		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000354440		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000427450		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000315874		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000608830		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000609692		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000354897		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000264036	ENST00000537122		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000379261		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000416382		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000450189		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000542579		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000399850		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000417956		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000354440		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000427450		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000315874		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000608830		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000609692		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000354897		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000392814	ENST00000537122		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000379261		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000416382		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000450189		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000542579		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000399850		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000417956		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000354440		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000427450		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000315874		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000608830		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000609692		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000354897		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-intron	ENST00000530144	ENST00000537122		ChiTaRS3.1			AW897878	MCAM	chr11	119179531	-	CELF2	chr10	11317287	-
intron-3CDS	ENST00000216484	ENST00000216484		ChiTaRS3.1			AW376098	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-intron	ENST00000216484	ENST00000556264		ChiTaRS3.1			AW376098	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-3CDS	ENST00000556264	ENST00000216484		ChiTaRS3.1			AW376098	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-intron	ENST00000556264	ENST00000556264		ChiTaRS3.1			AW376098	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
5CDS-intron	ENST00000582337	ENST00000446450		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000582337	ENST00000354956		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000582337	ENST00000354449		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000582337	ENST00000469654		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000309902	ENST00000446450		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000309902	ENST00000354956		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000309902	ENST00000354449		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000309902	ENST00000469654		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000577538	ENST00000446450		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000577538	ENST00000354956		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000577538	ENST00000354449		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000577538	ENST00000469654		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000299687	ENST00000446450		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000299687	ENST00000354956		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000299687	ENST00000354449		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
5CDS-intron	ENST00000299687	ENST00000469654		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
intron-intron	ENST00000584235	ENST00000446450		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
intron-intron	ENST00000584235	ENST00000354956		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
intron-intron	ENST00000584235	ENST00000354449		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
intron-intron	ENST00000584235	ENST00000469654		ChiTaRS3.1			BF371118	ZNF407	chr18	72343884	-	ATG7	chr3	11484526	-
3UTR-3UTR	ENST00000377724	ENST00000377724		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000377724	ENST00000242323		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000377724	ENST00000483167		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000242323	ENST00000377724		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000242323	ENST00000242323		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000242323	ENST00000483167		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000483167	ENST00000377724		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000483167	ENST00000242323		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
3UTR-3UTR	ENST00000483167	ENST00000483167		ChiTaRS3.1			BM711158	DCAF10	chr9	37861655	-	DCAF10	chr9	37861685	+
intron-intron	ENST00000202028	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000202028	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373950	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000441639	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000373946	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-intron	ENST00000338074	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000373941	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000369831		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000460717		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000369827		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000442650		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000464206		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000241337		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000414179		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
intron-intron	ENST00000479336	ENST00000369829		ChiTaRS3.1			BI006168	EPB41L1	chr20	34819503	+	GSTM2	chr1	110211122	-
3UTR-5UTR	ENST00000558401	ENST00000558401		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-5UTR	ENST00000558401	ENST00000559916		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-5UTR	ENST00000558401	ENST00000544417		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-intron	ENST00000558401	ENST00000559220		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000559916	ENST00000558401		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000559916	ENST00000559916		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000559916	ENST00000544417		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-intron	ENST00000559916	ENST00000559220		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000544417	ENST00000558401		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000544417	ENST00000559916		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-5UTR	ENST00000544417	ENST00000544417		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-intron	ENST00000544417	ENST00000559220		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-5UTR	ENST00000559220	ENST00000558401		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-5UTR	ENST00000559220	ENST00000559916		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-5UTR	ENST00000559220	ENST00000544417		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
3UTR-intron	ENST00000559220	ENST00000559220		ChiTaRS3.1			AW394168	B2M	chr15	45010285	+	B2M	chr15	45003712	+
intron-3UTR	ENST00000428149	ENST00000428149		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000428149	ENST00000429370		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000428149	ENST00000389568		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000428149	ENST00000417449		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000428149	ENST00000530933		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-3UTR	ENST00000429370	ENST00000428149		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000429370	ENST00000429370		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000429370	ENST00000389568		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000429370	ENST00000417449		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000429370	ENST00000530933		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-3UTR	ENST00000389568	ENST00000428149		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000389568	ENST00000429370		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000389568	ENST00000389568		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000389568	ENST00000417449		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000389568	ENST00000530933		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-3UTR	ENST00000417449	ENST00000428149		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000417449	ENST00000429370		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000417449	ENST00000389568		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000417449	ENST00000417449		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000417449	ENST00000530933		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-3UTR	ENST00000530933	ENST00000428149		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000530933	ENST00000429370		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000530933	ENST00000389568		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000530933	ENST00000417449		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
intron-intron	ENST00000530933	ENST00000530933		ChiTaRS3.1			DB315008	ALKBH8	chr11	107375681	+	ALKBH8	chr11	107373755	+
5CDS-intron	ENST00000341547	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000346145		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000349607		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000463781		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000475231		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000478685		ChiTaRS3.1			AW391858	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H20268	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000290949	ENST00000368444		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-intron	ENST00000290949	ENST00000356535		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-3UTR	ENST00000540149	ENST00000368444		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-intron	ENST00000540149	ENST00000356535		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-3UTR	ENST00000602876	ENST00000368444		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-intron	ENST00000602876	ENST00000356535		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-3UTR	ENST00000567694	ENST00000368444		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-intron	ENST00000567694	ENST00000356535		ChiTaRS3.1			BM986848	ATP6V0D1	chr16	67472228	+	FABP7	chr6	123105015	+
intron-3CDS	ENST00000552285	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000552285	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000552285	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000315970	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000315970	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000315970	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000439210	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000439210	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000439210	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000389146	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000389146	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389146	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000413095	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000413095	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000413095	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000551035	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000551035	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000551035	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000435406	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000435406	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000435406	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000257966	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000257966	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000257966	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000389142	ENST00000552285		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-3CDS	ENST00000389142	ENST00000315970		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000439210		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000389146		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000413095		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000551035		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000435406		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000257966		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000389142	ENST00000389142		ChiTaRS3.1			BI012638	OS9	chr12	58088536	-	OS9	chr12	58088553	+
intron-intron	ENST00000344683	ENST00000344683		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000344683	ENST00000519480		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000344683	ENST00000522905		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000344683	ENST00000521175		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000519480	ENST00000344683		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000519480	ENST00000519480		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000519480	ENST00000522905		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000519480	ENST00000521175		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000522905	ENST00000344683		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000522905	ENST00000519480		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000522905	ENST00000522905		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000522905	ENST00000521175		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000521175	ENST00000344683		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000521175	ENST00000519480		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000521175	ENST00000522905		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-intron	ENST00000521175	ENST00000521175		ChiTaRS3.1			DB382708	MCPH1	chr8	6378817	+	MCPH1	chr8	6371346	+
intron-3UTR	ENST00000549578	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549578	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000360579	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000552130	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000447578	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000546588	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549970	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000549578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000360579		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000552130		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000447578		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000546588		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000551655	ENST00000549970		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			AA401048	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000502271	ENST00000382148		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000447367		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000382150		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000382152		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000509207		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000382149		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000502271	ENST00000359001		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000382148		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000447367		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000382150		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000382152		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000509207		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000382149		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000504924	ENST00000359001		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000382148		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000447367		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000382150		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000382152		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000509207		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000382149		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000510591	ENST00000359001		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000382148		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000447367		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000382150		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000382152		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000509207		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000382149		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000507646	ENST00000359001		ChiTaRS3.1			BE144288	ARL15	chr5	53444369	+	KCNIP4	chr4	20888660	+
intron-intron	ENST00000358823	ENST00000461804		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000358823	ENST00000295926		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000358823	ENST00000479052		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000358823	ENST00000295925		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000413307	ENST00000461804		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000413307	ENST00000295926		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000413307	ENST00000479052		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000413307	ENST00000295925		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000236925	ENST00000461804		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000236925	ENST00000295926		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000236925	ENST00000479052		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
intron-intron	ENST00000236925	ENST00000295925		ChiTaRS3.1			CV421808	CAMSAP2	chr1	200809080	-	CCNL1	chr3	156873189	-
3UTR-intron	ENST00000534336	ENST00000238256		ChiTaRS3.1			BQ777358	MALAT1	chr11	65267607	+	FKBP15	chr9	116037688	-
3UTR-intron	ENST00000534336	ENST00000493847		ChiTaRS3.1			BQ777358	MALAT1	chr11	65267607	+	FKBP15	chr9	116037688	-
Frame-shit	ENST00000344691	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000344691	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000344691	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000344691	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000325074	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000325074	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000325074	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000325074	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000437180	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
In-frame	ENST00000437180	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000437180	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000437180	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000300305	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000300305	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000300305	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000300305	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000399240	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000399240	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000399240	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000399240	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000486278	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000486278	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000486278	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000486278	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000494829	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000494829	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000494829	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
intron-3UTR	ENST00000494829	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000358356	ENST00000542507		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000358356	ENST00000373812		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
Frame-shit	ENST00000358356	ENST00000541996		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
5CDS-3UTR	ENST00000358356	ENST00000478283		ChiTaRS3.1			EU093085	RUNX1	chr21	36231770	-	YTHDF2	chr1	29095441	+
intron-3CDS	ENST00000371130	ENST00000259254		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000371130	ENST00000356887		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000371130	ENST00000409836		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000371130	ENST00000464053		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000259254		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000356887		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000409836		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000422452	ENST00000464053		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000259254		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000356887		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000409836		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000461429	ENST00000464053		ChiTaRS3.1			N38988	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000269299	ENST00000269299		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000269299	ENST00000380920		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000269299	ENST00000574388		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000269299	ENST00000572879		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-3UTR	ENST00000380920	ENST00000269299		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000380920	ENST00000380920		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000380920	ENST00000574388		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000380920	ENST00000572879		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-3UTR	ENST00000574388	ENST00000269299		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000574388	ENST00000380920		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000574388	ENST00000574388		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000574388	ENST00000572879		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-3UTR	ENST00000572879	ENST00000269299		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000572879	ENST00000380920		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000572879	ENST00000574388		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
intron-intron	ENST00000572879	ENST00000572879		ChiTaRS3.1			M10058	ASGR1	chr17	7076806	-	ASGR1	chr17	7076785	+
Frame-shit	ENST00000311117	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000311117	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000311117	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000311117	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000311117	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-intron	ENST00000311117	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
Frame-shit	ENST00000334914	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334914	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334914	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334914	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334914	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-intron	ENST00000334914	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
Frame-shit	ENST00000257745	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000257745	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000257745	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000257745	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000257745	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-intron	ENST00000257745	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
Frame-shit	ENST00000334877	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334877	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334877	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334877	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-5UTR	ENST00000334877	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
5CDS-intron	ENST00000334877	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-3CDS	ENST00000476671	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000476671	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000476671	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000476671	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000476671	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-intron	ENST00000476671	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-3CDS	ENST00000480368	ENST00000311117		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000480368	ENST00000334914		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000480368	ENST00000257745		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000480368	ENST00000334877		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-5UTR	ENST00000480368	ENST00000476671		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-intron	ENST00000480368	ENST00000480368		ChiTaRS3.1			AK024088	KMT2E	chr7	104752797	+	KMT2E	chr7	104703868	+
intron-3CDS	ENST00000222553	ENST00000228434		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000222553	ENST00000536709		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000354289	ENST00000228434		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000354289	ENST00000536709		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000484527	ENST00000228434		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000484527	ENST00000536709		ChiTaRS3.1			DB135958	NAMPT	chr7	105913035	-	CD69	chr12	9907769	-
intron-3CDS	ENST00000394688	ENST00000394688		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-3CDS	ENST00000394688	ENST00000394689		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-5UTR	ENST00000394688	ENST00000401491		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-3CDS	ENST00000394689	ENST00000394688		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-3CDS	ENST00000394689	ENST00000394689		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-5UTR	ENST00000394689	ENST00000401491		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-3CDS	ENST00000401491	ENST00000394688		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-3CDS	ENST00000401491	ENST00000394689		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-5UTR	ENST00000401491	ENST00000401491		ChiTaRS3.1			W26848	BRD7	chr16	50368762	+	BRD7	chr16	50402681	-
intron-intron	ENST00000448637	ENST00000254190		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000448637	ENST00000543813		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000312675	ENST00000254190		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000312675	ENST00000543813		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000543006	ENST00000254190		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000543006	ENST00000543813		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000471917	ENST00000254190		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000471917	ENST00000543813		ChiTaRS3.1			BF988508	LPP	chr3	187972215	+	CHSY1	chr15	101772190	+
intron-intron	ENST00000354577	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000354577	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000403834	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368068	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000479213	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368060	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368058	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000545957	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000368053	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000540546	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000354577		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000403834		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368068		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000479213		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368060		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368058		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000545957		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000368053		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000540546		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-intron	ENST00000539158	ENST00000539158		ChiTaRS3.1			AA648178	MED23	chr6	131932398	-	MED23	chr6	131932481	+
intron-3UTR	ENST00000381916	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000381916	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000381916	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000333602	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000333602	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000333602	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000428187	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000428187	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000428187	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000392400	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000392400	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000392400	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000316664	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000316664	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000316664	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000468819	ENST00000395290		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000358597		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000395292		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000310513		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000361904		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000539455		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-3UTR	ENST00000468819	ENST00000531165		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
intron-intron	ENST00000468819	ENST00000532048		ChiTaRS3.1			BF817488	TNK2	chr3	195597005	-	CELF1	chr11	47493282	+
3UTR-3CDS	ENST00000374050	ENST00000374050		ChiTaRS3.1			CA449988	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
3UTR-intron	ENST00000374050	ENST00000473413		ChiTaRS3.1			CA449988	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-3CDS	ENST00000473413	ENST00000374050		ChiTaRS3.1			CA449988	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-intron	ENST00000473413	ENST00000473413		ChiTaRS3.1			CA449988	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-intron	ENST00000531709	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000393701		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000568461		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000288040		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000449317		ChiTaRS3.1			BE504888	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000264674	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000264674	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000392736	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000464456	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000472280	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000494292	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000468789	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000460814	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000433243	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000373871		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000436342		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000373864		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000540618		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000545175		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000373863		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-intron	ENST00000485957	ENST00000471498		ChiTaRS3.1			BQ948988	MECOM	chr3	169200995	-	EYA3	chr1	28332228	+
intron-3CDS	ENST00000475548	ENST00000255409		ChiTaRS3.1			AV707858	SMTN	chr22	31478179	+	CHI3L1	chr1	203148610	-
intron-3CDS	ENST00000358743	ENST00000255409		ChiTaRS3.1			AV707858	SMTN	chr22	31478179	+	CHI3L1	chr1	203148610	-
intron-3CDS	ENST00000347557	ENST00000255409		ChiTaRS3.1			AV707858	SMTN	chr22	31478179	+	CHI3L1	chr1	203148610	-
intron-3CDS	ENST00000333137	ENST00000255409		ChiTaRS3.1			AV707858	SMTN	chr22	31478179	+	CHI3L1	chr1	203148610	-
intron-3CDS	ENST00000404574	ENST00000255409		ChiTaRS3.1			AV707858	SMTN	chr22	31478179	+	CHI3L1	chr1	203148610	-
intron-intron	ENST00000268704	ENST00000268704		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000268704	ENST00000341316		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000268704	ENST00000565891		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000341316	ENST00000268704		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000341316	ENST00000341316		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000341316	ENST00000565891		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000565891	ENST00000268704		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000565891	ENST00000341316		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000565891	ENST00000565891		ChiTaRS3.1			BE089508	SPG7	chr16	89589690	+	SPG7	chr16	89589502	-
intron-intron	ENST00000498272	ENST00000498272		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-3UTR	ENST00000498272	ENST00000234827		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-intron	ENST00000498272	ENST00000371331		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
3UTR-intron	ENST00000234827	ENST00000498272		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
3UTR-3UTR	ENST00000234827	ENST00000234827		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
3UTR-intron	ENST00000234827	ENST00000371331		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-intron	ENST00000371331	ENST00000498272		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-3UTR	ENST00000371331	ENST00000234827		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-intron	ENST00000371331	ENST00000371331		ChiTaRS3.1			AW296068	TCEANC2	chr1	54563147	+	TCEANC2	chr1	54563385	-
intron-3CDS	ENST00000379226	ENST00000379226		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000379226	ENST00000476598		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000379226	ENST00000379220		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-3CDS	ENST00000476598	ENST00000379226		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000476598	ENST00000476598		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000476598	ENST00000379220		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-3CDS	ENST00000379220	ENST00000379226		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000379220	ENST00000476598		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-intron	ENST00000379220	ENST00000379220		ChiTaRS3.1			CB852408	APOO	chrX	23851565	+	APOO	chrX	23874489	-
intron-3CDS	ENST00000382004	ENST00000318607		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000382004	ENST00000519004		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000382004	ENST00000522387		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-intron	ENST00000382004	ENST00000519596		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000358730	ENST00000318607		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000358730	ENST00000519004		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000358730	ENST00000522387		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-intron	ENST00000358730	ENST00000519596		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000302303	ENST00000318607		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000302303	ENST00000519004		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000302303	ENST00000522387		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-intron	ENST00000302303	ENST00000519596		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000381984	ENST00000318607		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000381984	ENST00000519004		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3CDS	ENST00000381984	ENST00000522387		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-intron	ENST00000381984	ENST00000519596		ChiTaRS3.1			DW419798	RFX3	chr9	3524905	-	PABPC1	chr8	101719175	-
intron-3UTR	ENST00000425933	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000425933	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000425933	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000425933	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000425933	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000543599	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000543599	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000543599	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000543599	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000543599	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000329082	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000329082	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000329082	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000329082	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000329082	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000542321	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000542321	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000542321	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000542321	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000542321	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000538818	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000538818	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000538818	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000538818	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000538818	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557301	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557301	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557301	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000557301	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000557301	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557420	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557420	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000557420	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000557420	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000557420	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556658	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556658	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556658	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000556658	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000556658	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556087	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556087	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000556087	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000556087	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000556087	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000555584	ENST00000228495		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000555584	ENST00000540089		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-3UTR	ENST00000555584	ENST00000424763		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000555584	ENST00000538161		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000555584	ENST00000540411		ChiTaRS3.1			AW237208	RGMA	chr15	93586993	+	KCTD10	chr12	109888315	+
intron-intron	ENST00000333942	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000358365	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000583994	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000545287	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000354266	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000394692	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000581094	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
intron-intron	ENST00000580976	ENST00000581935		ChiTaRS3.1			BG996638	RHOT1	chr17	30500848	-	ANKRD20A5P	chr18	14222229	-
In-frame	ENST00000340281	ENST00000377351		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
In-frame	ENST00000340281	ENST00000335972		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000340281	ENST00000490869		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000340281	ENST00000377269		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
intron-3CDS	ENST00000361911	ENST00000377351		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
intron-3CDS	ENST00000361911	ENST00000335972		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
intron-intron	ENST00000361911	ENST00000490869		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
intron-intron	ENST00000361911	ENST00000377269		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
In-frame	ENST00000370447	ENST00000377351		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
In-frame	ENST00000370447	ENST00000335972		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000370447	ENST00000490869		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000370447	ENST00000377269		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
Frame-shit	ENST00000455342	ENST00000377351		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
Frame-shit	ENST00000455342	ENST00000335972		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000455342	ENST00000490869		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
5CDS-intron	ENST00000455342	ENST00000377269		ChiTaRS3.1			CB147708	ZNF326	chr1	90493206	-	UBA1	chrX	47070299	+
intron-3UTR	ENST00000440005	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000440005	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000440005	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000440005	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000440005	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000440005	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000440005	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000438934	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000438934	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000438934	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000438934	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000438934	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000438934	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000438934	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000421572	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000421572	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000421572	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000421572	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000421572	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000421572	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000421572	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000399539	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000399539	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000399539	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000399539	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000399539	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000399539	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000399539	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000537283	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000537283	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000537283	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000537283	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000537283	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000537283	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000537283	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000424407	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000424407	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000424407	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000424407	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000424407	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000424407	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000424407	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000540720	ENST00000440005		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000540720	ENST00000438934		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-3UTR	ENST00000540720	ENST00000421572		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000540720	ENST00000399539		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000540720	ENST00000537283		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000540720	ENST00000424407		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
intron-intron	ENST00000540720	ENST00000540720		ChiTaRS3.1			X91348	DGCR5	chr22	18958031	-	DGCR5	chr22	18958142	+
3UTR-intron	ENST00000374232	ENST00000253861		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
3UTR-intron	ENST00000374232	ENST00000539845		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
3UTR-intron	ENST00000374232	ENST00000393161		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
3UTR-intron	ENST00000374232	ENST00000545148		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
3UTR-intron	ENST00000374232	ENST00000460346		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
3UTR-intron	ENST00000374232	ENST00000541309		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000253861		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000539845		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000393161		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000545148		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000460346		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-intron	ENST00000604751	ENST00000541309		ChiTaRS3.1			AW177638	SNX30	chr9	115636944	+	EXOC4	chr7	133199583	+
intron-5UTR	ENST00000360319	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000360319	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000360319	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000422373	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000422373	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000422373	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000369850	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369850	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369850	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000369856	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369856	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000369856	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000344736	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000344736	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000344736	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-5UTR	ENST00000498491	ENST00000358372		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000498491	ENST00000337387		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000498491	ENST00000494513		ChiTaRS3.1			DA847298	FLNA	chrX	153599657	-	WTAP	chr6	160148129	+
intron-intron	ENST00000356341	ENST00000341170		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000354801		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000484708		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000341170		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000354801		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000484708		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000341170		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000354801		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000484708		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000341170		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000354801		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000484708		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000341170		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000354801		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000484708		ChiTaRS3.1			AW861108	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-3UTR	ENST00000488834	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000488834	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000488834	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000474597	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000474597	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000474597	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000244763	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000244763	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000244763	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000397511	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000397511	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000397511	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000534851	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000534851	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000534851	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000489567	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000489567	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000489567	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000479365	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000479365	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000479365	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-3UTR	ENST00000462112	ENST00000256646		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000462112	ENST00000602566		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
intron-intron	ENST00000462112	ENST00000493703		ChiTaRS3.1			BF756608	SSR1	chr6	7299038	+	NOTCH2	chr1	120456886	-
5CDS-intron	ENST00000338970	ENST00000390168		ChiTaRS3.1			AA912468	RPL14	chr3	40503696	-	H19	chr11	2018434	+
5CDS-intron	ENST00000396203	ENST00000390168		ChiTaRS3.1			AA912468	RPL14	chr3	40503696	-	H19	chr11	2018434	+
3UTR-intron	ENST00000416518	ENST00000390168		ChiTaRS3.1			AA912468	RPL14	chr3	40503696	-	H19	chr11	2018434	+
intron-intron	ENST00000461368	ENST00000390168		ChiTaRS3.1			AA912468	RPL14	chr3	40503696	-	H19	chr11	2018434	+
intron-intron	ENST00000381873	ENST00000585509		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000589297		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000591455		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000446868		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000361101		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000589296		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381873	ENST00000586175		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000585509		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000589297		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000591455		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000446868		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000361101		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000589296		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-intron	ENST00000381867	ENST00000586175		ChiTaRS3.1			AW897918	SNPH	chr20	1254966	+	CYTH1	chr17	76694898	-
intron-3UTR	ENST00000371175	ENST00000376836		ChiTaRS3.1			H51698	RHAG	chr6	49598282	-	COMMD3	chr10	22609102	+
intron-3UTR	ENST00000371175	ENST00000483684		ChiTaRS3.1			H51698	RHAG	chr6	49598282	-	COMMD3	chr10	22609102	+
intron-3UTR	ENST00000229810	ENST00000376836		ChiTaRS3.1			H51698	RHAG	chr6	49598282	-	COMMD3	chr10	22609102	+
intron-3UTR	ENST00000229810	ENST00000483684		ChiTaRS3.1			H51698	RHAG	chr6	49598282	-	COMMD3	chr10	22609102	+
intron-3UTR	ENST00000251849	ENST00000299432		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000251849	ENST00000372912		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000442415	ENST00000299432		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000442415	ENST00000372912		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000534997	ENST00000299432		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000534997	ENST00000372912		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-3UTR	ENST00000542177	ENST00000299432		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000542177	ENST00000372912		ChiTaRS3.1			AW968008	RAF1	chr3	12637996	-	MSS51	chr10	75183877	-
intron-intron	ENST00000426851	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000426851	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000485111	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000485111	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000420008	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000420008	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000475153	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000475153	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000483892	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000483892	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000491174	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000491174	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000540950	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000540950	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000335901	ENST00000402038		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000335901	ENST00000492350		ChiTaRS3.1			BF899538	ZNF398	chr7	148858349	-	PARG	chr10	51127287	-
intron-intron	ENST00000317276	ENST00000363840		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000365524		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000364822		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000363859		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000385578		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000363146		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000317276	ENST00000364084		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000363840		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000365524		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000364822		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000363859		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000385578		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000363146		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000581082	ENST00000364084		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000363840		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000365524		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000364822		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000363859		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000385578		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000363146		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000578089	ENST00000364084		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000363840		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000365524		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000364822		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000363859		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000385578		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000363146		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000354903	ENST00000364084		ChiTaRS3.1			BC072458	PER1	chr17	8052598	-	GAS5	chr1	173834242	+
intron-intron	ENST00000268489	ENST00000530124		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000268489	ENST00000257247		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000268489	ENST00000525875		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000268489	ENST00000378024		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000397992	ENST00000530124		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000397992	ENST00000257247		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000397992	ENST00000525875		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000397992	ENST00000378024		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000558842	ENST00000530124		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000558842	ENST00000257247		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000558842	ENST00000525875		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-intron	ENST00000558842	ENST00000378024		ChiTaRS3.1			BG952428	ZFHX3	chr16	72886672	-	AHNAK	chr11	62291491	+
intron-3UTR	ENST00000323646	ENST00000323646		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-3UTR	ENST00000323646	ENST00000415826		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-intron	ENST00000323646	ENST00000394613		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-3UTR	ENST00000415826	ENST00000323646		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-3UTR	ENST00000415826	ENST00000415826		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-intron	ENST00000415826	ENST00000394613		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-3UTR	ENST00000394613	ENST00000323646		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-3UTR	ENST00000394613	ENST00000415826		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
intron-intron	ENST00000394613	ENST00000394613		ChiTaRS3.1			BE166188	PLA2G16	chr11	63342057	-	PLA2G16	chr11	63342180	+
5CDS-3UTR	ENST00000256652	ENST00000348405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000513858		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000395310		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000443462		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000509142		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000326950		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000432794		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000311785		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000448323		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000505472		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000256652	ENST00000500777		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000508502		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000355196		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000264405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000505984		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000508479		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000256652	ENST00000436790		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000348405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000513858		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000395310		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000443462		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000509142		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000326950		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000432794		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000311785		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000448323		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000505472		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-3UTR	ENST00000369470	ENST00000500777		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000508502		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000355196		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000264405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000505984		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000508479		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
5CDS-intron	ENST00000369470	ENST00000436790		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000348405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000513858		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000395310		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000443462		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000509142		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000326950		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000432794		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000311785		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000448323		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000505472		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-3UTR	ENST00000467588	ENST00000500777		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000508502		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000355196		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000264405		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000505984		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000508479		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
3UTR-intron	ENST00000467588	ENST00000436790		ChiTaRS3.1			BF824998	CD101	chr1	117576519	-	SEC31A	chr4	83740102	+
intron-intron	ENST00000397817	ENST00000354989		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000360031		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000376652		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000433259		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000485936		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000354989		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000360031		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000376652		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000433259		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000485936		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000354989		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000360031		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000376652		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000433259		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000485936		ChiTaRS3.1			EL584048	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-5UTR	ENST00000271277	ENST00000340384		ChiTaRS3.1			BC071888	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-5UTR	ENST00000607039	ENST00000340384		ChiTaRS3.1			BC071888	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-intron	ENST00000433342	ENST00000433342		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000433342	ENST00000435090		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000433342	ENST00000484153		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000435090	ENST00000433342		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000435090	ENST00000435090		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000435090	ENST00000484153		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000484153	ENST00000433342		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000484153	ENST00000435090		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000484153	ENST00000484153		ChiTaRS3.1			R21098	C1orf167	chr1	11848489	+	C1orf167	chr1	11848514	-
intron-intron	ENST00000263805	ENST00000337273		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000454282		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000447967		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000523768		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000513944		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000506351		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000337273		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000454282		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000447967		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000523768		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000513944		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000506351		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000337273		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000454282		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000447967		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000523768		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000513944		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000506351		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000337273		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000454282		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000447967		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000523768		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000513944		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000506351		ChiTaRS3.1			BQ338378	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-3CDS	ENST00000268035	ENST00000315082		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-intron	ENST00000268035	ENST00000569943		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-3CDS	ENST00000558762	ENST00000315082		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-intron	ENST00000558762	ENST00000569943		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-3CDS	ENST00000560432	ENST00000315082		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-intron	ENST00000560432	ENST00000569943		ChiTaRS3.1			BQ068718	IGF1R	chr15	99371486	-	RHOT2	chr16	721090	+
intron-intron	ENST00000331923	ENST00000396950		ChiTaRS3.1			AW948948	PAXBP1	chr21	34123698	-	OR51E2	chr11	4710533	+
intron-intron	ENST00000290178	ENST00000396950		ChiTaRS3.1			AW948948	PAXBP1	chr21	34123698	-	OR51E2	chr11	4710533	+
intron-intron	ENST00000472588	ENST00000396950		ChiTaRS3.1			AW948948	PAXBP1	chr21	34123698	-	OR51E2	chr11	4710533	+
5CDS-3UTR	ENST00000412331	ENST00000412331		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000412331	ENST00000381683		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-3UTR	ENST00000412331	ENST00000406934		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000412331	ENST00000476955		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-3UTR	ENST00000381683	ENST00000412331		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000381683	ENST00000381683		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-3UTR	ENST00000381683	ENST00000406934		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000381683	ENST00000476955		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-3UTR	ENST00000406934	ENST00000412331		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000406934	ENST00000381683		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-3UTR	ENST00000406934	ENST00000406934		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
5CDS-intron	ENST00000406934	ENST00000476955		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
intron-3UTR	ENST00000476955	ENST00000412331		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
intron-intron	ENST00000476955	ENST00000381683		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
intron-3UTR	ENST00000476955	ENST00000406934		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
intron-intron	ENST00000476955	ENST00000476955		ChiTaRS3.1			AW022788	EIF3L	chr22	38284459	-	EIF3L	chr22	38284496	+
intron-intron	ENST00000481781	ENST00000381196		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000360074		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000537002		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000397617		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000358503		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000397611		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000355233		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000356435		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000540109		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000486161		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000397606		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000463477		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000481781	ENST00000471274		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000381196		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000360074		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000537002		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000397617		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000358503		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000397611		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000355233		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000356435		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000540109		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000486161		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000397606		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000463477		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000397270	ENST00000471274		ChiTaRS3.1			BI042758	INS-IGF2	chr11	2150342	-	PTPRD	chr9	10452396	-
intron-intron	ENST00000398309	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398309	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398309	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376104	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376104	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376104	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000418306	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000418306	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000418306	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000280241	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000280241	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000280241	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000543673	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000543673	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000543673	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376106	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376106	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000376106	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000330014	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000330014	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000330014	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000537455	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000537455	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000537455	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000524982	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000524982	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000524982	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000532653	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000532653	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000532653	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000531015	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000531015	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000531015	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398301	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398301	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398301	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000426717	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000426717	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000426717	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000404783	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000404783	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000404783	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398304	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398304	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000398304	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000530800	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000530800	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000530800	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000472545	ENST00000367635		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000472545	ENST00000367634		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
intron-intron	ENST00000472545	ENST00000477383		ChiTaRS3.1			CV356198	DLG2	chr11	83485283	+	RALGPS2	chr1	178833148	+
5CDS-intron	ENST00000254323	ENST00000269373		ChiTaRS3.1			BF852708	ZSWIM4	chr19	13928717	-	FN3KRP	chr17	80676134	+
5CDS-intron	ENST00000254323	ENST00000535965		ChiTaRS3.1			BF852708	ZSWIM4	chr19	13928717	-	FN3KRP	chr17	80676134	+
5CDS-intron	ENST00000440752	ENST00000269373		ChiTaRS3.1			BF852708	ZSWIM4	chr19	13928717	-	FN3KRP	chr17	80676134	+
5CDS-intron	ENST00000440752	ENST00000535965		ChiTaRS3.1			BF852708	ZSWIM4	chr19	13928717	-	FN3KRP	chr17	80676134	+
intron-intron	ENST00000307877	ENST00000384994		ChiTaRS3.1			BG005598	SRP68	chr17	74068473	+	NEAT1	chr11	65190648	-
intron-intron	ENST00000539137	ENST00000384994		ChiTaRS3.1			BG005598	SRP68	chr17	74068473	+	NEAT1	chr11	65190648	-
intron-intron	ENST00000355113	ENST00000384994		ChiTaRS3.1			BG005598	SRP68	chr17	74068473	+	NEAT1	chr11	65190648	-
intron-intron	ENST00000602720	ENST00000384994		ChiTaRS3.1			BG005598	SRP68	chr17	74068473	+	NEAT1	chr11	65190648	-
intron-intron	ENST00000542536	ENST00000384994		ChiTaRS3.1			BG005598	SRP68	chr17	74068473	+	NEAT1	chr11	65190648	-
3UTR-3CDS	ENST00000530758	ENST00000334163		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
3UTR-3CDS	ENST00000530758	ENST00000369294		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
3UTR-5UTR	ENST00000530758	ENST00000471254		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
Frame-shit	ENST00000256463	ENST00000334163		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
Frame-shit	ENST00000256463	ENST00000369294		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
5CDS-5UTR	ENST00000256463	ENST00000471254		ChiTaRS3.1			W23948	BRK1	chr3	10168040	+	POLR3C	chr1	145606321	-
intron-intron	ENST00000296129	ENST00000296129		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000296129	ENST00000425231		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000296129	ENST00000490471		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000425231	ENST00000296129		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000425231	ENST00000425231		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000425231	ENST00000490471		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000490471	ENST00000296129		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000490471	ENST00000425231		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-intron	ENST00000490471	ENST00000490471		ChiTaRS3.1			BG980088	CDCP1	chr3	45148140	-	CDCP1	chr3	45148024	+
intron-3CDS	ENST00000376177	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000376177	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000376177	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000396172	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000396172	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000396172	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000417556	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000417556	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000417556	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000458640	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000458640	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000458640	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000462421	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000462421	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000462421	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415382	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415382	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415382	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453105	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453105	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453105	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000449074	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000449074	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000449074	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552820	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552820	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552820	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000463430	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000463430	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000463430	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000438578	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000438578	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000438578	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415689	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415689	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000415689	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456476	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456476	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456476	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412106	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412106	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412106	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547039	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547039	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547039	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550435	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550435	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550435	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453488	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453488	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453488	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453138	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453138	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000453138	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552288	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552288	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000552288	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000441425	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000441425	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000441425	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456666	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456666	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000456666	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546633	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546633	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546633	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000483957	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000483957	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000483957	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430703	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430703	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430703	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000416863	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000416863	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000416863	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000413678	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000413678	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000413678	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000414440	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000414440	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000414440	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547489	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547489	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000547489	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000551031	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000551031	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000551031	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000468089	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000468089	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000468089	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400293	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400293	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400293	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400296	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400296	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400296	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400295	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400295	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000400295	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000383508	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000383508	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000383508	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548340	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548340	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548340	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548331	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548331	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548331	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000495391	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000495391	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000495391	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000446341	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000446341	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000446341	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548614	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548614	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000548614	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000448296	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000448296	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000448296	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412330	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412330	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000412330	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000445218	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000445218	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000445218	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546637	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546637	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000546637	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000489325	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000489325	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000489325	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000450987	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000450987	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000450987	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000431360	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000431360	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000431360	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430784	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430784	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000430784	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550217	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550217	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000550217	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000470514	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000470514	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000470514	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
Frame-shit	ENST00000549374	ENST00000225992		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
Frame-shit	ENST00000549374	ENST00000591228		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
Frame-shit	ENST00000549374	ENST00000587006		ChiTaRS3.1			BP384968	DDX39B	chr6	2829961	+	PPY	chr17	42018933	-
intron-3CDS	ENST00000475040	ENST00000361099		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000475040	ENST00000409465		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000475040	ENST00000540176		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000475040	ENST00000392322		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000475040	ENST00000392323		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000272418	ENST00000361099		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000272418	ENST00000409465		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000272418	ENST00000540176		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000272418	ENST00000392322		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-3CDS	ENST00000272418	ENST00000392323		ChiTaRS3.1			BF765898	MRPS5	chr2	95775693	-	STAT1	chr2	191872330	-
intron-intron	ENST00000375446	ENST00000545826		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000513237		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000540549		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000380013		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000305737		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000394764		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000504042		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000375446	ENST00000413648		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000545826		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000513237		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000540549		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000380013		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000305737		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000394764		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000504042		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
intron-intron	ENST00000489274	ENST00000413648		ChiTaRS3.1			CB243858	NINJ1	chr9	95883840	+	TET2	chr4	106074016	+
Frame-shit	ENST00000360184	ENST00000361216		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
Frame-shit	ENST00000360184	ENST00000392233		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
5CDS-intron	ENST00000360184	ENST00000459972		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
3UTR-3CDS	ENST00000556791	ENST00000361216		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
3UTR-3CDS	ENST00000556791	ENST00000392233		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
3UTR-intron	ENST00000556791	ENST00000459972		ChiTaRS3.1			BI033138	DYNC1H1	chr14	102499656	-	ATP1A2	chr1	160105057	-
intron-intron	ENST00000258761	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000258761	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000433922	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000432311	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000452975	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000405202	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000608999		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000336894		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000480184		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000356764		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000290419		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000391959		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000407633	ENST00000367270		ChiTaRS3.1			BE816678	BZW2	chr7	16722519	+	PPP1R12B	chr1	202488665	+
intron-intron	ENST00000339561	ENST00000339561		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000185206		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000544153		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000339561	ENST00000486570		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000339561		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000185206		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000544153		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000185206	ENST00000486570		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000339561		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000185206		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000544153		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000544153	ENST00000486570		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000339561		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000185206		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000544153		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
intron-intron	ENST00000486570	ENST00000486570		ChiTaRS3.1			BI057718	CLIC5	chr6	45933315	-	CLIC5	chr6	45934143	-
Frame-shit	ENST00000374640	ENST00000374640		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374640	ENST00000374639		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374640	ENST00000374637		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374639	ENST00000374640		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374639	ENST00000374639		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374639	ENST00000374637		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374637	ENST00000374640		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374637	ENST00000374639		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374637	ENST00000374637		ChiTaRS3.1			BE769808	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
5CDS-3UTR	ENST00000394667	ENST00000367385		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394667	ENST00000538004		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394667	ENST00000367383		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394667	ENST00000417895		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-3UTR	ENST00000502534	ENST00000367385		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000502534	ENST00000538004		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000502534	ENST00000367383		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000502534	ENST00000417895		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-3UTR	ENST00000394665	ENST00000367385		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394665	ENST00000538004		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394665	ENST00000367383		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394665	ENST00000417895		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-3UTR	ENST00000506397	ENST00000367385		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000506397	ENST00000538004		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000506397	ENST00000367383		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000506397	ENST00000417895		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-3UTR	ENST00000394668	ENST00000367385		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394668	ENST00000538004		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394668	ENST00000367383		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000394668	ENST00000417895		ChiTaRS3.1			AI624448	RPL34	chr4	109546303	-	NEK7	chr1	198291019	-
5CDS-intron	ENST00000361417	ENST00000361417		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000356063		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000534672		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000527898		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000524713		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000361417		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000356063		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000534672		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000527898		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000524713		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000361417		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000356063		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000534672		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000527898		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000524713		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000361417		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000356063		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000534672		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000527898		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000524713		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000361417		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000356063		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000534672		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000527898		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000524713		ChiTaRS3.1			AA330088	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-3UTR	ENST00000393784	ENST00000360876		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
5CDS-3UTR	ENST00000393784	ENST00000397011		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
intron-3UTR	ENST00000519860	ENST00000360876		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
intron-3UTR	ENST00000519860	ENST00000397011		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
5CDS-3UTR	ENST00000523291	ENST00000360876		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
5CDS-3UTR	ENST00000523291	ENST00000397011		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
5CDS-3UTR	ENST00000326654	ENST00000360876		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
5CDS-3UTR	ENST00000326654	ENST00000397011		ChiTaRS3.1			BF813428	ERGIC1	chr5	172341765	+	EIF3B	chr7	2419992	-
intron-intron	ENST00000275036	ENST00000275036		ChiTaRS3.1			AA525878	HMGN3	chr6	79911090	-	HMGN3	chr6	79910962	+
intron-intron	ENST00000275036	ENST00000344726		ChiTaRS3.1			AA525878	HMGN3	chr6	79911090	-	HMGN3	chr6	79910962	+
intron-intron	ENST00000344726	ENST00000275036		ChiTaRS3.1			AA525878	HMGN3	chr6	79911090	-	HMGN3	chr6	79910962	+
intron-intron	ENST00000344726	ENST00000344726		ChiTaRS3.1			AA525878	HMGN3	chr6	79911090	-	HMGN3	chr6	79910962	+
5CDS-intron	ENST00000324932	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000324932	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000359171	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000355260	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
5CDS-intron	ENST00000397004	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000397007	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000380158		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000264572		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000408927		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000512857		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000453712		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000339360		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000488828	ENST00000408900		ChiTaRS3.1			AF133334	NUP98	chr11	3781769	-	RAP1GDS1	chr4	99214548	+
intron-intron	ENST00000415807	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000415807	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000415807	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000415807	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000415807	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000415807	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000415807	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-3UTR	ENST00000336824	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
3UTR-intron	ENST00000336824	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000416957	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000416957	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000392699	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000392699	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000421757	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000421757	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000423424	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000423424	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000415807		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-3UTR	ENST00000476794	ENST00000336824		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000416957		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000392699		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000421757		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000423424		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
intron-intron	ENST00000476794	ENST00000476794		ChiTaRS3.1			BE548868	FNDC3B	chr3	172116853	-	FNDC3B	chr3	172116887	+
Frame-shit	ENST00000248553	ENST00000265318		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
Frame-shit	ENST00000248553	ENST00000404537		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
Frame-shit	ENST00000248553	ENST00000373876		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
5CDS-intron	ENST00000248553	ENST00000265317		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
5CDS-intron	ENST00000248553	ENST00000603926		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
5CDS-intron	ENST00000248553	ENST00000373873		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
5CDS-intron	ENST00000248553	ENST00000289656		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
5CDS-5UTR	ENST00000248553	ENST00000491370		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-3CDS	ENST00000429938	ENST00000265318		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-3CDS	ENST00000429938	ENST00000404537		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-3CDS	ENST00000429938	ENST00000373876		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-intron	ENST00000429938	ENST00000265317		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-intron	ENST00000429938	ENST00000603926		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-intron	ENST00000429938	ENST00000373873		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-intron	ENST00000429938	ENST00000289656		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-5UTR	ENST00000429938	ENST00000491370		ChiTaRS3.1			DA537518	HSPB1	chr7	75932092	+	OBSL1	chr2	220435250	-
intron-3CDS	ENST00000544392	ENST00000368457		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000544392	ENST00000368456		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-intron	ENST00000544392	ENST00000483463		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000369151	ENST00000368457		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000369151	ENST00000368456		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-intron	ENST00000369151	ENST00000483463		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000340214	ENST00000368457		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000340214	ENST00000368456		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-intron	ENST00000340214	ENST00000483463		ChiTaRS3.1			BU677298	CACUL1	chr10	120438530	+	PYGO2	chr1	154931816	-
intron-3CDS	ENST00000592765	ENST00000560079		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
intron-3CDS	ENST00000592765	ENST00000299927		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
intron-3CDS	ENST00000361680	ENST00000560079		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
intron-3CDS	ENST00000361680	ENST00000299927		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
intron-3CDS	ENST00000355868	ENST00000560079		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
intron-3CDS	ENST00000355868	ENST00000299927		ChiTaRS3.1			BQ339888	WDR88	chr19	33651168	-	ZNF592	chr15	85326519	+
3UTR-3UTR	ENST00000334121	ENST00000334121		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
3UTR-3UTR	ENST00000334121	ENST00000380918		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
3UTR-3UTR	ENST00000334121	ENST00000284041		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
intron-3UTR	ENST00000380918	ENST00000334121		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
intron-3UTR	ENST00000380918	ENST00000380918		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
intron-3UTR	ENST00000380918	ENST00000284041		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
3UTR-3UTR	ENST00000284041	ENST00000334121		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
3UTR-3UTR	ENST00000284041	ENST00000380918		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
3UTR-3UTR	ENST00000284041	ENST00000284041		ChiTaRS3.1			CA312708	SREK1	chr5	65475042	-	SREK1	chr5	65474721	+
intron-intron	ENST00000462138	ENST00000462138		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000462138	ENST00000423525		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000462138	ENST00000461139		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000462138	ENST00000423516		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000462138	ENST00000296289		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423525	ENST00000462138		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423525	ENST00000423525		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423525	ENST00000461139		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423525	ENST00000423516		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423525	ENST00000296289		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000461139	ENST00000462138		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000461139	ENST00000423525		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000461139	ENST00000461139		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000461139	ENST00000423516		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000461139	ENST00000296289		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423516	ENST00000462138		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423516	ENST00000423525		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423516	ENST00000461139		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423516	ENST00000423516		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000423516	ENST00000296289		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000296289	ENST00000462138		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000296289	ENST00000423525		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000296289	ENST00000461139		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000296289	ENST00000423516		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
intron-intron	ENST00000296289	ENST00000296289		ChiTaRS3.1			AW847418	TKT	chr3	53267145	-	TKT	chr3	53267497	-
In-frame	ENST00000299767	ENST00000299767		ChiTaRS3.1			CV356218	HSP90B1	chr12	104332160	-	HSP90B1	chr12	104336521	-
Frame-shit	ENST00000310118	ENST00000310118		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000310118	ENST00000435761		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000310118	ENST00000439383		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-3UTR	ENST00000310118	ENST00000459910		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
Frame-shit	ENST00000435761	ENST00000310118		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000435761	ENST00000435761		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000435761	ENST00000439383		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-3UTR	ENST00000435761	ENST00000459910		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
Frame-shit	ENST00000439383	ENST00000310118		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000439383	ENST00000435761		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-intron	ENST00000439383	ENST00000439383		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
5CDS-3UTR	ENST00000439383	ENST00000459910		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
intron-3CDS	ENST00000459910	ENST00000310118		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
intron-intron	ENST00000459910	ENST00000435761		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
intron-intron	ENST00000459910	ENST00000439383		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
intron-3UTR	ENST00000459910	ENST00000459910		ChiTaRS3.1			CO245088	PSMD2	chr3	184023617	+	PSMD2	chr3	184017638	+
3UTR-3CDS	ENST00000298229	ENST00000298229		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000298229	ENST00000541756		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000298229	ENST00000538751		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000541756	ENST00000298229		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000541756	ENST00000541756		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000541756	ENST00000538751		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000538751	ENST00000298229		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000538751	ENST00000541756		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
3UTR-3CDS	ENST00000538751	ENST00000538751		ChiTaRS3.1			BG991798	INPPL1	chr11	71949677	+	INPPL1	chr11	71946193	+
intron-3CDS	ENST00000228284	ENST00000381140		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3UTR	ENST00000228284	ENST00000470606		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3CDS	ENST00000431469	ENST00000381140		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3UTR	ENST00000431469	ENST00000470606		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3CDS	ENST00000552221	ENST00000381140		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3UTR	ENST00000552221	ENST00000470606		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3CDS	ENST00000546611	ENST00000381140		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-3UTR	ENST00000546611	ENST00000470606		ChiTaRS3.1			BU686098	SART3	chr12	108916675	+	GTF3A	chr13	28004700	+
intron-intron	ENST00000391976	ENST00000391976		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391976	ENST00000310931		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391976	ENST00000391975		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391976	ENST00000427183		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391976	ENST00000476807		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000310931	ENST00000391976		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000310931	ENST00000310931		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000310931	ENST00000391975		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000310931	ENST00000427183		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000310931	ENST00000476807		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391975	ENST00000391976		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391975	ENST00000310931		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391975	ENST00000391975		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391975	ENST00000427183		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000391975	ENST00000476807		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000427183	ENST00000391976		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000427183	ENST00000310931		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000427183	ENST00000391975		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000427183	ENST00000427183		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000427183	ENST00000476807		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000476807	ENST00000391976		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000476807	ENST00000310931		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000476807	ENST00000391975		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000476807	ENST00000427183		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000476807	ENST00000476807		ChiTaRS3.1			AA293628	HDLBP	chr2	242194491	+	HDLBP	chr2	242192767	-
intron-intron	ENST00000390168	ENST00000407071		ChiTaRS3.1			BF871628	H19	chr11	2016784	-	KIF26B	chr1	245628842	+
intron-intron	ENST00000390168	ENST00000366518		ChiTaRS3.1			BF871628	H19	chr11	2016784	-	KIF26B	chr1	245628842	+
intron-intron	ENST00000390168	ENST00000479506		ChiTaRS3.1			BF871628	H19	chr11	2016784	-	KIF26B	chr1	245628842	+
intron-intron	ENST00000523719	ENST00000196169		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000377894		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000535286		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000377881		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000523719	ENST00000463109		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000196169		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000377894		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000535286		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000377881		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000276609	ENST00000463109		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000196169		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000377894		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000535286		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000377881		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000309536	ENST00000463109		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000196169		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000377894		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000535286		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000377881		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-intron	ENST00000520249	ENST00000463109		ChiTaRS3.1			AK023578	SLC26A7	chr8	92337422	+	TDRD3	chr13	61146439	+
intron-3UTR	ENST00000296328	ENST00000296328		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000296328	ENST00000428095		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000296328	ENST00000535858		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-3UTR	ENST00000428095	ENST00000296328		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000428095	ENST00000428095		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000428095	ENST00000535858		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-3UTR	ENST00000535858	ENST00000296328		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000535858	ENST00000428095		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000535858	ENST00000535858		ChiTaRS3.1			BE813748	UBXN7	chr3	196089181	+	UBXN7	chr3	196083331	-
intron-intron	ENST00000336078	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000336078	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000336078	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000336078	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000336078	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000336078	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591083	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000589288	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591230	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000591808	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000336078		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000591083		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000589288		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000591230		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000591808		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-intron	ENST00000588956	ENST00000588956		ChiTaRS3.1			CV407788	ZNF532	chr18	56541827	-	ZNF532	chr18	56541203	+
intron-3UTR	ENST00000554012	ENST00000554012		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000554012	ENST00000402399		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000554012	ENST00000556450		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-intron	ENST00000554012	ENST00000555202		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000402399	ENST00000554012		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000402399	ENST00000402399		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000402399	ENST00000556450		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-intron	ENST00000402399	ENST00000555202		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000556450	ENST00000554012		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000556450	ENST00000402399		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000556450	ENST00000556450		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-intron	ENST00000556450	ENST00000555202		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000555202	ENST00000554012		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000555202	ENST00000402399		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000555202	ENST00000556450		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-intron	ENST00000555202	ENST00000555202		ChiTaRS3.1			AA417758	TCL1A	chr14	96176648	+	TCL1A	chr14	96176817	-
intron-3UTR	ENST00000298198	ENST00000298198		ChiTaRS3.1			AW975168	PGM2L1	chr11	74047348	-	PGM2L1	chr11	74047478	+
intron-3UTR	ENST00000392951	ENST00000392951		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000392951	ENST00000530649		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000392951	ENST00000532870		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000530649	ENST00000392951		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000530649	ENST00000530649		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000530649	ENST00000532870		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000532870	ENST00000392951		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000532870	ENST00000530649		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-3UTR	ENST00000532870	ENST00000532870		ChiTaRS3.1			BF997718	TAGLN	chr11	117074233	-	TAGLN	chr11	117075247	-
intron-intron	ENST00000397910	ENST00000394681		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
intron-intron	ENST00000397910	ENST00000274938		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
intron-intron	ENST00000380951	ENST00000394681		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
intron-intron	ENST00000380951	ENST00000274938		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
intron-intron	ENST00000596956	ENST00000394681		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
intron-intron	ENST00000596956	ENST00000274938		ChiTaRS3.1			BI013178	MUC16	chr19	8969304	+	SCUBE3	chr6	35197681	-
3UTR-3UTR	ENST00000296452	ENST00000296452		ChiTaRS3.1			T33228	BSN	chr3	49706277	-	BSN	chr3	49706105	+
3UTR-intron	ENST00000369304	ENST00000173229		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
3UTR-intron	ENST00000369304	ENST00000538852		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
3UTR-intron	ENST00000369304	ENST00000546090		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000539363	ENST00000173229		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000539363	ENST00000538852		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000539363	ENST00000546090		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000538811	ENST00000173229		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000538811	ENST00000538852		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000538811	ENST00000546090		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000481236	ENST00000173229		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000481236	ENST00000538852		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000481236	ENST00000546090		ChiTaRS3.1			BF927468	ITGA10	chr1	145543048	-	NTN1	chr17	9113325	-
intron-intron	ENST00000282488	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282488	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000282488	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282488	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282488	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282486	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282486	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000282486	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282486	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000282486	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000355460	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000355460	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000355460	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000355460	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000355460	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000493459	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000493459	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000493459	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000493459	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000493459	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324210	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324210	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000324210	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324210	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324210	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000498502	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000498502	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000498502	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000498502	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000498502	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000545754	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000545754	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000545754	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000545754	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000545754	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000357472	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000357472	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000357472	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000357472	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000357472	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324196	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324196	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000324196	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324196	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000324196	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485910	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485910	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000485910	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485910	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485910	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000463374	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000463374	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000463374	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000463374	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000463374	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000492948	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000492948	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000492948	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000492948	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000492948	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485509	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485509	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000485509	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485509	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000485509	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000461436	ENST00000430117		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000461436	ENST00000262059		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-3UTR	ENST00000461436	ENST00000548263		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000461436	ENST00000550804		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000461436	ENST00000547885		ChiTaRS3.1			BF929168	MBNL1	chr3	152049064	-	CALCOCO1	chr12	54106691	+
intron-intron	ENST00000343742	ENST00000343742		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000343742	ENST00000298910		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000343742	ENST00000481256		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000298910	ENST00000343742		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000298910	ENST00000298910		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000298910	ENST00000481256		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000481256	ENST00000343742		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000481256	ENST00000298910		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
intron-intron	ENST00000481256	ENST00000481256		ChiTaRS3.1			BX098168	LRRK2	chr12	40737412	+	LRRK2	chr12	40724937	+
3UTR-intron	ENST00000248553	ENST00000396821		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-5UTR	ENST00000248553	ENST00000444597		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-intron	ENST00000248553	ENST00000381633		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-intron	ENST00000248553	ENST00000432525		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-intron	ENST00000429938	ENST00000396821		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-5UTR	ENST00000429938	ENST00000444597		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-intron	ENST00000429938	ENST00000381633		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
3UTR-intron	ENST00000429938	ENST00000432525		ChiTaRS3.1			AI123558	HSPB1	chr7	75933544	-	DDX17	chr22	38884189	+
intron-intron	ENST00000493485	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000493485	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000494186	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
5CDS-intron	ENST00000331410	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000483089	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000448667	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000493485		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000494186		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000331410		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000483089		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000448667		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000379724	ENST00000379724		ChiTaRS3.1			AW975248	ZNF789	chr7	99084853	+	ZNF789	chr7	99084748	-
intron-intron	ENST00000303562	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000303562	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000554617	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000556324	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000535987	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555242	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555686	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000303562		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000554617		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000556324		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000535987		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000555242		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000555686		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
intron-intron	ENST00000555347	ENST00000555347		ChiTaRS3.1			BI046238	FOS	chr14	75746257	+	FOS	chr14	75746322	-
5CDS-3UTR	ENST00000593149	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000593149	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-3UTR	ENST00000248342	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000248342	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
3UTR-3UTR	ENST00000593062	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
3UTR-intron	ENST00000593062	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-3UTR	ENST00000538434	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000538434	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-3UTR	ENST00000588934	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000588934	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-3UTR	ENST00000545173	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000545173	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-3UTR	ENST00000592558	ENST00000370053		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
5CDS-intron	ENST00000592558	ENST00000540534		ChiTaRS3.1			AW498858	EIF3K	chr19	39116738	+	STMN3	chr20	62271158	+
3UTR-3CDS	ENST00000534336	ENST00000372343		ChiTaRS3.1			AA341078	MALAT1	chr11	65266739	+	IPO13	chr1	44426565	+
3UTR-intron	ENST00000534336	ENST00000372339		ChiTaRS3.1			AA341078	MALAT1	chr11	65266739	+	IPO13	chr1	44426565	+
3UTR-intron	ENST00000534336	ENST00000492152		ChiTaRS3.1			AA341078	MALAT1	chr11	65266739	+	IPO13	chr1	44426565	+
5CDS-5UTR	ENST00000422447	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000422447	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000422447	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000430553	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000430553	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000430553	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000396222	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000396222	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000396222	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000227157	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000227157	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000227157	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000540430	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000540430	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000540430	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000379412	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000379412	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000379412	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000542179	ENST00000284727		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-5UTR	ENST00000542179	ENST00000409194		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
5CDS-intron	ENST00000542179	ENST00000392541		ChiTaRS3.1			CB143668	LDHA	chr11	18425250	-	ATP5G3	chr2	176046436	-
3UTR-3UTR	ENST00000553645	ENST00000553645		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000311089		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554339		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000554871		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
3UTR-intron	ENST00000553645	ENST00000540526		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000311089	ENST00000553645		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000311089		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554339		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000554871		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000311089	ENST00000540526		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554339	ENST00000553645		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000311089		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554339		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000554871		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554339	ENST00000540526		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000554871	ENST00000553645		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000311089		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554339		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000554871		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000554871	ENST00000540526		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3UTR	ENST00000540526	ENST00000553645		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000311089		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554339		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000554871		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-intron	ENST00000540526	ENST00000540526		ChiTaRS3.1			AI458668	DNAL1	chr14	74166756	+	DNAL1	chr14	74165423	+
intron-3CDS	ENST00000280527	ENST00000383440		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-3CDS	ENST00000280527	ENST00000262126		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-intron	ENST00000280527	ENST00000540578		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-intron	ENST00000280527	ENST00000400020		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-3CDS	ENST00000473403	ENST00000383440		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-3CDS	ENST00000473403	ENST00000262126		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-intron	ENST00000473403	ENST00000540578		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-intron	ENST00000473403	ENST00000400020		ChiTaRS3.1			BG623368	CRIM1	chr2	36630721	+	ANKRD12	chr18	9256127	+
intron-intron	ENST00000483195	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000483195	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000394019	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000423644	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000346834	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000359484	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000357822	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000358683	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377632	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000483195		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000394019		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000423644		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000346834		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000359484		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000357822		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000358683		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000377632		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-intron	ENST00000377634	ENST00000377634		ChiTaRS3.1			AA452938	SLC4A5	chr2	74459655	-	SLC4A5	chr2	74462645	-
intron-3UTR	ENST00000247182	ENST00000247182		ChiTaRS3.1			BU676008	SIX1	chr14	61111516	+	SIX1	chr14	61111681	-
intron-intron	ENST00000247182	ENST00000554986		ChiTaRS3.1			BU676008	SIX1	chr14	61111516	+	SIX1	chr14	61111681	-
intron-3UTR	ENST00000554986	ENST00000247182		ChiTaRS3.1			BU676008	SIX1	chr14	61111516	+	SIX1	chr14	61111681	-
intron-intron	ENST00000554986	ENST00000554986		ChiTaRS3.1			BU676008	SIX1	chr14	61111516	+	SIX1	chr14	61111681	-
intron-intron	ENST00000333942	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000333942	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000358365	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000583994	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000545287	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000354266	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000394692	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000581094	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000333942		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000358365		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000583994		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000545287		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000354266		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000394692		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000581094		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000580976	ENST00000580976		ChiTaRS3.1			BG994788	RHOT1	chr17	30500848	-	RHOT1	chr17	30502383	-
intron-intron	ENST00000388922	ENST00000409598		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000424281		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000304527		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000455740		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000409252		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000514152		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000427414		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000388922	ENST00000604030		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000409598		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000424281		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000304527		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000455740		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000409252		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000514152		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000427414		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-intron	ENST00000550683	ENST00000604030		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000409598		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000424281		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000304527		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000455740		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000409252		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000514152		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000427414		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000419526	ENST00000604030		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000409598		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000424281		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000304527		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000455740		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000409252		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000514152		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000427414		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
intron-intron	ENST00000550084	ENST00000604030		ChiTaRS3.1			BG013238	ACVRL1	chr12	52315668	-	SH3D19	chr4	152047442	-
3UTR-3UTR	ENST00000340250	ENST00000356978		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000340250	ENST00000447653		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-intron	ENST00000340250	ENST00000555132		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000340250	ENST00000553542		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000340250	ENST00000544280		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000382361	ENST00000356978		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000382361	ENST00000447653		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-intron	ENST00000382361	ENST00000555132		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000382361	ENST00000553542		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
3UTR-3UTR	ENST00000382361	ENST00000544280		ChiTaRS3.1			M78058	FSCN1	chr7	5646011	-	CALM1	chr14	90871328	+
Frame-shit	ENST00000294304	ENST00000294304		ChiTaRS3.1			BG960848	LRP5	chr11	68197135	+	LRP5	chr11	68192733	-
5CDS-intron	ENST00000294304	ENST00000529481		ChiTaRS3.1			BG960848	LRP5	chr11	68197135	+	LRP5	chr11	68192733	-
intron-3CDS	ENST00000529481	ENST00000294304		ChiTaRS3.1			BG960848	LRP5	chr11	68197135	+	LRP5	chr11	68192733	-
intron-intron	ENST00000529481	ENST00000529481		ChiTaRS3.1			BG960848	LRP5	chr11	68197135	+	LRP5	chr11	68192733	-
intron-3CDS	ENST00000395074	ENST00000313654		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000395074	ENST00000399516		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000395074	ENST00000269217		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000395074	ENST00000587184		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-intron	ENST00000395074	ENST00000588770		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528954	ENST00000313654		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528954	ENST00000399516		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528954	ENST00000269217		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528954	ENST00000587184		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-intron	ENST00000528954	ENST00000588770		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528489	ENST00000313654		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528489	ENST00000399516		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528489	ENST00000269217		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-3CDS	ENST00000528489	ENST00000587184		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-intron	ENST00000528489	ENST00000588770		ChiTaRS3.1			X77598	LPXN	chr11	58343306	+	LAMA3	chr18	21464735	+
intron-intron	ENST00000465139	ENST00000377837		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000465139	ENST00000377836		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000465139	ENST00000471190		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-3UTR	ENST00000465139	ENST00000377834		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000465139	ENST00000487437		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000465139	ENST00000489730		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000483551	ENST00000377837		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000483551	ENST00000377836		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000483551	ENST00000471190		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-3UTR	ENST00000483551	ENST00000377834		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000483551	ENST00000487437		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000483551	ENST00000489730		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000560303	ENST00000377837		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000560303	ENST00000377836		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000560303	ENST00000471190		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-3UTR	ENST00000560303	ENST00000377834		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000560303	ENST00000487437		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000560303	ENST00000489730		ChiTaRS3.1			BG002858	ANP32A	chr15	69103700	-	HES2	chr1	6476322	-
intron-intron	ENST00000371068	ENST00000392580		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000371068	ENST00000312527		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000371068	ENST00000537389		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-5UTR	ENST00000371068	ENST00000524765		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000371068	ENST00000531510		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000491749	ENST00000392580		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000491749	ENST00000312527		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000491749	ENST00000537389		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-5UTR	ENST00000491749	ENST00000524765		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000491749	ENST00000531510		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000433625	ENST00000392580		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000433625	ENST00000312527		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000433625	ENST00000537389		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-5UTR	ENST00000433625	ENST00000524765		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000433625	ENST00000531510		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000538167	ENST00000392580		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000538167	ENST00000312527		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000538167	ENST00000537389		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-5UTR	ENST00000538167	ENST00000524765		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
intron-intron	ENST00000538167	ENST00000531510		ChiTaRS3.1			T05978	EFHC1	chr6	52285577	+	B3GAT1	chr11	134259170	+
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000538546	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535623	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000535011	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000542996	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000249364	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000449187	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000449187		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000479257	ENST00000479257		ChiTaRS3.1			AA524888	CALU	chr7	128409485	+	CALU	chr7	128409552	-
3UTR-3UTR	ENST00000578646	ENST00000578646		ChiTaRS3.1			BM930378	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
3UTR-3UTR	ENST00000578646	ENST00000261537		ChiTaRS3.1			BM930378	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
5CDS-3UTR	ENST00000261537	ENST00000578646		ChiTaRS3.1			BM930378	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
5CDS-3UTR	ENST00000261537	ENST00000261537		ChiTaRS3.1			BM930378	MIB1	chr18	19359647	+	MIB1	chr18	19345728	+
intron-3CDS	ENST00000260356	ENST00000304992		ChiTaRS3.1			BI046008	THBS1	chr15	39875351	+	PRPF8	chr17	1584325	-
intron-3CDS	ENST00000260356	ENST00000572621		ChiTaRS3.1			BI046008	THBS1	chr15	39875351	+	PRPF8	chr17	1584325	-
intron-intron	ENST00000260356	ENST00000575116		ChiTaRS3.1			BI046008	THBS1	chr15	39875351	+	PRPF8	chr17	1584325	-
intron-intron	ENST00000333190	ENST00000280684		ChiTaRS3.1			BF447908	ZNF804B	chr7	88408962	-	KCNA6	chr12	4923266	+
intron-3UTR	ENST00000333190	ENST00000433855		ChiTaRS3.1			BF447908	ZNF804B	chr7	88408962	-	KCNA6	chr12	4923266	+
intron-intron	ENST00000263280	ENST00000315183		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000263280	ENST00000562829		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000263280	ENST00000395799		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000263280	ENST00000432286		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000391910	ENST00000315183		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000391910	ENST00000562829		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000391910	ENST00000395799		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000391910	ENST00000432286		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000539396	ENST00000315183		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000539396	ENST00000562829		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000539396	ENST00000395799		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000539396	ENST00000432286		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000594357	ENST00000315183		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000594357	ENST00000562829		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000594357	ENST00000395799		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-intron	ENST00000594357	ENST00000432286		ChiTaRS3.1			AA962358	STRN4	chr19	47222828	+	TNRC6A	chr16	24756977	-
intron-3UTR	ENST00000395305	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000395305	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000395303	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000395303	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000374843	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000374843	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000464392	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000464392	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000451753	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000451753	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000452330	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000452330	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000434337	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000434337	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000490859	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000490859	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000452703	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000452703	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000451148	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000451148	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000453490	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000453490	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000466446	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000466446	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000443447	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000443447	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000420931	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000420931	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000439054	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000439054	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000467732	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000467732	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000457285	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000457285	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000419041	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000419041	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000441375	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000441375	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000462225	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000462225	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000435503	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000435503	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000452434	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000452434	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000450601	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000450601	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000479292	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000479292	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000420299	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000420299	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000432991	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000432991	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000452615	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000452615	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000494230	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000494230	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000383228	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000383228	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000383227	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000383227	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000383230	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000383230	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-3UTR	ENST00000486785	ENST00000272542		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000486785	ENST00000480984		ChiTaRS3.1			BG996078	HLA-DMA	chr6	4347159	-	SLC20A1	chr2	113421280	-
intron-intron	ENST00000445193	ENST00000267485		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000445193	ENST00000334342		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000477305	ENST00000267485		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000477305	ENST00000334342		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000295959	ENST00000267485		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000295959	ENST00000334342		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000466547	ENST00000267485		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000466547	ENST00000334342		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000528153	ENST00000267485		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
intron-intron	ENST00000528153	ENST00000334342		ChiTaRS3.1			BF106328	RPP14	chr3	58295333	+	C14orf37	chr14	58736850	+
5CDS-intron	ENST00000321143	ENST00000273221		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000321143	ENST00000473088		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000380763	ENST00000273221		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000380763	ENST00000473088		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000380762	ENST00000273221		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000380762	ENST00000473088		ChiTaRS3.1			BF857908	HCCS	chrX	11130199	-	IQSEC1	chr3	13020548	+
5CDS-intron	ENST00000167462	ENST00000371227		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371249		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000306402		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000353505		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371246		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000347291		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000393949		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371247		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000607232		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371245		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000361941		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000277982		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000354106		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371239		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371241		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000474353		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371227		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371249		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000306402		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000353505		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371246		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000347291		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000393949		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371247		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000607232		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371245		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000361941		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000277982		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000354106		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371239		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371241		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000474353		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371227		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371249		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000306402		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000353505		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371246		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000347291		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000393949		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371247		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000607232		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371245		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000361941		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000277982		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000354106		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371239		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371241		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000474353		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371227		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371249		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000306402		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000353505		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371246		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000347291		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000393949		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371247		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000607232		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371245		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000361941		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000277982		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000354106		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371239		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371241		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000474353		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371227		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371249		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000306402		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000353505		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371246		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000347291		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000393949		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371247		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000607232		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371245		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000361941		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000277982		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000354106		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371239		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371241		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000474353		ChiTaRS3.1			BF870758	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-5UTR	ENST00000382952	ENST00000382952		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-intron	ENST00000382952	ENST00000290921		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000382952	ENST00000510568		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000382952	ENST00000515690		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000290921	ENST00000382952		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-intron	ENST00000290921	ENST00000290921		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000290921	ENST00000510568		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000290921	ENST00000515690		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000510568	ENST00000382952		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-intron	ENST00000510568	ENST00000290921		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000510568	ENST00000510568		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000510568	ENST00000515690		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000515690	ENST00000382952		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-intron	ENST00000515690	ENST00000290921		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000515690	ENST00000510568		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-5UTR	ENST00000515690	ENST00000515690		ChiTaRS3.1			AA506318	CTBP1	chr4	1235951	+	CTBP1	chr4	1235256	+
intron-intron	ENST00000553331	ENST00000225823		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000553331	ENST00000359872		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000553331	ENST00000448983		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
5CDS-intron	ENST00000216832	ENST00000225823		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
5CDS-intron	ENST00000216832	ENST00000359872		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
5CDS-intron	ENST00000216832	ENST00000448983		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000556530	ENST00000225823		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000556530	ENST00000359872		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000556530	ENST00000448983		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000557680	ENST00000225823		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000557680	ENST00000359872		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
intron-intron	ENST00000557680	ENST00000448983		ChiTaRS3.1			BI035008	PNN	chr14	39650574	-	ASIC2	chr17	32409756	-
3UTR-3UTR	ENST00000341049	ENST00000316316		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000341049	ENST00000505485		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000341049	ENST00000316068		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-3UTR	ENST00000393470	ENST00000316316		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-intron	ENST00000393470	ENST00000505485		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-intron	ENST00000393470	ENST00000316068		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-3UTR	ENST00000405348	ENST00000316316		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000405348	ENST00000505485		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000405348	ENST00000316068		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-3UTR	ENST00000393468	ENST00000316316		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-intron	ENST00000393468	ENST00000505485		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
intron-intron	ENST00000393468	ENST00000316068		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-3UTR	ENST00000393467	ENST00000316316		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000393467	ENST00000505485		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
3UTR-intron	ENST00000393467	ENST00000316068		ChiTaRS3.1			BF196928	CAV1	chr7	116201048	-	MCM9	chr6	119134792	+
5CDS-3UTR	ENST00000261674	ENST00000261674		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
5CDS-3UTR	ENST00000261674	ENST00000541286		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
5CDS-3UTR	ENST00000261674	ENST00000539506		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
5CDS-3UTR	ENST00000541286	ENST00000261674		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
5CDS-3UTR	ENST00000541286	ENST00000541286		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
5CDS-3UTR	ENST00000541286	ENST00000539506		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
3UTR-3UTR	ENST00000539506	ENST00000261674		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
3UTR-3UTR	ENST00000539506	ENST00000541286		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
3UTR-3UTR	ENST00000539506	ENST00000539506		ChiTaRS3.1			AW385778	SFSWAP	chr12	132283655	+	SFSWAP	chr12	132284034	-
intron-intron	ENST00000216281	ENST00000323961		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000528851		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000420732		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000530839		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000529054		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000426738		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000412309		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000533023		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000216281	ENST00000529906		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-3UTR	ENST00000216281	ENST00000532169		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000323961		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000528851		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000420732		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000530839		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000529054		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000426738		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000412309		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000533023		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000334701	ENST00000529906		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-3UTR	ENST00000334701	ENST00000532169		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000323961		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000528851		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000420732		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000530839		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000529054		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000426738		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000412309		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000533023		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000441629	ENST00000529906		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-3UTR	ENST00000441629	ENST00000532169		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000323961		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000528851		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000420732		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000530839		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000529054		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000426738		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000412309		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000533023		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000558600	ENST00000529906		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-3UTR	ENST00000558600	ENST00000532169		ChiTaRS3.1			BP378998	HSP90AA1	chr14	102551067	-	MS4A6A	chr11	59947139	-
intron-intron	ENST00000504825	ENST00000330909		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
intron-intron	ENST00000504825	ENST00000402939		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
intron-intron	ENST00000504825	ENST00000483466		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
intron-intron	ENST00000504825	ENST00000497477		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
intron-intron	ENST00000504825	ENST00000470990		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
3UTR-intron	ENST00000304915	ENST00000330909		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
3UTR-intron	ENST00000304915	ENST00000402939		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
3UTR-intron	ENST00000304915	ENST00000483466		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
3UTR-intron	ENST00000304915	ENST00000497477		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
3UTR-intron	ENST00000304915	ENST00000470990		ChiTaRS3.1			BP333058	SMR3B	chr4	71255923	+	MAGI1	chr3	65910595	-
intron-intron	ENST00000256861	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000256861	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000256861	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000256861	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000256861	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000256861	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397146	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000298441	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000446830	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000434980	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000256861		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000397146		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000298441		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000446830		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000434980		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
intron-intron	ENST00000397145	ENST00000397145		ChiTaRS3.1			BI055168	ITIH5	chr10	7663817	-	ITIH5	chr10	7663766	+
Frame-shit	ENST00000328908	ENST00000328908		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000328908	ENST00000397588		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000449732		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000343762		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000328908		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000397588		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000449732		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000343762		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000328908		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000397588		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000449732		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000343762		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000328908		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000397588		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000449732		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000343762		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000328908		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000397588		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000449732		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000343762		ChiTaRS3.1			BQ379288	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000234590	ENST00000234590		ChiTaRS3.1			U88968	ENO1	chr1	8921062	-	ENO1	chr1	8938723	-
3UTR-3UTR	ENST00000296666	ENST00000296666		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-intron	ENST00000296666	ENST00000442138		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-3UTR	ENST00000296666	ENST00000512635		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-intron	ENST00000296666	ENST00000513427		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-3UTR	ENST00000442138	ENST00000296666		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-intron	ENST00000442138	ENST00000442138		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-3UTR	ENST00000442138	ENST00000512635		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-intron	ENST00000442138	ENST00000513427		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-3UTR	ENST00000512635	ENST00000296666		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-intron	ENST00000512635	ENST00000442138		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-3UTR	ENST00000512635	ENST00000512635		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
3UTR-intron	ENST00000512635	ENST00000513427		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-3UTR	ENST00000513427	ENST00000296666		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-intron	ENST00000513427	ENST00000442138		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-3UTR	ENST00000513427	ENST00000512635		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-intron	ENST00000513427	ENST00000513427		ChiTaRS3.1			CN415578	PRRC1	chr5	126889800	-	PRRC1	chr5	126889850	+
intron-3UTR	ENST00000238616	ENST00000238616		ChiTaRS3.1			AA262378	NEK9	chr14	75549325	+	NEK9	chr14	75549171	-
intron-intron	ENST00000238616	ENST00000555763		ChiTaRS3.1			AA262378	NEK9	chr14	75549325	+	NEK9	chr14	75549171	-
intron-3UTR	ENST00000555763	ENST00000238616		ChiTaRS3.1			AA262378	NEK9	chr14	75549325	+	NEK9	chr14	75549171	-
intron-intron	ENST00000555763	ENST00000555763		ChiTaRS3.1			AA262378	NEK9	chr14	75549325	+	NEK9	chr14	75549171	-
intron-intron	ENST00000328041	ENST00000535924		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000328041	ENST00000483110		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000328041	ENST00000284031		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000328041	ENST00000539042		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000328041	ENST00000426972		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000328041	ENST00000542148		ChiTaRS3.1			BG981308	SLC24A3	chr20	19516593	-	DDAH1	chr1	85955293	-
intron-intron	ENST00000270066	ENST00000546309		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000270066	ENST00000397244		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000270066	ENST00000388870		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000270066	ENST00000297792		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000601170	ENST00000546309		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000601170	ENST00000397244		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000601170	ENST00000388870		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
intron-intron	ENST00000601170	ENST00000297792		ChiTaRS3.1			BQ067678	SMG9	chr19	44258892	-	KDM1B	chr6	18212731	+
3UTR-intron	ENST00000416904	ENST00000257897		ChiTaRS3.1			AA883778	ZNF740	chr12	53582689	-	AGAP2	chr12	58135206	+
3UTR-intron	ENST00000416904	ENST00000547588		ChiTaRS3.1			AA883778	ZNF740	chr12	53582689	-	AGAP2	chr12	58135206	+
intron-intron	ENST00000551514	ENST00000257897		ChiTaRS3.1			AA883778	ZNF740	chr12	53582689	-	AGAP2	chr12	58135206	+
intron-intron	ENST00000551514	ENST00000547588		ChiTaRS3.1			AA883778	ZNF740	chr12	53582689	-	AGAP2	chr12	58135206	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			AJ494735	ETV6	chr12	12035545	+	RUNX1	chr21	36264863	-
3UTR-intron	ENST00000263097	ENST00000488813		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000263097	ENST00000395879		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000263097	ENST00000395880		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000263097	ENST00000310564		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000263097	ENST00000223336		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000606983	ENST00000488813		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000606983	ENST00000395879		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000606983	ENST00000395880		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000606983	ENST00000310564		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000606983	ENST00000223336		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000348419	ENST00000488813		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000348419	ENST00000395879		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000348419	ENST00000395880		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000348419	ENST00000310564		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-intron	ENST00000348419	ENST00000223336		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000565096	ENST00000488813		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000565096	ENST00000395879		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000565096	ENST00000395880		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000565096	ENST00000310564		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000565096	ENST00000223336		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000562958	ENST00000488813		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000562958	ENST00000395879		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000562958	ENST00000395880		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000562958	ENST00000310564		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
intron-intron	ENST00000562958	ENST00000223336		ChiTaRS3.1			DB333918	CNN2	chr19	1038776	-	COA1	chr7	43678423	+
3UTR-3CDS	ENST00000261313	ENST00000286713		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
3UTR-3CDS	ENST00000261313	ENST00000538954		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
3UTR-intron	ENST00000261313	ENST00000347359		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
intron-3CDS	ENST00000542939	ENST00000286713		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
intron-3CDS	ENST00000542939	ENST00000538954		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
intron-intron	ENST00000542939	ENST00000347359		ChiTaRS3.1			AI064908	PEBP1	chr12	118583132	-	STOM	chr9	124110409	-
intron-intron	ENST00000418530	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000418530	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000256707	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000427284	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000473731	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000319688	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000375999		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000417793		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000358897		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000375998		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000375995		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000401090		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000471347		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-intron	ENST00000436566	ENST00000314740		ChiTaRS3.1			BF917138	KIDINS220	chr2	8885289	+	FHAD1	chr1	15663836	+
intron-3CDS	ENST00000432054	ENST00000225792		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000432054	ENST00000450599		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000432054	ENST00000578804		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000432054	ENST00000580026		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-3CDS	ENST00000393238	ENST00000225792		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000393238	ENST00000450599		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000393238	ENST00000578804		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000393238	ENST00000580026		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-3CDS	ENST00000426664	ENST00000225792		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000426664	ENST00000450599		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000426664	ENST00000578804		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000426664	ENST00000580026		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-3CDS	ENST00000329333	ENST00000225792		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000329333	ENST00000450599		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000329333	ENST00000578804		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000329333	ENST00000580026		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-3CDS	ENST00000515024	ENST00000225792		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000515024	ENST00000450599		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000515024	ENST00000578804		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000515024	ENST00000580026		ChiTaRS3.1			BG955538	TMCC1	chr3	129392259	+	DDX5	chr17	62500180	-
intron-intron	ENST00000441448	ENST00000441448		ChiTaRS3.1			BF734348	RPF2	chr6	111322984	-	RPF2	chr6	111322850	+
intron-intron	ENST00000298310	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000298310	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000382135	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000545773	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556925	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000546046	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000566780		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000406884		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000539474		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000402655		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000408984		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000355860		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000565791		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000556672	ENST00000569818		ChiTaRS3.1			AW874698	NEMF	chr14	50096467	-	WWOX	chr16	78272007	-
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BI014308	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3CDS	ENST00000458501	ENST00000458501		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000458501	ENST00000379644		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000297798		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000521576		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000458501		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000379644		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000297798		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000521576		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000458501		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000379644		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000297798		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000521576		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000458501		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000379644		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000297798		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000521576		ChiTaRS3.1			CN256928	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000369183	ENST00000378509		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000369183	ENST00000466599		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000469758	ENST00000378509		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000469758	ENST00000466599		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000369172	ENST00000378509		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000369172	ENST00000466599		ChiTaRS3.1			DB301188	FAM204A	chr10	120069747	+	SLC35B4	chr7	133989824	-
intron-intron	ENST00000314583	ENST00000380050		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000314583	ENST00000265741		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000314583	ENST00000406263		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000314583	ENST00000436577		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000314583	ENST00000496279		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000428394	ENST00000380050		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000428394	ENST00000265741		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000428394	ENST00000406263		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000428394	ENST00000436577		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000428394	ENST00000496279		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000473883	ENST00000380050		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000473883	ENST00000265741		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000473883	ENST00000406263		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000473883	ENST00000436577		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-intron	ENST00000473883	ENST00000496279		ChiTaRS3.1			AI656818	HCLS1	chr3	121350396	+	CDK14	chr7	90386307	-
intron-3CDS	ENST00000440909	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000440909	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000440909	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000440909	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000448921	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000448921	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000437397	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000437397	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000355814	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000355814	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393087	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000393087	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000393088	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000393088	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000404814	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000404814	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000449399	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000449399	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000402629	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000402629	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000310118		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000435761		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-3CDS	ENST00000555289	ENST00000439383		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000555289	ENST00000459910		ChiTaRS3.1			AI110868	SERPINA1	chr14	94854926	+	PSMD2	chr3	184026505	+
intron-intron	ENST00000372989	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000372989	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000491602	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000491602	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000454200	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000454200	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000276141	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000276141	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000455616	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000455616	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000263033	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000263033	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000372981	ENST00000481038		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-intron	ENST00000372981	ENST00000379019		ChiTaRS3.1			AW813838	SYTL4	chrX	99972080	+	GPCPD1	chr20	5568875	-
intron-3CDS	ENST00000400256	ENST00000400256		ChiTaRS3.1			BE929798	COLEC12	chr18	333106	+	COLEC12	chr18	346696	-
Frame-shit	ENST00000392957	ENST00000238571		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
Frame-shit	ENST00000392957	ENST00000325680		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000392957	ENST00000552421		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000392957	ENST00000546901		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
Frame-shit	ENST00000442129	ENST00000238571		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
Frame-shit	ENST00000442129	ENST00000325680		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000442129	ENST00000552421		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000442129	ENST00000546901		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
Frame-shit	ENST00000411471	ENST00000238571		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
Frame-shit	ENST00000411471	ENST00000325680		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000411471	ENST00000552421		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000411471	ENST00000546901		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
3UTR-3CDS	ENST00000476059	ENST00000238571		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
3UTR-3CDS	ENST00000476059	ENST00000325680		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
3UTR-intron	ENST00000476059	ENST00000552421		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
3UTR-intron	ENST00000476059	ENST00000546901		ChiTaRS3.1			DB304338	EPHB6	chr7	142568562	-	YLPM1	chr14	75265473	-
5CDS-intron	ENST00000287766	ENST00000404338		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
5CDS-intron	ENST00000287766	ENST00000598548		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
intron-intron	ENST00000462473	ENST00000404338		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
intron-intron	ENST00000462473	ENST00000598548		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
5CDS-intron	ENST00000536032	ENST00000404338		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
5CDS-intron	ENST00000536032	ENST00000598548		ChiTaRS3.1			BQ300148	SLC6A1	chr3	11075392	-	ARHGAP35	chr19	47487521	-
intron-intron	ENST00000306156	ENST00000306156		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000306156	ENST00000467135		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000306156	ENST00000394874		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000306156		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000467135		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000394874		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000306156		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000467135		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000394874		ChiTaRS3.1			BI056548	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
3UTR-intron	ENST00000313949	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
intron-intron	ENST00000371098	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
3UTR-intron	ENST00000371075	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000371100	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
intron-intron	ENST00000371099	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000371102	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
3UTR-intron	ENST00000464624	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
intron-intron	ENST00000306120	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000371095	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000371085	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000354359	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000265620	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
5CDS-intron	ENST00000306090	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
intron-intron	ENST00000371081	ENST00000329314		ChiTaRS3.1			BU070138	GNAS	chr20	57485045	-	TRIM61	chr4	165878136	+
intron-intron	ENST00000265136	ENST00000265136		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000395542		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000395540		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000265136	ENST00000441453		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000265136		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000395542		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000395540		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395542	ENST00000441453		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000265136		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000395542		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000395540		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000395540	ENST00000441453		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000265136		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000395542		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000395540		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000441453	ENST00000441453		ChiTaRS3.1			AW295178	COBL	chr7	51357167	+	COBL	chr7	51299873	+
intron-intron	ENST00000377047	ENST00000377047		ChiTaRS3.1			DA568128	GPC6	chr13	93927295	+	GPC6	chr13	93906462	+
intron-intron	ENST00000502346	ENST00000332142		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000502346	ENST00000328032		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000502346	ENST00000477019		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000511450	ENST00000332142		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000511450	ENST00000328032		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000511450	ENST00000477019		ChiTaRS3.1			BF230028	TMEM167A	chr5	82363738	-	KCNH7	chr2	163339722	+
intron-intron	ENST00000395324	ENST00000395324		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000395324	ENST00000229022		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000395324	ENST00000549336		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000395324	ENST00000550325		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000395324	ENST00000535672		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000229022	ENST00000395324		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000229022	ENST00000229022		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000229022	ENST00000549336		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000229022	ENST00000550325		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000229022	ENST00000535672		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000549336	ENST00000395324		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000549336	ENST00000229022		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000549336	ENST00000549336		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000549336	ENST00000550325		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000549336	ENST00000535672		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000550325	ENST00000395324		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000550325	ENST00000229022		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000550325	ENST00000549336		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000550325	ENST00000550325		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000550325	ENST00000535672		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000535672	ENST00000395324		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000535672	ENST00000229022		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000535672	ENST00000549336		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000535672	ENST00000550325		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000535672	ENST00000535672		ChiTaRS3.1			BX956498	VDR	chr12	48244645	+	VDR	chr12	48244951	-
intron-intron	ENST00000395388	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000395388	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000395388	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000395388	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000395388	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000374982	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000374982	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000374982	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000374982	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383127	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383127	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383127	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383127	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000459705	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000459705	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000459705	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000459705	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000434866	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000434866	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000434866	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000434866	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000416883	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000416883	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000416883	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000416883	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000481943	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000481943	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000481943	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000481943	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000411505	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000411505	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000411505	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000411505	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000414698	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000414698	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000414698	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000414698	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000546379	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000546379	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000546379	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000546379	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000493431	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000493431	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000493431	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000493431	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000418111	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000418111	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000418111	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000418111	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383259	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383259	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383259	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383259	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000551750	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000551750	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000551750	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000551750	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000461633	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000461633	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000461633	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000461633	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383258	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383258	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000383258	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000383258	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000442960	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000442960	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000442960	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000442960	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000549531	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000549531	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000549531	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000549531	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000482781	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000482781	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000482781	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000482781	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000415767	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000415767	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000415767	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000415767	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000411524	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000411524	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000411524	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000411524	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000553193	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000553193	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000553193	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000553193	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000498597	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000498597	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-intron	ENST00000498597	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
5CDS-3UTR	ENST00000498597	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000395388		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000374982		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000383127		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000459705		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000434866		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000416883		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000481943		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000411505		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000414698		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000546379		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000493431		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000418111		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000383259		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000551750		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000461633		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000383258		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000442960		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000549531		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000482781		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000415767		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000427753	ENST00000411524		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000427753	ENST00000553193		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-intron	ENST00000427753	ENST00000498597		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3UTR	ENST00000427753	ENST00000427753		ChiTaRS3.1			BF350328	HLA-DRA	chr6	3757637	-	HLA-DRA	chr6	3759449	-
intron-3CDS	ENST00000304749	ENST00000353331		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-3CDS	ENST00000304749	ENST00000531224		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-3CDS	ENST00000304749	ENST00000527536		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000304749	ENST00000530767		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000304749	ENST00000527759		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000304749	ENST00000031135		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000304749	ENST00000529917		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000304749	ENST00000392348		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-3CDS	ENST00000398402	ENST00000353331		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-3CDS	ENST00000398402	ENST00000531224		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-3CDS	ENST00000398402	ENST00000527536		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000398402	ENST00000530767		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000398402	ENST00000527759		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000398402	ENST00000031135		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000398402	ENST00000529917		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000398402	ENST00000392348		ChiTaRS3.1			BX648878	CST1	chr20	23728288	+	BCLAF1	chr6	136597563	-
intron-intron	ENST00000371873	ENST00000264279		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-intron	ENST00000371873	ENST00000467734		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-intron	ENST00000450808	ENST00000264279		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-intron	ENST00000450808	ENST00000467734		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-intron	ENST00000471289	ENST00000264279		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-intron	ENST00000471289	ENST00000467734		ChiTaRS3.1			BF891408	CMPK1	chr1	47827818	-	NOP58	chr2	203163103	+
intron-3UTR	ENST00000354234	ENST00000287908		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000354234	ENST00000394626		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000354234	ENST00000394622		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000354234	ENST00000394632		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000354234	ENST00000394621		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000354234	ENST00000402625		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000354234	ENST00000394629		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000317257	ENST00000287908		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000317257	ENST00000394626		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000317257	ENST00000394622		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000317257	ENST00000394632		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000317257	ENST00000394621		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000317257	ENST00000402625		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000317257	ENST00000394629		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000481439	ENST00000287908		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000481439	ENST00000394626		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000481439	ENST00000394622		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000481439	ENST00000394632		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000481439	ENST00000394621		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000481439	ENST00000402625		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000481439	ENST00000394629		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000258672	ENST00000287908		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000258672	ENST00000394626		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000258672	ENST00000394622		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000258672	ENST00000394632		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000258672	ENST00000394621		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000258672	ENST00000402625		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-intron	ENST00000258672	ENST00000394629		ChiTaRS3.1			AI768908	SETDB2	chr13	50064729	-	STEAP2	chr7	89863631	-
intron-3UTR	ENST00000311417	ENST00000311417		ChiTaRS3.1			BF346458	ZMAT3	chr3	178742752	+	ZMAT3	chr3	178742726	-
intron-3UTR	ENST00000311417	ENST00000432729		ChiTaRS3.1			BF346458	ZMAT3	chr3	178742752	+	ZMAT3	chr3	178742726	-
intron-3UTR	ENST00000432729	ENST00000311417		ChiTaRS3.1			BF346458	ZMAT3	chr3	178742752	+	ZMAT3	chr3	178742726	-
intron-3UTR	ENST00000432729	ENST00000432729		ChiTaRS3.1			BF346458	ZMAT3	chr3	178742752	+	ZMAT3	chr3	178742726	-
intron-intron	ENST00000309311	ENST00000434618		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000475304		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000489157		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000426633		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000456592		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000467834		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000374568		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000374572		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000395114		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000550330		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000552779		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000480059		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000437315		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000417059		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000456807		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000549949		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000553235		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000495024		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000383067		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000383066		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000551943		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000383065		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000546700		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000550794		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000461837		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000412144		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000383198		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000548408		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000383197		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000550915		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000309311	ENST00000549142		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000434618		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000475304		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000489157		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000426633		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000456592		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000467834		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000374568		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000374572		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000395114		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000550330		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000552779		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000480059		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000437315		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000417059		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000456807		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000549949		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000553235		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000495024		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000383067		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000383066		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000551943		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000383065		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000546700		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000550794		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000461837		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000412144		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000383198		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000548408		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000383197		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000550915		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000600720	ENST00000549142		ChiTaRS3.1			AI905878	EEF2	chr19	3980927	+	TAPBP	chr6	4746551	+
intron-intron	ENST00000498508	ENST00000259371		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000498508	ENST00000408936		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000498508	ENST00000309989		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000498508	ENST00000487716		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000366958	ENST00000259371		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000366958	ENST00000408936		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000366958	ENST00000309989		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000366958	ENST00000487716		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000435016	ENST00000259371		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000435016	ENST00000408936		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000435016	ENST00000309989		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000435016	ENST00000487716		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000261454	ENST00000259371		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000261454	ENST00000408936		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000261454	ENST00000309989		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000261454	ENST00000487716		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000607726	ENST00000259371		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000607726	ENST00000408936		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000607726	ENST00000309989		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-intron	ENST00000607726	ENST00000487716		ChiTaRS3.1			BG980918	PROX1	chr1	214196646	+	DAB2IP	chr9	124496803	-
intron-3UTR	ENST00000373825	ENST00000373825		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373825	ENST00000423325		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373825	ENST00000373822		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-intron	ENST00000373825	ENST00000373821		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000423325	ENST00000373825		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000423325	ENST00000423325		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000423325	ENST00000373822		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-intron	ENST00000423325	ENST00000373821		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373822	ENST00000373825		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373822	ENST00000423325		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373822	ENST00000373822		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-intron	ENST00000373822	ENST00000373821		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373821	ENST00000373825		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373821	ENST00000423325		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-3UTR	ENST00000373821	ENST00000373822		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
intron-intron	ENST00000373821	ENST00000373821		ChiTaRS3.1			AL117648	SRPK1	chr6	35801792	+	SRPK1	chr6	35801777	-
Frame-shit	ENST00000536169	ENST00000536169		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000536169	ENST00000374051		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000536169	ENST00000358741		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
5CDS-3UTR	ENST00000536169	ENST00000476589		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000374051	ENST00000536169		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000374051	ENST00000374051		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000374051	ENST00000358741		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
5CDS-3UTR	ENST00000374051	ENST00000476589		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000358741	ENST00000536169		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000358741	ENST00000374051		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
Frame-shit	ENST00000358741	ENST00000358741		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
5CDS-3UTR	ENST00000358741	ENST00000476589		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
3UTR-3CDS	ENST00000476589	ENST00000536169		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
3UTR-3CDS	ENST00000476589	ENST00000374051		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
3UTR-3CDS	ENST00000476589	ENST00000358741		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
3UTR-3UTR	ENST00000476589	ENST00000476589		ChiTaRS3.1			BQ340118	NLGN3	chrX	70387188	+	NLGN3	chrX	70387355	-
intron-3UTR	ENST00000549578	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549578	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549578	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000360579	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000360579	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000552130	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000552130	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000447578	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000447578	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000546588	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000546588	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000549970	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549970	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000549578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000360579		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000552130		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000447578		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3UTR	ENST00000551655	ENST00000546588		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000551655	ENST00000549970		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			AA411588	VPS29	chr12	110930911	+	VPS29	chr12	110929600	-
intron-3CDS	ENST00000455600	ENST00000456543		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000455600	ENST00000449787		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000455600	ENST00000423893		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000455600	ENST00000332800		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3CDS	ENST00000468041	ENST00000456543		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000468041	ENST00000449787		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000468041	ENST00000423893		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
intron-3UTR	ENST00000468041	ENST00000332800		ChiTaRS3.1			BC020828	RUSC2	chr9	35508705	+	GH2	chr17	61957624	-
5CDS-5UTR	ENST00000320985	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000320985	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-intron	ENST00000320985	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000361642	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-intron	ENST00000361642	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-5UTR	ENST00000559858	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
3UTR-intron	ENST00000559858	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000560721	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-intron	ENST00000560721	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-5UTR	ENST00000542815	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
5CDS-intron	ENST00000542815	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000331737		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000361310		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000413025		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000436087		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000452305		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000442986		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000538351		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-5UTR	ENST00000446923	ENST00000375311		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-intron	ENST00000446923	ENST00000444692		ChiTaRS3.1			DA592038	ZEB1	chr10	31608222	+	ZNF438	chr10	31165995	-
intron-intron	ENST00000392514	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000551150	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000552292	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000313104	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000546989	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000228306	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
intron-intron	ENST00000550296	ENST00000295887		ChiTaRS3.1			BE698288	RPLP0	chr12	120636993	-	CDS1	chr4	85522777	+
3UTR-intron	ENST00000329627	ENST00000371497		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
3UTR-intron	ENST00000329627	ENST00000603338		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
3UTR-intron	ENST00000329627	ENST00000329613		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000399744	ENST00000371497		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000399744	ENST00000603338		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000399744	ENST00000329613		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000428061	ENST00000371497		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000428061	ENST00000603338		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-intron	ENST00000428061	ENST00000329613		ChiTaRS3.1			BF155568	PEX26	chr22	18572142	-	TSHZ2	chr20	51762495	-
intron-3UTR	ENST00000300737	ENST00000370132		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-intron	ENST00000300737	ENST00000370131		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-3UTR	ENST00000527651	ENST00000370132		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-intron	ENST00000527651	ENST00000370131		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-3UTR	ENST00000527484	ENST00000370132		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-intron	ENST00000527484	ENST00000370131		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-3UTR	ENST00000533977	ENST00000370132		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
intron-intron	ENST00000533977	ENST00000370131		ChiTaRS3.1			AI432188	STIM1	chr11	3925235	+	DBT	chr1	100660264	+
5CDS-intron	ENST00000421177	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000421177	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000513555	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000513555	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
intron-intron	ENST00000450293	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
intron-intron	ENST00000450293	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000505246	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000505246	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000506380	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000506380	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000397958	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000397958	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000433139	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000433139	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000504171	ENST00000329957		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
5CDS-intron	ENST00000504171	ENST00000526462		ChiTaRS3.1			AI686628	NSG1	chr4	4419108	-	MOB2	chr11	1774705	+
intron-intron	ENST00000289228	ENST00000434981		ChiTaRS3.1			BE939238	ACTR1B	chr2	98279592	+	FAM53C	chr5	137679772	-
intron-intron	ENST00000289228	ENST00000507506		ChiTaRS3.1			BE939238	ACTR1B	chr2	98279592	+	FAM53C	chr5	137679772	-
intron-intron	ENST00000289228	ENST00000239906		ChiTaRS3.1			BE939238	ACTR1B	chr2	98279592	+	FAM53C	chr5	137679772	-
intron-intron	ENST00000289228	ENST00000513056		ChiTaRS3.1			BE939238	ACTR1B	chr2	98279592	+	FAM53C	chr5	137679772	-
intron-3UTR	ENST00000366911	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366911	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000320285	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000320285	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000457520	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000457520	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366908	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366908	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366906	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366906	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366905	ENST00000366911		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366905	ENST00000320285		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000457520		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366908		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366906		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366905		ChiTaRS3.1			BU071898	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000371839	ENST00000538630		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371839	ENST00000376601		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371839	ENST00000376603		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-3UTR	ENST00000371839	ENST00000376624		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371839	ENST00000313311		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371839	ENST00000490361		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371838	ENST00000538630		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371838	ENST00000376601		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371838	ENST00000376603		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-3UTR	ENST00000371838	ENST00000376624		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371838	ENST00000313311		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371838	ENST00000490361		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371836	ENST00000538630		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371836	ENST00000376601		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371836	ENST00000376603		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-3UTR	ENST00000371836	ENST00000376624		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371836	ENST00000313311		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000371836	ENST00000490361		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000334103	ENST00000538630		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000334103	ENST00000376601		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000334103	ENST00000376603		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-3UTR	ENST00000334103	ENST00000376624		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000334103	ENST00000313311		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000334103	ENST00000490361		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000497451	ENST00000538630		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000497451	ENST00000376601		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000497451	ENST00000376603		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-3UTR	ENST00000497451	ENST00000376624		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000497451	ENST00000313311		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000497451	ENST00000490361		ChiTaRS3.1			BM979038	AGBL4	chr1	50321701	-	SPAG6	chr10	22706533	-
intron-intron	ENST00000367941	ENST00000367941		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000367941	ENST00000367937		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000367941	ENST00000448348		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000367937	ENST00000367941		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000367937	ENST00000367937		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000367937	ENST00000448348		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000448348	ENST00000367941		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000448348	ENST00000367937		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-intron	ENST00000448348	ENST00000448348		ChiTaRS3.1			AA503158	STX7	chr6	132783789	-	STX7	chr6	132783846	+
intron-3UTR	ENST00000373237	ENST00000373237		ChiTaRS3.1			AA393918	PSMB2	chr1	36107120	+	PSMB2	chr1	36068559	+
5CDS-intron	ENST00000387069	ENST00000296444		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
5CDS-intron	ENST00000387069	ENST00000444115		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
5CDS-5UTR	ENST00000387069	ENST00000426002		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
5CDS-intron	ENST00000387069	ENST00000465449		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
5CDS-intron	ENST00000387069	ENST00000442747		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
5CDS-intron	ENST00000387069	ENST00000443308		ChiTaRS3.1			DA256228	RNU11	chr1	28975250	+	SHISA5	chr3	48514528	-
intron-intron	ENST00000427245	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000427245	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000525682	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000236342	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000526219	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000374185	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000360009	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000376566		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000376563		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000376548		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000447146		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000473764		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000247140		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000218224		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-intron	ENST00000531955	ENST00000396763		ChiTaRS3.1			CV373808	DHDDS	chr1	26794332	-	PQBP1	chrX	48758706	-
intron-3CDS	ENST00000332050	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000332050	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000397938	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000397938	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000406548	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000406548	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000331029	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000331029	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000414183	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000414183	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000333395	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000333395	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000332035	ENST00000262053		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-intron	ENST00000332035	ENST00000539132		ChiTaRS3.1			JN202449	EWSR1	chr22	29687856	+	ATF1	chr12	51203238	+
intron-3UTR	ENST00000413366	ENST00000261267		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
intron-intron	ENST00000413366	ENST00000549690		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
intron-intron	ENST00000413366	ENST00000548839		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
intron-3UTR	ENST00000583361	ENST00000261267		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
intron-intron	ENST00000583361	ENST00000549690		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
intron-intron	ENST00000583361	ENST00000548839		ChiTaRS3.1			AK098118	PRKCA	chr17	64684673	+	LYZ	chr12	69747383	+
3UTR-3UTR	ENST00000401088	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401088	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000401088	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401088	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000401088	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401088	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000471507	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000471507	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000471507	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000471507	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000471507	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000471507	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000401089	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401089	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000401089	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401089	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000401089	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000401089	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000375590	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000375590	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000375590	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000375590	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000375590	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000375590	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000492354	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000492354	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000492354	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000492354	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-3UTR	ENST00000492354	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
3UTR-intron	ENST00000492354	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000472461	ENST00000401088		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000472461	ENST00000471507		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000472461	ENST00000401089		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000472461	ENST00000375590		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3UTR	ENST00000472461	ENST00000492354		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-intron	ENST00000472461	ENST00000472461		ChiTaRS3.1			BE827488	SZRD1	chr1	16723691	+	SZRD1	chr1	16723788	-
intron-3CDS	ENST00000464451	ENST00000464451		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000464451	ENST00000243253		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000464451	ENST00000424880		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3UTR	ENST00000464451	ENST00000483956		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000243253	ENST00000464451		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000243253	ENST00000243253		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000243253	ENST00000424880		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3UTR	ENST00000243253	ENST00000483956		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000424880	ENST00000464451		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000424880	ENST00000243253		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000424880	ENST00000424880		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3UTR	ENST00000424880	ENST00000483956		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000483956	ENST00000464451		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000483956	ENST00000243253		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3CDS	ENST00000483956	ENST00000424880		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3UTR	ENST00000483956	ENST00000483956		ChiTaRS3.1			AA405428	SEC61A1	chr3	127787546	-	SEC61A1	chr3	127788468	-
intron-3UTR	ENST00000355035	ENST00000355035		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000355035	ENST00000380952		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000355035	ENST00000254850		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-intron	ENST00000355035	ENST00000446679		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000380952	ENST00000355035		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000380952	ENST00000380952		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000380952	ENST00000254850		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-intron	ENST00000380952	ENST00000446679		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000254850	ENST00000355035		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000254850	ENST00000380952		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000254850	ENST00000254850		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-intron	ENST00000254850	ENST00000446679		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000446679	ENST00000355035		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000446679	ENST00000380952		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-3UTR	ENST00000446679	ENST00000254850		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
intron-intron	ENST00000446679	ENST00000446679		ChiTaRS3.1			CB162748	ASGR2	chr17	7012176	+	ASGR2	chr17	7004782	-
3UTR-3UTR	ENST00000371743	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000371743	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000371743	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000371743	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000371743	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000371743	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000371743	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000450535	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000450535	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000450535	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000450535	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000450535	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000450535	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000450535	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000441722	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000441722	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000441722	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000441722	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000441722	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000441722	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000441722	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000417721	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000417721	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000417721	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000417721	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000417721	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000417721	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000417721	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000458653	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000458653	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000458653	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000458653	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000458653	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000458653	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000458653	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000326677	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000326677	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000326677	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000326677	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000326677	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-intron	ENST00000326677	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3UTR	ENST00000326677	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000428008	ENST00000371743		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000428008	ENST00000450535		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000428008	ENST00000441722		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000428008	ENST00000417721		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000428008	ENST00000458653		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-intron	ENST00000428008	ENST00000326677		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
3UTR-3UTR	ENST00000428008	ENST00000428008		ChiTaRS3.1			AJ712898	ZFAS1	chr20	47897446	-	ZFAS1	chr20	47897474	+
intron-3CDS	ENST00000378300	ENST00000547405		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000452455		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000360610		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000441232		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000392934		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000547509		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378300	ENST00000361685		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000550501		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000549145		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000553190		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000536007		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000541119		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000545503		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378300	ENST00000361466		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000378300	ENST00000551300		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000378300	ENST00000550270		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000547405		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000452455		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000360610		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000441232		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000392934		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000547509		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000378292	ENST00000361685		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000550501		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000549145		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000553190		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000536007		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000541119		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000545503		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000378292	ENST00000361466		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000378292	ENST00000551300		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000378292	ENST00000550270		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000547405		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000452455		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000360610		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000441232		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000392934		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000547509		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000329305	ENST00000361685		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000550501		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000549145		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000553190		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000536007		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000541119		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000545503		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000329305	ENST00000361466		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000329305	ENST00000551300		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000329305	ENST00000550270		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000547405		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000452455		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000360610		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000441232		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000392934		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000547509		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-3CDS	ENST00000360958	ENST00000361685		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000550501		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000549145		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000553190		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000536007		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000541119		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000545503		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000360958	ENST00000361466		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000360958	ENST00000551300		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-5UTR	ENST00000360958	ENST00000550270		ChiTaRS3.1			AA195988	TPM2	chr9	35683079	+	MYBPC1	chr12	102023309	-
intron-intron	ENST00000462448	ENST00000462448		ChiTaRS3.1			BM968928	STK17A	chr7	43664480	-	STK17A	chr7	43663465	+
intron-intron	ENST00000462448	ENST00000319357		ChiTaRS3.1			BM968928	STK17A	chr7	43664480	-	STK17A	chr7	43663465	+
3UTR-intron	ENST00000319357	ENST00000462448		ChiTaRS3.1			BM968928	STK17A	chr7	43664480	-	STK17A	chr7	43663465	+
3UTR-intron	ENST00000319357	ENST00000319357		ChiTaRS3.1			BM968928	STK17A	chr7	43664480	-	STK17A	chr7	43663465	+
intron-intron	ENST00000536476	ENST00000254963		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000536476	ENST00000542646		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000394809	ENST00000254963		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000394809	ENST00000542646		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000562104	ENST00000254963		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000562104	ENST00000542646		ChiTaRS3.1			R47378	MYLK3	chr16	46740994	+	HSPA12B	chr20	3722477	-
intron-intron	ENST00000396402	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000396402	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000396402	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000260433	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000260433	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000260433	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000396404	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000396404	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000396404	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000559878	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000559878	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000559878	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000405913	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000405913	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000405913	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000557858	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000557858	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000557858	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000492852	ENST00000313077		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000492852	ENST00000560848		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-intron	ENST00000492852	ENST00000435939		ChiTaRS3.1			BF988608	CYP19A1	chr15	51514415	+	CYFIP1	chr15	22976553	+
intron-3CDS	ENST00000392237	ENST00000372583		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000392237	ENST00000372584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000392237	ENST00000247584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000392237	ENST00000429157		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-intron	ENST00000392237	ENST00000460604		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000358299	ENST00000372583		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000358299	ENST00000372584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000358299	ENST00000247584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000358299	ENST00000429157		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-intron	ENST00000358299	ENST00000460604		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000425178	ENST00000372583		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000425178	ENST00000372584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000425178	ENST00000247584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000425178	ENST00000429157		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-intron	ENST00000425178	ENST00000460604		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000418208	ENST00000372583		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000418208	ENST00000372584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000418208	ENST00000247584		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-3CDS	ENST00000418208	ENST00000429157		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-intron	ENST00000418208	ENST00000460604		ChiTaRS3.1			BM152878	ICA1L	chr2	203727111	-	HIVEP3	chr1	42047952	-
intron-intron	ENST00000344749	ENST00000291576		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000344749	ENST00000494310		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000262965	ENST00000291576		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000262965	ENST00000494310		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000453954	ENST00000291576		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000453954	ENST00000494310		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000395423	ENST00000291576		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000395423	ENST00000494310		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000588136	ENST00000291576		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
intron-intron	ENST00000588136	ENST00000494310		ChiTaRS3.1			BG953208	TCF3	chr19	1619204	+	PWP2	chr21	45541997	+
3UTR-3CDS	ENST00000534336	ENST00000309007		ChiTaRS3.1			CB148218	MALAT1	chr11	65271254	+	DBN1	chr5	176894041	-
3UTR-3CDS	ENST00000534336	ENST00000292385		ChiTaRS3.1			CB148218	MALAT1	chr11	65271254	+	DBN1	chr5	176894041	-
3UTR-3CDS	ENST00000534336	ENST00000393565		ChiTaRS3.1			CB148218	MALAT1	chr11	65271254	+	DBN1	chr5	176894041	-
3UTR-intron	ENST00000534336	ENST00000393563		ChiTaRS3.1			CB148218	MALAT1	chr11	65271254	+	DBN1	chr5	176894041	-
3UTR-intron	ENST00000534336	ENST00000512501		ChiTaRS3.1			CB148218	MALAT1	chr11	65271254	+	DBN1	chr5	176894041	-
intron-intron	ENST00000431281	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000431281	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000431281	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000431281	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000431281	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000431281	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591859	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000586346	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000398322	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000592162	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376955	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000321854	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000274456		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000513374		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000504771		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000503646		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000504642		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000591136	ENST00000415806		ChiTaRS3.1			AA370188	ACBD4	chr17	43216359	+	TNFAIP8	chr5	118728328	+
intron-intron	ENST00000376621	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000376621	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383450	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000441604	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550904	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000428189	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551708	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000437917	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000548423	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000383596	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000550942	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000454829	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000552589	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000417834	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000376621		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000383450		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000441604		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000550904		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000428189		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000551708		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000437917		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000548423		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000383596		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000550942		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000454829		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000552589		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000417834		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
intron-intron	ENST00000551903	ENST00000551903		ChiTaRS3.1			BF852168	GNL1	chr6	1852565	+	GNL1	chr6	1853566	-
In-frame	ENST00000309364	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000309364	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000309364	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000309364	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000309364	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000309364	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000359180	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000359180	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000359180	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000359180	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000359180	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000359180	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000317589	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000317589	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000317589	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000317589	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000317589	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000317589	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000355397	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000355397	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000355397	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000355397	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000355397	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000355397	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000429027	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000429027	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000429027	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000429027	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000429027	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000429027	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-3CDS	ENST00000539256	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-intron	ENST00000539256	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-intron	ENST00000539256	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-intron	ENST00000539256	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-intron	ENST00000539256	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5UTR-intron	ENST00000539256	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000299275	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000299275	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000299275	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000299275	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000299275	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000299275	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000538714	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000538714	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000538714	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000538714	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000538714	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000538714	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000543806	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000543806	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000543806	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000543806	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000543806	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000543806	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
In-frame	ENST00000424268	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000424268	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000424268	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000424268	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000424268	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
5CDS-intron	ENST00000424268	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-3CDS	ENST00000540972	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000540972	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000540972	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000540972	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000540972	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000540972	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-3CDS	ENST00000510738	ENST00000341846		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000510738	ENST00000524816		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000510738	ENST00000541857		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000510738	ENST00000525887		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000510738	ENST00000528870		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000510738	ENST00000529044		ChiTaRS3.1			BG993058	PLEKHA5	chr12	19408008	-	TRIM29	chr11	119999118	+
intron-intron	ENST00000504595	ENST00000520381		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000504595	ENST00000262215		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000504595	ENST00000517955		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000504595	ENST00000518230		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000510662	ENST00000520381		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000510662	ENST00000262215		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000510662	ENST00000517955		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000510662	ENST00000518230		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000329673	ENST00000520381		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000329673	ENST00000262215		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000329673	ENST00000517955		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
intron-intron	ENST00000329673	ENST00000518230		ChiTaRS3.1			BI041488	FBXL7	chr5	15771138	-	ARFGEF1	chr8	68118382	-
5CDS-intron	ENST00000332050	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332050	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000397938	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000406548	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000331029	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000414183	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000333395	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000425759		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000292733		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000542773		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000263205		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000406969		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000382974		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000541476		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
5CDS-intron	ENST00000332035	ENST00000478831		ChiTaRS3.1			BG003288	EWSR1	chr22	29695746	+	MED15	chr22	20928982	+
intron-intron	ENST00000513454	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000513454	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000513454	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000311337	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000311337	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000311337	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000458112	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000458112	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000458112	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000500692	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000500692	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000500692	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000508177	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000508177	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000508177	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000503794	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000503794	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000503794	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000542860	ENST00000513454		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000311337		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000458112		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000500692		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000508177		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3UTR	ENST00000542860	ENST00000503794		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-intron	ENST00000542860	ENST00000542860		ChiTaRS3.1			W00428	GNPDA1	chr5	141380640	+	GNPDA1	chr5	141380539	-
intron-3CDS	ENST00000464611	ENST00000334528		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000464611	ENST00000561249		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000464611	ENST00000559047		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000464611	ENST00000558197		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-5UTR	ENST00000464611	ENST00000559150		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000464611	ENST00000320930		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-3CDS	ENST00000331789	ENST00000334528		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000331789	ENST00000561249		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000331789	ENST00000559047		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000331789	ENST00000558197		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-5UTR	ENST00000331789	ENST00000559150		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000331789	ENST00000320930		ChiTaRS3.1			BQ320988	ACTB	chr7	5568201	-	FMN1	chr15	33357202	-
intron-intron	ENST00000366641	ENST00000374875		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000265371		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000374867		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000395995		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000374821		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000374822		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000374823		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000374816		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000366641	ENST00000432372		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374875		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000265371		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374867		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000395995		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374821		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374822		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374823		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000374816		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
intron-intron	ENST00000476717	ENST00000432372		ChiTaRS3.1			BU150658	EGLN1	chr1	231525140	-	NRP1	chr10	33477667	-
Frame-shit	ENST00000413916	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000413916	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000261700		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000556760		ChiTaRS3.1			BI059838	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000216268	ENST00000216268		ChiTaRS3.1			BF155788	ZBED4	chr22	50277886	-	ZBED4	chr22	50278319	+
Frame-shit	ENST00000288398	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000288398	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000288398	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000358278	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000358278	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000358278	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-3CDS	ENST00000560445	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-3CDS	ENST00000560445	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-intron	ENST00000560445	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000403994	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000403994	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000403994	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000357980	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000357980	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000357980	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559556	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559556	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559556	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559397	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559397	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559397	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000267996	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000267996	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000267996	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000334895	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000334895	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000334895	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000404484	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000404484	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000404484	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000560959	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000560959	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000560959	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559281	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000559281	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000559281	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000317516	ENST00000288398		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
Frame-shit	ENST00000317516	ENST00000358278		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000560445		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000403994		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000357980		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000559556		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000559397		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000267996		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000334895		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000404484		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000560959		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000559281		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
5CDS-intron	ENST00000317516	ENST00000317516		ChiTaRS3.1			BE005428	TPM1	chr15	63354448	-	TPM1	chr15	63353433	+
intron-3UTR	ENST00000379066	ENST00000379066		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-3UTR	ENST00000379066	ENST00000234179		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-intron	ENST00000379066	ENST00000477132		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-3UTR	ENST00000234179	ENST00000379066		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-3UTR	ENST00000234179	ENST00000234179		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-intron	ENST00000234179	ENST00000477132		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-3UTR	ENST00000477132	ENST00000379066		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-3UTR	ENST00000477132	ENST00000234179		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
intron-intron	ENST00000477132	ENST00000477132		ChiTaRS3.1			CN354928	PRKD3	chr2	37479407	+	PRKD3	chr2	37479305	-
3UTR-3CDS	ENST00000334982	ENST00000334982		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3UTR	ENST00000334982	ENST00000484480		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000334982	ENST00000310450		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000334982	ENST00000398602		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3CDS	ENST00000484480	ENST00000334982		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3UTR	ENST00000484480	ENST00000484480		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000484480	ENST00000310450		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000484480	ENST00000398602		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3CDS	ENST00000310450	ENST00000334982		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3UTR	ENST00000310450	ENST00000484480		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000310450	ENST00000310450		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000310450	ENST00000398602		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3CDS	ENST00000398602	ENST00000334982		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-3UTR	ENST00000398602	ENST00000484480		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000398602	ENST00000310450		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
3UTR-intron	ENST00000398602	ENST00000398602		ChiTaRS3.1			BG284638	NAA20	chr20	20013854	-	NAA20	chr20	20013183	+
intron-intron	ENST00000359271	ENST00000333055		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000359271	ENST00000307826		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000359271	ENST00000446023		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000359271	ENST00000393340		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000359271	ENST00000427865		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000359271	ENST00000506708		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000333055		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000307826		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000446023		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000393340		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000427865		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-intron	ENST00000486000	ENST00000506708		ChiTaRS3.1			AW818318	SLC2A10	chr20	45361542	-	MGAT1	chr5	180224026	+
intron-3CDS	ENST00000301764	ENST00000268097		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000301764	ENST00000566304		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000301764	ENST00000457859		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000301764	ENST00000567159		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000301764	ENST00000429918		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-intron	ENST00000301764	ENST00000567213		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000450997	ENST00000268097		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000450997	ENST00000566304		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000450997	ENST00000457859		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000450997	ENST00000567159		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000450997	ENST00000429918		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-intron	ENST00000450997	ENST00000567213		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000451943	ENST00000268097		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000451943	ENST00000566304		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000451943	ENST00000457859		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000451943	ENST00000567159		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000451943	ENST00000429918		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-intron	ENST00000451943	ENST00000567213		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000538470	ENST00000268097		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000538470	ENST00000566304		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000538470	ENST00000457859		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000538470	ENST00000567159		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000538470	ENST00000429918		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-intron	ENST00000538470	ENST00000567213		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000545930	ENST00000268097		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3CDS	ENST00000545930	ENST00000566304		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000545930	ENST00000457859		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000545930	ENST00000567159		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-3UTR	ENST00000545930	ENST00000429918		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
intron-intron	ENST00000545930	ENST00000567213		ChiTaRS3.1			T29398	DDB1	chr11	61070101	+	HEXA	chr15	72638618	-
3UTR-3UTR	ENST00000266517	ENST00000266517		ChiTaRS3.1			BQ637998	ETNK1	chr12	22843240	-	ETNK1	chr12	22842331	+
3UTR-intron	ENST00000266517	ENST00000335148		ChiTaRS3.1			BQ637998	ETNK1	chr12	22843240	-	ETNK1	chr12	22842331	+
intron-3UTR	ENST00000335148	ENST00000266517		ChiTaRS3.1			BQ637998	ETNK1	chr12	22843240	-	ETNK1	chr12	22842331	+
intron-intron	ENST00000335148	ENST00000335148		ChiTaRS3.1			BQ637998	ETNK1	chr12	22843240	-	ETNK1	chr12	22842331	+
intron-3CDS	ENST00000538159	ENST00000559471		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-3CDS	ENST00000538159	ENST00000261847		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-intron	ENST00000538159	ENST00000559122		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-3CDS	ENST00000514213	ENST00000559471		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-3CDS	ENST00000514213	ENST00000261847		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-intron	ENST00000514213	ENST00000559122		ChiTaRS3.1			H20018	USO1	chr4	76735304	-	SECISBP2L	chr15	49308802	+
intron-intron	ENST00000262570	ENST00000262570		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000262570	ENST00000448878		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000262570	ENST00000476546		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000262570	ENST00000542753		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000448878	ENST00000262570		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000448878	ENST00000448878		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000448878	ENST00000476546		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000448878	ENST00000542753		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000476546	ENST00000262570		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000476546	ENST00000448878		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000476546	ENST00000476546		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000476546	ENST00000542753		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000542753	ENST00000262570		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000542753	ENST00000448878		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000542753	ENST00000476546		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000542753	ENST00000542753		ChiTaRS3.1			W28818	CHCHD3	chr7	132720694	+	CHCHD3	chr7	132720530	-
intron-intron	ENST00000271069	ENST00000272427		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000271069	ENST00000490919		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000271069	ENST00000410104		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373672	ENST00000272427		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373672	ENST00000490919		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373672	ENST00000410104		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000461217	ENST00000272427		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000461217	ENST00000490919		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000461217	ENST00000410104		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373668	ENST00000272427		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373668	ENST00000490919		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000373668	ENST00000410104		ChiTaRS3.1			AW444528	COL16A1	chr1	32148821	+	EXOC6B	chr2	72617870	+
intron-intron	ENST00000449054	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000449054	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379238	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000360802	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379239	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000539807	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000418786	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379225	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000379235	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000484457		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000538892		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000283627		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000538181		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000446237		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000507198		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000480885	ENST00000542085		ChiTaRS3.1			BI009388	UBAP2	chr9	33923950	+	FBXL2	chr3	33397409	+
intron-intron	ENST00000275262	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000275262	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000275262	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000275262	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000275262	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000275262	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000392127	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000453779	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361752	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000361195	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000275262		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000392127		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000453779		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000361752		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000361195		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000424802	ENST00000424802		ChiTaRS3.1			DW433368	QKI	chr6	163870852	+	QKI	chr6	163869132	+
intron-intron	ENST00000264018	ENST00000534526		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000531134		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000427716		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000266482		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000546442		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000525053		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000381025		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000472289		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000264018	ENST00000473513		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000534526		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000531134		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000427716		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000266482		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000546442		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000525053		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000381025		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000472289		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000534980	ENST00000473513		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000534526		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000531134		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000427716		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000266482		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000546442		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000525053		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000381025		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000472289		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000526070	ENST00000473513		ChiTaRS3.1			BF356738	DDX6	chr11	118647931	+	FGD4	chr12	32699765	-
intron-intron	ENST00000579761	ENST00000579761		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
intron-3UTR	ENST00000579761	ENST00000245539		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
intron-3UTR	ENST00000579761	ENST00000579002		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-intron	ENST00000245539	ENST00000579761		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-3UTR	ENST00000245539	ENST00000245539		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-3UTR	ENST00000245539	ENST00000579002		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-intron	ENST00000579002	ENST00000579761		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-3UTR	ENST00000579002	ENST00000245539		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
3UTR-3UTR	ENST00000579002	ENST00000579002		ChiTaRS3.1			BU676688	MRPS7	chr17	73262210	-	MRPS7	chr17	73262027	+
intron-intron	ENST00000217043	ENST00000400324		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400330		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400319		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000400320		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000377908		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000267215		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000217043	ENST00000465066		ChiTaRS3.1			BF335408	R3HDML	chr20	42973705	-	DIAPH3	chr13	60411976	-
intron-intron	ENST00000446176	ENST00000446176		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000420781		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000355681		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000443566		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000446176	ENST00000478129		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000446176		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000420781		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000355681		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000443566		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000420781	ENST00000478129		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000446176		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000420781		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000355681		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000443566		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000355681	ENST00000478129		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000446176		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000420781		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000355681		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000443566		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000443566	ENST00000478129		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000446176		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000420781		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000355681		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000443566		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
intron-intron	ENST00000478129	ENST00000478129		ChiTaRS3.1			AA824528	FNBP1	chr9	132685592	+	FNBP1	chr9	132684016	+
In-frame	ENST00000321153	ENST00000040738		ChiTaRS3.1			DB355988	RPLP2	chr11	810294	-	BOD1L1	chr4	13601214	+
intron-3CDS	ENST00000532004	ENST00000040738		ChiTaRS3.1			DB355988	RPLP2	chr11	810294	-	BOD1L1	chr4	13601214	+
In-frame	ENST00000530797	ENST00000040738		ChiTaRS3.1			DB355988	RPLP2	chr11	810294	-	BOD1L1	chr4	13601214	+
intron-intron	ENST00000478241	ENST00000478241		ChiTaRS3.1			AY358778	TMEM198B	chr12	56226700	-	TMEM198B	chr12	56226827	+
intron-intron	ENST00000337959	ENST00000398015		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000337959	ENST00000488154		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000337959	ENST00000493838		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000263246	ENST00000398015		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000263246	ENST00000488154		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000263246	ENST00000493838		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000407585	ENST00000398015		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000407585	ENST00000488154		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000407585	ENST00000493838		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000403744	ENST00000398015		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000403744	ENST00000488154		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000403744	ENST00000493838		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000402229	ENST00000398015		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000402229	ENST00000488154		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-intron	ENST00000402229	ENST00000493838		ChiTaRS3.1			BE148118	PACSIN2	chr22	43382994	+	EPHB1	chr3	134957527	+
intron-3UTR	ENST00000374791	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000374791	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000539799	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000539799	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000427481	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000427481	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000374786	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000374786	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000425719	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000425719	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000374784	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000374784	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-3UTR	ENST00000474900	ENST00000369135		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000474900	ENST00000479905		ChiTaRS3.1			EB387238	NTM	chr11	131721427	+	OTUD7B	chr1	149914028	-
intron-intron	ENST00000375807	ENST00000375807		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000375807	ENST00000339901		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000375807	ENST00000534113		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-3UTR	ENST00000375807	ENST00000470305		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000339901	ENST00000375807		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000339901	ENST00000339901		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000339901	ENST00000534113		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-3UTR	ENST00000339901	ENST00000470305		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000534113	ENST00000375807		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000534113	ENST00000339901		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-intron	ENST00000534113	ENST00000534113		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-3UTR	ENST00000534113	ENST00000470305		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
3UTR-intron	ENST00000470305	ENST00000375807		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
3UTR-intron	ENST00000470305	ENST00000339901		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
3UTR-intron	ENST00000470305	ENST00000534113		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
3UTR-3UTR	ENST00000470305	ENST00000470305		ChiTaRS3.1			CV416238	SECISBP2	chr9	91939671	+	SECISBP2	chr9	91939346	-
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			BM716828	COL1A1	chr17	48262991	+	COL1A1	chr17	48261663	-
intron-3CDS	ENST00000545387	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000545387	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000545387	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000545387	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000402551	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000402551	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000402551	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000316273	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000316273	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000316273	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000597011	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000597011	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000597011	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000599246	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000599246	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000599246	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000598162	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000598162	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000598162	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000323961		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000528851		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000420732		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000530839		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000529054		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000426738		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000412309		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-3CDS	ENST00000601496	ENST00000533023		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000601496	ENST00000529906		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000601496	ENST00000532169		ChiTaRS3.1			BF934808	BCAT2	chr19	49310632	-	MS4A6A	chr11	59943041	-
intron-intron	ENST00000328656	ENST00000319555		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000328656	ENST00000569086		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398938	ENST00000319555		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398938	ENST00000569086		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398932	ENST00000319555		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398932	ENST00000569086		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398930	ENST00000319555		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398930	ENST00000569086		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398934	ENST00000319555		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-intron	ENST00000398934	ENST00000569086		ChiTaRS3.1			AJ311492	KCNJ15	chr21	39618910	-	ZFPM1	chr16	88587240	-
intron-3CDS	ENST00000547302	ENST00000367120		ChiTaRS3.1			AI539428	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
intron-3CDS	ENST00000547302	ENST00000537984		ChiTaRS3.1			AI539428	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
intron-intron	ENST00000547302	ENST00000463979		ChiTaRS3.1			AI539428	RNASEK-C17orf49	chr17	6917635	-	IKBKE	chr1	206649597	-
Frame-shit	ENST00000327726	ENST00000395808		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000327726	ENST00000589119		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000327726	ENST00000312090		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000327726	ENST00000269814		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000327726	ENST00000325464		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
5CDS-5UTR	ENST00000327726	ENST00000606828		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000592860	ENST00000395808		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000592860	ENST00000589119		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000592860	ENST00000312090		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000592860	ENST00000269814		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
Frame-shit	ENST00000592860	ENST00000325464		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
5CDS-5UTR	ENST00000592860	ENST00000606828		ChiTaRS3.1			BM825118	CFD	chr19	861956	+	MED16	chr19	873584	-
5UTR-3CDS	ENST00000423192	ENST00000320985		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-3CDS	ENST00000423192	ENST00000361642		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000423192	ENST00000559858		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000423192	ENST00000560721		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000423192	ENST00000542815		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000423192	ENST00000446923		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-3CDS	ENST00000367682	ENST00000320985		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-3CDS	ENST00000367682	ENST00000361642		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000367682	ENST00000559858		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000367682	ENST00000560721		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000367682	ENST00000542815		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
5UTR-intron	ENST00000367682	ENST00000446923		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-3CDS	ENST00000541398	ENST00000320985		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-3CDS	ENST00000541398	ENST00000361642		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000541398	ENST00000559858		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000541398	ENST00000560721		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000541398	ENST00000542815		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000541398	ENST00000446923		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-3CDS	ENST00000495970	ENST00000320985		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-3CDS	ENST00000495970	ENST00000361642		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000495970	ENST00000559858		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000495970	ENST00000560721		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000495970	ENST00000542815		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000495970	ENST00000446923		ChiTaRS3.1			CK004958	ECT2L	chr6	139134364	+	ZEB1	chr10	31816026	+
intron-intron	ENST00000437600	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000437600	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292538	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000393824	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000547394	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000360264	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000425244	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000292535	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000549414	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000556210	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000550008	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000546411	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000437600		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000292538		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000393824		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000547394		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000360264		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000425244		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000292535		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000549414		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000556210		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000550008		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000546411		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000560541	ENST00000560541		ChiTaRS3.1			BE143748	CUX1	chr7	101652851	-	CUX1	chr7	101573276	+
intron-intron	ENST00000368868	ENST00000310441		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000369984		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000354233		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000368868	ENST00000461098		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000310441		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000369984		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000354233		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000447402	ENST00000461098		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000310441		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000369984		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000354233		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000426705	ENST00000461098		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000310441		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000369984		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000354233		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000435071	ENST00000461098		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000310441		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000369984		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000354233		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
intron-intron	ENST00000473693	ENST00000461098		ChiTaRS3.1			BE646188	SELENBP1	chr1	151336954	+	HCFC1	chrX	153221112	+
5UTR-3CDS	ENST00000381070	ENST00000381070		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
5UTR-3CDS	ENST00000381070	ENST00000508024		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
5UTR-intron	ENST00000381070	ENST00000545000		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
5UTR-3CDS	ENST00000508024	ENST00000381070		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
5UTR-3CDS	ENST00000508024	ENST00000508024		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
5UTR-intron	ENST00000508024	ENST00000545000		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
intron-3CDS	ENST00000545000	ENST00000381070		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
intron-3CDS	ENST00000545000	ENST00000508024		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
intron-intron	ENST00000545000	ENST00000545000		ChiTaRS3.1			BG170618	CWC27	chr5	64064933	-	CWC27	chr5	64064973	+
intron-intron	ENST00000379441	ENST00000225235		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000379441	ENST00000485048		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000179765	ENST00000225235		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000179765	ENST00000485048		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000551812	ENST00000225235		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000551812	ENST00000485048		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000549884	ENST00000225235		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000549884	ENST00000485048		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000553222	ENST00000225235		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000553222	ENST00000485048		ChiTaRS3.1			BF376008	BAZ2A	chr12	57008762	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000223127	ENST00000233545		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-intron	ENST00000223127	ENST00000402310		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-5UTR	ENST00000223127	ENST00000380044		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-intron	ENST00000223127	ENST00000357186		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-intron	ENST00000223127	ENST00000402722		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-intron	ENST00000223127	ENST00000405983		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-5UTR	ENST00000223127	ENST00000405076		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-intron	ENST00000223127	ENST00000403262		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
intron-5UTR	ENST00000223127	ENST00000399052		ChiTaRS3.1			CB115918	PLOD3	chr7	100849367	+	MPV17	chr2	27545943	-
3UTR-3CDS	ENST00000332556	ENST00000560403		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000419198		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000216799		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-5UTR	ENST00000332556	ENST00000558200		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000560403		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000419198		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000216799		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000397181	ENST00000558200		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000560403		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000419198		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000216799		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000471046	ENST00000558200		ChiTaRS3.1			AW003028	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-intron	ENST00000264211	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000264211	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000400422	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000602326	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374935	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374937	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000536266	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374933	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000544689	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000356916	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000374927	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000414350		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000343632		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000381756		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000405147		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000325180		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000337437		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000406772		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537738	ENST00000488672		ChiTaRS3.1			BQ320238	EIF4G3	chr1	21268229	+	GGA1	chr22	38021101	+
intron-intron	ENST00000537971	ENST00000267485		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000537971	ENST00000334342		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000011898	ENST00000267485		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000011898	ENST00000334342		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000407263	ENST00000267485		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000407263	ENST00000334342		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000492305	ENST00000267485		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-intron	ENST00000492305	ENST00000334342		ChiTaRS3.1			AK022248	TSPAN9	chr12	3332816	+	C14orf37	chr14	58674668	+
intron-3UTR	ENST00000361205	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000361205	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000361205	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000361205	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000399848	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000399848	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000399848	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000399848	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000359446	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000359446	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000359446	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000359446	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000587757	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000587757	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000587757	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000587757	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000585931	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000585931	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000585931	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000585931	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000586765	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000586765	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000586765	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000586765	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000590308	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000590308	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000590308	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000590308	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000592991	ENST00000396472		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000592991	ENST00000382406		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-3UTR	ENST00000592991	ENST00000280987		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000592991	ENST00000554052		ChiTaRS3.1			BC040538	LDLRAD4	chr18	13329979	+	FAM177A1	chr14	35551705	+
intron-intron	ENST00000540797	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000540797	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000380324	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000268049	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000536001	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000539772	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558285	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000559711	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000540797		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000380324		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000268049		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000536001		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000539772		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000558285		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000559711		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
intron-intron	ENST00000558218	ENST00000558218		ChiTaRS3.1			AK024198	USP3	chr15	63838251	+	USP3	chr15	63835698	+
In-frame	ENST00000268171	ENST00000268171		ChiTaRS3.1			BG004888	FURIN	chr15	91419768	-	FURIN	chr15	91419119	+
intron-intron	ENST00000388712	ENST00000545294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000388712	ENST00000538489		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000388712	ENST00000489294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-intron	ENST00000388712	ENST00000282169		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-intron	ENST00000388711	ENST00000545294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000388711	ENST00000538489		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000388711	ENST00000489294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-intron	ENST00000388711	ENST00000282169		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-intron	ENST00000257504	ENST00000545294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000257504	ENST00000538489		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-3UTR	ENST00000257504	ENST00000489294		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
intron-intron	ENST00000257504	ENST00000282169		ChiTaRS3.1			BX647888	GOLM1	chr9	88826165	-	UHMK1	chr1	162499287	+
5CDS-intron	ENST00000366574	ENST00000317702		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000366574	ENST00000591909		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-3UTR	ENST00000366574	ENST00000586653		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000366574	ENST00000592683		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000366574	ENST00000590967		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000366574	ENST00000591208		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000360064	ENST00000317702		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000360064	ENST00000591909		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-3UTR	ENST00000360064	ENST00000586653		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000360064	ENST00000592683		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000360064	ENST00000590967		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000360064	ENST00000591208		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000542537	ENST00000317702		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000542537	ENST00000591909		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-3UTR	ENST00000542537	ENST00000586653		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000542537	ENST00000592683		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000542537	ENST00000590967		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
5CDS-intron	ENST00000542537	ENST00000591208		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000609119	ENST00000317702		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000609119	ENST00000591909		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-3UTR	ENST00000609119	ENST00000586653		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000609119	ENST00000592683		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000609119	ENST00000590967		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000609119	ENST00000591208		ChiTaRS3.1			AA416878	RYR2	chr1	237787116	+	TUBB6	chr18	12324898	+
intron-intron	ENST00000333371	ENST00000333371		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000333371	ENST00000535843		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000333371	ENST00000535906		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000333371	ENST00000557358		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535843	ENST00000333371		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535843	ENST00000535843		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535843	ENST00000535906		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535843	ENST00000557358		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535906	ENST00000333371		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535906	ENST00000535843		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535906	ENST00000535906		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000535906	ENST00000557358		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000557358	ENST00000333371		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000557358	ENST00000535843		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000557358	ENST00000535906		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
intron-intron	ENST00000557358	ENST00000557358		ChiTaRS3.1			BQ883678	VPS33B	chr15	91559035	-	VPS33B	chr15	91562101	-
3UTR-intron	ENST00000369799	ENST00000265734		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
3UTR-intron	ENST00000369799	ENST00000424848		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
3UTR-intron	ENST00000369799	ENST00000491250		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000475081	ENST00000265734		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000475081	ENST00000424848		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000475081	ENST00000491250		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
3UTR-intron	ENST00000359172	ENST00000265734		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
3UTR-intron	ENST00000359172	ENST00000424848		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
3UTR-intron	ENST00000359172	ENST00000491250		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000393614	ENST00000265734		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000393614	ENST00000424848		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-intron	ENST00000393614	ENST00000491250		ChiTaRS3.1			AI862468	AHCYL1	chr1	110564750	-	CDK6	chr7	92366341	+
intron-3UTR	ENST00000454872	ENST00000375078		ChiTaRS3.1			BE927948	NAALADL2	chr3	175284590	-	CAMK2N1	chr1	20809835	+
intron-5UTR	ENST00000454872	ENST00000489020		ChiTaRS3.1			BE927948	NAALADL2	chr3	175284590	-	CAMK2N1	chr1	20809835	+
intron-3UTR	ENST00000473253	ENST00000375078		ChiTaRS3.1			BE927948	NAALADL2	chr3	175284590	-	CAMK2N1	chr1	20809835	+
intron-5UTR	ENST00000473253	ENST00000489020		ChiTaRS3.1			BE927948	NAALADL2	chr3	175284590	-	CAMK2N1	chr1	20809835	+
3UTR-intron	ENST00000263733	ENST00000398970		ChiTaRS3.1			BE706868	FAM20B	chr1	179041524	+	CRK	chr17	1357030	-
3UTR-intron	ENST00000263733	ENST00000300574		ChiTaRS3.1			BE706868	FAM20B	chr1	179041524	+	CRK	chr17	1357030	-
3UTR-intron	ENST00000263733	ENST00000574295		ChiTaRS3.1			BE706868	FAM20B	chr1	179041524	+	CRK	chr17	1357030	-
3UTR-intron	ENST00000263733	ENST00000572145		ChiTaRS3.1			BE706868	FAM20B	chr1	179041524	+	CRK	chr17	1357030	-
intron-intron	ENST00000262995	ENST00000374741		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000262995	ENST00000573786		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262995	ENST00000571503		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262994	ENST00000374741		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000262994	ENST00000573786		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000262994	ENST00000571503		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000505913	ENST00000374741		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000505913	ENST00000573786		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000505913	ENST00000571503		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000515388	ENST00000374741		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-5UTR	ENST00000515388	ENST00000573786		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000515388	ENST00000571503		ChiTaRS3.1			AW794748	GAB1	chr4	144306047	-	OXLD1	chr17	79633043	+
intron-intron	ENST00000255409	ENST00000368378		ChiTaRS3.1			BF914338	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000541576		ChiTaRS3.1			BF914338	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000457183		ChiTaRS3.1			BF914338	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000541990		ChiTaRS3.1			BF914338	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000255409	ENST00000486260		ChiTaRS3.1			BF914338	CHI3L1	chr1	203152781	-	THBS3	chr1	155169591	+
intron-intron	ENST00000261534	ENST00000261534		ChiTaRS3.1			AA737198	POMT2	chr14	77741348	-	POMT2	chr14	77741302	+
intron-intron	ENST00000261534	ENST00000556880		ChiTaRS3.1			AA737198	POMT2	chr14	77741348	-	POMT2	chr14	77741302	+
intron-intron	ENST00000556880	ENST00000261534		ChiTaRS3.1			AA737198	POMT2	chr14	77741348	-	POMT2	chr14	77741302	+
intron-intron	ENST00000556880	ENST00000556880		ChiTaRS3.1			AA737198	POMT2	chr14	77741348	-	POMT2	chr14	77741302	+
5CDS-intron	ENST00000528896	ENST00000578229		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000580454		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000579760		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000339142		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000311661		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000354124		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000392445		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000581774		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000583904		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000580474		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000528896	ENST00000582625		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000578229		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000580454		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000579760		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000339142		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000311661		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000354124		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000392445		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000581774		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000583904		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000580474		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000544884	ENST00000582625		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000578229		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000580454		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000579760		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000339142		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000311661		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000354124		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000392445		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000581774		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000583904		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000580474		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5CDS-intron	ENST00000389003	ENST00000582625		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000578229		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000580454		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000579760		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000339142		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000311661		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000354124		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000392445		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000581774		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000583904		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000580474		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
5UTR-intron	ENST00000579924	ENST00000582625		ChiTaRS3.1			BG015748	KIAA0100	chr17	26946669	-	C1QTNF1	chr17	77025508	+
intron-3CDS	ENST00000361475	ENST00000361475		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000361475	ENST00000536701		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000361475	ENST00000536724		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536701	ENST00000361475		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536701	ENST00000536701		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536701	ENST00000536724		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536724	ENST00000361475		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536724	ENST00000536701		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000536724	ENST00000536724		ChiTaRS3.1			BF748178	TGM2	chr20	36775269	+	TGM2	chr20	36779416	-
intron-3CDS	ENST00000355295	ENST00000407149		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000355295	ENST00000379551		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000355295	ENST00000505123		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000355295	ENST00000446965		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000422139	ENST00000407149		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000422139	ENST00000379551		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000422139	ENST00000505123		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000422139	ENST00000446965		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000540902	ENST00000407149		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000540902	ENST00000379551		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000540902	ENST00000505123		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000540902	ENST00000446965		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000492428	ENST00000407149		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000492428	ENST00000379551		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000492428	ENST00000505123		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-3CDS	ENST00000492428	ENST00000446965		ChiTaRS3.1			BG117378	TDRD7	chr9	100255175	-	PRR16	chr5	120022337	+
intron-intron	ENST00000294256	ENST00000524482		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000294256	ENST00000534078		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000294256	ENST00000526171		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000294256	ENST00000279242		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000294256	ENST00000531705		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000377190	ENST00000524482		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000377190	ENST00000534078		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000377190	ENST00000526171		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000377190	ENST00000279242		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000377190	ENST00000531705		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000307289	ENST00000524482		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000307289	ENST00000534078		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000307289	ENST00000526171		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000307289	ENST00000279242		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000307289	ENST00000531705		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526060	ENST00000524482		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526060	ENST00000534078		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526060	ENST00000526171		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526060	ENST00000279242		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526060	ENST00000531705		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526121	ENST00000524482		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526121	ENST00000534078		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526121	ENST00000526171		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526121	ENST00000279242		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-intron	ENST00000526121	ENST00000531705		ChiTaRS3.1			BI820138	SYVN1	chr11	64895386	+	MRPL49	chr11	64895287	-
intron-3CDS	ENST00000371269	ENST00000358701		ChiTaRS3.1			AW997408	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
intron-3CDS	ENST00000537443	ENST00000358701		ChiTaRS3.1			AW997408	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
intron-3CDS	ENST00000535035	ENST00000358701		ChiTaRS3.1			AW997408	DHCR24	chr1	55319284	+	QSOX2	chr9	139118628	+
intron-intron	ENST00000506866	ENST00000506866		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000274031		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000404104		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000406354		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000506866	ENST00000608958		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000506866		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000274031		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000404104		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000406354		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000274031	ENST00000608958		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000506866		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000274031		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000404104		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000406354		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000404104	ENST00000608958		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000506866		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000274031		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000404104		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000406354		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000406354	ENST00000608958		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000506866		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000274031		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000404104		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000406354		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
intron-intron	ENST00000608958	ENST00000608958		ChiTaRS3.1			AA552768	SETD7	chr4	140452666	-	SETD7	chr4	140452774	+
3UTR-3CDS	ENST00000534336	ENST00000217131		ChiTaRS3.1			BI010328	MALAT1	chr11	65272238	-	CTSZ	chr20	57571780	-
intron-intron	ENST00000330978	ENST00000416247		ChiTaRS3.1			BE707878	BOLA2	chr16	30081325	-	SMIM13	chr6	11108428	-
intron-intron	ENST00000421587	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000421587	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000421587	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000421587	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000421587	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000421587	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000318588	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000361962	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378163	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378158	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378166	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000442742	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000472704	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000370081		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000230459		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000370089		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000509698		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000460985		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-intron	ENST00000378154	ENST00000472311		ChiTaRS3.1			DA259498	CASK	chrX	41552622	+	COX7A2	chr6	75949604	-
intron-3UTR	ENST00000371837	ENST00000343110		ChiTaRS3.1			DA313778	LIPA	chr10	90977996	-	PRELP	chr1	203458346	+
intron-3UTR	ENST00000487618	ENST00000343110		ChiTaRS3.1			DA313778	LIPA	chr10	90977996	-	PRELP	chr1	203458346	+
intron-3UTR	ENST00000336233	ENST00000343110		ChiTaRS3.1			DA313778	LIPA	chr10	90977996	-	PRELP	chr1	203458346	+
intron-3UTR	ENST00000456827	ENST00000343110		ChiTaRS3.1			DA313778	LIPA	chr10	90977996	-	PRELP	chr1	203458346	+
intron-5UTR	ENST00000380599	ENST00000378119		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-intron	ENST00000380599	ENST00000540769		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-intron	ENST00000380599	ENST00000378102		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-5UTR	ENST00000311403	ENST00000378119		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-intron	ENST00000311403	ENST00000540769		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-intron	ENST00000311403	ENST00000378102		ChiTaRS3.1			BQ951468	ZBTB4	chr17	7362706	-	C6orf62	chr6	24719559	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000394464	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000343796	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000415690	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000424646	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504572	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000394466	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000231509	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000416954	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000503201	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-3UTR	ENST00000504336	ENST00000415690		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000424646		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			DR980088	NR3C1	chr5	142657625	-	NR3C1	chr5	142657741	+
intron-intron	ENST00000409078	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000409078	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000409078	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000409078	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000409078	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000409078	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000409078	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000409078	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541859	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541859	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541859	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541859	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541859	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541859	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541859	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541859	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541377	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541377	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541377	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000541377	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541377	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541377	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541377	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000541377	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000455322	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000455322	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000455322	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000455322	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000455322	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000455322	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000455322	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000455322	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000397587	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000397587	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000397587	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000397587	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000397587	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000397587	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000397587	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000397587	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000263710	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000263710	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000263710	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000263710	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000263710	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000263710	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000263710	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000263710	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000545861	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000545861	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000545861	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000545861	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000545861	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000545861	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000545861	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000545861	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000430234	ENST00000360284		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000430234	ENST00000545748		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000430234	ENST00000550082		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-intron	ENST00000430234	ENST00000547206		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000430234	ENST00000243050		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000430234	ENST00000394825		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000430234	ENST00000394824		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-5UTR	ENST00000430234	ENST00000548232		ChiTaRS3.1			DB018378	CLASP1	chr2	122288584	+	NR4A1	chr12	52445226	+
intron-3UTR	ENST00000418115	ENST00000418115		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000418115	ENST00000454011		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000418115	ENST00000422781		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-intron	ENST00000418115	ENST00000265538		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000454011	ENST00000418115		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000454011	ENST00000454011		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000454011	ENST00000422781		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-intron	ENST00000454011	ENST00000265538		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000422781	ENST00000418115		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000422781	ENST00000454011		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000422781	ENST00000422781		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-intron	ENST00000422781	ENST00000265538		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000265538	ENST00000418115		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000265538	ENST00000454011		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-3UTR	ENST00000265538	ENST00000422781		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-intron	ENST00000265538	ENST00000265538		ChiTaRS3.1			AW189178	RHOA	chr3	49397569	-	RHOA	chr3	49397585	+
intron-5UTR	ENST00000485760	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000485760	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371236	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371236	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371234	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371234	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000420954	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000420954	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000439789	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000439789	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000414851	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000414851	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371231	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371231	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371230	ENST00000339600		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
intron-5UTR	ENST00000371230	ENST00000492822		ChiTaRS3.1			T12168	DAB1	chr1	57755725	-	NDUFA4	chr7	10979717	-
3UTR-intron	ENST00000589222	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000407086	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000390652	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000408905	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000588462	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
intron-intron	ENST00000585744	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000588874	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000585812	ENST00000390394		ChiTaRS3.1			BG954018	BCAS3	chr17	59470058	-	TRBV20-1	chr16	1988609	-
3UTR-intron	ENST00000358204	ENST00000397707		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000560611		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000354181		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000458406		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000397702		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000290209		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000558667		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000558589		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000451844		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000358204	ENST00000560164		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000397707		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000560611		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000354181		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000458406		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000397702		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000290209		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000558667		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000558589		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000451844		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000537767	ENST00000560164		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000397707		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000560611		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000354181		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000458406		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000397702		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000290209		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000558667		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000558589		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000451844		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
3UTR-intron	ENST00000393481	ENST00000560164		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000397707		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000560611		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000354181		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000458406		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000397702		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000290209		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000558667		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000558589		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000451844		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000485009	ENST00000560164		ChiTaRS3.1			AA142838	TES	chr7	115898429	-	SLC12A6	chr15	34524726	+
intron-intron	ENST00000227756	ENST00000361582		ChiTaRS3.1			BE222888	GALNT18	chr11	11292697	+	DZIP3	chr3	108409872	+
intron-3UTR	ENST00000227756	ENST00000463306		ChiTaRS3.1			BE222888	GALNT18	chr11	11292697	+	DZIP3	chr3	108409872	+
intron-intron	ENST00000526064	ENST00000361582		ChiTaRS3.1			BE222888	GALNT18	chr11	11292697	+	DZIP3	chr3	108409872	+
intron-3UTR	ENST00000526064	ENST00000463306		ChiTaRS3.1			BE222888	GALNT18	chr11	11292697	+	DZIP3	chr3	108409872	+
intron-intron	ENST00000519519	ENST00000519519		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000519519	ENST00000418210		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000519519	ENST00000458549		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000519519	ENST00000523902		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000418210	ENST00000519519		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000418210	ENST00000418210		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000418210	ENST00000458549		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000418210	ENST00000523902		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000458549	ENST00000519519		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000458549	ENST00000418210		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000458549	ENST00000458549		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000458549	ENST00000523902		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000523902	ENST00000519519		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000523902	ENST00000418210		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-3UTR	ENST00000523902	ENST00000458549		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000523902	ENST00000523902		ChiTaRS3.1			BF054968	TMEM64	chr8	91634417	+	TMEM64	chr8	91635074	-
intron-intron	ENST00000330175	ENST00000336314		ChiTaRS3.1			AW590118	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503131	ENST00000336314		ChiTaRS3.1			AW590118	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000503734	ENST00000336314		ChiTaRS3.1			AW590118	SAMD14	chr17	48191603	+	LARP1	chr5	154182544	-
intron-intron	ENST00000322536	ENST00000322536		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000322536	ENST00000526794		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000322536	ENST00000534221		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000526794	ENST00000322536		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000526794	ENST00000526794		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000526794	ENST00000534221		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000534221	ENST00000322536		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000534221	ENST00000526794		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000534221	ENST00000534221		ChiTaRS3.1			DA647188	DDX10	chr11	108674881	+	DDX10	chr11	108672930	+
intron-intron	ENST00000335895	ENST00000414350		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000343632		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000381756		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000405147		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000325180		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000337437		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000406772		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000488672		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000414350		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000343632		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000381756		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000405147		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000325180		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000337437		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000406772		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000488672		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000414350		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000343632		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000381756		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000405147		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000325180		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000337437		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000406772		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000488672		ChiTaRS3.1			BI562608	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
5UTR-3CDS	ENST00000332149	ENST00000539068		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000332149	ENST00000536438		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000332149	ENST00000357266		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000332149	ENST00000540787		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000332149	ENST00000542713		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000539068		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000536438		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000357266		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000398585	ENST00000540787		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000398585	ENST00000542713		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000539068		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000536438		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000357266		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000458356	ENST00000540787		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000458356	ENST00000542713		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000539068		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000536438		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000357266		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000497881	ENST00000540787		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000497881	ENST00000542713		ChiTaRS3.1			HM245387	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-intron	ENST00000379562	ENST00000379562		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000379562	ENST00000535925		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000379562	ENST00000463666		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000379562	ENST00000543003		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000535925	ENST00000379562		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000535925	ENST00000535925		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000535925	ENST00000463666		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000535925	ENST00000543003		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000463666	ENST00000379562		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000463666	ENST00000535925		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000463666	ENST00000463666		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000463666	ENST00000543003		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000543003	ENST00000379562		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000543003	ENST00000535925		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000543003	ENST00000463666		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
intron-intron	ENST00000543003	ENST00000543003		ChiTaRS3.1			CV376788	KIN	chr10	7827515	+	KIN	chr10	7822668	+
3UTR-intron	ENST00000310389	ENST00000377110		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000377111		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000377105		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000377106		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000360823		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000357533		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000396285		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000358082		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000396292		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000408909		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000396280		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000423814		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000377101		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000396283		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000361823		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000377097		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
3UTR-intron	ENST00000310389	ENST00000437699		ChiTaRS3.1			AK096568	ARL10	chr5	175800503	+	TRPM3	chr9	73966516	-
intron-intron	ENST00000336934	ENST00000361131		ChiTaRS3.1			BG991328	STARD13	chr13	33875173	-	PPP1R14C	chr6	150538180	+
intron-intron	ENST00000255486	ENST00000361131		ChiTaRS3.1			BG991328	STARD13	chr13	33875173	-	PPP1R14C	chr6	150538180	+
intron-intron	ENST00000399365	ENST00000361131		ChiTaRS3.1			BG991328	STARD13	chr13	33875173	-	PPP1R14C	chr6	150538180	+
intron-intron	ENST00000487412	ENST00000361131		ChiTaRS3.1			BG991328	STARD13	chr13	33875173	-	PPP1R14C	chr6	150538180	+
intron-intron	ENST00000439831	ENST00000361131		ChiTaRS3.1			BG991328	STARD13	chr13	33875173	-	PPP1R14C	chr6	150538180	+
intron-intron	ENST00000344938	ENST00000080059		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344938	ENST00000354334		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344938	ENST00000552960		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344938	ENST00000380610		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344938	ENST00000427332		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344938	ENST00000488927		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000080059		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000354334		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000552960		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000380610		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000427332		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000344408	ENST00000488927		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000080059		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000354334		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000552960		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000380610		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000427332		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-intron	ENST00000310917	ENST00000488927		ChiTaRS3.1			AI671208	EVC2	chr4	5630921	-	HDAC7	chr12	48185223	+
intron-3CDS	ENST00000377047	ENST00000414242		ChiTaRS3.1			BF155598	GPC6	chr13	94445040	+	MPHOSPH8	chr13	20221321	+
intron-3CDS	ENST00000377047	ENST00000361479		ChiTaRS3.1			BF155598	GPC6	chr13	94445040	+	MPHOSPH8	chr13	20221321	+
intron-intron	ENST00000377047	ENST00000496525		ChiTaRS3.1			BF155598	GPC6	chr13	94445040	+	MPHOSPH8	chr13	20221321	+
intron-intron	ENST00000320474	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000320474	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392779	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392780	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000392781	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000473285	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000417187	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000488170	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000398158		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000398165		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000359624		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000352178		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000398168		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000544202		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
intron-intron	ENST00000494818	ENST00000470912		ChiTaRS3.1			BE551948	B3GALNT1	chr3	160801958	+	CBS	chr21	44483735	-
5CDS-intron	ENST00000234160	ENST00000461783		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000449545		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000367174		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000456144		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000318981		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000360366		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000529824		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000456877		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000528391		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000234160	ENST00000275246		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000461783		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000449545		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000367174		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000456144		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000318981		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000360366		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000529824		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000456877		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000528391		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
intron-intron	ENST00000493692	ENST00000275246		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000461783		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000449545		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000367174		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000456144		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000318981		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000360366		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000529824		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000456877		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000528391		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
5CDS-intron	ENST00000452526	ENST00000275246		ChiTaRS3.1			BI010428	GORASP2	chr2	171811224	+	TIAM2	chr6	155273037	-
3UTR-intron	ENST00000340385	ENST00000311772		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
3UTR-intron	ENST00000340385	ENST00000236412		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
3UTR-intron	ENST00000340385	ENST00000373931		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
3UTR-intron	ENST00000340385	ENST00000486634		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
5CDS-intron	ENST00000470017	ENST00000311772		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
5CDS-intron	ENST00000470017	ENST00000236412		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
5CDS-intron	ENST00000470017	ENST00000373931		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
5CDS-intron	ENST00000470017	ENST00000486634		ChiTaRS3.1			BM477858	PRDX6	chr1	173457150	+	PPP1R8	chr1	28167331	-
3UTR-3CDS	ENST00000356654	ENST00000356654		ChiTaRS3.1			AW175968	ATN1	chr12	7051265	-	ATN1	chr12	7050552	+
3UTR-3CDS	ENST00000356654	ENST00000396684		ChiTaRS3.1			AW175968	ATN1	chr12	7051265	-	ATN1	chr12	7050552	+
3UTR-3CDS	ENST00000396684	ENST00000356654		ChiTaRS3.1			AW175968	ATN1	chr12	7051265	-	ATN1	chr12	7050552	+
3UTR-3CDS	ENST00000396684	ENST00000396684		ChiTaRS3.1			AW175968	ATN1	chr12	7051265	-	ATN1	chr12	7050552	+
intron-intron	ENST00000453546	ENST00000453546		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000453546	ENST00000374852		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000453546	ENST00000478487		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000453546		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000374852		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000478487		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000453546		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000374852		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000478487		ChiTaRS3.1			BU607928	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000313899	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000313899	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000313899	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000313899	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000313899	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000313899	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000353341	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000543098	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000352301	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000508119	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000313899		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000353341		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000543098		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000352301		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000508119		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-intron	ENST00000541060	ENST00000541060		ChiTaRS3.1			BG999638	HNRNPD	chr4	83293322	+	HNRNPD	chr4	83284200	-
intron-5UTR	ENST00000228945	ENST00000261448		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000228945	ENST00000456138		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-intron	ENST00000228945	ENST00000488931		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000541644	ENST00000261448		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000541644	ENST00000456138		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-intron	ENST00000541644	ENST00000488931		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000539131	ENST00000261448		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000539131	ENST00000456138		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-intron	ENST00000539131	ENST00000488931		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000541546	ENST00000261448		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-5UTR	ENST00000541546	ENST00000456138		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
intron-intron	ENST00000541546	ENST00000488931		ChiTaRS3.1			DA559468	ARHGDIB	chr12	15100861	-	CASQ2	chr1	116311335	-
3UTR-3UTR	ENST00000356401	ENST00000356401		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-intron	ENST00000356401	ENST00000449376		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-intron	ENST00000356401	ENST00000490095		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-3UTR	ENST00000449376	ENST00000356401		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-intron	ENST00000449376	ENST00000449376		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-intron	ENST00000449376	ENST00000490095		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
intron-3UTR	ENST00000490095	ENST00000356401		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
intron-intron	ENST00000490095	ENST00000449376		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
intron-intron	ENST00000490095	ENST00000490095		ChiTaRS3.1			CK299468	ARIH2	chr3	49020847	-	ARIH2	chr3	49022072	-
3UTR-3UTR	ENST00000217109	ENST00000217109		ChiTaRS3.1			CA843958	CSTF1	chr20	54979288	-	CSTF1	chr20	54979233	+
3UTR-3UTR	ENST00000217109	ENST00000493039		ChiTaRS3.1			CA843958	CSTF1	chr20	54979288	-	CSTF1	chr20	54979233	+
3UTR-3UTR	ENST00000493039	ENST00000217109		ChiTaRS3.1			CA843958	CSTF1	chr20	54979288	-	CSTF1	chr20	54979233	+
3UTR-3UTR	ENST00000493039	ENST00000493039		ChiTaRS3.1			CA843958	CSTF1	chr20	54979288	-	CSTF1	chr20	54979233	+
intron-intron	ENST00000482728	ENST00000375820		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000482728	ENST00000543140		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000482728	ENST00000467182		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000307106	ENST00000375820		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000307106	ENST00000543140		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000307106	ENST00000467182		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000477703	ENST00000375820		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000477703	ENST00000543140		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000477703	ENST00000467182		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000476842	ENST00000375820		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000476842	ENST00000543140		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
5CDS-intron	ENST00000476842	ENST00000467182		ChiTaRS3.1			AU144148	SMIM4	chr3	52570821	-	COL4A1	chr13	110885115	+
intron-intron	ENST00000381844	ENST00000414305		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000543135		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000427148		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000357639		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000358229		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000381844	ENST00000470930		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000414305		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000543135		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000427148		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000357639		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000358229		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000238081	ENST00000470930		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000414305		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000543135		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000427148		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000357639		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000358229		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-intron	ENST00000474715	ENST00000470930		ChiTaRS3.1			BE936958	YWHAQ	chr2	9725010	-	ENPP3	chr6	132062839	-
intron-3UTR	ENST00000372954	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372954	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372954	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372954	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372954	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372954	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000393608	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000541172	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000357558	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000325721	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000538431	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000277465	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372948	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000372938	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000373606		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000397156		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000397150		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000397152		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000373605		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-3UTR	ENST00000476727	ENST00000397151		ChiTaRS3.1			BI045278	CIZ1	chr9	130929122	+	MANBAL	chr20	35944902	-
intron-intron	ENST00000467803	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000467803	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000447325	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000321256	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000427641	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000452404	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000455147		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000266563		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000545220		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000434354		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000420616		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000412720		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-intron	ENST00000422610	ENST00000266564		ChiTaRS3.1			AA625748	NCBP2	chr3	196662667	+	PEX5	chr12	7362434	-
intron-3CDS	ENST00000259455	ENST00000259455		ChiTaRS3.1			BP311968	GABBR2	chr9	101052698	-	GABBR2	chr9	101156518	-
intron-intron	ENST00000259455	ENST00000477471		ChiTaRS3.1			BP311968	GABBR2	chr9	101052698	-	GABBR2	chr9	101156518	-
intron-3CDS	ENST00000477471	ENST00000259455		ChiTaRS3.1			BP311968	GABBR2	chr9	101052698	-	GABBR2	chr9	101156518	-
intron-intron	ENST00000477471	ENST00000477471		ChiTaRS3.1			BP311968	GABBR2	chr9	101052698	-	GABBR2	chr9	101156518	-
intron-intron	ENST00000550735	ENST00000550735		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000551404		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000547305		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000546394		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000550735		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000551404		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000547305		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000546394		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000550735		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000551404		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000547305		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000546394		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000550735		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000551404		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000547305		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000546394		ChiTaRS3.1			BP398708	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
3UTR-intron	ENST00000266458	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000266458	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000421801	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000544284	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545047	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000543602	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000545887	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000539289	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000546017	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-intron	ENST00000535576	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000373566		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000373563		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000409480		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000409547		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000409196		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000409451		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000482666		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
3UTR-intron	ENST00000539170	ENST00000452341		ChiTaRS3.1			AI215508	GABARAPL1	chr12	10375604	-	GIGYF2	chr2	233621063	-
intron-3UTR	ENST00000399300	ENST00000300571		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000399300	ENST00000569102		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000399300	ENST00000535671		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-3UTR	ENST00000399300	ENST00000569479		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000399300	ENST00000537135		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000399300	ENST00000569847		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-3UTR	ENST00000517700	ENST00000300571		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000517700	ENST00000569102		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000517700	ENST00000535671		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-3UTR	ENST00000517700	ENST00000569479		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000517700	ENST00000537135		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000517700	ENST00000569847		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-3UTR	ENST00000520961	ENST00000300571		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000520961	ENST00000569102		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000520961	ENST00000535671		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-3UTR	ENST00000520961	ENST00000569479		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000520961	ENST00000537135		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000520961	ENST00000569847		ChiTaRS3.1			AV723288	RBM12B	chr8	94746740	+	GPRC5B	chr16	19870644	-
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AW976998	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-3UTR	ENST00000358338	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000358338	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367567	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367567	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000357570	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000357570	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367570	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367570	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000526775	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000526775	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000360108	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000360108	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367573	ENST00000478827		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3UTR	ENST00000367573	ENST00000338625		ChiTaRS3.1			DA750008	CACNA1E	chr1	181579622	+	SLC25A15	chr13	41381430	+
intron-3CDS	ENST00000235090	ENST00000235090		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3CDS	ENST00000235090	ENST00000411751		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-5UTR	ENST00000235090	ENST00000497278		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3CDS	ENST00000411751	ENST00000235090		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3CDS	ENST00000411751	ENST00000411751		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-5UTR	ENST00000411751	ENST00000497278		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3CDS	ENST00000497278	ENST00000235090		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3CDS	ENST00000497278	ENST00000411751		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-5UTR	ENST00000497278	ENST00000497278		ChiTaRS3.1			AA428438	WDR77	chr1	111985982	+	WDR77	chr1	111984662	-
intron-3UTR	ENST00000394936	ENST00000394936		ChiTaRS3.1			AA632698	PSAP	chr10	73576371	-	PSAP	chr10	73576249	+
intron-3UTR	ENST00000394936	ENST00000394934		ChiTaRS3.1			AA632698	PSAP	chr10	73576371	-	PSAP	chr10	73576249	+
intron-3UTR	ENST00000394934	ENST00000394936		ChiTaRS3.1			AA632698	PSAP	chr10	73576371	-	PSAP	chr10	73576249	+
intron-3UTR	ENST00000394934	ENST00000394934		ChiTaRS3.1			AA632698	PSAP	chr10	73576371	-	PSAP	chr10	73576249	+
intron-intron	ENST00000407073	ENST00000258484		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000407073	ENST00000409654		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000478804	ENST00000258484		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000478804	ENST00000409654		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000404807	ENST00000258484		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
intron-intron	ENST00000404807	ENST00000409654		ChiTaRS3.1			BE700848	MBD5	chr2	149133055	-	EPC2	chr2	149880186	-
Frame-shit	ENST00000252599	ENST00000252599		ChiTaRS3.1			Z25328	COLGALT1	chr19	17690401	+	COLGALT1	chr19	17688040	-
5CDS-intron	ENST00000252599	ENST00000601354		ChiTaRS3.1			Z25328	COLGALT1	chr19	17690401	+	COLGALT1	chr19	17688040	-
intron-3CDS	ENST00000601354	ENST00000252599		ChiTaRS3.1			Z25328	COLGALT1	chr19	17690401	+	COLGALT1	chr19	17688040	-
intron-intron	ENST00000601354	ENST00000601354		ChiTaRS3.1			Z25328	COLGALT1	chr19	17690401	+	COLGALT1	chr19	17688040	-
In-frame	ENST00000533760	ENST00000408982		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000533760	ENST00000262477		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000533760	ENST00000537505		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000533760	ENST00000546142		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000533760	ENST00000341923		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
5CDS-3UTR	ENST00000533760	ENST00000570487		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3CDS	ENST00000397957	ENST00000408982		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3CDS	ENST00000397957	ENST00000262477		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3CDS	ENST00000397957	ENST00000537505		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3CDS	ENST00000397957	ENST00000546142		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3CDS	ENST00000397957	ENST00000341923		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
3UTR-3UTR	ENST00000397957	ENST00000570487		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000316851	ENST00000408982		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000316851	ENST00000262477		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000316851	ENST00000537505		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000316851	ENST00000546142		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
In-frame	ENST00000316851	ENST00000341923		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
5CDS-3UTR	ENST00000316851	ENST00000570487		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3CDS	ENST00000401611	ENST00000408982		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3CDS	ENST00000401611	ENST00000262477		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3CDS	ENST00000401611	ENST00000537505		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3CDS	ENST00000401611	ENST00000546142		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3CDS	ENST00000401611	ENST00000341923		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-3UTR	ENST00000401611	ENST00000570487		ChiTaRS3.1			BE810468	NCAM1	chr11	113130909	-	RABEP1	chr17	5238539	-
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			AI636778	MEG3	chr14	101316059	-	MEG3	chr14	101318950	-
intron-intron	ENST00000377575	ENST00000375592		ChiTaRS3.1			AI862618	HMGN4	chr6	26539748	-	FBXO42	chr1	16607739	+
intron-intron	ENST00000377575	ENST00000478089		ChiTaRS3.1			AI862618	HMGN4	chr6	26539748	-	FBXO42	chr1	16607739	+
intron-intron	ENST00000477243	ENST00000375592		ChiTaRS3.1			AI862618	HMGN4	chr6	26539748	-	FBXO42	chr1	16607739	+
intron-intron	ENST00000477243	ENST00000478089		ChiTaRS3.1			AI862618	HMGN4	chr6	26539748	-	FBXO42	chr1	16607739	+
intron-intron	ENST00000300853	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000300853	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000423698	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000588738	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000340192	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000591636	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000589165	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000421182		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000357867		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000323926		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000336916		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000354785		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000357009		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000346544		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000345488		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000359671		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000446046		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000443816		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000432072		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000356005		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000490833		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
intron-intron	ENST00000013807	ENST00000426059		ChiTaRS3.1			BF809968	ERCC1	chr19	45975895	+	FN1	chr2	216273026	+
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE932658	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000428554	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000428554	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000428554	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000507855	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000507855	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000475614	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000475614	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000342022	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000342022	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000340612	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000340612	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000525364		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000270176		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000420247		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000533862		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000279270		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000524944		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-3CDS	ENST00000390640	ENST00000527009		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000390640	ENST00000534462		ChiTaRS3.1			BQ722688	CCDC30	chr1	42942305	+	SCYL1	chr11	65304181	-
intron-intron	ENST00000441493	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000441493	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000441493	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000400561	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000400561	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000400561	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000444520	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000444520	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000444520	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000414725	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000414725	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000414725	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000383094	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000383094	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000383094	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000207726	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000207726	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000207726	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000429452	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000429452	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000429452	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000585038	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000585038	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000585038	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000580469	ENST00000265113		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000580469	ENST00000506725		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000580469	ENST00000381918		ChiTaRS3.1			BE936478	MICAL3	chr22	18272609	-	SLC1A3	chr5	36662106	-
intron-intron	ENST00000270112	ENST00000331889		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000270112	ENST00000328834		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000270112	ENST00000538368		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000270112	ENST00000454516		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000270112	ENST00000463697		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000465574	ENST00000331889		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000465574	ENST00000328834		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000465574	ENST00000538368		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000465574	ENST00000454516		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
intron-intron	ENST00000465574	ENST00000463697		ChiTaRS3.1			AW937598	HUNK	chr21	33312033	-	CNOT10	chr3	32810076	+
3UTR-3UTR	ENST00000375859	ENST00000375859		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000375859	ENST00000541629		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000375859	ENST00000469017		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000541629	ENST00000375859		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000541629	ENST00000541629		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000541629	ENST00000469017		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000469017	ENST00000375859		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000469017	ENST00000541629		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
3UTR-3UTR	ENST00000469017	ENST00000469017		ChiTaRS3.1			BM710848	SPIN1	chr9	91090687	-	SPIN1	chr9	91090525	+
intron-intron	ENST00000546309	ENST00000361677		ChiTaRS3.1			AK091428	KDM1B	chr6	18222929	+	RUNDC1	chr17	41138404	-
3UTR-intron	ENST00000397244	ENST00000361677		ChiTaRS3.1			AK091428	KDM1B	chr6	18222929	+	RUNDC1	chr17	41138404	-
3UTR-intron	ENST00000388870	ENST00000361677		ChiTaRS3.1			AK091428	KDM1B	chr6	18222929	+	RUNDC1	chr17	41138404	-
3UTR-intron	ENST00000297792	ENST00000361677		ChiTaRS3.1			AK091428	KDM1B	chr6	18222929	+	RUNDC1	chr17	41138404	-
5UTR-3CDS	ENST00000369409	ENST00000403766		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
5UTR-intron	ENST00000369409	ENST00000376440		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
5UTR-intron	ENST00000369409	ENST00000460562		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-3CDS	ENST00000369407	ENST00000403766		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-intron	ENST00000369407	ENST00000376440		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-intron	ENST00000369407	ENST00000460562		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-3CDS	ENST00000482968	ENST00000403766		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-intron	ENST00000482968	ENST00000376440		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
intron-intron	ENST00000482968	ENST00000460562		ChiTaRS3.1			BC004528	PHGDH	chr1	120254576	-	UBAC2	chr13	99896770	+
In-frame	ENST00000261973	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000261973	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000261973	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000261973	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000261973	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
5CDS-intron	ENST00000261973	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000540173	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000540173	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000540173	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000540173	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000540173	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
5CDS-intron	ENST00000540173	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000527432	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000527432	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000527432	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000527432	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000527432	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
5CDS-intron	ENST00000527432	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000525321	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000525321	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000525321	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000525321	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000525321	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
5CDS-intron	ENST00000525321	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000526754	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000526754	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000526754	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000526754	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
In-frame	ENST00000526754	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
5CDS-intron	ENST00000526754	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-3CDS	ENST00000532483	ENST00000261973		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-3CDS	ENST00000532483	ENST00000540173		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-3CDS	ENST00000532483	ENST00000527432		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-3CDS	ENST00000532483	ENST00000525321		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-3CDS	ENST00000532483	ENST00000526754		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
intron-intron	ENST00000532483	ENST00000532483		ChiTaRS3.1			BX506968	RBM25	chr14	73563660	-	RBM25	chr14	73544130	+
3UTR-3UTR	ENST00000290551	ENST00000290551		ChiTaRS3.1			CD240348	BTG2	chr1	203278712	+	BTG2	chr1	203278580	-
intron-intron	ENST00000355451	ENST00000528697		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000355451	ENST00000530763		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000355451	ENST00000534577		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000355451	ENST00000278198		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000355451	ENST00000527150		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000460110	ENST00000528697		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000460110	ENST00000530763		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000460110	ENST00000534577		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000460110	ENST00000278198		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000460110	ENST00000527150		ChiTaRS3.1			BF961768	NUDCD3	chr7	44443249	+	LRRC4C	chr11	40579764	-
intron-intron	ENST00000222219	ENST00000253233		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-intron	ENST00000222219	ENST00000366329		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-intron	ENST00000222219	ENST00000429587		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-intron	ENST00000538460	ENST00000253233		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-intron	ENST00000538460	ENST00000366329		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-intron	ENST00000538460	ENST00000429587		ChiTaRS3.1			DA604038	DNASE2	chr19	12991906	-	C12orf65	chr12	123737224	-
intron-3CDS	ENST00000276420	ENST00000276420		ChiTaRS3.1			BI911198	DOK2	chr8	21767116	-	DOK2	chr8	21769958	-
intron-5UTR	ENST00000276420	ENST00000544659		ChiTaRS3.1			BI911198	DOK2	chr8	21767116	-	DOK2	chr8	21769958	-
intron-3CDS	ENST00000544659	ENST00000276420		ChiTaRS3.1			BI911198	DOK2	chr8	21767116	-	DOK2	chr8	21769958	-
intron-5UTR	ENST00000544659	ENST00000544659		ChiTaRS3.1			BI911198	DOK2	chr8	21767116	-	DOK2	chr8	21769958	-
intron-5UTR	ENST00000284049	ENST00000301821		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-intron	ENST00000284049	ENST00000443003		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-intron	ENST00000284049	ENST00000478027		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-5UTR	ENST00000511067	ENST00000301821		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-intron	ENST00000511067	ENST00000443003		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-intron	ENST00000511067	ENST00000478027		ChiTaRS3.1			AK129928	CHD1	chr5	98214067	-	RPSA	chr3	39448210	+
intron-3UTR	ENST00000406775	ENST00000264968		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000406775	ENST00000393487		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000406775	ENST00000414521		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000406775	ENST00000409391		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000406775	ENST00000461884		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000406775	ENST00000495056		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000342771	ENST00000264968		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000342771	ENST00000393487		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000342771	ENST00000414521		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000342771	ENST00000409391		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000342771	ENST00000461884		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000342771	ENST00000495056		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000403018	ENST00000264968		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000403018	ENST00000393487		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000403018	ENST00000414521		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000403018	ENST00000409391		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000403018	ENST00000461884		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000403018	ENST00000495056		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000489774	ENST00000264968		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000489774	ENST00000393487		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000489774	ENST00000414521		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000489774	ENST00000409391		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000489774	ENST00000461884		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-intron	ENST00000489774	ENST00000495056		ChiTaRS3.1			AU253288	AUTS2	chr7	69638074	+	MGAT4A	chr2	99239368	-
intron-3UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-3UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			BE812478	TIMP2	chr17	76850200	-	TIMP2	chr17	76851173	-
intron-intron	ENST00000350997	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000350997	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000350997	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000350997	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000350997	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000536991	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000536991	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000536991	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000536991	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000536991	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000433932	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000433932	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000433932	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000433932	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000433932	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
5CDS-intron	ENST00000460649	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
5CDS-intron	ENST00000460649	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
5CDS-intron	ENST00000460649	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
5CDS-intron	ENST00000460649	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
5CDS-intron	ENST00000460649	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000542506	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000542506	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000542506	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000542506	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000542506	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000541683	ENST00000264335		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000541683	ENST00000571732		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000541683	ENST00000573026		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000541683	ENST00000575977		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-intron	ENST00000541683	ENST00000498643		ChiTaRS3.1			AW937108	FADS1	chr11	61569695	+	YWHAE	chr17	1270940	+
intron-3CDS	ENST00000398022	ENST00000420329		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000398022	ENST00000560098		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000398022	ENST00000268184		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000398022	ENST00000558619		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-3CDS	ENST00000217315	ENST00000420329		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000217315	ENST00000560098		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000217315	ENST00000268184		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000217315	ENST00000558619		ChiTaRS3.1			AW889448	TM9SF4	chr20	30712864	-	CRTC3	chr15	91172691	+
intron-intron	ENST00000222254	ENST00000222254		ChiTaRS3.1			BG314628	PIK3R2	chr19	18286174	-	PIK3R2	chr19	18284631	+
intron-3UTR	ENST00000222254	ENST00000593731		ChiTaRS3.1			BG314628	PIK3R2	chr19	18286174	-	PIK3R2	chr19	18284631	+
3UTR-intron	ENST00000593731	ENST00000222254		ChiTaRS3.1			BG314628	PIK3R2	chr19	18286174	-	PIK3R2	chr19	18284631	+
3UTR-3UTR	ENST00000593731	ENST00000593731		ChiTaRS3.1			BG314628	PIK3R2	chr19	18286174	-	PIK3R2	chr19	18284631	+
intron-3UTR	ENST00000397901	ENST00000397901		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000397901	ENST00000253475		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000397901	ENST00000535997		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000397901	ENST00000550102		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000397901	ENST00000547614		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000253475	ENST00000397901		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000253475	ENST00000253475		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000253475	ENST00000535997		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000253475	ENST00000550102		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000253475	ENST00000547614		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000535997	ENST00000397901		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000535997	ENST00000253475		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000535997	ENST00000535997		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000535997	ENST00000550102		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000535997	ENST00000547614		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000550102	ENST00000397901		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000550102	ENST00000253475		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000550102	ENST00000535997		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000550102	ENST00000550102		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000550102	ENST00000547614		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000547614	ENST00000397901		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000547614	ENST00000253475		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3UTR	ENST00000547614	ENST00000535997		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000547614	ENST00000550102		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-intron	ENST00000547614	ENST00000547614		ChiTaRS3.1			BQ223078	CHMP1A	chr16	89711450	+	CHMP1A	chr16	89711410	-
intron-3CDS	ENST00000477033	ENST00000302182		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
intron-3CDS	ENST00000477033	ENST00000535788		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
intron-intron	ENST00000477033	ENST00000578649		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
intron-intron	ENST00000477033	ENST00000395839		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
intron-intron	ENST00000477033	ENST00000395837		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-3CDS	ENST00000370167	ENST00000302182		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-3CDS	ENST00000370167	ENST00000535788		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000370167	ENST00000578649		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000370167	ENST00000395839		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000370167	ENST00000395837		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-3CDS	ENST00000342782	ENST00000302182		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-3CDS	ENST00000342782	ENST00000535788		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000342782	ENST00000578649		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000342782	ENST00000395839		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
3UTR-intron	ENST00000342782	ENST00000395837		ChiTaRS3.1			BQ654128	DUSP9	chrX	152916182	-	UBB	chr17	16285234	+
intron-intron	ENST00000459809	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000459809	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000459809	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000459809	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000459809	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000459809	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-3UTR	ENST00000459809	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-5UTR	ENST00000459809	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374512	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-3UTR	ENST00000374512	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-5UTR	ENST00000374512	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000374516	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-3UTR	ENST00000374516	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-5UTR	ENST00000374516	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000442136	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-3UTR	ENST00000442136	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-5UTR	ENST00000442136	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000454914	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-3UTR	ENST00000454914	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-5UTR	ENST00000454914	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-intron	ENST00000427869	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-3UTR	ENST00000427869	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
5CDS-5UTR	ENST00000427869	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000487460	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-3UTR	ENST00000487460	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-5UTR	ENST00000487460	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000459809		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000374512		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000374516		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000442136		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000454914		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-intron	ENST00000475137	ENST00000427869		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-3UTR	ENST00000475137	ENST00000487460		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
3UTR-5UTR	ENST00000475137	ENST00000475137		ChiTaRS3.1			BE706288	PHF1	chr6	4863991	-	PHF1	chr6	4863276	+
intron-intron	ENST00000373913	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000373913		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000401952		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000339266		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000475894		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			BM929548	DLGAP4	chr20	35138453	-	DLGAP4	chr20	35146400	-
intron-3UTR	ENST00000329235	ENST00000329235		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000329235	ENST00000380291		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000329235	ENST00000479184		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000329235	ENST00000545766		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000329235	ENST00000421527		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-3UTR	ENST00000380291	ENST00000329235		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000380291	ENST00000380291		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000380291	ENST00000479184		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000380291	ENST00000545766		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000380291	ENST00000421527		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-3UTR	ENST00000479184	ENST00000329235		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000479184	ENST00000380291		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000479184	ENST00000479184		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000479184	ENST00000545766		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000479184	ENST00000421527		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-3UTR	ENST00000545766	ENST00000329235		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000545766	ENST00000380291		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000545766	ENST00000479184		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000545766	ENST00000545766		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000545766	ENST00000421527		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-3UTR	ENST00000421527	ENST00000329235		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000421527	ENST00000380291		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000421527	ENST00000479184		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000421527	ENST00000545766		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-intron	ENST00000421527	ENST00000421527		ChiTaRS3.1			AA193118	AP1S2	chrX	15844416	+	AP1S2	chrX	15844518	-
intron-3UTR	ENST00000199940	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000199940	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
3UTR-3UTR	ENST00000360351	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
3UTR-3UTR	ENST00000360351	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000361559	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000361559	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
3UTR-3UTR	ENST00000392194	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
3UTR-3UTR	ENST00000392194	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000447185	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000447185	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000475600	ENST00000310864		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000475600	ENST00000349820		ChiTaRS3.1			BE765658	MAP2	chr2	210598216	-	IQCB1	chr3	121489056	+
intron-3UTR	ENST00000409900	ENST00000228827		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409900	ENST00000543199		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409900	ENST00000537466		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-intron	ENST00000409900	ENST00000552180		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000488080	ENST00000228827		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000488080	ENST00000543199		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000488080	ENST00000537466		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-intron	ENST00000488080	ENST00000552180		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409156	ENST00000228827		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409156	ENST00000543199		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409156	ENST00000537466		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-intron	ENST00000409156	ENST00000552180		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000295497	ENST00000228827		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000295497	ENST00000543199		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000295497	ENST00000537466		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-intron	ENST00000295497	ENST00000552180		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409597	ENST00000228827		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409597	ENST00000543199		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3UTR	ENST00000409597	ENST00000537466		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-intron	ENST00000409597	ENST00000552180		ChiTaRS3.1			AW015028	CHN1	chr2	175705636	+	GPN3	chr12	110890729	+
intron-3CDS	ENST00000375915	ENST00000340990		ChiTaRS3.1			BF961218	FAM155A	chr13	108372496	+	ADIPOR1	chr1	202911318	+
intron-3CDS	ENST00000375915	ENST00000436244		ChiTaRS3.1			BF961218	FAM155A	chr13	108372496	+	ADIPOR1	chr1	202911318	+
intron-intron	ENST00000375915	ENST00000367254		ChiTaRS3.1			BF961218	FAM155A	chr13	108372496	+	ADIPOR1	chr1	202911318	+
3UTR-3UTR	ENST00000255641	ENST00000255641		ChiTaRS3.1			BF064078	CSNK1G2	chr19	1980207	-	CSNK1G2	chr19	1980831	-
3UTR-intron	ENST00000255641	ENST00000587123		ChiTaRS3.1			BF064078	CSNK1G2	chr19	1980207	-	CSNK1G2	chr19	1980831	-
intron-3UTR	ENST00000587123	ENST00000255641		ChiTaRS3.1			BF064078	CSNK1G2	chr19	1980207	-	CSNK1G2	chr19	1980831	-
intron-intron	ENST00000587123	ENST00000587123		ChiTaRS3.1			BF064078	CSNK1G2	chr19	1980207	-	CSNK1G2	chr19	1980831	-
intron-intron	ENST00000538486	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000538486	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000397323	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000320203	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000287771	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000339877	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000517860	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520161	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000519647	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520191	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000538486		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000397323		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000320203		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000287771		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000339877		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000517860		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000520161		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000519647		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000520191		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
intron-intron	ENST00000520916	ENST00000520916		ChiTaRS3.1			AA456988	RBPMS	chr8	30373910	-	RBPMS	chr8	30374358	+
3UTR-3CDS	ENST00000322764	ENST00000322764		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-3CDS	ENST00000322764	ENST00000449423		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000322764	ENST00000392910		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000322764	ENST00000477373		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-3CDS	ENST00000449423	ENST00000322764		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-3CDS	ENST00000449423	ENST00000449423		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000449423	ENST00000392910		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000449423	ENST00000477373		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-3CDS	ENST00000392910	ENST00000322764		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-3CDS	ENST00000392910	ENST00000449423		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000392910	ENST00000392910		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
3UTR-intron	ENST00000392910	ENST00000477373		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
intron-3CDS	ENST00000477373	ENST00000322764		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
intron-3CDS	ENST00000477373	ENST00000449423		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
intron-intron	ENST00000477373	ENST00000392910		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
intron-intron	ENST00000477373	ENST00000477373		ChiTaRS3.1			BU616088	ZYX	chr7	143088137	-	ZYX	chr7	143078840	+
intron-3CDS	ENST00000546244	ENST00000546244		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-5UTR	ENST00000546244	ENST00000343810		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000546244	ENST00000550165		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000546244	ENST00000547182		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000546244	ENST00000357123		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-3CDS	ENST00000343810	ENST00000546244		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-5UTR	ENST00000343810	ENST00000343810		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000343810	ENST00000550165		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000343810	ENST00000547182		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000343810	ENST00000357123		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-3CDS	ENST00000550165	ENST00000546244		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-5UTR	ENST00000550165	ENST00000343810		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000550165	ENST00000550165		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000550165	ENST00000547182		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000550165	ENST00000357123		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-3CDS	ENST00000547182	ENST00000546244		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-5UTR	ENST00000547182	ENST00000343810		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000547182	ENST00000550165		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000547182	ENST00000547182		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000547182	ENST00000357123		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-3CDS	ENST00000357123	ENST00000546244		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-5UTR	ENST00000357123	ENST00000343810		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000357123	ENST00000550165		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000357123	ENST00000547182		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
intron-intron	ENST00000357123	ENST00000357123		ChiTaRS3.1			W26888	MCRS1	chr12	49953262	+	MCRS1	chr12	49961911	-
In-frame	ENST00000264485	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
In-frame	ENST00000264485	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000264485	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000264485	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000264485	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000264485	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
In-frame	ENST00000425175	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
In-frame	ENST00000425175	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000425175	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000425175	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000425175	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000425175	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000351898	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000351898	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000351898	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000351898	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000351898	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000351898	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
In-frame	ENST00000340595	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
In-frame	ENST00000340595	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000340595	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000340595	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000340595	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
5CDS-intron	ENST00000340595	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000514331	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000514331	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000514331	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000514331	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000514331	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000514331	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000512686	ENST00000264485		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000512686	ENST00000425175		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000512686	ENST00000351898		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000512686	ENST00000340595		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000512686	ENST00000514331		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-intron	ENST00000512686	ENST00000512686		ChiTaRS3.1			W39298	SLC4A4	chr4	72412121	-	SLC4A4	chr4	72413363	+
intron-3CDS	ENST00000265000	ENST00000333957		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000446597		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000536386		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000396028		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000542676		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000544930		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000265000	ENST00000545552		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000265000	ENST00000540703		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000333957		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000446597		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000536386		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000396028		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000542676		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000544930		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000512285	ENST00000545552		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000512285	ENST00000540703		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000333957		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000446597		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000536386		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000396028		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000542676		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000544930		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-3CDS	ENST00000502407	ENST00000545552		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
intron-5UTR	ENST00000502407	ENST00000540703		ChiTaRS3.1			AA262608	GALNT7	chr4	174170474	-	C2CD5	chr12	22676440	+
3UTR-3CDS	ENST00000301740	ENST00000301740		ChiTaRS3.1			BQ028758	SRRM2	chr16	2821108	-	SRRM2	chr16	2816143	+
3UTR-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			BQ028758	SRRM2	chr16	2821108	-	SRRM2	chr16	2816143	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			BQ028758	SRRM2	chr16	2821108	-	SRRM2	chr16	2816143	+
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			BQ028758	SRRM2	chr16	2821108	-	SRRM2	chr16	2816143	+
3UTR-intron	ENST00000553116	ENST00000461804		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000553116	ENST00000295926		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000553116	ENST00000479052		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000553116	ENST00000295925		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000360299	ENST00000461804		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000360299	ENST00000295926		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000360299	ENST00000479052		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000360299	ENST00000295925		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000448789	ENST00000461804		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000448789	ENST00000295926		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000448789	ENST00000479052		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
3UTR-intron	ENST00000448789	ENST00000295925		ChiTaRS3.1			BF799938	RAB5B	chr12	56386704	-	CCNL1	chr3	156866235	+
intron-intron	ENST00000347159	ENST00000493121		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
intron-intron	ENST00000347159	ENST00000531327		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
intron-3UTR	ENST00000347159	ENST00000234256		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
5CDS-intron	ENST00000376588	ENST00000493121		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
5CDS-intron	ENST00000376588	ENST00000531327		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
5CDS-3UTR	ENST00000376588	ENST00000234256		ChiTaRS3.1			BC001618	PSAT1	chr9	80945011	+	SLC1A4	chr2	65249448	+
intron-5UTR	ENST00000444397	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000444397	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000444397	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000444397	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000444397	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000444397	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000360694	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000360694	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000360694	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000360694	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000360694	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000360694	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000418635	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000418635	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000418635	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000418635	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000418635	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000418635	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000448077	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000448077	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000448077	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000448077	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000448077	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000448077	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000337400	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000337400	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000337400	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000337400	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000337400	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000337400	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000311565	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000311565	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000311565	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000311565	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000311565	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000311565	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000540939	ENST00000354532		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-5UTR	ENST00000540939	ENST00000599846		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000540939	ENST00000596957		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000540939	ENST00000347545		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000540939	ENST00000378152		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
intron-intron	ENST00000540939	ENST00000337665		ChiTaRS3.1			AK090448	PPARD	chr6	35382834	-	ARHGEF1	chr19	42387266	+
3UTR-intron	ENST00000358506	ENST00000408742		ChiTaRS3.1			BF811868	PPP1CB	chr2	29022698	-	MIR548N	chr2	179369245	-
3UTR-intron	ENST00000296122	ENST00000408742		ChiTaRS3.1			BF811868	PPP1CB	chr2	29022698	-	MIR548N	chr2	179369245	-
3UTR-intron	ENST00000395366	ENST00000408742		ChiTaRS3.1			BF811868	PPP1CB	chr2	29022698	-	MIR548N	chr2	179369245	-
intron-5UTR	ENST00000294868	ENST00000488498		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-3UTR	ENST00000294868	ENST00000368243		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-5UTR	ENST00000287713	ENST00000488498		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-3UTR	ENST00000287713	ENST00000368243		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-5UTR	ENST00000473046	ENST00000488498		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-3UTR	ENST00000473046	ENST00000368243		ChiTaRS3.1			AI003348	NMNAT2	chr1	183218373	+	C1orf61	chr1	156374066	+
intron-intron	ENST00000582151	ENST00000582151		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000582151	ENST00000250124		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000582151	ENST00000396501		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000582151	ENST00000423172		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000250124	ENST00000582151		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000250124	ENST00000250124		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000250124	ENST00000396501		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000250124	ENST00000423172		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000396501	ENST00000582151		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000396501	ENST00000250124		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000396501	ENST00000396501		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
3UTR-intron	ENST00000396501	ENST00000423172		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000423172	ENST00000582151		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000423172	ENST00000250124		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000423172	ENST00000396501		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000423172	ENST00000423172		ChiTaRS3.1			AF258568	MPDU1	chr17	7491135	+	MPDU1	chr17	7489323	+
intron-intron	ENST00000380252	ENST00000558170		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000409487		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000303660		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000539609		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000493689		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000470879		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000465070		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380252	ENST00000462355		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000558170		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000409487		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000303660		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000539609		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000493689		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000470879		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000465070		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000380259	ENST00000462355		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000558170		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000409487		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000303660		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000539609		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000493689		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000470879		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000465070		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
intron-intron	ENST00000336906	ENST00000462355		ChiTaRS3.1			AK225738	HBG2	chr11	5529319	-	ZEB2	chr2	145222999	+
5CDS-intron	ENST00000372725	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
5CDS-intron	ENST00000372724	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
5CDS-intron	ENST00000287239	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
5CDS-intron	ENST00000372714	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
5CDS-intron	ENST00000372711	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
intron-intron	ENST00000490365	ENST00000290607		ChiTaRS3.1			BP193998	KAT6B	chr10	76788833	+	STARD9	chr15	42918685	-
intron-3CDS	ENST00000215742	ENST00000215742		ChiTaRS3.1			AA426248	THAP7	chr22	21354686	+	THAP7	chr22	21354605	-
intron-3CDS	ENST00000215742	ENST00000399133		ChiTaRS3.1			AA426248	THAP7	chr22	21354686	+	THAP7	chr22	21354605	-
intron-3CDS	ENST00000399133	ENST00000215742		ChiTaRS3.1			AA426248	THAP7	chr22	21354686	+	THAP7	chr22	21354605	-
intron-3CDS	ENST00000399133	ENST00000399133		ChiTaRS3.1			AA426248	THAP7	chr22	21354686	+	THAP7	chr22	21354605	-
intron-3CDS	ENST00000521022	ENST00000521022		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521022	ENST00000416984		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521022	ENST00000521777		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521022	ENST00000397363		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000521022	ENST00000521070		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000416984	ENST00000521022		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000416984	ENST00000416984		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000416984	ENST00000521777		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000416984	ENST00000397363		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000416984	ENST00000521070		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521777	ENST00000521022		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521777	ENST00000416984		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521777	ENST00000521777		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521777	ENST00000397363		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000521777	ENST00000521070		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000397363	ENST00000521022		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000397363	ENST00000416984		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000397363	ENST00000521777		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000397363	ENST00000397363		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000397363	ENST00000521070		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521070	ENST00000521022		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521070	ENST00000416984		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521070	ENST00000521777		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-3CDS	ENST00000521070	ENST00000397363		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000521070	ENST00000521070		ChiTaRS3.1			AA428208	INTS9	chr8	28625494	-	INTS9	chr8	28627527	-
intron-intron	ENST00000245441	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000245441	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000389868	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000389868	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000530997	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000530997	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000382043	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000382043	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000382041	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000382041	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000324330	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000324330	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000453196	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000453196	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000486200	ENST00000261799		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-intron	ENST00000486200	ENST00000523456		ChiTaRS3.1			AY764157	NIN	chr14	51190639	-	PDGFRB	chr5	149505576	-
intron-3CDS	ENST00000413405	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000413405	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000413405	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000414457	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000414457	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000414457	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000446807	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000446807	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000446807	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000423223	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000423223	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000423223	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000445521	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000445521	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000445521	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000455774	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000455774	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000455774	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000430295	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000430295	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000430295	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000608994	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000608994	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000608994	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000609413	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000609413	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000609413	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000537908	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000537908	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000537908	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000427063	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000427063	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000427063	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-3CDS	ENST00000438202	ENST00000216181		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000438202	ENST00000475726		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
intron-intron	ENST00000438202	ENST00000401701		ChiTaRS3.1			AI394628	PTCHD3P1	chr10	29749125	-	MYH9	chr22	36691626	+
5CDS-intron	ENST00000216254	ENST00000337147		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000216254	ENST00000367075		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000216254	ENST00000392177		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000216254	ENST00000476189		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000396512	ENST00000337147		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000396512	ENST00000367075		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000396512	ENST00000392177		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
5CDS-intron	ENST00000396512	ENST00000476189		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
intron-intron	ENST00000466237	ENST00000337147		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
intron-intron	ENST00000466237	ENST00000367075		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
intron-intron	ENST00000466237	ENST00000392177		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
intron-intron	ENST00000466237	ENST00000476189		ChiTaRS3.1			AW379928	ACO2	chr22	41903979	+	EZR	chr6	159236652	-
intron-3UTR	ENST00000446256	ENST00000253408		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000588735		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000435360		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000586793		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000446256	ENST00000591327		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000445061	ENST00000253408		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000588735		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000435360		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000586793		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000445061	ENST00000591327		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000476446	ENST00000253408		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000588735		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000435360		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000586793		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000476446	ENST00000591327		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000348968	ENST00000253408		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000588735		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000435360		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000586793		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000348968	ENST00000591327		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-3UTR	ENST00000457607	ENST00000253408		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000588735		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000435360		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000586793		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
intron-intron	ENST00000457607	ENST00000591327		ChiTaRS3.1			M78148	DHX30	chr3	47870210	+	GFAP	chr17	42983731	+
Frame-shit	ENST00000246151	ENST00000335509		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
5CDS-intron	ENST00000246151	ENST00000550785		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
5CDS-intron	ENST00000246151	ENST00000541517		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
5CDS-intron	ENST00000246151	ENST00000392569		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
5CDS-intron	ENST00000246151	ENST00000546787		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
intron-3CDS	ENST00000374524	ENST00000335509		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
intron-intron	ENST00000374524	ENST00000550785		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
intron-intron	ENST00000374524	ENST00000541517		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
intron-intron	ENST00000374524	ENST00000392569		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
intron-intron	ENST00000374524	ENST00000546787		ChiTaRS3.1			BP281668	PITHD1	chr1	24106401	+	TPCN1	chr12	113659243	+
5CDS-intron	ENST00000430524	ENST00000554546		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000356296		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000557597		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000555238		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000355058		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000359560		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000555394		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000454166		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000544991		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000560335		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000555738		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000559312		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000554521		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000535282		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000556600		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000430524	ENST00000556772		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000554546		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000356296		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000557597		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000555238		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000355058		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000359560		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000555394		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000454166		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000544991		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000560335		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000555738		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000559312		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000554521		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000535282		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000556600		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
3UTR-intron	ENST00000402752	ENST00000556772		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000554546		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000356296		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000557597		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000555238		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000355058		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000359560		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000555394		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000454166		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000544991		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000560335		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000555738		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000559312		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000554521		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000535282		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000556600		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
5CDS-intron	ENST00000331821	ENST00000556772		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000554546		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000356296		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000557597		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000555238		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000355058		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000359560		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000555394		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000454166		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000544991		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000560335		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000555738		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000559312		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000554521		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000535282		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000556600		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000467920	ENST00000556772		ChiTaRS3.1			CD248988	RANBP1	chr22	20114706	+	NUMB	chr14	73824107	+
intron-intron	ENST00000215832	ENST00000347136		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000215832	ENST00000372406		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000215832	ENST00000372410		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000215832	ENST00000415344		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000398822	ENST00000347136		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000398822	ENST00000372406		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000398822	ENST00000372410		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000398822	ENST00000415344		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000544786	ENST00000347136		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000544786	ENST00000372406		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000544786	ENST00000372410		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000544786	ENST00000415344		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000491588	ENST00000347136		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000491588	ENST00000372406		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000491588	ENST00000372410		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
intron-intron	ENST00000491588	ENST00000415344		ChiTaRS3.1			BF330168	MAPK1	chr22	22214302	+	GPR107	chr9	132893836	-
5CDS-intron	ENST00000409731	ENST00000409731		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409731	ENST00000345517		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409731	ENST00000409918		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409731	ENST00000409624		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000345517	ENST00000409731		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000345517	ENST00000345517		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000345517	ENST00000409918		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000345517	ENST00000409624		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
intron-intron	ENST00000409918	ENST00000409731		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
intron-intron	ENST00000409918	ENST00000345517		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
intron-intron	ENST00000409918	ENST00000409918		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
intron-intron	ENST00000409918	ENST00000409624		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409624	ENST00000409731		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409624	ENST00000345517		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409624	ENST00000409918		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
5CDS-intron	ENST00000409624	ENST00000409624		ChiTaRS3.1			T60048	ACTG2	chr2	74143821	+	ACTG2	chr2	74129591	+
3UTR-intron	ENST00000359653	ENST00000400590		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000320220		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000382466		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000542645		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000415724		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000422251		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
3UTR-intron	ENST00000359653	ENST00000494731		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000400590		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000320220		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000382466		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000542645		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000415724		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000422251		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-intron	ENST00000471421	ENST00000494731		ChiTaRS3.1			AA948568	ZRANB1	chr10	126674861	-	ZDHHC20	chr13	21949488	+
intron-3CDS	ENST00000306125	ENST00000306125		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000306125	ENST00000414533		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000306125	ENST00000470225		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000306125	ENST00000420147		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000414533	ENST00000306125		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000414533	ENST00000414533		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000414533	ENST00000470225		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000414533	ENST00000420147		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000470225	ENST00000306125		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000470225	ENST00000414533		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000470225	ENST00000470225		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000470225	ENST00000420147		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000420147	ENST00000306125		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-3CDS	ENST00000420147	ENST00000414533		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000420147	ENST00000470225		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-5UTR	ENST00000420147	ENST00000420147		ChiTaRS3.1			BQ330018	QARS	chr3	49137674	+	QARS	chr3	49139284	-
intron-intron	ENST00000440491	ENST00000440491		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000440491	ENST00000338347		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000440491	ENST00000468645		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000440491	ENST00000281815		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000338347	ENST00000440491		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000338347	ENST00000338347		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000338347	ENST00000468645		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000338347	ENST00000281815		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000468645	ENST00000440491		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000468645	ENST00000338347		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000468645	ENST00000468645		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000468645	ENST00000281815		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000281815	ENST00000440491		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000281815	ENST00000338347		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000281815	ENST00000468645		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-intron	ENST00000281815	ENST00000281815		ChiTaRS3.1			BC071648	NBPF9	chr1	144676874	-	NBPF9	chr1	144326030	+
intron-3CDS	ENST00000390237	ENST00000334274		ChiTaRS3.1			BF878078	IGKC	chr2	89156887	+	TCP11L1	chr11	33087519	+
intron-intron	ENST00000390237	ENST00000530171		ChiTaRS3.1			BF878078	IGKC	chr2	89156887	+	TCP11L1	chr11	33087519	+
intron-intron	ENST00000390237	ENST00000432887		ChiTaRS3.1			BF878078	IGKC	chr2	89156887	+	TCP11L1	chr11	33087519	+
intron-intron	ENST00000390237	ENST00000531632		ChiTaRS3.1			BF878078	IGKC	chr2	89156887	+	TCP11L1	chr11	33087519	+
intron-intron	ENST00000390237	ENST00000324357		ChiTaRS3.1			BF878078	IGKC	chr2	89156887	+	TCP11L1	chr11	33087519	+
intron-intron	ENST00000263666	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000263666	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466780	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000308537	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000462146	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000535920	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000479530	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000263666		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000466780		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000308537		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000462146		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000535920		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000479530		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000466348	ENST00000466348		ChiTaRS3.1			BI033898	PDZRN3	chr3	73570431	+	PDZRN3	chr3	73569050	-
intron-intron	ENST00000608999	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000608999	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000608999	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000336894	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000336894	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000336894	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000480184	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000480184	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000480184	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000356764	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000356764	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000356764	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000290419	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000290419	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000290419	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000391959	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000391959	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000391959	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000367270	ENST00000369026		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000367270	ENST00000464132		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000367270	ENST00000307940		ChiTaRS3.1			BQ012814	PPP1R12B	chr1	202536237	-	MCL1	chr1	150547032	+
intron-intron	ENST00000447054	ENST00000344691		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000325074		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000437180		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000300305		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000399240		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000486278		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000494829		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000447054	ENST00000358356		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000344691		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000325074		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000437180		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000300305		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000399240		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000486278		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000494829		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000265022	ENST00000358356		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000344691		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000325074		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000437180		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000300305		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000399240		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000486278		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000494829		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000344484	ENST00000358356		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000344691		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000325074		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000437180		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000300305		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000399240		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000486278		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000494829		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000382164	ENST00000358356		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000344691		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000325074		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000437180		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000300305		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000399240		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000486278		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000494829		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000544847	ENST00000358356		ChiTaRS3.1			BI020438	DGKG	chr3	185905959	-	RUNX1	chr21	36289775	-
intron-intron	ENST00000379145	ENST00000586725		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000269195		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000591081		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000537549		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000586725		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000269195		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000591081		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000537549		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000586725		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000269195		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000591081		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000537549		ChiTaRS3.1			AI952718	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000434581	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000434581	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000434581	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000434581	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000434581	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000434581	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000334667	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000519784	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000523073	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000521229	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000434581		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000334667		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000519784		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000523073		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000521229		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-intron	ENST00000522576	ENST00000522576		ChiTaRS3.1			BF380248	TMEM68	chr8	56661994	-	TMEM68	chr8	56661881	+
intron-3UTR	ENST00000376861	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000376861	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000334668	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000334668	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000259951	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000259951	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000440587	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000440587	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000434407	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000434407	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000475996	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000475996	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000342322	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000342322	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000552082	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000552082	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000551026	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000551026	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000383516	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000383516	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000383515	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000383515	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000496199	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000496199	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000422711	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000422711	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000551832	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000551832	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000549067	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000549067	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000428296	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000428296	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000420067	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000420067	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000485297	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000485297	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000422439	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000422439	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000490874	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000490874	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000383626	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000383626	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000550932	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000550932	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000547132	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000547132	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000383627	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000383627	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000359076	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000359076	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000489167	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000489167	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000435058	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000435058	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000551780	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000551780	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000551347	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000551347	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000445657	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000445657	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000440590	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000440590	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000490259	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000490259	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000444891	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000444891	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000549422	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000549422	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000552880	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000552880	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000549254	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000549254	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000430472	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000430472	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000376848	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000376848	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-3UTR	ENST00000463731	ENST00000392621		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000463731	ENST00000314401		ChiTaRS3.1			DB314758	HLA-F	chr6	1295330	-	CD300LB	chr17	72517982	+
intron-intron	ENST00000582151	ENST00000424789		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
intron-intron	ENST00000582151	ENST00000389520		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
3UTR-intron	ENST00000250124	ENST00000424789		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
3UTR-intron	ENST00000250124	ENST00000389520		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
3UTR-intron	ENST00000396501	ENST00000424789		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
3UTR-intron	ENST00000396501	ENST00000389520		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
intron-intron	ENST00000423172	ENST00000424789		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
intron-intron	ENST00000423172	ENST00000389520		ChiTaRS3.1			BM988998	MPDU1	chr17	7491075	-	TANC2	chr17	61477591	-
intron-3UTR	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA516228	IGKC	chr2	89156688	-	IGKC	chr2	89156758	+
intron-intron	ENST00000321169	ENST00000347869		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000321169	ENST00000469838		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000321169	ENST00000441812		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000435217	ENST00000347869		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000435217	ENST00000469838		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000435217	ENST00000441812		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000451445	ENST00000347869		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000451445	ENST00000469838		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000451445	ENST00000441812		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000456194	ENST00000347869		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000456194	ENST00000469838		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000456194	ENST00000441812		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000457447	ENST00000347869		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000457447	ENST00000469838		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000457447	ENST00000441812		ChiTaRS3.1			AW269808	HACL1	chr3	15601872	-	RBM5	chr3	50154951	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AA714618	IGHG1	chr14	106320770	+	IGHG1	chr14	106320718	-
intron-3UTR	ENST00000353487	ENST00000353487		ChiTaRS3.1			BF361358	SPPL3	chr12	121204133	+	SPPL3	chr12	121202555	+
intron-intron	ENST00000535891	ENST00000535891		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000535891	ENST00000258749		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000535891	ENST00000431169		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000535891	ENST00000538464		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000535891	ENST00000491444		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000258749	ENST00000535891		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000258749	ENST00000258749		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000258749	ENST00000431169		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000258749	ENST00000538464		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000258749	ENST00000491444		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000431169	ENST00000535891		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000431169	ENST00000258749		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000431169	ENST00000431169		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000431169	ENST00000538464		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000431169	ENST00000491444		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000538464	ENST00000535891		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000538464	ENST00000258749		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000538464	ENST00000431169		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000538464	ENST00000538464		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000538464	ENST00000491444		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000491444	ENST00000535891		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000491444	ENST00000258749		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000491444	ENST00000431169		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000491444	ENST00000538464		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
intron-intron	ENST00000491444	ENST00000491444		ChiTaRS3.1			BF895418	AOAH	chr7	36647170	+	AOAH	chr7	36646815	-
Frame-shit	ENST00000417172	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000417172	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361388	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000422748	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361675	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000361901	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000393118	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000495522	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000424922	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
Frame-shit	ENST00000543443	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
5CDS-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000417172		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000361388		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000422748		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000361675		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000361901		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000393118		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000495522		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000424922		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-3CDS	ENST00000466704	ENST00000543443		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			DW442598	CALD1	chr7	134618096	+	CALD1	chr7	134617869	+
intron-intron	ENST00000360319	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000360319	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000360319	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000360319	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000422373	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000422373	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000422373	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000422373	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369850	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369850	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369850	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369850	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369856	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369856	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369856	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000369856	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000344736	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000344736	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000344736	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000344736	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000498491	ENST00000334126		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000498491	ENST00000313663		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000498491	ENST00000542452		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000498491	ENST00000539061		ChiTaRS3.1			BF594578	FLNA	chrX	153577110	+	C2CD3	chr11	73760382	+
intron-intron	ENST00000371018	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371018	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371018	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371018	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000355977	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000355977	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000355977	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-3UTR	ENST00000357692	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-3UTR	ENST00000357692	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000357692	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000401041	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000401041	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401041	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371016	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371016	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371016	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371014	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371014	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371014	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371012	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000371012	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000371012	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000401042	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000401042	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000401042	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-3UTR	ENST00000355356	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-3UTR	ENST00000355356	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-intron	ENST00000355356	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000371018		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000355977		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000479067	ENST00000357692		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000401041		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000371016		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000371014		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000371012		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000401042		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-3UTR	ENST00000479067	ENST00000355356		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
intron-intron	ENST00000479067	ENST00000479067		ChiTaRS3.1			BE165998	MIER1	chr1	67452054	+	MIER1	chr1	67451969	-
3UTR-3CDS	ENST00000371743	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000371743	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000450535	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000450535	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000441722	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000441722	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000417721	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000417721	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-3CDS	ENST00000458653	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-5UTR	ENST00000458653	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000326677	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000326677	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-3CDS	ENST00000428008	ENST00000599539		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000339471		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000251453		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
3UTR-5UTR	ENST00000428008	ENST00000601655		ChiTaRS3.1			BQ218778	ZFAS1	chr20	47895191	-	RPS16	chr19	39926556	-
intron-3UTR	ENST00000345843	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000345843	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000342295	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000342295	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000361572	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000361572	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000348160	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000348160	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000355476	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000355476	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000511401	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000511401	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000507561	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000507561	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000504907	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000504907	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-3UTR	ENST00000342320	ENST00000302418		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
intron-intron	ENST00000342320	ENST00000493889		ChiTaRS3.1			AA644218	RBPJ	chr4	26356834	-	KIF5B	chr10	32298501	-
Frame-shit	ENST00000304636	ENST00000253680		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
Frame-shit	ENST00000304636	ENST00000397372		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
Frame-shit	ENST00000304636	ENST00000593154		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
In-frame	ENST00000304636	ENST00000588246		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
Frame-shit	ENST00000317840	ENST00000253680		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
Frame-shit	ENST00000317840	ENST00000397372		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
Frame-shit	ENST00000317840	ENST00000593154		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
In-frame	ENST00000317840	ENST00000588246		ChiTaRS3.1			BF876228	COL3A1	chr2	189873659	-	HSH2D	chr19	16268348	+
3UTR-3UTR	ENST00000514641	ENST00000514641		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000514641	ENST00000545620		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000514641	ENST00000545279		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545620	ENST00000514641		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545620	ENST00000545620		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545620	ENST00000545279		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545279	ENST00000514641		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545279	ENST00000545620		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
3UTR-3UTR	ENST00000545279	ENST00000545279		ChiTaRS3.1			BF435208	SMAD5	chr5	135518184	-	SMAD5	chr5	135517759	+
intron-intron	ENST00000221214	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000221214	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000221214	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000221214	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000221214	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000221214	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000457542	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000260357	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000456763	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000514566	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000221214		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000457542		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000260357		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000456763		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000514566		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
intron-intron	ENST00000507762	ENST00000507762		ChiTaRS3.1			N31218	MAPKBP1	chr15	42077789	+	MAPKBP1	chr15	42077184	+
3UTR-3CDS	ENST00000578921	ENST00000560217		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3CDS	ENST00000578921	ENST00000044462		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3CDS	ENST00000578921	ENST00000559082		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3CDS	ENST00000578921	ENST00000413382		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-intron	ENST00000578921	ENST00000557929		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3UTR	ENST00000578921	ENST00000558281		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3UTR	ENST00000578921	ENST00000558341		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
3UTR-3UTR	ENST00000578921	ENST00000558094		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3CDS	ENST00000577284	ENST00000560217		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3CDS	ENST00000577284	ENST00000044462		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3CDS	ENST00000577284	ENST00000559082		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3CDS	ENST00000577284	ENST00000413382		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-intron	ENST00000577284	ENST00000557929		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3UTR	ENST00000577284	ENST00000558281		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3UTR	ENST00000577284	ENST00000558341		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-3UTR	ENST00000577284	ENST00000558094		ChiTaRS3.1			AW149658	RAB31	chr18	9862275	-	PSMA4	chr15	78841164	+
intron-intron	ENST00000339788	ENST00000593711		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000339788	ENST00000221722		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000339788	ENST00000391708		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000339788	ENST00000601070		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000339788	ENST00000599935		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000339788	ENST00000593931		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000593711		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000221722		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000391708		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000601070		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000599935		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000320816	ENST00000593931		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000593711		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000221722		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000391708		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000601070		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000599935		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000545653	ENST00000593931		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000593711		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000221722		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000391708		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000601070		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000599935		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000509337	ENST00000593931		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000593711		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000221722		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000391708		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000601070		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000599935		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
intron-intron	ENST00000512525	ENST00000593931		ChiTaRS3.1			BF996758	DAB2	chr5	39403305	+	ZIM2	chr19	57327577	+
3UTR-intron	ENST00000326648	ENST00000306156		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
3UTR-intron	ENST00000326648	ENST00000467135		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
3UTR-intron	ENST00000326648	ENST00000394874		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000416172	ENST00000306156		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000416172	ENST00000467135		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000416172	ENST00000394874		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000559364	ENST00000306156		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000559364	ENST00000467135		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
intron-intron	ENST00000559364	ENST00000394874		ChiTaRS3.1			BF858898	ZNF609	chr15	64976510	+	PRKCE	chr2	46165737	-
5UTR-3CDS	ENST00000413393	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
5UTR-3CDS	ENST00000413393	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
5UTR-3CDS	ENST00000413393	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
5UTR-intron	ENST00000413393	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
Frame-shit	ENST00000436190	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
Frame-shit	ENST00000436190	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
Frame-shit	ENST00000436190	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
5CDS-intron	ENST00000436190	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000300249	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000300249	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000300249	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000300249	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000538170	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000538170	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000538170	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000538170	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000588910	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000588910	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000588910	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000588910	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000589699	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000589699	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000589699	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000589699	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000590793	ENST00000262995		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000590793	ENST00000262994		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-3CDS	ENST00000590793	ENST00000505913		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000590793	ENST00000515388		ChiTaRS3.1			DA240048	MAPRE2	chr18	32585517	+	GAB1	chr4	144354642	+
intron-intron	ENST00000372890	ENST00000263277		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000372890	ENST00000538399		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000372890	ENST00000540884		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000546104	ENST00000263277		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000546104	ENST00000538399		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000546104	ENST00000540884		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000460320	ENST00000263277		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000460320	ENST00000538399		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
intron-intron	ENST00000460320	ENST00000540884		ChiTaRS3.1			AK130008	TRUB2	chr9	131084189	-	EHD2	chr19	48225937	+
3UTR-3CDS	ENST00000526589	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-3CDS	ENST00000526589	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
3UTR-intron	ENST00000526589	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000527974	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000527974	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000352231	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000352231	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000341872	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000341872	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000450372	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000450372	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000366584	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000366584	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000416919	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000416919	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000323938	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000323938	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000526634	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000526634	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000375664		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000375646		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000347934		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000354911		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000525042	ENST00000428935		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-intron	ENST00000525042	ENST00000532233		ChiTaRS3.1			BE082698	LGALS8	chr1	236714485	-	WAC	chr10	28897201	-
intron-3CDS	ENST00000462833	ENST00000462833		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000462833	ENST00000491190		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000462833	ENST00000309879		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-intron	ENST00000462833	ENST00000470367		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000491190	ENST00000462833		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000491190	ENST00000491190		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000491190	ENST00000309879		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-intron	ENST00000491190	ENST00000470367		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000309879	ENST00000462833		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000309879	ENST00000491190		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000309879	ENST00000309879		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-intron	ENST00000309879	ENST00000470367		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000470367	ENST00000462833		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000470367	ENST00000491190		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-3CDS	ENST00000470367	ENST00000309879		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-intron	ENST00000470367	ENST00000470367		ChiTaRS3.1			DA952878	ADCY5	chr3	123016332	-	ADCY5	chr3	123019119	-
intron-intron	ENST00000316399	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000316399		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000396356		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000352083		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000528252		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000527619		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000528429		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000533658		ChiTaRS3.1			H47728	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000409947	ENST00000484532		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-3UTR	ENST00000409947	ENST00000234875		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-intron	ENST00000409947	ENST00000497965		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-intron	ENST00000344908	ENST00000484532		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-3UTR	ENST00000344908	ENST00000234875		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-intron	ENST00000344908	ENST00000497965		ChiTaRS3.1			BU858788	MAP3K2	chr2	128062363	-	RPL22	chr1	6246465	-
intron-intron	ENST00000369209	ENST00000369209		ChiTaRS3.1			BF957608	HSPA12A	chr10	118444884	+	HSPA12A	chr10	118443028	+
intron-intron	ENST00000460680	ENST00000556818		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000460680	ENST00000554015		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000460680	ENST00000394712		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000460680	ENST00000358738		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000296288	ENST00000556818		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000296288	ENST00000554015		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000296288	ENST00000394712		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
intron-intron	ENST00000296288	ENST00000358738		ChiTaRS3.1			BF935978	BAP1	chr3	52443802	+	ZBTB1	chr14	64982504	+
5CDS-intron	ENST00000453919	ENST00000440909		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000448921		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000437397		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-intron	ENST00000453919	ENST00000355814		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000393087		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000393088		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000404814		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000449399		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-intron	ENST00000453919	ENST00000402629		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000453919	ENST00000555289		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-intron	ENST00000456984	ENST00000440909		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000448921		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000437397		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-intron	ENST00000456984	ENST00000355814		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000393087		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000393088		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000404814		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000449399		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-intron	ENST00000456984	ENST00000402629		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
5CDS-5UTR	ENST00000456984	ENST00000555289		ChiTaRS3.1			AF130068	AGAP9	chr10	48215940	-	SERPINA1	chr14	94854938	-
intron-3UTR	ENST00000219478	ENST00000245838		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000355725		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000491737		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000497887		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-3UTR	ENST00000591026	ENST00000245838		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000355725		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000491737		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000497887		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-3UTR	ENST00000545009	ENST00000245838		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000355725		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000491737		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000497887		ChiTaRS3.1			BF156048	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000255409	ENST00000250160		ChiTaRS3.1			AI471078	CHI3L1	chr1	203148122	+	WISP1	chr8	134205543	+
intron-intron	ENST00000255409	ENST00000519433		ChiTaRS3.1			AI471078	CHI3L1	chr1	203148122	+	WISP1	chr8	134205543	+
intron-intron	ENST00000255409	ENST00000377863		ChiTaRS3.1			AI471078	CHI3L1	chr1	203148122	+	WISP1	chr8	134205543	+
intron-intron	ENST00000255409	ENST00000517423		ChiTaRS3.1			AI471078	CHI3L1	chr1	203148122	+	WISP1	chr8	134205543	+
intron-intron	ENST00000255409	ENST00000220856		ChiTaRS3.1			AI471078	CHI3L1	chr1	203148122	+	WISP1	chr8	134205543	+
intron-intron	ENST00000156626	ENST00000156626		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000156626	ENST00000590878		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000156626	ENST00000589992		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000590878	ENST00000156626		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000590878	ENST00000590878		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000590878	ENST00000589992		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000589992	ENST00000156626		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000589992	ENST00000590878		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000589992	ENST00000589992		ChiTaRS3.1			CV336378	ST6GALNAC1	chr17	74636257	-	ST6GALNAC1	chr17	74636419	+
intron-intron	ENST00000395795	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395795	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395795	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000374429	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000374429	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000374429	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395793	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395793	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395793	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
5CDS-intron	ENST00000374426	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
5CDS-intron	ENST00000374426	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
5CDS-intron	ENST00000374426	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000343575	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000343575	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000343575	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395794	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395794	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000395794	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000496375	ENST00000519049		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000496375	ENST00000523211		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000496375	ENST00000328472		ChiTaRS3.1			DQ345518	CXCL12	chr10	44871315	-	NKAIN3	chr8	63775881	-
intron-intron	ENST00000466830	ENST00000421797		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000466830	ENST00000429546		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-3UTR	ENST00000466830	ENST00000352689		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000466830	ENST00000498778		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000423894	ENST00000421797		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000423894	ENST00000429546		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-3UTR	ENST00000423894	ENST00000352689		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000423894	ENST00000498778		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000469102	ENST00000421797		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000469102	ENST00000429546		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-3UTR	ENST00000469102	ENST00000352689		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-intron	ENST00000469102	ENST00000498778		ChiTaRS3.1			BP417368	CMC1	chr3	28289699	+	MKLN1	chr7	131177511	+
intron-3CDS	ENST00000543523	ENST00000543523		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543523	ENST00000281172		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543523	ENST00000543612		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543523	ENST00000540613		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543523	ENST00000542903		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000281172	ENST00000543523		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000281172	ENST00000281172		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000281172	ENST00000543612		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000281172	ENST00000540613		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000281172	ENST00000542903		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543612	ENST00000543523		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543612	ENST00000281172		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543612	ENST00000543612		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543612	ENST00000540613		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000543612	ENST00000542903		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000540613	ENST00000543523		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000540613	ENST00000281172		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000540613	ENST00000543612		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000540613	ENST00000540613		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000540613	ENST00000542903		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000542903	ENST00000543523		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000542903	ENST00000281172		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000542903	ENST00000543612		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000542903	ENST00000540613		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000542903	ENST00000542903		ChiTaRS3.1			AW673298	EPS8	chr12	15803785	+	EPS8	chr12	15784490	-
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM748688	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
In-frame	ENST00000221086	ENST00000221086		ChiTaRS3.1			AW409328	MTMR9	chr8	11174267	+	MTMR9	chr8	11172562	-
In-frame	ENST00000221086	ENST00000526292		ChiTaRS3.1			AW409328	MTMR9	chr8	11174267	+	MTMR9	chr8	11172562	-
In-frame	ENST00000526292	ENST00000221086		ChiTaRS3.1			AW409328	MTMR9	chr8	11174267	+	MTMR9	chr8	11172562	-
In-frame	ENST00000526292	ENST00000526292		ChiTaRS3.1			AW409328	MTMR9	chr8	11174267	+	MTMR9	chr8	11172562	-
intron-5UTR	ENST00000293379	ENST00000479665		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000293379	ENST00000295748		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-intron	ENST00000293379	ENST00000334100		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000293379	ENST00000420543		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000293379	ENST00000457172		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000547744	ENST00000479665		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000547744	ENST00000295748		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-intron	ENST00000547744	ENST00000334100		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000547744	ENST00000420543		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-5UTR	ENST00000547744	ENST00000457172		ChiTaRS3.1			AK123678	ITGA5	chr12	54790061	+	AZI2	chr3	28390286	-
intron-intron	ENST00000536363	ENST00000265069		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000536363	ENST00000510369		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000540689	ENST00000265069		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000540689	ENST00000510369		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000601134	ENST00000265069		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000601134	ENST00000510369		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000601629	ENST00000265069		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000601629	ENST00000510369		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000292530	ENST00000265069		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-intron	ENST00000292530	ENST00000510369		ChiTaRS3.1			AW850208	ZNF333	chr19	14818656	-	ZFR	chr5	32424523	-
intron-3CDS	ENST00000249071	ENST00000249071		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000249071	ENST00000406508		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000249071	ENST00000405484		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-intron	ENST00000249071	ENST00000401529		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000406508	ENST00000249071		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000406508	ENST00000406508		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000406508	ENST00000405484		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-intron	ENST00000406508	ENST00000401529		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000405484	ENST00000249071		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000405484	ENST00000406508		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000405484	ENST00000405484		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-intron	ENST00000405484	ENST00000401529		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000401529	ENST00000249071		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000401529	ENST00000406508		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3CDS	ENST00000401529	ENST00000405484		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-intron	ENST00000401529	ENST00000401529		ChiTaRS3.1			AA079558	RAC2	chr22	37628883	+	RAC2	chr22	37627394	-
intron-3UTR	ENST00000400794	ENST00000400794		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000400794	ENST00000361054		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000400794	ENST00000369962		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000400794	ENST00000369965		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000400794	ENST00000357672		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000361054	ENST00000400794		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000361054	ENST00000361054		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000361054	ENST00000369962		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000361054	ENST00000369965		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000361054	ENST00000357672		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369962	ENST00000400794		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369962	ENST00000361054		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369962	ENST00000369962		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369962	ENST00000369965		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369962	ENST00000357672		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369965	ENST00000400794		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369965	ENST00000361054		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369965	ENST00000369962		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369965	ENST00000369965		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000369965	ENST00000357672		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000357672	ENST00000400794		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000357672	ENST00000361054		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000357672	ENST00000369962		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000357672	ENST00000369965		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
intron-3UTR	ENST00000357672	ENST00000357672		ChiTaRS3.1			BE702568	WDR47	chr1	109547254	+	WDR47	chr1	109513973	+
5CDS-intron	ENST00000301740	ENST00000254958		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
5CDS-intron	ENST00000301740	ENST00000423891		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
5CDS-intron	ENST00000301740	ENST00000488480		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
intron-intron	ENST00000574593	ENST00000254958		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
intron-intron	ENST00000574593	ENST00000423891		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
intron-intron	ENST00000574593	ENST00000488480		ChiTaRS3.1			BF873118	SRRM2	chr16	2813257	-	JAG1	chr20	10624534	+
5UTR-intron	ENST00000296577	ENST00000508784		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
5UTR-intron	ENST00000296577	ENST00000513320		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
5UTR-intron	ENST00000296577	ENST00000379448		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
5UTR-intron	ENST00000296577	ENST00000511534		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
3UTR-intron	ENST00000502803	ENST00000508784		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
3UTR-intron	ENST00000502803	ENST00000513320		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
3UTR-intron	ENST00000502803	ENST00000379448		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
3UTR-intron	ENST00000502803	ENST00000511534		ChiTaRS3.1			DA769928	ABCE1	chr4	146019571	+	ZNF827	chr4	146813584	-
3UTR-3CDS	ENST00000359246	ENST00000335221		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000359246	ENST00000321892		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000359246	ENST00000306378		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000359246	ENST00000424123		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-intron	ENST00000359246	ENST00000577770		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000375376	ENST00000335221		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000375376	ENST00000321892		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000375376	ENST00000306378		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-3CDS	ENST00000375376	ENST00000424123		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
3UTR-intron	ENST00000375376	ENST00000577770		ChiTaRS3.1			BF090778	PHF2	chr9	96441454	-	BPTF	chr17	65908075	+
intron-intron	ENST00000374140	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374140	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374140	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374140	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374140	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000350696	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000350696	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000350696	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000350696	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000350696	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000317613	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000317613	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000317613	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000317613	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000317613	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000343817	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000343817	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000343817	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000343817	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000343817	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000394646	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000394646	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000394646	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000394646	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000394646	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374136	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374136	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374136	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374136	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374136	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462143	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462143	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462143	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462143	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462143	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000463806	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000463806	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000463806	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000463806	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000463806	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000342620	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000342620	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000342620	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000342620	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000342620	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374134	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374134	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374134	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374134	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000374134	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462403	ENST00000409236		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462403	ENST00000356421		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462403	ENST00000317233		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462403	ENST00000409579		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000462403	ENST00000483600		ChiTaRS3.1			BG013798	RGS3	chr9	116310626	-	AFF3	chr2	100547750	+
intron-intron	ENST00000300954	ENST00000533436		ChiTaRS3.1			T10978	PCSK4	chr19	1488521	-	P2RX3	chr11	57107719	+
intron-intron	ENST00000300954	ENST00000263314		ChiTaRS3.1			T10978	PCSK4	chr19	1488521	-	P2RX3	chr11	57107719	+
intron-intron	ENST00000587784	ENST00000533436		ChiTaRS3.1			T10978	PCSK4	chr19	1488521	-	P2RX3	chr11	57107719	+
intron-intron	ENST00000587784	ENST00000263314		ChiTaRS3.1			T10978	PCSK4	chr19	1488521	-	P2RX3	chr11	57107719	+
intron-intron	ENST00000369005	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369005	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000513429	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515273	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000515603	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000453444	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000358010	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000334433	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369001	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369000	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000360561	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000368999	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000369004	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000260733	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000369005		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000513429		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000515273		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000515603		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000453444		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000358010		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000334433		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000369001		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000369000		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000360561		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000368999		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000369004		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000260733		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000493951	ENST00000493951		ChiTaRS3.1			CV413318	TACC2	chr10	124003761	+	TACC2	chr10	124003190	-
intron-intron	ENST00000314100	ENST00000314100		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000314100	ENST00000481247		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000314100	ENST00000419706		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000314100	ENST00000408958		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000314100	ENST00000403056		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000481247	ENST00000314100		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000481247	ENST00000481247		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000481247	ENST00000419706		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000481247	ENST00000408958		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000481247	ENST00000403056		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000419706	ENST00000314100		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000419706	ENST00000481247		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000419706	ENST00000419706		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000419706	ENST00000408958		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000419706	ENST00000403056		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000408958	ENST00000314100		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000408958	ENST00000481247		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000408958	ENST00000419706		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000408958	ENST00000408958		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000408958	ENST00000403056		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000403056	ENST00000314100		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000403056	ENST00000481247		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000403056	ENST00000419706		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000403056	ENST00000408958		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-intron	ENST00000403056	ENST00000403056		ChiTaRS3.1			CV406868	BTBD9	chr6	38404710	-	BTBD9	chr6	38404913	+
intron-3CDS	ENST00000394609	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394609	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394609	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000405240	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000405240	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357376	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357376	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000317610	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000317610	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000357732	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000357732	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000337526	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000337526	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000394611	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000394611	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000404909	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000404909	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000486085	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000486085	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000354474	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000354474	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394609		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000405240		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357376		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000317610		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000357732		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000337526		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000394611		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-3CDS	ENST00000402434	ENST00000404909		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000486085		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000354474		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-5UTR	ENST00000402434	ENST00000402434		ChiTaRS3.1			AA180908	RTN4	chr2	55201877	+	RTN4	chr2	55200750	-
intron-intron	ENST00000397338	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000397338	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000282512	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000381937	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000511613	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000506945	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000374825		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000496118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000580234		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000374831		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000395289		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000443797		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000395287		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000449085		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000438194		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000466744		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000383108		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000547895		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000549843		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000442863		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000552513		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000442219		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000498329		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000488549		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000425201		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000399529		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000399528		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000550142		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000548837		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000399527		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000549236		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000482105		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000414731		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000449118		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000550598		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000479973		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000546777		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000450320		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000547286		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000552587		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000549126		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000553146		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000448067		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000436979		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
intron-intron	ENST00000514504	ENST00000466208		ChiTaRS3.1			AW891518	NADK2	chr5	36218418	+	BRD2	chr6	4422743	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BU680148	MALAT1	chr11	65266756	-	MALAT1	chr11	65266572	+
intron-3CDS	ENST00000326739	ENST00000326739		ChiTaRS3.1			BU675368	IMPDH2	chr3	49061967	+	IMPDH2	chr3	49062452	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF919368	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000401084	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000401084	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264203	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375142	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000433834	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000264202	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000482808	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000401084		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000264203		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000375142		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000433834		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000264202		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000482808		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-intron	ENST00000375144	ENST00000375144		ChiTaRS3.1			BX643958	CAPZB	chr1	19669268	+	CAPZB	chr1	19669878	-
intron-5UTR	ENST00000508802	ENST00000471694		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-3UTR	ENST00000508802	ENST00000355354		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-intron	ENST00000508802	ENST00000361309		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-5UTR	ENST00000261439	ENST00000471694		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-3UTR	ENST00000261439	ENST00000355354		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-intron	ENST00000261439	ENST00000361309		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-5UTR	ENST00000402522	ENST00000471694		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-3UTR	ENST00000402522	ENST00000355354		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-intron	ENST00000402522	ENST00000361309		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-5UTR	ENST00000407365	ENST00000471694		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-3UTR	ENST00000407365	ENST00000355354		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-intron	ENST00000407365	ENST00000361309		ChiTaRS3.1			BF996478	TBC1D1	chr4	38084601	+	CD47	chr3	107763727	-
intron-intron	ENST00000254323	ENST00000378641		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000254323	ENST00000338037		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000254323	ENST00000378637		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000254323	ENST00000494924		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000440752	ENST00000378641		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000440752	ENST00000338037		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000440752	ENST00000378637		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000440752	ENST00000494924		ChiTaRS3.1			BF954088	ZSWIM4	chr19	13929041	-	PLCB1	chr20	8226562	-
intron-intron	ENST00000523629	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000523629	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000523629	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000523629	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000523629	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000396218	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000396218	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000396218	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000396218	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000396218	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000265814	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000265814	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000265814	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000265814	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000265814	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000360348	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000360348	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000360348	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000360348	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000360348	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000436581	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000436581	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000436581	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000436581	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000436581	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000520724	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000520724	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000520724	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000520724	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000520724	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000518844	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000518844	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000518844	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000518844	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000518844	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000522163	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000522163	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000522163	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000522163	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000522163	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000422361	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000422361	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000422361	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000422361	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000422361	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000521553	ENST00000546097		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000521553	ENST00000367481		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000521553	ENST00000367480		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000521553	ENST00000321680		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000521553	ENST00000179882		ChiTaRS3.1			BX506268	RUNX1T1	chr8	92999090	-	STXBP5	chr6	147674185	+
intron-intron	ENST00000298569	ENST00000595618		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000298569	ENST00000594824		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000298569	ENST00000397274		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000298569	ENST00000593411		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393728	ENST00000595618		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393728	ENST00000594824		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393728	ENST00000397274		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393728	ENST00000593411		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393725	ENST00000595618		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393725	ENST00000594824		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393725	ENST00000397274		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000393725	ENST00000593411		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000510164	ENST00000595618		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000510164	ENST00000594824		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000510164	ENST00000397274		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000510164	ENST00000593411		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000533553	ENST00000595618		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000533553	ENST00000594824		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000533553	ENST00000397274		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
intron-intron	ENST00000533553	ENST00000593411		ChiTaRS3.1			BF527288	KIAA1191	chr5	175774401	-	MYO9B	chr19	17243205	-
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000538546	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-intron	ENST00000538546	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535623	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-intron	ENST00000535623	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000535011	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-intron	ENST00000535011	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000542996	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-intron	ENST00000542996	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-3UTR	ENST00000249364	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
3UTR-intron	ENST00000249364	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000449187	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-intron	ENST00000449187	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3UTR	ENST00000479257	ENST00000449187		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-intron	ENST00000479257	ENST00000479257		ChiTaRS3.1			AA330728	CALU	chr7	128410753	+	CALU	chr7	128410142	+
intron-3CDS	ENST00000332710	ENST00000252050		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000332710	ENST00000354495		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000332710	ENST00000372647		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-intron	ENST00000332710	ENST00000502937		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000329705	ENST00000252050		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000329705	ENST00000354495		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000329705	ENST00000372647		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-intron	ENST00000329705	ENST00000502937		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000359500	ENST00000252050		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000359500	ENST00000354495		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-3CDS	ENST00000359500	ENST00000372647		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
intron-intron	ENST00000359500	ENST00000502937		ChiTaRS3.1			AI131138	TBX1	chr22	19747502	-	CUL9	chr6	43164481	-
3UTR-3CDS	ENST00000367282	ENST00000538966		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-3CDS	ENST00000367282	ENST00000361971		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538543		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538776		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-intron	ENST00000367282	ENST00000538282		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
3UTR-3UTR	ENST00000367282	ENST00000485980		ChiTaRS3.1			AI886978	GPR37L1	chr1	202098509	-	PLXNB3	chrX	153043121	-
5CDS-5UTR	ENST00000453514	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000453514	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000453514	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000453514	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-intron	ENST00000453514	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000453514	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000423041	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000423041	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000423041	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000423041	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-intron	ENST00000423041	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000423041	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000504233	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000504233	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000504233	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000504233	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-intron	ENST00000504233	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000504233	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000428308	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000428308	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000428308	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000428308	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-intron	ENST00000428308	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000428308	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-5UTR	ENST00000502269	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-5UTR	ENST00000502269	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-5UTR	ENST00000502269	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-5UTR	ENST00000502269	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-intron	ENST00000502269	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-5UTR	ENST00000502269	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000296783	ENST00000453514		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000296783	ENST00000423041		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000296783	ENST00000504233		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000296783	ENST00000428308		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-intron	ENST00000296783	ENST00000502269		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
5CDS-5UTR	ENST00000296783	ENST00000296783		ChiTaRS3.1			BE094038	PAPD4	chr5	78919315	+	PAPD4	chr5	78915433	+
intron-intron	ENST00000354725	ENST00000554719		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000354725	ENST00000335750		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000354725	ENST00000557594		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000354725	ENST00000281127		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000354725	ENST00000428277		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000354725	ENST00000556003		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000554719		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000335750		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000557594		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000281127		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000428277		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
intron-intron	ENST00000467238	ENST00000556003		ChiTaRS3.1			BG000348	SND1	chr7	127399110	-	NRXN3	chr14	79376210	+
5CDS-intron	ENST00000380550	ENST00000441210		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000457433		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000271064		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380550	ENST00000537531		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000380550	ENST00000481165		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000441210		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000457433		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000271064		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-intron	ENST00000398395	ENST00000537531		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-3UTR	ENST00000398395	ENST00000481165		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000441210		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000457433		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000271064		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000380567	ENST00000537531		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000380567	ENST00000481165		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000441210		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000457433		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000271064		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-intron	ENST00000340096	ENST00000537531		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
5CDS-3UTR	ENST00000340096	ENST00000481165		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000441210		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000457433		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000271064		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-intron	ENST00000490265	ENST00000537531		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
3UTR-3UTR	ENST00000490265	ENST00000481165		ChiTaRS3.1			AW751638	OFD1	chrX	13779303	-	TINAGL1	chr1	32049425	-
intron-3CDS	ENST00000430710	ENST00000430710		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000430710	ENST00000399982		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000430710	ENST00000557364		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-intron	ENST00000430710	ENST00000555962		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000399982	ENST00000430710		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000399982	ENST00000399982		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000399982	ENST00000557364		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-intron	ENST00000399982	ENST00000555962		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000557364	ENST00000430710		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000557364	ENST00000399982		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000557364	ENST00000557364		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-intron	ENST00000557364	ENST00000555962		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000555962	ENST00000430710		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000555962	ENST00000399982		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-3CDS	ENST00000555962	ENST00000557364		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
intron-intron	ENST00000555962	ENST00000555962		ChiTaRS3.1			AA448938	CHD8	chr14	21859672	-	CHD8	chr14	21860823	-
In-frame	ENST00000262803	ENST00000262803		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
In-frame	ENST00000262803	ENST00000599848		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
5CDS-intron	ENST00000262803	ENST00000600310		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
In-frame	ENST00000599848	ENST00000262803		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
In-frame	ENST00000599848	ENST00000599848		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
5CDS-intron	ENST00000599848	ENST00000600310		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
intron-3CDS	ENST00000600310	ENST00000262803		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
intron-3CDS	ENST00000600310	ENST00000599848		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
intron-intron	ENST00000600310	ENST00000600310		ChiTaRS3.1			CN406978	UPF1	chr19	18976159	-	UPF1	chr19	18976160	+
intron-intron	ENST00000304043	ENST00000579226		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000304043	ENST00000217652		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000304043	ENST00000578611		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000304043	ENST00000585090		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000304043	ENST00000580887		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000304043	ENST00000536605		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506207	ENST00000579226		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000506207	ENST00000217652		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000506207	ENST00000578611		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506207	ENST00000585090		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506207	ENST00000580887		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506207	ENST00000536605		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000508488	ENST00000579226		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000508488	ENST00000217652		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000508488	ENST00000578611		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000508488	ENST00000585090		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000508488	ENST00000580887		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000508488	ENST00000536605		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506908	ENST00000579226		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000506908	ENST00000217652		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000506908	ENST00000578611		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506908	ENST00000585090		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506908	ENST00000580887		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000506908	ENST00000536605		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513012	ENST00000579226		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000513012	ENST00000217652		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000513012	ENST00000578611		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513012	ENST00000585090		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513012	ENST00000580887		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-intron	ENST00000513012	ENST00000536605		ChiTaRS3.1			BC011398	HINT1	chr5	130500937	+	MYL12A	chr18	3247826	+
intron-3CDS	ENST00000545387	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000545387	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000545387	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000545387	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000402551	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000402551	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000402551	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000402551	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000316273	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000316273	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000316273	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000316273	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000597011	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000597011	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000597011	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000597011	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000599246	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000599246	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000599246	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000599246	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000598162	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000598162	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000598162	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000598162	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000601496	ENST00000373953		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000601496	ENST00000440666		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-3CDS	ENST00000601496	ENST00000339411		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000601496	ENST00000482946		ChiTaRS3.1			BF062738	BCAT2	chr19	49298468	+	ZNF76	chr6	35255527	-
intron-intron	ENST00000345097	ENST00000282488		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000282486		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000355460		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000493459		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000324210		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000498502		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000545754		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000357472		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000324196		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000485910		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000463374		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000492948		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000485509		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000345097	ENST00000461436		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000282488		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000282486		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000355460		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000493459		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000324210		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000498502		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000545754		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000357472		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000324196		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000485910		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000463374		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000492948		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000485509		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000261302	ENST00000461436		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000282488		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000282486		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000355460		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000493459		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000324210		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000498502		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000545754		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000357472		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000324196		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000485910		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000463374		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000492948		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000485509		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000557258	ENST00000461436		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000282488		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000282486		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000355460		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000493459		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000324210		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000498502		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000545754		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000357472		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000324196		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000485910		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000463374		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000492948		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000485509		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555353	ENST00000461436		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000282488		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000282486		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000355460		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000493459		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000324210		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000498502		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000545754		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000357472		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000324196		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000485910		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000463374		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000492948		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000485509		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
intron-intron	ENST00000555658	ENST00000461436		ChiTaRS3.1			BG485148	FOXN3	chr14	90079620	-	MBNL1	chr3	152031754	-
3UTR-3CDS	ENST00000346169	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000346169	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000346169	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000346169	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000414031	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000414031	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000414031	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000414031	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000392537	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000392537	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000392537	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000392537	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3CDS	ENST00000382330	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000382330	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000382330	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000382330	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000350481	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000350481	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000350481	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000350481	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3CDS	ENST00000352767	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000352767	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000352767	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000352767	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3CDS	ENST00000427845	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000427845	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000427845	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000427845	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000342981	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000342981	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000342981	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000342981	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000319274	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000319274	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000319274	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000319274	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000424196	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000424196	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000424196	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000424196	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3CDS	ENST00000411531	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000411531	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000411531	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000411531	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3CDS	ENST00000441154	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000441154	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000441154	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-5UTR	ENST00000441154	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000434061	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000434061	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000434061	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000434061	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-3CDS	ENST00000435046	ENST00000302475		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000435046	ENST00000514701		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000435046	ENST00000515367		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
3UTR-5UTR	ENST00000435046	ENST00000408903		ChiTaRS3.1			BQ009628	EIF4G1	chr3	184052945	-	MCC	chr5	112389659	-
intron-3UTR	ENST00000374975	ENST00000374975		ChiTaRS3.1			AW821848	HLA-DRB5	chr6	32485367	+	HLA-DRB5	chr6	32485433	-
3UTR-3UTR	ENST00000369983	ENST00000256682		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000447318		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541959		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541967		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-3UTR	ENST00000476019	ENST00000256682		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000447318		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541959		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541967		ChiTaRS3.1			R85158	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-3CDS	ENST00000341846	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000341846	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000341846	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000341846	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000341846	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000341846	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-3CDS	ENST00000524816	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000524816	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000524816	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000524816	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000524816	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000524816	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-3CDS	ENST00000541857	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000541857	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000541857	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000541857	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000541857	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000541857	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-3CDS	ENST00000525887	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000525887	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000525887	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000525887	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000525887	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000525887	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-3CDS	ENST00000528870	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000528870	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000528870	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000528870	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000528870	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000528870	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-3CDS	ENST00000529044	ENST00000341846		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000529044	ENST00000524816		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000529044	ENST00000541857		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000529044	ENST00000525887		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000529044	ENST00000528870		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000529044	ENST00000529044		ChiTaRS3.1			DB107228	TRIM29	chr11	119982392	-	TRIM29	chr11	120008415	-
intron-intron	ENST00000352131	ENST00000352131		ChiTaRS3.1			CK299368	RFC2	chr7	73661096	+	RFC2	chr7	73654267	+
intron-intron	ENST00000352131	ENST00000055077		ChiTaRS3.1			CK299368	RFC2	chr7	73661096	+	RFC2	chr7	73654267	+
intron-intron	ENST00000055077	ENST00000352131		ChiTaRS3.1			CK299368	RFC2	chr7	73661096	+	RFC2	chr7	73654267	+
intron-intron	ENST00000055077	ENST00000055077		ChiTaRS3.1			CK299368	RFC2	chr7	73661096	+	RFC2	chr7	73654267	+
5CDS-3UTR	ENST00000310144	ENST00000310144		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-intron	ENST00000310144	ENST00000582420		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000310144	ENST00000580864		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000310144	ENST00000375812		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000310144	ENST00000581882		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-3UTR	ENST00000582420	ENST00000310144		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-intron	ENST00000582420	ENST00000582420		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-3UTR	ENST00000582420	ENST00000580864		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-3UTR	ENST00000582420	ENST00000375812		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-3UTR	ENST00000582420	ENST00000581882		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000580864	ENST00000310144		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-intron	ENST00000580864	ENST00000582420		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000580864	ENST00000580864		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000580864	ENST00000375812		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000580864	ENST00000581882		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000375812	ENST00000310144		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-intron	ENST00000375812	ENST00000582420		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000375812	ENST00000580864		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000375812	ENST00000375812		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000375812	ENST00000581882		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000581882	ENST00000310144		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-intron	ENST00000581882	ENST00000582420		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000581882	ENST00000580864		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000581882	ENST00000375812		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
5CDS-3UTR	ENST00000581882	ENST00000581882		ChiTaRS3.1			BI002868	PSMC5	chr17	61909140	+	PSMC5	chr17	61909339	-
intron-intron	ENST00000244769	ENST00000535741		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000244769	ENST00000510413		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000244769	ENST00000503716		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000244769	ENST00000357115		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000244769	ENST00000507224		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000436367	ENST00000535741		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000436367	ENST00000510413		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000436367	ENST00000503716		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000436367	ENST00000357115		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000436367	ENST00000507224		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000467008	ENST00000535741		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000467008	ENST00000510413		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000467008	ENST00000503716		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000467008	ENST00000357115		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-intron	ENST00000467008	ENST00000507224		ChiTaRS3.1			AW889608	ATXN1	chr6	16714735	-	LRBA	chr4	151289156	+
intron-3CDS	ENST00000557943	ENST00000557943		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000557943	ENST00000433983		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000557943	ENST00000560726		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000557943	ENST00000559602		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000557943	ENST00000560816		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000433983	ENST00000557943		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000433983	ENST00000433983		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000433983	ENST00000560726		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000433983	ENST00000559602		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000433983	ENST00000560816		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000560726	ENST00000557943		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000560726	ENST00000433983		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560726	ENST00000560726		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560726	ENST00000559602		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560726	ENST00000560816		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000559602	ENST00000557943		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000559602	ENST00000433983		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000559602	ENST00000560726		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000559602	ENST00000559602		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000559602	ENST00000560816		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000560816	ENST00000557943		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000560816	ENST00000433983		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560816	ENST00000560726		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560816	ENST00000559602		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-intron	ENST00000560816	ENST00000560816		ChiTaRS3.1			CB163238	ETFA	chr15	76588010	+	ETFA	chr15	76585024	-
intron-3CDS	ENST00000449576	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000449576	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000449576	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000449576	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396099	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396099	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396099	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000425416	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000425416	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000425416	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000256720	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000256720	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000256720	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396097	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396097	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396097	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000404113	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000404113	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000404113	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000464517	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000464517	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000464517	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000449576		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000396099		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000425416		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000256720		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000396097		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-3CDS	ENST00000396098	ENST00000404113		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396098	ENST00000464517		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
intron-intron	ENST00000396098	ENST00000396098		ChiTaRS3.1			BF352618	LPIN1	chr2	11959572	+	LPIN1	chr2	11959699	-
3UTR-3CDS	ENST00000157812	ENST00000157812		ChiTaRS3.1			BU608468	PSMC4	chr19	40487235	-	PSMC4	chr19	40487098	+
3UTR-3CDS	ENST00000157812	ENST00000455878		ChiTaRS3.1			BU608468	PSMC4	chr19	40487235	-	PSMC4	chr19	40487098	+
3UTR-3CDS	ENST00000455878	ENST00000157812		ChiTaRS3.1			BU608468	PSMC4	chr19	40487235	-	PSMC4	chr19	40487098	+
3UTR-3CDS	ENST00000455878	ENST00000455878		ChiTaRS3.1			BU608468	PSMC4	chr19	40487235	-	PSMC4	chr19	40487098	+
intron-3CDS	ENST00000377892	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377892	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377892	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377892	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377890	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377890	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377890	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377891	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377891	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377891	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000377889	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000377889	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000377889	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000535296	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000535296	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000535296	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3CDS	ENST00000338663	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-3UTR	ENST00000338663	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
5UTR-5UTR	ENST00000338663	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000538682	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000538682	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000538682	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377892		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377890		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377891		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000377889		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000535296		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3CDS	ENST00000536981	ENST00000338663		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000536981	ENST00000538682		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-5UTR	ENST00000536981	ENST00000536981		ChiTaRS3.1			BF088478	SLC3A2	chr11	62648455	-	SLC3A2	chr11	62652959	-
intron-3UTR	ENST00000527706	ENST00000404535		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-3UTR	ENST00000527706	ENST00000288014		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-intron	ENST00000527706	ENST00000556015		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-intron	ENST00000527706	ENST00000554970		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-3UTR	ENST00000527706	ENST00000554789		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-3UTR	ENST00000321322	ENST00000404535		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-3UTR	ENST00000321322	ENST00000288014		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-intron	ENST00000321322	ENST00000556015		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-intron	ENST00000321322	ENST00000554970		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-3UTR	ENST00000321322	ENST00000554789		ChiTaRS3.1			BF960308	DSCAML1	chr11	117362891	-	THTPA	chr14	24028189	-
intron-intron	ENST00000075120	ENST00000390548		ChiTaRS3.1			DA591678	SLC2A3	chr12	8083995	-	IGHG1	chr14	107095601	-
intron-intron	ENST00000543435	ENST00000390548		ChiTaRS3.1			DA591678	SLC2A3	chr12	8083995	-	IGHG1	chr14	107095601	-
3UTR-3CDS	ENST00000311413	ENST00000311413		ChiTaRS3.1			BU553518	RNF26	chr11	119207154	+	RNF26	chr11	119206249	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266512	FLI1	chr11	128650068	+	EWSR1	chr22	29683677	+
intron-3UTR	ENST00000331006	ENST00000477916		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000331006	ENST00000374555		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000353379	ENST00000477916		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000353379	ENST00000374555		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000505473	ENST00000477916		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000505473	ENST00000374555		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000514965	ENST00000477916		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-3UTR	ENST00000514965	ENST00000374555		ChiTaRS3.1			BI013978	CDK10	chr16	89760234	-	MDS2	chr1	23966229	+
intron-intron	ENST00000381269	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000381269	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000356921	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000357887	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000216568	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000394330	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000528359	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000534137	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533541	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000441740		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000331559		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000561096		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000561293		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000560253		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000558555		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-intron	ENST00000533899	ENST00000559524		ChiTaRS3.1			AL359938	SLC8A3	chr14	70511641	+	MEIS3	chr19	47921881	-
intron-3UTR	ENST00000369146	ENST00000369146		ChiTaRS3.1			BE250288	SV2A	chr1	149875294	-	SV2A	chr1	149876346	-
intron-intron	ENST00000369146	ENST00000369145		ChiTaRS3.1			BE250288	SV2A	chr1	149875294	-	SV2A	chr1	149876346	-
intron-3UTR	ENST00000369145	ENST00000369146		ChiTaRS3.1			BE250288	SV2A	chr1	149875294	-	SV2A	chr1	149876346	-
intron-intron	ENST00000369145	ENST00000369145		ChiTaRS3.1			BE250288	SV2A	chr1	149875294	-	SV2A	chr1	149876346	-
intron-intron	ENST00000374825	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374825	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000496118	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000580234	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000374831	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395289	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000443797	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000395287	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449085	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000438194	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466744	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000383108	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547895	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549843	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442863	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552513	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000442219	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000498329	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000488549	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000425201	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399529	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399528	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550142	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000548837	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000399527	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549236	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000482105	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000414731	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000449118	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000550598	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000479973	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000546777	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000450320	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000547286	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000552587	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000549126	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000553146	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000448067	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000436979	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000374825		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000496118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000580234		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000374831		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000395289		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000443797		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000395287		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000449085		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000438194		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000466744		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000383108		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000547895		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000549843		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000442863		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000552513		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000442219		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000498329		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000488549		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000425201		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000399529		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000399528		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000550142		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000548837		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000399527		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000549236		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000482105		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000414731		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000449118		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000550598		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000479973		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000546777		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000450320		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000547286		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000552587		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000549126		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000553146		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000448067		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000436979		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000466208	ENST00000466208		ChiTaRS3.1			AA379698	BRD2	chr6	4425716	+	BRD2	chr6	4176049	+
intron-intron	ENST00000458659	ENST00000374864		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000458659	ENST00000535650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000458659	ENST00000262650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000458659	ENST00000483727		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000501704	ENST00000374864		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000501704	ENST00000535650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000501704	ENST00000262650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000501704	ENST00000483727		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000261489	ENST00000374864		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000261489	ENST00000535650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000261489	ENST00000262650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000261489	ENST00000483727		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000460842	ENST00000374864		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000460842	ENST00000535650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000460842	ENST00000262650		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-intron	ENST00000460842	ENST00000483727		ChiTaRS3.1			AA781408	TSC22D1	chr13	45009020	+	ITCH	chr20	33081144	+
intron-3CDS	ENST00000261772	ENST00000374316		ChiTaRS3.1			BF762968	AARS	chr16	70289887	+	ITPR3	chr6	33635631	+
intron-3CDS	ENST00000261772	ENST00000605930		ChiTaRS3.1			BF762968	AARS	chr16	70289887	+	ITPR3	chr6	33635631	+
intron-3CDS	ENST00000564359	ENST00000374316		ChiTaRS3.1			BF762968	AARS	chr16	70289887	+	ITPR3	chr6	33635631	+
intron-3CDS	ENST00000564359	ENST00000605930		ChiTaRS3.1			BF762968	AARS	chr16	70289887	+	ITPR3	chr6	33635631	+
5CDS-5UTR	ENST00000525975	ENST00000525975		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000525975	ENST00000379016		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000525975	ENST00000303296		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000525975	ENST00000456517		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-intron	ENST00000525975	ENST00000534262		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000379016	ENST00000525975		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000379016	ENST00000379016		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000379016	ENST00000303296		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000379016	ENST00000456517		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-intron	ENST00000379016	ENST00000534262		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000303296	ENST00000525975		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000303296	ENST00000379016		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000303296	ENST00000303296		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000303296	ENST00000456517		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-intron	ENST00000303296	ENST00000534262		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000456517	ENST00000525975		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000456517	ENST00000379016		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000456517	ENST00000303296		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-5UTR	ENST00000456517	ENST00000456517		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
5CDS-intron	ENST00000456517	ENST00000534262		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
intron-5UTR	ENST00000534262	ENST00000525975		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
intron-5UTR	ENST00000534262	ENST00000379016		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
intron-5UTR	ENST00000534262	ENST00000303296		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
intron-5UTR	ENST00000534262	ENST00000456517		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
intron-intron	ENST00000534262	ENST00000534262		ChiTaRS3.1			AW899798	HIPK3	chr11	33309060	+	HIPK3	chr11	33307956	+
In-frame	ENST00000356239	ENST00000395715		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000356239	ENST00000220888		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000519076		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000520276		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000519674		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000358100	ENST00000395715		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000358100	ENST00000220888		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000519076		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000520276		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000519674		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000359028	ENST00000395715		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000359028	ENST00000220888		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000519076		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000520276		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000519674		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000394564	ENST00000395715		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000394564	ENST00000220888		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000519076		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000520276		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000519674		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000491695	ENST00000395715		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000491695	ENST00000220888		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000519076		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000520276		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000519674		ChiTaRS3.1			AK000948	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000509081	ENST00000361445		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000376838		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000509081	ENST00000495435		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000361445		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000376838		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000264400	ENST00000495435		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000361445		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000376838		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000335927	ENST00000495435		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000361445		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000376838		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000436139	ENST00000495435		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000361445		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000376838		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000514889	ENST00000495435		ChiTaRS3.1			BF845998	RASGEF1B	chr4	82365981	-	MTOR	chr1	11317919	-
intron-intron	ENST00000399180	ENST00000399180		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000399180	ENST00000399179		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000399180	ENST00000358410		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000399179	ENST00000399180		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000399179	ENST00000399179		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000399179	ENST00000358410		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000358410	ENST00000399180		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000358410	ENST00000399179		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-intron	ENST00000358410	ENST00000358410		ChiTaRS3.1			AW378978	DNA2	chr10	70229922	+	DNA2	chr10	70196768	+
intron-3UTR	ENST00000399916	ENST00000399916		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000399916	ENST00000308873		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000399916	ENST00000338888		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000399916	ENST00000540420		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000399916	ENST00000496967		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000308873	ENST00000399916		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000308873	ENST00000308873		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000308873	ENST00000338888		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000308873	ENST00000540420		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000308873	ENST00000496967		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000338888	ENST00000399916		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000338888	ENST00000308873		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000338888	ENST00000338888		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000338888	ENST00000540420		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000338888	ENST00000496967		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000540420	ENST00000399916		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000540420	ENST00000308873		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000540420	ENST00000338888		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000540420	ENST00000540420		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000540420	ENST00000496967		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000496967	ENST00000399916		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000496967	ENST00000308873		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000496967	ENST00000338888		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000496967	ENST00000540420		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-intron	ENST00000496967	ENST00000496967		ChiTaRS3.1			AW167608	RUNX3	chr1	25227615	+	RUNX3	chr1	25226689	+
intron-3UTR	ENST00000393593	ENST00000256951		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-3UTR	ENST00000393593	ENST00000537612		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000393593	ENST00000431267		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000393593	ENST00000544053		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000393593	ENST00000542289		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000393593	ENST00000396301		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-3UTR	ENST00000512020	ENST00000256951		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-3UTR	ENST00000512020	ENST00000537612		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000512020	ENST00000431267		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000512020	ENST00000544053		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000512020	ENST00000542289		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-intron	ENST00000512020	ENST00000396301		ChiTaRS3.1			AI355548	IRF2	chr4	185309119	+	EMP1	chr12	13369520	+
intron-5UTR	ENST00000399161	ENST00000488299		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000399161	ENST00000380843		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000399161	ENST00000380851		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000428368	ENST00000488299		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000428368	ENST00000380843		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000428368	ENST00000380851		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000407844	ENST00000488299		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000407844	ENST00000380843		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000407844	ENST00000380851		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000471668	ENST00000488299		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000471668	ENST00000380843		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-5UTR	ENST00000471668	ENST00000380851		ChiTaRS3.1			BQ366218	MYT1L	chr2	2242110	-	IDH3B	chr20	2640772	-
intron-intron	ENST00000378883	ENST00000378883		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378883	ENST00000378896		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378883	ENST00000378886		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378883	ENST00000265187		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378896	ENST00000378883		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378896	ENST00000378896		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378896	ENST00000378886		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378896	ENST00000265187		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378886	ENST00000378883		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378886	ENST00000378896		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378886	ENST00000378886		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000378886	ENST00000265187		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000265187	ENST00000378883		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000265187	ENST00000378896		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000265187	ENST00000378886		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000265187	ENST00000265187		ChiTaRS3.1			AK160378	MCM8	chr20	5951131	-	MCM8	chr20	5951345	+
intron-intron	ENST00000368323	ENST00000424834		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000382108		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000382095		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000474317		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000399949		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000409126		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368323	ENST00000343003		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000424834		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000382108		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000382095		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000474317		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000399949		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000409126		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000539040	ENST00000343003		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000424834		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000382108		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000382095		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000474317		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000399949		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000409126		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
intron-intron	ENST00000368322	ENST00000343003		ChiTaRS3.1			BX506288	RIT1	chr1	155876313	+	SPATA13	chr13	24772401	+
5CDS-intron	ENST00000327443	ENST00000327892		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000435534		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000330914		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000396389		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000396384		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000421473		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000549614		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000413547		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000419551		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000454620		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000422674		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000548023		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000435546		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000420400		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000453350		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000419792		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000547690		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000436335		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000425136		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000444441		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000422650		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000547695		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000454454		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000412136		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000446385		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000383564		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000551208		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000400531		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000400534		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000400530		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000436628		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000549902		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000437490		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000426754		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000425102		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000327443	ENST00000432462		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000327443	ENST00000549654		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000327443	ENST00000427480		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000327443	ENST00000424734		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000327443	ENST00000420618		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000327892		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000435534		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000330914		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000396389		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000396384		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000421473		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000549614		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000413547		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000419551		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000454620		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000422674		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000548023		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000435546		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000420400		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000453350		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000419792		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000547690		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000436335		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000425136		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000444441		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000422650		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000547695		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000454454		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000412136		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000446385		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000383564		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000551208		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000400531		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000400534		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000400530		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000436628		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000549902		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000437490		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000426754		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000425102		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000426431	ENST00000432462		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-intron	ENST00000426431	ENST00000549654		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000426431	ENST00000427480		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000426431	ENST00000424734		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
5CDS-3UTR	ENST00000426431	ENST00000420618		ChiTaRS3.1			BF902308	SP1	chr12	53777114	-	TUBB	chr6	2025181	+
intron-intron	ENST00000450461	ENST00000389653		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000450461	ENST00000340083		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000450461	ENST00000507039		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000450461	ENST00000512714		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000426999	ENST00000389653		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000426999	ENST00000340083		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000426999	ENST00000507039		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000426999	ENST00000512714		ChiTaRS3.1			L34968	ZRANB2-AS1	chr1	71535019	+	DOK7	chr4	3493997	-
intron-intron	ENST00000378993	ENST00000378993		ChiTaRS3.1			DB359358	IL1RAPL1	chrX	29704923	-	IL1RAPL1	chrX	29714986	-
intron-intron	ENST00000378993	ENST00000302196		ChiTaRS3.1			DB359358	IL1RAPL1	chrX	29704923	-	IL1RAPL1	chrX	29714986	-
intron-intron	ENST00000302196	ENST00000378993		ChiTaRS3.1			DB359358	IL1RAPL1	chrX	29704923	-	IL1RAPL1	chrX	29714986	-
intron-intron	ENST00000302196	ENST00000302196		ChiTaRS3.1			DB359358	IL1RAPL1	chrX	29704923	-	IL1RAPL1	chrX	29714986	-
intron-intron	ENST00000334126	ENST00000479054		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000334126	ENST00000345716		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000334126	ENST00000488380		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000334126	ENST00000420808		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000334126	ENST00000464280		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000313663	ENST00000479054		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000313663	ENST00000345716		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000313663	ENST00000488380		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000313663	ENST00000420808		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000313663	ENST00000464280		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000542452	ENST00000479054		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000542452	ENST00000345716		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000542452	ENST00000488380		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000542452	ENST00000420808		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000542452	ENST00000464280		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000539061	ENST00000479054		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000539061	ENST00000345716		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000539061	ENST00000488380		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-3UTR	ENST00000539061	ENST00000420808		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
intron-intron	ENST00000539061	ENST00000464280		ChiTaRS3.1			BF858378	C2CD3	chr11	73881447	-	NISCH	chr3	52515281	+
3UTR-3UTR	ENST00000448120	ENST00000448120		ChiTaRS3.1			BC019618	TULP3	chr12	3048889	-	TULP3	chr12	3049277	+
3UTR-intron	ENST00000448120	ENST00000397132		ChiTaRS3.1			BC019618	TULP3	chr12	3048889	-	TULP3	chr12	3049277	+
intron-3UTR	ENST00000397132	ENST00000448120		ChiTaRS3.1			BC019618	TULP3	chr12	3048889	-	TULP3	chr12	3049277	+
intron-intron	ENST00000397132	ENST00000397132		ChiTaRS3.1			BC019618	TULP3	chr12	3048889	-	TULP3	chr12	3049277	+
3UTR-3UTR	ENST00000338008	ENST00000338008		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000338008	ENST00000510158		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000338008	ENST00000505560		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-intron	ENST00000338008	ENST00000512442		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000510158	ENST00000338008		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000510158	ENST00000510158		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000510158	ENST00000505560		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-intron	ENST00000510158	ENST00000512442		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000505560	ENST00000338008		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000505560	ENST00000510158		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-3UTR	ENST00000505560	ENST00000505560		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
3UTR-intron	ENST00000505560	ENST00000512442		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
intron-3UTR	ENST00000512442	ENST00000338008		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
intron-3UTR	ENST00000512442	ENST00000510158		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
intron-3UTR	ENST00000512442	ENST00000505560		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
intron-intron	ENST00000512442	ENST00000512442		ChiTaRS3.1			BQ428538	ZFYVE16	chr5	79773491	-	ZFYVE16	chr5	79773528	+
intron-intron	ENST00000251203	ENST00000309415		ChiTaRS3.1			BF805568	PBX4	chr19	19703979	+	SH3RF3	chr2	109831434	-
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911248	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911248	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911248	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911248	ECH1	chr19	39307135	+	ECH1	chr19	39306165	-
5UTR-intron	ENST00000327896	ENST00000378628		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5UTR-intron	ENST00000327896	ENST00000491253		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5UTR-intron	ENST00000327896	ENST00000543642		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5UTR-5UTR	ENST00000327896	ENST00000542554		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5UTR-5UTR	ENST00000327896	ENST00000449135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5UTR-intron	ENST00000327896	ENST00000463135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000417561	ENST00000378628		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000417561	ENST00000491253		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000417561	ENST00000543642		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000417561	ENST00000542554		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000417561	ENST00000449135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000417561	ENST00000463135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-intron	ENST00000490605	ENST00000378628		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-intron	ENST00000490605	ENST00000491253		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-intron	ENST00000490605	ENST00000543642		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-5UTR	ENST00000490605	ENST00000542554		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-5UTR	ENST00000490605	ENST00000449135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
5CDS-intron	ENST00000490605	ENST00000463135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000393526	ENST00000378628		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000393526	ENST00000491253		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000393526	ENST00000543642		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000393526	ENST00000542554		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000393526	ENST00000449135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000393526	ENST00000463135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000470789	ENST00000378628		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000470789	ENST00000491253		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000470789	ENST00000543642		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000470789	ENST00000542554		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-5UTR	ENST00000470789	ENST00000449135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-intron	ENST00000470789	ENST00000463135		ChiTaRS3.1			BQ226718	FAM178B	chr2	97651977	-	PRRG1	chrX	37245850	+
intron-3UTR	ENST00000540367	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000540367	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000540367	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000540367	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000540367	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000376618	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000376618	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000376618	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000376618	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000376618	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000265641	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000265641	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000265641	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000265641	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000265641	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000539743	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000539743	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000539743	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000539743	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000539743	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000537756	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000537756	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000537756	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000537756	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000537756	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000538994	ENST00000229239		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000538994	ENST00000396856		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000538994	ENST00000396861		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-3UTR	ENST00000538994	ENST00000396859		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-intron	ENST00000538994	ENST00000396858		ChiTaRS3.1			BM041208	CPT1A	chr11	68552431	-	GAPDH	chr12	6647494	+
intron-5UTR	ENST00000330154	ENST00000330154		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000330154	ENST00000328766		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000330154	ENST00000356824		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000330154	ENST00000467416		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000328766	ENST00000330154		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000328766	ENST00000328766		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000328766	ENST00000356824		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000328766	ENST00000467416		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000356824	ENST00000330154		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000356824	ENST00000328766		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000356824	ENST00000356824		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000356824	ENST00000467416		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000467416	ENST00000330154		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000467416	ENST00000328766		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000467416	ENST00000356824		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
intron-5UTR	ENST00000467416	ENST00000467416		ChiTaRS3.1			BI044858	ARMCX2	chrX	100912660	+	ARMCX2	chrX	100913494	-
3UTR-intron	ENST00000301738	ENST00000396353		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
3UTR-intron	ENST00000301738	ENST00000396355		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
3UTR-intron	ENST00000301738	ENST00000396354		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
3UTR-intron	ENST00000301738	ENST00000342673		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
3UTR-intron	ENST00000301738	ENST00000571896		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000564195	ENST00000396353		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000564195	ENST00000396355		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000564195	ENST00000396354		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000564195	ENST00000342673		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000564195	ENST00000571896		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000569689	ENST00000396353		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000569689	ENST00000396355		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000569689	ENST00000396354		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000569689	ENST00000342673		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000569689	ENST00000571896		ChiTaRS3.1			BF084658	KCTD5	chr16	2758621	-	NDE1	chr16	15808881	-
intron-intron	ENST00000283558	ENST00000283558		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000283558	ENST00000375630		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000283558	ENST00000487903		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000283558	ENST00000375645		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-intron	ENST00000283558	ENST00000419448		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000375630	ENST00000283558		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375630	ENST00000375630		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375630	ENST00000487903		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375630	ENST00000375645		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000375630	ENST00000419448		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000487903	ENST00000283558		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000487903	ENST00000375630		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000487903	ENST00000487903		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000487903	ENST00000375645		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000487903	ENST00000419448		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000375645	ENST00000283558		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375645	ENST00000375630		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375645	ENST00000487903		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-3UTR	ENST00000375645	ENST00000375645		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
3UTR-intron	ENST00000375645	ENST00000419448		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-intron	ENST00000419448	ENST00000283558		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000419448	ENST00000375630		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000419448	ENST00000487903		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-3UTR	ENST00000419448	ENST00000375645		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
intron-intron	ENST00000419448	ENST00000419448		ChiTaRS3.1			BQ307328	ATP11A	chr13	113536446	-	ATP11A	chr13	113536727	+
5CDS-intron	ENST00000356798	ENST00000215071		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000356798	ENST00000602911		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-5UTR	ENST00000356798	ENST00000592035		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000358164	ENST00000215071		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000358164	ENST00000602911		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-5UTR	ENST00000358164	ENST00000592035		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000454514	ENST00000215071		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000454514	ENST00000602911		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000454514	ENST00000592035		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000433423	ENST00000215071		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000433423	ENST00000602911		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000433423	ENST00000592035		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000568012	ENST00000215071		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000568012	ENST00000602911		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000568012	ENST00000592035		ChiTaRS3.1			BF093758	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-3UTR	ENST00000355619	ENST00000217195		ChiTaRS3.1			AI739608	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000355619	ENST00000379772		ChiTaRS3.1			AI739608	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000477982	ENST00000217195		ChiTaRS3.1			AI739608	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000477982	ENST00000379772		ChiTaRS3.1			AI739608	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-intron	ENST00000374761	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000374761	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374761	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000290101	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000290101	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000290101	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374763	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000374763	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374763	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374765	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000374765	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374765	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000542643	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000542643	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000542643	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374757	ENST00000381971		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-3UTR	ENST00000374757	ENST00000324333		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
intron-intron	ENST00000374757	ENST00000461870		ChiTaRS3.1			BU618568	RAP1GAP	chr1	21975850	-	GLIS3	chr9	3824473	+
3UTR-intron	ENST00000534336	ENST00000437508		ChiTaRS3.1			BF753218	MALAT1	chr11	65267144	+	TRIM2	chr4	154154239	+
3UTR-intron	ENST00000534336	ENST00000494872		ChiTaRS3.1			BF753218	MALAT1	chr11	65267144	+	TRIM2	chr4	154154239	+
3UTR-intron	ENST00000534336	ENST00000338700		ChiTaRS3.1			BF753218	MALAT1	chr11	65267144	+	TRIM2	chr4	154154239	+
intron-3CDS	ENST00000394936	ENST00000359015		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
intron-3CDS	ENST00000394936	ENST00000355845		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
intron-intron	ENST00000394936	ENST00000463140		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
intron-3CDS	ENST00000394934	ENST00000359015		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
intron-3CDS	ENST00000394934	ENST00000355845		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
intron-intron	ENST00000394934	ENST00000463140		ChiTaRS3.1			CA311128	PSAP	chr10	73576366	+	MAP3K5	chr6	136878956	-
3UTR-3CDS	ENST00000368476	ENST00000084798		ChiTaRS3.1			BF954758	CHRNB2	chr1	154552109	-	CA11	chr19	49143438	+
intron-3UTR	ENST00000282388	ENST00000264313		ChiTaRS3.1			AW080228	ZFP36L2	chr2	43449782	+	SLAIN2	chr4	48425613	-
intron-intron	ENST00000282388	ENST00000506375		ChiTaRS3.1			AW080228	ZFP36L2	chr2	43449782	+	SLAIN2	chr4	48425613	-
intron-3UTR	ENST00000282388	ENST00000512093		ChiTaRS3.1			AW080228	ZFP36L2	chr2	43449782	+	SLAIN2	chr4	48425613	-
intron-intron	ENST00000539805	ENST00000539805		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000480436		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000337743		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000539805	ENST00000544472		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000539805		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000480436		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000337743		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000480436	ENST00000544472		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000539805		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000480436		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000337743		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000337743	ENST00000544472		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000539805		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000480436		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000337743		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
intron-intron	ENST00000544472	ENST00000544472		ChiTaRS3.1			BF376668	TASP1	chr20	13435065	-	TASP1	chr20	13435447	-
5UTR-intron	ENST00000265062	ENST00000566813		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
5UTR-intron	ENST00000265062	ENST00000262506		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
5UTR-intron	ENST00000482525	ENST00000566813		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
5UTR-intron	ENST00000482525	ENST00000262506		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
intron-intron	ENST00000485280	ENST00000566813		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
intron-intron	ENST00000485280	ENST00000262506		ChiTaRS3.1			AI077688	RAB7A	chr3	128445071	-	CSNK2A2	chr16	58194681	+
intron-5UTR	ENST00000344423	ENST00000344423		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000344423	ENST00000523202		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000344423	ENST00000523095		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000344423	ENST00000519730		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-5UTR	ENST00000523202	ENST00000344423		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523202	ENST00000523202		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523202	ENST00000523095		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523202	ENST00000519730		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-5UTR	ENST00000523095	ENST00000344423		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523095	ENST00000523202		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523095	ENST00000523095		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000523095	ENST00000519730		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-5UTR	ENST00000519730	ENST00000344423		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000519730	ENST00000523202		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000519730	ENST00000523095		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
intron-intron	ENST00000519730	ENST00000519730		ChiTaRS3.1			DA812458	ZNF395	chr8	28209269	-	ZNF395	chr8	28218691	-
5CDS-5UTR	ENST00000323963	ENST00000442011		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000323963	ENST00000305126		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000323963	ENST00000508076		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000323963	ENST00000504185		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-5UTR	ENST00000440191	ENST00000442011		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000440191	ENST00000305126		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000440191	ENST00000508076		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000440191	ENST00000504185		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-5UTR	ENST00000356531	ENST00000442011		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000356531	ENST00000305126		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000356531	ENST00000508076		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
5CDS-intron	ENST00000356531	ENST00000504185		ChiTaRS3.1			DA027118	EIF4A2	chr3	186503752	+	TGFBI	chr5	135364680	+
intron-intron	ENST00000544907	ENST00000544907		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000544907	ENST00000226225		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000544907	ENST00000583213		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000226225	ENST00000544907		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000226225	ENST00000226225		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000226225	ENST00000583213		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000583213	ENST00000544907		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000583213	ENST00000226225		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000583213	ENST00000583213		ChiTaRS3.1			BE144448	TNFAIP1	chr17	26670094	+	TNFAIP1	chr17	26665228	+
intron-intron	ENST00000529615	ENST00000529615		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000529615	ENST00000328697		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000529615	ENST00000317945		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000328697	ENST00000529615		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000328697	ENST00000328697		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000328697	ENST00000317945		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000317945	ENST00000529615		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000317945	ENST00000328697		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
intron-intron	ENST00000317945	ENST00000317945		ChiTaRS3.1			BF666038	CCDC34	chr11	27384542	+	CCDC34	chr11	27384492	-
3UTR-3UTR	ENST00000273590	ENST00000273590		ChiTaRS3.1			BE221388	TCTA	chr3	49453584	-	TCTA	chr3	49453644	+
3UTR-intron	ENST00000273590	ENST00000493381		ChiTaRS3.1			BE221388	TCTA	chr3	49453584	-	TCTA	chr3	49453644	+
intron-3UTR	ENST00000493381	ENST00000273590		ChiTaRS3.1			BE221388	TCTA	chr3	49453584	-	TCTA	chr3	49453644	+
intron-intron	ENST00000493381	ENST00000493381		ChiTaRS3.1			BE221388	TCTA	chr3	49453584	-	TCTA	chr3	49453644	+
intron-3UTR	ENST00000534307	ENST00000466801		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
intron-3UTR	ENST00000534307	ENST00000409321		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
intron-3UTR	ENST00000534307	ENST00000409115		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
intron-3UTR	ENST00000534307	ENST00000341369		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
intron-3UTR	ENST00000534307	ENST00000409683		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
intron-3UTR	ENST00000534307	ENST00000410064		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000466801		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000409321		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000409115		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000341369		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000409683		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000528302	ENST00000410064		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000466801		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000409321		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000409115		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000341369		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000409683		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
5CDS-3UTR	ENST00000322535	ENST00000410064		ChiTaRS3.1			BG164388	SF3B2	chr11	65826433	+	PTMA	chr2	232576624	+
3UTR-3CDS	ENST00000375664	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375664	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375664	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375664	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000375664	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000375664	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375646	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375646	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375646	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000375646	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000375646	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000375646	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000347934	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000347934	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000347934	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000347934	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000347934	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000347934	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000354911	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000354911	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000354911	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-3CDS	ENST00000354911	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000354911	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
3UTR-intron	ENST00000354911	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000428935	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000428935	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000428935	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000428935	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-intron	ENST00000428935	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-intron	ENST00000428935	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000532233	ENST00000375664		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000532233	ENST00000375646		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000532233	ENST00000347934		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-3CDS	ENST00000532233	ENST00000354911		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-intron	ENST00000532233	ENST00000428935		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-intron	ENST00000532233	ENST00000532233		ChiTaRS3.1			BQ774038	WAC	chr10	28908672	-	WAC	chr10	28905106	+
intron-intron	ENST00000379170	ENST00000266742		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000379170	ENST00000429527		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000379170	ENST00000555114		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000379170	ENST00000411739		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000379170	ENST00000557644		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000379170	ENST00000457368		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000266742		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000429527		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000555114		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000411739		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000557644		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000359495	ENST00000457368		ChiTaRS3.1			BF332108	MCUR1	chr6	13789098	-	NEDD1	chr12	97342426	+
intron-intron	ENST00000414209	ENST00000282344		ChiTaRS3.1			BE971228	JPX	chrX	73169081	-	USP12	chr13	27683819	-
intron-intron	ENST00000231484	ENST00000518347		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000231484	ENST00000424248		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000231484	ENST00000262585		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000231484	ENST00000519811		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000231484	ENST00000518806		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000231484	ENST00000523308		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000518347		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000424248		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000262585		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000519811		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000518806		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-intron	ENST00000512221	ENST00000523308		ChiTaRS3.1			BG988938	PCDH12	chr5	141325482	-	DENND3	chr8	142169348	+
intron-3UTR	ENST00000526148	ENST00000526148		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000526148	ENST00000525681		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000526148	ENST00000339995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000526148	ENST00000396525		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525681	ENST00000526148		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525681	ENST00000525681		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525681	ENST00000339995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525681	ENST00000396525		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000339995	ENST00000526148		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000339995	ENST00000525681		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000339995	ENST00000339995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000339995	ENST00000396525		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000396525	ENST00000526148		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000396525	ENST00000525681		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000396525	ENST00000339995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000396525	ENST00000396525		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525995	ENST00000526148		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525995	ENST00000525681		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525995	ENST00000339995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-3UTR	ENST00000525995	ENST00000396525		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			AW837948	EIF4G2	chr11	10819304	+	EIF4G2	chr11	10818839	+
3UTR-3UTR	ENST00000308664	ENST00000307584		ChiTaRS3.1			BF790578	ATP2A2	chr12	110788517	+	MURC	chr9	103349577	+
3UTR-3UTR	ENST00000395494	ENST00000307584		ChiTaRS3.1			BF790578	ATP2A2	chr12	110788517	+	MURC	chr9	103349577	+
intron-3UTR	ENST00000539276	ENST00000307584		ChiTaRS3.1			BF790578	ATP2A2	chr12	110788517	+	MURC	chr9	103349577	+
intron-3UTR	ENST00000550248	ENST00000307584		ChiTaRS3.1			BF790578	ATP2A2	chr12	110788517	+	MURC	chr9	103349577	+
intron-3UTR	ENST00000552636	ENST00000307584		ChiTaRS3.1			BF790578	ATP2A2	chr12	110788517	+	MURC	chr9	103349577	+
intron-intron	ENST00000377899	ENST00000452201		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000377899	ENST00000398417		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000377899	ENST00000342988		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000377899	ENST00000588745		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000377899	ENST00000586253		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000262545	ENST00000452201		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000262545	ENST00000398417		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000262545	ENST00000342988		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000262545	ENST00000588745		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000262545	ENST00000586253		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000536609	ENST00000452201		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000536609	ENST00000398417		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000536609	ENST00000342988		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000536609	ENST00000588745		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000536609	ENST00000586253		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000459871	ENST00000452201		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000459871	ENST00000398417		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000459871	ENST00000342988		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000459871	ENST00000588745		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-intron	ENST00000459871	ENST00000586253		ChiTaRS3.1			BF825528	PCSK2	chr20	17256436	+	SMAD4	chr18	48559252	+
intron-3CDS	ENST00000393965	ENST00000421865		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
intron-3UTR	ENST00000393965	ENST00000498257		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
intron-3CDS	ENST00000290418	ENST00000421865		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
intron-3UTR	ENST00000290418	ENST00000498257		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
intron-3CDS	ENST00000471713	ENST00000421865		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
intron-3UTR	ENST00000471713	ENST00000498257		ChiTaRS3.1			T06308	CCDC142	chr2	74709387	-	LAMA2	chr6	129813607	-
5CDS-intron	ENST00000249373	ENST00000551492		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000346562		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000341321		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000548645		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000356141		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000357798		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000547068		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000551008		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
5CDS-intron	ENST00000249373	ENST00000550662		ChiTaRS3.1			BF929178	SMO	chr7	128850874	-	NPAS3	chr14	34161916	-
intron-3UTR	ENST00000478253	ENST00000242810		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-3UTR	ENST00000478253	ENST00000454652		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000478253	ENST00000476808		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000478253	ENST00000461813		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-3UTR	ENST00000295962	ENST00000242810		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-3UTR	ENST00000295962	ENST00000454652		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000295962	ENST00000476808		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000295962	ENST00000461813		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-3UTR	ENST00000480457	ENST00000242810		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-3UTR	ENST00000480457	ENST00000454652		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000480457	ENST00000476808		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000480457	ENST00000461813		ChiTaRS3.1			AW384958	ABHD6	chr3	58231495	-	KLHL24	chr3	183397203	+
intron-intron	ENST00000518527	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000518527	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000377360	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000328939	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000390656	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000520740	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000434108	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000518527		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000377360		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000328939		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000390656		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000520740		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000434108		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
intron-intron	ENST00000411494	ENST00000411494		ChiTaRS3.1			BF767818	KCNIP1	chr5	169805642	-	KCNIP1	chr5	169805893	+
3UTR-3UTR	ENST00000371065	ENST00000371065		ChiTaRS3.1			BQ223948	LEPROT	chr1	65900836	-	LEPROT	chr1	65900886	+
3UTR-intron	ENST00000371065	ENST00000484243		ChiTaRS3.1			BQ223948	LEPROT	chr1	65900836	-	LEPROT	chr1	65900886	+
intron-3UTR	ENST00000484243	ENST00000371065		ChiTaRS3.1			BQ223948	LEPROT	chr1	65900836	-	LEPROT	chr1	65900886	+
intron-intron	ENST00000484243	ENST00000484243		ChiTaRS3.1			BQ223948	LEPROT	chr1	65900836	-	LEPROT	chr1	65900886	+
intron-intron	ENST00000560305	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000560305	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000560305	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000560305	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000561011	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000559911	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558113	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000358005	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000416810	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558750	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558871	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000337620		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-5UTR	ENST00000560109	ENST00000396386		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000409747		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000497498		ChiTaRS3.1			BF692738	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-3CDS	ENST00000380672	ENST00000350425		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380672	ENST00000343533		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380672	ENST00000341514		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380667	ENST00000350425		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380667	ENST00000343533		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380667	ENST00000341514		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000545497	ENST00000350425		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000545497	ENST00000343533		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000545497	ENST00000341514		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380666	ENST00000350425		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380666	ENST00000343533		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000380666	ENST00000341514		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000471301	ENST00000350425		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000471301	ENST00000343533		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000471301	ENST00000341514		ChiTaRS3.1			X69208	BNC2	chr9	16634399	+	ATP7A	chrX	77166199	+
intron-3CDS	ENST00000255557	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000577615	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000268942	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000359042	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
intron-3CDS	ENST00000426147	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000535032	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000582793	ENST00000281043		ChiTaRS3.1			CX753028	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
3UTR-3UTR	ENST00000376929	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-intron	ENST00000376929	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
intron-3UTR	ENST00000506690	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
intron-intron	ENST00000506690	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-3UTR	ENST00000389805	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-intron	ENST00000389805	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-3UTR	ENST00000402874	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-intron	ENST00000402874	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-3UTR	ENST00000510187	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-intron	ENST00000510187	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-3UTR	ENST00000360718	ENST00000356495		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
3UTR-intron	ENST00000360718	ENST00000487208		ChiTaRS3.1			AA552118	SQSTM1	chr5	179263914	-	PIGR	chr1	207102314	-
intron-3CDS	ENST00000418814	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000418814	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000418814	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000370479	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000370479	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505769	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000505769	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000457062	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000457062	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000361499	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000361499	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000505868	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000505868	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000454682		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000550952		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000356769		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000552540		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000393891		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000548563		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3CDS	ENST00000508844	ENST00000546392		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-intron	ENST00000508844	ENST00000551793		ChiTaRS3.1			CN271038	FAM135A	chr6	71263512	+	NACA	chr12	57106653	-
intron-3UTR	ENST00000412553	ENST00000358155		ChiTaRS3.1			BC057798	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000367733		ChiTaRS3.1			BC057798	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000355305		ChiTaRS3.1			BC057798	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-3UTR	ENST00000412553	ENST00000367731		ChiTaRS3.1			BC057798	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-intron	ENST00000412553	ENST00000520906		ChiTaRS3.1			BC057798	LINC00652	chr20	18769227	-	DNM3	chr1	172381109	+
intron-3CDS	ENST00000317133	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000317133	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000317133	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000317133	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000317133	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000317133	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375741	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375741	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375741	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375741	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375741	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375741	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375739	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375739	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375739	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375739	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375739	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375739	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000370623	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000370623	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000370623	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000370623	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000370623	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000370623	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000544132	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000544132	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000544132	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000544132	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000544132	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000544132	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000218789	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000218789	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000218789	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000218789	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000218789	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000218789	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375736	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375736	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375736	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375736	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375736	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375736	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000426073	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000426073	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000426073	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000426073	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000426073	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000426073	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375737	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375737	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375737	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375737	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375737	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375737	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375723	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000375723	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375723	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375723	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000375723	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000375723	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000478679	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000478679	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000478679	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000478679	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000478679	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000478679	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000483189	ENST00000317133		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-3CDS	ENST00000483189	ENST00000375741		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000375739		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000370623		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000483189	ENST00000544132		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000483189	ENST00000218789		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-5UTR	ENST00000483189	ENST00000375736		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000426073		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000375737		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000375723		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000478679		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000483189	ENST00000483189		ChiTaRS3.1			BF111258	ARHGEF7	chr13	111933839	+	ARHGEF7	chr13	111806292	-
intron-intron	ENST00000475243	ENST00000475243		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000475243	ENST00000395802		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000475243	ENST00000265619		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000395802	ENST00000475243		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000395802	ENST00000395802		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000395802	ENST00000265619		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000265619	ENST00000475243		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000265619	ENST00000395802		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000265619	ENST00000265619		ChiTaRS3.1			BF872158	VAPB	chr20	57010657	+	VAPB	chr20	56999371	+
intron-intron	ENST00000374586	ENST00000238256		ChiTaRS3.1			BF376848	TMEM245	chr9	111801232	-	FKBP15	chr9	116025045	-
intron-intron	ENST00000374586	ENST00000493847		ChiTaRS3.1			BF376848	TMEM245	chr9	111801232	-	FKBP15	chr9	116025045	-
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN917358	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000319416	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000319416	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000319416	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000319416	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000319416	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000319416	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000258298	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367643	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367642	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367641	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000319416		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000258298		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000367643		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000367642		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000367641		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
intron-intron	ENST00000367639	ENST00000367639		ChiTaRS3.1			AW937708	TEX35	chr1	178514714	+	TEX35	chr1	178514762	-
3UTR-intron	ENST00000393892	ENST00000374399		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000393892	ENST00000003912		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000393892	ENST00000358028		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000393892	ENST00000339255		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000393892	ENST00000428131		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000393892	ENST00000488155		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000374399		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000003912		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000358028		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000339255		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000428131		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000472031	ENST00000488155		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000374399		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000003912		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000358028		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000339255		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000428131		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000591072	ENST00000488155		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000374399		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000003912		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000358028		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000339255		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000428131		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000592446	ENST00000488155		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000374399		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000003912		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000358028		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000339255		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000428131		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
intron-intron	ENST00000393888	ENST00000488155		ChiTaRS3.1			AA935868	CNP	chr17	40128491	-	NIPAL3	chr1	24792795	+
3UTR-intron	ENST00000306085	ENST00000416600		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000306085	ENST00000428216		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000306085	ENST00000358134		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000487252	ENST00000416600		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000487252	ENST00000428216		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000487252	ENST00000358134		ChiTaRS3.1			BI041328	TRIM56	chr7	100732953	-	MAVS	chr20	3852281	+
3UTR-intron	ENST00000262291	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
3UTR-intron	ENST00000262291	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000537567	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000537567	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000539763	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000539763	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000536180	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000536180	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000545362	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000545362	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000588617	ENST00000304611		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
intron-intron	ENST00000588617	ENST00000244546		ChiTaRS3.1			AA295678	VMP1	chr17	57917593	+	PEX6	chr6	42934207	-
3UTR-3UTR	ENST00000578868	ENST00000578868		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000578868	ENST00000321337		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000578868	ENST00000429205		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000321337	ENST00000578868		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000321337	ENST00000321337		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000321337	ENST00000429205		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000429205	ENST00000578868		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000429205	ENST00000321337		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
3UTR-3UTR	ENST00000429205	ENST00000429205		ChiTaRS3.1			CN412798	SENP3	chr17	7474849	-	SENP3	chr17	7474832	+
intron-intron	ENST00000380958	ENST00000398805		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000380958	ENST00000398803		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000380958	ENST00000488101		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000380958	ENST00000262542		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000380958	ENST00000539114		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000399613	ENST00000398805		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000399613	ENST00000398803		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000399613	ENST00000488101		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000399613	ENST00000262542		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000399613	ENST00000539114		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000282391	ENST00000398805		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000282391	ENST00000398803		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000282391	ENST00000488101		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000282391	ENST00000262542		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000282391	ENST00000539114		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000483842	ENST00000398805		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000483842	ENST00000398803		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000483842	ENST00000488101		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000483842	ENST00000262542		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
intron-intron	ENST00000483842	ENST00000539114		ChiTaRS3.1			AW885158	PAN3	chr13	28779305	-	HSDL2	chr9	115209744	+
Frame-shit	ENST00000402696	ENST00000402696		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
Frame-shit	ENST00000402696	ENST00000264998		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
5CDS-intron	ENST00000402696	ENST00000475382		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
Frame-shit	ENST00000264998	ENST00000402696		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
Frame-shit	ENST00000264998	ENST00000264998		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
5CDS-intron	ENST00000264998	ENST00000475382		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
intron-3CDS	ENST00000475382	ENST00000402696		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
intron-3CDS	ENST00000475382	ENST00000264998		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
intron-intron	ENST00000475382	ENST00000475382		ChiTaRS3.1			W27988	TF	chr3	133478058	-	TF	chr3	133475763	+
In-frame	ENST00000334344	ENST00000360252		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000334344	ENST00000475892		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000334344	ENST00000356185		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000334344	ENST00000350612		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000334344	ENST00000464744		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000334344	ENST00000542180		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000334344	ENST00000470359		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000422737	ENST00000360252		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000422737	ENST00000475892		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000422737	ENST00000356185		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000422737	ENST00000350612		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000422737	ENST00000464744		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000422737	ENST00000542180		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000422737	ENST00000470359		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-3CDS	ENST00000479608	ENST00000360252		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-3CDS	ENST00000479608	ENST00000475892		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-3CDS	ENST00000479608	ENST00000356185		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-3CDS	ENST00000479608	ENST00000350612		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-3CDS	ENST00000479608	ENST00000464744		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-intron	ENST00000479608	ENST00000542180		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
3UTR-intron	ENST00000479608	ENST00000470359		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000444670	ENST00000360252		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000444670	ENST00000475892		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000444670	ENST00000356185		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000444670	ENST00000350612		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
In-frame	ENST00000444670	ENST00000464744		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000444670	ENST00000542180		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
5CDS-intron	ENST00000444670	ENST00000470359		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-3CDS	ENST00000457135	ENST00000360252		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-3CDS	ENST00000457135	ENST00000475892		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-3CDS	ENST00000457135	ENST00000356185		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-3CDS	ENST00000457135	ENST00000350612		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-3CDS	ENST00000457135	ENST00000464744		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-intron	ENST00000457135	ENST00000542180		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-intron	ENST00000457135	ENST00000470359		ChiTaRS3.1			AL691598	ARID2	chr12	46244956	+	SUPT20H	chr13	37591465	-
intron-intron	ENST00000588847	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588847	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588847	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000216487		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000418924		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000557762		ChiTaRS3.1			BI021858	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
5CDS-intron	ENST00000367549	ENST00000412830		ChiTaRS3.1			BU733758	DHX9	chr1	182856547	-	PWP1	chr12	108102048	-
5CDS-intron	ENST00000367549	ENST00000541166		ChiTaRS3.1			BU733758	DHX9	chr1	182856547	-	PWP1	chr12	108102048	-
3UTR-intron	ENST00000485081	ENST00000412830		ChiTaRS3.1			BU733758	DHX9	chr1	182856547	-	PWP1	chr12	108102048	-
3UTR-intron	ENST00000485081	ENST00000541166		ChiTaRS3.1			BU733758	DHX9	chr1	182856547	-	PWP1	chr12	108102048	-
intron-intron	ENST00000332556	ENST00000291900		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-intron	ENST00000332556	ENST00000494461		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-intron	ENST00000397181	ENST00000291900		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-intron	ENST00000397181	ENST00000494461		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-intron	ENST00000471046	ENST00000291900		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-intron	ENST00000471046	ENST00000494461		ChiTaRS3.1			BG002218	LAMP1	chr13	113969095	+	ZER1	chr9	131517501	-
intron-5UTR	ENST00000343028	ENST00000265304		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000343028	ENST00000498107		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000343028	ENST00000469123		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000343028	ENST00000465582		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000343028	ENST00000484178		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000343028	ENST00000481508		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-5UTR	ENST00000542667	ENST00000265304		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000542667	ENST00000498107		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000542667	ENST00000469123		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000542667	ENST00000465582		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000542667	ENST00000484178		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000542667	ENST00000481508		ChiTaRS3.1			BM838078	TM7SF3	chr12	27126824	-	SSBP1	chr7	141438128	+
intron-intron	ENST00000539054	ENST00000390168		ChiTaRS3.1			BI053738	TXNDC5	chr6	7882050	-	H19	chr11	2018805	+
intron-intron	ENST00000379757	ENST00000390168		ChiTaRS3.1			BI053738	TXNDC5	chr6	7882050	-	H19	chr11	2018805	+
intron-intron	ENST00000473453	ENST00000390168		ChiTaRS3.1			BI053738	TXNDC5	chr6	7882050	-	H19	chr11	2018805	+
intron-intron	ENST00000327171	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000327171	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000327171	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000327171	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000560031	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000560031	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000560031	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000560031	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000396509	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000396509	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000396509	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000396509	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000543495	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000543495	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000543495	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000543495	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000544523	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000544523	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000544523	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000544523	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000559454	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000559454	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000559454	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000559454	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000561014	ENST00000467125		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000561014	ENST00000368498		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000561014	ENST00000535237		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
intron-intron	ENST00000561014	ENST00000052569		ChiTaRS3.1			DB216138	GALK2	chr15	49454059	+	GOPC	chr6	117900229	-
5CDS-5UTR	ENST00000273963	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000273963	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000273963	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000273963	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000273963	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-intron	ENST00000273963	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000498875	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000498875	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000498875	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000498875	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000498875	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-intron	ENST00000498875	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000425278	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000425278	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000425278	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000425278	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000425278	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-intron	ENST00000425278	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-5UTR	ENST00000545252	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-5UTR	ENST00000545252	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-5UTR	ENST00000545252	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-5UTR	ENST00000545252	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-5UTR	ENST00000545252	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5UTR-intron	ENST00000545252	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000512111	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000512111	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000512111	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000512111	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-5UTR	ENST00000512111	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
5CDS-intron	ENST00000512111	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-5UTR	ENST00000506274	ENST00000273963		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-5UTR	ENST00000506274	ENST00000498875		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-5UTR	ENST00000506274	ENST00000425278		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-5UTR	ENST00000506274	ENST00000545252		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-5UTR	ENST00000506274	ENST00000512111		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-intron	ENST00000506274	ENST00000506274		ChiTaRS3.1			BE072088	KLHL8	chr4	88116478	-	KLHL8	chr4	88116844	-
intron-3CDS	ENST00000367255	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367255	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000356820	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000356820	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000423061	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000423061	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000448038	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000448038	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000341594	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000341594	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000265368	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000265368	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000367253	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367253	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000367248	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000367248	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000413186	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000413186	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000466159	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000466159	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000539504	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000539504	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000347037	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000347037	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000354674	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000354674	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-3CDS	ENST00000495090	ENST00000367255		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000356820		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000423061		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000448038		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000341594		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000265368		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000367253		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000367248		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000413186		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000466159		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000539504		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000347037		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000354674		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
intron-intron	ENST00000495090	ENST00000495090		ChiTaRS3.1			BE826658	SYNE1	chr6	152683327	-	SYNE1	chr6	152690687	-
3UTR-3CDS	ENST00000371561	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371561	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371561	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000315048	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000315048	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000315048	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3CDS	ENST00000471122	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3CDS	ENST00000471122	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000471122	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3CDS	ENST00000350902	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3CDS	ENST00000350902	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-3UTR	ENST00000350902	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371553	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371553	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371553	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371546	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371546	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371546	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371559	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371559	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371559	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371555	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371555	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371555	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371550	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371550	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371550	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371560	ENST00000371561		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3CDS	ENST00000371560	ENST00000315048		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000471122		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000350902		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371553		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371546		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371559		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371555		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371550		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
3UTR-3UTR	ENST00000371560	ENST00000371560		ChiTaRS3.1			BQ636708	GRIN1	chr9	140063072	+	GRIN1	chr9	140056481	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835128	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-3UTR	ENST00000370551	ENST00000362003		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370551	ENST00000400151		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370551	ENST00000482726		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370551	ENST00000470161		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370551	ENST00000521023		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370551	ENST00000505655		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-3UTR	ENST00000370550	ENST00000362003		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370550	ENST00000400151		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370550	ENST00000482726		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370550	ENST00000470161		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370550	ENST00000521023		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000370550	ENST00000505655		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-3UTR	ENST00000356813	ENST00000362003		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000356813	ENST00000400151		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000356813	ENST00000482726		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000356813	ENST00000470161		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000356813	ENST00000521023		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-intron	ENST00000356813	ENST00000505655		ChiTaRS3.1			AW086208	HS2ST1	chr1	87483849	-	PCGF3	chr4	763719	+
intron-3UTR	ENST00000407471	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000407471	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000407471	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000407471	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000407471	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000407471	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000435822	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000435822	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000435822	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000435822	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000435822	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000435822	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000490922	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000490922	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000490922	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000490922	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000490922	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000490922	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000404664	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000404664	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000404664	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000404664	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000404664	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000404664	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000447813	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000447813	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000447813	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000447813	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000447813	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000447813	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000402766	ENST00000407471		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-3UTR	ENST00000402766	ENST00000435822		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-5UTR	ENST00000402766	ENST00000490922		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000402766	ENST00000404664		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000402766	ENST00000447813		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000402766	ENST00000402766		ChiTaRS3.1			BE771748	GUCD1	chr22	24936599	+	GUCD1	chr22	24936889	-
intron-intron	ENST00000337288	ENST00000421865		ChiTaRS3.1			BF987138	STARD7	chr2	96851650	+	LAMA2	chr6	129302893	+
intron-intron	ENST00000337288	ENST00000498257		ChiTaRS3.1			BF987138	STARD7	chr2	96851650	+	LAMA2	chr6	129302893	+
intron-intron	ENST00000462501	ENST00000421865		ChiTaRS3.1			BF987138	STARD7	chr2	96851650	+	LAMA2	chr6	129302893	+
intron-intron	ENST00000462501	ENST00000498257		ChiTaRS3.1			BF987138	STARD7	chr2	96851650	+	LAMA2	chr6	129302893	+
intron-intron	ENST00000450793	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000450793	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000538141	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380180	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000318007	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000437932	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000317968	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000542407	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000508216	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000514743	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000380176	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000359265	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000512274	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000450793		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000538141		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000380180		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000318007		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000437932		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000317968		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000542407		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000508216		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000514743		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000380176		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000359265		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000512274		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000504489	ENST00000504489		ChiTaRS3.1			BF912578	PDLIM5	chr4	95497504	+	PDLIM5	chr4	95497292	-
intron-intron	ENST00000372084	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372084	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372084	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372084	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372084	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372086	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372086	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372086	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372086	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000372086	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000341771	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000341771	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000341771	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000341771	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000341771	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000486676	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000486676	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000486676	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000486676	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000486676	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000538496	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000538496	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000538496	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000538496	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000538496	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000451835	ENST00000367058		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000451835	ENST00000367059		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000451835	ENST00000367057		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000451835	ENST00000458541		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000451835	ENST00000485707		ChiTaRS3.1			AA834608	TESK2	chr1	45953859	-	CR2	chr1	207645311	-
intron-intron	ENST00000375098	ENST00000375098		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000375098	ENST00000478530		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000375098	ENST00000342043		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-3UTR	ENST00000375098	ENST00000341469		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000375098	ENST00000538344		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000478530	ENST00000375098		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000478530	ENST00000478530		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000478530	ENST00000342043		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-3UTR	ENST00000478530	ENST00000341469		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000478530	ENST00000538344		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000342043	ENST00000375098		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000342043	ENST00000478530		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000342043	ENST00000342043		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-3UTR	ENST00000342043	ENST00000341469		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000342043	ENST00000538344		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000341469	ENST00000375098		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000341469	ENST00000478530		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000341469	ENST00000342043		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-3UTR	ENST00000341469	ENST00000341469		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000341469	ENST00000538344		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000538344	ENST00000375098		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000538344	ENST00000478530		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000538344	ENST00000342043		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-3UTR	ENST00000538344	ENST00000341469		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000538344	ENST00000538344		ChiTaRS3.1			AW816168	TRIM14	chr9	100848189	-	TRIM14	chr9	100848030	+
intron-intron	ENST00000262960	ENST00000429277		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000352360		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000458213		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000263066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000361373		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000372066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000372056		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000310944		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000262960	ENST00000542786		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000429277		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000352360		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000458213		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000263066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000361373		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000372066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000372056		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000310944		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000598800	ENST00000542786		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000429277		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000352360		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000458213		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000263066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000361373		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000372066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000372056		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000310944		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000597849	ENST00000542786		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000429277		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000352360		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000458213		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000263066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000361373		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000372066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000372056		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000310944		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000594671	ENST00000542786		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000429277		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000352360		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000458213		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000263066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000361373		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000372066		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000372056		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000310944		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000601173	ENST00000542786		ChiTaRS3.1			AA994238	DPP9	chr19	4675842	+	LDB3	chr10	88488301	-
intron-intron	ENST00000396981	ENST00000373433		ChiTaRS3.1			AW867848	UBE2G1	chr17	4234687	+	RPRD1B	chr20	36698094	+
intron-intron	ENST00000396981	ENST00000471511		ChiTaRS3.1			AW867848	UBE2G1	chr17	4234687	+	RPRD1B	chr20	36698094	+
intron-intron	ENST00000572484	ENST00000373433		ChiTaRS3.1			AW867848	UBE2G1	chr17	4234687	+	RPRD1B	chr20	36698094	+
intron-intron	ENST00000572484	ENST00000471511		ChiTaRS3.1			AW867848	UBE2G1	chr17	4234687	+	RPRD1B	chr20	36698094	+
intron-intron	ENST00000162391	ENST00000279550		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000162391	ENST00000228251		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000162391	ENST00000546164		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000279550		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000228251		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000546164		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000279550		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000228251		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000546164		ChiTaRS3.1			BF891438	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-3UTR	ENST00000540900	ENST00000342505		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000540900	ENST00000465376		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000584423	ENST00000342505		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000584423	ENST00000465376		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000247026	ENST00000342505		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000247026	ENST00000465376		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000479218	ENST00000342505		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000479218	ENST00000465376		ChiTaRS3.1			BE843948	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000278193	ENST00000307378		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000278193	ENST00000537524		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000278193	ENST00000473830		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000278193	ENST00000452078		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000278193	ENST00000458504		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000278193	ENST00000390670		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000307378		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000537524		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000473830		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000452078		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000458504		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
intron-intron	ENST00000524596	ENST00000390670		ChiTaRS3.1			CA866148	LIN7C	chr11	27516774	+	SLCO1A2	chr12	21531281	-
3UTR-3UTR	ENST00000323534	ENST00000323534		ChiTaRS3.1			BQ330068	RAP2B	chr3	152882020	+	RAP2B	chr3	152881857	-
5CDS-intron	ENST00000537916	ENST00000512994		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000537916	ENST00000505939		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000537916	ENST00000240499		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000537916	ENST00000579770		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000240093	ENST00000512994		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000240093	ENST00000505939		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000240093	ENST00000240499		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
5CDS-intron	ENST00000240093	ENST00000579770		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
intron-intron	ENST00000517911	ENST00000512994		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
intron-intron	ENST00000517911	ENST00000505939		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
intron-intron	ENST00000517911	ENST00000240499		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
intron-intron	ENST00000517911	ENST00000579770		ChiTaRS3.1			BU531878	FZD3	chr8	28385342	+	ZNF141	chr4	317886	+
intron-intron	ENST00000477649	ENST00000312233		ChiTaRS3.1			BF515448	VMA21	chrX	150566070	+	GLIS1	chr1	54118854	-
intron-intron	ENST00000370361	ENST00000312233		ChiTaRS3.1			BF515448	VMA21	chrX	150566070	+	GLIS1	chr1	54118854	-
intron-intron	ENST00000330374	ENST00000312233		ChiTaRS3.1			BF515448	VMA21	chrX	150566070	+	GLIS1	chr1	54118854	-
3UTR-3UTR	ENST00000369851	ENST00000369851		ChiTaRS3.1			BU508128	GNAI3	chr1	110135615	-	GNAI3	chr1	110135647	+
intron-3CDS	ENST00000492661	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000492661	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000492661	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000492661	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000492661	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000492661	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000492661	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-3CDS	ENST00000460393	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-3CDS	ENST00000460393	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000460393	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000460393	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000460393	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000460393	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000460393	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000382989	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000382989	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000382989	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000382989	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000382989	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000382989	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000382989	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-3CDS	ENST00000462745	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-3CDS	ENST00000462745	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000462745	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000462745	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000462745	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000462745	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
3UTR-intron	ENST00000462745	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000493237	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000493237	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000493237	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000493237	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000493237	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000493237	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000493237	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000360490	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000360490	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000360490	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000360490	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000360490	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000360490	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000360490	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000477669	ENST00000492661		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000477669	ENST00000460393		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000477669	ENST00000382989		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000477669	ENST00000462745		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000477669	ENST00000493237		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000477669	ENST00000360490		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-intron	ENST00000477669	ENST00000477669		ChiTaRS3.1			CN417628	MME	chr3	154898954	+	MME	chr3	154864973	+
intron-3CDS	ENST00000375643	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375643	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375643	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375643	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375643	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375643	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-3CDS	ENST00000375629	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375629	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375629	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375629	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375629	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375629	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-3CDS	ENST00000443024	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000443024	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000443024	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000443024	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000443024	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000443024	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-3CDS	ENST00000447699	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000447699	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000447699	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000447699	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000447699	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000447699	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-3CDS	ENST00000375627	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375627	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375627	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000375627	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375627	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000375627	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-3CDS	ENST00000474340	ENST00000375643		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000474340	ENST00000375629		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000474340	ENST00000443024		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-5UTR	ENST00000474340	ENST00000447699		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000474340	ENST00000375627		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000474340	ENST00000474340		ChiTaRS3.1			AU119368	IARS	chr9	95004556	-	IARS	chr9	95019084	-
intron-intron	ENST00000555276	ENST00000555276		ChiTaRS3.1			BF330628	SYNJ2BP-COX16	chr14	70827408	-	SYNJ2BP-COX16	chr14	70827084	+
intron-3CDS	ENST00000510994	ENST00000510994		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000510994	ENST00000354910		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000510994	ENST00000514612		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000510994	ENST00000511751		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000354910	ENST00000510994		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000354910	ENST00000354910		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000354910	ENST00000514612		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000354910	ENST00000511751		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000514612	ENST00000510994		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000514612	ENST00000354910		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000514612	ENST00000514612		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000514612	ENST00000511751		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000511751	ENST00000510994		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000511751	ENST00000354910		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000511751	ENST00000514612		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-3CDS	ENST00000511751	ENST00000511751		ChiTaRS3.1			BM978388	ANAPC13	chr3	134197113	+	ANAPC13	chr3	134197473	-
intron-intron	ENST00000414318	ENST00000468874		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3UTR	ENST00000414318	ENST00000542230		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-intron	ENST00000253692	ENST00000468874		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3UTR	ENST00000253692	ENST00000542230		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-intron	ENST00000429383	ENST00000468874		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3UTR	ENST00000429383	ENST00000542230		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-intron	ENST00000446818	ENST00000468874		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3UTR	ENST00000446818	ENST00000542230		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-intron	ENST00000429924	ENST00000468874		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3UTR	ENST00000429924	ENST00000542230		ChiTaRS3.1			AA876148	TBC1D5	chr3	17768612	+	TMEM50B	chr21	34822665	+
intron-3CDS	ENST00000343470	ENST00000343470		ChiTaRS3.1			BG179468	LYAR	chr4	4283605	+	LYAR	chr4	4276440	-
intron-3CDS	ENST00000343470	ENST00000452476		ChiTaRS3.1			BG179468	LYAR	chr4	4283605	+	LYAR	chr4	4276440	-
intron-3CDS	ENST00000452476	ENST00000343470		ChiTaRS3.1			BG179468	LYAR	chr4	4283605	+	LYAR	chr4	4276440	-
intron-3CDS	ENST00000452476	ENST00000452476		ChiTaRS3.1			BG179468	LYAR	chr4	4283605	+	LYAR	chr4	4276440	-
3UTR-3UTR	ENST00000361069	ENST00000361069		ChiTaRS3.1			BQ367188	LAMC3	chr9	133967193	-	LAMC3	chr9	133967282	+
3UTR-3UTR	ENST00000361069	ENST00000480883		ChiTaRS3.1			BQ367188	LAMC3	chr9	133967193	-	LAMC3	chr9	133967282	+
3UTR-3UTR	ENST00000480883	ENST00000361069		ChiTaRS3.1			BQ367188	LAMC3	chr9	133967193	-	LAMC3	chr9	133967282	+
3UTR-3UTR	ENST00000480883	ENST00000480883		ChiTaRS3.1			BQ367188	LAMC3	chr9	133967193	-	LAMC3	chr9	133967282	+
intron-intron	ENST00000516892	ENST00000343674		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000532868		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000528615		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000395574		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000543978		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000527911		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000456247		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000421244		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000318201		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000454345		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000516892	ENST00000525434		ChiTaRS3.1			BI032998	MEG3	chr14	101314669	-	DGKZ	chr11	46389528	+
intron-intron	ENST00000233813	ENST00000202677		ChiTaRS3.1			BI053318	IGFBP5	chr2	217541113	-	RALGAPA2	chr20	20500085	-
intron-intron	ENST00000233813	ENST00000495793		ChiTaRS3.1			BI053318	IGFBP5	chr2	217541113	-	RALGAPA2	chr20	20500085	-
intron-3CDS	ENST00000373255	ENST00000257497		ChiTaRS3.1			BF805488	H2AFY2	chr10	71853489	-	ANXA1	chr9	75775753	+
intron-3CDS	ENST00000373255	ENST00000376911		ChiTaRS3.1			BF805488	H2AFY2	chr10	71853489	-	ANXA1	chr9	75775753	+
intron-intron	ENST00000373255	ENST00000491192		ChiTaRS3.1			BF805488	H2AFY2	chr10	71853489	-	ANXA1	chr9	75775753	+
intron-intron	ENST00000392209	ENST00000392209		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000420822		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000295414		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000339882		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000392209	ENST00000468768		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000392209		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000420822		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000295414		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000339882		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000420822	ENST00000468768		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000392209		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000420822		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000295414		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000339882		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000295414	ENST00000468768		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000392209		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000420822		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000295414		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000339882		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000339882	ENST00000468768		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000392209		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000420822		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000295414		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000339882		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
intron-intron	ENST00000468768	ENST00000468768		ChiTaRS3.1			AW979128	CCNYL1	chr2	208614469	-	CCNYL1	chr2	208614396	+
5CDS-5UTR	ENST00000296043	ENST00000237654		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
5CDS-intron	ENST00000296043	ENST00000537948		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
5CDS-intron	ENST00000296043	ENST00000504697		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
intron-5UTR	ENST00000473602	ENST00000237654		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
intron-intron	ENST00000473602	ENST00000537948		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
intron-intron	ENST00000473602	ENST00000504697		ChiTaRS3.1			AV722298	SHROOM3	chr4	77678022	+	CCNI	chr4	77987545	-
intron-intron	ENST00000530927	ENST00000530927		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000530927	ENST00000380815		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000530927	ENST00000467288		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000380815	ENST00000530927		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000380815	ENST00000380815		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000380815	ENST00000467288		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000467288	ENST00000530927		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000467288	ENST00000380815		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-intron	ENST00000467288	ENST00000467288		ChiTaRS3.1			CV573848	GMDS	chr6	1626429	-	GMDS	chr6	1629712	-
intron-3CDS	ENST00000368226	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368226	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368226	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368226	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368227	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368227	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368227	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368227	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000532331	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000532331	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000532331	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000532331	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368213	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368213	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368213	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368213	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368210	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368210	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368210	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368210	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368215	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368215	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368215	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368215	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368207	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368207	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000368207	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000368207	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000524481	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000524481	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000524481	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000524481	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000525459	ENST00000426455		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000525459	ENST00000394018		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3CDS	ENST00000525459	ENST00000317296		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-3UTR	ENST00000525459	ENST00000440830		ChiTaRS3.1			R85198	PTPRK	chr6	128530504	+	STAG3	chr7	99800186	+
intron-intron	ENST00000338316	ENST00000433971		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000338316	ENST00000345063		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000338316	ENST00000488841		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000537121	ENST00000433971		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000537121	ENST00000345063		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000537121	ENST00000488841		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000513693	ENST00000433971		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000513693	ENST00000345063		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
intron-intron	ENST00000513693	ENST00000488841		ChiTaRS3.1			BU679228	ADCY2	chr1	152004986	-	TPRG1	chr3	188876816	-
5CDS-intron	ENST00000263645	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000406775		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000342771		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000403018		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000489774		ChiTaRS3.1			M85448	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000444921	ENST00000444921		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000444921	ENST00000339582		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000444921	ENST00000358373		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000444921	ENST00000405249		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000444921	ENST00000480995		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000339582	ENST00000444921		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000339582	ENST00000339582		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000339582	ENST00000358373		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000339582	ENST00000405249		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000339582	ENST00000480995		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000358373	ENST00000444921		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000358373	ENST00000339582		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000358373	ENST00000358373		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000358373	ENST00000405249		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000358373	ENST00000480995		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000405249	ENST00000444921		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000405249	ENST00000339582		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000405249	ENST00000358373		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000405249	ENST00000405249		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000405249	ENST00000480995		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000480995	ENST00000444921		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000480995	ENST00000339582		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000480995	ENST00000358373		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000480995	ENST00000405249		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000480995	ENST00000480995		ChiTaRS3.1			EL582588	GRM8	chr7	126860910	+	GRM8	chr7	126861322	-
intron-intron	ENST00000337673	ENST00000216487		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000337673	ENST00000418924		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000337673	ENST00000557762		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000426306	ENST00000216487		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000426306	ENST00000418924		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000426306	ENST00000557762		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000394177	ENST00000216487		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000394177	ENST00000418924		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
intron-intron	ENST00000394177	ENST00000557762		ChiTaRS3.1			BC062588	ZNF394	chr7	99095461	-	RIN3	chr14	93120621	+
5CDS-intron	ENST00000320785	ENST00000525144		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
5CDS-intron	ENST00000320785	ENST00000529097		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
5CDS-intron	ENST00000320785	ENST00000525704		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
5CDS-intron	ENST00000320785	ENST00000533026		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
5CDS-intron	ENST00000320785	ENST00000416561		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
intron-intron	ENST00000573815	ENST00000525144		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
intron-intron	ENST00000573815	ENST00000529097		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
intron-intron	ENST00000573815	ENST00000525704		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
intron-intron	ENST00000573815	ENST00000533026		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
intron-intron	ENST00000573815	ENST00000416561		ChiTaRS3.1			CN261748	KIF1C	chr17	4906139	+	KIRREL3	chr11	126865258	-
3UTR-intron	ENST00000332556	ENST00000020673		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000332556	ENST00000406432		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000332556	ENST00000492902		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000020673		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000406432		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000397181	ENST00000492902		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000020673		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000406432		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
3UTR-intron	ENST00000471046	ENST00000492902		ChiTaRS3.1			BI045038	LAMP1	chr13	113976737	-	PSD	chr10	104165737	-
Frame-shit	ENST00000216277	ENST00000256637		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
Frame-shit	ENST00000216277	ENST00000538502		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
5CDS-intron	ENST00000216277	ENST00000482236		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000557320	ENST00000256637		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000557320	ENST00000538502		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-intron	ENST00000557320	ENST00000482236		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000554130	ENST00000256637		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000554130	ENST00000538502		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-intron	ENST00000554130	ENST00000482236		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000557471	ENST00000256637		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-3CDS	ENST00000557471	ENST00000538502		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
intron-intron	ENST00000557471	ENST00000482236		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
Frame-shit	ENST00000392990	ENST00000256637		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
Frame-shit	ENST00000392990	ENST00000538502		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
5CDS-intron	ENST00000392990	ENST00000482236		ChiTaRS3.1			BQ307958	PAPOLA	chr14	97014255	+	SORT1	chr1	109888470	-
3UTR-intron	ENST00000358204	ENST00000256429		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000358204	ENST00000579025		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000358204	ENST00000398398		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000358204	ENST00000583046		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000537767	ENST00000256429		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000537767	ENST00000579025		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000537767	ENST00000398398		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000537767	ENST00000583046		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000393481	ENST00000256429		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000393481	ENST00000579025		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000393481	ENST00000398398		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
3UTR-intron	ENST00000393481	ENST00000583046		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000485009	ENST00000256429		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000485009	ENST00000579025		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000485009	ENST00000398398		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000485009	ENST00000583046		ChiTaRS3.1			BF327648	TES	chr7	115898585	-	MBD2	chr18	51737199	-
intron-intron	ENST00000525037	ENST00000525037		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
intron-intron	ENST00000525037	ENST00000530173		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
intron-3UTR	ENST00000525037	ENST00000322157		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
intron-3UTR	ENST00000525037	ENST00000544660		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000530173	ENST00000525037		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000530173	ENST00000530173		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000530173	ENST00000322157		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000530173	ENST00000544660		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000322157	ENST00000525037		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000322157	ENST00000530173		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000322157	ENST00000322157		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000322157	ENST00000544660		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000544660	ENST00000525037		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-intron	ENST00000544660	ENST00000530173		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000544660	ENST00000322157		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
3UTR-3UTR	ENST00000544660	ENST00000544660		ChiTaRS3.1			AW068488	NPEPPS	chr17	45699353	-	NPEPPS	chr17	45699469	+
intron-intron	ENST00000558351	ENST00000558351		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-5UTR	ENST00000558351	ENST00000334660		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-5UTR	ENST00000558351	ENST00000560397		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
3UTR-intron	ENST00000334660	ENST00000558351		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
3UTR-5UTR	ENST00000334660	ENST00000334660		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
3UTR-5UTR	ENST00000334660	ENST00000560397		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-intron	ENST00000560397	ENST00000558351		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-5UTR	ENST00000560397	ENST00000334660		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-5UTR	ENST00000560397	ENST00000560397		ChiTaRS3.1			U61538	CHP1	chr15	41572024	+	CHP1	chr15	41523504	+
intron-3CDS	ENST00000323853	ENST00000323853		ChiTaRS3.1			BE085358	SNRNP200	chr2	96955094	+	SNRNP200	chr2	96949435	+
intron-intron	ENST00000323853	ENST00000349783		ChiTaRS3.1			BE085358	SNRNP200	chr2	96955094	+	SNRNP200	chr2	96949435	+
intron-3CDS	ENST00000349783	ENST00000323853		ChiTaRS3.1			BE085358	SNRNP200	chr2	96955094	+	SNRNP200	chr2	96949435	+
intron-intron	ENST00000349783	ENST00000349783		ChiTaRS3.1			BE085358	SNRNP200	chr2	96955094	+	SNRNP200	chr2	96949435	+
In-frame	ENST00000396863	ENST00000396863		ChiTaRS3.1			BE252428	MYBL2	chr20	42341680	-	MYBL2	chr20	42343783	+
In-frame	ENST00000396863	ENST00000217026		ChiTaRS3.1			BE252428	MYBL2	chr20	42341680	-	MYBL2	chr20	42343783	+
In-frame	ENST00000217026	ENST00000396863		ChiTaRS3.1			BE252428	MYBL2	chr20	42341680	-	MYBL2	chr20	42343783	+
In-frame	ENST00000217026	ENST00000217026		ChiTaRS3.1			BE252428	MYBL2	chr20	42341680	-	MYBL2	chr20	42343783	+
intron-intron	ENST00000353139	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000353139	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000353139	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000360679	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000360679	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000360679	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000394406	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000394406	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000394406	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000335166	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000335166	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000335166	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000416895	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000416895	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000416895	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000361253	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000361253	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000361253	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000588142	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000588142	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000588142	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000589665	ENST00000338368		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000589665	ENST00000314191		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000589665	ENST00000523565		ChiTaRS3.1			BF800878	ACACA	chr17	35765578	+	PRKDC	chr8	48798797	+
intron-intron	ENST00000602433	ENST00000602433		ChiTaRS3.1			BG898608	MKNK1-AS1	chr1	47023089	-	MKNK1-AS1	chr1	47023171	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF377598	CDR1	chrX	139865335	-	CDR1	chrX	139866825	-
intron-intron	ENST00000392524	ENST00000371621		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000392524	ENST00000541713		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
3UTR-intron	ENST00000411529	ENST00000371621		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
3UTR-intron	ENST00000411529	ENST00000541713		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000435711	ENST00000371621		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000435711	ENST00000541713		ChiTaRS3.1			BF877638	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000375400	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000413405		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000414457		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000446807		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000423223		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000445521		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000455774		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000430295		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000608994		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000609413		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000537908		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000427063		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000438202		ChiTaRS3.1			BI041558	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-5UTR	ENST00000541156	ENST00000394945		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000541156	ENST00000282223		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000541156	ENST00000509978		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-5UTR	ENST00000357137	ENST00000394945		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000357137	ENST00000282223		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000357137	ENST00000509978		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-5UTR	ENST00000544094	ENST00000394945		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000544094	ENST00000282223		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000544094	ENST00000509978		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-5UTR	ENST00000414396	ENST00000394945		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000414396	ENST00000282223		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000414396	ENST00000509978		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-5UTR	ENST00000482652	ENST00000394945		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000482652	ENST00000282223		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000482652	ENST00000509978		ChiTaRS3.1			X73608	XPNPEP3	chr22	41347409	-	SPOCK1	chr5	136835014	-
intron-intron	ENST00000361354	ENST00000474531		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000361354	ENST00000394481		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000361354	ENST00000360997		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000361354	ENST00000464064		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000361354	ENST00000447756		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000361354	ENST00000497310		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000360982	ENST00000474531		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000360982	ENST00000394481		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000360982	ENST00000360997		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000360982	ENST00000464064		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000360982	ENST00000447756		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000360982	ENST00000497310		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000478449	ENST00000474531		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000478449	ENST00000394481		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3UTR	ENST00000478449	ENST00000360997		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000478449	ENST00000464064		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000478449	ENST00000447756		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-intron	ENST00000478449	ENST00000497310		ChiTaRS3.1			DA571438	NCKAP1	chr2	183840740	-	FAM107A	chr3	58551052	-
intron-3CDS	ENST00000377795	ENST00000382448		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000377795	ENST00000342159		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-intron	ENST00000377795	ENST00000476036		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000353334	ENST00000382448		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000353334	ENST00000342159		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-intron	ENST00000353334	ENST00000476036		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000524315	ENST00000382448		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000524315	ENST00000342159		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-intron	ENST00000524315	ENST00000476036		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000009530	ENST00000382448		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-3CDS	ENST00000009530	ENST00000342159		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-intron	ENST00000009530	ENST00000476036		ChiTaRS3.1			DA298568	CD74	chr5	149785806	-	JMJD7-PLA2G4B	chr15	42135870	+
intron-intron	ENST00000409785	ENST00000535193		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000543771		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000381306		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000381309		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000442236		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000489243		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000536108		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000428870		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000409785	ENST00000401787		ChiTaRS3.1			BF894528	KCMF1	chr2	85218407	-	KDM4C	chr9	6835284	+
intron-intron	ENST00000326195	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000376545	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000396515	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457111	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000452530	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000416932	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000470464	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000419893	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000448939	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457970	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000475528	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000457078	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000412443	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000546690	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000421608	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000486105	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000383588	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000383587	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000400609	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000485585	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000426219	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000421042	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000552867	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000454094	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000494413	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
5CDS-intron	ENST00000423247	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
5CDS-intron	ENST00000420257	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000456791	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
3UTR-intron	ENST00000495194	ENST00000555688		ChiTaRS3.1			CV374148	ABCF1	chr6	1886008	+	LINC00641	chr14	21672903	-
intron-intron	ENST00000402746	ENST00000402746		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000402746	ENST00000399654		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000402746	ENST00000406869		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000402746	ENST00000265854		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000402746	ENST00000486340		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000399654	ENST00000402746		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000399654	ENST00000399654		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000399654	ENST00000406869		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000399654	ENST00000265854		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000399654	ENST00000486340		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000406869	ENST00000402746		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000406869	ENST00000399654		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000406869	ENST00000406869		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000406869	ENST00000265854		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000406869	ENST00000486340		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000265854	ENST00000402746		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000265854	ENST00000399654		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000265854	ENST00000406869		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000265854	ENST00000265854		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000265854	ENST00000486340		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000486340	ENST00000402746		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000486340	ENST00000399654		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000486340	ENST00000406869		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000486340	ENST00000265854		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000486340	ENST00000486340		ChiTaRS3.1			CV421738	MAD1L1	chr7	2126010	-	MAD1L1	chr7	2126743	-
intron-intron	ENST00000549578	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000549578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000360579		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000552130		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000447578		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000546588		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000549970		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			DN917788	VPS29	chr12	110938729	+	VPS29	chr12	110931470	+
intron-3CDS	ENST00000306065	ENST00000306065		ChiTaRS3.1			BE079528	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000306065	ENST00000587352		ChiTaRS3.1			BE079528	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-3CDS	ENST00000587352	ENST00000306065		ChiTaRS3.1			BE079528	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000587352	ENST00000587352		ChiTaRS3.1			BE079528	ANKRD27	chr19	33095333	+	ANKRD27	chr19	33095213	-
intron-intron	ENST00000366962	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000366962	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000366962	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000366962	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000366962	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000360506	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000360506	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000360506	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000360506	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000360506	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000473303	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000473303	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000473303	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000473303	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000473303	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000544555	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000544555	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000544555	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000544555	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000544555	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000540642	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000540642	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000540642	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000540642	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000540642	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000535388	ENST00000216277		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000535388	ENST00000557320		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000535388	ENST00000554130		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000535388	ENST00000557471		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
intron-intron	ENST00000535388	ENST00000392990		ChiTaRS3.1			BE882328	ANGEL2	chr1	213166638	-	PAPOLA	chr14	96988526	-
3UTR-intron	ENST00000284292	ENST00000529163		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000284292	ENST00000394920		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000284292	ENST00000527914		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000284292	ENST00000262584		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000284292	ENST00000528957		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000412681	ENST00000529163		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000412681	ENST00000394920		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000412681	ENST00000527914		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000412681	ENST00000262584		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-intron	ENST00000412681	ENST00000528957		ChiTaRS3.1			BF956598	NRGN	chr11	124616710	-	RPL8	chr8	146017272	-
3UTR-3CDS	ENST00000397843	ENST00000397843		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000397843	ENST00000356641		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000397843	ENST00000532993		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000397843		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000356641		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000356641	ENST00000532993		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000397843		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000356641		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
3UTR-3CDS	ENST00000532993	ENST00000532993		ChiTaRS3.1			AI277148	ARHGEF12	chr11	120358799	+	ARHGEF12	chr11	120327901	+
intron-3CDS	ENST00000344683	ENST00000291386		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000344683	ENST00000359060		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000519480	ENST00000291386		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000519480	ENST00000359060		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000522905	ENST00000291386		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000522905	ENST00000359060		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000521175	ENST00000291386		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
intron-3CDS	ENST00000521175	ENST00000359060		ChiTaRS3.1			BG011718	MCPH1	chr8	6501305	+	SSU72	chr1	1500269	+
3UTR-3CDS	ENST00000392341	ENST00000392341		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000392341	ENST00000582743		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392341	ENST00000584781		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392341	ENST00000392339		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392341	ENST00000581287		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000582743	ENST00000392341		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000582743	ENST00000582743		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000582743	ENST00000584781		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000582743	ENST00000392339		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000582743	ENST00000581287		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-3CDS	ENST00000584781	ENST00000392341		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-3CDS	ENST00000584781	ENST00000582743		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-intron	ENST00000584781	ENST00000584781		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-intron	ENST00000584781	ENST00000392339		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-intron	ENST00000584781	ENST00000581287		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000392339	ENST00000392341		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000392339	ENST00000582743		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392339	ENST00000584781		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392339	ENST00000392339		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000392339	ENST00000581287		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000581287	ENST00000392341		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-3CDS	ENST00000581287	ENST00000582743		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000581287	ENST00000584781		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000581287	ENST00000392339		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
3UTR-intron	ENST00000581287	ENST00000581287		ChiTaRS3.1			CB530028	SLC16A3	chr17	80196884	-	SLC16A3	chr17	80195530	+
intron-3UTR	ENST00000317551	ENST00000317551		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-3UTR	ENST00000317551	ENST00000422340		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-intron	ENST00000317551	ENST00000547852		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-3UTR	ENST00000422340	ENST00000317551		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-3UTR	ENST00000422340	ENST00000422340		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-intron	ENST00000422340	ENST00000547852		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-3UTR	ENST00000547852	ENST00000317551		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-3UTR	ENST00000547852	ENST00000422340		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-intron	ENST00000547852	ENST00000547852		ChiTaRS3.1			BE936718	CERS5	chr12	50524046	+	CERS5	chr12	50524302	-
intron-5UTR	ENST00000452825	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000452825	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375401	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375401	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000404049	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000404049	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375379	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375379	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375383	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000375383	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000465402	ENST00000445755		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-5UTR	ENST00000465402	ENST00000597436		ChiTaRS3.1			BQ947948	KDM5C	chrX	53221815	+	CCDC124	chr19	18047227	+
intron-3CDS	ENST00000302538	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000302538	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000302538	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000544583	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000544583	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000544583	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000572441	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000572441	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000572441	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000574437	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000574437	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000574437	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000291107	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000291107	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000291107	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
In-frame	ENST00000543210	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
In-frame	ENST00000543210	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
5CDS-intron	ENST00000543210	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000536794	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000536794	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000536794	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000573895	ENST00000302538		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000573895	ENST00000544583		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000572441		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000574437		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000291107		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000543210		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000536794		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-intron	ENST00000573895	ENST00000573895		ChiTaRS3.1			BF950788	ABR	chr17	909295	+	ABR	chr17	912986	-
intron-3CDS	ENST00000375734	ENST00000532636		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000375734	ENST00000533540		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000453788		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000534624		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000227378		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000534319		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000526110		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000375734	ENST00000526862		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000263895	ENST00000532636		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000263895	ENST00000533540		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000453788		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000534624		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000227378		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000534319		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000526110		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000263895	ENST00000526862		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000409557	ENST00000532636		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000409557	ENST00000533540		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000453788		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000534624		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000227378		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000534319		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000526110		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000409557	ENST00000526862		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000472416	ENST00000532636		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-3CDS	ENST00000472416	ENST00000533540		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000453788		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000534624		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000227378		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000534319		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000526110		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000472416	ENST00000526862		ChiTaRS3.1			BF154448	RND3	chr2	151335355	-	HSPA8	chr11	122928556	-
intron-intron	ENST00000330852	ENST00000267485		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
intron-intron	ENST00000330852	ENST00000334342		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
intron-intron	ENST00000288723	ENST00000267485		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
intron-intron	ENST00000288723	ENST00000334342		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
intron-intron	ENST00000338176	ENST00000267485		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
intron-intron	ENST00000338176	ENST00000334342		ChiTaRS3.1			BM721428	RAB28	chr4	13405276	-	C14orf37	chr14	58719167	+
In-frame	ENST00000533760	ENST00000533760		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000533760	ENST00000397957		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000533760	ENST00000316851		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-intron	ENST00000533760	ENST00000401611		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
3UTR-3CDS	ENST00000397957	ENST00000533760		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
3UTR-3UTR	ENST00000397957	ENST00000397957		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
3UTR-3UTR	ENST00000397957	ENST00000316851		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
3UTR-intron	ENST00000397957	ENST00000401611		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
In-frame	ENST00000316851	ENST00000533760		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000316851	ENST00000397957		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000316851	ENST00000316851		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
5CDS-intron	ENST00000316851	ENST00000401611		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
intron-3CDS	ENST00000401611	ENST00000533760		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
intron-3UTR	ENST00000401611	ENST00000397957		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
intron-3UTR	ENST00000401611	ENST00000316851		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
intron-intron	ENST00000401611	ENST00000401611		ChiTaRS3.1			W27168	NCAM1	chr11	113126663	-	NCAM1	chr11	113130891	+
intron-intron	ENST00000263398	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000263398	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526025	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000449691	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000360158	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000415148	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000437706	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433354	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000428726	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000526669	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000433892	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000278386	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000434472	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000352818	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000263398		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000526025		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000449691		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000360158		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000415148		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000437706		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000433354		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000428726		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000526669		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000433892		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000278386		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000434472		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000352818		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000528922	ENST00000528922		ChiTaRS3.1			AW580058	CD44	chr11	35222883	-	CD44	chr11	35223063	+
intron-intron	ENST00000228284	ENST00000228284		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000228284	ENST00000431469		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000228284	ENST00000552221		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000228284	ENST00000546611		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000431469	ENST00000228284		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000431469	ENST00000431469		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000431469	ENST00000552221		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000431469	ENST00000546611		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000552221	ENST00000228284		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000552221	ENST00000431469		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000552221	ENST00000552221		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000552221	ENST00000546611		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000546611	ENST00000228284		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000546611	ENST00000431469		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000546611	ENST00000552221		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-intron	ENST00000546611	ENST00000546611		ChiTaRS3.1			AA729648	SART3	chr12	108916280	-	SART3	chr12	108916320	+
intron-3UTR	ENST00000418089	ENST00000265340		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000418089	ENST00000506438		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000413720	ENST00000265340		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000413720	ENST00000506438		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000367536	ENST00000265340		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000367536	ENST00000506438		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000367535	ENST00000265340		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000367535	ENST00000506438		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000469280	ENST00000265340		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
intron-3UTR	ENST00000469280	ENST00000506438		ChiTaRS3.1			AA872098	NCF2	chr1	183524996	+	PITX1	chr5	134364340	-
3UTR-3UTR	ENST00000265769	ENST00000265769		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
3UTR-intron	ENST00000265769	ENST00000540823		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
3UTR-intron	ENST00000265769	ENST00000397649		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
3UTR-intron	ENST00000265769	ENST00000437154		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
3UTR-intron	ENST00000265769	ENST00000518516		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-3UTR	ENST00000540823	ENST00000265769		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000540823	ENST00000540823		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000540823	ENST00000397649		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000540823	ENST00000437154		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000540823	ENST00000518516		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-3UTR	ENST00000397649	ENST00000265769		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000397649	ENST00000540823		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000397649	ENST00000397649		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000397649	ENST00000437154		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000397649	ENST00000518516		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-3UTR	ENST00000437154	ENST00000265769		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000437154	ENST00000540823		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000437154	ENST00000397649		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000437154	ENST00000437154		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000437154	ENST00000518516		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-3UTR	ENST00000518516	ENST00000265769		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000518516	ENST00000540823		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000518516	ENST00000397649		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000518516	ENST00000437154		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
intron-intron	ENST00000518516	ENST00000518516		ChiTaRS3.1			BU676798	ADAM28	chr8	24212076	-	ADAM28	chr8	24212011	+
5CDS-intron	ENST00000393829	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000393829	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000546249	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000537728	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000264649	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000585525	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000343619	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-intron	ENST00000544137	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000277551		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371372		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000277549		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371363		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371355		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371357		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000277550		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371367		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000545473		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
intron-intron	ENST00000587797	ENST00000371365		ChiTaRS3.1			BF947308	ATP6V0A1	chr17	40666389	-	CACNA1B	chr9	140811198	+
5CDS-3UTR	ENST00000222254	ENST00000379887		ChiTaRS3.1			BG545738	PIK3R2	chr19	18279560	+	ARIH1	chr15	72877991	+
5CDS-intron	ENST00000222254	ENST00000562891		ChiTaRS3.1			BG545738	PIK3R2	chr19	18279560	+	ARIH1	chr15	72877991	+
5CDS-3UTR	ENST00000593731	ENST00000379887		ChiTaRS3.1			BG545738	PIK3R2	chr19	18279560	+	ARIH1	chr15	72877991	+
5CDS-intron	ENST00000593731	ENST00000562891		ChiTaRS3.1			BG545738	PIK3R2	chr19	18279560	+	ARIH1	chr15	72877991	+
5CDS-intron	ENST00000545708	ENST00000458659		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000545708	ENST00000501704		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000545708	ENST00000261489		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-5UTR	ENST00000545708	ENST00000460842		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000540243	ENST00000458659		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000540243	ENST00000501704		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000540243	ENST00000261489		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-5UTR	ENST00000540243	ENST00000460842		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370298	ENST00000458659		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370298	ENST00000501704		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370298	ENST00000261489		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-5UTR	ENST00000370298	ENST00000460842		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
3UTR-intron	ENST00000471953	ENST00000458659		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
3UTR-intron	ENST00000471953	ENST00000501704		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
3UTR-intron	ENST00000471953	ENST00000261489		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
3UTR-5UTR	ENST00000471953	ENST00000460842		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370303	ENST00000458659		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370303	ENST00000501704		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-intron	ENST00000370303	ENST00000261489		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
5CDS-5UTR	ENST00000370303	ENST00000460842		ChiTaRS3.1			AI793298	MTF2	chr1	93602396	-	TSC22D1	chr13	45112858	+
intron-intron	ENST00000518164	ENST00000518164		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000518164	ENST00000521291		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000518164	ENST00000396070		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000518164	ENST00000287038		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000518164	ENST00000523172		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000521291	ENST00000518164		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000521291	ENST00000521291		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000521291	ENST00000396070		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000521291	ENST00000287038		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000521291	ENST00000523172		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000396070	ENST00000518164		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000396070	ENST00000521291		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000396070	ENST00000396070		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000396070	ENST00000287038		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000396070	ENST00000523172		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000287038	ENST00000518164		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000287038	ENST00000521291		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000287038	ENST00000396070		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000287038	ENST00000287038		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000287038	ENST00000523172		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000523172	ENST00000518164		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000523172	ENST00000521291		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000523172	ENST00000396070		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000523172	ENST00000287038		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000523172	ENST00000523172		ChiTaRS3.1			BU608418	RPL30	chr8	99054011	+	RPL30	chr8	99054939	-
intron-intron	ENST00000347132	ENST00000384756		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000364799		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000384693		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000383926		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000516331		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000384706		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000363981		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000384147		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000347132	ENST00000365607		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000384756		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000364799		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000384693		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000383926		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000516331		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000384706		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000363981		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000384147		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000509682	ENST00000365607		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000384756		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000364799		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000384693		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000383926		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000516331		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000384706		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000363981		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000384147		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
intron-intron	ENST00000506017	ENST00000365607		ChiTaRS3.1			CN337008	KCNQ4	chr1	41258706	+	SNHG1	chr11	62619570	+
Frame-shit	ENST00000400590	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000400590	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000400590	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000320220	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000320220	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000382466	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000382466	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-3CDS	ENST00000542645	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5UTR-intron	ENST00000542645	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000415724	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000415724	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
Frame-shit	ENST00000422251	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
5CDS-intron	ENST00000422251	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000433372		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000331145		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000395759		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000494731	ENST00000325278		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-intron	ENST00000494731	ENST00000461101		ChiTaRS3.1			AX794778	ZDHHC20	chr13	22033193	-	MTHFD2L	chr4	75065511	+
intron-3CDS	ENST00000271348	ENST00000271348		ChiTaRS3.1			BQ369048	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000271348	ENST00000369237		ChiTaRS3.1			BQ369048	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000369237	ENST00000271348		ChiTaRS3.1			BQ369048	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-3CDS	ENST00000369237	ENST00000369237		ChiTaRS3.1			BQ369048	GJA5	chr1	147230504	+	GJA5	chr1	147230936	-
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000445143		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000426650		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BE079888	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000427482	ENST00000427442		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000427482	ENST00000418998		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000427482	ENST00000444063		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000427482	ENST00000373135		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000427482	ENST00000373134		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000427482	ENST00000457824		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000535412	ENST00000427442		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000535412	ENST00000418998		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000535412	ENST00000444063		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000535412	ENST00000373135		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000535412	ENST00000373134		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000535412	ENST00000457824		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000324537	ENST00000427442		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000324537	ENST00000418998		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000324537	ENST00000444063		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000324537	ENST00000373135		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000324537	ENST00000373134		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000324537	ENST00000457824		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000434347	ENST00000427442		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000434347	ENST00000418998		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000434347	ENST00000444063		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000434347	ENST00000373135		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000434347	ENST00000373134		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000434347	ENST00000457824		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000564054	ENST00000427442		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000564054	ENST00000418998		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000564054	ENST00000444063		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-5UTR	ENST00000564054	ENST00000373135		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000564054	ENST00000373134		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000564054	ENST00000457824		ChiTaRS3.1			U89358	SH3GL3	chr15	84255030	-	L3MBTL1	chr20	42143074	+
intron-intron	ENST00000264052	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000264052	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000264052	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409112	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409112	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409112	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000340126	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000340126	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000340126	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000427101	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000427101	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000427101	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409824	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409824	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409824	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409341	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409341	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409341	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000341950	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000341950	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000341950	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409897	ENST00000375375		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409897	ENST00000420770		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000409897	ENST00000400661		ChiTaRS3.1			AA528778	SP100	chr2	231322685	-	PAX7	chr1	19050230	+
intron-intron	ENST00000379561	ENST00000374706		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000379561	ENST00000265375		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000379561	ENST00000339497		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000379561	ENST00000374704		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000379561	ENST00000492478		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000473775	ENST00000374706		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000473775	ENST00000265375		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000473775	ENST00000339497		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000473775	ENST00000374704		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000473775	ENST00000492478		ChiTaRS3.1			BE767398	FOXO1	chr13	41134907	+	CCNY	chr10	35557532	-
intron-intron	ENST00000466387	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000466387	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496558	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000361291	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000402739	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000540488	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000541047	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000343114	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000496251	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000466387		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000496558		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000361291		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000402739		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000540488		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000541047		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000343114		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000496251		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
intron-intron	ENST00000409266	ENST00000409266		ChiTaRS3.1			BI430528	CTNNA2	chr2	80222663	+	CTNNA2	chr2	80221319	+
3UTR-3CDS	ENST00000393203	ENST00000393203		ChiTaRS3.1			AW630858	PTGFRN	chr1	117529754	+	PTGFRN	chr1	117491975	+
3UTR-intron	ENST00000393203	ENST00000496699		ChiTaRS3.1			AW630858	PTGFRN	chr1	117529754	+	PTGFRN	chr1	117491975	+
intron-3CDS	ENST00000496699	ENST00000393203		ChiTaRS3.1			AW630858	PTGFRN	chr1	117529754	+	PTGFRN	chr1	117491975	+
intron-intron	ENST00000496699	ENST00000496699		ChiTaRS3.1			AW630858	PTGFRN	chr1	117529754	+	PTGFRN	chr1	117491975	+
intron-intron	ENST00000494598	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000494598	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000494598	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000494598	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000460012	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000460012	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000460012	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000460012	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000447496	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000447496	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000447496	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000447496	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000340059	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000340059	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000340059	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000340059	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000414191	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000414191	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000414191	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000414191	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000334686	ENST00000553780		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000334686	ENST00000554866		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-5UTR	ENST00000334686	ENST00000329597		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-intron	ENST00000334686	ENST00000554276		ChiTaRS3.1			DB035358	PLCH1	chr3	155393829	-	SERPINA5	chr14	95047806	+
intron-3CDS	ENST00000397410	ENST00000425967		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000397091		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000447712		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000341462		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000532791		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000397113		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000356207		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000335922		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000326324		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000397410	ENST00000397103		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000397410	ENST00000397108		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000397410	ENST00000496629		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-3CDS	ENST00000595465	ENST00000425967		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000397091		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000447712		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000341462		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000532791		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000397113		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000356207		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000335922		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000326324		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000595465	ENST00000397103		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595465	ENST00000397108		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000595465	ENST00000496629		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-3CDS	ENST00000595879	ENST00000425967		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000397091		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000447712		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000341462		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000532791		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000397113		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000356207		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000335922		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000326324		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000595879	ENST00000397103		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-5UTR	ENST00000595879	ENST00000397108		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000595879	ENST00000496629		ChiTaRS3.1			BP285818	AKAP8L	chr19	15514310	-	FGFR1	chr8	38315044	-
intron-intron	ENST00000370092	ENST00000420908		ChiTaRS3.1			BC008758	IDH3G	chrX	153059836	+	UBE2Q2P2	chr15	82665101	-
intron-intron	ENST00000217901	ENST00000420908		ChiTaRS3.1			BC008758	IDH3G	chrX	153059836	+	UBE2Q2P2	chr15	82665101	-
intron-intron	ENST00000370093	ENST00000420908		ChiTaRS3.1			BC008758	IDH3G	chrX	153059836	+	UBE2Q2P2	chr15	82665101	-
intron-intron	ENST00000427365	ENST00000420908		ChiTaRS3.1			BC008758	IDH3G	chrX	153059836	+	UBE2Q2P2	chr15	82665101	-
intron-intron	ENST00000497043	ENST00000420908		ChiTaRS3.1			BC008758	IDH3G	chrX	153059836	+	UBE2Q2P2	chr15	82665101	-
intron-intron	ENST00000576599	ENST00000576599		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000576599	ENST00000320865		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000576599	ENST00000571954		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000320865	ENST00000576599		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000320865	ENST00000320865		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000320865	ENST00000571954		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000571954	ENST00000576599		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000571954	ENST00000320865		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000571954	ENST00000571954		ChiTaRS3.1			AW063448	B3GNTL1	chr17	80943841	+	B3GNTL1	chr17	80944363	-
intron-intron	ENST00000256637	ENST00000314499		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000256637	ENST00000464503		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000256637	ENST00000342316		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000256637	ENST00000409420		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000538502	ENST00000314499		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000538502	ENST00000464503		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000538502	ENST00000342316		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000538502	ENST00000409420		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000482236	ENST00000314499		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000482236	ENST00000464503		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000482236	ENST00000342316		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
intron-intron	ENST00000482236	ENST00000409420		ChiTaRS3.1			BX115008	SORT1	chr1	109936954	-	CSRNP3	chr2	166666476	-
5CDS-3UTR	ENST00000367549	ENST00000502346		ChiTaRS3.1			BE161368	DHX9	chr1	182853780	-	TMEM167A	chr5	82350337	-
5CDS-5UTR	ENST00000367549	ENST00000511450		ChiTaRS3.1			BE161368	DHX9	chr1	182853780	-	TMEM167A	chr5	82350337	-
3UTR-3UTR	ENST00000485081	ENST00000502346		ChiTaRS3.1			BE161368	DHX9	chr1	182853780	-	TMEM167A	chr5	82350337	-
3UTR-5UTR	ENST00000485081	ENST00000511450		ChiTaRS3.1			BE161368	DHX9	chr1	182853780	-	TMEM167A	chr5	82350337	-
intron-3CDS	ENST00000396360	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000396360	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000396360	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000435032	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000435032	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000435032	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000290317	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000290317	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000290317	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000279027	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000279027	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000279027	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000472148	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000472148	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000472148	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000413164	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000413164	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000413164	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000495082	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000495082	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000495082	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000372121	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000372121	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000372121	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000464518	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000464518	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000464518	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000417157	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000417157	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000417157	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3CDS	ENST00000339636	ENST00000244230		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000339636	ENST00000498451		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-intron	ENST00000339636	ENST00000468427		ChiTaRS3.1			BE160828	SLC13A3	chr20	45260144	+	MPHOSPH10	chr2	71368364	+
intron-3UTR	ENST00000256682	ENST00000256682		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000447318		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000541959		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000256682	ENST00000541967		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000447318	ENST00000256682		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000447318		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000541959		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000447318	ENST00000541967		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000541959	ENST00000256682		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000447318		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000541959		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541959	ENST00000541967		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-3UTR	ENST00000541967	ENST00000256682		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000447318		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000541959		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000541967	ENST00000541967		ChiTaRS3.1			AA525008	ARF3	chr12	49331604	-	ARF3	chr12	49331514	+
intron-intron	ENST00000553127	ENST00000553127		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000553127	ENST00000321898		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000553127	ENST00000552918		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000553127	ENST00000547865		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000553127	ENST00000552557		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000321898	ENST00000553127		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000321898	ENST00000321898		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000321898	ENST00000552918		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000321898	ENST00000547865		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000321898	ENST00000552557		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552918	ENST00000553127		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552918	ENST00000321898		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552918	ENST00000552918		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552918	ENST00000547865		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552918	ENST00000552557		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000547865	ENST00000553127		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000547865	ENST00000321898		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000547865	ENST00000552918		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000547865	ENST00000547865		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000547865	ENST00000552557		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552557	ENST00000553127		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552557	ENST00000321898		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552557	ENST00000552918		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552557	ENST00000547865		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000552557	ENST00000552557		ChiTaRS3.1			AW368428	SPATS2	chr12	49868187	-	SPATS2	chr12	49867628	+
intron-intron	ENST00000566780	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000566780	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000406884	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000539474	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000402655	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000408984	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000355860	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000565791	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000566780		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000406884		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000539474		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000402655		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000408984		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000355860		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000565791		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
intron-intron	ENST00000569818	ENST00000569818		ChiTaRS3.1			AW803508	WWOX	chr16	78965025	-	WWOX	chr16	78965266	+
Frame-shit	ENST00000426820	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000426820	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
intron-3CDS	ENST00000369559	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
intron-3UTR	ENST00000369559	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369554	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369554	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000369558	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369558	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000369561	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369561	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369555	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369555	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
In-frame	ENST00000340480	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000340480	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000369553	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000369553	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
Frame-shit	ENST00000406344	ENST00000246337		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
5CDS-3UTR	ENST00000406344	ENST00000494399		ChiTaRS3.1			BE772548	HIPK1	chr1	114515938	-	UROD	chr1	45480619	+
intron-intron	ENST00000450966	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000450966	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000450966	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000450966	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000450966	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000450966	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000251722	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000251722	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000251722	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000251722	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000251722	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000251722	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000427112	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000427112	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000427112	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000427112	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000427112	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000427112	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000496298	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000496298	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000496298	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000496298	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000496298	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000496298	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000409945	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000409945	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000409945	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000409945	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000409945	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000409945	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000443711	ENST00000418930		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000443711	ENST00000256117		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000443711	ENST00000416274		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-3UTR	ENST00000443711	ENST00000519128		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000443711	ENST00000517476		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000443711	ENST00000521429		ChiTaRS3.1			BG995978	USP40	chr2	234384235	-	E2F5	chr8	86125892	+
intron-intron	ENST00000261483	ENST00000328405		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
intron-intron	ENST00000261483	ENST00000475063		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
intron-intron	ENST00000261483	ENST00000537696		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
intron-intron	ENST00000505313	ENST00000328405		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
intron-intron	ENST00000505313	ENST00000475063		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
intron-intron	ENST00000505313	ENST00000537696		ChiTaRS3.1			AI474018	MAN2A1	chr5	109194057	-	KCNH8	chr3	19390709	-
3UTR-3UTR	ENST00000253925	ENST00000253925		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
3UTR-intron	ENST00000253925	ENST00000389547		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
3UTR-3UTR	ENST00000253925	ENST00000530548		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
intron-3UTR	ENST00000389547	ENST00000253925		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
intron-intron	ENST00000389547	ENST00000389547		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
intron-3UTR	ENST00000389547	ENST00000530548		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
3UTR-3UTR	ENST00000530548	ENST00000253925		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
3UTR-intron	ENST00000530548	ENST00000389547		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
3UTR-3UTR	ENST00000530548	ENST00000530548		ChiTaRS3.1			AA730788	PPFIA1	chr11	70230069	+	PPFIA1	chr11	70230005	-
intron-intron	ENST00000399537	ENST00000320717		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399537	ENST00000338435		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399537	ENST00000409626		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399537	ENST00000409428		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399537	ENST00000409215		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399537	ENST00000471443		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000320717		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000338435		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000409626		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000409428		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000409215		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000430969	ENST00000471443		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000320717		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000338435		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000409626		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000409428		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000409215		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-intron	ENST00000399434	ENST00000471443		ChiTaRS3.1			BE179808	TNRC18	chr7	5437606	+	GLS	chr2	191762328	-
intron-3CDS	ENST00000399497	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000399497	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000399497	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000399497	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000399497	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000399497	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000286733	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000286733	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000286733	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000286733	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000286733	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000286733	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000511606	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000511606	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000511606	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000511606	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000511606	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000511606	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000507956	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000507956	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507956	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507956	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507956	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507956	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000505594	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000505594	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000505594	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000505594	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000505594	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000505594	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000507187	ENST00000399497		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-3CDS	ENST00000507187	ENST00000286733		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507187	ENST00000511606		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507187	ENST00000507956		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507187	ENST00000505594		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000507187	ENST00000507187		ChiTaRS3.1			BG164058	NAAA	chr4	76838875	-	NAAA	chr4	76857318	-
intron-intron	ENST00000345330	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000345330	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000351217	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000542234	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000562924	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000563691	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000545878	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000287226	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000345330		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000351217		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000542234		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000562924		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000563691		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000545878		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000287226		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
intron-intron	ENST00000564551	ENST00000564551		ChiTaRS3.1			CV338298	NPTN	chr15	73887593	+	NPTN	chr15	73887660	-
3UTR-3CDS	ENST00000216492	ENST00000216492		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
3UTR-intron	ENST00000216492	ENST00000334654		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
3UTR-3UTR	ENST00000216492	ENST00000553866		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
3UTR-3CDS	ENST00000334654	ENST00000216492		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
3UTR-intron	ENST00000334654	ENST00000334654		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
3UTR-3UTR	ENST00000334654	ENST00000553866		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
intron-3CDS	ENST00000553866	ENST00000216492		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
intron-intron	ENST00000553866	ENST00000334654		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
intron-3UTR	ENST00000553866	ENST00000553866		ChiTaRS3.1			AA972248	CHGA	chr14	93401518	-	CHGA	chr14	93397918	+
5CDS-intron	ENST00000252699	ENST00000607797		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000606233		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000606739		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000510254		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000607831		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000606165		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000606188		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000607195		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000607112		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000606696		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000504474		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000507963		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000252699	ENST00000513055		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000607797		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000606233		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000606739		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000510254		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000607831		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000606165		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000606188		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000607195		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000607112		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000606696		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000504474		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000507963		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000424234	ENST00000513055		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000607797		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000606233		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000606739		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000510254		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000607831		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000606165		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000606188		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000607195		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000607112		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000606696		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000504474		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000507963		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000390009	ENST00000513055		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000607797		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000606233		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000606739		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000510254		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000607831		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000606165		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000606188		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000607195		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000607112		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000606696		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000504474		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000507963		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
intron-intron	ENST00000497637	ENST00000513055		ChiTaRS3.1			BF088388	ACTN4	chr19	39216418	+	NR2F1-AS1	chr5	92871102	+
5CDS-intron	ENST00000361367	ENST00000419821		ChiTaRS3.1			AW903428	CTR9	chr11	10800270	-	TAOK3	chr12	118688605	-
5CDS-intron	ENST00000361367	ENST00000392533		ChiTaRS3.1			AW903428	CTR9	chr11	10800270	-	TAOK3	chr12	118688605	-
5CDS-intron	ENST00000361367	ENST00000537952		ChiTaRS3.1			AW903428	CTR9	chr11	10800270	-	TAOK3	chr12	118688605	-
5CDS-intron	ENST00000361367	ENST00000543709		ChiTaRS3.1			AW903428	CTR9	chr11	10800270	-	TAOK3	chr12	118688605	-
5CDS-intron	ENST00000361367	ENST00000536979		ChiTaRS3.1			AW903428	CTR9	chr11	10800270	-	TAOK3	chr12	118688605	-
intron-3UTR	ENST00000425792	ENST00000373715		ChiTaRS3.1			BF173958	UBE2E2	chr3	23306906	+	SRSF3	chr6	36571114	+
intron-intron	ENST00000425792	ENST00000339436		ChiTaRS3.1			BF173958	UBE2E2	chr3	23306906	+	SRSF3	chr6	36571114	+
intron-3UTR	ENST00000396703	ENST00000373715		ChiTaRS3.1			BF173958	UBE2E2	chr3	23306906	+	SRSF3	chr6	36571114	+
intron-intron	ENST00000396703	ENST00000339436		ChiTaRS3.1			BF173958	UBE2E2	chr3	23306906	+	SRSF3	chr6	36571114	+
In-frame	ENST00000288078	ENST00000328111		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000288078	ENST00000348286		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000288078	ENST00000353855		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000288078	ENST00000443239		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000288078	ENST00000344505		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000288078	ENST00000375623		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000288078	ENST00000456297		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000288078	ENST00000201963		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000428974	ENST00000328111		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000428974	ENST00000348286		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000428974	ENST00000353855		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000428974	ENST00000443239		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000428974	ENST00000344505		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000428974	ENST00000375623		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000428974	ENST00000456297		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000428974	ENST00000201963		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-3CDS	ENST00000571514	ENST00000328111		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-3CDS	ENST00000571514	ENST00000348286		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-3CDS	ENST00000571514	ENST00000353855		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-3CDS	ENST00000571514	ENST00000443239		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-3CDS	ENST00000571514	ENST00000344505		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-intron	ENST00000571514	ENST00000375623		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-intron	ENST00000571514	ENST00000456297		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-intron	ENST00000571514	ENST00000201963		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000378912	ENST00000328111		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000378912	ENST00000348286		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000378912	ENST00000353855		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000378912	ENST00000443239		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
In-frame	ENST00000378912	ENST00000344505		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000378912	ENST00000375623		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000378912	ENST00000456297		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
5CDS-intron	ENST00000378912	ENST00000201963		ChiTaRS3.1			DB451208	FUK	chr16	70497624	+	DNMT3B	chr20	31390240	+
intron-intron	ENST00000398907	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398907	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398907	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398907	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398907	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398907	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398905	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000288319	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398897	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398911	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398910	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000417133	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000442448	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000453032	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000398919	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000429727	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000258761		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000433922		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000432311		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000452975		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000405202		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000485493	ENST00000407633		ChiTaRS3.1			BF987118	ERG	chr21	39791954	-	BZW2	chr7	16725510	-
intron-intron	ENST00000379242	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379242	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000389975	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000457137	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000497382	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000404084	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000379241	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000379242		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000389975		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000457137		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000497382		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000404084		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000379241		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-intron	ENST00000401530	ENST00000401530		ChiTaRS3.1			DW429948	VIT	chr2	36925607	+	VIT	chr2	36925139	+
intron-3CDS	ENST00000599470	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3CDS	ENST00000599470	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3UTR	ENST00000599470	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000321944	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000321944	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000321944	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000358301	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000358301	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000358301	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3CDS	ENST00000597766	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3CDS	ENST00000597766	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3UTR	ENST00000597766	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000593690	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000593690	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000593690	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000599386	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000599386	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000599386	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000435673	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000435673	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000435673	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000360442	ENST00000597629		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3CDS	ENST00000360442	ENST00000248673		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
3UTR-3UTR	ENST00000360442	ENST00000594045		ChiTaRS3.1			BF511918	PAK4	chr19	39669996	-	ZFP36	chr19	39898778	-
intron-3UTR	ENST00000546309	ENST00000280557		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000546309	ENST00000455982		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000397244	ENST00000280557		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000397244	ENST00000455982		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000388870	ENST00000280557		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000388870	ENST00000455982		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000297792	ENST00000280557		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
intron-3UTR	ENST00000297792	ENST00000455982		ChiTaRS3.1			BC012148	KDM1B	chr6	18205966	+	DENR	chr12	123254301	+
Frame-shit	ENST00000527985	ENST00000527985		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000527985	ENST00000287169		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
5CDS-intron	ENST00000527985	ENST00000527090		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000287169	ENST00000527985		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000287169	ENST00000287169		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
5CDS-intron	ENST00000287169	ENST00000527090		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-3CDS	ENST00000527090	ENST00000527985		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-3CDS	ENST00000527090	ENST00000287169		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-intron	ENST00000527090	ENST00000527090		ChiTaRS3.1			BX119008	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
In-frame	ENST00000397722	ENST00000322723		ChiTaRS3.1			BF591148	NME4	chr16	450281	-	NCL	chr2	232321395	+
In-frame	ENST00000382940	ENST00000322723		ChiTaRS3.1			BF591148	NME4	chr16	450281	-	NCL	chr2	232321395	+
Frame-shit	ENST00000219479	ENST00000322723		ChiTaRS3.1			BF591148	NME4	chr16	450281	-	NCL	chr2	232321395	+
In-frame	ENST00000450036	ENST00000322723		ChiTaRS3.1			BF591148	NME4	chr16	450281	-	NCL	chr2	232321395	+
intron-5UTR	ENST00000269214	ENST00000269214		ChiTaRS3.1			CA312668	ESCO1	chr18	19154760	+	ESCO1	chr18	19164339	-
intron-intron	ENST00000269214	ENST00000580101		ChiTaRS3.1			CA312668	ESCO1	chr18	19154760	+	ESCO1	chr18	19164339	-
intron-5UTR	ENST00000580101	ENST00000269214		ChiTaRS3.1			CA312668	ESCO1	chr18	19154760	+	ESCO1	chr18	19164339	-
intron-intron	ENST00000580101	ENST00000580101		ChiTaRS3.1			CA312668	ESCO1	chr18	19154760	+	ESCO1	chr18	19164339	-
In-frame	ENST00000327381	ENST00000355849		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
5CDS-intron	ENST00000327381	ENST00000520981		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
5CDS-intron	ENST00000327381	ENST00000522578		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
intron-3CDS	ENST00000518261	ENST00000355849		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
intron-intron	ENST00000518261	ENST00000520981		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
intron-intron	ENST00000518261	ENST00000522578		ChiTaRS3.1			BC106028	XKR4	chr8	56015855	+	KHDRBS3	chr8	136594119	+
Frame-shit	ENST00000375772	ENST00000375772		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375772	ENST00000375722		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375772	ENST00000326587		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375772	ENST00000375695		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
5CDS-3UTR	ENST00000375772	ENST00000494718		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375722	ENST00000375772		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375722	ENST00000375722		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375722	ENST00000326587		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375722	ENST00000375695		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
5CDS-3UTR	ENST00000375722	ENST00000494718		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000326587	ENST00000375772		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000326587	ENST00000375722		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000326587	ENST00000326587		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000326587	ENST00000375695		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
5CDS-3UTR	ENST00000326587	ENST00000494718		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375695	ENST00000375772		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375695	ENST00000375722		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375695	ENST00000326587		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
Frame-shit	ENST00000375695	ENST00000375695		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
5CDS-3UTR	ENST00000375695	ENST00000494718		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
3UTR-3CDS	ENST00000494718	ENST00000375772		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
3UTR-3CDS	ENST00000494718	ENST00000375722		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
3UTR-3CDS	ENST00000494718	ENST00000326587		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
3UTR-3CDS	ENST00000494718	ENST00000375695		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
3UTR-3UTR	ENST00000494718	ENST00000494718		ChiTaRS3.1			BU675238	MAGED1	chrX	51645002	-	MAGED1	chrX	51644812	+
5CDS-intron	ENST00000440884	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000440884	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000416682	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000416682	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000429436	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000429436	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000303622	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000303622	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000216288	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000216288	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000553942	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000553942	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000335102	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
5CDS-intron	ENST00000335102	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
3UTR-intron	ENST00000561071	ENST00000241052		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
3UTR-intron	ENST00000561071	ENST00000534710		ChiTaRS3.1			BI022068	MARK3	chr14	103958203	-	CAT	chr11	34480167	+
intron-intron	ENST00000474528	ENST00000249647		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000474528	ENST00000566141		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000474528	ENST00000564153		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000474528	ENST00000349777		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000474528	ENST00000567094		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000474528	ENST00000397138		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000249647		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000566141		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000564153		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000349777		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000567094		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000272433	ENST00000397138		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000249647		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000566141		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000564153		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000349777		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000567094		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-intron	ENST00000410065	ENST00000397138		ChiTaRS3.1			BE843148	SFXN5	chr2	73273013	+	SNAP23	chr15	42807832	-
intron-3CDS	ENST00000296181	ENST00000296181		ChiTaRS3.1			BQ423878	ITGB5	chr3	124515401	+	ITGB5	chr3	124515353	-
intron-intron	ENST00000296181	ENST00000461306		ChiTaRS3.1			BQ423878	ITGB5	chr3	124515401	+	ITGB5	chr3	124515353	-
intron-3CDS	ENST00000461306	ENST00000296181		ChiTaRS3.1			BQ423878	ITGB5	chr3	124515401	+	ITGB5	chr3	124515353	-
intron-intron	ENST00000461306	ENST00000461306		ChiTaRS3.1			BQ423878	ITGB5	chr3	124515401	+	ITGB5	chr3	124515353	-
intron-intron	ENST00000355683	ENST00000579585		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000584573		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000361733		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000361357		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000577395		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000355683	ENST00000577784		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000579585		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000584573		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000361733		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000361357		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000577395		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000357479	ENST00000577784		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000579585		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000584573		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000361733		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000361357		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000577395		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-intron	ENST00000366206	ENST00000577784		ChiTaRS3.1			AV655638	STRN3	chr14	31487938	-	MAP3K3	chr17	61748907	+
intron-3UTR	ENST00000264538	ENST00000264538		ChiTaRS3.1			BF851038	IFT57	chr3	107881377	-	IFT57	chr3	107881261	+
intron-intron	ENST00000264538	ENST00000468021		ChiTaRS3.1			BF851038	IFT57	chr3	107881377	-	IFT57	chr3	107881261	+
intron-3UTR	ENST00000468021	ENST00000264538		ChiTaRS3.1			BF851038	IFT57	chr3	107881377	-	IFT57	chr3	107881261	+
intron-intron	ENST00000468021	ENST00000468021		ChiTaRS3.1			BF851038	IFT57	chr3	107881377	-	IFT57	chr3	107881261	+
intron-intron	ENST00000357037	ENST00000369831		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-intron	ENST00000357037	ENST00000460717		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-3UTR	ENST00000357037	ENST00000369827		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-intron	ENST00000357037	ENST00000442650		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-intron	ENST00000357037	ENST00000464206		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-3UTR	ENST00000357037	ENST00000241337		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-intron	ENST00000357037	ENST00000414179		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-intron	ENST00000357037	ENST00000369829		ChiTaRS3.1			BG993988	PTRF	chr17	40554682	+	GSTM2	chr1	110217566	-
intron-3UTR	ENST00000400098	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400098	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400098	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400100	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400100	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400100	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400097	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400097	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000400097	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000553597	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000553597	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000553597	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000390687	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000390687	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000390687	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000346403	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000346403	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000346403	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000554227	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000554227	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000554227	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000577565	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000577565	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000577565	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000444203	ENST00000254976		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000444203	ENST00000304886		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-3UTR	ENST00000444203	ENST00000495883		ChiTaRS3.1			BG715348	SNRPN	chr15	25220210	+	SNAP25	chr20	10286958	+
intron-intron	ENST00000333628	ENST00000373795		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
intron-intron	ENST00000333628	ENST00000546138		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
intron-intron	ENST00000333628	ENST00000466448		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
intron-intron	ENST00000489942	ENST00000373795		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
intron-intron	ENST00000489942	ENST00000546138		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
intron-intron	ENST00000489942	ENST00000466448		ChiTaRS3.1			AW956098	TUBB2A	chr6	3154126	+	SRSF4	chr1	29479908	+
Frame-shit	ENST00000328965	ENST00000368911		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
Frame-shit	ENST00000328965	ENST00000323817		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
Frame-shit	ENST00000328965	ENST00000413605		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
5CDS-intron	ENST00000328965	ENST00000497709		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
Frame-shit	ENST00000531220	ENST00000368911		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
Frame-shit	ENST00000531220	ENST00000323817		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
Frame-shit	ENST00000531220	ENST00000413605		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
5CDS-intron	ENST00000531220	ENST00000497709		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
intron-3CDS	ENST00000534735	ENST00000368911		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
intron-3CDS	ENST00000534735	ENST00000323817		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
intron-3CDS	ENST00000534735	ENST00000413605		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
intron-intron	ENST00000534735	ENST00000497709		ChiTaRS3.1			BQ345738	OAF	chr11	120097557	-	CDK19	chr6	110942391	-
intron-3UTR	ENST00000234590	ENST00000234590		ChiTaRS3.1			BQ360948	ENO1	chr1	8921333	+	ENO1	chr1	8921235	-
intron-intron	ENST00000389709	ENST00000389709		ChiTaRS3.1			BM680038	ZXDC	chr3	126178333	+	ZXDC	chr3	126178371	-
intron-intron	ENST00000389709	ENST00000336332		ChiTaRS3.1			BM680038	ZXDC	chr3	126178333	+	ZXDC	chr3	126178371	-
intron-intron	ENST00000336332	ENST00000389709		ChiTaRS3.1			BM680038	ZXDC	chr3	126178333	+	ZXDC	chr3	126178371	-
intron-intron	ENST00000336332	ENST00000336332		ChiTaRS3.1			BM680038	ZXDC	chr3	126178333	+	ZXDC	chr3	126178371	-
intron-intron	ENST00000450735	ENST00000450735		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000450735	ENST00000304231		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000450735	ENST00000399166		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000450735	ENST00000426485		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000450735	ENST00000500334		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000304231	ENST00000450735		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000304231	ENST00000304231		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000304231	ENST00000399166		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000304231	ENST00000426485		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000304231	ENST00000500334		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000399166	ENST00000450735		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000399166	ENST00000304231		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000399166	ENST00000399166		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000399166	ENST00000426485		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000399166	ENST00000500334		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000426485	ENST00000450735		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000426485	ENST00000304231		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000426485	ENST00000399166		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000426485	ENST00000426485		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000426485	ENST00000500334		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000500334	ENST00000450735		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000500334	ENST00000304231		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000500334	ENST00000399166		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000500334	ENST00000426485		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
intron-intron	ENST00000500334	ENST00000500334		ChiTaRS3.1			BE159788	HOMER2	chr15	83646178	+	HOMER2	chr15	83642326	-
5CDS-3UTR	ENST00000396472	ENST00000396472		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-intron	ENST00000396472	ENST00000382406		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-3UTR	ENST00000396472	ENST00000280987		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-intron	ENST00000396472	ENST00000554052		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-3UTR	ENST00000382406	ENST00000396472		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-intron	ENST00000382406	ENST00000382406		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-3UTR	ENST00000382406	ENST00000280987		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-intron	ENST00000382406	ENST00000554052		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-3UTR	ENST00000280987	ENST00000396472		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-intron	ENST00000280987	ENST00000382406		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-3UTR	ENST00000280987	ENST00000280987		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
5CDS-intron	ENST00000280987	ENST00000554052		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-3UTR	ENST00000554052	ENST00000396472		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-intron	ENST00000554052	ENST00000382406		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-3UTR	ENST00000554052	ENST00000280987		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-intron	ENST00000554052	ENST00000554052		ChiTaRS3.1			AA502988	FAM177A1	chr14	35552584	+	FAM177A1	chr14	35552506	-
intron-intron	ENST00000256997	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000256997	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000256997	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529444	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529444	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529444	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000527256	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000527256	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000527256	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000537863	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000537863	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000537863	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000533929	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000533929	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000533929	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000525230	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000525230	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000525230	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000530453	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000530453	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000530453	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000444355	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000444355	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000444355	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529788	ENST00000529829		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529788	ENST00000529979		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
intron-intron	ENST00000529788	ENST00000525578		ChiTaRS3.1			DA582448	ACP2	chr11	47267353	-	MRVI1-AS1	chr11	10590165	-
5CDS-5UTR	ENST00000352140	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000352140	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000352140	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000352140	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000352140	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000352140	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000352140	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000352140	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000352140	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000594404	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000594404	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000594404	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000594404	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000594404	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000594404	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000594404	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000594404	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000594404	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000367376	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000367376	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000367376	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000367376	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000367376	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000367376	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000367376	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000367376	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000367376	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000442510	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000442510	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000442510	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000442510	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000442510	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000442510	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000442510	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000442510	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000442510	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000348564	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000348564	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000348564	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000348564	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000348564	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-5UTR	ENST00000348564	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000348564	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000348564	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
5CDS-intron	ENST00000348564	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000598951	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000598951	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000598951	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000598951	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000598951	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000598951	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000598951	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000598951	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000598951	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000367364	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000367364	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000367364	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000367364	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000367364	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000367364	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000367364	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000367364	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000367364	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000413409	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000413409	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000413409	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000413409	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000413409	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000413409	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000413409	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000413409	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000413409	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000391970	ENST00000352140		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000391970	ENST00000594404		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000391970	ENST00000367376		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000391970	ENST00000442510		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000391970	ENST00000348564		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-5UTR	ENST00000391970	ENST00000598951		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000391970	ENST00000367364		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000391970	ENST00000413409		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000391970	ENST00000391970		ChiTaRS3.1			CD706868	PTPRC	chr1	198725149	+	PTPRC	chr1	198608170	+
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			AW994348	RTN4	chr2	55205329	+	RTN4	chr2	55201048	+
intron-intron	ENST00000405805	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000405805	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000339872	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000341423	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399489	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000399494	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000326004	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000405805		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000339872		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000341423		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000399489		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000399494		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000326004		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-intron	ENST00000468384	ENST00000468384		ChiTaRS3.1			BE154698	HMGB1	chr13	31036243	-	HMGB1	chr13	31035844	+
intron-3CDS	ENST00000296137	ENST00000296137		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-3CDS	ENST00000296137	ENST00000535325		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-intron	ENST00000296137	ENST00000438446		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-3CDS	ENST00000535325	ENST00000296137		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-3CDS	ENST00000535325	ENST00000535325		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-intron	ENST00000535325	ENST00000438446		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-3CDS	ENST00000438446	ENST00000296137		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-3CDS	ENST00000438446	ENST00000535325		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
intron-intron	ENST00000438446	ENST00000438446		ChiTaRS3.1			CT001468	FYCO1	chr3	46007795	-	FYCO1	chr3	46008754	-
3UTR-3UTR	ENST00000320954	ENST00000320954		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
3UTR-intron	ENST00000320954	ENST00000449224		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
3UTR-intron	ENST00000320954	ENST00000485310		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-3UTR	ENST00000449224	ENST00000320954		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-intron	ENST00000449224	ENST00000449224		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-intron	ENST00000449224	ENST00000485310		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-3UTR	ENST00000485310	ENST00000320954		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-intron	ENST00000485310	ENST00000449224		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-intron	ENST00000485310	ENST00000485310		ChiTaRS3.1			BU620648	CRTAP	chr3	33184828	-	CRTAP	chr3	33184753	+
intron-3CDS	ENST00000261772	ENST00000261772		ChiTaRS3.1			AA344178	AARS	chr16	70303644	-	AARS	chr16	70310922	-
intron-intron	ENST00000261772	ENST00000564359		ChiTaRS3.1			AA344178	AARS	chr16	70303644	-	AARS	chr16	70310922	-
intron-3CDS	ENST00000564359	ENST00000261772		ChiTaRS3.1			AA344178	AARS	chr16	70303644	-	AARS	chr16	70310922	-
intron-intron	ENST00000564359	ENST00000564359		ChiTaRS3.1			AA344178	AARS	chr16	70303644	-	AARS	chr16	70310922	-
intron-3CDS	ENST00000295901	ENST00000300850		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000295901	ENST00000394979		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000300850		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000394979		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000300850		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000394979		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000300850		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000394979		ChiTaRS3.1			CD626168	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-intron	ENST00000490126	ENST00000490126		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000490126	ENST00000225410		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000490126	ENST00000588253		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000490126	ENST00000592616		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000490126	ENST00000590858		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000225410	ENST00000490126		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000225410	ENST00000225410		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000225410	ENST00000588253		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000225410	ENST00000592616		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000225410	ENST00000590858		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000588253	ENST00000490126		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000588253	ENST00000225410		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000588253	ENST00000588253		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000588253	ENST00000592616		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000588253	ENST00000590858		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000592616	ENST00000490126		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000592616	ENST00000225410		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000592616	ENST00000588253		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000592616	ENST00000592616		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000592616	ENST00000590858		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000590858	ENST00000490126		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000590858	ENST00000225410		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000590858	ENST00000588253		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000590858	ENST00000592616		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000590858	ENST00000590858		ChiTaRS3.1			AA989438	ZNHIT3	chr17	34852018	+	ZNHIT3	chr17	34851885	-
intron-intron	ENST00000261726	ENST00000261726		ChiTaRS3.1			AA584828	CUX2	chr12	111514338	-	CUX2	chr12	111524046	+
intron-intron	ENST00000261726	ENST00000551604		ChiTaRS3.1			AA584828	CUX2	chr12	111514338	-	CUX2	chr12	111524046	+
intron-intron	ENST00000551604	ENST00000261726		ChiTaRS3.1			AA584828	CUX2	chr12	111514338	-	CUX2	chr12	111524046	+
intron-intron	ENST00000551604	ENST00000551604		ChiTaRS3.1			AA584828	CUX2	chr12	111514338	-	CUX2	chr12	111524046	+
intron-intron	ENST00000341223	ENST00000458381		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000444448		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000317647		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000445023		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397206		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000421711		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397209		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000458381		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000444448		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000317647		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000445023		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397206		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000421711		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397209		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000458381		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000444448		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000317647		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000445023		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397206		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000421711		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397209		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000458381		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000444448		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000317647		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000445023		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397206		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000421711		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397209		ChiTaRS3.1			R06328	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000491145	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
intron-intron	ENST00000395720	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
3UTR-intron	ENST00000357698	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
3UTR-intron	ENST00000380230	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
intron-intron	ENST00000496660	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
intron-intron	ENST00000319580	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
intron-intron	ENST00000395723	ENST00000384994		ChiTaRS3.1			AA910598	ANKDD1A	chr15	65249584	-	NEAT1	chr11	65210170	-
intron-intron	ENST00000264001	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000264001	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000264001	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000264001	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000264001	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000264001	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000362093	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000351137	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000345436	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000417030	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000264001		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000362093		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000351137		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000345436		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000417030		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000563092	ENST00000563092		ChiTaRS3.1			AI375038	CKLF	chr16	66586945	-	CKLF	chr16	66597988	-
intron-intron	ENST00000281171	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000281171	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000348962	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000542557	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544244	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000445537	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000442921	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000543886	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000281171		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000348962		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000542557		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000544244		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000445537		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000442921		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000543886		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-intron	ENST00000544706	ENST00000544706		ChiTaRS3.1			T25328	PTPRO	chr12	15622362	-	PTPRO	chr12	15622548	+
intron-3UTR	ENST00000375110	ENST00000319592		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000375110	ENST00000381793		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000375110	ENST00000381795		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000375110	ENST00000295971		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000375110	ENST00000514014		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000375110	ENST00000515809		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000319778	ENST00000319592		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000319778	ENST00000381793		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000319778	ENST00000381795		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000319778	ENST00000295971		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000319778	ENST00000514014		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000319778	ENST00000515809		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000263062	ENST00000319592		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000263062	ENST00000381793		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000263062	ENST00000381795		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000263062	ENST00000295971		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000263062	ENST00000514014		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000263062	ENST00000515809		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000480402	ENST00000319592		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000480402	ENST00000381793		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-3UTR	ENST00000480402	ENST00000381795		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000480402	ENST00000295971		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000480402	ENST00000514014		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000480402	ENST00000515809		ChiTaRS3.1			BE837418	EPC1	chr10	32560740	-	RBM47	chr4	40425983	+
intron-intron	ENST00000579192	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000579192	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000380067	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000396278	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000581320	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000580340	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000380358		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000358181		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000330494		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-intron	ENST00000577745	ENST00000570758		ChiTaRS3.1			AI658708	SLC25A35	chr17	8193739	+	CHD3	chr17	7793095	-
intron-3UTR	ENST00000331925	ENST00000331925		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000331925	ENST00000573283		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000331925	ENST00000575842		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000331925	ENST00000575087		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000573283	ENST00000331925		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000573283	ENST00000573283		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000573283	ENST00000575842		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000573283	ENST00000575087		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575842	ENST00000331925		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575842	ENST00000573283		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575842	ENST00000575842		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575842	ENST00000575087		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575087	ENST00000331925		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575087	ENST00000573283		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575087	ENST00000575842		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-3UTR	ENST00000575087	ENST00000575087		ChiTaRS3.1			CD240358	ACTG1	chr17	79477083	-	ACTG1	chr17	79477119	+
intron-intron	ENST00000356406	ENST00000356406		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000356406	ENST00000413009		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000356406	ENST00000503233		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000356406	ENST00000515797		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000413009	ENST00000356406		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000413009	ENST00000413009		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000413009	ENST00000503233		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000413009	ENST00000515797		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000503233	ENST00000356406		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000503233	ENST00000413009		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000503233	ENST00000503233		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000503233	ENST00000515797		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000515797	ENST00000356406		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000515797	ENST00000413009		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000515797	ENST00000503233		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
intron-intron	ENST00000515797	ENST00000515797		ChiTaRS3.1			BF990548	ACOX3	chr4	8407532	-	ACOX3	chr4	8411244	-
3UTR-3UTR	ENST00000369306	ENST00000299427		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-3UTR	ENST00000369306	ENST00000533371		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-intron	ENST00000369306	ENST00000534644		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-intron	ENST00000369306	ENST00000528657		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-3UTR	ENST00000537888	ENST00000299427		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-3UTR	ENST00000537888	ENST00000533371		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-intron	ENST00000537888	ENST00000534644		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
3UTR-intron	ENST00000537888	ENST00000528657		ChiTaRS3.1			BF925568	PEX11B	chr1	145523361	-	TPP1	chr11	6634593	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H22438	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3CDS	ENST00000343304	ENST00000380520		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000343304	ENST00000380524		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000343304	ENST00000380529		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000343304	ENST00000380539		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000343304	ENST00000380546		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000343304	ENST00000335686		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000380520		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000380524		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000380529		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000380539		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000380546		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3CDS	ENST00000472710	ENST00000335686		ChiTaRS3.1			BC004948	LRRC41	chr1	46746936	+	SERPINB6	chr6	2953362	-
intron-3UTR	ENST00000341084	ENST00000341084		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-3UTR	ENST00000341084	ENST00000519449		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-intron	ENST00000341084	ENST00000523255		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-3UTR	ENST00000519449	ENST00000341084		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-3UTR	ENST00000519449	ENST00000519449		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-intron	ENST00000519449	ENST00000523255		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-3UTR	ENST00000523255	ENST00000341084		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-3UTR	ENST00000523255	ENST00000519449		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-intron	ENST00000523255	ENST00000523255		ChiTaRS3.1			AA665088	RNF19A	chr8	101269363	-	RNF19A	chr8	101269590	+
intron-intron	ENST00000458420	ENST00000546087		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-3UTR	ENST00000458420	ENST00000538183		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000367055		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000367054		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000444946		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000337404		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000452684		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000535372		ChiTaRS3.1			AI288808	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
3UTR-intron	ENST00000470188	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
3UTR-intron	ENST00000470188	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000542731	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000542731	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000343407	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000343407	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000317716	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000317716	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000478080	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000478080	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000541203	ENST00000282479		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000541203	ENST00000339673		ChiTaRS3.1			CR745188	CDHR3	chr7	105553084	+	DMP1	chr4	88581950	-
intron-intron	ENST00000394729	ENST00000376840		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000394729	ENST00000409318		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000394729	ENST00000462819		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000330452	ENST00000376840		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000330452	ENST00000409318		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000330452	ENST00000462819		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000477794	ENST00000376840		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000477794	ENST00000409318		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-intron	ENST00000477794	ENST00000462819		ChiTaRS3.1			BI021268	PRKCD	chr3	53219123	-	TBC1D8	chr2	101700425	-
intron-3UTR	ENST00000296498	ENST00000296498		ChiTaRS3.1			BU607278	PRSS12	chr4	119201250	+	PRSS12	chr4	119201482	-
intron-intron	ENST00000296498	ENST00000510903		ChiTaRS3.1			BU607278	PRSS12	chr4	119201250	+	PRSS12	chr4	119201482	-
intron-3UTR	ENST00000510903	ENST00000296498		ChiTaRS3.1			BU607278	PRSS12	chr4	119201250	+	PRSS12	chr4	119201482	-
intron-intron	ENST00000510903	ENST00000510903		ChiTaRS3.1			BU607278	PRSS12	chr4	119201250	+	PRSS12	chr4	119201482	-
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AY839729	KMT2A	chr11	118358677	+	MLLT1	chr19	6273648	-
intron-3UTR	ENST00000220166	ENST00000220166		ChiTaRS3.1			CB243168	CTSH	chr15	79214175	+	CTSH	chr15	79214302	-
intron-intron	ENST00000220166	ENST00000534533		ChiTaRS3.1			CB243168	CTSH	chr15	79214175	+	CTSH	chr15	79214302	-
intron-3UTR	ENST00000534533	ENST00000220166		ChiTaRS3.1			CB243168	CTSH	chr15	79214175	+	CTSH	chr15	79214302	-
intron-intron	ENST00000534533	ENST00000534533		ChiTaRS3.1			CB243168	CTSH	chr15	79214175	+	CTSH	chr15	79214302	-
intron-intron	ENST00000418596	ENST00000418596		ChiTaRS3.1			H90018	FAM126B	chr2	201850122	+	FAM126B	chr2	201849058	+
intron-intron	ENST00000418596	ENST00000485144		ChiTaRS3.1			H90018	FAM126B	chr2	201850122	+	FAM126B	chr2	201849058	+
intron-intron	ENST00000485144	ENST00000418596		ChiTaRS3.1			H90018	FAM126B	chr2	201850122	+	FAM126B	chr2	201849058	+
intron-intron	ENST00000485144	ENST00000485144		ChiTaRS3.1			H90018	FAM126B	chr2	201850122	+	FAM126B	chr2	201849058	+
intron-3CDS	ENST00000379143	ENST00000379143		ChiTaRS3.1			BM462208	PCNA	chr20	5095661	+	PCNA	chr20	5099284	-
intron-3CDS	ENST00000379143	ENST00000379160		ChiTaRS3.1			BM462208	PCNA	chr20	5095661	+	PCNA	chr20	5099284	-
intron-3CDS	ENST00000379160	ENST00000379143		ChiTaRS3.1			BM462208	PCNA	chr20	5095661	+	PCNA	chr20	5099284	-
intron-3CDS	ENST00000379160	ENST00000379160		ChiTaRS3.1			BM462208	PCNA	chr20	5095661	+	PCNA	chr20	5099284	-
3UTR-intron	ENST00000273480	ENST00000341446		ChiTaRS3.1			BE674978	RNF7	chr3	141464365	-	BRI3BP	chr12	125500567	-
3UTR-intron	ENST00000480908	ENST00000341446		ChiTaRS3.1			BE674978	RNF7	chr3	141464365	-	BRI3BP	chr12	125500567	-
3UTR-intron	ENST00000393000	ENST00000341446		ChiTaRS3.1			BE674978	RNF7	chr3	141464365	-	BRI3BP	chr12	125500567	-
intron-intron	ENST00000486377	ENST00000341446		ChiTaRS3.1			BE674978	RNF7	chr3	141464365	-	BRI3BP	chr12	125500567	-
intron-intron	ENST00000553400	ENST00000553400		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000553400	ENST00000330836		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000553400	ENST00000544005		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000553400	ENST00000555054		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000330836	ENST00000553400		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000330836	ENST00000330836		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000330836	ENST00000544005		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000330836	ENST00000555054		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000544005	ENST00000553400		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000544005	ENST00000330836		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000544005	ENST00000544005		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000544005	ENST00000555054		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000555054	ENST00000553400		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000555054	ENST00000330836		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000555054	ENST00000544005		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000555054	ENST00000555054		ChiTaRS3.1			BP377968	DDX24	chr14	94526829	-	DDX24	chr14	94528880	-
intron-intron	ENST00000571102	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000571102	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000571102	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000571102	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000571102	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000431515	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000431515	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000431515	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000431515	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000431515	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000440027	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000440027	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000440027	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000440027	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000440027	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000262300	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000262300	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000262300	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000262300	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000262300	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574385	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574385	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574385	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574385	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574385	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574730	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574730	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574730	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574730	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000574730	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000573944	ENST00000318782		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000573944	ENST00000293978		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000573944	ENST00000576565		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000573944	ENST00000572687		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000573944	ENST00000574988		ChiTaRS3.1			AF014118	PKMYT1	chr16	3030464	+	PAQR4	chr16	3030309	-
intron-intron	ENST00000290795	ENST00000415676		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000290795	ENST00000288197		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000290795	ENST00000474759		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000290795	ENST00000490478		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000290795	ENST00000478261		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000355105	ENST00000415676		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000355105	ENST00000288197		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000355105	ENST00000474759		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000355105	ENST00000490478		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000355105	ENST00000478261		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000479235	ENST00000415676		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000479235	ENST00000288197		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000479235	ENST00000474759		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000479235	ENST00000490478		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-intron	ENST00000479235	ENST00000478261		ChiTaRS3.1			BG119228	GPBP1L1	chr1	46093368	+	CACNA2D3	chr3	54600005	-
intron-3CDS	ENST00000376238	ENST00000376238		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-3CDS	ENST00000376238	ENST00000537648		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-intron	ENST00000376238	ENST00000495823		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-3CDS	ENST00000537648	ENST00000376238		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-3CDS	ENST00000537648	ENST00000537648		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-intron	ENST00000537648	ENST00000495823		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-3CDS	ENST00000495823	ENST00000376238		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-3CDS	ENST00000495823	ENST00000537648		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-intron	ENST00000495823	ENST00000495823		ChiTaRS3.1			AK074678	SLC28A3	chr9	86894223	-	SLC28A3	chr9	86905103	-
intron-5UTR	ENST00000228136	ENST00000458477		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000228136	ENST00000228307		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000228136	ENST00000424649		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000228136	ENST00000397506		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000228136	ENST00000536957		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000228136	ENST00000267257		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000228136	ENST00000538144		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000422258	ENST00000458477		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000422258	ENST00000228307		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000422258	ENST00000424649		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000422258	ENST00000397506		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000422258	ENST00000536957		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000422258	ENST00000267257		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000422258	ENST00000538144		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000527893	ENST00000458477		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000527893	ENST00000228307		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000527893	ENST00000424649		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000527893	ENST00000397506		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000527893	ENST00000536957		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000527893	ENST00000267257		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000527893	ENST00000538144		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000525684	ENST00000458477		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000525684	ENST00000228307		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000525684	ENST00000424649		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000525684	ENST00000397506		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000525684	ENST00000536957		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-intron	ENST00000525684	ENST00000267257		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
intron-5UTR	ENST00000525684	ENST00000538144		ChiTaRS3.1			DB239368	C11orf58	chr11	16760466	+	PXN	chr12	120661538	-
3UTR-3UTR	ENST00000356592	ENST00000370355		ChiTaRS3.1			AA985118	GABRG2	chr5	161582396	-	SCD	chr10	102120947	-
3UTR-3UTR	ENST00000414552	ENST00000370355		ChiTaRS3.1			AA985118	GABRG2	chr5	161582396	-	SCD	chr10	102120947	-
intron-3UTR	ENST00000361925	ENST00000370355		ChiTaRS3.1			AA985118	GABRG2	chr5	161582396	-	SCD	chr10	102120947	-
intron-3UTR	ENST00000393933	ENST00000370355		ChiTaRS3.1			AA985118	GABRG2	chr5	161582396	-	SCD	chr10	102120947	-
intron-intron	ENST00000375734	ENST00000438796		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000414675		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000441090		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000334859		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000425562		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000493726		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000375734	ENST00000536618		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000438796		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000414675		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000441090		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000334859		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000425562		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000493726		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000263895	ENST00000536618		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000438796		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000414675		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000441090		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000334859		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000425562		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000493726		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000409557	ENST00000536618		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000438796		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000414675		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000441090		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000334859		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000425562		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000493726		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000472416	ENST00000536618		ChiTaRS3.1			AW804058	RND3	chr2	151329003	+	LRCH3	chr3	197559427	+
intron-intron	ENST00000388712	ENST00000388712		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000388712	ENST00000388711		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000388712	ENST00000257504		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000388711	ENST00000388712		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000388711	ENST00000388711		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000388711	ENST00000257504		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000257504	ENST00000388712		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000257504	ENST00000388711		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-intron	ENST00000257504	ENST00000257504		ChiTaRS3.1			CV346948	GOLM1	chr9	88677507	+	GOLM1	chr9	88679491	-
intron-5UTR	ENST00000435607	ENST00000435607		ChiTaRS3.1			CD608178	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000435607	ENST00000578147		ChiTaRS3.1			CD608178	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000435607		ChiTaRS3.1			CD608178	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000578147		ChiTaRS3.1			CD608178	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-intron	ENST00000318217	ENST00000317173		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000441698		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000518255		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000521209		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000528246		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000382490		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000318217	ENST00000517594		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000317173		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000441698		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000518255		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000521209		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000528246		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000382490		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000394649	ENST00000517594		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000317173		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000441698		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000518255		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000521209		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000528246		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000382490		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000579584	ENST00000517594		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000317173		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000441698		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000518255		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000521209		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000528246		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000382490		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000584232	ENST00000517594		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000317173		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000441698		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000518255		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000521209		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000528246		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000382490		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000583621	ENST00000517594		ChiTaRS3.1			AA654208	MYO1D	chr17	31184346	+	MSRA	chr8	10151442	-
intron-intron	ENST00000538442	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000399150	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000252229	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000427115	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000442104	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000451603	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000546706	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000438954	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000458032	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000551950	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000437651	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000383514	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000551608	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000436531	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000436655	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000547574	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000400313	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000428416	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000549014	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000428059	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000451789	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000443156	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-intron	ENST00000551960	ENST00000518740		ChiTaRS3.1			DA658778	MICB	chr6	2842536	+	TXNRD3	chr3	126366141	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000415690		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000424646		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			AA649098	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3CDS	ENST00000319550	ENST00000407426		ChiTaRS3.1			AW814828	NT5DC1	chr6	116459977	-	WDR43	chr2	29124925	-
intron-intron	ENST00000287912	ENST00000287912		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000401878		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000392759		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000486747		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000341148		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000287912		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000401878		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000392759		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000486747		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000341148		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000287912		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000401878		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000392759		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000486747		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000341148		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000287912		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000401878		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000392759		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000486747		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000341148		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000287912		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000401878		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000392759		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000486747		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000341148		ChiTaRS3.1			BF906258	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000504734	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000504734	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000504734	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000504734	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000504734	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000504734	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000415618	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000415618	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000415618	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000415618	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000415618	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000415618	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000452673	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000452673	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-3UTR	ENST00000452673	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-3UTR	ENST00000452673	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000452673	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000452673	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000247461	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000247461	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-3UTR	ENST00000247461	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-3UTR	ENST00000247461	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000247461	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
3UTR-intron	ENST00000247461	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000512607	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000512607	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000512607	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000512607	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000512607	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000512607	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000503126	ENST00000504734		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000503126	ENST00000415618		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000503126	ENST00000452673		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3UTR	ENST00000503126	ENST00000247461		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000503126	ENST00000512607		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-intron	ENST00000503126	ENST00000503126		ChiTaRS3.1			AW583198	CANX	chr5	179156863	+	CANX	chr5	179156755	-
intron-3CDS	ENST00000256190	ENST00000256190		ChiTaRS3.1			AK022478	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000256190	ENST00000527019		ChiTaRS3.1			AK022478	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-3CDS	ENST00000527019	ENST00000256190		ChiTaRS3.1			AK022478	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000527019	ENST00000527019		ChiTaRS3.1			AK022478	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000268124	ENST00000268124		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000268124	ENST00000442287		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000268124	ENST00000525806		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000442287	ENST00000268124		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000442287	ENST00000442287		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000442287	ENST00000525806		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000525806	ENST00000268124		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000525806	ENST00000442287		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-intron	ENST00000525806	ENST00000525806		ChiTaRS3.1			AW277008	POLG	chr15	89868223	+	POLG	chr15	89867728	+
intron-3UTR	ENST00000337907	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000337907	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000337907	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000337907	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000337907	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000337907	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000377464	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000377464	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000377464	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000377464	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000377464	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000377464	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000400907	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000400907	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400907	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400907	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400907	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400907	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000400908	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000400908	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400908	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400908	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400908	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000400908	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000476556	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000476556	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000476556	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000476556	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000476556	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000476556	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000460659	ENST00000337907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000460659	ENST00000377464		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000460659	ENST00000400907		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000460659	ENST00000400908		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000460659	ENST00000476556		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-intron	ENST00000460659	ENST00000460659		ChiTaRS3.1			BE829558	RERE	chr1	8413865	-	RERE	chr1	8413722	+
intron-3UTR	ENST00000409947	ENST00000409947		ChiTaRS3.1			AA830998	MAP3K2	chr2	128063602	+	MAP3K2	chr2	128062230	+
intron-intron	ENST00000409947	ENST00000344908		ChiTaRS3.1			AA830998	MAP3K2	chr2	128063602	+	MAP3K2	chr2	128062230	+
intron-3UTR	ENST00000344908	ENST00000409947		ChiTaRS3.1			AA830998	MAP3K2	chr2	128063602	+	MAP3K2	chr2	128062230	+
intron-intron	ENST00000344908	ENST00000344908		ChiTaRS3.1			AA830998	MAP3K2	chr2	128063602	+	MAP3K2	chr2	128062230	+
5CDS-intron	ENST00000402676	ENST00000333646		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000374102		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000374080		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000462984		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000333646		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000374102		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000374080		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000462984		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000333646		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000374102		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000374080		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000462984		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000333646		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000374102		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000374080		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000462984		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000333646		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000374102		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000374080		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000462984		ChiTaRS3.1			BE005998	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-3CDS	ENST00000366872	ENST00000366872		ChiTaRS3.1			CA945138	CAPN8	chr1	223716377	+	CAPN8	chr1	223716510	-
intron-intron	ENST00000366872	ENST00000366873		ChiTaRS3.1			CA945138	CAPN8	chr1	223716377	+	CAPN8	chr1	223716510	-
intron-3CDS	ENST00000366873	ENST00000366872		ChiTaRS3.1			CA945138	CAPN8	chr1	223716377	+	CAPN8	chr1	223716510	-
intron-intron	ENST00000366873	ENST00000366873		ChiTaRS3.1			CA945138	CAPN8	chr1	223716377	+	CAPN8	chr1	223716510	-
intron-3CDS	ENST00000223127	ENST00000263980		ChiTaRS3.1			BQ369038	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-intron	ENST00000223127	ENST00000490329		ChiTaRS3.1			BQ369038	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-5UTR	ENST00000223127	ENST00000545949		ChiTaRS3.1			BQ369038	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
intron-5UTR	ENST00000223127	ENST00000374086		ChiTaRS3.1			BQ369038	PLOD3	chr7	100853705	-	SLC9A1	chr1	27436212	-
5CDS-3UTR	ENST00000263253	ENST00000263253		ChiTaRS3.1			AW580958	EP300	chr22	41574952	-	EP300	chr22	41574978	+
3UTR-intron	ENST00000458225	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000458225	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000458225	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000458225	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000458225	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000337271	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000337271	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000337271	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000337271	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000444190	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000444190	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000444190	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000444190	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000187397	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000187397	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000187397	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000187397	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000417925	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000417925	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000417925	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000417925	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000428373	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000428373	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000428373	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000428373	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000427542	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000427542	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000427542	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000427542	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000474696	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000474696	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000474696	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000474696	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000412048	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000412048	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000412048	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000412048	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396482	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396482	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396482	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396482	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000432682	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000432682	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000432682	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000432682	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396481	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396481	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000396481	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000396481	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000441454	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000441454	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000441454	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000441454	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000436702	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000436702	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000436702	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000436702	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000438071	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000438071	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-intron	ENST00000438071	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3UTR	ENST00000438071	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000458225		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000337271		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000476052	ENST00000444190		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000476052	ENST00000187397		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000417925		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000428373		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000427542		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000474696		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000412048		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000396482		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000432682		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000396481		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000441454		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000436702		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-intron	ENST00000476052	ENST00000438071		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
3UTR-3UTR	ENST00000476052	ENST00000476052		ChiTaRS3.1			BG389588	ARPP21	chr3	35835864	-	ARPP21	chr3	35835897	+
intron-3CDS	ENST00000286301	ENST00000368003		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000286301	ENST00000473766		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3CDS	ENST00000515239	ENST00000368003		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000515239	ENST00000473766		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3CDS	ENST00000543093	ENST00000368003		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-3UTR	ENST00000543093	ENST00000473766		ChiTaRS3.1			BI050568	CSF1R	chr5	149432919	-	UFC1	chr1	161127090	-
intron-intron	ENST00000251527	ENST00000251527		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000251527	ENST00000497111		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000251527	ENST00000435514		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000497111	ENST00000251527		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000497111	ENST00000497111		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000497111	ENST00000435514		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000435514	ENST00000251527		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000435514	ENST00000497111		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-intron	ENST00000435514	ENST00000435514		ChiTaRS3.1			W26908	ESYT2	chr7	158526027	-	ESYT2	chr7	158530366	-
intron-3UTR	ENST00000267485	ENST00000280557		ChiTaRS3.1			BQ884188	C14orf37	chr14	58753547	-	DENR	chr12	123254309	+
intron-3UTR	ENST00000267485	ENST00000455982		ChiTaRS3.1			BQ884188	C14orf37	chr14	58753547	-	DENR	chr12	123254309	+
intron-3UTR	ENST00000334342	ENST00000280557		ChiTaRS3.1			BQ884188	C14orf37	chr14	58753547	-	DENR	chr12	123254309	+
intron-3UTR	ENST00000334342	ENST00000455982		ChiTaRS3.1			BQ884188	C14orf37	chr14	58753547	-	DENR	chr12	123254309	+
intron-intron	ENST00000397661	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000397661	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000397661	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000397661	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000592199	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000592199	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000592199	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000587760	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000587760	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587760	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000585575	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000585575	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000585575	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-3UTR	ENST00000360105	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-3UTR	ENST00000360105	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000360105	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000588228	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000588228	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588228	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000587260	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000587260	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000587260	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-3UTR	ENST00000358552	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-3UTR	ENST00000358552	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
3UTR-intron	ENST00000358552	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000397661		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000592199		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000587760		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000585575		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000588680	ENST00000360105		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000588228		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000587260		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-3UTR	ENST00000588680	ENST00000358552		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
intron-intron	ENST00000588680	ENST00000588680		ChiTaRS3.1			AI817698	NFIX	chr19	13207314	-	NFIX	chr19	13208629	-
5UTR-3CDS	ENST00000431388	ENST00000431388		ChiTaRS3.1			AW470858	C17orf89	chr17	79213136	-	C17orf89	chr17	79214805	+
5UTR-3UTR	ENST00000431388	ENST00000573173		ChiTaRS3.1			AW470858	C17orf89	chr17	79213136	-	C17orf89	chr17	79214805	+
intron-3CDS	ENST00000573173	ENST00000431388		ChiTaRS3.1			AW470858	C17orf89	chr17	79213136	-	C17orf89	chr17	79214805	+
intron-3UTR	ENST00000573173	ENST00000573173		ChiTaRS3.1			AW470858	C17orf89	chr17	79213136	-	C17orf89	chr17	79214805	+
intron-3UTR	ENST00000355451	ENST00000307365		ChiTaRS3.1			BQ773488	NUDCD3	chr7	44507715	-	DDIT4	chr10	74035103	-
intron-3UTR	ENST00000460110	ENST00000307365		ChiTaRS3.1			BQ773488	NUDCD3	chr7	44507715	-	DDIT4	chr10	74035103	-
intron-intron	ENST00000324366	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000324366	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397441	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000397440	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000216350	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000538452	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553897	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000398309		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000376104		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000418306		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000280241		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000543673		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000376106		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000330014		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000537455		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000524982		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000532653		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000531015		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000398301		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000426717		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000404783		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000398304		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000530800		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-intron	ENST00000553641	ENST00000472545		ChiTaRS3.1			DA812278	PRMT5	chr14	23391665	-	DLG2	chr11	85013483	-
intron-5UTR	ENST00000579226	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000579226		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000217652		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000578611		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000585090		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000580887		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000536605		ChiTaRS3.1			BF895658	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
Frame-shit	ENST00000360839	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
Frame-shit	ENST00000360839	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000360839	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000360839	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000360839	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000360839	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
Frame-shit	ENST00000297183	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
Frame-shit	ENST00000297183	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000297183	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000297183	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000297183	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
5CDS-intron	ENST00000297183	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000394723	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000394723	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394723	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394723	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394723	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394723	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000394722	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000394722	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394722	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394722	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394722	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000394722	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000462121	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000462121	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000462121	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000462121	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000462121	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000462121	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000544120	ENST00000360839		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3CDS	ENST00000544120	ENST00000297183		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000544120	ENST00000394723		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000544120	ENST00000394722		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000544120	ENST00000462121		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-intron	ENST00000544120	ENST00000544120		ChiTaRS3.1			BG403888	ANKHD1	chr5	139889252	-	ANKHD1	chr5	139889325	+
intron-3UTR	ENST00000381337	ENST00000304987		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
intron-intron	ENST00000381337	ENST00000533868		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
intron-3UTR	ENST00000431224	ENST00000304987		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
intron-intron	ENST00000431224	ENST00000533868		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
intron-3UTR	ENST00000396083	ENST00000304987		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
intron-intron	ENST00000396083	ENST00000533868		ChiTaRS3.1			BG988558	THUMPD1	chr16	20750043	+	SIK2	chr11	111601375	-
5CDS-intron	ENST00000295598	ENST00000565468		ChiTaRS3.1			BF800128	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
5CDS-intron	ENST00000537345	ENST00000565468		ChiTaRS3.1			BF800128	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
5CDS-intron	ENST00000369496	ENST00000565468		ChiTaRS3.1			BF800128	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
intron-intron	ENST00000491156	ENST00000565468		ChiTaRS3.1			BF800128	ATP1A1	chr1	116943817	-	TMEM178B	chr7	140996153	+
intron-intron	ENST00000260372	ENST00000260372		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000260372	ENST00000568876		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000260372	ENST00000568846		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568876	ENST00000260372		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568876	ENST00000568876		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568876	ENST00000568846		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568846	ENST00000260372		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568846	ENST00000568876		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
intron-intron	ENST00000568846	ENST00000568846		ChiTaRS3.1			BF091528	HAUS2	chr15	42854545	+	HAUS2	chr15	42851445	+
3UTR-intron	ENST00000341441	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000341441	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000378576	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000378576	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000416162	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000416162	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000393187	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000393187	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000223215	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
3UTR-intron	ENST00000223215	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
intron-intron	ENST00000437945	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
intron-intron	ENST00000437945	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
intron-intron	ENST00000462132	ENST00000305747		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
intron-intron	ENST00000462132	ENST00000392687		ChiTaRS3.1			BF209028	MEST	chr7	130146084	-	CERS6	chr2	169374258	-
intron-intron	ENST00000374675	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374675	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000374675	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000374675	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000374677	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000374677	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000374677	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000463972	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000463972	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000463972	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000423043	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000423043	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000423043	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000418477	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000418477	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000418477	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486338	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000486338	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000486338	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000416369	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000416369	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000416369	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441854	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000441854	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000441854	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000477713	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000477713	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000477713	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000441953	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000441953	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000441953	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000431735	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000431735	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000431735	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000462670	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000462670	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000462670	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383214	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-3UTR	ENST00000383214	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-3UTR	ENST00000383214	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-intron	ENST00000383213	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-3UTR	ENST00000383213	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
5CDS-3UTR	ENST00000383213	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000486373	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000486373	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000486373	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000443773	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000443773	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000443773	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000456261	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000456261	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000456261	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000376377		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000259874		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000416336		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000439190		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000429592		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000416884		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000400509		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000383560		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000436988		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000487655	ENST00000450236		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000487655	ENST00000446599		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-3UTR	ENST00000487655	ENST00000435856		ChiTaRS3.1			BF819978	SLC39A7	chr6	4402354	-	IER3	chr6	2043612	+
intron-intron	ENST00000604938	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604938	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401010	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000339388	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000369323	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000605317	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000479926	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000604894	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000604938		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000401010		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000339388		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000369323		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000605317		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000479926		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000604894		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-intron	ENST00000401009	ENST00000401009		ChiTaRS3.1			AI246468	NBPF11	chr1	147745215	+	NBPF11	chr1	147775662	-
intron-3CDS	ENST00000262375	ENST00000346213		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000262375	ENST00000393860		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000262375	ENST00000547517		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000355296	ENST00000346213		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000355296	ENST00000393860		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000355296	ENST00000547517		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000431375	ENST00000346213		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000431375	ENST00000393860		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000431375	ENST00000547517		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000572139	ENST00000346213		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000572139	ENST00000393860		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000572139	ENST00000547517		ChiTaRS3.1			BF093478	DNAJA3	chr16	4505541	-	RAB5C	chr17	40282464	+
intron-3CDS	ENST00000263088	ENST00000318074		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-3CDS	ENST00000263088	ENST00000543823		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-3UTR	ENST00000263088	ENST00000490170		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-3CDS	ENST00000572940	ENST00000318074		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-3CDS	ENST00000572940	ENST00000543823		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-3UTR	ENST00000572940	ENST00000490170		ChiTaRS3.1			AI909908	PLD2	chr17	4721440	+	SYTL1	chr1	27676205	-
intron-intron	ENST00000431666	ENST00000431666		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000431666	ENST00000338624		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000431666	ENST00000245615		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000431666	ENST00000391754		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-5UTR	ENST00000431666	ENST00000474910		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000338624	ENST00000431666		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000338624	ENST00000338624		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000338624	ENST00000245615		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000338624	ENST00000391754		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-5UTR	ENST00000338624	ENST00000474910		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000245615	ENST00000431666		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000245615	ENST00000338624		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000245615	ENST00000245615		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000245615	ENST00000391754		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-5UTR	ENST00000245615	ENST00000474910		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000391754	ENST00000431666		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000391754	ENST00000338624		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000391754	ENST00000245615		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000391754	ENST00000391754		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-5UTR	ENST00000391754	ENST00000474910		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000474910	ENST00000431666		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000474910	ENST00000338624		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000474910	ENST00000245615		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-intron	ENST00000474910	ENST00000391754		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-5UTR	ENST00000474910	ENST00000474910		ChiTaRS3.1			BF919648	MBOAT7	chr19	54688505	+	MBOAT7	chr19	54691069	-
intron-3CDS	ENST00000365032	ENST00000524918		ChiTaRS3.1			DB040428	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-3CDS	ENST00000365032	ENST00000313028		ChiTaRS3.1			DB040428	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-3CDS	ENST00000365032	ENST00000525773		ChiTaRS3.1			DB040428	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-5UTR	ENST00000365032	ENST00000533665		ChiTaRS3.1			DB040428	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
5CDS-3UTR	ENST00000476549	ENST00000273221		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-intron	ENST00000476549	ENST00000473088		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-3UTR	ENST00000289361	ENST00000273221		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-intron	ENST00000289361	ENST00000473088		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-3UTR	ENST00000425234	ENST00000273221		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-intron	ENST00000425234	ENST00000473088		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-3UTR	ENST00000414912	ENST00000273221		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
5CDS-intron	ENST00000414912	ENST00000473088		ChiTaRS3.1			AV724518	BTN3A1	chr6	26405858	+	IQSEC1	chr3	12939091	-
intron-intron	ENST00000377067	ENST00000377067		ChiTaRS3.1			DW446998	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000377067	ENST00000483422		ChiTaRS3.1			DW446998	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000483422	ENST00000377067		ChiTaRS3.1			DW446998	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-intron	ENST00000483422	ENST00000483422		ChiTaRS3.1			DW446998	GPC5	chr13	93476181	+	GPC5	chr13	93473461	+
intron-3CDS	ENST00000534328	ENST00000388922		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000534328	ENST00000550683		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000534328	ENST00000419526		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000534328	ENST00000550084		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000388922		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000550683		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000419526		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000332231	ENST00000550084		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000388922		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000550683		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000419526		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000448903	ENST00000550084		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000388922		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000550683		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000419526		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000525891	ENST00000550084		ChiTaRS3.1			AW956968	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
3UTR-3CDS	ENST00000269919	ENST00000597960		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000610101		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000596558		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000222308		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000608443		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000269919	ENST00000453489		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000597960		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000610101		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000596558		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000222308		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000608443		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000604499	ENST00000453489		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000597960		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000610101		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000596558		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000222308		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000608443		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000595066	ENST00000453489		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000597960		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000610101		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000596558		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000222308		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000608443		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
3UTR-3CDS	ENST00000252813	ENST00000453489		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000597960		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000610101		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000596558		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000222308		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000608443		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-3CDS	ENST00000597431	ENST00000453489		ChiTaRS3.1			AK222838	PGPEP1	chr19	18474512	+	FKBP8	chr19	18652658	-
intron-intron	ENST00000417172	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000417172	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000417172	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000417172	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000417172	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000417172	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000417172	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000417172	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000417172	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000417172	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361388	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361388	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361388	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361388	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361388	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000422748	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000422748	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000422748	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000422748	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000422748	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361675	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361675	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361675	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361675	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361675	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361901	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361901	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361901	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000361901	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000361901	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000393118	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000393118	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000393118	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000393118	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000393118	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000495522	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000495522	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000495522	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000495522	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000495522	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000424922	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000424922	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000424922	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000424922	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000424922	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000543443	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000543443	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000543443	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-3UTR	ENST00000543443	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
intron-intron	ENST00000543443	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000417172		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000466704	ENST00000361388		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000422748		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000466704	ENST00000361675		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000466704	ENST00000361901		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-3UTR	ENST00000466704	ENST00000393118		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000495522		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000424922		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000543443		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000466704	ENST00000466704		ChiTaRS3.1			AW067908	CALD1	chr7	134653576	-	CALD1	chr7	134653664	+
3UTR-intron	ENST00000341184	ENST00000442235		ChiTaRS3.1			DR422998	MGAT3	chr22	39886108	+	TTC31	chr2	74721605	+
3UTR-3UTR	ENST00000341184	ENST00000410003		ChiTaRS3.1			DR422998	MGAT3	chr22	39886108	+	TTC31	chr2	74721605	+
3UTR-3UTR	ENST00000341184	ENST00000233623		ChiTaRS3.1			DR422998	MGAT3	chr22	39886108	+	TTC31	chr2	74721605	+
3UTR-intron	ENST00000341184	ENST00000463189		ChiTaRS3.1			DR422998	MGAT3	chr22	39886108	+	TTC31	chr2	74721605	+
intron-intron	ENST00000498905	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000498905	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000498905	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000498905	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000498905	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000498905	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000527406	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000499953	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000525636	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000534671	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000498905		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000527406		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000499953		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000525636		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000534671		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
intron-intron	ENST00000526617	ENST00000526617		ChiTaRS3.1			BQ961448	SBF2-AS1	chr11	9810712	+	SBF2-AS1	chr11	9806557	-
5CDS-intron	ENST00000306100	ENST00000531066		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000306100	ENST00000355661		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000306100	ENST00000448080		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000306100	ENST00000532079		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000306100	ENST00000332954		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000379164	ENST00000531066		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000379164	ENST00000355661		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000379164	ENST00000448080		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000379164	ENST00000532079		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000379164	ENST00000332954		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000536695	ENST00000531066		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000536695	ENST00000355661		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000536695	ENST00000448080		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000536695	ENST00000532079		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000536695	ENST00000332954		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000427802	ENST00000531066		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000427802	ENST00000355661		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000427802	ENST00000448080		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000427802	ENST00000532079		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
5CDS-intron	ENST00000427802	ENST00000332954		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
intron-intron	ENST00000511170	ENST00000531066		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
intron-intron	ENST00000511170	ENST00000355661		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
intron-intron	ENST00000511170	ENST00000448080		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
intron-intron	ENST00000511170	ENST00000532079		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
intron-intron	ENST00000511170	ENST00000332954		ChiTaRS3.1			BC073978	FSTL5	chr4	162680566	-	PLEKHA7	chr11	16996259	-
3UTR-intron	ENST00000371108	ENST00000361368		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
3UTR-intron	ENST00000371108	ENST00000361125		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
3UTR-intron	ENST00000371108	ENST00000480055		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000263440	ENST00000361368		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000263440	ENST00000361125		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000263440	ENST00000480055		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000494765	ENST00000361368		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000494765	ENST00000361125		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
intron-intron	ENST00000494765	ENST00000480055		ChiTaRS3.1			BI493648	ALG6	chr1	63902872	+	SMURF1	chr7	98697268	-
3UTR-intron	ENST00000534336	ENST00000534312		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-3UTR	ENST00000534336	ENST00000395850		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-3UTR	ENST00000534336	ENST00000533403		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-3UTR	ENST00000534336	ENST00000351554		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-3UTR	ENST00000534336	ENST00000415002		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-3UTR	ENST00000534336	ENST00000445143		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-intron	ENST00000534336	ENST00000426650		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-intron	ENST00000534336	ENST00000437761		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-intron	ENST00000534336	ENST00000527577		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
3UTR-intron	ENST00000534336	ENST00000528700		ChiTaRS3.1			BE837978	MALAT1	chr11	65273083	-	CD59	chr11	33731360	+
intron-intron	ENST00000569547	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569547	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000395258	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000287202	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000539635	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000543764	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000567083	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000569547		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000395258		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000287202		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000539635		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000543764		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000567083		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000569311	ENST00000569311		ChiTaRS3.1			BF359368	CELF6	chr15	72595839	+	CELF6	chr15	72595820	-
intron-intron	ENST00000313117	ENST00000296794		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000287898		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000545377		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000513042		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000437974		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000426542		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000296799		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000513841		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000313117	ENST00000512883		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000296794		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000287898		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000545377		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000513042		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000437974		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000426542		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000296799		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000513841		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000446327	ENST00000512883		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000296794		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000287898		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000545377		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000513042		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000437974		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000426542		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000296799		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000513841		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000409276	ENST00000512883		ChiTaRS3.1			CV569368	SRSF7	chr2	38976740	-	ARHGEF28	chr5	73076181	+
intron-intron	ENST00000462448	ENST00000462448		ChiTaRS3.1			BM969318	STK17A	chr7	43648591	+	STK17A	chr7	43648627	-
intron-intron	ENST00000462448	ENST00000319357		ChiTaRS3.1			BM969318	STK17A	chr7	43648591	+	STK17A	chr7	43648627	-
intron-intron	ENST00000319357	ENST00000462448		ChiTaRS3.1			BM969318	STK17A	chr7	43648591	+	STK17A	chr7	43648627	-
intron-intron	ENST00000319357	ENST00000319357		ChiTaRS3.1			BM969318	STK17A	chr7	43648591	+	STK17A	chr7	43648627	-
3UTR-3CDS	ENST00000517503	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000292494	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000429120	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000521699	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000520531	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000520466	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000521003	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522528	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522971	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000519611	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000521182	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000519546	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000523847	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522024	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000519615	ENST00000368554		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000361518		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000359035		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000463816		ChiTaRS3.1			CB164138	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000316005	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000316005	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000316005	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370521	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370505	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000370513	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000544045	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000264316		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000510457		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000495119	ENST00000507351		ChiTaRS3.1			BX092188	PKN2	chr1	89281547	+	TXK	chr4	48134719	-
intron-intron	ENST00000361654	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000361654	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000545889	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000302528	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000358808	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000537178	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540338	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000536634	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000514135		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000296595		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000506536		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000512429		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000509387		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000511218		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
intron-intron	ENST00000540539	ENST00000515293		ChiTaRS3.1			BF800078	CLIP1	chr12	122885399	+	TMEM161B	chr5	87495115	+
5CDS-intron	ENST00000446906	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000446906	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377072	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000307729	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
5CDS-intron	ENST00000377059	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000495130	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377100	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000438796		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000414675		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000441090		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000334859		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000425562		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000493726		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
intron-intron	ENST00000377091	ENST00000536618		ChiTaRS3.1			BG999468	MLLT10	chr10	22021972	+	LRCH3	chr3	197582583	+
Frame-shit	ENST00000266087	ENST00000266087		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-intron	ENST00000266087	ENST00000382058		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-5UTR	ENST00000266087	ENST00000397426		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-3UTR	ENST00000266087	ENST00000465418		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
Frame-shit	ENST00000382058	ENST00000266087		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-intron	ENST00000382058	ENST00000382058		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-5UTR	ENST00000382058	ENST00000397426		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-3UTR	ENST00000382058	ENST00000465418		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
Frame-shit	ENST00000397426	ENST00000266087		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-intron	ENST00000397426	ENST00000382058		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-5UTR	ENST00000397426	ENST00000397426		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5CDS-3UTR	ENST00000397426	ENST00000465418		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
intron-3CDS	ENST00000465418	ENST00000266087		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
intron-intron	ENST00000465418	ENST00000382058		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
intron-5UTR	ENST00000465418	ENST00000397426		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
intron-3UTR	ENST00000465418	ENST00000465418		ChiTaRS3.1			AA569698	FBXO7	chr22	32875262	+	FBXO7	chr22	32874968	+
5UTR-3CDS	ENST00000256759	ENST00000256759		ChiTaRS3.1			AW068788	FST	chr5	52776574	-	FST	chr5	52778800	+
5UTR-3CDS	ENST00000256759	ENST00000396947		ChiTaRS3.1			AW068788	FST	chr5	52776574	-	FST	chr5	52778800	+
5UTR-3CDS	ENST00000396947	ENST00000256759		ChiTaRS3.1			AW068788	FST	chr5	52776574	-	FST	chr5	52778800	+
5UTR-3CDS	ENST00000396947	ENST00000396947		ChiTaRS3.1			AW068788	FST	chr5	52776574	-	FST	chr5	52778800	+
intron-intron	ENST00000603542	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603542	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000603542	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603542	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603542	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000421143	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000421143	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000421143	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000421143	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000421143	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000426491	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000426491	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000426491	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000426491	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000426491	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000451151	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000451151	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000451151	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000451151	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000451151	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000453544	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000453544	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000453544	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000453544	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000453544	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000605592	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000605592	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000605592	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000605592	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000605592	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603245	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603245	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000603245	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603245	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000603245	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000438646	ENST00000575752		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000438646	ENST00000571936		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000438646	ENST00000344823		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000438646	ENST00000268655		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-intron	ENST00000438646	ENST00000572544		ChiTaRS3.1			BU594568	SNAP25-AS1	chr20	10015560	+	ZNF174	chr16	3451356	+
intron-5UTR	ENST00000524325	ENST00000464611		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000524325	ENST00000331789		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000307180	ENST00000464611		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000307180	ENST00000331789		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000520166	ENST00000464611		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000520166	ENST00000331789		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000519651	ENST00000464611		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000519651	ENST00000331789		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000518928	ENST00000464611		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-5UTR	ENST00000518928	ENST00000331789		ChiTaRS3.1			AW970008	TSNARE1	chr8	143454297	-	ACTB	chr7	5567479	+
intron-3UTR	ENST00000458379	ENST00000458379		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000458379	ENST00000303225		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000458379	ENST00000589918		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000458379	ENST00000589620		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000458379	ENST00000593144		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000303225	ENST00000458379		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000303225	ENST00000303225		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000303225	ENST00000589918		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000303225	ENST00000589620		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000303225	ENST00000593144		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589918	ENST00000458379		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589918	ENST00000303225		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589918	ENST00000589918		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589918	ENST00000589620		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000589918	ENST00000593144		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589620	ENST00000458379		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589620	ENST00000303225		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589620	ENST00000589918		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000589620	ENST00000589620		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000589620	ENST00000593144		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000593144	ENST00000458379		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000593144	ENST00000303225		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000593144	ENST00000589918		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-3UTR	ENST00000593144	ENST00000589620		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000593144	ENST00000593144		ChiTaRS3.1			AW375778	FUT3	chr19	5851465	+	FUT3	chr19	5843724	-
intron-intron	ENST00000391826	ENST00000391826		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000391826	ENST00000595948		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000391826	ENST00000341114		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000595948	ENST00000391826		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000595948	ENST00000595948		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000595948	ENST00000341114		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000341114	ENST00000391826		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000341114	ENST00000595948		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000341114	ENST00000341114		ChiTaRS3.1			AW020688	IL4I1	chr19	50410436	+	IL4I1	chr19	50410291	-
intron-intron	ENST00000358901	ENST00000476233		ChiTaRS3.1			BF082148	VCP	chr9	35064227	-	HNRNPA2B1	chr7	26232909	-
intron-intron	ENST00000358901	ENST00000354667		ChiTaRS3.1			BF082148	VCP	chr9	35064227	-	HNRNPA2B1	chr7	26232909	-
intron-intron	ENST00000358901	ENST00000356674		ChiTaRS3.1			BF082148	VCP	chr9	35064227	-	HNRNPA2B1	chr7	26232909	-
In-frame	ENST00000332050	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000332050	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000397938	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000397938	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000406548	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000406548	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000331029	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000331029	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000414183	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000414183	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000333395	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000333395	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000332035	ENST00000262053		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
In-frame	ENST00000332035	ENST00000539132		ChiTaRS3.1			JN624779	EWSR1	chr22	29683123	+	ATF1	chr12	51208063	+
intron-3UTR	ENST00000368704	ENST00000368704		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368704	ENST00000368706		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368704	ENST00000368703		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368704	ENST00000368705		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368704	ENST00000474991		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368706	ENST00000368704		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368706	ENST00000368706		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368706	ENST00000368703		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368706	ENST00000368705		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368706	ENST00000474991		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368703	ENST00000368704		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368703	ENST00000368706		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368703	ENST00000368703		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368703	ENST00000368705		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368703	ENST00000474991		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368705	ENST00000368704		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000368705	ENST00000368706		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368705	ENST00000368703		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368705	ENST00000368705		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000368705	ENST00000474991		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000474991	ENST00000368704		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-3UTR	ENST00000474991	ENST00000368706		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000474991	ENST00000368703		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000474991	ENST00000368705		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
intron-intron	ENST00000474991	ENST00000474991		ChiTaRS3.1			BE894298	S100A16	chr1	153579479	+	S100A16	chr1	153579456	-
In-frame	ENST00000310447	ENST00000310447		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
5CDS-3UTR	ENST00000310447	ENST00000493642		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
5CDS-intron	ENST00000310447	ENST00000392925		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
3UTR-3CDS	ENST00000493642	ENST00000310447		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
3UTR-3UTR	ENST00000493642	ENST00000493642		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
3UTR-intron	ENST00000493642	ENST00000392925		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
intron-3CDS	ENST00000392925	ENST00000310447		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
intron-3UTR	ENST00000392925	ENST00000493642		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
intron-intron	ENST00000392925	ENST00000392925		ChiTaRS3.1			AW993608	CASP2	chr7	142997326	+	CASP2	chr7	143000968	-
In-frame	ENST00000373710	ENST00000373710		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000373710	ENST00000536859		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
Frame-shit	ENST00000373710	ENST00000373709		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000373710	ENST00000536384		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
5CDS-3UTR	ENST00000373710	ENST00000491976		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536859	ENST00000373710		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536859	ENST00000536859		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
Frame-shit	ENST00000536859	ENST00000373709		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536859	ENST00000536384		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
5CDS-3UTR	ENST00000536859	ENST00000491976		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000373709	ENST00000373710		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000373709	ENST00000536859		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
Frame-shit	ENST00000373709	ENST00000373709		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000373709	ENST00000536384		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
5CDS-3UTR	ENST00000373709	ENST00000491976		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536384	ENST00000373710		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536384	ENST00000536859		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
Frame-shit	ENST00000536384	ENST00000373709		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
In-frame	ENST00000536384	ENST00000536384		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
5CDS-3UTR	ENST00000536384	ENST00000491976		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
3UTR-3CDS	ENST00000491976	ENST00000373710		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
3UTR-3CDS	ENST00000491976	ENST00000536859		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
3UTR-3CDS	ENST00000491976	ENST00000373709		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
3UTR-3CDS	ENST00000491976	ENST00000536384		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
3UTR-3UTR	ENST00000491976	ENST00000491976		ChiTaRS3.1			AA481928	SERINC2	chr1	31902270	-	SERINC2	chr1	31906970	+
5CDS-3UTR	ENST00000354989	ENST00000281282		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-intron	ENST00000354989	ENST00000557813		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-3UTR	ENST00000360031	ENST00000281282		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-intron	ENST00000360031	ENST00000557813		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-3UTR	ENST00000376652	ENST00000281282		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-intron	ENST00000376652	ENST00000557813		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-3UTR	ENST00000433259	ENST00000281282		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
5CDS-intron	ENST00000433259	ENST00000557813		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
intron-3UTR	ENST00000485936	ENST00000281282		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
intron-intron	ENST00000485936	ENST00000557813		ChiTaRS3.1			DA046138	ENTPD6	chr20	25199246	+	CGNL1	chr15	57841123	+
intron-5UTR	ENST00000215882	ENST00000371222		ChiTaRS3.1			CD614308	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000451283	ENST00000371222		ChiTaRS3.1			CD614308	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000461267	ENST00000371222		ChiTaRS3.1			CD614308	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-intron	ENST00000398309	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398309	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376104	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000418306	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000280241	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000543673	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000376106	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000330014	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000537455	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000524982	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000532653	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000531015	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398301	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000426717	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000404783	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000398304	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000530800	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000398309		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000376104		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000418306		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000280241		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000543673		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000376106		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000330014		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000537455		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000524982		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000532653		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000531015		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000398301		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000426717		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000404783		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000398304		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000530800		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-intron	ENST00000472545	ENST00000472545		ChiTaRS3.1			CV410038	DLG2	chr11	83937902	+	DLG2	chr11	83937130	+
intron-3UTR	ENST00000570010	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000570010	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000570010	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000563356	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000563356	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000563356	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000568079	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000568079	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000568079	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000464850	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000464850	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000464850	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000332307	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000332307	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000332307	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-3UTR	ENST00000393430	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-intron	ENST00000393430	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
3UTR-intron	ENST00000393430	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-3UTR	ENST00000567481	ENST00000232978		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000567481	ENST00000460910		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000567481	ENST00000442970		ChiTaRS3.1			AA013468	ZFP1	chr16	75206082	-	NKTR	chr3	42688775	-
intron-intron	ENST00000277198	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000277198	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000277198	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000277198	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000277198	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000297979	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-3UTR	ENST00000297979	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-3UTR	ENST00000297979	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000297979	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000297979	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000375315	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-3UTR	ENST00000375315	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-3UTR	ENST00000375315	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000375315	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
3UTR-intron	ENST00000375315	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000395357	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000395357	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000395357	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000395357	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000395357	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000425634	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000425634	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000425634	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000425634	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000425634	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000433691	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000433691	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000433691	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000433691	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000433691	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000473778	ENST00000356396		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000473778	ENST00000397728		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-3UTR	ENST00000473778	ENST00000457828		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000473778	ENST00000522411		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000473778	ENST00000464357		ChiTaRS3.1			BI055158	C9orf3	chr9	97849148	+	LSS	chr21	47609069	+
intron-intron	ENST00000253861	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000253861	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000253861	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000253861	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000539845	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000539845	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000539845	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000539845	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000393161	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000393161	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000393161	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000393161	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000545148	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000545148	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000545148	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000545148	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000460346	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000460346	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000460346	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000460346	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000541309	ENST00000372899		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000541309	ENST00000372901		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000541309	ENST00000372883		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
intron-intron	ENST00000541309	ENST00000372903		ChiTaRS3.1			AK001118	EXOC4	chr7	133186937	+	UBR2	chr6	42580839	+
5UTR-intron	ENST00000599117	ENST00000599117		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000599117	ENST00000432763		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000599117	ENST00000402194		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000599117	ENST00000359191		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000599117	ENST00000598725		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000432763	ENST00000599117		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000432763	ENST00000432763		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000432763	ENST00000402194		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000432763	ENST00000359191		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000432763	ENST00000598725		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000402194	ENST00000599117		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000402194	ENST00000432763		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000402194	ENST00000402194		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000402194	ENST00000359191		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000402194	ENST00000598725		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000359191	ENST00000599117		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000359191	ENST00000432763		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000359191	ENST00000402194		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000359191	ENST00000359191		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000359191	ENST00000598725		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000598725	ENST00000599117		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000598725	ENST00000432763		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000598725	ENST00000402194		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000598725	ENST00000359191		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
5UTR-intron	ENST00000598725	ENST00000598725		ChiTaRS3.1			BM723368	SUPT5H	chr19	39936503	-	SUPT5H	chr19	39959500	-
intron-intron	ENST00000283195	ENST00000199940		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-3UTR	ENST00000283195	ENST00000360351		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-intron	ENST00000283195	ENST00000361559		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-3UTR	ENST00000283195	ENST00000392194		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-intron	ENST00000283195	ENST00000447185		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-intron	ENST00000283195	ENST00000475600		ChiTaRS3.1			AA682348	RANBP2	chr2	109345504	+	MAP2	chr2	210596951	-
intron-3UTR	ENST00000263390	ENST00000587309		ChiTaRS3.1			BC032658	MED26	chr19	16663449	-	KIF18B	chr17	43002577	-
intron-intron	ENST00000263390	ENST00000438933		ChiTaRS3.1			BC032658	MED26	chr19	16663449	-	KIF18B	chr17	43002577	-
intron-intron	ENST00000263390	ENST00000593135		ChiTaRS3.1			BC032658	MED26	chr19	16663449	-	KIF18B	chr17	43002577	-
intron-intron	ENST00000263390	ENST00000339151		ChiTaRS3.1			BC032658	MED26	chr19	16663449	-	KIF18B	chr17	43002577	-
intron-intron	ENST00000263390	ENST00000590129		ChiTaRS3.1			BC032658	MED26	chr19	16663449	-	KIF18B	chr17	43002577	-
intron-intron	ENST00000299338	ENST00000550404		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000299338	ENST00000261739		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000561064	ENST00000550404		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000561064	ENST00000261739		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558594	ENST00000550404		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558594	ENST00000261739		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000560246	ENST00000550404		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000560246	ENST00000261739		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000558862	ENST00000550404		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-3UTR	ENST00000558862	ENST00000261739		ChiTaRS3.1			BE047728	FAM227B	chr15	49624828	+	ANKRD13A	chr12	110476752	+
intron-intron	ENST00000342704	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000342704	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000375279	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000344201	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397798	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000346541	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000397800	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000492345	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000359606	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000491618	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000394609		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000405240		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000357376		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000317610		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000357732		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000337526		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000394611		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000404909		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000486085		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000354474		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-intron	ENST00000543126	ENST00000402434		ChiTaRS3.1			BE072318	CBFA2T2	chr20	32177180	-	RTN4	chr2	55213452	+
intron-3UTR	ENST00000367858	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000367858	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000524929	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000524929	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000413996	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000413996	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000237305	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000237305	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000367857	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000367857	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000528577	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000528577	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000475719	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000475719	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000489458	ENST00000225388		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000489458	ENST00000579665		ChiTaRS3.1			BE178199	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000379122	ENST00000379122		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000379122	ENST00000332496		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000379122	ENST00000560263		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000379122	ENST00000411539		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000332496	ENST00000379122		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000332496	ENST00000332496		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000332496	ENST00000560263		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000332496	ENST00000411539		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000560263	ENST00000379122		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000560263	ENST00000332496		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000560263	ENST00000560263		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000560263	ENST00000411539		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000411539	ENST00000379122		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000411539	ENST00000332496		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000411539	ENST00000560263		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000411539	ENST00000411539		ChiTaRS3.1			BE072539	SEMA4B	chr15	90749233	+	SEMA4B	chr15	90748295	+
intron-intron	ENST00000398599	ENST00000354960		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000398599	ENST00000394439		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000398599	ENST00000264805		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000398599	ENST00000512739		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000221992	ENST00000354960		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000221992	ENST00000394439		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000221992	ENST00000264805		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000221992	ENST00000512739		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000405816	ENST00000354960		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000405816	ENST00000394439		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000405816	ENST00000264805		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000405816	ENST00000512739		ChiTaRS3.1			BG980189	CEACAM5	chr19	42260645	+	PDE5A	chr4	120432019	+
intron-intron	ENST00000610191	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000610191	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000610191	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000610191	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000610191	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000610191	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000356098	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000216124	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547307	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000547805	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395621	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000453344	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000539605		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000357997		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000542282		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000542657		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000542374		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000395619	ENST00000337516		ChiTaRS3.1			BF898639	ARSA	chr22	51066034	+	ANKLE2	chr12	133313420	+
intron-intron	ENST00000300134	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000300134	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000300134	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000300134	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000300134	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000300134	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000538913	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000543873	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000556155	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000537215	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000300134		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000538913		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000543873		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000556155		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000537215		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000454075	ENST00000454075		ChiTaRS3.1			BF854179	STAT6	chr12	57503925	-	STAT6	chr12	57503814	+
intron-intron	ENST00000465917	ENST00000337414		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000380718		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000380732		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000534860		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000380736		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000303025		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000413512		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000465917	ENST00000491514		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000337414		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000380718		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000380732		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000534860		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000380736		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000303025		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000413512		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000245796	ENST00000491514		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000337414		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000380718		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000380732		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000534860		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000380736		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000303025		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000413512		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000441564	ENST00000491514		ChiTaRS3.1			CV355109	PSD4	chr2	113935077	-	ARHGAP6	chrX	11520936	+
intron-intron	ENST00000318602	ENST00000318602		ChiTaRS3.1			BF880179	A2M	chr12	9248234	-	A2M	chr12	9251205	+
intron-intron	ENST00000318602	ENST00000542567		ChiTaRS3.1			BF880179	A2M	chr12	9248234	-	A2M	chr12	9251205	+
intron-intron	ENST00000542567	ENST00000318602		ChiTaRS3.1			BF880179	A2M	chr12	9248234	-	A2M	chr12	9251205	+
intron-intron	ENST00000542567	ENST00000542567		ChiTaRS3.1			BF880179	A2M	chr12	9248234	-	A2M	chr12	9251205	+
3UTR-5UTR	ENST00000216144	ENST00000344318		ChiTaRS3.1			AW881149	CABP7	chr22	30127292	-	ZMAT5	chr22	30144556	-
3UTR-5UTR	ENST00000216144	ENST00000397781		ChiTaRS3.1			AW881149	CABP7	chr22	30127292	-	ZMAT5	chr22	30144556	-
3UTR-3CDS	ENST00000375749	ENST00000357710		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000324501		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000344094		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000261970		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000394164		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000557511		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000406768		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-3CDS	ENST00000375749	ENST00000394157		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
3UTR-intron	ENST00000375749	ENST00000553447		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000357710		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000324501		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000344094		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000261970		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000394164		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000557511		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000406768		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000375730	ENST00000394157		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000375730	ENST00000553447		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000357710		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000324501		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000344094		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000261970		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000394164		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000557511		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000406768		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000539210	ENST00000394157		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000539210	ENST00000553447		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000357710		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000324501		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000344094		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000261970		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000394164		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000557511		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000406768		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-3CDS	ENST00000486717	ENST00000394157		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
intron-intron	ENST00000486717	ENST00000553447		ChiTaRS3.1			AW374429	POFUT1	chr20	30823405	-	PSEN1	chr14	73640298	-
Frame-shit	ENST00000595618	ENST00000595618		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000595618	ENST00000594824		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000595618	ENST00000397274		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
5CDS-intron	ENST00000595618	ENST00000593411		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000594824	ENST00000595618		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000594824	ENST00000594824		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000594824	ENST00000397274		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
5CDS-intron	ENST00000594824	ENST00000593411		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000397274	ENST00000595618		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000397274	ENST00000594824		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
Frame-shit	ENST00000397274	ENST00000397274		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
5CDS-intron	ENST00000397274	ENST00000593411		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
intron-3CDS	ENST00000593411	ENST00000595618		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
intron-3CDS	ENST00000593411	ENST00000594824		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
intron-3CDS	ENST00000593411	ENST00000397274		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
intron-intron	ENST00000593411	ENST00000593411		ChiTaRS3.1			AI493469	MYO9B	chr19	17286514	-	MYO9B	chr19	17302005	-
intron-intron	ENST00000408667	ENST00000408667		ChiTaRS3.1			AA829939	MIR548F1	chr1	186372882	-	MIR548F1	chr1	186373755	-
intron-intron	ENST00000400427	ENST00000303635		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000439411		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000476163		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000557126		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000473578		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000467404		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400427	ENST00000476864		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000303635		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000439411		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000476163		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000557126		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000473578		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000467404		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400424	ENST00000476864		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000303635		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000439411		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000476163		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000557126		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000473578		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000467404		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408910	ENST00000476864		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000303635		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000439411		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000476163		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000557126		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000473578		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000467404		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000408989	ENST00000476864		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000303635		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000439411		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000476163		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000557126		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000473578		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000467404		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-intron	ENST00000400423	ENST00000476864		ChiTaRS3.1			EL582679	UMODL1	chr21	43542800	+	CAMTA1	chr1	7553463	-
intron-3UTR	ENST00000538352	ENST00000538352		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-intron	ENST00000538352	ENST00000025399		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-3UTR	ENST00000538352	ENST00000419869		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-3UTR	ENST00000025399	ENST00000538352		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-intron	ENST00000025399	ENST00000025399		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-3UTR	ENST00000025399	ENST00000419869		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
3UTR-3UTR	ENST00000419869	ENST00000538352		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
3UTR-intron	ENST00000419869	ENST00000025399		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
3UTR-3UTR	ENST00000419869	ENST00000419869		ChiTaRS3.1			BU509169	STRAP	chr12	16056244	-	STRAP	chr12	16055964	+
intron-intron	ENST00000310653	ENST00000310653		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000310653	ENST00000336083		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000310653	ENST00000536566		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000310653	ENST00000541588		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000336083	ENST00000310653		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000336083	ENST00000336083		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000336083	ENST00000536566		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000336083	ENST00000541588		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000536566	ENST00000310653		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000536566	ENST00000336083		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000536566	ENST00000536566		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000536566	ENST00000541588		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000541588	ENST00000310653		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000541588	ENST00000336083		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000541588	ENST00000536566		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
intron-intron	ENST00000541588	ENST00000541588		ChiTaRS3.1			N33989	RAB6A	chr11	73416924	-	RAB6A	chr11	73428128	-
In-frame	ENST00000366730	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366730	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000391865	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000391865	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000366726	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366726	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000312726	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000312726	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
intron-3CDS	ENST00000366728	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
intron-5UTR	ENST00000366728	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
Frame-shit	ENST00000366723	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366723	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
Frame-shit	ENST00000366722	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366722	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000366721	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366721	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000366718	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366718	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
3UTR-3CDS	ENST00000470040	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
3UTR-5UTR	ENST00000470040	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
In-frame	ENST00000366716	ENST00000254480		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
5CDS-5UTR	ENST00000366716	ENST00000425518		ChiTaRS3.1			BI051269	GUK1	chr1	228336090	-	SMARCC1	chr3	47651631	-
intron-3CDS	ENST00000286091	ENST00000549920		ChiTaRS3.1			BE881549	PDIA4	chr7	148709083	-	RPL18	chr19	49120010	-
intron-3CDS	ENST00000286091	ENST00000550645		ChiTaRS3.1			BE881549	PDIA4	chr7	148709083	-	RPL18	chr19	49120010	-
intron-3CDS	ENST00000286091	ENST00000552588		ChiTaRS3.1			BE881549	PDIA4	chr7	148709083	-	RPL18	chr19	49120010	-
intron-3CDS	ENST00000286091	ENST00000549273		ChiTaRS3.1			BE881549	PDIA4	chr7	148709083	-	RPL18	chr19	49120010	-
intron-intron	ENST00000336861	ENST00000559228		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000336861	ENST00000450403		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000246635	ENST00000559228		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000246635	ENST00000450403		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000587544	ENST00000559228		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000587544	ENST00000450403		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000587118	ENST00000559228		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
intron-intron	ENST00000587118	ENST00000450403		ChiTaRS3.1			BF734819	KRT13	chr17	39658715	+	FAM63B	chr15	59068617	-
3UTR-intron	ENST00000534336	ENST00000447619		ChiTaRS3.1			CB144939	MALAT1	chr11	65269435	+	OST4	chr2	27294537	-
3UTR-5UTR	ENST00000534336	ENST00000456793		ChiTaRS3.1			CB144939	MALAT1	chr11	65269435	+	OST4	chr2	27294537	-
3UTR-intron	ENST00000534336	ENST00000429985		ChiTaRS3.1			CB144939	MALAT1	chr11	65269435	+	OST4	chr2	27294537	-
intron-3UTR	ENST00000441037	ENST00000265909		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000534726		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000545537		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000426933		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533318		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000530356		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000539184		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000528555		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000441037	ENST00000533214		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000421325	ENST00000265909		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000534726		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000545537		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000426933		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533318		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000530356		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000539184		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000528555		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000421325	ENST00000533214		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-3UTR	ENST00000389298	ENST00000265909		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000534726		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000545537		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000426933		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533318		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000530356		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000539184		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000528555		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000389298	ENST00000533214		ChiTaRS3.1			AW387309	AGBL1	chr15	87167549	+	SNX19	chr11	130746591	+
intron-intron	ENST00000216410	ENST00000216410		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000216410	ENST00000554421		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000216410	ENST00000554230		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554421	ENST00000216410		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554421	ENST00000554421		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554421	ENST00000554230		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554230	ENST00000216410		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554230	ENST00000554421		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-intron	ENST00000554230	ENST00000554230		ChiTaRS3.1			AI904839	GNPNAT1	chr14	53256905	-	GNPNAT1	chr14	53257701	-
intron-3UTR	ENST00000342066	ENST00000257261		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000342066	ENST00000522056		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-3UTR	ENST00000342066	ENST00000278840		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000342066	ENST00000521849		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000342066	ENST00000574708		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000342066	ENST00000522639		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000342066	ENST00000517839		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-3UTR	ENST00000478729	ENST00000257261		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000478729	ENST00000522056		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-3UTR	ENST00000478729	ENST00000278840		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000478729	ENST00000521849		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000478729	ENST00000574708		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000478729	ENST00000522639		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000478729	ENST00000517839		ChiTaRS3.1			CN283539	SAMD11	chr1	867338	+	FADS2	chr11	61634353	+
intron-intron	ENST00000527986	ENST00000407625		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000527986	ENST00000420135		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000527986	ENST00000461972		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000528337	ENST00000407625		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000528337	ENST00000420135		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000528337	ENST00000461972		ChiTaRS3.1			N85209	WAC-AS1	chr10	28816986	-	FAM228B	chr2	24357792	+
intron-intron	ENST00000260502	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000260502	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370244	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370244	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370243	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370243	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370247	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000370247	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000539242	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000539242	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000466632	ENST00000358015		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
intron-intron	ENST00000466632	ENST00000416373		ChiTaRS3.1			BE814279	BCAR3	chr1	94054433	+	RAD23B	chr9	110087285	-
5CDS-intron	ENST00000254108	ENST00000344595		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
5CDS-intron	ENST00000254108	ENST00000576848		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
5CDS-intron	ENST00000380244	ENST00000344595		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
5CDS-intron	ENST00000380244	ENST00000576848		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
5CDS-intron	ENST00000568685	ENST00000344595		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
5CDS-intron	ENST00000568685	ENST00000576848		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
3UTR-intron	ENST00000474990	ENST00000344595		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
3UTR-intron	ENST00000474990	ENST00000576848		ChiTaRS3.1			AA614279	FUS	chr16	31202314	-	SRR	chr17	2208483	-
intron-intron	ENST00000375742	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376059		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376049		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000414149		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000419376		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000425748		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000416422		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000413349		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000415830		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383474		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000488491		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383473		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000440907		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000549432		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000424944		ChiTaRS3.1			BM781979	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000410059	ENST00000264710		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000410059	ENST00000462003		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000264710		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000409163	ENST00000462003		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000264710		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000393147	ENST00000462003		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000264710		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000310323	ENST00000462003		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000264710		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-intron	ENST00000488208	ENST00000462003		ChiTaRS3.1			AW904489	DPP10	chr2	115276836	-	RAB10	chr2	26340621	+
intron-3CDS	ENST00000264538	ENST00000264538		ChiTaRS3.1			R64729	IFT57	chr3	107881460	-	IFT57	chr3	107881365	+
intron-intron	ENST00000264538	ENST00000468021		ChiTaRS3.1			R64729	IFT57	chr3	107881460	-	IFT57	chr3	107881365	+
intron-3CDS	ENST00000468021	ENST00000264538		ChiTaRS3.1			R64729	IFT57	chr3	107881460	-	IFT57	chr3	107881365	+
intron-intron	ENST00000468021	ENST00000468021		ChiTaRS3.1			R64729	IFT57	chr3	107881460	-	IFT57	chr3	107881365	+
intron-intron	ENST00000328257	ENST00000328257		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000328257	ENST00000398427		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000328257	ENST00000542710		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000328257	ENST00000543525		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000398427	ENST00000328257		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000398427	ENST00000398427		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000398427	ENST00000542710		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000398427	ENST00000543525		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000542710	ENST00000328257		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000542710	ENST00000398427		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000542710	ENST00000542710		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000542710	ENST00000543525		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000543525	ENST00000328257		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000543525	ENST00000398427		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000543525	ENST00000542710		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000543525	ENST00000543525		ChiTaRS3.1			BE769149	PPME1	chr11	73916450	-	PPME1	chr9	103115736	-
intron-intron	ENST00000474874	ENST00000474874		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000474874	ENST00000377482		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000474874	ENST00000467067		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000474874	ENST00000469499		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000377482	ENST00000474874		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000377482	ENST00000377482		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000377482	ENST00000467067		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000377482	ENST00000469499		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000467067	ENST00000474874		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000467067	ENST00000377482		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000467067	ENST00000467067		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000467067	ENST00000469499		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000469499	ENST00000474874		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000469499	ENST00000377482		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000469499	ENST00000467067		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-intron	ENST00000469499	ENST00000469499		ChiTaRS3.1			AW956039	ERRFI1	chr1	8076677	-	ERRFI1	chr1	8078305	-
intron-3UTR	ENST00000410534	ENST00000566228		ChiTaRS3.1			CD673869	SOX2-OT	chr3	181421817	+	SNX29	chr16	12667731	+
intron-intron	ENST00000410534	ENST00000323433		ChiTaRS3.1			CD673869	SOX2-OT	chr3	181421817	+	SNX29	chr16	12667731	+
intron-3UTR	ENST00000410534	ENST00000306030		ChiTaRS3.1			CD673869	SOX2-OT	chr3	181421817	+	SNX29	chr16	12667731	+
intron-intron	ENST00000410534	ENST00000568359		ChiTaRS3.1			CD673869	SOX2-OT	chr3	181421817	+	SNX29	chr16	12667731	+
intron-3CDS	ENST00000338368	ENST00000375400		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000338368	ENST00000375398		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000338368	ENST00000355867		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000338368	ENST00000535393		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000338368	ENST00000460007		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000338368	ENST00000538146		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000314191	ENST00000375400		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000314191	ENST00000375398		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000314191	ENST00000355867		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000314191	ENST00000535393		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000314191	ENST00000460007		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000314191	ENST00000538146		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000523565	ENST00000375400		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000523565	ENST00000375398		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000523565	ENST00000355867		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000523565	ENST00000535393		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000523565	ENST00000460007		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-intron	ENST00000523565	ENST00000538146		ChiTaRS3.1			BF821929	PRKDC	chr8	48859603	+	SVIL	chr10	29840056	-
intron-3CDS	ENST00000409699	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000409699	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000409699	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000409699	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000409699	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000360698	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000360698	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000360698	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000360698	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000360698	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000422354	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000422354	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000422354	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000422354	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000422354	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000395625	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000395625	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000395625	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000395625	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000395625	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000288745	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000288745	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000288745	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000288745	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000288745	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000478721	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000478721	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000478721	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000478721	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000478721	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000395614	ENST00000518164		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000395614	ENST00000521291		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-intron	ENST00000395614	ENST00000396070		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000395614	ENST00000287038		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-5UTR	ENST00000395614	ENST00000523172		ChiTaRS3.1			BF923959	MEGF11	chr15	66459306	+	RPL30	chr8	99057773	-
intron-3CDS	ENST00000554546	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000554546	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000554546	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000554546	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000554546	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000356296	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000356296	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000356296	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000356296	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000356296	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000557597	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000557597	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000557597	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000557597	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000557597	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000555238	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555238	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555238	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555238	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555238	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000355058	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000355058	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000355058	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000355058	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000355058	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000359560	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000359560	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000359560	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000359560	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000359560	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000555394	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555394	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555394	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555394	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555394	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000454166	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000454166	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000454166	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000454166	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000454166	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000544991	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000544991	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000544991	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000544991	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000544991	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000560335	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000560335	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000560335	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000560335	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000560335	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000555738	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555738	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000555738	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555738	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000555738	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000559312	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000559312	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000559312	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000559312	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000559312	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000554521	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000554521	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000554521	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000554521	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000554521	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000535282	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000535282	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000535282	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000535282	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000535282	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000556600	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000556600	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000556600	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000556600	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000556600	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-3CDS	ENST00000556772	ENST00000267884		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000556772	ENST00000558527		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-5UTR	ENST00000556772	ENST00000558720		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000556772	ENST00000560773		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
intron-intron	ENST00000556772	ENST00000559081		ChiTaRS3.1			BE836999	NUMB	chr14	73759574	+	SRP14	chr15	40331128	+
3UTR-3UTR	ENST00000354336	ENST00000356805		ChiTaRS3.1			AW608839	CRKL	chr22	21307483	+	SPTBN1	chr2	54896676	-
3UTR-intron	ENST00000354336	ENST00000333896		ChiTaRS3.1			AW608839	CRKL	chr22	21307483	+	SPTBN1	chr2	54896676	-
intron-intron	ENST00000445000	ENST00000506722		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000394537		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000357077		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000264366		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000509550		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000510275		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000445000	ENST00000504887		ChiTaRS3.1			AB209779	LINC01011	chr6	3015940	+	ANK2	chr4	114066847	+
intron-intron	ENST00000465139	ENST00000486478		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000465139	ENST00000450089		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000465139	ENST00000371201		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000465139	ENST00000395552		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000483551	ENST00000486478		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000483551	ENST00000450089		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000483551	ENST00000371201		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000483551	ENST00000395552		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000560303	ENST00000486478		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000560303	ENST00000450089		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000560303	ENST00000371201		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000560303	ENST00000395552		ChiTaRS3.1			T20169	ANP32A	chr15	69071722	-	C1orf87	chr1	60458727	+
intron-intron	ENST00000394817	ENST00000216489		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000394817	ENST00000554097		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000265195	ENST00000216489		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000265195	ENST00000554097		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000509534	ENST00000216489		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000509534	ENST00000554097		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000515008	ENST00000216489		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
intron-intron	ENST00000515008	ENST00000554097		ChiTaRS3.1			AW813119	SIL1	chr5	138442723	+	ALKBH1	chr14	78144525	+
3UTR-3CDS	ENST00000324685	ENST00000324685		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000324685	ENST00000402121		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000324685	ENST00000563683		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000324685	ENST00000357890		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-intron	ENST00000324685	ENST00000567365		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000402121	ENST00000324685		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000402121	ENST00000402121		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000402121	ENST00000563683		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000402121	ENST00000357890		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-intron	ENST00000402121	ENST00000567365		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000563683	ENST00000324685		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000563683	ENST00000402121		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000563683	ENST00000563683		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000563683	ENST00000357890		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-intron	ENST00000563683	ENST00000567365		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000357890	ENST00000324685		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000357890	ENST00000402121		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000357890	ENST00000563683		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-3CDS	ENST00000357890	ENST00000357890		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
3UTR-intron	ENST00000357890	ENST00000567365		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000567365	ENST00000324685		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000567365	ENST00000402121		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000567365	ENST00000563683		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-3CDS	ENST00000567365	ENST00000357890		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
intron-intron	ENST00000567365	ENST00000567365		ChiTaRS3.1			BI026569	RNF40	chr16	30786078	+	RNF40	chr16	30780289	+
5UTR-3CDS	ENST00000393799	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393799	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000393799	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-3CDS	ENST00000530427	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
3UTR-intron	ENST00000530427	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393800	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000393800	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000534534	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000534534	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524845	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000524845	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-3CDS	ENST00000265637	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
intron-intron	ENST00000265637	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000524904	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000524904	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000393801	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000393801	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000265636	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000265636	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000529710	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000529710	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000541738		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000409411		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000409957		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000409936		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000260648		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000409272		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000410081		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000378520		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-3CDS	ENST00000527403	ENST00000378511		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
5UTR-intron	ENST00000527403	ENST00000540817		ChiTaRS3.1			DA402969	PPP6R3	chr11	68287058	+	PREPL	chr2	44556148	-
Frame-shit	ENST00000373823	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373823	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373823	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373823	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373823	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373808	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373808	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373808	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373808	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000436847	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000436847	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000436847	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000436847	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000449733	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000449733	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000449733	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000449733	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000412819	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000412819	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000412819	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000412819	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000394353	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000394353	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000394353	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000394353	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000341272	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000341272	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000341272	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000341272	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000545652	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000545652	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000545652	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000545652	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373818	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373818	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373818	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373818	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-3CDS	ENST00000485767	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-intron	ENST00000485767	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-intron	ENST00000485767	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
intron-intron	ENST00000485767	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
Frame-shit	ENST00000373807	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373807	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373807	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5CDS-intron	ENST00000373807	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000373823		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000373808		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000436847		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000449733		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000412819		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000394353		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000341272		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000545652		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-3CDS	ENST00000373806	ENST00000373818		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-intron	ENST00000373806	ENST00000485767		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-intron	ENST00000373806	ENST00000373807		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
5UTR-intron	ENST00000373806	ENST00000373806		ChiTaRS3.1			BE939479	GSN	chr9	124088921	+	GSN	chr9	124086899	-
3UTR-3CDS	ENST00000294244	ENST00000294244		ChiTaRS3.1			AI087989	C11orf84	chr11	63595097	-	C11orf84	chr11	63585486	+
intron-3UTR	ENST00000273308	ENST00000273308		ChiTaRS3.1			AL831869	CNPY2	chr12	56704354	-	CNPY2	chr12	56704256	+
intron-intron	ENST00000273308	ENST00000551720		ChiTaRS3.1			AL831869	CNPY2	chr12	56704354	-	CNPY2	chr12	56704256	+
intron-3UTR	ENST00000551720	ENST00000273308		ChiTaRS3.1			AL831869	CNPY2	chr12	56704354	-	CNPY2	chr12	56704256	+
intron-intron	ENST00000551720	ENST00000551720		ChiTaRS3.1			AL831869	CNPY2	chr12	56704354	-	CNPY2	chr12	56704256	+
3UTR-3UTR	ENST00000329654	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000329654	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000329654	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000329654	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000329654	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000329654	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371049	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371049	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371049	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371049	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371049	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371049	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000423207	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000423207	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000423207	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000423207	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000423207	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000423207	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371048	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371048	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371048	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371048	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000371048	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000371048	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000371045	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000371045	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000371045	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000371045	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-3UTR	ENST00000371045	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
3UTR-intron	ENST00000371045	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000480109	ENST00000329654		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000480109	ENST00000371049		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000480109	ENST00000423207		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000480109	ENST00000371048		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-3UTR	ENST00000480109	ENST00000371045		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
intron-intron	ENST00000480109	ENST00000480109		ChiTaRS3.1			AA226609	PDE4B	chr1	66839041	+	PDE4B	chr1	66839057	-
5CDS-3UTR	ENST00000405876	ENST00000405876		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
5CDS-3UTR	ENST00000405876	ENST00000312777		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
5CDS-intron	ENST00000405876	ENST00000550780		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
5CDS-3UTR	ENST00000312777	ENST00000405876		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
5CDS-3UTR	ENST00000312777	ENST00000312777		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
5CDS-intron	ENST00000312777	ENST00000550780		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
intron-3UTR	ENST00000550780	ENST00000405876		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
intron-3UTR	ENST00000550780	ENST00000312777		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
intron-intron	ENST00000550780	ENST00000550780		ChiTaRS3.1			CB158699	TCHP	chr12	110346420	-	TCHP	chr12	110355234	+
intron-intron	ENST00000262570	ENST00000262570		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000262570	ENST00000448878		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000262570	ENST00000476546		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000262570	ENST00000542753		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000448878	ENST00000262570		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000448878	ENST00000448878		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000448878	ENST00000476546		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000448878	ENST00000542753		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000476546	ENST00000262570		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000476546	ENST00000448878		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000476546	ENST00000476546		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000476546	ENST00000542753		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000542753	ENST00000262570		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000542753	ENST00000448878		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000542753	ENST00000476546		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000542753	ENST00000542753		ChiTaRS3.1			AW816289	CHCHD3	chr7	132604666	+	CHCHD3	chr7	132605179	-
intron-intron	ENST00000373203	ENST00000341217		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000581407		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000582266		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000452648		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000582059		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000583953		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000577682		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000583522		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000373203	ENST00000581381		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000341217		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000581407		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000582266		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000452648		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000582059		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000583953		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000577682		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000583522		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344849	ENST00000581381		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000341217		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000581407		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000582266		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000452648		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000582059		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000583953		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000577682		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000583522		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000480266	ENST00000581381		ChiTaRS3.1			BG506729	ENG	chr9	130605005	-	FAM222B	chr17	27165337	-
intron-intron	ENST00000344041	ENST00000379542		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000491103		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000461342		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000475942		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000379530		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000473276		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000481240		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000344041	ENST00000467317		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000379542		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000491103		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000461342		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000475942		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000379530		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000473276		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000481240		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000475788	ENST00000467317		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000379542		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000491103		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000461342		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000475942		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000379530		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000473276		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000481240		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000405243	ENST00000467317		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000379542		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000491103		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000461342		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000475942		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000379530		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000473276		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000481240		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000401957	ENST00000467317		ChiTaRS3.1			BG483209	RAPGEF5	chr7	22211458	-	TMEM14B	chr6	10848782	+
intron-intron	ENST00000538935	ENST00000507606		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000538935	ENST00000422968		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000359570	ENST00000507606		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000359570	ENST00000422968		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000450745	ENST00000507606		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000450745	ENST00000422968		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000455936	ENST00000507606		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000455936	ENST00000422968		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000474278	ENST00000507606		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000474278	ENST00000422968		ChiTaRS3.1			AA019799	INPP5D	chr2	233977114	+	C7orf73	chr7	135360084	-
intron-intron	ENST00000514342	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514342	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505697	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000511363	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503750	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000281631	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000514067	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000505554	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000513738	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000514342		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000505697		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000511363		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000503750		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000281631		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000514067		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000505554		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000513738		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
intron-intron	ENST00000503665	ENST00000503665		ChiTaRS3.1			BF910519	PARP8	chr5	50045982	-	PARP8	chr5	50074484	-
5CDS-intron	ENST00000371927	ENST00000427718		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371927	ENST00000330622		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371927	ENST00000549689		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371926	ENST00000427718		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371926	ENST00000330622		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371926	ENST00000549689		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
intron-intron	ENST00000461650	ENST00000427718		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
intron-intron	ENST00000461650	ENST00000330622		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
intron-intron	ENST00000461650	ENST00000549689		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371924	ENST00000427718		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371924	ENST00000330622		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371924	ENST00000549689		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371922	ENST00000427718		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371922	ENST00000330622		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
5CDS-intron	ENST00000371922	ENST00000549689		ChiTaRS3.1			BF805839	STAMBPL1	chr10	90673027	-	FBXO21	chr12	117614558	-
intron-intron	ENST00000389709	ENST00000389709		ChiTaRS3.1			AW205249	ZXDC	chr3	126172992	+	ZXDC	chr3	126172279	+
intron-intron	ENST00000389709	ENST00000336332		ChiTaRS3.1			AW205249	ZXDC	chr3	126172992	+	ZXDC	chr3	126172279	+
intron-intron	ENST00000336332	ENST00000389709		ChiTaRS3.1			AW205249	ZXDC	chr3	126172992	+	ZXDC	chr3	126172279	+
intron-intron	ENST00000336332	ENST00000336332		ChiTaRS3.1			AW205249	ZXDC	chr3	126172992	+	ZXDC	chr3	126172279	+
intron-3CDS	ENST00000425534	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000389826	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000448225	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000295612	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000468147	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000421769	ENST00000425534		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000389826		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000448225		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000295612		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000468147		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000421769		ChiTaRS3.1			BF955589	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000414209	ENST00000380739		ChiTaRS3.1			AW578859	JPX	chrX	73207462	+	SERPINB1	chr6	2836214	+
intron-3CDS	ENST00000414209	ENST00000537185		ChiTaRS3.1			AW578859	JPX	chrX	73207462	+	SERPINB1	chr6	2836214	+
intron-intron	ENST00000414209	ENST00000476896		ChiTaRS3.1			AW578859	JPX	chrX	73207462	+	SERPINB1	chr6	2836214	+
intron-intron	ENST00000428417	ENST00000428417		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000428417	ENST00000376014		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000428417	ENST00000400796		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000428417	ENST00000434578		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000428417	ENST00000376008		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376014	ENST00000428417		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376014	ENST00000376014		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376014	ENST00000400796		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376014	ENST00000434578		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376014	ENST00000376008		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000400796	ENST00000428417		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000400796	ENST00000376014		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000400796	ENST00000400796		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000400796	ENST00000434578		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000400796	ENST00000376008		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000434578	ENST00000428417		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000434578	ENST00000376014		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000434578	ENST00000400796		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000434578	ENST00000434578		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000434578	ENST00000376008		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376008	ENST00000428417		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376008	ENST00000376014		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376008	ENST00000400796		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376008	ENST00000434578		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000376008	ENST00000376008		ChiTaRS3.1			CV427159	TMEM51	chr1	15515514	+	TMEM51	chr1	15515537	-
intron-intron	ENST00000382778	ENST00000382778		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000351808		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000319980		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000537103		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000382778	ENST00000461115		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000382778		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000351808		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000319980		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000537103		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000351808	ENST00000461115		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000382778		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000351808		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000319980		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000537103		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000319980	ENST00000461115		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000382778		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000351808		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000319980		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000537103		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000537103	ENST00000461115		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000382778		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000351808		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000319980		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000537103		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-intron	ENST00000461115	ENST00000461115		ChiTaRS3.1			AI621229	IFT88	chr13	21238612	-	IFT88	chr13	21239929	-
intron-3UTR	ENST00000362507	ENST00000330430		ChiTaRS3.1			CK902589	RNU5F-1	chr1	220231251	+	RCAN2	chr6	46190315	-
intron-3UTR	ENST00000362507	ENST00000371374		ChiTaRS3.1			CK902589	RNU5F-1	chr1	220231251	+	RCAN2	chr6	46190315	-
intron-3UTR	ENST00000362507	ENST00000306764		ChiTaRS3.1			CK902589	RNU5F-1	chr1	220231251	+	RCAN2	chr6	46190315	-
intron-intron	ENST00000362507	ENST00000405162		ChiTaRS3.1			CK902589	RNU5F-1	chr1	220231251	+	RCAN2	chr6	46190315	-
3UTR-3CDS	ENST00000081029	ENST00000264474		ChiTaRS3.1			BE840739	MRPS35	chr12	27908835	-	CSTA	chr3	122060371	+
3UTR-intron	ENST00000081029	ENST00000479204		ChiTaRS3.1			BE840739	MRPS35	chr12	27908835	-	CSTA	chr3	122060371	+
3UTR-3CDS	ENST00000538315	ENST00000264474		ChiTaRS3.1			BE840739	MRPS35	chr12	27908835	-	CSTA	chr3	122060371	+
3UTR-intron	ENST00000538315	ENST00000479204		ChiTaRS3.1			BE840739	MRPS35	chr12	27908835	-	CSTA	chr3	122060371	+
intron-intron	ENST00000181839	ENST00000181839		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000181839	ENST00000340829		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000181839	ENST00000484589		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000340829	ENST00000181839		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000340829	ENST00000340829		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000340829	ENST00000484589		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000484589	ENST00000181839		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000484589	ENST00000340829		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000484589	ENST00000484589		ChiTaRS3.1			BX491859	CDK13	chr7	40107446	+	CDK13	chr7	40104656	+
intron-intron	ENST00000368321	ENST00000368321		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368321	ENST00000368320		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368321	ENST00000368319		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368321	ENST00000482337		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368320	ENST00000368321		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368320	ENST00000368320		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368320	ENST00000368319		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368320	ENST00000482337		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368319	ENST00000368321		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368319	ENST00000368320		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368319	ENST00000368319		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000368319	ENST00000482337		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000482337	ENST00000368321		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000482337	ENST00000368320		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000482337	ENST00000368319		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000482337	ENST00000482337		ChiTaRS3.1			AW857709	KIAA0907	chr1	155895317	-	KIAA0907	chr1	155895900	+
intron-intron	ENST00000356766	ENST00000409558		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000356766	ENST00000272322		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000356766	ENST00000354504		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000521356	ENST00000409558		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000521356	ENST00000272322		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000521356	ENST00000354504		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000454009	ENST00000409558		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000454009	ENST00000272322		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000454009	ENST00000354504		ChiTaRS3.1			BX537789	PIWIL2	chr8	22177254	+	VPS54	chr2	64226175	-
intron-intron	ENST00000332408	ENST00000332408		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000332408	ENST00000396535		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000332408	ENST00000537958		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000396535	ENST00000332408		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000396535	ENST00000396535		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000396535	ENST00000537958		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000537958	ENST00000332408		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000537958	ENST00000396535		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000537958	ENST00000537958		ChiTaRS3.1			AA888309	SHC4	chr15	49171671	+	SHC4	chr15	49171741	-
intron-intron	ENST00000560609	ENST00000600603		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000601638		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000221557		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000598325		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000391842		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000599732		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000560609	ENST00000601675		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000600603		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000601638		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000221557		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000598325		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000391842		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000599732		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000258884	ENST00000601675		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000600603		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000601638		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000221557		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000598325		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000391842		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000599732		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000558464	ENST00000601675		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000600603		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000601638		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000221557		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000598325		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000391842		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000599732		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
3UTR-intron	ENST00000559506	ENST00000601675		ChiTaRS3.1			BX505939	ABHD17C	chr15	81047724	+	PTOV1	chr19	50359792	-
intron-intron	ENST00000477723	ENST00000482399		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000445902		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000478934		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000436044		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000448042		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000488583		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000441058		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000471761		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000443860		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000483351		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000383210		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000489236		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000485418		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000421357		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000428608		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000477723	ENST00000484649		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000482399		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000445902		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000478934		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000436044		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000448042		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000488583		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000441058		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000471761		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000443860		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000483351		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000383210		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000489236		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000485418		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000421357		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000428608		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000261015	ENST00000484649		ChiTaRS3.1			BM827819	WDR12	chr2	203776187	-	VPS52	chr6	4719526	-
intron-intron	ENST00000322723	ENST00000322723		ChiTaRS3.1			AW581869	NCL	chr2	232324890	-	NCL	chr2	232323715	+
intron-intron	ENST00000216962	ENST00000372242		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000216962	ENST00000372243		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000216962	ENST00000372244		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000216962	ENST00000476724		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000216962	ENST00000372237		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000216962	ENST00000372235		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000471359	ENST00000372242		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000471359	ENST00000372243		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000471359	ENST00000372244		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000471359	ENST00000476724		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000471359	ENST00000372237		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-5UTR	ENST00000471359	ENST00000372235		ChiTaRS3.1			BE696989	PYGB	chr20	25266394	+	TMEM53	chr1	45120425	+
intron-intron	ENST00000019317	ENST00000019317		ChiTaRS3.1			BU193289	RALBP1	chr18	9517946	-	RALBP1	chr18	9517994	+
intron-intron	ENST00000019317	ENST00000383432		ChiTaRS3.1			BU193289	RALBP1	chr18	9517946	-	RALBP1	chr18	9517994	+
intron-intron	ENST00000383432	ENST00000019317		ChiTaRS3.1			BU193289	RALBP1	chr18	9517946	-	RALBP1	chr18	9517994	+
intron-intron	ENST00000383432	ENST00000383432		ChiTaRS3.1			BU193289	RALBP1	chr18	9517946	-	RALBP1	chr18	9517994	+
intron-3UTR	ENST00000340855	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000340855	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000340855	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000340855	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000340855	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000340855	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000340855	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000537071	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000537071	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000537071	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000537071	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000537071	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000537071	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000537071	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000541269	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000541269	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000541269	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000541269	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000541269	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000541269	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000541269	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000422081	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000422081	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000422081	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000422081	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000422081	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000422081	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000422081	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370441	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370441	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370441	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370441	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370441	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370441	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370441	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000490775	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000490775	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000490775	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000490775	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000490775	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000490775	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000490775	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370443	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370443	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370443	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370443	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370443	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000370443	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000370443	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000427113	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000427113	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000427113	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000427113	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000427113	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000427113	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000427113	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000428056	ENST00000409257		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000428056	ENST00000589256		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000428056	ENST00000588800		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000428056	ENST00000591952		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000428056	ENST00000327898		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000428056	ENST00000586731		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-3UTR	ENST00000428056	ENST00000589664		ChiTaRS3.1			BX509939	IDS	chrX	148560595	+	AFMID	chr17	76203316	-
intron-intron	ENST00000545391	ENST00000545391		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000545391	ENST00000361171		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000545391	ENST00000436593		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000545391	ENST00000535766		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000545391	ENST00000485886		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000361171	ENST00000545391		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000361171	ENST00000361171		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000361171	ENST00000436593		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000361171	ENST00000535766		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000361171	ENST00000485886		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000436593	ENST00000545391		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000436593	ENST00000361171		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000436593	ENST00000436593		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000436593	ENST00000535766		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000436593	ENST00000485886		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000535766	ENST00000545391		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000535766	ENST00000361171		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000535766	ENST00000436593		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000535766	ENST00000535766		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000535766	ENST00000485886		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000485886	ENST00000545391		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000485886	ENST00000361171		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000485886	ENST00000436593		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000485886	ENST00000535766		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000485886	ENST00000485886		ChiTaRS3.1			BF853439	MVB12B	chr9	129165420	-	MVB12B	chr9	129165288	+
intron-intron	ENST00000281419	ENST00000281419		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000281419	ENST00000315273		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000281419	ENST00000491413		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000281419		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000315273		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000491413		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000281419		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000315273		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000491413		ChiTaRS3.1			BE073939	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
5CDS-intron	ENST00000528838	ENST00000005260		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
5CDS-intron	ENST00000528838	ENST00000462558		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
5CDS-intron	ENST00000400780	ENST00000005260		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
5CDS-intron	ENST00000400780	ENST00000462558		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000528842	ENST00000005260		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
intron-intron	ENST00000528842	ENST00000462558		ChiTaRS3.1			BC094829	HSF1	chr8	145535690	+	BAIAP2L1	chr7	98015908	-
intron-3UTR	ENST00000506722	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000506722	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000394537	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000394537	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000357077	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000357077	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000264366	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000264366	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000509550	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000509550	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000510275	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000510275	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000504887	ENST00000515856		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-3UTR	ENST00000504887	ENST00000239449		ChiTaRS3.1			BF949569	ANK2	chr4	113966934	-	PCDHB14	chr5	140605625	-
intron-intron	ENST00000261891	ENST00000261891		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000261891	ENST00000457488		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000261891	ENST00000558069		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000261891	ENST00000558482		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000457488	ENST00000261891		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000457488	ENST00000457488		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000457488	ENST00000558069		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000457488	ENST00000558482		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558069	ENST00000261891		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558069	ENST00000457488		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558069	ENST00000558069		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558069	ENST00000558482		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558482	ENST00000261891		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558482	ENST00000457488		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558482	ENST00000558069		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000558482	ENST00000558482		ChiTaRS3.1			BI035829	DAPK2	chr15	64203927	-	DAPK2	chr15	64203809	+
intron-intron	ENST00000264245	ENST00000537716		ChiTaRS3.1			BQ881039	ARHGAP31	chr3	119046128	-	CD320	chr19	8618512	-
intron-intron	ENST00000264245	ENST00000301458		ChiTaRS3.1			BQ881039	ARHGAP31	chr3	119046128	-	CD320	chr19	8618512	-
intron-intron	ENST00000264245	ENST00000596246		ChiTaRS3.1			BQ881039	ARHGAP31	chr3	119046128	-	CD320	chr19	8618512	-
intron-intron	ENST00000252804	ENST00000384994		ChiTaRS3.1			BI055149	PXDN	chr2	1637349	-	NEAT1	chr11	65191578	-
intron-intron	ENST00000483018	ENST00000384994		ChiTaRS3.1			BI055149	PXDN	chr2	1637349	-	NEAT1	chr11	65191578	-
intron-3CDS	ENST00000327896	ENST00000307877		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000327896	ENST00000539137		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000327896	ENST00000355113		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000327896	ENST00000602720		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000327896	ENST00000542536		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000417561	ENST00000307877		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000417561	ENST00000539137		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000417561	ENST00000355113		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000417561	ENST00000602720		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000417561	ENST00000542536		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000490605	ENST00000307877		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000490605	ENST00000539137		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000490605	ENST00000355113		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000490605	ENST00000602720		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000490605	ENST00000542536		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000393526	ENST00000307877		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000393526	ENST00000539137		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000393526	ENST00000355113		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000393526	ENST00000602720		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000393526	ENST00000542536		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000470789	ENST00000307877		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000470789	ENST00000539137		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000470789	ENST00000355113		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000470789	ENST00000602720		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-intron	ENST00000470789	ENST00000542536		ChiTaRS3.1			DA276739	FAM178B	chr2	97634769	-	SRP68	chr17	74066525	-
intron-3CDS	ENST00000348956	ENST00000348956		ChiTaRS3.1			BM690229	CKB	chr14	103986201	-	CKB	chr14	103988405	-
intron-3CDS	ENST00000378164	ENST00000378164		ChiTaRS3.1			BM992479	TAF2	chr8	120744352	+	TAF2	chr8	120744300	-
intron-intron	ENST00000378164	ENST00000519355		ChiTaRS3.1			BM992479	TAF2	chr8	120744352	+	TAF2	chr8	120744300	-
intron-3CDS	ENST00000519355	ENST00000378164		ChiTaRS3.1			BM992479	TAF2	chr8	120744352	+	TAF2	chr8	120744300	-
intron-intron	ENST00000519355	ENST00000519355		ChiTaRS3.1			BM992479	TAF2	chr8	120744352	+	TAF2	chr8	120744300	-
intron-3CDS	ENST00000355947	ENST00000355947		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-3CDS	ENST00000355947	ENST00000349062		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-intron	ENST00000355947	ENST00000354241		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-3CDS	ENST00000349062	ENST00000355947		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-3CDS	ENST00000349062	ENST00000349062		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-intron	ENST00000349062	ENST00000354241		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-3CDS	ENST00000354241	ENST00000355947		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-3CDS	ENST00000354241	ENST00000349062		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-intron	ENST00000354241	ENST00000354241		ChiTaRS3.1			CD694949	TRIM4	chr7	99490174	+	TRIM4	chr7	99490174	-
intron-intron	ENST00000471595	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000471595	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000478469	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000251654	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000483687	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000490504	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000466072	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000482086	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000468777	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000462637	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000469217	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000471595		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000478469		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000251654		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000483687		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000490504		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000466072		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000482086		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000468777		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000462637		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000469217		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-intron	ENST00000474833	ENST00000474833		ChiTaRS3.1			BM874469	PCCB	chr3	136051715	-	PCCB	chr3	136051997	-
intron-3CDS	ENST00000345136	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000357649	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000354589	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000398774	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000322810	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000354958	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000356346	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000436759	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000527096	ENST00000535781		ChiTaRS3.1			BF762059	PLEC	chr8	145039098	-	PRPF6	chr20	62664191	+
intron-3CDS	ENST00000380003	ENST00000380003		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-5UTR	ENST00000380003	ENST00000488117		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-intron	ENST00000380003	ENST00000379997		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-3CDS	ENST00000488117	ENST00000380003		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-5UTR	ENST00000488117	ENST00000488117		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-intron	ENST00000488117	ENST00000379997		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-3CDS	ENST00000379997	ENST00000380003		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-5UTR	ENST00000379997	ENST00000488117		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-intron	ENST00000379997	ENST00000379997		ChiTaRS3.1			BE706419	C9orf72	chr9	27548326	+	C9orf72	chr9	27548638	-
intron-3CDS	ENST00000253329	ENST00000253329		ChiTaRS3.1			BE887609	PPIL4	chr6	149842304	+	PPIL4	chr6	149842285	-
intron-intron	ENST00000253329	ENST00000340881		ChiTaRS3.1			BE887609	PPIL4	chr6	149842304	+	PPIL4	chr6	149842285	-
intron-3CDS	ENST00000340881	ENST00000253329		ChiTaRS3.1			BE887609	PPIL4	chr6	149842304	+	PPIL4	chr6	149842285	-
intron-intron	ENST00000340881	ENST00000340881		ChiTaRS3.1			BE887609	PPIL4	chr6	149842304	+	PPIL4	chr6	149842285	-
intron-intron	ENST00000264036	ENST00000274254		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-3UTR	ENST00000264036	ENST00000274255		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000264036	ENST00000508514		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000264036	ENST00000546211		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000392814	ENST00000274254		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-3UTR	ENST00000392814	ENST00000274255		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000392814	ENST00000508514		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000392814	ENST00000546211		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000530144	ENST00000274254		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-3UTR	ENST00000530144	ENST00000274255		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000530144	ENST00000508514		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
intron-intron	ENST00000530144	ENST00000546211		ChiTaRS3.1			BC006329	MCAM	chr11	119180231	-	SKP2	chr5	36183634	+
5CDS-3UTR	ENST00000394997	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000394997	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000394997	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000394997	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000337138	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000337138	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000337138	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000337138	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000323441	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000323441	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000323441	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000323441	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000557538	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000557538	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000557538	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000557538	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000539097	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000539097	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-3UTR	ENST00000539097	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
5CDS-intron	ENST00000539097	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-3UTR	ENST00000557206	ENST00000374875		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-3UTR	ENST00000557206	ENST00000265371		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-3UTR	ENST00000557206	ENST00000374867		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000395995		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000374821		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000374822		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000374823		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000374816		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
3UTR-intron	ENST00000557206	ENST00000432372		ChiTaRS3.1			DA461349	HIF1A	chr14	62187250	+	NRP1	chr10	33467838	+
intron-intron	ENST00000436443	ENST00000490337		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000389636		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000471742		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000302490		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000389634		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000497291		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000490337		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000389636		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000471742		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000302490		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000389634		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000497291		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000490337		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000389636		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000471742		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000302490		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000389634		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000497291		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000490337		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000389636		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000471742		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000302490		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000389634		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000497291		ChiTaRS3.1			BE669609	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000589026	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000589026	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000609388	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586907	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000442982	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000588973	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000608862	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
3UTR-intron	ENST00000447891	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000432640	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000450803	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000440884		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000416682		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000429436		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000303622		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000216288		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000553942		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000335102		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
intron-intron	ENST00000586423	ENST00000561071		ChiTaRS3.1			BF083279	PSMD5-AS1	chr9	123615123	-	MARK3	chr14	103963579	-
5CDS-5UTR	ENST00000326764	ENST00000326764		ChiTaRS3.1			AB067519	LENG8	chr19	54969575	+	LENG8	chr19	54960402	+
5CDS-5UTR	ENST00000326764	ENST00000376514		ChiTaRS3.1			AB067519	LENG8	chr19	54969575	+	LENG8	chr19	54960402	+
intron-5UTR	ENST00000376514	ENST00000326764		ChiTaRS3.1			AB067519	LENG8	chr19	54969575	+	LENG8	chr19	54960402	+
intron-5UTR	ENST00000376514	ENST00000376514		ChiTaRS3.1			AB067519	LENG8	chr19	54969575	+	LENG8	chr19	54960402	+
intron-intron	ENST00000369041	ENST00000369041		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-3UTR	ENST00000369041	ENST00000483335		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369041	ENST00000271643		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369041	ENST00000369039		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369041	ENST00000369038		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
3UTR-intron	ENST00000483335	ENST00000369041		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
3UTR-3UTR	ENST00000483335	ENST00000483335		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
3UTR-intron	ENST00000483335	ENST00000271643		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
3UTR-intron	ENST00000483335	ENST00000369039		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
3UTR-intron	ENST00000483335	ENST00000369038		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000271643	ENST00000369041		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-3UTR	ENST00000271643	ENST00000483335		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000271643	ENST00000271643		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000271643	ENST00000369039		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000271643	ENST00000369038		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369039	ENST00000369041		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-3UTR	ENST00000369039	ENST00000483335		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369039	ENST00000271643		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369039	ENST00000369039		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369039	ENST00000369038		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369038	ENST00000369041		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-3UTR	ENST00000369038	ENST00000483335		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369038	ENST00000271643		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369038	ENST00000369039		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000369038	ENST00000369038		ChiTaRS3.1			EB385509	ADAMTSL4	chr1	150522740	+	ADAMTSL4	chr1	150522697	-
intron-intron	ENST00000304733	ENST00000576906		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000407558		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000608722		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000424546		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000573580		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000421765		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000610180		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000608993		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000360862		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000414063		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-3UTR	ENST00000304733	ENST00000570551		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000572942		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000576916		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000575076		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000577013		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000570819		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000304733	ENST00000572584		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000576906		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000407558		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000608722		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000424546		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000573580		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000421765		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000610180		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000608993		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000360862		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000414063		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-3UTR	ENST00000002501	ENST00000570551		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000572942		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000576916		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000575076		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000577013		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000570819		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000002501	ENST00000572584		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000576906		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000407558		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000608722		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000424546		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000573580		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000421765		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000610180		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000608993		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000360862		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000414063		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-3UTR	ENST00000392973	ENST00000570551		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000572942		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000576916		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000575076		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000577013		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000570819		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392973	ENST00000572584		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000576906		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000407558		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000608722		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000424546		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000573580		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000421765		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000610180		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000608993		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000360862		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000414063		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-3UTR	ENST00000568838	ENST00000570551		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000572942		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000576916		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000575076		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000577013		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000570819		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000568838	ENST00000572584		ChiTaRS3.1			BF733969	DBNDD1	chr16	90072158	-	NAA60	chr16	3533508	+
intron-intron	ENST00000392869	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000392869	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000409214	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000409214	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000392867	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000392867	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000409298	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000409298	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000344850	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000344850	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000542155	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000542155	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000241391	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000241391	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000463875	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000463875	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000467352	ENST00000401061		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
intron-intron	ENST00000467352	ENST00000477188		ChiTaRS3.1			AK129949	GTDC1	chr2	144883649	-	MMACHC	chr1	45977038	-
3UTR-3UTR	ENST00000392627	ENST00000392627		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000342648		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000392627	ENST00000481232		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000392629		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000392627	ENST00000582873		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000392627		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000342648		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000342648	ENST00000481232		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000392629		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000342648	ENST00000582873		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000392627		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000342648		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000481232	ENST00000481232		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000392629		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000481232	ENST00000582873		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000392627		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000342648		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-3UTR	ENST00000392629	ENST00000481232		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000392629		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
intron-intron	ENST00000392629	ENST00000582873		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000392627		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000342648		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000582873	ENST00000481232		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000392629		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-intron	ENST00000582873	ENST00000582873		ChiTaRS3.1			D82389	GPRC5C	chr17	72443205	-	GPRC5C	chr17	72443278	+
3UTR-3UTR	ENST00000373625	ENST00000373625		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
3UTR-intron	ENST00000373625	ENST00000537234		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
3UTR-intron	ENST00000373625	ENST00000469790		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
3UTR-intron	ENST00000373625	ENST00000545542		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-3UTR	ENST00000537234	ENST00000373625		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000537234	ENST00000537234		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000537234	ENST00000469790		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000537234	ENST00000545542		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-3UTR	ENST00000469790	ENST00000373625		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000469790	ENST00000537234		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000469790	ENST00000469790		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000469790	ENST00000545542		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-3UTR	ENST00000545542	ENST00000373625		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000545542	ENST00000537234		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000545542	ENST00000469790		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-intron	ENST00000545542	ENST00000545542		ChiTaRS3.1			DA569109	KPNA6	chr1	32639872	+	KPNA6	chr1	32639107	+
intron-3CDS	ENST00000357668	ENST00000264639		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
intron-3UTR	ENST00000357668	ENST00000541736		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
intron-3CDS	ENST00000518721	ENST00000264639		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
intron-3UTR	ENST00000518721	ENST00000541736		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
intron-3CDS	ENST00000520625	ENST00000264639		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
intron-3UTR	ENST00000520625	ENST00000541736		ChiTaRS3.1			BM824189	ASAP1	chr8	131124494	-	PSMD3	chr17	38153778	+
5CDS-3UTR	ENST00000392951	ENST00000392951		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000392951	ENST00000530649		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000392951	ENST00000532870		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000530649	ENST00000392951		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000530649	ENST00000530649		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000530649	ENST00000532870		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000532870	ENST00000392951		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000532870	ENST00000530649		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
5CDS-3UTR	ENST00000532870	ENST00000532870		ChiTaRS3.1			W24169	TAGLN	chr11	117075006	-	TAGLN	chr11	117075239	+
intron-intron	ENST00000476257	ENST00000281928		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000476257	ENST00000551197		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000461846	ENST00000281928		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000461846	ENST00000551197		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000264677	ENST00000281928		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000264677	ENST00000551197		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000471111	ENST00000281928		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000471111	ENST00000551197		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000465031	ENST00000281928		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-intron	ENST00000465031	ENST00000551197		ChiTaRS3.1			CK824479	SERPINI2	chr3	167173955	+	MED13L	chr12	116558166	+
intron-3CDS	ENST00000370689	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370689	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000370689	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370685	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370685	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000370685	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000394838	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000394838	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000394838	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370682	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370682	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000370682	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000394839	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000394839	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000394839	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370688	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370688	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000370688	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000470673	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000470673	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000470673	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370680	ENST00000415757		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3CDS	ENST00000370680	ENST00000389232		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-intron	ENST00000370680	ENST00000559917		ChiTaRS3.1			BF944829	PRKACB	chr1	84633057	-	RYR3	chr15	34021153	+
intron-3UTR	ENST00000421351	ENST00000296411		ChiTaRS3.1			AW352239	PERP	chr6	138412275	+	METAP1	chr4	99983570	-
intron-intron	ENST00000421351	ENST00000506548		ChiTaRS3.1			AW352239	PERP	chr6	138412275	+	METAP1	chr4	99983570	-
intron-3UTR	ENST00000421351	ENST00000544031		ChiTaRS3.1			AW352239	PERP	chr6	138412275	+	METAP1	chr4	99983570	-
3UTR-3CDS	ENST00000053867	ENST00000169298		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000053867	ENST00000457772		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000053867	ENST00000448044		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000053867	ENST00000487031		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000169298		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000457772		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000448044		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000589265	ENST00000487031		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000169298		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000457772		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000448044		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-intron	ENST00000589923	ENST00000487031		ChiTaRS3.1			AI032739	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000534336	ENST00000376279		ChiTaRS3.1			BF811509	MALAT1	chr11	65271972	-	PCCA	chr13	101171483	+
3UTR-intron	ENST00000534336	ENST00000376286		ChiTaRS3.1			BF811509	MALAT1	chr11	65271972	-	PCCA	chr13	101171483	+
3UTR-intron	ENST00000534336	ENST00000376285		ChiTaRS3.1			BF811509	MALAT1	chr11	65271972	-	PCCA	chr13	101171483	+
3UTR-intron	ENST00000534336	ENST00000485946		ChiTaRS3.1			BF811509	MALAT1	chr11	65271972	-	PCCA	chr13	101171483	+
intron-3CDS	ENST00000216190	ENST00000368708		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000216190	ENST00000487430		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000216190	ENST00000497140		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000216190	ENST00000368710		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000216190	ENST00000368709		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000216190	ENST00000368707		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000368708		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000487430		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000497140		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000368710		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000368709		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000478547	ENST00000368707		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000368708		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000487430		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000497140		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000368710		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000368709		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000541106	ENST00000368707		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000368708		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000487430		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000497140		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000368710		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000368709		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-3CDS	ENST00000405442	ENST00000368707		ChiTaRS3.1			BE122809	EIF3D	chr22	36908615	-	S100A2	chr1	153536246	-
intron-intron	ENST00000498289	ENST00000357731		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000498289	ENST00000306821		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000498289	ENST00000434200		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000498289	ENST00000467479		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000413811	ENST00000357731		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000413811	ENST00000306821		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000413811	ENST00000434200		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000413811	ENST00000467479		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000359326	ENST00000357731		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000359326	ENST00000306821		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000359326	ENST00000434200		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000359326	ENST00000467479		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000456684	ENST00000357731		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000456684	ENST00000306821		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000456684	ENST00000434200		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000456684	ENST00000467479		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000286031	ENST00000357731		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000286031	ENST00000306821		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000286031	ENST00000434200		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000286031	ENST00000467479		ChiTaRS3.1			AI140909	C1orf112	chr1	169818828	+	NEGR1	chr1	72666225	+
intron-intron	ENST00000393020	ENST00000393020		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000393020	ENST00000529221		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000393020	ENST00000314756		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000393020	ENST00000483239		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000393020	ENST00000478125		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000529221	ENST00000393020		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000529221	ENST00000529221		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000529221	ENST00000314756		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000529221	ENST00000483239		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000529221	ENST00000478125		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000314756	ENST00000393020		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000314756	ENST00000529221		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000314756	ENST00000314756		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000314756	ENST00000483239		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000314756	ENST00000478125		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000483239	ENST00000393020		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000483239	ENST00000529221		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000483239	ENST00000314756		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000483239	ENST00000483239		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000483239	ENST00000478125		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000478125	ENST00000393020		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000478125	ENST00000529221		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000478125	ENST00000314756		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000478125	ENST00000483239		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
intron-intron	ENST00000478125	ENST00000478125		ChiTaRS3.1			AA593089	TTC12	chr11	113219637	+	TTC12	chr11	113219747	-
3UTR-intron	ENST00000534336	ENST00000402452		ChiTaRS3.1			DA647149	MALAT1	chr11	65266742	+	RAD21L1	chr20	1225466	+
3UTR-intron	ENST00000534336	ENST00000409241		ChiTaRS3.1			DA647149	MALAT1	chr11	65266742	+	RAD21L1	chr20	1225466	+
3UTR-intron	ENST00000534336	ENST00000381882		ChiTaRS3.1			DA647149	MALAT1	chr11	65266742	+	RAD21L1	chr20	1225466	+
3UTR-intron	ENST00000534336	ENST00000477283		ChiTaRS3.1			DA647149	MALAT1	chr11	65266742	+	RAD21L1	chr20	1225466	+
3UTR-intron	ENST00000254663	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
intron-intron	ENST00000373332	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
3UTR-intron	ENST00000555827	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
intron-intron	ENST00000409736	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
intron-intron	ENST00000422984	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
intron-intron	ENST00000429612	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
intron-intron	ENST00000480859	ENST00000549987		ChiTaRS3.1			AA775419	SCLY	chr2	239007637	-	CHURC1-FNTB	chr14	65418105	+
3UTR-3CDS	ENST00000361365	ENST00000361365		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3CDS	ENST00000361365	ENST00000382772		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3UTR	ENST00000361365	ENST00000464196		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3CDS	ENST00000382772	ENST00000361365		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3CDS	ENST00000382772	ENST00000382772		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3UTR	ENST00000382772	ENST00000464196		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3CDS	ENST00000464196	ENST00000361365		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3CDS	ENST00000464196	ENST00000382772		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-3UTR	ENST00000464196	ENST00000464196		ChiTaRS3.1			CB241509	EIF1AY	chrY	22754344	-	EIF1AY	chrY	22751415	+
3UTR-intron	ENST00000377376	ENST00000390548		ChiTaRS3.1			AA926969	TMEM201	chr1	9674608	-	IGHG1	chr15	22524686	+
intron-intron	ENST00000340305	ENST00000390548		ChiTaRS3.1			AA926969	TMEM201	chr1	9674608	-	IGHG1	chr15	22524686	+
3UTR-intron	ENST00000340381	ENST00000390548		ChiTaRS3.1			AA926969	TMEM201	chr1	9674608	-	IGHG1	chr15	22524686	+
intron-intron	ENST00000510900	ENST00000390548		ChiTaRS3.1			AA926969	TMEM201	chr1	9674608	-	IGHG1	chr15	22524686	+
intron-intron	ENST00000217233	ENST00000430629		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
intron-intron	ENST00000217233	ENST00000536657		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
intron-intron	ENST00000485293	ENST00000430629		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
intron-intron	ENST00000485293	ENST00000536657		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
intron-intron	ENST00000422053	ENST00000430629		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
intron-intron	ENST00000422053	ENST00000536657		ChiTaRS3.1			U02019	TRIB3	chr20	375921	-	WASF2	chr1	27783598	+
In-frame	ENST00000393600	ENST00000393600		ChiTaRS3.1			BQ223609	FAM50A	chrX	153678248	-	FAM50A	chrX	153672632	+
intron-intron	ENST00000558518	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558518	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558518	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558518	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000557933	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000557933	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000557933	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000557933	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000455727	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000455727	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000455727	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000455727	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000535915	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000535915	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000535915	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000535915	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000545707	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000545707	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000545707	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000545707	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558013	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558013	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558013	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000558013	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000560628	ENST00000378330		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000560628	ENST00000301030		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000560628	ENST00000563291		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
intron-intron	ENST00000560628	ENST00000567736		ChiTaRS3.1			BF753479	LDLR	chr19	11237581	+	ANKRD11	chr16	89481379	-
3UTR-3UTR	ENST00000262134	ENST00000262134		ChiTaRS3.1			CN286009	LPCAT2	chr16	55618722	-	LPCAT2	chr16	55618734	+
3UTR-intron	ENST00000262134	ENST00000565056		ChiTaRS3.1			CN286009	LPCAT2	chr16	55618722	-	LPCAT2	chr16	55618734	+
intron-3UTR	ENST00000565056	ENST00000262134		ChiTaRS3.1			CN286009	LPCAT2	chr16	55618722	-	LPCAT2	chr16	55618734	+
intron-intron	ENST00000565056	ENST00000565056		ChiTaRS3.1			CN286009	LPCAT2	chr16	55618722	-	LPCAT2	chr16	55618734	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AM050777	AFF1	chr4	88011965	+	KMT2A	chr11	118355475	+
intron-3UTR	ENST00000426898	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000426898	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000426898	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000426898	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000426898	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000426898	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000425752	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000423947	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
intron-3UTR	ENST00000435642	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000320560	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000426898		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000425752		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000423947		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000435642		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000320560		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
3UTR-3UTR	ENST00000441606	ENST00000441606		ChiTaRS3.1			BG314859	ANO6	chr12	45824048	-	ANO6	chr12	45814896	+
Frame-shit	ENST00000509122	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000509122	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000509122	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
3UTR-3CDS	ENST00000512981	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
3UTR-intron	ENST00000512981	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
3UTR-5UTR	ENST00000512981	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000396448	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000396448	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000396448	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000264312	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000264312	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000264312	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000381473	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000381473	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000381473	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000444354	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000444354	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000444354	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000506801	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000506801	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000506801	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000425583	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000425583	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000425583	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000508293	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000508293	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000508293	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
Frame-shit	ENST00000513391	ENST00000361445		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000513391	ENST00000376838		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-5UTR	ENST00000513391	ENST00000495435		ChiTaRS3.1			DB084769	OCIAD1	chr4	48850463	+	MTOR	chr1	11194523	-
5CDS-intron	ENST00000293328	ENST00000341724		ChiTaRS3.1			BP292769	STAT5B	chr17	40359571	-	NCOA3	chr20	46269913	+
5CDS-intron	ENST00000293328	ENST00000372004		ChiTaRS3.1			BP292769	STAT5B	chr17	40359571	-	NCOA3	chr20	46269913	+
5CDS-intron	ENST00000293328	ENST00000371998		ChiTaRS3.1			BP292769	STAT5B	chr17	40359571	-	NCOA3	chr20	46269913	+
5CDS-intron	ENST00000293328	ENST00000371997		ChiTaRS3.1			BP292769	STAT5B	chr17	40359571	-	NCOA3	chr20	46269913	+
5CDS-intron	ENST00000293328	ENST00000497292		ChiTaRS3.1			BP292769	STAT5B	chr17	40359571	-	NCOA3	chr20	46269913	+
5CDS-intron	ENST00000249842	ENST00000379081		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000379087		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000379080		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000379084		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000379089		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000445726		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000297620		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000249842	ENST00000379078		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379081		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379087		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379080		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379084		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379089		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000445726		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000297620		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
5CDS-intron	ENST00000395118	ENST00000379078		ChiTaRS3.1			BE707929	ISLR	chr15	74468481	+	FAM219A	chr9	34426791	+
intron-intron	ENST00000377833	ENST00000452647		ChiTaRS3.1			BF510089	CUBN	chr10	16866071	+	TSTD3	chr6	100009516	+
intron-intron	ENST00000377823	ENST00000452647		ChiTaRS3.1			BF510089	CUBN	chr10	16866071	+	TSTD3	chr6	100009516	+
3UTR-3UTR	ENST00000261267	ENST00000602624		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
3UTR-3UTR	ENST00000261267	ENST00000375048		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
3UTR-3UTR	ENST00000261267	ENST00000415136		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
3UTR-intron	ENST00000261267	ENST00000477229		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000549690	ENST00000602624		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000549690	ENST00000375048		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000549690	ENST00000415136		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-intron	ENST00000549690	ENST00000477229		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000548839	ENST00000602624		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000548839	ENST00000375048		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-3UTR	ENST00000548839	ENST00000415136		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
intron-intron	ENST00000548839	ENST00000477229		ChiTaRS3.1			AW467499	LYZ	chr12	69747545	-	DDOST	chr1	20978613	+
5UTR-3CDS	ENST00000359882	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000359882	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000359882	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000359882	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000359882	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000359882	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000359882	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000359882	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-3CDS	ENST00000486272	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-3UTR	ENST00000486272	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-3UTR	ENST00000486272	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-intron	ENST00000486272	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-intron	ENST00000486272	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-intron	ENST00000486272	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-intron	ENST00000486272	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-intron	ENST00000486272	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3CDS	ENST00000537758	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000537758	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000537758	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000537758	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000537758	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000537758	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000537758	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000537758	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3CDS	ENST00000367574	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000367574	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000367574	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000367574	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000367574	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000367574	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000367574	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000367574	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3CDS	ENST00000355961	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000355961	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-3UTR	ENST00000355961	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000355961	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000355961	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000355961	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000355961	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
5UTR-intron	ENST00000355961	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3CDS	ENST00000361988	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000361988	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000361988	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000361988	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000361988	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000361988	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000361988	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000361988	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3CDS	ENST00000326194	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000326194	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000326194	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000326194	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000326194	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000326194	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000326194	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000326194	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3CDS	ENST00000355092	ENST00000359882		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000355092	ENST00000486272		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-3UTR	ENST00000355092	ENST00000537758		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000355092	ENST00000367574		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000355092	ENST00000355961		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000355092	ENST00000361988		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000355092	ENST00000326194		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
intron-intron	ENST00000355092	ENST00000355092		ChiTaRS3.1			L08239	PORCN	chrX	48367418	-	PORCN	chrX	48369732	+
3UTR-5UTR	ENST00000378536	ENST00000422447		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000430553		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-5UTR	ENST00000378536	ENST00000396222		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000227157		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000540430		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000379412		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
3UTR-intron	ENST00000378536	ENST00000542179		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000422447		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000430553		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-5UTR	ENST00000478223	ENST00000396222		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000227157		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000540430		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000379412		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-intron	ENST00000478223	ENST00000542179		ChiTaRS3.1			BC072009	SKI	chr1	2238670	-	LDHA	chr11	18416115	+
intron-3CDS	ENST00000526148	ENST00000335255		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-intron	ENST00000526148	ENST00000529652		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-3CDS	ENST00000525681	ENST00000335255		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-intron	ENST00000525681	ENST00000529652		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-3CDS	ENST00000339995	ENST00000335255		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-intron	ENST00000339995	ENST00000529652		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-3CDS	ENST00000396525	ENST00000335255		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-intron	ENST00000396525	ENST00000529652		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-3CDS	ENST00000525995	ENST00000335255		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-intron	ENST00000525995	ENST00000529652		ChiTaRS3.1			BE621359	EIF4G2	chr11	10823323	+	FOXK2	chr17	80525944	+
intron-3CDS	ENST00000357668	ENST00000390237		ChiTaRS3.1			BE931459	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000518721	ENST00000390237		ChiTaRS3.1			BE931459	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-3CDS	ENST00000520625	ENST00000390237		ChiTaRS3.1			BE931459	ASAP1	chr8	131156969	-	IGKC	chr2	89156874	+
intron-intron	ENST00000508736	ENST00000508736		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000508736	ENST00000548825		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000508736	ENST00000261897		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000508736	ENST00000380281		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000548825	ENST00000508736		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000548825	ENST00000548825		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000548825	ENST00000261897		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000548825	ENST00000380281		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000261897	ENST00000508736		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000261897	ENST00000548825		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000261897	ENST00000261897		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000261897	ENST00000380281		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000380281	ENST00000508736		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000380281	ENST00000548825		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000380281	ENST00000261897		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
intron-intron	ENST00000380281	ENST00000380281		ChiTaRS3.1			AA481099	PRPF40B	chr12	50033178	+	PRPF40B	chr12	50033098	-
In-frame	ENST00000389629	ENST00000389629		ChiTaRS3.1			BQ775869	RTF1	chr15	41709432	-	RTF1	chr15	41769364	+
5CDS-intron	ENST00000389629	ENST00000462276		ChiTaRS3.1			BQ775869	RTF1	chr15	41709432	-	RTF1	chr15	41769364	+
3UTR-3CDS	ENST00000462276	ENST00000389629		ChiTaRS3.1			BQ775869	RTF1	chr15	41709432	-	RTF1	chr15	41769364	+
3UTR-intron	ENST00000462276	ENST00000462276		ChiTaRS3.1			BQ775869	RTF1	chr15	41709432	-	RTF1	chr15	41769364	+
intron-intron	ENST00000443035	ENST00000443035		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000443035	ENST00000431932		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000443035	ENST00000567323		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000431932	ENST00000443035		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000431932	ENST00000431932		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000431932	ENST00000567323		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000567323	ENST00000443035		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000567323	ENST00000431932		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000567323	ENST00000567323		ChiTaRS3.1			AW888369	DENND4A	chr15	66060411	+	DENND4A	chr15	66060345	-
intron-intron	ENST00000379933	ENST00000367765		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000379933	ENST00000367767		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000379933	ENST00000361580		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000379933	ENST00000538366		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000379933	ENST00000540905		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000379933	ENST00000490550		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000367765		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000367767		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000361580		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000538366		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000540905		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
3UTR-intron	ENST00000379938	ENST00000490550		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000367765		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000367767		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000361580		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000538366		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000540905		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000334984	ENST00000490550		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000367765		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000367767		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000361580		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000538366		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000540905		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000349384	ENST00000490550		ChiTaRS3.1			BU679959	RREB1	chr6	7252147	-	KIFAP3	chr1	170003513	+
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			BI050729	INS-IGF2	chr11	2150697	+	INS-IGF2	chr11	2150433	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			BI050729	INS-IGF2	chr11	2150697	+	INS-IGF2	chr11	2150433	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			BI050729	INS-IGF2	chr11	2150697	+	INS-IGF2	chr11	2150433	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			BI050729	INS-IGF2	chr11	2150697	+	INS-IGF2	chr11	2150433	-
intron-intron	ENST00000580170	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000580170	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000580170	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000332175	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000332175	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000332175	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400060	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400060	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400060	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400053	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400053	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000400053	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000444013	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000444013	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000444013	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000578571	ENST00000327495		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000578571	ENST00000595140		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
intron-intron	ENST00000578571	ENST00000490592		ChiTaRS3.1			BF086749	PTPRM	chr18	8266020	+	PSG3	chr19	43414884	+
3UTR-3UTR	ENST00000577702	ENST00000577702		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-3UTR	ENST00000577702	ENST00000310827		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-intron	ENST00000577702	ENST00000431926		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-3UTR	ENST00000577702	ENST00000415273		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-3UTR	ENST00000310827	ENST00000577702		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-3UTR	ENST00000310827	ENST00000310827		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-intron	ENST00000310827	ENST00000431926		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
3UTR-3UTR	ENST00000310827	ENST00000415273		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000431926	ENST00000577702		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000431926	ENST00000310827		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-intron	ENST00000431926	ENST00000431926		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000431926	ENST00000415273		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000415273	ENST00000577702		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000415273	ENST00000310827		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-intron	ENST00000415273	ENST00000431926		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-3UTR	ENST00000415273	ENST00000415273		ChiTaRS3.1			DB292839	DCAF7	chr17	61670830	+	DCAF7	chr17	61666801	+
intron-intron	ENST00000380796	ENST00000498623		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000380796	ENST00000287613		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000380796	ENST00000397261		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000380796	ENST00000433034		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000474879	ENST00000498623		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000474879	ENST00000287613		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000474879	ENST00000397261		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000474879	ENST00000433034		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000216080	ENST00000498623		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000216080	ENST00000287613		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000216080	ENST00000397261		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000216080	ENST00000433034		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000505981	ENST00000498623		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000505981	ENST00000287613		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-3UTR	ENST00000505981	ENST00000397261		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
intron-intron	ENST00000505981	ENST00000433034		ChiTaRS3.1			BQ336059	LMF2	chr22	50944877	+	ARPC4	chr3	9848619	-
3UTR-3UTR	ENST00000476521	ENST00000476521		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
3UTR-3UTR	ENST00000476521	ENST00000370751		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
3UTR-3UTR	ENST00000476521	ENST00000342282		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000370751	ENST00000476521		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000370751	ENST00000370751		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000370751	ENST00000342282		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000342282	ENST00000476521		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000342282	ENST00000370751		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
5CDS-3UTR	ENST00000342282	ENST00000342282		ChiTaRS3.1			BE815069	IFI44L	chr1	79107492	+	IFI44L	chr1	79107146	-
3UTR-intron	ENST00000368407	ENST00000374825		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000496118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000580234		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000374831		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000395289		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000443797		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000395287		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000449085		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000438194		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000466744		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000383108		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000547895		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000549843		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000442863		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000552513		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000442219		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000498329		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000488549		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000425201		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000399529		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000399528		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000550142		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000548837		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000399527		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000549236		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000482105		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000414731		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000449118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000550598		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000479973		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000546777		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000450320		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000547286		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368407	ENST00000552587		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368407	ENST00000549126		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368407	ENST00000553146		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368407	ENST00000448067		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368407	ENST00000436979		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368407	ENST00000466208		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000374825		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000496118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000580234		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000374831		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000395289		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000443797		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000395287		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000449085		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000438194		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000466744		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000383108		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000547895		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000549843		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000442863		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000552513		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000442219		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000498329		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000488549		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000425201		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000399529		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000399528		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000550142		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000548837		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000399527		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000549236		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000482105		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000414731		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000449118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000550598		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000479973		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000546777		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000450320		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000547286		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368406	ENST00000552587		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368406	ENST00000549126		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368406	ENST00000553146		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368406	ENST00000448067		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-3UTR	ENST00000368406	ENST00000436979		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
3UTR-intron	ENST00000368406	ENST00000466208		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000374825		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000496118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000580234		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000374831		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000395289		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000443797		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000395287		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000449085		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000438194		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000466744		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000383108		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000547895		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000549843		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000442863		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000552513		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000442219		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000498329		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000488549		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000425201		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000399529		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000399528		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000550142		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000548837		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000399527		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000549236		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000482105		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000414731		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000449118		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000550598		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000479973		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000546777		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000450320		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000547286		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-3UTR	ENST00000469878	ENST00000552587		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-3UTR	ENST00000469878	ENST00000549126		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-3UTR	ENST00000469878	ENST00000553146		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-3UTR	ENST00000469878	ENST00000448067		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-3UTR	ENST00000469878	ENST00000436979		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000469878	ENST00000466208		ChiTaRS3.1			AI873279	EFNA1	chr1	155107009	-	BRD2	chr6	4429503	-
intron-intron	ENST00000370801	ENST00000370801		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000370801	ENST00000370798		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000370801	ENST00000476275		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000370798	ENST00000370801		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000370798	ENST00000370798		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000370798	ENST00000476275		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000476275	ENST00000370801		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000476275	ENST00000370798		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000476275	ENST00000476275		ChiTaRS3.1			AA482859	ZZZ3	chr1	78084002	-	ZZZ3	chr1	78083948	+
intron-intron	ENST00000603798	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603798	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603798	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000398453	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000398453	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000398453	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603864	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603864	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603864	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000605627	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000605627	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000605627	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603838	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603838	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000603838	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000604188	ENST00000476510		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000604188	ENST00000307126		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000604188	ENST00000307114		ChiTaRS3.1			DB445779	SMAGP	chr12	51663905	-	GTPBP2	chr6	43596799	-
intron-intron	ENST00000335742	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000335742	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000335742	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000261509	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000261509	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000261509	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000505667	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000505667	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000505667	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000333488	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000333488	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000333488	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000512127	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000512127	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000512127	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000507735	ENST00000373795		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000507735	ENST00000546138		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-intron	ENST00000507735	ENST00000466448		ChiTaRS3.1			BQ313599	PALLD	chr4	169567689	-	SRSF4	chr1	29506065	+
intron-3UTR	ENST00000330386	ENST00000370544		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000330386	ENST00000370542		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-intron	ENST00000330386	ENST00000489303		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000389561	ENST00000370544		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000389561	ENST00000370542		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-intron	ENST00000389561	ENST00000489303		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000333577	ENST00000370544		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000333577	ENST00000370542		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-intron	ENST00000333577	ENST00000489303		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000332482	ENST00000370544		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000332482	ENST00000370542		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-intron	ENST00000332482	ENST00000489303		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000389562	ENST00000370544		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000389562	ENST00000370542		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-intron	ENST00000389562	ENST00000489303		ChiTaRS3.1			AK097299	EP400	chr12	132539354	+	LMO4	chr1	87810848	+
intron-3UTR	ENST00000444837	ENST00000548052		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000444837	ENST00000551281		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000444837	ENST00000228476		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000569500	ENST00000548052		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000569500	ENST00000551281		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000569500	ENST00000228476		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000379811	ENST00000548052		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000379811	ENST00000551281		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000379811	ENST00000228476		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-3UTR	ENST00000568675	ENST00000548052		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000568675	ENST00000551281		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-5UTR	ENST00000568675	ENST00000228476		ChiTaRS3.1			AX786389	MT1G	chr16	56701975	+	DAO	chr12	109273885	+
intron-intron	ENST00000536230	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000536230	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000536230	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000536230	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000536230	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000536230	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000392282	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000538427	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000367456	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000461481	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000536230		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000392282		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000538427		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000367456		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000461481		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-intron	ENST00000286332	ENST00000286332		ChiTaRS3.1			AW855039	TAB2	chr6	149705801	-	TAB2	chr6	149705880	+
intron-3CDS	ENST00000336034	ENST00000319622		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000565184		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000389093		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000335181		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000568883		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000449901		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000565154		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000336034	ENST00000568459		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000319622		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000565184		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000389093		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000335181		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000568883		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000449901		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000565154		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000595337	ENST00000568459		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000319622		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000565184		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000389093		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000335181		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000568883		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000449901		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000565154		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000593804	ENST00000568459		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000319622		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000565184		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000389093		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000335181		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000568883		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000449901		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000565154		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000596251	ENST00000568459		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000319622		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000565184		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000389093		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000335181		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000568883		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000449901		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000565154		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
intron-3CDS	ENST00000598727	ENST00000568459		ChiTaRS3.1			AA295679	DEDD2	chr19	42712080	-	PKM	chr15	72499499	-
3UTR-3CDS	ENST00000348035	ENST00000540393		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
3UTR-3CDS	ENST00000348035	ENST00000254695		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
3UTR-3CDS	ENST00000348035	ENST00000366401		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
3UTR-3CDS	ENST00000348035	ENST00000542807		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
3UTR-intron	ENST00000348035	ENST00000574709		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000356142	ENST00000540393		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000356142	ENST00000254695		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000356142	ENST00000366401		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000356142	ENST00000542807		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-intron	ENST00000356142	ENST00000574709		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000488373	ENST00000540393		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000488373	ENST00000254695		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000488373	ENST00000366401		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-3CDS	ENST00000488373	ENST00000542807		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-intron	ENST00000488373	ENST00000574709		ChiTaRS3.1			AA149799	RAC1	chr7	6443518	-	RAP1GAP2	chr17	2898687	+
intron-intron	ENST00000356341	ENST00000341170		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000354801		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000484708		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000341170		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000354801		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000484708		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000341170		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000354801		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000484708		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000341170		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000354801		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000484708		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000341170		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000354801		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000484708		ChiTaRS3.1			AW861109	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
In-frame	ENST00000380737	ENST00000360540		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000544451		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000519559		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000380737	ENST00000522514		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000380737	ENST00000521344		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
In-frame	ENST00000315985	ENST00000360540		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000544451		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000519559		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-5UTR	ENST00000315985	ENST00000522514		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
5CDS-intron	ENST00000315985	ENST00000521344		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-3CDS	ENST00000523473	ENST00000360540		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000544451		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000519559		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-5UTR	ENST00000523473	ENST00000522514		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
3UTR-intron	ENST00000523473	ENST00000521344		ChiTaRS3.1			CF994079	PPP2R2A	chr8	26151258	+	PCMTD1	chr8	52758325	-
intron-3CDS	ENST00000531287	ENST00000389682		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000531287	ENST00000498545		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000531287	ENST00000536142		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000531287	ENST00000409193		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
Frame-shit	ENST00000531452	ENST00000389682		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000531452	ENST00000498545		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000531452	ENST00000536142		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000531452	ENST00000409193		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-3CDS	ENST00000530849	ENST00000389682		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000530849	ENST00000498545		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000530849	ENST00000536142		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000530849	ENST00000409193		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
Frame-shit	ENST00000300650	ENST00000389682		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000300650	ENST00000498545		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000300650	ENST00000536142		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
5CDS-intron	ENST00000300650	ENST00000409193		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-3CDS	ENST00000524917	ENST00000389682		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000524917	ENST00000498545		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000524917	ENST00000536142		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-intron	ENST00000524917	ENST00000409193		ChiTaRS3.1			AW802669	RNF214	chr11	117109827	+	TSN	chr2	122516311	+
intron-3CDS	ENST00000360843	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000360843	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000360843	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000360843	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000360843	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000360843	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000431350	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000431350	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000431350	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000431350	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000431350	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000431350	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000442919	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000442919	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000442919	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000442919	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000442919	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000442919	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000521943	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000521943	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000521943	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000521943	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000521943	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000521943	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000434911	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000434911	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000434911	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000434911	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000434911	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000434911	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000486857	ENST00000360843		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000486857	ENST00000431350		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000486857	ENST00000442919		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-3CDS	ENST00000486857	ENST00000521943		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000486857	ENST00000434911		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000486857	ENST00000486857		ChiTaRS3.1			AA313889	TLK1	chr2	172016840	+	TLK1	chr2	171974332	-
intron-intron	ENST00000549405	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000549405	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000549405	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000393205	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000393205	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000332156	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000332156	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000604798	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000604798	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000552808	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552808	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000548651	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000548651	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000552435	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000552435	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000538487		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000374181		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000374177		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000544773		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-5UTR	ENST00000602941	ENST00000545715		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000535756		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000609222		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
intron-intron	ENST00000602941	ENST00000455714		ChiTaRS3.1			T08449	MGAT4C	chr12	87168299	-	GRM4	chr6	33992189	-
5CDS-3UTR	ENST00000330579	ENST00000358951		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
5CDS-intron	ENST00000330579	ENST00000462353		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
intron-3UTR	ENST00000535343	ENST00000358951		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
intron-intron	ENST00000535343	ENST00000462353		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
5UTR-3UTR	ENST00000538784	ENST00000358951		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
5UTR-intron	ENST00000538784	ENST00000462353		ChiTaRS3.1			AK074489	NOC4L	chr12	132635587	+	RAB3GAP2	chr1	220324519	-
intron-intron	ENST00000395957	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395957	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395958	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000457309	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395956	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000353245	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522542	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000521309	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000522819	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395953	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395948	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000395951	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000419477	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395957		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395958		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000457309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395956		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000353245		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000522542		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000521309		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000522819		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395953		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395948		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000395951		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000419477		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-intron	ENST00000492736	ENST00000492736		ChiTaRS3.1			BF910449	YWHAZ	chr8	101942953	+	YWHAZ	chr8	101942368	-
intron-3UTR	ENST00000378119	ENST00000378119		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000378119	ENST00000540769		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-intron	ENST00000378119	ENST00000378102		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000540769	ENST00000378119		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000540769	ENST00000540769		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-intron	ENST00000540769	ENST00000378102		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000378102	ENST00000378119		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000378102	ENST00000540769		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-intron	ENST00000378102	ENST00000378102		ChiTaRS3.1			AA657779	C6orf62	chr6	24705968	-	C6orf62	chr6	24706197	+
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CA427209	IGFBP5	chr2	217541426	+	IGFBP5	chr2	217540509	+
intron-3CDS	ENST00000369626	ENST00000369626		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000369626	ENST00000538576		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000369626	ENST00000433570		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000369626	ENST00000478835		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000538576	ENST00000369626		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000538576	ENST00000538576		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000538576	ENST00000433570		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000538576	ENST00000478835		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000433570	ENST00000369626		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000433570	ENST00000538576		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000433570	ENST00000433570		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000433570	ENST00000478835		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000478835	ENST00000369626		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-3CDS	ENST00000478835	ENST00000538576		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000478835	ENST00000433570		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000478835	ENST00000478835		ChiTaRS3.1			BI335919	SLC16A1	chr1	113455988	-	SLC16A1	chr1	113456574	-
intron-intron	ENST00000525123	ENST00000442822		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000447241		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000375015		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000533191		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000527965		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000375007		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000425722		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000449847		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000427082		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000438312		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000424621		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000413045		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000399749		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000383262		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000383130		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000448986		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000547550		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000548975		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000548927		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000457429		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000525123	ENST00000451857		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000442822		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000447241		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000375015		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000533191		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000527965		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000375007		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000425722		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000449847		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000427082		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000438312		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000424621		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000413045		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000399749		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000383262		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000383130		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000448986		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000547550		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000548975		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000548927		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000457429		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000298861	ENST00000451857		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000442822		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000447241		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000375015		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000533191		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000527965		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000375007		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000425722		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000449847		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000427082		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000438312		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000424621		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000413045		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000399749		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000383262		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000383130		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000448986		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000547550		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000548975		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000548927		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000457429		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000357610	ENST00000451857		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000442822		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000447241		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000375015		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000533191		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000527965		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000375007		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000425722		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000449847		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000427082		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000438312		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000424621		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000413045		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000399749		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000383262		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000383130		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000448986		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000547550		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000548975		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000548927		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000457429		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000528244	ENST00000451857		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000442822		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000447241		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000375015		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000533191		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000527965		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000375007		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000425722		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000449847		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000427082		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000438312		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000424621		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000413045		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000399749		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000383262		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000383130		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000448986		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000547550		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000548975		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000548927		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000457429		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
intron-intron	ENST00000529712	ENST00000451857		ChiTaRS3.1			BX113229	AGBL2	chr11	47736658	-	C6orf10	chr6	3608902	-
3UTR-3UTR	ENST00000346916	ENST00000346916		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000545507		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000333511		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000353555		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000346916		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000545507		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000333511		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000353555		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000346916		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000545507		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000333511		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000353555		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000346916		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000545507		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000333511		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000353555		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000346916		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000545507		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000333511		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000353555		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			AA570609	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000520539	ENST00000541285		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000520539	ENST00000399138		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000220959	ENST00000541285		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000220959	ENST00000399138		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000518205	ENST00000541285		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000518205	ENST00000399138		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000521922	ENST00000541285		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000521922	ENST00000399138		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000519528	ENST00000541285		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-intron	ENST00000519528	ENST00000399138		ChiTaRS3.1			BQ184759	UBR5	chr8	103265889	+	ALKBH5	chr17	18101810	-
intron-3CDS	ENST00000315843	ENST00000315843		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000315843	ENST00000464295		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000315843	ENST00000461057		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000464295	ENST00000315843		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000464295	ENST00000464295		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000464295	ENST00000461057		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000461057	ENST00000315843		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000461057	ENST00000464295		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
intron-3CDS	ENST00000461057	ENST00000461057		ChiTaRS3.1			CD638219	GPR156	chr3	119963126	+	GPR156	chr3	119900210	-
3UTR-intron	ENST00000373509	ENST00000369983		ChiTaRS3.1			AI536729	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
3UTR-intron	ENST00000373509	ENST00000476019		ChiTaRS3.1			AI536729	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-intron	ENST00000468243	ENST00000369983		ChiTaRS3.1			AI536729	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-intron	ENST00000468243	ENST00000476019		ChiTaRS3.1			AI536729	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-intron	ENST00000322366	ENST00000322366		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000322366	ENST00000295888		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000322366	ENST00000512267		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000295888	ENST00000322366		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000295888	ENST00000295888		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000295888	ENST00000512267		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000512267	ENST00000322366		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000512267	ENST00000295888		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-intron	ENST00000512267	ENST00000512267		ChiTaRS3.1			AA427969	WDFY3	chr4	85843108	-	WDFY3	chr4	85844891	-
intron-3UTR	ENST00000348165	ENST00000472232		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-intron	ENST00000348165	ENST00000467389		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-intron	ENST00000348165	ENST00000379704		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-3UTR	ENST00000389103	ENST00000472232		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-intron	ENST00000389103	ENST00000467389		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-intron	ENST00000389103	ENST00000379704		ChiTaRS3.1			BE884609	UBE3C	chr7	156968887	+	BAG1	chr9	33253909	-
intron-3UTR	ENST00000395290	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395290	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000358597	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000358597	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000395292	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000395292	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000310513	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000310513	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000361904	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000361904	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000539455	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000539455	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000531165	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000531165	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-3UTR	ENST00000532048	ENST00000395290		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000358597		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000395292		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000310513		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000361904		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000539455		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000531165		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000532048	ENST00000532048		ChiTaRS3.1			CB250469	CELF1	chr11	47488301	+	CELF1	chr11	47488363	-
intron-intron	ENST00000304992	ENST00000438045		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000304992	ENST00000248633		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000304992	ENST00000428214		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000304992	ENST00000541751		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000572621	ENST00000438045		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000572621	ENST00000248633		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000572621	ENST00000428214		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000572621	ENST00000541751		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000575116	ENST00000438045		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000575116	ENST00000248633		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000575116	ENST00000428214		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-intron	ENST00000575116	ENST00000541751		ChiTaRS3.1			AA491159	PRPF8	chr17	1577636	-	PEX1	chr7	92122702	-
intron-5UTR	ENST00000234590	ENST00000540468		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-5UTR	ENST00000234590	ENST00000539919		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-5UTR	ENST00000234590	ENST00000258091		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-5UTR	ENST00000234590	ENST00000398422		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-5UTR	ENST00000234590	ENST00000537131		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-5UTR	ENST00000234590	ENST00000538797		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-intron	ENST00000234590	ENST00000473786		ChiTaRS3.1			BQ646179	ENO1	chr1	8923343	+	CCT7	chr2	73461450	+
intron-intron	ENST00000522684	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522684	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522684	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522684	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000535192	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000535192	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000535192	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000535192	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519465	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519465	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519465	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519465	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517887	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517887	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517887	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517887	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000521059	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000521059	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000521059	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000521059	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000395218	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000395218	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000395218	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000395218	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000538769	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000538769	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000538769	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000538769	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000340930	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000340930	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000340930	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000340930	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519419	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519419	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519419	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519419	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000430260	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000430260	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000430260	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000430260	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519881	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519881	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519881	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519881	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520892	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520892	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520892	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520892	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519635	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519635	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519635	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000519635	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517712	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517712	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517712	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000517712	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522950	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522950	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522950	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000522950	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520151	ENST00000393043		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520151	ENST00000269122		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520151	ENST00000579456		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
intron-intron	ENST00000520151	ENST00000579815		ChiTaRS3.1			AW378979	PTK2	chr8	141669344	-	CLTC	chr17	57710101	-
Frame-shit	ENST00000379802	ENST00000379802		ChiTaRS3.1			AA847709	DSP	chr6	7585704	+	DSP	chr6	7585793	-
In-frame	ENST00000379802	ENST00000418664		ChiTaRS3.1			AA847709	DSP	chr6	7585704	+	DSP	chr6	7585793	-
In-frame	ENST00000418664	ENST00000379802		ChiTaRS3.1			AA847709	DSP	chr6	7585704	+	DSP	chr6	7585793	-
Frame-shit	ENST00000418664	ENST00000418664		ChiTaRS3.1			AA847709	DSP	chr6	7585704	+	DSP	chr6	7585793	-
intron-intron	ENST00000440491	ENST00000426301		ChiTaRS3.1			BC005949	NBPF9	chr1	144676874	-	LINC00623	chr1	149591233	-
intron-intron	ENST00000338347	ENST00000426301		ChiTaRS3.1			BC005949	NBPF9	chr1	144676874	-	LINC00623	chr1	149591233	-
intron-intron	ENST00000468645	ENST00000426301		ChiTaRS3.1			BC005949	NBPF9	chr1	144676874	-	LINC00623	chr1	149591233	-
intron-intron	ENST00000281815	ENST00000426301		ChiTaRS3.1			BC005949	NBPF9	chr1	144676874	-	LINC00623	chr1	149591233	-
intron-intron	ENST00000337907	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000337907	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000337907	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000337907	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000337907	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000337907	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000377464	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400907	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000400908	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000476556	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000337907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000377464		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000400907		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000400908		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000476556		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-intron	ENST00000460659	ENST00000460659		ChiTaRS3.1			AW235269	RERE	chr1	8840011	+	RERE	chr1	8834680	+
intron-3CDS	ENST00000390168	ENST00000310421		ChiTaRS3.1			DA444649	H19	chr11	2018562	-	VCPIP1	chr8	67546796	-
3UTR-3CDS	ENST00000482108	ENST00000316403		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
3UTR-3CDS	ENST00000482108	ENST00000546343		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
3UTR-3CDS	ENST00000482108	ENST00000560366		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
3UTR-3CDS	ENST00000482108	ENST00000405140		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
3UTR-3CDS	ENST00000482108	ENST00000523500		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000488574	ENST00000316403		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000488574	ENST00000546343		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000488574	ENST00000560366		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000488574	ENST00000405140		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000488574	ENST00000523500		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000465184	ENST00000316403		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000465184	ENST00000546343		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000465184	ENST00000560366		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000465184	ENST00000405140		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-3CDS	ENST00000465184	ENST00000523500		ChiTaRS3.1			DR978309	PEG10	chr7	94298579	-	CLU	chr8	27466587	-
intron-intron	ENST00000542515	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000279147	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000536870	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000535657	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000539414	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000542341	ENST00000609129		ChiTaRS3.1			BE142879	ORAOV1	chr11	69480895	-	ZBTB8B	chr1	32972985	-
intron-intron	ENST00000437089	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000437089	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000437089	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000437089	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000454678	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000454678	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000454678	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000454678	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000453195	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000453195	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000453195	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000453195	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000487829	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000487829	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000487829	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000487829	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456770	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456770	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456770	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456770	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000439094	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000439094	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000439094	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000439094	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425523	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425523	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425523	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425523	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000484938	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000484938	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000484938	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000484938	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438908	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438908	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438908	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438908	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000455000	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000455000	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000455000	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000455000	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000436219	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000436219	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000436219	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000436219	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000475230	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000475230	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000475230	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000475230	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000433314	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000433314	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000433314	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000433314	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000447711	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000447711	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000447711	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000447711	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456093	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456093	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456093	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000456093	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000486529	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000486529	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000486529	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000486529	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438384	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438384	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438384	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000438384	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000432326	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000432326	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000432326	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000432326	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425831	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425831	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425831	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000425831	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000481596	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000481596	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000481596	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000481596	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000463977	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000463977	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000463977	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000463977	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000383607	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000383607	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000383607	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000383607	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000327357	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000327357	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000327357	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000327357	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000396558	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000396558	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000396558	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000396558	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000450392	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000450392	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000450392	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000450392	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000415923	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000415923	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000415923	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000415923	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000428486	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000428486	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000428486	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000428486	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477569	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477569	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477569	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477569	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000422349	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000422349	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000422349	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000422349	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000445259	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000445259	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000445259	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000445259	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000427535	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000427535	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000427535	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000427535	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477353	ENST00000373635		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477353	ENST00000308696		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477353	ENST00000409643		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000477353	ENST00000488354		ChiTaRS3.1			BE769099	TRIM26	chr6	1445492	+	PSMD1	chr2	232035604	-
intron-intron	ENST00000376861	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376861	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000334668	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000259951	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440587	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000434407	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000475996	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000342322	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552082	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551026	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383516	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383515	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000496199	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422711	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551832	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549067	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000428296	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000420067	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000485297	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000422439	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490874	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383626	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000550932	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000547132	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000383627	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000359076	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000489167	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000435058	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551780	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000551347	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000445657	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000440590	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000490259	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000444891	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549422	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000552880	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000549254	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000430472	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000376848	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000340208		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000424173		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000504921		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000514028		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000437473		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000510942		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000506554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000508569		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000514015		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000539796		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-intron	ENST00000463731	ENST00000503554		ChiTaRS3.1			AW801119	HLA-F	chr6	1292963	-	MEF2C	chr5	88100417	+
intron-3CDS	ENST00000268616	ENST00000268616		ChiTaRS3.1			AL044069	ZCCHC14	chr16	87445203	+	ZCCHC14	chr16	87443934	-
intron-3UTR	ENST00000336866	ENST00000368354		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000336866	ENST00000368352		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000336866	ENST00000368347		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-intron	ENST00000336866	ENST00000462780		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000336866	ENST00000368349		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000336866	ENST00000292254		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000355631	ENST00000368354		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000355631	ENST00000368352		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000355631	ENST00000368347		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-intron	ENST00000355631	ENST00000462780		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000355631	ENST00000368349		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000355631	ENST00000292254		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000349451	ENST00000368354		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000349451	ENST00000368352		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000349451	ENST00000368347		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-intron	ENST00000349451	ENST00000462780		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000349451	ENST00000368349		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
intron-3UTR	ENST00000349451	ENST00000292254		ChiTaRS3.1			BI051049	OPRL1	chr20	62728090	+	RUSC1	chr1	155300751	+
5CDS-intron	ENST00000354179	ENST00000508802		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000261439		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000402522		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000354179	ENST00000407365		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000508802		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000261439		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000402522		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000439151	ENST00000407365		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000508802		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000261439		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000402522		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000347982	ENST00000407365		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000508802		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000261439		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000402522		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
5CDS-intron	ENST00000361032	ENST00000407365		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000508802		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000261439		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000402522		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-intron	ENST00000511258	ENST00000407365		ChiTaRS3.1			BF369639	NSD1	chr5	176638362	-	TBC1D1	chr4	38001722	-
intron-3UTR	ENST00000375820	ENST00000375820		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000375820	ENST00000543140		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000375820	ENST00000467182		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-3UTR	ENST00000543140	ENST00000375820		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000543140	ENST00000543140		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000543140	ENST00000467182		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-3UTR	ENST00000467182	ENST00000375820		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000467182	ENST00000543140		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000467182	ENST00000467182		ChiTaRS3.1			BF911869	COL4A1	chr13	110801739	-	COL4A1	chr13	110801827	+
intron-intron	ENST00000356175	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000356175	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000358273	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000358273	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000431387	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000431387	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000581113	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000581113	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000417592	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000417592	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000444181	ENST00000314616		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-intron	ENST00000444181	ENST00000347486		ChiTaRS3.1			DA165529	NF1	chr17	29605186	-	SUPT6H	chr17	27022348	+
intron-5UTR	ENST00000476510	ENST00000476510		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-3UTR	ENST00000476510	ENST00000307126		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-intron	ENST00000476510	ENST00000307114		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-5UTR	ENST00000307126	ENST00000476510		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-3UTR	ENST00000307126	ENST00000307126		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-intron	ENST00000307126	ENST00000307114		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-5UTR	ENST00000307114	ENST00000476510		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-3UTR	ENST00000307114	ENST00000307126		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-intron	ENST00000307114	ENST00000307114		ChiTaRS3.1			BQ327509	GTPBP2	chr6	43592752	+	GTPBP2	chr6	43588769	+
intron-3UTR	ENST00000360001	ENST00000360001		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000360001	ENST00000263741		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000360001	ENST00000545427		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000360001	ENST00000459994		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000263741	ENST00000360001		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000263741	ENST00000263741		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000263741	ENST00000545427		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000263741	ENST00000459994		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000545427	ENST00000360001		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000545427	ENST00000263741		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000545427	ENST00000545427		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000545427	ENST00000459994		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000459994	ENST00000360001		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-3UTR	ENST00000459994	ENST00000263741		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000459994	ENST00000545427		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000459994	ENST00000459994		ChiTaRS3.1			BF515249	SDF4	chr1	1152563	+	SDF4	chr1	1152530	-
intron-intron	ENST00000384994	ENST00000382264		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000382241		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000404220		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000342136		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000420068		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000342101		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-intron	ENST00000384994	ENST00000413881		ChiTaRS3.1			BF848469	NEAT1	chr11	65207789	-	IFNAR2	chr21	34609858	+
intron-3UTR	ENST00000261556	ENST00000239231		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-intron	ENST00000261556	ENST00000520504		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-3UTR	ENST00000536419	ENST00000239231		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-intron	ENST00000536419	ENST00000520504		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-3UTR	ENST00000538838	ENST00000239231		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-intron	ENST00000538838	ENST00000520504		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-3UTR	ENST00000553335	ENST00000239231		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-intron	ENST00000553335	ENST00000520504		ChiTaRS3.1			BQ639489	TMEM260	chr14	57076605	+	PANK3	chr5	167976777	-
intron-intron	ENST00000414441	ENST00000414441		ChiTaRS3.1			BQ224979	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
intron-intron	ENST00000414441	ENST00000310512		ChiTaRS3.1			BQ224979	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
5CDS-intron	ENST00000310512	ENST00000414441		ChiTaRS3.1			BQ224979	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
5CDS-intron	ENST00000310512	ENST00000310512		ChiTaRS3.1			BQ224979	MEPCE	chr7	100027728	+	MEPCE	chr7	100027694	-
3UTR-intron	ENST00000540687	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000540687	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000540687	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000540687	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000566220	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000566220	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000566220	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000566220	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000519077	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000519077	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000519077	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000519077	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000521091	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000521091	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000521091	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000521091	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000569149	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000569149	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000569149	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000569149	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000563812	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000563812	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000563812	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000563812	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000602393	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000602393	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000602393	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000602393	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000602971	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000602971	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000602971	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000602971	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000569384	ENST00000293217		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000569384	ENST00000537812		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000569384	ENST00000301608		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
intron-intron	ENST00000569384	ENST00000591857		ChiTaRS3.1			AK025129	TUG1	chr22	31368887	-	ACOX1	chr17	73970579	-
3UTR-intron	ENST00000338432	ENST00000443891		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-3UTR	ENST00000338432	ENST00000273062		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-intron	ENST00000338432	ENST00000488627		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-intron	ENST00000377854	ENST00000443891		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-3UTR	ENST00000377854	ENST00000273062		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-intron	ENST00000377854	ENST00000488627		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-intron	ENST00000377848	ENST00000443891		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-3UTR	ENST00000377848	ENST00000273062		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
3UTR-intron	ENST00000377848	ENST00000488627		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-intron	ENST00000543080	ENST00000443891		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-3UTR	ENST00000543080	ENST00000273062		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-intron	ENST00000543080	ENST00000488627		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-intron	ENST00000543201	ENST00000443891		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-3UTR	ENST00000543201	ENST00000273062		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-intron	ENST00000543201	ENST00000488627		ChiTaRS3.1			BM989099	ACACB	chr12	109705904	-	CTDSP1	chr2	219270373	+
intron-intron	ENST00000507866	ENST00000328089		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000507866	ENST00000357898		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000507866	ENST00000377399		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000511199	ENST00000328089		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000511199	ENST00000357898		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000511199	ENST00000377399		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000329016	ENST00000328089		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000329016	ENST00000357898		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
intron-intron	ENST00000329016	ENST00000377399		ChiTaRS3.1			BF854699	SORCS2	chr4	7705143	-	SPSB1	chr1	9365320	-
3UTR-3UTR	ENST00000271277	ENST00000271277		ChiTaRS3.1			D82289	CTTNBP2NL	chr1	113002070	-	CTTNBP2NL	chr1	113002100	+
3UTR-intron	ENST00000271277	ENST00000607039		ChiTaRS3.1			D82289	CTTNBP2NL	chr1	113002070	-	CTTNBP2NL	chr1	113002100	+
intron-3UTR	ENST00000607039	ENST00000271277		ChiTaRS3.1			D82289	CTTNBP2NL	chr1	113002070	-	CTTNBP2NL	chr1	113002100	+
intron-intron	ENST00000607039	ENST00000607039		ChiTaRS3.1			D82289	CTTNBP2NL	chr1	113002070	-	CTTNBP2NL	chr1	113002100	+
5CDS-3UTR	ENST00000370651	ENST00000370651		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-3UTR	ENST00000370651	ENST00000370650		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-intron	ENST00000370651	ENST00000578299		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-intron	ENST00000370651	ENST00000473334		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-3UTR	ENST00000370650	ENST00000370651		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-3UTR	ENST00000370650	ENST00000370650		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-intron	ENST00000370650	ENST00000578299		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
5CDS-intron	ENST00000370650	ENST00000473334		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-3UTR	ENST00000578299	ENST00000370651		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-3UTR	ENST00000578299	ENST00000370650		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-intron	ENST00000578299	ENST00000578299		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-intron	ENST00000578299	ENST00000473334		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-3UTR	ENST00000473334	ENST00000370651		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-3UTR	ENST00000473334	ENST00000370650		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-intron	ENST00000473334	ENST00000578299		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
intron-intron	ENST00000473334	ENST00000473334		ChiTaRS3.1			BE069169	PTP4A1	chr6	64289988	-	PTP4A1	chr6	64290442	-
3UTR-3CDS	ENST00000300527	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
3UTR-3CDS	ENST00000300527	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
3UTR-intron	ENST00000300527	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000310645	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000310645	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-intron	ENST00000310645	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000357838	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000357838	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-intron	ENST00000357838	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000409416	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000409416	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-intron	ENST00000409416	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000397763	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000397763	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-intron	ENST00000397763	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000460886	ENST00000295989		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-3CDS	ENST00000460886	ENST00000456430		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-intron	ENST00000460886	ENST00000466558		ChiTaRS3.1			AI093179	COL6A2	chr21	47552685	-	CAND2	chr3	12858495	-
intron-5UTR	ENST00000396432	ENST00000396432		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000396432	ENST00000320481		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000396432	ENST00000493154		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-5UTR	ENST00000320481	ENST00000396432		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000320481	ENST00000320481		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000320481	ENST00000493154		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-5UTR	ENST00000493154	ENST00000396432		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000493154	ENST00000320481		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
intron-intron	ENST00000493154	ENST00000493154		ChiTaRS3.1			AK074589	ARHGAP21	chr10	24873382	-	ARHGAP21	chr10	25010963	-
In-frame	ENST00000327367	ENST00000261880		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000327367	ENST00000538028		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000327367	ENST00000561452		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000327367	ENST00000542650		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
intron-3CDS	ENST00000559092	ENST00000261880		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
intron-5UTR	ENST00000559092	ENST00000538028		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
intron-5UTR	ENST00000559092	ENST00000561452		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
intron-5UTR	ENST00000559092	ENST00000542650		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
In-frame	ENST00000540846	ENST00000261880		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000540846	ENST00000538028		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000540846	ENST00000561452		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000540846	ENST00000542650		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
In-frame	ENST00000439724	ENST00000261880		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000439724	ENST00000538028		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000439724	ENST00000561452		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000439724	ENST00000542650		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
In-frame	ENST00000537194	ENST00000261880		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000537194	ENST00000538028		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000537194	ENST00000561452		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-5UTR	ENST00000537194	ENST00000542650		ChiTaRS3.1			CX866999	SMAD3	chr15	67462942	+	AAGAB	chr15	67501883	-
5CDS-intron	ENST00000564088	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000564088	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000564088	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000564088	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000382450	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000382450	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000382450	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000382450	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000569417	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000569417	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000569417	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000569417	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
intron-intron	ENST00000561651	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
intron-intron	ENST00000561651	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
intron-intron	ENST00000561651	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
intron-intron	ENST00000561651	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000301724	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000301724	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000301724	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000301724	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000397124	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000397124	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000397124	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000397124	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000565250	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000565250	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000565250	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
5CDS-intron	ENST00000565250	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
3UTR-intron	ENST00000301725	ENST00000397224		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
3UTR-intron	ENST00000301725	ENST00000216187		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
3UTR-intron	ENST00000301725	ENST00000366463		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
3UTR-intron	ENST00000301725	ENST00000397223		ChiTaRS3.1			BF813029	MLST8	chr16	2258580	+	FOXRED2	chr22	36887398	+
intron-intron	ENST00000390548	ENST00000264211		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000400422		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000602326		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000374935		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000374937		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000536266		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000374933		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000544689		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000356916		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000374927		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
intron-intron	ENST00000390548	ENST00000537738		ChiTaRS3.1			BE928189	IGHG1	chr14	106174703	-	EIF4G3	chr1	21483705	+
3UTR-3CDS	ENST00000432069	ENST00000521746		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3CDS	ENST00000432069	ENST00000420274		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3UTR	ENST00000432069	ENST00000388745		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3CDS	ENST00000564053	ENST00000521746		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3CDS	ENST00000564053	ENST00000420274		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3UTR	ENST00000564053	ENST00000388745		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3CDS	ENST00000568199	ENST00000521746		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3CDS	ENST00000568199	ENST00000420274		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-3UTR	ENST00000568199	ENST00000388745		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3CDS	ENST00000268605	ENST00000521746		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3CDS	ENST00000268605	ENST00000420274		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3UTR	ENST00000268605	ENST00000388745		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3CDS	ENST00000568146	ENST00000521746		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3CDS	ENST00000568146	ENST00000420274		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
3UTR-3UTR	ENST00000568146	ENST00000388745		ChiTaRS3.1			AA962119	NOL3	chr16	67209426	-	PLEKHA2	chr8	38808416	-
intron-intron	ENST00000370918	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370918	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000304434	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000542638	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000541407	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000486973	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000237247		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371039		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371035		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000468286		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371036		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000371037		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-intron	ENST00000370913	ENST00000435165		ChiTaRS3.1			BE929559	ELOVL5	chr6	53133172	+	SGIP1	chr1	67175153	+
intron-3UTR	ENST00000442283	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000442283	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000442283	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000318218	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000318218	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000522463	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000522463	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000521420	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000521420	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000347377	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000347377	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000377576	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000377576	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000541131	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000541131	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-3UTR	ENST00000435847	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
3UTR-intron	ENST00000435847	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000442283		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000318218		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000522463		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000521420		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000347377		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000377576		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000541131		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-3UTR	ENST00000520960	ENST00000435847		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000520960	ENST00000520960		ChiTaRS3.1			AA093879	CYFIP2	chr5	156820311	+	CYFIP2	chr5	156817565	+
intron-intron	ENST00000424085	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000424085	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000257075	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373747	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000426105	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000440538	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373741	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000423018	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000373742	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000424082		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000259351		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000394022		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000373436		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000373434		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000394011		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
intron-intron	ENST00000490546	ENST00000480993		ChiTaRS3.1			BE177869	PUM1	chr1	31404867	+	RALGPS1	chr9	129720273	-
5CDS-intron	ENST00000535016	ENST00000358716		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000535016	ENST00000382422		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000535016	ENST00000360310		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000535016	ENST00000553853		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000265872	ENST00000358716		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000265872	ENST00000382422		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000265872	ENST00000360310		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000265872	ENST00000553853		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000543719	ENST00000358716		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000543719	ENST00000382422		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000543719	ENST00000360310		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000543719	ENST00000553853		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000483264	ENST00000358716		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000483264	ENST00000382422		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000483264	ENST00000360310		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
5CDS-intron	ENST00000483264	ENST00000553853		ChiTaRS3.1			AI914719	CCAR1	chr10	70517059	-	BAZ1A	chr14	35315159	-
intron-5UTR	ENST00000345807	ENST00000345807		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-5UTR	ENST00000345807	ENST00000310418		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-intron	ENST00000345807	ENST00000509319		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-5UTR	ENST00000310418	ENST00000345807		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-5UTR	ENST00000310418	ENST00000310418		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-intron	ENST00000310418	ENST00000509319		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-5UTR	ENST00000509319	ENST00000345807		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-5UTR	ENST00000509319	ENST00000310418		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-intron	ENST00000509319	ENST00000509319		ChiTaRS3.1			M20469	CLTB	chr5	175843530	+	CLTB	chr5	175843472	-
intron-3UTR	ENST00000346145	ENST00000317897		ChiTaRS3.1			BQ689139	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000349607	ENST00000317897		ChiTaRS3.1			BQ689139	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000463781	ENST00000317897		ChiTaRS3.1			BQ689139	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000475231	ENST00000317897		ChiTaRS3.1			BQ689139	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-3UTR	ENST00000478685	ENST00000317897		ChiTaRS3.1			BQ689139	MUC4	chr3	195515054	-	MAGEF1	chr3	184428499	-
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266514	FLI1	chr11	128678882	+	EWSR1	chr22	29684048	+
intron-intron	ENST00000390548	ENST00000268035		ChiTaRS3.1			AW000759	IGHG1	chr22	23237948	-	IGF1R	chr15	99352478	+
intron-intron	ENST00000390548	ENST00000558762		ChiTaRS3.1			AW000759	IGHG1	chr22	23237948	-	IGF1R	chr15	99352478	+
intron-intron	ENST00000390548	ENST00000560432		ChiTaRS3.1			AW000759	IGHG1	chr22	23237948	-	IGF1R	chr15	99352478	+
3UTR-3UTR	ENST00000407597	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000407597	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000407597	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000407597	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000407597	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000407597	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000424279	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000424279	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000424279	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000424279	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000424279	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000424279	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000536365	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000536365	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000536365	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000536365	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000536365	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000536365	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000380961	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000380961	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000380961	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000380961	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000380961	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000380961	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000217964	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000217964	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000217964	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000217964	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3UTR	ENST00000217964	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-intron	ENST00000217964	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000497555	ENST00000407597		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000497555	ENST00000424279		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000497555	ENST00000536365		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000497555	ENST00000380961		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-3UTR	ENST00000497555	ENST00000217964		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
intron-intron	ENST00000497555	ENST00000497555		ChiTaRS3.1			AI129599	TBL1X	chrX	9686765	-	TBL1X	chrX	9686945	+
3UTR-3CDS	ENST00000227348	ENST00000331925		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000227348	ENST00000573283		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000227348	ENST00000575842		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000227348	ENST00000575087		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000533709	ENST00000331925		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000533709	ENST00000573283		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000533709	ENST00000575842		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
3UTR-3CDS	ENST00000533709	ENST00000575087		ChiTaRS3.1			BG272679	CRTAM	chr11	122743246	-	ACTG1	chr17	79479046	-
intron-3CDS	ENST00000446488	ENST00000446488		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000446488	ENST00000304521		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000446488	ENST00000524794		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000446488	ENST00000524746		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-intron	ENST00000446488	ENST00000526940		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000304521	ENST00000446488		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000304521	ENST00000304521		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000304521	ENST00000524794		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000304521	ENST00000524746		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-intron	ENST00000304521	ENST00000526940		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524794	ENST00000446488		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524794	ENST00000304521		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524794	ENST00000524794		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524794	ENST00000524746		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-intron	ENST00000524794	ENST00000526940		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524746	ENST00000446488		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524746	ENST00000304521		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524746	ENST00000524794		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000524746	ENST00000524746		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-intron	ENST00000524746	ENST00000526940		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000526940	ENST00000446488		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000526940	ENST00000304521		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000526940	ENST00000524794		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000526940	ENST00000524746		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-intron	ENST00000526940	ENST00000526940		ChiTaRS3.1			BE005889	NFRKB	chr11	129739601	+	NFRKB	chr11	129734629	-
intron-3CDS	ENST00000370206	ENST00000370206		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000370206	ENST00000538964		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000370206	ENST00000394202		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000370206	ENST00000545882		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-5UTR	ENST00000370206	ENST00000487539		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000538964	ENST00000370206		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000538964	ENST00000538964		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000538964	ENST00000394202		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000538964	ENST00000545882		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-5UTR	ENST00000538964	ENST00000487539		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000394202	ENST00000370206		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000394202	ENST00000538964		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000394202	ENST00000394202		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000394202	ENST00000545882		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-5UTR	ENST00000394202	ENST00000487539		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000545882	ENST00000370206		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000545882	ENST00000538964		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000545882	ENST00000394202		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000545882	ENST00000545882		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-5UTR	ENST00000545882	ENST00000487539		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000487539	ENST00000370206		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000487539	ENST00000538964		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000487539	ENST00000394202		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-3CDS	ENST00000487539	ENST00000545882		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
intron-5UTR	ENST00000487539	ENST00000487539		ChiTaRS3.1			AA640449	CNN3	chr1	95365008	-	CNN3	chr1	95364933	+
In-frame	ENST00000591462	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000591462	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000591462	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000591462	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000591462	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000591462	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000591462	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000252455	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000252455	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000412601	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000412601	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000592741	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000592741	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000587327	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000587327	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
In-frame	ENST00000589838	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
5CDS-intron	ENST00000589838	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000591462		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000252455		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000412601		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000592741		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000587327		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-3CDS	ENST00000591510	ENST00000589838		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-intron	ENST00000591510	ENST00000591510		ChiTaRS3.1			AU120749	PRKCSH	chr19	11560138	+	PRKCSH	chr19	11547220	+
intron-intron	ENST00000368911	ENST00000368911		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000368911	ENST00000323817		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000368911	ENST00000413605		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000368911	ENST00000497709		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000323817	ENST00000368911		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000323817	ENST00000323817		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000323817	ENST00000413605		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000323817	ENST00000497709		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000413605	ENST00000368911		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000413605	ENST00000323817		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000413605	ENST00000413605		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000413605	ENST00000497709		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000497709	ENST00000368911		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000497709	ENST00000323817		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000497709	ENST00000413605		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
intron-intron	ENST00000497709	ENST00000497709		ChiTaRS3.1			CD654079	CDK19	chr6	110975934	+	CDK19	chr6	110972244	+
3UTR-3CDS	ENST00000536169	ENST00000358252		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-3CDS	ENST00000536169	ENST00000532437		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-intron	ENST00000536169	ENST00000530920		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-3CDS	ENST00000374051	ENST00000358252		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-3CDS	ENST00000374051	ENST00000532437		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-intron	ENST00000374051	ENST00000530920		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
intron-3CDS	ENST00000358741	ENST00000358252		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
intron-3CDS	ENST00000358741	ENST00000532437		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
intron-intron	ENST00000358741	ENST00000530920		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-3CDS	ENST00000476589	ENST00000358252		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-3CDS	ENST00000476589	ENST00000532437		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
3UTR-intron	ENST00000476589	ENST00000530920		ChiTaRS3.1			BF950679	NLGN3	chrX	70390280	-	TNKS1BP1	chr11	57076671	-
intron-3CDS	ENST00000358077	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000358077	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000358077	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000472284	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000472284	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000472284	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000469640	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000469640	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000469640	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000408954	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000408954	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000408954	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000491893	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000491893	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000491893	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000466188	ENST00000233557		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000466188	ENST00000379852		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-3CDS	ENST00000466188	ENST00000379863		ChiTaRS3.1			W79389	DAPK1	chr9	90140269	-	NRBP1	chr2	27662728	-
intron-intron	ENST00000348165	ENST00000348165		ChiTaRS3.1			AA325349	UBE3C	chr7	156960649	+	UBE3C	chr7	156959880	+
intron-intron	ENST00000348165	ENST00000389103		ChiTaRS3.1			AA325349	UBE3C	chr7	156960649	+	UBE3C	chr7	156959880	+
intron-intron	ENST00000389103	ENST00000348165		ChiTaRS3.1			AA325349	UBE3C	chr7	156960649	+	UBE3C	chr7	156959880	+
intron-intron	ENST00000389103	ENST00000389103		ChiTaRS3.1			AA325349	UBE3C	chr7	156960649	+	UBE3C	chr7	156959880	+
5CDS-intron	ENST00000530675	ENST00000299240		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000530675	ENST00000039989		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000530675	ENST00000526774		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000227758	ENST00000299240		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000227758	ENST00000039989		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000227758	ENST00000526774		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000532672	ENST00000299240		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000532672	ENST00000039989		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
5CDS-intron	ENST00000532672	ENST00000526774		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
3UTR-intron	ENST00000527910	ENST00000299240		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
3UTR-intron	ENST00000527910	ENST00000039989		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
3UTR-intron	ENST00000527910	ENST00000526774		ChiTaRS3.1			AF207599	BIRC2	chr11	102248448	+	TTC17	chr11	43514845	+
intron-3UTR	ENST00000223029	ENST00000199389		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-3UTR	ENST00000223029	ENST00000536084		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-intron	ENST00000223029	ENST00000495565		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-3UTR	ENST00000400479	ENST00000199389		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-3UTR	ENST00000400479	ENST00000536084		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-intron	ENST00000400479	ENST00000495565		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-3UTR	ENST00000395236	ENST00000199389		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-3UTR	ENST00000395236	ENST00000536084		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
intron-intron	ENST00000395236	ENST00000495565		ChiTaRS3.1			CB243839	AIMP2	chr7	6063580	+	EIF2AK1	chr7	6063675	-
3UTR-3UTR	ENST00000343017	ENST00000343017		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
3UTR-intron	ENST00000343017	ENST00000326277		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
3UTR-3UTR	ENST00000343017	ENST00000381410		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
intron-3UTR	ENST00000326277	ENST00000343017		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
intron-intron	ENST00000326277	ENST00000326277		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
intron-3UTR	ENST00000326277	ENST00000381410		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
3UTR-3UTR	ENST00000381410	ENST00000343017		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
3UTR-intron	ENST00000381410	ENST00000326277		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
3UTR-3UTR	ENST00000381410	ENST00000381410		ChiTaRS3.1			AA736809	SNX18	chr5	53841215	+	SNX18	chr5	53841192	-
intron-3UTR	ENST00000371837	ENST00000357992		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000371837	ENST00000289703		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000371837	ENST00000468523		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-3UTR	ENST00000487618	ENST00000357992		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000487618	ENST00000289703		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000487618	ENST00000468523		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-3UTR	ENST00000336233	ENST00000357992		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000336233	ENST00000289703		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000336233	ENST00000468523		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-3UTR	ENST00000456827	ENST00000357992		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000456827	ENST00000289703		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-intron	ENST00000456827	ENST00000468523		ChiTaRS3.1			AW370429	LIPA	chr10	90973826	-	ELK4	chr1	205583571	+
intron-3UTR	ENST00000228515	ENST00000228515		ChiTaRS3.1			AA640429	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-intron	ENST00000228515	ENST00000550461		ChiTaRS3.1			AA640429	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-3UTR	ENST00000550461	ENST00000228515		ChiTaRS3.1			AA640429	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-intron	ENST00000550461	ENST00000550461		ChiTaRS3.1			AA640429	CSRNP2	chr12	51455561	-	CSRNP2	chr12	51455469	+
intron-3CDS	ENST00000252996	ENST00000252996		ChiTaRS3.1			BE074659	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000252996	ENST00000609045		ChiTaRS3.1			BE074659	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-3CDS	ENST00000609045	ENST00000252996		ChiTaRS3.1			BE074659	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000609045	ENST00000609045		ChiTaRS3.1			BE074659	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
In-frame	ENST00000300093	ENST00000300093		ChiTaRS3.1			BI033419	PLK1	chr16	23695200	-	PLK1	chr16	23700558	+
5CDS-intron	ENST00000300093	ENST00000564202		ChiTaRS3.1			BI033419	PLK1	chr16	23695200	-	PLK1	chr16	23700558	+
intron-3CDS	ENST00000564202	ENST00000300093		ChiTaRS3.1			BI033419	PLK1	chr16	23695200	-	PLK1	chr16	23700558	+
intron-intron	ENST00000564202	ENST00000564202		ChiTaRS3.1			BI033419	PLK1	chr16	23695200	-	PLK1	chr16	23700558	+
intron-3CDS	ENST00000549190	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000549190	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000549190	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395580	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000395580	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000337898	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000337898	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000358314	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000358314	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000395568	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000395568	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000256678	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000256678	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000449194	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000449194	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000552761	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000552761	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000317560	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000317560	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000432191	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000432191	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000549190		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000395580		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000337898		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000358314		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000395568		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000256678		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000449194		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000552761		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000317560		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-3CDS	ENST00000550535	ENST00000432191		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000550535	ENST00000550535		ChiTaRS3.1			CA418369	PPHLN1	chr12	42835115	-	PPHLN1	chr12	42781269	+
intron-intron	ENST00000453546	ENST00000453546		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000453546	ENST00000374852		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000453546	ENST00000478487		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000453546		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000374852		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000374852	ENST00000478487		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000453546		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000374852		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-intron	ENST00000478487	ENST00000478487		ChiTaRS3.1			CA944429	MTMR8	chrX	63481787	+	MTMR8	chrX	63482141	-
intron-3CDS	ENST00000367846	ENST00000367846		ChiTaRS3.1			CA311389	MPC2	chr1	167887448	+	MPC2	chr1	167889250	-
intron-3CDS	ENST00000367846	ENST00000271373		ChiTaRS3.1			CA311389	MPC2	chr1	167887448	+	MPC2	chr1	167889250	-
intron-3CDS	ENST00000271373	ENST00000367846		ChiTaRS3.1			CA311389	MPC2	chr1	167887448	+	MPC2	chr1	167889250	-
intron-3CDS	ENST00000271373	ENST00000271373		ChiTaRS3.1			CA311389	MPC2	chr1	167887448	+	MPC2	chr1	167889250	-
In-frame	ENST00000315717	ENST00000315717		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
Frame-shit	ENST00000315717	ENST00000295685		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
5CDS-3UTR	ENST00000315717	ENST00000477992		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
In-frame	ENST00000295685	ENST00000315717		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
Frame-shit	ENST00000295685	ENST00000295685		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
5CDS-3UTR	ENST00000295685	ENST00000477992		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
3UTR-3CDS	ENST00000477992	ENST00000315717		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
3UTR-3CDS	ENST00000477992	ENST00000295685		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
3UTR-3UTR	ENST00000477992	ENST00000477992		ChiTaRS3.1			CB321859	ARPC2	chr2	219114564	-	ARPC2	chr2	219118619	+
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			BE501999	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-intron	ENST00000264158	ENST00000264158		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000264158	ENST00000539493		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000264158	ENST00000442034		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000264158	ENST00000487003		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000264158	ENST00000425393		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000539493	ENST00000264158		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000539493	ENST00000539493		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000539493	ENST00000442034		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000539493	ENST00000487003		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000539493	ENST00000425393		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000442034	ENST00000264158		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000442034	ENST00000539493		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000442034	ENST00000442034		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000442034	ENST00000487003		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000442034	ENST00000425393		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000487003	ENST00000264158		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000487003	ENST00000539493		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000487003	ENST00000442034		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000487003	ENST00000487003		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000487003	ENST00000425393		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000425393	ENST00000264158		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000425393	ENST00000539493		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000425393	ENST00000442034		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000425393	ENST00000487003		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-intron	ENST00000425393	ENST00000425393		ChiTaRS3.1			BF358939	RAB3GAP1	chr2	135838250	-	RAB3GAP1	chr2	135845628	-
intron-3UTR	ENST00000367990	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3UTR	ENST00000468465	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3UTR	ENST00000463812	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3UTR	ENST00000470459	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3UTR	ENST00000464492	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3UTR	ENST00000491350	ENST00000361505		ChiTaRS3.1			AI064779	APOA2	chr1	161193418	+	PNP	chr14	20944930	+
intron-3CDS	ENST00000372188	ENST00000372188		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
intron-3CDS	ENST00000372188	ENST00000372187		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
intron-3CDS	ENST00000372188	ENST00000372185		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
intron-3CDS	ENST00000372188	ENST00000372181		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372187	ENST00000372188		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372187	ENST00000372187		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372187	ENST00000372185		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372187	ENST00000372181		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372185	ENST00000372188		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372185	ENST00000372187		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372185	ENST00000372185		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372185	ENST00000372181		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372181	ENST00000372188		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372181	ENST00000372187		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372181	ENST00000372185		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
3UTR-3CDS	ENST00000372181	ENST00000372181		ChiTaRS3.1			BE938239	FAM213A	chr10	82192068	+	FAM213A	chr10	82180371	+
intron-intron	ENST00000397817	ENST00000354989		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000360031		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000376652		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000433259		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000397817	ENST00000485936		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000354989		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000360031		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000376652		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000433259		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000219431	ENST00000485936		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000354989		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000360031		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000376652		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000433259		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000475280	ENST00000485936		ChiTaRS3.1			EL584399	MPG	chr16	135232	-	ENTPD6	chr20	25187698	-
intron-intron	ENST00000400098	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400098	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400100	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000400097	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000553597	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000390687	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000346403	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000554227	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000577565	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000400098		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000400100		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000400097		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000553597		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000390687		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000346403		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000554227		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000577565		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-intron	ENST00000444203	ENST00000444203		ChiTaRS3.1			DA881059	SNRPN	chr15	25583652	-	SNRPN	chr15	25616807	-
intron-3CDS	ENST00000216181	ENST00000206451		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000216181	ENST00000559123		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000216181	ENST00000382708		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000216181	ENST00000561435		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3UTR	ENST00000216181	ENST00000470718		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3CDS	ENST00000475726	ENST00000206451		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000475726	ENST00000559123		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000475726	ENST00000382708		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000475726	ENST00000561435		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3UTR	ENST00000475726	ENST00000470718		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3CDS	ENST00000401701	ENST00000206451		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000401701	ENST00000559123		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000401701	ENST00000382708		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-5UTR	ENST00000401701	ENST00000561435		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3UTR	ENST00000401701	ENST00000470718		ChiTaRS3.1			BG979539	MYH9	chr22	36682855	+	PSME1	chr14	24606585	-
intron-3CDS	ENST00000389532	ENST00000301761		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000389532	ENST00000542074		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000389532	ENST00000537782		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000389532	ENST00000543265		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-intron	ENST00000389532	ENST00000534878		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000312405	ENST00000301761		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000312405	ENST00000542074		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000312405	ENST00000537782		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000312405	ENST00000543265		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-intron	ENST00000312405	ENST00000534878		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000483991	ENST00000301761		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000483991	ENST00000542074		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000483991	ENST00000537782		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000483991	ENST00000543265		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-intron	ENST00000483991	ENST00000534878		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000409386	ENST00000301761		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3CDS	ENST00000409386	ENST00000542074		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000409386	ENST00000537782		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-3UTR	ENST00000409386	ENST00000543265		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-intron	ENST00000409386	ENST00000534878		ChiTaRS3.1			T04949	CAMSAP1	chr9	138755901	-	SDHAF2	chr11	61213433	+
intron-intron	ENST00000258538	ENST00000414350		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000258538	ENST00000343632		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000258538	ENST00000381756		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000258538	ENST00000405147		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000258538	ENST00000325180		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000258538	ENST00000337437		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000258538	ENST00000406772		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000258538	ENST00000488672		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000549713	ENST00000414350		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000549713	ENST00000343632		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000549713	ENST00000381756		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000549713	ENST00000405147		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000549713	ENST00000325180		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000549713	ENST00000337437		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-3UTR	ENST00000549713	ENST00000406772		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000549713	ENST00000488672		ChiTaRS3.1			BG169689	SLC41A2	chr12	105198121	-	GGA1	chr22	38029514	+
intron-intron	ENST00000464451	ENST00000464451		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
intron-3UTR	ENST00000464451	ENST00000243253		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
intron-3UTR	ENST00000464451	ENST00000424880		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
intron-3UTR	ENST00000464451	ENST00000483956		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-intron	ENST00000243253	ENST00000464451		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000243253	ENST00000243253		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000243253	ENST00000424880		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000243253	ENST00000483956		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-intron	ENST00000424880	ENST00000464451		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000424880	ENST00000243253		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000424880	ENST00000424880		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000424880	ENST00000483956		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-intron	ENST00000483956	ENST00000464451		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000483956	ENST00000243253		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000483956	ENST00000424880		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
3UTR-3UTR	ENST00000483956	ENST00000483956		ChiTaRS3.1			AW939919	SEC61A1	chr3	127789152	+	SEC61A1	chr3	127789271	-
intron-3UTR	ENST00000384994	ENST00000345136		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000357649		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000354589		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000398774		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000322810		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000354958		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000356346		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-3UTR	ENST00000384994	ENST00000436759		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-intron	ENST00000384994	ENST00000527096		ChiTaRS3.1			BF739409	NEAT1	chr11	65195590	-	PLEC	chr8	144989451	+
intron-intron	ENST00000394332	ENST00000297347		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000394332	ENST00000522839		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000394333	ENST00000297347		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000394333	ENST00000522839		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000479035	ENST00000297347		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000479035	ENST00000522839		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000245857	ENST00000297347		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000245857	ENST00000522839		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000577407	ENST00000297347		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-intron	ENST00000577407	ENST00000522839		ChiTaRS3.1			BY999398	RPL23	chr17	37006358	-	MED30	chr8	118545351	+
intron-3CDS	ENST00000458501	ENST00000458501		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000458501	ENST00000379644		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000297798		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000458501	ENST00000521576		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000458501		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000379644	ENST00000379644		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000297798		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000379644	ENST00000521576		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000458501		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000297798	ENST00000379644		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000297798		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000297798	ENST00000521576		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000458501		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3CDS	ENST00000521576	ENST00000379644		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000297798		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-intron	ENST00000521576	ENST00000521576		ChiTaRS3.1			CN256929	HGSNAT	chr8	43002540	-	HGSNAT	chr8	42995695	+
intron-3UTR	ENST00000563679	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000563679	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000325823	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000325823	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000447912	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000447912	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000535621	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000535621	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000455313	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000455313	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000396410	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000396410	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000569715	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000569715	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3UTR	ENST00000450288	ENST00000530758		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-intron	ENST00000450288	ENST00000256463		ChiTaRS3.1			AF281279	PDXDC1	chr16	15078195	+	BRK1	chr3	10168601	-
intron-3CDS	ENST00000536985	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000536985	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000536985	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000536985	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000379789	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379789	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379789	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379789	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000540253	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000540253	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000540253	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000540253	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000317350	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000317350	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000317350	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000317350	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000379785	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379785	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379785	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379785	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000379782	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379782	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379782	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379782	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000360521	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000360521	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000360521	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000360521	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-3CDS	ENST00000379775	ENST00000415229		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379775	ENST00000535727		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379775	ENST00000301776		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
intron-intron	ENST00000379775	ENST00000528206		ChiTaRS3.1			AK025969	PFKFB3	chr10	6262523	+	ASRGL1	chr11	62123796	+
5CDS-5UTR	ENST00000408888	ENST00000488594		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000408888	ENST00000358966		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000408888	ENST00000282841		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-intron	ENST00000408888	ENST00000391855		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-intron	ENST00000408888	ENST00000489692		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000408888	ENST00000476121		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000366606	ENST00000488594		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000366606	ENST00000358966		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000366606	ENST00000282841		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-intron	ENST00000366606	ENST00000391855		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-intron	ENST00000366606	ENST00000489692		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-5UTR	ENST00000366606	ENST00000476121		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-5UTR	ENST00000495224	ENST00000488594		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-5UTR	ENST00000495224	ENST00000358966		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-5UTR	ENST00000495224	ENST00000282841		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-intron	ENST00000495224	ENST00000391855		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-intron	ENST00000495224	ENST00000489692		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
intron-5UTR	ENST00000495224	ENST00000476121		ChiTaRS3.1			DB026779	RBM34	chr1	235324208	-	GGPS1	chr1	235498557	+
5CDS-intron	ENST00000383777	ENST00000383777		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5CDS-intron	ENST00000383777	ENST00000399451		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5CDS-intron	ENST00000383777	ENST00000497037		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5CDS-intron	ENST00000399451	ENST00000383777		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5CDS-intron	ENST00000399451	ENST00000399451		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5CDS-intron	ENST00000399451	ENST00000497037		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5UTR-intron	ENST00000497037	ENST00000383777		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5UTR-intron	ENST00000497037	ENST00000399451		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
5UTR-intron	ENST00000497037	ENST00000497037		ChiTaRS3.1			BE831069	ANKRD28	chr3	15726735	-	ANKRD28	chr3	15718987	+
intron-3CDS	ENST00000530124	ENST00000602795		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000530124	ENST00000344018		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-intron	ENST00000530124	ENST00000479207		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000257247	ENST00000602795		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000257247	ENST00000344018		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-intron	ENST00000257247	ENST00000479207		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000525875	ENST00000602795		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000525875	ENST00000344018		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-intron	ENST00000525875	ENST00000479207		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000378024	ENST00000602795		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000378024	ENST00000344018		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-intron	ENST00000378024	ENST00000479207		ChiTaRS3.1			BE934459	AHNAK	chr11	62288954	-	NELFCD	chr20	57561874	+
intron-3CDS	ENST00000421699	ENST00000269373		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000421699	ENST00000535965		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000609374	ENST00000269373		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000609374	ENST00000535965		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000490628	ENST00000269373		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
intron-3CDS	ENST00000490628	ENST00000535965		ChiTaRS3.1			BI028999	GOLGA2	chr9	131022439	+	FN3KRP	chr17	80684703	+
3UTR-3UTR	ENST00000367302	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367302	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367302	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367302	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367302	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367302	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367296	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367296	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367296	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367296	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367296	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367296	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000295624	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000295624	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000295624	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000295624	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000295624	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000295624	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367297	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367297	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367297	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367297	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367297	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367297	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367300	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367300	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367300	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367300	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367300	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367300	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367295	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367295	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-3UTR	ENST00000367295	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367295	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367295	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
3UTR-intron	ENST00000367295	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-3UTR	ENST00000469130	ENST00000282120		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-3UTR	ENST00000469130	ENST00000377386		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-3UTR	ENST00000469130	ENST00000398263		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-intron	ENST00000469130	ENST00000409232		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-intron	ENST00000469130	ENST00000409015		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-intron	ENST00000469130	ENST00000444342		ChiTaRS3.1			AW366559	NAV1	chr1	201789131	+	TGOLN2	chr2	85545606	+
intron-intron	ENST00000315872	ENST00000424120		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000413206		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000503292		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000389652		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000438599		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000511544		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000513811		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000507954		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000515124		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000315872	ENST00000503658		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000424120		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000413206		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000503292		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000389652		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000438599		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000511544		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000513811		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000507954		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000515124		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000462366	ENST00000503658		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000424120		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000413206		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000503292		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000389652		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000438599		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000511544		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000513811		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000507954		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000515124		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-intron	ENST00000401753	ENST00000503658		ChiTaRS3.1			DA225869	ROCK2	chr2	11322028	-	CC2D2A	chr4	15547493	-
intron-3CDS	ENST00000403729	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000403729	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000403729	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000403729	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000403729	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000403729	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-3CDS	ENST00000482406	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000482406	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000482406	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000482406	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000482406	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000482406	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-3CDS	ENST00000404191	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000404191	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000404191	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000404191	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000404191	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000404191	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-3CDS	ENST00000346652	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000346652	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000346652	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000346652	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000346652	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000346652	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-3CDS	ENST00000307333	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000307333	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000307333	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000307333	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000307333	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000307333	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-3CDS	ENST00000295465	ENST00000403729		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000295465	ENST00000482406		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-5UTR	ENST00000295465	ENST00000404191		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000295465	ENST00000346652		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000295465	ENST00000307333		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000295465	ENST00000295465		ChiTaRS3.1			CN315409	ANTXR2	chr4	80898796	-	ANTXR2	chr4	80828590	+
intron-intron	ENST00000288398	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000288398	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000288398	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000358278	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000358278	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000358278	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560445	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560445	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560445	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000403994	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000403994	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000403994	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000357980	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000357980	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000357980	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559556	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559556	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559556	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559397	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559397	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559397	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000267996	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000267996	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000267996	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000334895	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000334895	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000334895	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000404484	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000404484	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000404484	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560959	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560959	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000560959	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559281	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559281	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000559281	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000317516	ENST00000403197		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000317516	ENST00000377205		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000317516	ENST00000492735		ChiTaRS3.1			BQ372419	TPM1	chr15	63348595	-	NMNAT1	chr1	10009075	-
intron-intron	ENST00000323997	ENST00000544301		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000323997	ENST00000224237		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000323997	ENST00000485947		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000519584	ENST00000544301		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000519584	ENST00000224237		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000519584	ENST00000485947		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000518175	ENST00000544301		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000518175	ENST00000224237		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
intron-intron	ENST00000518175	ENST00000485947		ChiTaRS3.1			CV314769	ENO3	chr17	4857622	+	VIM	chr10	17277580	+
Frame-shit	ENST00000007708	ENST00000007708		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
Frame-shit	ENST00000007708	ENST00000503176		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
5CDS-intron	ENST00000007708	ENST00000511026		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
Frame-shit	ENST00000503176	ENST00000007708		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
Frame-shit	ENST00000503176	ENST00000503176		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
5CDS-intron	ENST00000503176	ENST00000511026		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
intron-3CDS	ENST00000511026	ENST00000007708		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
intron-3CDS	ENST00000511026	ENST00000503176		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
intron-intron	ENST00000511026	ENST00000511026		ChiTaRS3.1			BE504969	PDK2	chr17	48183355	-	PDK2	chr17	48183275	+
intron-3UTR	ENST00000296306	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000296306	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000296306	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000296306	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000296306	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000296306	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000296306	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000296306	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000296306	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000310340	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000310340	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000310340	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000310340	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000310340	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000310340	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000310340	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000310340	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000310340	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000453061	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000453061	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000453061	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000453061	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000453061	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000453061	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000453061	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000453061	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000453061	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000504346	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000504346	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000504346	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000504346	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000504346	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000504346	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000504346	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000504346	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000504346	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000383028	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000383028	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000383028	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000383028	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000383028	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000383028	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000383028	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000383028	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000383028	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000536264	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000536264	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000536264	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000536264	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000536264	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000536264	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000536264	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000536264	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000536264	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000502311	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000502311	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000502311	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000502311	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000502311	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000502311	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000502311	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000502311	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000502311	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000503111	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000503111	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000503111	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000503111	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000503111	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000503111	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000503111	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000503111	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000503111	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000509768	ENST00000296306		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000509768	ENST00000310340		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000509768	ENST00000453061		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000509768	ENST00000504346		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-3UTR	ENST00000509768	ENST00000383028		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000509768	ENST00000536264		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000509768	ENST00000502311		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000509768	ENST00000503111		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000509768	ENST00000509768		ChiTaRS3.1			T92289	PIGG	chr4	520825	-	PIGG	chr4	520859	+
intron-intron	ENST00000584348	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000584348	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000571335	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000436810	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000542886	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000457293	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000270570	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000575023	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000584348		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000571335		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000436810		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000542886		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000457293		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000270570		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000575023		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000395585	ENST00000395585		ChiTaRS3.1			AI990699	SLC47A1	chr17	19439501	-	SLC47A1	chr17	19445190	-
intron-intron	ENST00000294507	ENST00000227155		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000294507	ENST00000342935		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000294507	ENST00000530931		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000476492	ENST00000227155		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000476492	ENST00000342935		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000476492	ENST00000530931		ChiTaRS3.1			BI024399	LAPTM5	chr1	31221182	-	CD82	chr11	44597472	+
intron-intron	ENST00000409509	ENST00000563675		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000541464		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000381414		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000396229		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000542583		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000219821		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000561503		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409509	ENST00000564959		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000563675		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000541464		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000381414		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000396229		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000542583		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000219821		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000561503		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000409037	ENST00000564959		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000563675		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000541464		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000381414		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000396229		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000542583		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000219821		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000561503		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000393992	ENST00000564959		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000563675		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000541464		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000381414		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000396229		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000542583		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000219821		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000561503		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000341546	ENST00000564959		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000563675		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000541464		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000381414		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000396229		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000542583		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000219821		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000561503		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-intron	ENST00000462169	ENST00000564959		ChiTaRS3.1			BF372779	LRRC29	chr16	67259805	-	TMC5	chr16	19490317	+
intron-5UTR	ENST00000484910	ENST00000484910		ChiTaRS3.1			H93739	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-3UTR	ENST00000484910	ENST00000367002		ChiTaRS3.1			H93739	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-5UTR	ENST00000367002	ENST00000484910		ChiTaRS3.1			H93739	RD3	chr1	211650404	+	RD3	chr1	211649943	-
intron-3UTR	ENST00000367002	ENST00000367002		ChiTaRS3.1			H93739	RD3	chr1	211650404	+	RD3	chr1	211649943	-
3UTR-intron	ENST00000370187	ENST00000557515		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000338631		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000357481		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000605057		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000457657		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000262710		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000397341		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000555053		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000370187	ENST00000555352		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000557515		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000338631		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000357481		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000605057		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000457657		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000262710		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000397341		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000555053		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000393441	ENST00000555352		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000557515		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000338631		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000357481		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000605057		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000457657		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000262710		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000397341		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000555053		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000408038	ENST00000555352		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000557515		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000338631		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000357481		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000605057		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000457657		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000262710		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000397341		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000555053		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
intron-intron	ENST00000493877	ENST00000555352		ChiTaRS3.1			BE819409	BTRC	chr10	103313525	+	ACIN1	chr14	23548192	+
3UTR-intron	ENST00000449969	ENST00000037243		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
3UTR-intron	ENST00000449969	ENST00000565057		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
3UTR-intron	ENST00000449969	ENST00000563744		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
3UTR-intron	ENST00000449969	ENST00000568455		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
3UTR-intron	ENST00000449969	ENST00000565985		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-intron	ENST00000288766	ENST00000037243		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-intron	ENST00000288766	ENST00000565057		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-intron	ENST00000288766	ENST00000563744		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-intron	ENST00000288766	ENST00000568455		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-intron	ENST00000288766	ENST00000565985		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378488	ENST00000037243		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378488	ENST00000565057		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378488	ENST00000563744		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378488	ENST00000568455		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378488	ENST00000565985		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000419816	ENST00000037243		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000419816	ENST00000565057		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000419816	ENST00000563744		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000419816	ENST00000568455		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000419816	ENST00000565985		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378486	ENST00000037243		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378486	ENST00000565057		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378486	ENST00000563744		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378486	ENST00000568455		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
5CDS-intron	ENST00000378486	ENST00000565985		ChiTaRS3.1			BM702739	PLCH2	chr1	2436013	+	GABARAPL2	chr16	75606569	-
intron-3CDS	ENST00000451127	ENST00000409794		ChiTaRS3.1			BU687679	TEX22	chr14	105867128	-	PLEKHG2	chr19	39914693	-
intron-intron	ENST00000451127	ENST00000378550		ChiTaRS3.1			BU687679	TEX22	chr14	105867128	-	PLEKHG2	chr19	39914693	-
intron-intron	ENST00000451127	ENST00000425673		ChiTaRS3.1			BU687679	TEX22	chr14	105867128	-	PLEKHG2	chr19	39914693	-
intron-intron	ENST00000451127	ENST00000458508		ChiTaRS3.1			BU687679	TEX22	chr14	105867128	-	PLEKHG2	chr19	39914693	-
intron-intron	ENST00000451127	ENST00000409797		ChiTaRS3.1			BU687679	TEX22	chr14	105867128	-	PLEKHG2	chr19	39914693	-
Frame-shit	ENST00000379378	ENST00000338970		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
Frame-shit	ENST00000379378	ENST00000396203		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
5CDS-3UTR	ENST00000379378	ENST00000416518		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
5CDS-intron	ENST00000379378	ENST00000461368		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
intron-3CDS	ENST00000564718	ENST00000338970		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
intron-3CDS	ENST00000564718	ENST00000396203		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
intron-3UTR	ENST00000564718	ENST00000416518		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
intron-intron	ENST00000564718	ENST00000461368		ChiTaRS3.1			BC010079	E2F4	chr16	67229791	+	RPL14	chr3	40503542	+
intron-5UTR	ENST00000448662	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000431808	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000284776	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000437304	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000319471	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000449407	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000355634	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000393528	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000418609	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
intron-5UTR	ENST00000498125	ENST00000348956		ChiTaRS3.1			BQ060799	SORBS2	chr4	186510383	+	CKB	chr14	103988844	-
Frame-shit	ENST00000393078	ENST00000393078		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393078	ENST00000485588		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393078	ENST00000393080		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393078	ENST00000467132		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393078	ENST00000482740		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-3CDS	ENST00000485588	ENST00000393078		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000485588	ENST00000485588		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000485588	ENST00000393080		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000485588	ENST00000467132		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000485588	ENST00000482740		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
Frame-shit	ENST00000393080	ENST00000393078		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393080	ENST00000485588		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393080	ENST00000393080		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393080	ENST00000467132		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000393080	ENST00000482740		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
Frame-shit	ENST00000467132	ENST00000393078		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000467132	ENST00000485588		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000467132	ENST00000393080		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000467132	ENST00000467132		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000467132	ENST00000482740		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-3CDS	ENST00000482740	ENST00000393078		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000482740	ENST00000485588		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000482740	ENST00000393080		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000482740	ENST00000467132		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
intron-intron	ENST00000482740	ENST00000482740		ChiTaRS3.1			BF924119	SERPINA3	chr14	95081225	-	SERPINA3	chr14	95088754	-
5CDS-intron	ENST00000306735	ENST00000306735		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000586847		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000262197		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000306735		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000586847		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000262197		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000306735		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000586847		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000262197		ChiTaRS3.1			BE669569	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-5UTR	ENST00000318407	ENST00000438552		ChiTaRS3.1			CB157749	BOK	chr2	242513231	-	SNRPB	chr20	2451415	-
3UTR-5UTR	ENST00000318407	ENST00000381342		ChiTaRS3.1			CB157749	BOK	chr2	242513231	-	SNRPB	chr20	2451415	-
3UTR-5UTR	ENST00000318407	ENST00000339610		ChiTaRS3.1			CB157749	BOK	chr2	242513231	-	SNRPB	chr20	2451415	-
intron-intron	ENST00000441310	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000421182		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000357867		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000323926		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000336916		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000354785		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000357009		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000346544		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000345488		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000359671		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000446046		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000443816		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000432072		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000356005		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000490833		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000426059		ChiTaRS3.1			BX095959	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807819	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000401783	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000374469	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000467821	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000302728	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000374461	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000297826	ENST00000418539		ChiTaRS3.1			BF995969	SVEP1	chr9	113170903	-	BCYRN1	chrX	70837580	+
intron-intron	ENST00000341223	ENST00000458381		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000444448		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000317647		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000445023		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397206		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000421711		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397209		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000458381		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000444448		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000317647		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000445023		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397206		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000421711		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397209		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000458381		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000444448		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000317647		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000445023		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397206		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000421711		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397209		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000458381		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000444448		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000317647		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000445023		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397206		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000421711		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397209		ChiTaRS3.1			R11359	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF364859	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
5CDS-intron	ENST00000264451	ENST00000394331		ChiTaRS3.1			BF802799	SLC30A9	chr4	42072675	+	HOXC6	chr12	54414157	-
5CDS-intron	ENST00000264451	ENST00000243108		ChiTaRS3.1			BF802799	SLC30A9	chr4	42072675	+	HOXC6	chr12	54414157	-
5CDS-3UTR	ENST00000372324	ENST00000372324		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000372324	ENST00000434555		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000372324	ENST00000356836		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000372324	ENST00000309519		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000372324	ENST00000481924		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000434555	ENST00000372324		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000434555	ENST00000434555		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000434555	ENST00000356836		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000434555	ENST00000309519		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000434555	ENST00000481924		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000356836	ENST00000372324		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000356836	ENST00000434555		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000356836	ENST00000356836		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000356836	ENST00000309519		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000356836	ENST00000481924		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000309519	ENST00000372324		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000309519	ENST00000434555		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-3UTR	ENST00000309519	ENST00000356836		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000309519	ENST00000309519		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
5CDS-intron	ENST00000309519	ENST00000481924		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
3UTR-3UTR	ENST00000481924	ENST00000372324		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
3UTR-3UTR	ENST00000481924	ENST00000434555		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
3UTR-3UTR	ENST00000481924	ENST00000356836		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
3UTR-intron	ENST00000481924	ENST00000309519		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
3UTR-intron	ENST00000481924	ENST00000481924		ChiTaRS3.1			CA337099	B4GALT2	chr1	44451263	-	B4GALT2	chr1	44456659	+
intron-intron	ENST00000472531	ENST00000341056		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396045		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000310758		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396040		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000442504		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000448602		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000479447		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000341056		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396045		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000310758		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396040		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000442504		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000448602		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000479447		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000341056		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396045		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000310758		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396040		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000442504		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000448602		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000479447		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000341056		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396045		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000310758		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396040		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000442504		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000448602		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000479447		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000341056		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396045		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000310758		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396040		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000442504		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000448602		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000479447		ChiTaRS3.1			AW978089	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
Frame-shit	ENST00000596304	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000430157	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000596273	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000442744	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000595683	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000595158	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000598780	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000599551	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000597451	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
Frame-shit	ENST00000599595	ENST00000390237		ChiTaRS3.1			BG878329	UBA52	chr19	18685720	-	IGKC	chr2	89157002	-
3UTR-intron	ENST00000328735	ENST00000304685		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000328735	ENST00000536277		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000328735	ENST00000360851		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000328735	ENST00000539189		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000330333	ENST00000304685		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000330333	ENST00000536277		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000330333	ENST00000360851		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000330333	ENST00000539189		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000347667	ENST00000304685		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000347667	ENST00000536277		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000347667	ENST00000360851		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000347667	ENST00000539189		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000466122	ENST00000304685		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000466122	ENST00000536277		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000466122	ENST00000360851		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
3UTR-intron	ENST00000466122	ENST00000539189		ChiTaRS3.1			AW993289	BACE2	chr21	42647879	-	RGL1	chr1	183786439	-
intron-intron	ENST00000268164	ENST00000268164		ChiTaRS3.1			AA668689	ST8SIA2	chr15	92960915	+	ST8SIA2	chr15	92964583	-
intron-intron	ENST00000268164	ENST00000539113		ChiTaRS3.1			AA668689	ST8SIA2	chr15	92960915	+	ST8SIA2	chr15	92964583	-
intron-intron	ENST00000539113	ENST00000268164		ChiTaRS3.1			AA668689	ST8SIA2	chr15	92960915	+	ST8SIA2	chr15	92964583	-
intron-intron	ENST00000539113	ENST00000539113		ChiTaRS3.1			AA668689	ST8SIA2	chr15	92960915	+	ST8SIA2	chr15	92964583	-
In-frame	ENST00000240185	ENST00000438796		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000240185	ENST00000414675		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000240185	ENST00000441090		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000240185	ENST00000334859		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000240185	ENST00000425562		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000240185	ENST00000493726		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-5UTR	ENST00000240185	ENST00000536618		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-3CDS	ENST00000439080	ENST00000438796		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-intron	ENST00000439080	ENST00000414675		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-intron	ENST00000439080	ENST00000441090		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-intron	ENST00000439080	ENST00000334859		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-intron	ENST00000439080	ENST00000425562		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-intron	ENST00000439080	ENST00000493726		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5UTR-5UTR	ENST00000439080	ENST00000536618		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
In-frame	ENST00000315091	ENST00000438796		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000315091	ENST00000414675		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000315091	ENST00000441090		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000315091	ENST00000334859		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000315091	ENST00000425562		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-intron	ENST00000315091	ENST00000493726		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
5CDS-5UTR	ENST00000315091	ENST00000536618		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-3CDS	ENST00000480464	ENST00000438796		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000480464	ENST00000414675		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000480464	ENST00000441090		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000480464	ENST00000334859		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000480464	ENST00000425562		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000480464	ENST00000493726		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-5UTR	ENST00000480464	ENST00000536618		ChiTaRS3.1			DA652289	TARDBP	chr1	11073830	+	LRCH3	chr3	197562617	+
intron-intron	ENST00000374706	ENST00000374706		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000265375		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000339497		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000374704		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374706	ENST00000492478		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000374706		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000265375		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000339497		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000374704		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000265375	ENST00000492478		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000374706		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000265375		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000339497		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000374704		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000339497	ENST00000492478		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000374706		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000265375		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000339497		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000374704		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000374704	ENST00000492478		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000374706		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000265375		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000339497		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000374704		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000492478	ENST00000492478		ChiTaRS3.1			BF870559	CCNY	chr10	35734402	-	CCNY	chr10	35734196	+
intron-intron	ENST00000508803	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000508803	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382892	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382891	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
3UTR-intron	ENST00000382895	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000482415	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000382888	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000514045	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000436793	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000420906	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000503128	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000539406		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000222792		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000435288		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000495789		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000539389		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000546235		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000409041		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000424025		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000439711		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000421775		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000398261	ENST00000410098		ChiTaRS3.1			AW935679	WHSC1	chr4	1982890	+	CHN2	chr7	29249708	+
intron-intron	ENST00000340666	ENST00000261799		ChiTaRS3.1			BF824769	SYN1	chrX	47442882	+	PDGFRB	chr5	149505981	-
intron-intron	ENST00000340666	ENST00000523456		ChiTaRS3.1			BF824769	SYN1	chrX	47442882	+	PDGFRB	chr5	149505981	-
intron-intron	ENST00000295987	ENST00000261799		ChiTaRS3.1			BF824769	SYN1	chrX	47442882	+	PDGFRB	chr5	149505981	-
intron-intron	ENST00000295987	ENST00000523456		ChiTaRS3.1			BF824769	SYN1	chrX	47442882	+	PDGFRB	chr5	149505981	-
intron-3UTR	ENST00000608933	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000608933	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-3UTR	ENST00000295908	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000295908	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-3UTR	ENST00000508256	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000508256	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-3UTR	ENST00000506423	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000506423	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-3UTR	ENST00000315194	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000315194	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-3UTR	ENST00000514204	ENST00000340855		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000537071		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000541269		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000422081		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000370441		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000490775		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000370443		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000427113		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
intron-intron	ENST00000514204	ENST00000428056		ChiTaRS3.1			AA984459	PPM1K	chr4	89205095	-	IDS	chrX	148561611	-
In-frame	ENST00000447866	ENST00000415930		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
In-frame	ENST00000447866	ENST00000356487		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
In-frame	ENST00000447866	ENST00000586425		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000368356	ENST00000415930		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000368356	ENST00000356487		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000368356	ENST00000586425		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
intron-3CDS	ENST00000487002	ENST00000415930		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
intron-3CDS	ENST00000487002	ENST00000356487		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
intron-3CDS	ENST00000487002	ENST00000586425		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000356657	ENST00000415930		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000356657	ENST00000356487		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
Frame-shit	ENST00000356657	ENST00000586425		ChiTaRS3.1			CB046419	FDPS	chr1	155290342	-	GPI	chr19	34870455	-
intron-3UTR	ENST00000355451	ENST00000355451		ChiTaRS3.1			AA429879	NUDCD3	chr7	44423816	-	NUDCD3	chr7	44424233	-
intron-5UTR	ENST00000355451	ENST00000460110		ChiTaRS3.1			AA429879	NUDCD3	chr7	44423816	-	NUDCD3	chr7	44424233	-
intron-3UTR	ENST00000460110	ENST00000355451		ChiTaRS3.1			AA429879	NUDCD3	chr7	44423816	-	NUDCD3	chr7	44424233	-
intron-5UTR	ENST00000460110	ENST00000460110		ChiTaRS3.1			AA429879	NUDCD3	chr7	44423816	-	NUDCD3	chr7	44424233	-
intron-3CDS	ENST00000474596	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000474596	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000474596	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000474596	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000398405	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398405	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398405	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398405	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000433957	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000433957	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000433957	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000433957	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000291532	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000291532	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000291532	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000291532	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000380399	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000380399	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000380399	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000380399	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000398397	ENST00000285039		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398397	ENST00000324581		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398397	ENST00000592688		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-intron	ENST00000398397	ENST00000587895		ChiTaRS3.1			BG874549	TMPRSS3	chr21	43800239	-	MYO5B	chr18	47500772	+
intron-3CDS	ENST00000509081	ENST00000231368		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000509081	ENST00000395770		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-intron	ENST00000509081	ENST00000395784		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000264400	ENST00000231368		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000264400	ENST00000395770		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-intron	ENST00000264400	ENST00000395784		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000335927	ENST00000231368		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000335927	ENST00000395770		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-intron	ENST00000335927	ENST00000395784		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000436139	ENST00000231368		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000436139	ENST00000395770		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-intron	ENST00000436139	ENST00000395784		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000514889	ENST00000231368		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3CDS	ENST00000514889	ENST00000395770		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-intron	ENST00000514889	ENST00000395784		ChiTaRS3.1			BI909609	RASGEF1B	chr4	82392035	+	LNPEP	chr5	96363436	+
intron-3UTR	ENST00000475548	ENST00000395338		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000458307		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000475548	ENST00000476226		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000538581		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000475548	ENST00000273588		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000475548	ENST00000546031		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000395338		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000458307		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000358743	ENST00000476226		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000538581		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000358743	ENST00000273588		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000358743	ENST00000546031		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000395338		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000458307		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000347557	ENST00000476226		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000538581		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000347557	ENST00000273588		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000347557	ENST00000546031		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000395338		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000458307		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000333137	ENST00000476226		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000538581		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000333137	ENST00000273588		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000333137	ENST00000546031		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000395338		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000458307		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-5UTR	ENST00000404574	ENST00000476226		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000538581		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-3UTR	ENST00000404574	ENST00000273588		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000404574	ENST00000546031		ChiTaRS3.1			AK092939	SMTN	chr22	31500736	+	AMT	chr3	49454385	-
intron-intron	ENST00000294053	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000294053	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000294053	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000538039	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000538039	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000538039	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000437826	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000437826	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000437826	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000340729	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000340729	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000340729	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000543042	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000543042	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000543042	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000445069	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000445069	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000445069	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000538021	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000538021	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000538021	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-intron	ENST00000542555	ENST00000438189		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000542555	ENST00000542025		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
intron-3UTR	ENST00000542555	ENST00000325656		ChiTaRS3.1			BX954309	CLPB	chr11	72003817	+	CABP4	chr11	67223119	+
5CDS-5UTR	ENST00000382031	ENST00000341761		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000382031	ENST00000374193		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000382031	ENST00000461942		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000382031	ENST00000374195		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000399453	ENST00000341761		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000399453	ENST00000374193		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000399453	ENST00000461942		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000399453	ENST00000374195		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000300231	ENST00000341761		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000300231	ENST00000374193		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000300231	ENST00000461942		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
5CDS-5UTR	ENST00000300231	ENST00000374195		ChiTaRS3.1			BC019869	MAP1A	chr15	43814299	+	WDR31	chr9	116098608	-
intron-3UTR	ENST00000319359	ENST00000292616		ChiTaRS3.1			BG255749	ELL3	chr15	44087284	+	LRWD1	chr7	102113562	+
intron-3UTR	ENST00000497465	ENST00000292616		ChiTaRS3.1			BG255749	ELL3	chr15	44087284	+	LRWD1	chr7	102113562	+
intron-3UTR	ENST00000328252	ENST00000263816		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000328252	ENST00000443831		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000328252	ENST00000461418		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-3UTR	ENST00000534838	ENST00000263816		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000534838	ENST00000443831		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000534838	ENST00000461418		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-3UTR	ENST00000483254	ENST00000263816		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000483254	ENST00000443831		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
intron-intron	ENST00000483254	ENST00000461418		ChiTaRS3.1			BQ369809	PAPPA	chr9	118988097	-	LRP2	chr2	169983795	-
Frame-shit	ENST00000274487	ENST00000262462		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
Frame-shit	ENST00000274487	ENST00000395266		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
Frame-shit	ENST00000274487	ENST00000506176		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000262462		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000395266		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000506176		ChiTaRS3.1			DN914949	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-intron	ENST00000309395	ENST00000309395		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000309395	ENST00000396051		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000309395	ENST00000511449		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000396051	ENST00000309395		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000396051	ENST00000396051		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000396051	ENST00000511449		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000511449	ENST00000309395		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000511449	ENST00000396051		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
intron-intron	ENST00000511449	ENST00000511449		ChiTaRS3.1			CV342709	MOB1B	chr4	71795726	-	MOB1B	chr4	71836917	-
3UTR-intron	ENST00000323666	ENST00000559332		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000558311		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000267973		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000558459		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000559332		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000558311		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000267973		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000558459		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000559332		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000558311		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000267973		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000558459		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000559332		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000558311		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000267973		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000558459		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000559332		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000558311		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000267973		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000558459		ChiTaRS3.1			BE929899	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
In-frame	ENST00000358127	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000358127	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000358127	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000358127	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000523241	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000523241	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000523241	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000523241	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520154	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520154	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520154	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000520154	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377852	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377852	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377852	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000377852	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377853	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377853	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377853	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000377853	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000522003	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000522003	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000522003	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000522003	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520281	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520281	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000520281	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000520281	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000414447	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000414447	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000414447	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000414447	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000523145	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000523145	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
Frame-shit	ENST00000523145	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000523145	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000446742	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000446742	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000446742	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000446742	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377847	ENST00000406775		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377847	ENST00000342771		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
In-frame	ENST00000377847	ENST00000403018		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
5CDS-intron	ENST00000377847	ENST00000489774		ChiTaRS3.1			EU784146	PAX5	chr9	36966546	-	AUTS2	chr7	69599518	+
intron-intron	ENST00000300737	ENST00000300737		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000300737	ENST00000527651		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000300737	ENST00000527484		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000300737	ENST00000533977		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527651	ENST00000300737		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527651	ENST00000527651		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527651	ENST00000527484		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527651	ENST00000533977		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527484	ENST00000300737		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527484	ENST00000527651		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527484	ENST00000527484		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000527484	ENST00000533977		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000533977	ENST00000300737		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000533977	ENST00000527651		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000533977	ENST00000527484		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
intron-intron	ENST00000533977	ENST00000533977		ChiTaRS3.1			BE176479	STIM1	chr11	3938821	-	STIM1	chr11	3940909	-
Frame-shit	ENST00000334444	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000334444	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000334444	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
5CDS-intron	ENST00000334444	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000265586	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000265586	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000265586	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
5CDS-intron	ENST00000265586	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000492216	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000492216	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000492216	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-intron	ENST00000492216	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000427120	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000427120	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000427120	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-intron	ENST00000427120	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000392579	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000392579	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000392579	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
5CDS-intron	ENST00000392579	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
In-frame	ENST00000382494	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
In-frame	ENST00000382494	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
In-frame	ENST00000382494	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
5CDS-intron	ENST00000382494	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000446941	ENST00000442011		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000446941	ENST00000305126		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-3CDS	ENST00000446941	ENST00000508076		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
intron-intron	ENST00000446941	ENST00000504185		ChiTaRS3.1			BC007229	ABCC5	chr3	183705558	-	TGFBI	chr5	135397183	+
Frame-shit	ENST00000267101	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000267101	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000267101	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000267101	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000267101	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000450146	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000450146	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000450146	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000450146	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000450146	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000415288	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000415288	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000415288	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000415288	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000415288	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000553131	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000553131	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000553131	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000553131	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000553131	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
intron-3CDS	ENST00000411731	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
intron-3CDS	ENST00000411731	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
intron-intron	ENST00000411731	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
intron-intron	ENST00000411731	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
intron-intron	ENST00000411731	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000549832	ENST00000376460		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
Frame-shit	ENST00000549832	ENST00000339416		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000549832	ENST00000448493		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000549832	ENST00000442173		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
5CDS-intron	ENST00000549832	ENST00000461998		ChiTaRS3.1			BG992869	ERBB3	chr12	56495582	-	DOCK9	chr13	99457392	+
3UTR-3CDS	ENST00000356940	ENST00000356940		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-intron	ENST00000356940	ENST00000535776		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-intron	ENST00000356940	ENST00000375802		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-3UTR	ENST00000356940	ENST00000465772		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-3CDS	ENST00000535776	ENST00000356940		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-intron	ENST00000535776	ENST00000535776		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-intron	ENST00000535776	ENST00000375802		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
3UTR-3UTR	ENST00000535776	ENST00000465772		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-3CDS	ENST00000375802	ENST00000356940		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-intron	ENST00000375802	ENST00000535776		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-intron	ENST00000375802	ENST00000375802		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-3UTR	ENST00000375802	ENST00000465772		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-3CDS	ENST00000465772	ENST00000356940		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-intron	ENST00000465772	ENST00000535776		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-intron	ENST00000465772	ENST00000375802		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
intron-3UTR	ENST00000465772	ENST00000465772		ChiTaRS3.1			EL595119	RAB18	chr10	27827429	-	RAB18	chr10	27822755	+
5CDS-intron	ENST00000368170	ENST00000303635		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000439411		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000476163		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000557126		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000473578		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000467404		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
5CDS-intron	ENST00000368170	ENST00000476864		ChiTaRS3.1			DY655389	CD1C	chr1	158262009	+	CAMTA1	chr1	7550941	+
intron-intron	ENST00000381061	ENST00000381061		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000381061	ENST00000252934		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000381061	ENST00000498009		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000381061	ENST00000402380		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000252934	ENST00000381061		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000252934	ENST00000252934		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000252934	ENST00000498009		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000252934	ENST00000402380		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000498009	ENST00000381061		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000498009	ENST00000252934		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000498009	ENST00000498009		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000498009	ENST00000402380		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000402380	ENST00000381061		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000402380	ENST00000252934		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000402380	ENST00000498009		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
intron-intron	ENST00000402380	ENST00000402380		ChiTaRS3.1			CV361289	ATXN10	chr22	46181871	+	ATXN10	chr22	46182047	-
3UTR-3UTR	ENST00000324849	ENST00000324849		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
3UTR-intron	ENST00000324849	ENST00000324815		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
3UTR-intron	ENST00000324849	ENST00000521829		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
3UTR-intron	ENST00000324849	ENST00000521005		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
3UTR-intron	ENST00000324849	ENST00000521162		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-3UTR	ENST00000324815	ENST00000324849		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000324815	ENST00000324815		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000324815	ENST00000521829		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000324815	ENST00000521005		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000324815	ENST00000521162		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-3UTR	ENST00000521829	ENST00000324849		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521829	ENST00000324815		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521829	ENST00000521829		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521829	ENST00000521005		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521829	ENST00000521162		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-3UTR	ENST00000521005	ENST00000324849		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521005	ENST00000324815		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521005	ENST00000521829		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521005	ENST00000521005		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521005	ENST00000521162		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-3UTR	ENST00000521162	ENST00000324849		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521162	ENST00000324815		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521162	ENST00000521829		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521162	ENST00000521005		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-intron	ENST00000521162	ENST00000521162		ChiTaRS3.1			BQ013499	VPS37A	chr8	17154098	-	VPS37A	chr8	17154618	-
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			BF868959	IGKC	chr2	89156894	+	IGKC	chr2	89157117	-
intron-intron	ENST00000406091	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000406091		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000262231		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000507740		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000522174		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000436393		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000339750		ChiTaRS3.1			AV746139	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM600680	BCR	chr22	23632358	+	ABL1	chr9	133729652	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM600680	BCR	chr22	23632358	+	ABL1	chr9	133729652	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM600680	BCR	chr22	23632358	+	ABL1	chr9	133729652	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM600680	BCR	chr22	23632358	+	ABL1	chr9	133729652	+
intron-intron	ENST00000439174	ENST00000257821		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000439174	ENST00000323180		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000439174	ENST00000418153		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000439174	ENST00000527753		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000541118	ENST00000257821		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000541118	ENST00000323180		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000541118	ENST00000418153		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000541118	ENST00000527753		ChiTaRS3.1			AI093849	GNA13	chr17	63039408	+	PHF21A	chr11	46105873	-
intron-intron	ENST00000489714	ENST00000280333		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000489714	ENST00000484400		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000536175	ENST00000280333		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000536175	ENST00000484400		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000243344	ENST00000280333		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
intron-intron	ENST00000243344	ENST00000484400		ChiTaRS3.1			BX111099	TTC21B	chr2	166730595	+	DOCK1	chr10	128883739	-
3UTR-3CDS	ENST00000401419	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000401419	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000397129	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000397129	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000404802	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000404802	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000341116	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000341116	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000429360	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000429360	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000404393	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000404393	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-3CDS	ENST00000397225	ENST00000376701		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
3UTR-intron	ENST00000397225	ENST00000483750		ChiTaRS3.1			CB157649	MPST	chr22	37425623	-	WAS	chrX	48547792	+
intron-intron	ENST00000343348	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000343348	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000257414	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000510263	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000513137	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000282394	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503865	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372391		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000372388		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-intron	ENST00000503962	ENST00000459739		ChiTaRS3.1			BF990529	SEMA6A	chr5	115781980	-	DLG5	chr10	79572329	+
intron-3UTR	ENST00000305557	ENST00000361475		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000305557	ENST00000536701		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000305557	ENST00000536724		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-3UTR	ENST00000272430	ENST00000361475		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000272430	ENST00000536701		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000272430	ENST00000536724		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-3UTR	ENST00000233330	ENST00000361475		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000233330	ENST00000536701		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000233330	ENST00000536724		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-3UTR	ENST00000484453	ENST00000361475		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000484453	ENST00000536701		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000484453	ENST00000536724		ChiTaRS3.1			BI035789	RTKN	chr2	74653488	-	TGM2	chr20	36758239	+
intron-intron	ENST00000589328	ENST00000366558		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000366559		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000484628		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000366557		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366558		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366559		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000484628		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366557		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366558		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366559		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000484628		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366557		ChiTaRS3.1			AI819879	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000336431	ENST00000484368		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000336431	ENST00000344529		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000336431	ENST00000367728		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000336431	ENST00000258324		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000469018	ENST00000484368		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000469018	ENST00000344529		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000469018	ENST00000367728		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-intron	ENST00000469018	ENST00000258324		ChiTaRS3.1			BI043619	GGT7	chr20	33444053	-	PIGC	chr1	172411581	+
intron-3CDS	ENST00000348639	ENST00000348639		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3CDS	ENST00000348639	ENST00000326828		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-intron	ENST00000348639	ENST00000559941		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3CDS	ENST00000326828	ENST00000348639		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3CDS	ENST00000326828	ENST00000326828		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-intron	ENST00000326828	ENST00000559941		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3CDS	ENST00000559941	ENST00000348639		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3CDS	ENST00000559941	ENST00000326828		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-intron	ENST00000559941	ENST00000559941		ChiTaRS3.1			BM728759	CHRNA3	chr15	78888336	-	CHRNA3	chr15	78893963	-
intron-3UTR	ENST00000366730	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366730	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366730	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366730	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366730	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366730	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366730	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000391865	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000391865	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000391865	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000391865	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000391865	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000391865	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000391865	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366726	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366726	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366726	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366726	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366726	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366726	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366726	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000312726	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000312726	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000312726	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000312726	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000312726	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000312726	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000312726	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366728	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366728	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366728	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366728	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366728	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366728	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366728	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366723	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366723	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366723	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366723	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366723	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366723	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366723	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366722	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366722	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366722	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366722	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366722	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366722	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366722	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366721	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366721	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366721	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366721	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366721	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366721	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366721	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366718	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366718	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366718	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366718	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366718	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366718	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366718	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-3UTR	ENST00000470040	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-intron	ENST00000470040	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-3UTR	ENST00000470040	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-intron	ENST00000470040	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-intron	ENST00000470040	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-intron	ENST00000470040	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-intron	ENST00000470040	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366716	ENST00000257261		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366716	ENST00000522056		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-3UTR	ENST00000366716	ENST00000278840		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366716	ENST00000521849		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366716	ENST00000574708		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366716	ENST00000522639		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
intron-intron	ENST00000366716	ENST00000517839		ChiTaRS3.1			BG742639	GUK1	chr1	228333551	+	FADS2	chr11	61634285	+
3UTR-3UTR	ENST00000561311	ENST00000561311		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-3UTR	ENST00000561311	ENST00000306829		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-intron	ENST00000561311	ENST00000559908		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-intron	ENST00000561311	ENST00000472902		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-3UTR	ENST00000306829	ENST00000561311		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-3UTR	ENST00000306829	ENST00000306829		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-intron	ENST00000306829	ENST00000559908		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-intron	ENST00000306829	ENST00000472902		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-3UTR	ENST00000559908	ENST00000561311		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-3UTR	ENST00000559908	ENST00000306829		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-intron	ENST00000559908	ENST00000559908		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-intron	ENST00000559908	ENST00000472902		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-3UTR	ENST00000472902	ENST00000561311		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-3UTR	ENST00000472902	ENST00000306829		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-intron	ENST00000472902	ENST00000559908		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
intron-intron	ENST00000472902	ENST00000472902		ChiTaRS3.1			AW391929	TLN2	chr15	63135318	+	TLN2	chr15	63135412	-
3UTR-3UTR	ENST00000319441	ENST00000319441		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000543666		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000319441	ENST00000535860		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000543666	ENST00000319441		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000543666		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000543666	ENST00000535860		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-3UTR	ENST00000535860	ENST00000319441		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000543666		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
intron-intron	ENST00000535860	ENST00000535860		ChiTaRS3.1			AA484379	PCK1	chr20	56141455	+	PCK1	chr20	56141388	-
3UTR-intron	ENST00000275532	ENST00000398411		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
3UTR-3UTR	ENST00000275532	ENST00000376925		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
3UTR-3UTR	ENST00000275532	ENST00000398409		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-intron	ENST00000443322	ENST00000398411		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000443322	ENST00000376925		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000443322	ENST00000398409		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-intron	ENST00000510829	ENST00000398411		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000510829	ENST00000376925		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000510829	ENST00000398409		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-intron	ENST00000380828	ENST00000398411		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000380828	ENST00000376925		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000380828	ENST00000398409		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-intron	ENST00000451741	ENST00000398411		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000451741	ENST00000376925		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
intron-3UTR	ENST00000451741	ENST00000398409		ChiTaRS3.1			BM662819	KCTD7	chr7	66107811	-	CST3	chr20	23614549	+
Frame-shit	ENST00000361924	ENST00000506502		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
Frame-shit	ENST00000361924	ENST00000265271		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
intron-3CDS	ENST00000435830	ENST00000506502		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
intron-3CDS	ENST00000435830	ENST00000265271		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
intron-3CDS	ENST00000444882	ENST00000506502		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
intron-3CDS	ENST00000444882	ENST00000265271		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
Frame-shit	ENST00000356847	ENST00000506502		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
Frame-shit	ENST00000356847	ENST00000265271		ChiTaRS3.1			BG988919	GOLGA4	chr3	37370478	+	RBM27	chr5	145613283	-
intron-intron	ENST00000303113	ENST00000303113		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000453626		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000303071		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303113	ENST00000432378		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000303113		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000453626		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000303071		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000453626	ENST00000432378		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000303113		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000453626		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000303071		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000303071	ENST00000432378		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000303113		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000453626		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000303071		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000432378	ENST00000432378		ChiTaRS3.1			BF764099	DONSON	chr21	35188042	+	DONSON	chr21	35124134	+
intron-intron	ENST00000296440	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000296440	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000296440	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000296440	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000296440	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000296440	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358459	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000358536	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000448774	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000456774	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000539605		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000357997		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000542282		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000542657		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000542374		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-intron	ENST00000465117	ENST00000337516		ChiTaRS3.1			BG980949	PLXNB1	chr3	48466284	+	ANKLE2	chr12	133312312	-
intron-3CDS	ENST00000355387	ENST00000217131		ChiTaRS3.1			AW858929	RNF220	chr1	45047204	+	CTSZ	chr20	57571735	+
intron-3CDS	ENST00000361799	ENST00000217131		ChiTaRS3.1			AW858929	RNF220	chr1	45047204	+	CTSZ	chr20	57571735	+
intron-3CDS	ENST00000372247	ENST00000217131		ChiTaRS3.1			AW858929	RNF220	chr1	45047204	+	CTSZ	chr20	57571735	+
intron-3CDS	ENST00000443020	ENST00000217131		ChiTaRS3.1			AW858929	RNF220	chr1	45047204	+	CTSZ	chr20	57571735	+
intron-3CDS	ENST00000480686	ENST00000217131		ChiTaRS3.1			AW858929	RNF220	chr1	45047204	+	CTSZ	chr20	57571735	+
intron-intron	ENST00000359282	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359282	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000603815	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000437231	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000447282	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000549863	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000359462	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000546463	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552296	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000552819	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000455667	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000439930	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000548933	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000359282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000603815		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000437231		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000447282		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000549863		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000359462		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000546463		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000552296		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000552819		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000455667		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000439930		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000548933		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000541275	ENST00000541275		ChiTaRS3.1			AW993599	PCBP2	chr12	53860593	-	PCBP2	chr12	53862404	-
intron-intron	ENST00000515064	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000515064	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000515064	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000515064	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000515064	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000515064	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000441778	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000304523	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000502640	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503178	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000515064		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000441778		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000304523		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000502640		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000503178		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-intron	ENST00000503829	ENST00000503829		ChiTaRS3.1			AK024979	LDB2	chr4	16876091	-	LDB2	chr4	16883977	-
intron-3UTR	ENST00000238616	ENST00000238616		ChiTaRS3.1			BF994799	NEK9	chr14	75550183	+	NEK9	chr14	75550056	-
intron-intron	ENST00000238616	ENST00000555763		ChiTaRS3.1			BF994799	NEK9	chr14	75550183	+	NEK9	chr14	75550056	-
intron-3UTR	ENST00000555763	ENST00000238616		ChiTaRS3.1			BF994799	NEK9	chr14	75550183	+	NEK9	chr14	75550056	-
intron-intron	ENST00000555763	ENST00000555763		ChiTaRS3.1			BF994799	NEK9	chr14	75550183	+	NEK9	chr14	75550056	-
intron-intron	ENST00000478654	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000478654	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000478654	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000478654	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000478654	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000460911	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000460911	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000460911	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000460911	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000460911	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000350995	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000350995	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000350995	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000350995	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000350995	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000320356	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000320356	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000320356	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000320356	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000320356	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000541220	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000541220	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000541220	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000541220	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000541220	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000476773	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000476773	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000476773	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000476773	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000476773	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000483967	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000483967	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000483967	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000483967	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000483967	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000536783	ENST00000308664		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-3UTR	ENST00000536783	ENST00000395494		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000536783	ENST00000539276		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000536783	ENST00000550248		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
intron-intron	ENST00000536783	ENST00000552636		ChiTaRS3.1			AI207549	EZH2	chr7	148579372	+	ATP2A2	chr12	110788015	+
5CDS-5UTR	ENST00000354725	ENST00000241651		ChiTaRS3.1			BF204429	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-5UTR	ENST00000467238	ENST00000241651		ChiTaRS3.1			BF204429	SND1	chr7	127527996	-	MYOG	chr1	203055113	-
intron-intron	ENST00000435030	ENST00000526568		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000527979		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000533400		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000436863		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000393136		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000446369		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000353247		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000594519		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000598974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000415981		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000593315		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000525825		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000534497		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000531166		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000435030	ENST00000528974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000526568		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000527979		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000533400		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000436863		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000393136		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000446369		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000353247		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000594519		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000598974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000415981		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000593315		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000525825		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000534497		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000531166		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000414838	ENST00000528974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000526568		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000527979		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000533400		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000436863		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000393136		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000446369		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000353247		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000594519		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000598974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000415981		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000593315		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000525825		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000534497		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000531166		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000464066	ENST00000528974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000526568		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000527979		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000533400		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000436863		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000393136		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000446369		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000353247		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000594519		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000598974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000415981		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000593315		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000525825		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000534497		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000531166		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000397413	ENST00000528974		ChiTaRS3.1			BP424829	KIF5C	chr2	149843021	-	CASP1	chr11	104915386	-
intron-intron	ENST00000456518	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000456518	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000456518	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000456518	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000456518	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397174	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397174	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397174	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397174	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397174	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000402904	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000402904	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000402904	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000402904	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000402904	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361191	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361191	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361191	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361191	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361191	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397171	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397171	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397171	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397171	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000397171	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361705	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361705	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361705	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361705	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000361705	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000326197	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000326197	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000326197	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000326197	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000326197	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372595	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372595	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372595	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372595	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372595	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000337495	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000337495	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000337495	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000337495	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000337495	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372596	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372596	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372596	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372596	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372596	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372597	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372597	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372597	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372597	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000372597	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000472037	ENST00000356239		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000472037	ENST00000358100		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000472037	ENST00000359028		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000472037	ENST00000394564		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000472037	ENST00000491695		ChiTaRS3.1			AW468719	SCMH1	chr1	41528587	-	AKAP9	chr7	91702670	-
intron-intron	ENST00000379589	ENST00000278590		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000379589	ENST00000528673		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000379589	ENST00000453089		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000495922	ENST00000278590		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000495922	ENST00000528673		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000495922	ENST00000453089		ChiTaRS3.1			BE159909	LHFP	chr13	40072620	-	ZC3H12C	chr11	109995090	-
intron-intron	ENST00000484698	ENST00000393469		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000484698	ENST00000423114		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000484698	ENST00000469902		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000484698	ENST00000314584		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000484698	ENST00000430155		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000484698	ENST00000465475		ChiTaRS3.1			BF375829	LINC00882	chr3	106794383	+	SLC12A8	chr3	124806683	+
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000445143		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000426650		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BE079919	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000410075	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000410075	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000410075	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000410075	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000410075	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000410075	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000377802	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
3UTR-intron	ENST00000355812	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409544	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000264447	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000376030		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000503743		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000422387		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000361144		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000400798		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
5CDS-intron	ENST00000409407	ENST00000400797		ChiTaRS3.1			BE939999	ZNF638	chr2	71660365	+	KAZN	chr1	15345025	+
intron-intron	ENST00000435120	ENST00000239926		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000435120	ENST00000421631		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000435120	ENST00000509812		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000435120	ENST00000515645		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000203630	ENST00000239926		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000203630	ENST00000421631		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000203630	ENST00000509812		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000203630	ENST00000515645		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000542154	ENST00000239926		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000542154	ENST00000421631		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000542154	ENST00000509812		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000542154	ENST00000515645		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000539187	ENST00000239926		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000539187	ENST00000421631		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000539187	ENST00000509812		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000539187	ENST00000515645		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000564181	ENST00000239926		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000564181	ENST00000421631		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000564181	ENST00000509812		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000564181	ENST00000515645		ChiTaRS3.1			BM806519	MLF2	chr12	6875896	+	MYOT	chr5	137088934	-
intron-intron	ENST00000425327	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000425327	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000393775	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000393775	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000489689	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000489689	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000354673	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000354673	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000441144	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000441144	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000491903	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000491903	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000459718	ENST00000413292		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-5UTR	ENST00000459718	ENST00000164133		ChiTaRS3.1			AB209289	IGSF11	chr3	118691581	+	PPP2R5B	chr11	64692198	+
intron-intron	ENST00000529225	ENST00000520602		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000370576		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000536274		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000370578		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000414978		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000519895		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000370573		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000338585		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000529225	ENST00000483690		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000520602		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000370576		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000536274		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000370578		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000414978		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000519895		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000370573		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000338585		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000440460	ENST00000483690		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000520602		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000370576		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000536274		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000370578		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000414978		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000519895		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000370573		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000338585		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000389821	ENST00000483690		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000520602		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000370576		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000536274		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000370578		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000414978		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000519895		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000370573		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000338585		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000531396	ENST00000483690		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000520602		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000370576		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000536274		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000370578		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000414978		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000519895		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000370573		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000338585		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-intron	ENST00000315253	ENST00000483690		ChiTaRS3.1			AB209679	DIXDC1	chr11	111817226	+	MCF2	chrX	138688401	-
intron-3CDS	ENST00000359139	ENST00000456435		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000318967		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000435409		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000512605		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000359139	ENST00000476843		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000456435		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000318967		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000435409		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000512605		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395741	ENST00000476843		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000456435		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000318967		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000435409		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000512605		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395744	ENST00000476843		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000456435		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000318967		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000435409		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000512605		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000216061	ENST00000476843		ChiTaRS3.1			BE932669	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
3UTR-intron	ENST00000323146	ENST00000351960		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-intron	ENST00000323146	ENST00000358965		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-intron	ENST00000323146	ENST00000393695		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-5UTR	ENST00000323146	ENST00000543450		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
intron-intron	ENST00000508770	ENST00000351960		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
intron-intron	ENST00000508770	ENST00000358965		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
intron-intron	ENST00000508770	ENST00000393695		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
intron-5UTR	ENST00000508770	ENST00000543450		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-intron	ENST00000514199	ENST00000351960		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-intron	ENST00000514199	ENST00000358965		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-intron	ENST00000514199	ENST00000393695		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
3UTR-5UTR	ENST00000514199	ENST00000543450		ChiTaRS3.1			AI243479	SLC35A4	chr5	139948336	-	NUMA1	chr11	71779258	+
intron-3UTR	ENST00000444214	ENST00000511685		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000444214	ENST00000406950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000444214	ENST00000502950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-3UTR	ENST00000550765	ENST00000511685		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000550765	ENST00000406950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000550765	ENST00000502950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-3UTR	ENST00000552878	ENST00000511685		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000552878	ENST00000406950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000552878	ENST00000502950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-3UTR	ENST00000453172	ENST00000511685		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000453172	ENST00000406950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
intron-intron	ENST00000453172	ENST00000502950		ChiTaRS3.1			BF964329	FKBP11	chr12	49316146	+	TENM3	chr4	183723933	+
5CDS-intron	ENST00000344691	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000344691	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000344691	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000325074	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000325074	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000437180	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000437180	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000300305	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000300305	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000399240	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000399240	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000486278	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000486278	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-intron	ENST00000494829	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-5UTR	ENST00000494829	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000264674		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000392736		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000464456		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000472280		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000494292		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000468789		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000460814		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-intron	ENST00000358356	ENST00000433243		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
5CDS-5UTR	ENST00000358356	ENST00000485957		ChiTaRS3.1			S69002	RUNX1	chr21	36231771	-	MECOM	chr3	169099312	-
intron-3UTR	ENST00000282120	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000282120	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000282120	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000282120	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000282120	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000282120	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000377386	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000377386	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000377386	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000377386	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000377386	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000377386	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000398263	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000398263	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000398263	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000398263	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000398263	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000398263	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409232	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409232	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409232	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409232	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409232	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000409232	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409015	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409015	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409015	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409015	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000409015	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000409015	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000444342	ENST00000282120		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000444342	ENST00000377386		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000444342	ENST00000398263		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000444342	ENST00000409232		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-3UTR	ENST00000444342	ENST00000409015		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
intron-intron	ENST00000444342	ENST00000444342		ChiTaRS3.1			BE933259	TGOLN2	chr2	85549344	-	TGOLN2	chr2	85549479	+
3UTR-intron	ENST00000323666	ENST00000559332		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000558311		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000267973		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000323666	ENST00000558459		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000559332		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000558311		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000267973		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000546753	ENST00000558459		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000559332		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000558311		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000267973		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000261220	ENST00000558459		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000559332		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000558311		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000267973		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000550777	ENST00000558459		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000559332		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000558311		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000267973		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
3UTR-intron	ENST00000551840	ENST00000558459		ChiTaRS3.1			BE767789	METAP2	chr12	95907770	-	WDR61	chr15	78578361	+
intron-3UTR	ENST00000431532	ENST00000431532		ChiTaRS3.1			CA314359	ZNHIT6	chr1	86118903	+	ZNHIT6	chr1	86118996	-
intron-3UTR	ENST00000431532	ENST00000370574		ChiTaRS3.1			CA314359	ZNHIT6	chr1	86118903	+	ZNHIT6	chr1	86118996	-
intron-3UTR	ENST00000370574	ENST00000431532		ChiTaRS3.1			CA314359	ZNHIT6	chr1	86118903	+	ZNHIT6	chr1	86118996	-
intron-3UTR	ENST00000370574	ENST00000370574		ChiTaRS3.1			CA314359	ZNHIT6	chr1	86118903	+	ZNHIT6	chr1	86118996	-
3UTR-3UTR	ENST00000375859	ENST00000375859		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000375859	ENST00000541629		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000375859	ENST00000469017		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000541629	ENST00000375859		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000541629	ENST00000541629		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000541629	ENST00000469017		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000469017	ENST00000375859		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000469017	ENST00000541629		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
3UTR-3UTR	ENST00000469017	ENST00000469017		ChiTaRS3.1			AI014719	SPIN1	chr9	91090514	-	SPIN1	chr9	91090475	+
intron-intron	ENST00000396353	ENST00000261965		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396353	ENST00000375669		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396353	ENST00000462580		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000261965		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000375669		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396355	ENST00000462580		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000261965		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000375669		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000396354	ENST00000462580		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000261965		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000375669		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000342673	ENST00000462580		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000261965		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000375669		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-intron	ENST00000571896	ENST00000462580		ChiTaRS3.1			AW366689	NDE1	chr16	15797792	-	TUBGCP3	chr13	113193369	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911179	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911179	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911179	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911179	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000334049	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000334049	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000334049	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000334049	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000334049	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000334049	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000535121	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000269162	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000423027	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000590972	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000334049		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000535121		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000269162		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000423027		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000590972		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-intron	ENST00000602628	ENST00000602628		ChiTaRS3.1			BX507339	GNAL	chr18	11852054	-	GNAL	chr18	11851484	+
intron-3CDS	ENST00000357395	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000357395	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000357395	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000358025	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000358025	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000358025	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000344113	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000344113	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000344113	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000341472	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000341472	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000341472	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000356081	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000356081	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000356081	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000554584	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000554584	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000554584	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000555002	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000555002	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000555002	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000394768	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000394768	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000394768	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000556725	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000556725	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000556725	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000553455	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000553455	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000553455	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000555022	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000555022	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000555022	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000554805	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000554805	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000554805	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000458046	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000458046	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000458046	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000441438	ENST00000379442		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-3CDS	ENST00000441438	ENST00000536621		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000441438	ENST00000467414		ChiTaRS3.1			AW603439	SYNE2	chr14	64613669	-	MUC12	chr7	100657290	+
intron-intron	ENST00000535193	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000543771	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000381306	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000381309	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000442236	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000489243	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000536108	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000428870	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000401787	ENST00000390168		ChiTaRS3.1			AI174879	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-3UTR	ENST00000216085	ENST00000392562		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-3UTR	ENST00000216085	ENST00000316804		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-3UTR	ENST00000216085	ENST00000316615		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-3UTR	ENST00000216085	ENST00000392563		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-3UTR	ENST00000216085	ENST00000392564		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-intron	ENST00000216085	ENST00000578961		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-intron	ENST00000216085	ENST00000462266		ChiTaRS3.1			BG676409	RHBDD3	chr22	29656124	-	GRB2	chr17	73314607	+
intron-intron	ENST00000283882	ENST00000372307		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000372306		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000372310		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000475075		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000360584		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000357730		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000537678		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000283882	ENST00000492434		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000372307		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000372306		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000372310		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000475075		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000360584		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000357730		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000537678		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000564286	ENST00000492434		ChiTaRS3.1			BE829689	CFDP1	chr16	75446474	-	SLC6A9	chr1	44490914	+
intron-intron	ENST00000394947	ENST00000485702		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000412216		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000301399		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000420592		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000451628		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000485702		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000412216		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000301399		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000420592		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000451628		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000485702		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000412216		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000301399		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000420592		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000451628		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000485702		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000412216		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000301399		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000420592		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000451628		ChiTaRS3.1			BQ346619	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
5CDS-5UTR	ENST00000341267	ENST00000341267		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
5CDS-5UTR	ENST00000341267	ENST00000331224		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
5CDS-5UTR	ENST00000341267	ENST00000556051		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
5CDS-5UTR	ENST00000331224	ENST00000341267		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
5CDS-5UTR	ENST00000331224	ENST00000331224		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
5CDS-5UTR	ENST00000331224	ENST00000556051		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
intron-5UTR	ENST00000556051	ENST00000341267		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
intron-5UTR	ENST00000556051	ENST00000331224		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
intron-5UTR	ENST00000556051	ENST00000556051		ChiTaRS3.1			BF791649	DLK1	chr14	101200514	+	DLK1	chr14	101193363	+
intron-intron	ENST00000315183	ENST00000315183		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000315183	ENST00000562829		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000315183	ENST00000395799		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000315183	ENST00000432286		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000562829	ENST00000315183		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000562829	ENST00000562829		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000562829	ENST00000395799		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000562829	ENST00000432286		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000395799	ENST00000315183		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000395799	ENST00000562829		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000395799	ENST00000395799		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000395799	ENST00000432286		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000432286	ENST00000315183		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000432286	ENST00000562829		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000432286	ENST00000395799		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-intron	ENST00000432286	ENST00000432286		ChiTaRS3.1			AA501799	TNRC6A	chr16	24780527	+	TNRC6A	chr16	24780356	-
intron-3UTR	ENST00000376959	ENST00000389467		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000376959	ENST00000446231		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000376959	ENST00000565224		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000376959	ENST00000567737		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000391818	ENST00000389467		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000391818	ENST00000446231		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000391818	ENST00000565224		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000391818	ENST00000567737		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000474951	ENST00000389467		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000474951	ENST00000446231		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000474951	ENST00000565224		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000474951	ENST00000567737		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000477616	ENST00000389467		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000477616	ENST00000446231		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000477616	ENST00000565224		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-intron	ENST00000477616	ENST00000567737		ChiTaRS3.1			DA571449	KCNC3	chr19	50821889	-	SMG1	chr16	18817139	-
intron-3UTR	ENST00000411503	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000411503	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000411503	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000411503	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000411503	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000411503	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000311890	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000311890	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000311890	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000311890	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000311890	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000311890	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000375718	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000375718	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000375718	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000375718	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000375718	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000375718	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000487046	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000487046	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000487046	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000487046	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000487046	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000487046	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000406363	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000406363	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000406363	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000406363	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000406363	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000406363	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000545268	ENST00000411503		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000545268	ENST00000311890		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-3UTR	ENST00000545268	ENST00000375718		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000545268	ENST00000487046		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000545268	ENST00000406363		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
intron-intron	ENST00000545268	ENST00000545268		ChiTaRS3.1			AJ711059	HSPB7	chr1	16341593	+	HSPB7	chr1	16341292	-
3UTR-intron	ENST00000513024	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000513024	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000513024	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000513024	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509638	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509638	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509638	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509638	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000508501	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000508501	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000508501	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000508501	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512946	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512946	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512946	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512946	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000313860	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000313860	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000313860	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000313860	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512632	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512632	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512632	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512632	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512820	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512820	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512820	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000512820	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000503057	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000503057	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000503057	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000503057	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000511496	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000511496	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000511496	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000511496	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000514096	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000514096	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000514096	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000514096	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509277	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509277	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509277	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509277	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000396595	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000396595	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000396595	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000396595	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000381753	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000381753	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000381753	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
3UTR-intron	ENST00000381753	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509454	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509454	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509454	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000509454	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000515785	ENST00000228136		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000515785	ENST00000422258		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000515785	ENST00000527893		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000515785	ENST00000525684		ChiTaRS3.1			BF929909	LIMCH1	chr4	41700588	-	C11orf58	chr11	16774200	+
intron-intron	ENST00000361339	ENST00000361339		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000426508		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000361339	ENST00000439987		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000361339		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000426508		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000426508	ENST00000439987		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000361339		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000426508		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000439987	ENST00000439987		ChiTaRS3.1			AI651969	IFT140	chr16	1584727	-	IFT140	chr16	1591389	-
intron-intron	ENST00000396634	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000396634	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376806	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376809	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376802	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000431930	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000444289	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551578	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000551120	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552193	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000416096	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000443552	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000417978	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547112	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552498	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549869	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000442939	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000457879	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000438861	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547271	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000453975	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000547522	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383605	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000383619	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000549224	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000376822	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000456012	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000550728	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000450342	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000454091	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000488889	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000552493	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000396634		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000376806		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000376809		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000376802		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000431930		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000444289		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000551578		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000551120		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000552193		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000416096		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000443552		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000417978		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000547112		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000552498		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000549869		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000442939		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000457879		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000438861		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000547271		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000453975		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000547522		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000383605		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000383619		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000549224		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000376822		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000456012		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000550728		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000450342		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000454091		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000488889		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000552493		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000414592	ENST00000414592		ChiTaRS3.1			BF854439	HLA-A	chr6	1424240	+	HLA-A	chr6	1424554	-
intron-intron	ENST00000553221	ENST00000425146		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000446737		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000372010		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000519681		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000372007		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000518291		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000484442		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000262836		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000360648		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000553221	ENST00000417227		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000425146		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000446737		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000372010		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000519681		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000372007		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000518291		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000484442		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000262836		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000360648		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000257910	ENST00000417227		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000425146		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000446737		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000372010		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000519681		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000372007		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000518291		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000484442		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000262836		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000360648		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000547992	ENST00000417227		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000425146		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000446737		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000372010		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000519681		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000372007		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000518291		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000484442		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000262836		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000360648		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
intron-intron	ENST00000547472	ENST00000417227		ChiTaRS3.1			AB209699	TSPAN31	chr12	58141952	+	PAK3	chrX	110382559	-
3UTR-intron	ENST00000553331	ENST00000553331		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000553331	ENST00000216832		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000553331	ENST00000556530		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000553331	ENST00000557680		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
5CDS-intron	ENST00000216832	ENST00000553331		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
5CDS-intron	ENST00000216832	ENST00000216832		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
5CDS-intron	ENST00000216832	ENST00000556530		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
5CDS-intron	ENST00000216832	ENST00000557680		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
intron-intron	ENST00000556530	ENST00000553331		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
intron-intron	ENST00000556530	ENST00000216832		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
intron-intron	ENST00000556530	ENST00000556530		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
intron-intron	ENST00000556530	ENST00000557680		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000557680	ENST00000553331		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000557680	ENST00000216832		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000557680	ENST00000556530		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000557680	ENST00000557680		ChiTaRS3.1			BQ774709	PNN	chr14	39648385	-	PNN	chr14	39650604	-
3UTR-intron	ENST00000229264	ENST00000521022		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
3UTR-intron	ENST00000229264	ENST00000416984		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
3UTR-intron	ENST00000229264	ENST00000521777		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
3UTR-intron	ENST00000229264	ENST00000397363		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
3UTR-intron	ENST00000229264	ENST00000521070		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000435982	ENST00000521022		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000435982	ENST00000416984		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000435982	ENST00000521777		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000435982	ENST00000397363		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000435982	ENST00000521070		ChiTaRS3.1			BM665849	GNB3	chr12	6956490	-	INTS9	chr8	28654528	-
intron-intron	ENST00000506455	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000506455	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000506455	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000506455	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000511108	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511108	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511108	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511108	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000511507	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511507	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511507	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000511507	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000515602	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000515602	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000515602	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000515602	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000455639	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000455639	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000455639	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000455639	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-intron	ENST00000393832	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000393832	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000393832	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000393832	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-intron	ENST00000296518	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000296518	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000296518	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
3UTR-3UTR	ENST00000296518	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000513574	ENST00000464451		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000513574	ENST00000243253		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000513574	ENST00000424880		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-3UTR	ENST00000513574	ENST00000483956		ChiTaRS3.1			AW897979	GUCY1A3	chr4	156653270	-	SEC61A1	chr3	127788885	+
intron-intron	ENST00000384994	ENST00000381980		ChiTaRS3.1			CV372969	NEAT1	chr11	65191803	+	C4orf19	chr4	37570178	+
intron-intron	ENST00000384994	ENST00000508175		ChiTaRS3.1			CV372969	NEAT1	chr11	65191803	+	C4orf19	chr4	37570178	+
intron-intron	ENST00000384994	ENST00000284437		ChiTaRS3.1			CV372969	NEAT1	chr11	65191803	+	C4orf19	chr4	37570178	+
intron-3CDS	ENST00000371224	ENST00000371224		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3CDS	ENST00000371224	ENST00000371221		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-5UTR	ENST00000371224	ENST00000483788		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3CDS	ENST00000371221	ENST00000371224		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3CDS	ENST00000371221	ENST00000371221		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-5UTR	ENST00000371221	ENST00000483788		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3CDS	ENST00000483788	ENST00000371224		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3CDS	ENST00000483788	ENST00000371221		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-5UTR	ENST00000483788	ENST00000483788		ChiTaRS3.1			BP341719	ALDH18A1	chr10	97371083	-	ALDH18A1	chr10	97413070	-
intron-3UTR	ENST00000325110	ENST00000325110		ChiTaRS3.1			AL048839	HMGCS1	chr5	43291083	+	HMGCS1	chr5	43291011	-
intron-3UTR	ENST00000325110	ENST00000433297		ChiTaRS3.1			AL048839	HMGCS1	chr5	43291083	+	HMGCS1	chr5	43291011	-
intron-3UTR	ENST00000433297	ENST00000325110		ChiTaRS3.1			AL048839	HMGCS1	chr5	43291083	+	HMGCS1	chr5	43291011	-
intron-3UTR	ENST00000433297	ENST00000433297		ChiTaRS3.1			AL048839	HMGCS1	chr5	43291083	+	HMGCS1	chr5	43291011	-
intron-intron	ENST00000555917	ENST00000342505		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
intron-intron	ENST00000555917	ENST00000465376		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
intron-intron	ENST00000361956	ENST00000342505		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
intron-intron	ENST00000361956	ENST00000465376		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
intron-intron	ENST00000381280	ENST00000342505		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
intron-intron	ENST00000381280	ENST00000465376		ChiTaRS3.1			BG005479	SMOC1	chr14	70430816	+	JAK1	chr1	65391371	-
Frame-shit	ENST00000415149	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000415149	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000415149	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000415149	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000415149	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
5CDS-intron	ENST00000415149	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000402543	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000402543	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000402543	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
In-frame	ENST00000402543	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000402543	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
5CDS-intron	ENST00000402543	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000325805	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000325805	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000325805	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000325805	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000325805	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
5CDS-intron	ENST00000325805	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000416476	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000416476	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000416476	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000416476	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000416476	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
5CDS-intron	ENST00000416476	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000406780	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000406780	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000406780	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000406780	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
Frame-shit	ENST00000406780	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
5CDS-intron	ENST00000406780	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-3CDS	ENST00000473542	ENST00000415149		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-3CDS	ENST00000473542	ENST00000402543		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-3CDS	ENST00000473542	ENST00000325805		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-3CDS	ENST00000473542	ENST00000416476		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-3CDS	ENST00000473542	ENST00000406780		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-intron	ENST00000473542	ENST00000473542		ChiTaRS3.1			BU675349	BBX	chr3	107524231	-	BBX	chr3	107520032	+
intron-intron	ENST00000551577	ENST00000265523		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000551577	ENST00000402924		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000266534	ENST00000265523		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000266534	ENST00000402924		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000536799	ENST00000265523		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000536799	ENST00000402924		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000546978	ENST00000265523		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
intron-intron	ENST00000546978	ENST00000402924		ChiTaRS3.1			BF744129	TMEM117	chr12	44488334	-	BLVRA	chr7	43807329	+
3UTR-3UTR	ENST00000262461	ENST00000595125		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
3UTR-3UTR	ENST00000262461	ENST00000423777		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
3UTR-intron	ENST00000262461	ENST00000600336		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-3UTR	ENST00000343225	ENST00000595125		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-3UTR	ENST00000343225	ENST00000423777		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-intron	ENST00000343225	ENST00000600336		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-3UTR	ENST00000507791	ENST00000595125		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-3UTR	ENST00000507791	ENST00000423777		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-intron	ENST00000507791	ENST00000600336		ChiTaRS3.1			BQ322269	SLC12A2	chr5	127524250	-	ATF5	chr19	50436438	-
intron-intron	ENST00000445299	ENST00000263174		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000445299	ENST00000605497		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000323460	ENST00000263174		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000323460	ENST00000605497		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000419026	ENST00000263174		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000419026	ENST00000605497		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000489744	ENST00000263174		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
intron-intron	ENST00000489744	ENST00000605497		ChiTaRS3.1			AW847799	SENP5	chr3	196656397	+	PALMD	chr1	100133481	+
Frame-shit	ENST00000247833	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000247833	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000378815	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000378815	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000325555	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000325555	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000483530	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000483530	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000550536	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000550536	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000362025	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000362025	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000551641	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000551641	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
Frame-shit	ENST00000553099	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
5CDS-intron	ENST00000553099	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-3CDS	ENST00000550847	ENST00000247833		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000378815		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000325555		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000483530		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000550536		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000362025		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000551641		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000553099		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-intron	ENST00000550847	ENST00000550847		ChiTaRS3.1			BQ375809	RAB3IP	chr12	70188967	-	RAB3IP	chr12	70206571	+
intron-5UTR	ENST00000372014	ENST00000372014		ChiTaRS3.1			AI217449	MRPL14	chr6	44081649	+	MRPL14	chr6	44095124	-
intron-intron	ENST00000545951	ENST00000545951		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000545951	ENST00000382839		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000545951	ENST00000324666		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000545951	ENST00000502458		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000545951	ENST00000505311		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000382839	ENST00000545951		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-3UTR	ENST00000382839	ENST00000382839		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-3UTR	ENST00000382839	ENST00000324666		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000382839	ENST00000502458		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000382839	ENST00000505311		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000324666	ENST00000545951		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-3UTR	ENST00000324666	ENST00000382839		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-3UTR	ENST00000324666	ENST00000324666		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000324666	ENST00000502458		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
3UTR-intron	ENST00000324666	ENST00000505311		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000502458	ENST00000545951		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000502458	ENST00000382839		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000502458	ENST00000324666		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000502458	ENST00000502458		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000502458	ENST00000505311		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000505311	ENST00000545951		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000505311	ENST00000382839		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-3UTR	ENST00000505311	ENST00000324666		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000505311	ENST00000502458		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-intron	ENST00000505311	ENST00000505311		ChiTaRS3.1			BU674639	FAM193A	chr4	2734207	-	FAM193A	chr4	2734022	+
intron-5UTR	ENST00000267202	ENST00000534797		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-5UTR	ENST00000267202	ENST00000397614		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-5UTR	ENST00000267202	ENST00000397615		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-intron	ENST00000267202	ENST00000397604		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-intron	ENST00000267202	ENST00000533410		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-intron	ENST00000267202	ENST00000438658		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-5UTR	ENST00000267202	ENST00000354420		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-5UTR	ENST00000267202	ENST00000356187		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-5UTR	ENST00000267202	ENST00000533592		ChiTaRS3.1			BF922979	VPS37B	chr12	123350276	+	RNH1	chr11	502197	-
intron-intron	ENST00000361168	ENST00000315677		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000581527		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000400147		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000400149		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000400155		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000400150		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000584874		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000534970		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000539435		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000581699		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000400145		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000515196		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000361168	ENST00000478161		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000315677		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000581527		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000400147		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000400149		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000400155		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000400150		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000584874		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000534970		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000539435		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000581699		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000400145		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000515196		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000368361	ENST00000478161		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000315677		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000581527		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000400147		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000400149		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000400155		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000400150		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000584874		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000534970		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000539435		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000581699		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000400145		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000515196		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000355560	ENST00000478161		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000315677		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000581527		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000400147		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000400149		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000400155		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000400150		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000584874		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000534970		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000539435		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000581699		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000400145		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000515196		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000497188	ENST00000478161		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000315677		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000581527		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000400147		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000400149		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000400155		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000400150		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000584874		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000534970		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000539435		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000581699		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000400145		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000515196		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000536801	ENST00000478161		ChiTaRS3.1			AW385079	CLK2	chr1	155233833	+	DLGAP1	chr18	4345828	-
intron-intron	ENST00000283365	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000283365	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000283365	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000283365	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000283365	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000283365	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000596745	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000596745	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000596745	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000596745	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000596745	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000315456	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000315456	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000315456	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000315456	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000315456	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598334	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598334	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598334	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598334	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598334	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000554864	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000554864	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000554864	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000554864	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000554864	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399121	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399121	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399121	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399121	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399121	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000595022	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000595022	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000595022	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000595022	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000595022	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269190	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269190	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269190	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269190	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269190	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399097	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399097	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399097	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399097	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399097	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000598774	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000598774	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000598774	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000598774	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000598774	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598142	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598142	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598142	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000598142	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000598142	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000348997	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000348997	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000348997	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000348997	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000348997	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000597599	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000597599	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000597599	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000597599	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000597599	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000269191	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000269191	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000269191	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000269191	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000269191	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000444659	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000444659	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000444659	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000444659	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000444659	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399113	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399113	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399113	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000399113	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000399113	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000601125	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000601125	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000601125	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000601125	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000601125	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269192	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269192	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269192	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000269192	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000269192	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000591182	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000591182	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000591182	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000591182	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000591182	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000597674	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000597674	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000597674	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-3UTR	ENST00000597674	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
3UTR-intron	ENST00000597674	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000556414	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000556414	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000556414	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000556414	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000556414	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000599844	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000599844	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000599844	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000599844	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000599844	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000590831	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000590831	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000590831	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000590831	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000590831	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000283365		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000596745		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000315456		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000598334		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000554864		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000399121		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000595022		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000269190		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000399097		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000592449	ENST00000598774		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000598142		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000592449	ENST00000348997		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000597599		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000592449	ENST00000269191		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000444659		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000399113		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000601125		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000269192		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000591182		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-3UTR	ENST00000592449	ENST00000597674		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000556414		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000599844		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000590831		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000592449	ENST00000592449		ChiTaRS3.1			AA322169	DTNA	chr18	32446409	-	DTNA	chr18	32446520	+
intron-intron	ENST00000467125	ENST00000467125		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000467125	ENST00000368498		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000467125	ENST00000535237		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000467125	ENST00000052569		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-intron	ENST00000368498	ENST00000467125		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000368498	ENST00000368498		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000368498	ENST00000535237		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000368498	ENST00000052569		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-intron	ENST00000535237	ENST00000467125		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000535237	ENST00000368498		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000535237	ENST00000535237		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000535237	ENST00000052569		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-intron	ENST00000052569	ENST00000467125		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000052569	ENST00000368498		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000052569	ENST00000535237		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000052569	ENST00000052569		ChiTaRS3.1			BM968919	GOPC	chr6	117881795	+	GOPC	chr6	117881890	-
intron-3UTR	ENST00000595125	ENST00000371657		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-5UTR	ENST00000595125	ENST00000396059		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000595125	ENST00000371674		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000595125	ENST00000371677		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000595125	ENST00000340309		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000595125	ENST00000420027		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000595125	ENST00000415862		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000371657		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-5UTR	ENST00000423777	ENST00000396059		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000371674		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000371677		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000340309		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000420027		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000423777	ENST00000415862		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000371657		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-5UTR	ENST00000600336	ENST00000396059		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000371674		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000371677		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000340309		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000420027		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
intron-3UTR	ENST00000600336	ENST00000415862		ChiTaRS3.1			AW248949	ATF5	chr19	50436966	-	UBE2V1	chr20	48698926	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			CA424749	MALAT1	chr11	65272520	-	MALAT1	chr11	65272500	+
3UTR-3UTR	ENST00000276533	ENST00000276533		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-intron	ENST00000276533	ENST00000520710		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-intron	ENST00000276533	ENST00000518671		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-3UTR	ENST00000276533	ENST00000523277		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-3UTR	ENST00000520710	ENST00000276533		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-intron	ENST00000520710	ENST00000520710		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-intron	ENST00000520710	ENST00000518671		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-3UTR	ENST00000520710	ENST00000523277		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-3UTR	ENST00000518671	ENST00000276533		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-intron	ENST00000518671	ENST00000520710		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-intron	ENST00000518671	ENST00000518671		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-3UTR	ENST00000518671	ENST00000523277		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-3UTR	ENST00000523277	ENST00000276533		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-intron	ENST00000523277	ENST00000520710		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-intron	ENST00000523277	ENST00000518671		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
3UTR-3UTR	ENST00000523277	ENST00000523277		ChiTaRS3.1			BE138739	GINS4	chr8	41402208	-	GINS4	chr8	41402034	+
intron-intron	ENST00000404479	ENST00000404479		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000404479	ENST00000318709		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000404479	ENST00000459629		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000404479	ENST00000409301		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000318709	ENST00000404479		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000318709	ENST00000318709		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000318709	ENST00000459629		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000318709	ENST00000409301		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000459629	ENST00000404479		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000459629	ENST00000318709		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000459629	ENST00000459629		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000459629	ENST00000409301		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000409301	ENST00000404479		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000409301	ENST00000318709		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000409301	ENST00000459629		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000409301	ENST00000409301		ChiTaRS3.1			AW753359	AVL9	chr7	32960378	+	AVL9	chr7	32973120	-
intron-intron	ENST00000398842	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398309		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000376104		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000418306		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000280241		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000543673		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000376106		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000330014		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000537455		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000524982		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000532653		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000531015		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398301		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000426717		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000404783		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398304		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000530800		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000472545		ChiTaRS3.1			T05549	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
5CDS-3UTR	ENST00000355303	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000355303	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000355303	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000398543	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000398543	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000398543	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000538023	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000538023	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000538023	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000316296	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000316296	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000316296	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000530676	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000530676	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000530676	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000531349	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-3UTR	ENST00000531349	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
5CDS-5UTR	ENST00000531349	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
intron-3UTR	ENST00000525494	ENST00000361906		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
intron-3UTR	ENST00000525494	ENST00000361684		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
intron-5UTR	ENST00000525494	ENST00000504337		ChiTaRS3.1			AA368369	ANO1	chr11	69999201	-	TMEM184B	chr22	38617284	+
intron-intron	ENST00000374662	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000374662	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000469186	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000427295	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000490492	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000454191	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000476285	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000422433	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000461067	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
5CDS-intron	ENST00000230236	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
3UTR-intron	ENST00000480183	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000414463	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000374662		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000469186		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000427295		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000490492		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000454191		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000476285		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000422433		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000461067		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000230236		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000480183		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000414463		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
intron-intron	ENST00000481255	ENST00000481255		ChiTaRS3.1			BI007869	HSD17B8	chr6	4405306	+	HSD17B8	chr6	4405615	-
Frame-shit	ENST00000372676	ENST00000372676		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-intron	ENST00000372676	ENST00000217425		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-intron	ENST00000372676	ENST00000339946		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-3UTR	ENST00000372676	ENST00000488143		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-3UTR	ENST00000372676	ENST00000342873		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
Frame-shit	ENST00000217425	ENST00000372676		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-intron	ENST00000217425	ENST00000217425		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-intron	ENST00000217425	ENST00000339946		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-3UTR	ENST00000217425	ENST00000488143		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
5CDS-3UTR	ENST00000217425	ENST00000342873		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3CDS	ENST00000339946	ENST00000372676		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000339946	ENST00000217425		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000339946	ENST00000339946		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000339946	ENST00000488143		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000339946	ENST00000342873		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3CDS	ENST00000488143	ENST00000372676		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000488143	ENST00000217425		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000488143	ENST00000339946		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000488143	ENST00000488143		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000488143	ENST00000342873		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3CDS	ENST00000342873	ENST00000372676		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000342873	ENST00000217425		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-intron	ENST00000342873	ENST00000339946		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000342873	ENST00000488143		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
intron-3UTR	ENST00000342873	ENST00000342873		ChiTaRS3.1			AA406009	WFDC2	chr20	44099143	-	WFDC2	chr20	44108651	+
3UTR-3UTR	ENST00000359947	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-intron	ENST00000359947	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000359947	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000359947	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000359947	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000359947	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000438120	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-intron	ENST00000438120	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000438120	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000438120	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000438120	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000438120	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372413	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-intron	ENST00000372413	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372413	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372413	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372413	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372413	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372414	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-intron	ENST00000372414	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372414	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372414	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372414	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000372414	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000422171	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-intron	ENST00000422171	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000422171	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000422171	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000422171	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000422171	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000496447	ENST00000359947		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-intron	ENST00000496447	ENST00000438120		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000496447	ENST00000372413		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000496447	ENST00000372414		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000496447	ENST00000422171		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
3UTR-3UTR	ENST00000496447	ENST00000496447		ChiTaRS3.1			BG292289	PTPRF	chr1	44088406	-	PTPRF	chr1	44088483	+
intron-3UTR	ENST00000447944	ENST00000357668		ChiTaRS3.1			BF895069	PNPT1	chr2	55899697	-	ASAP1	chr8	131065683	+
intron-3UTR	ENST00000447944	ENST00000518721		ChiTaRS3.1			BF895069	PNPT1	chr2	55899697	-	ASAP1	chr8	131065683	+
intron-intron	ENST00000447944	ENST00000520625		ChiTaRS3.1			BF895069	PNPT1	chr2	55899697	-	ASAP1	chr8	131065683	+
intron-3CDS	ENST00000361436	ENST00000361436		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000361436	ENST00000536368		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-5UTR	ENST00000361436	ENST00000497322		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000536368	ENST00000361436		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000536368	ENST00000536368		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-5UTR	ENST00000536368	ENST00000497322		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000497322	ENST00000361436		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000497322	ENST00000536368		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-5UTR	ENST00000497322	ENST00000497322		ChiTaRS3.1			AW277039	RPL12	chr9	130213673	+	RPL12	chr9	130213594	-
intron-3CDS	ENST00000263634	ENST00000215793		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000263634	ENST00000439242		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000215793		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000439242		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000215793		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000439242		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000215793		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000439242		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000215793		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000439242		ChiTaRS3.1			BE504929	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3UTR	ENST00000543196	ENST00000543196		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-3UTR	ENST00000543196	ENST00000356317		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-intron	ENST00000543196	ENST00000603203		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-3UTR	ENST00000356317	ENST00000543196		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-3UTR	ENST00000356317	ENST00000356317		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-intron	ENST00000356317	ENST00000603203		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-3UTR	ENST00000603203	ENST00000543196		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-3UTR	ENST00000603203	ENST00000356317		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-intron	ENST00000603203	ENST00000603203		ChiTaRS3.1			AI909009	GALNT6	chr12	51751944	+	GALNT6	chr12	51748032	-
intron-intron	ENST00000263736	ENST00000180173		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000263736	ENST00000521857		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000263736	ENST00000398099		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000263736	ENST00000523571		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000535761	ENST00000180173		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000535761	ENST00000521857		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000535761	ENST00000398099		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000535761	ENST00000523571		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000490133	ENST00000180173		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000490133	ENST00000521857		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000490133	ENST00000398099		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000490133	ENST00000523571		ChiTaRS3.1			AL117549	SRBD1	chr2	45789623	-	MTMR7	chr8	17161328	+
intron-intron	ENST00000439817	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000439817	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000439817	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000439817	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000439817	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000361464	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000361464	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000361464	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000361464	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000361464	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000482611	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000482611	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000482611	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000482611	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000482611	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000357797	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000357797	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000357797	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000357797	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000357797	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000370094	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000370094	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000370094	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000370094	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000370094	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000419011	ENST00000520701		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000419011	ENST00000243389		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000419011	ENST00000429484		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000419011	ENST00000521925		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
intron-intron	ENST00000419011	ENST00000521351		ChiTaRS3.1			DA433189	MGEA5	chr10	103577882	-	SLC36A1	chr5	150837706	+
3UTR-intron	ENST00000269499	ENST00000543953		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-3UTR	ENST00000269499	ENST00000218197		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000269499	ENST00000467496		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000269499	ENST00000339231		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000269499	ENST00000361980		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000269499	ENST00000545805		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000586834	ENST00000543953		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-3UTR	ENST00000586834	ENST00000218197		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000586834	ENST00000467496		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000586834	ENST00000339231		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000586834	ENST00000361980		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
3UTR-intron	ENST00000586834	ENST00000545805		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000590840	ENST00000543953		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-3UTR	ENST00000590840	ENST00000218197		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000590840	ENST00000467496		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000590840	ENST00000339231		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000590840	ENST00000361980		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000590840	ENST00000545805		ChiTaRS3.1			AI968179	ZCCHC2	chr18	60245396	-	SLC25A14	chrX	129506933	+
intron-intron	ENST00000409869	ENST00000440558		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000409869	ENST00000270464		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000409869	ENST00000419410		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000409869	ENST00000391735		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000409869	ENST00000396365		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000409869	ENST00000245621		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000440558		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000270464		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000419410		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000391735		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000396365		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000295095	ENST00000245621		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000440558		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000270464		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000419410		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000391735		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000396365		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-intron	ENST00000473426	ENST00000245621		ChiTaRS3.1			DA935999	ARHGAP15	chr2	144110407	+	LILRA6	chr19	54784870	-
intron-3CDS	ENST00000296440	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000296440	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000296440	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000358459	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000358459	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000358459	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000358536	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000358536	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000358536	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000448774	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000448774	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000448774	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000456774	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000456774	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000456774	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000465117	ENST00000215882		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3CDS	ENST00000465117	ENST00000451283		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-5UTR	ENST00000465117	ENST00000461267		ChiTaRS3.1			AA086119	PLXNB1	chr3	48445430	+	SLC25A1	chr22	19164455	-
intron-3UTR	ENST00000426959	ENST00000426959		ChiTaRS3.1			BQ723219	MEGF9	chr9	123364161	+	MEGF9	chr9	123364033	-
intron-3UTR	ENST00000426959	ENST00000373930		ChiTaRS3.1			BQ723219	MEGF9	chr9	123364161	+	MEGF9	chr9	123364033	-
intron-3UTR	ENST00000373930	ENST00000426959		ChiTaRS3.1			BQ723219	MEGF9	chr9	123364161	+	MEGF9	chr9	123364033	-
intron-3UTR	ENST00000373930	ENST00000373930		ChiTaRS3.1			BQ723219	MEGF9	chr9	123364161	+	MEGF9	chr9	123364033	-
intron-3CDS	ENST00000354473	ENST00000553331		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-3CDS	ENST00000354473	ENST00000216832		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-3CDS	ENST00000354473	ENST00000556530		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-intron	ENST00000354473	ENST00000557680		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-3CDS	ENST00000496809	ENST00000553331		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-3CDS	ENST00000496809	ENST00000216832		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-3CDS	ENST00000496809	ENST00000556530		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-intron	ENST00000496809	ENST00000557680		ChiTaRS3.1			AW449089	VPS72	chr1	151149044	+	PNN	chr14	39646623	+
intron-intron	ENST00000188312	ENST00000188312		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000188312	ENST00000546902		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000188312	ENST00000550813		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000188312	ENST00000552376		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000188312	ENST00000551617		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000546902	ENST00000188312		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000546902	ENST00000546902		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000546902	ENST00000550813		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000546902	ENST00000552376		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000546902	ENST00000551617		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000550813	ENST00000188312		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000550813	ENST00000546902		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000550813	ENST00000550813		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000550813	ENST00000552376		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000550813	ENST00000551617		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000552376	ENST00000188312		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000552376	ENST00000546902		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000552376	ENST00000550813		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000552376	ENST00000552376		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000552376	ENST00000551617		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000551617	ENST00000188312		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000551617	ENST00000546902		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000551617	ENST00000550813		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000551617	ENST00000552376		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000551617	ENST00000551617		ChiTaRS3.1			BX103169	ACTR6	chr12	100604247	+	ACTR6	chr12	100602781	+
intron-intron	ENST00000375078	ENST00000366997		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-intron	ENST00000375078	ENST00000366996		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-intron	ENST00000375078	ENST00000488600		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-intron	ENST00000489020	ENST00000366997		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-intron	ENST00000489020	ENST00000366996		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-intron	ENST00000489020	ENST00000488600		ChiTaRS3.1			BE936059	CAMK2N1	chr1	20809386	+	LPGAT1	chr1	211983484	-
intron-5UTR	ENST00000333503	ENST00000398519		ChiTaRS3.1			BC080619	PGP	chr16	2264838	+	CSNK1D	chr17	80231293	-
intron-5UTR	ENST00000333503	ENST00000314028		ChiTaRS3.1			BC080619	PGP	chr16	2264838	+	CSNK1D	chr17	80231293	-
intron-5UTR	ENST00000333503	ENST00000392334		ChiTaRS3.1			BC080619	PGP	chr16	2264838	+	CSNK1D	chr17	80231293	-
intron-intron	ENST00000333503	ENST00000578904		ChiTaRS3.1			BC080619	PGP	chr16	2264838	+	CSNK1D	chr17	80231293	-
intron-intron	ENST00000319592	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000319592	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000319592	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000319592	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000319592	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381793	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381793	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381793	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381793	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381793	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381795	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381795	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381795	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381795	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000381795	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000295971	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000295971	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000295971	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000295971	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000295971	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000514014	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000514014	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000514014	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000514014	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000514014	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000515809	ENST00000380050		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000515809	ENST00000265741		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000515809	ENST00000406263		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000515809	ENST00000436577		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000515809	ENST00000496279		ChiTaRS3.1			AW993729	RBM47	chr4	40505543	+	CDK14	chr7	90610407	+
intron-intron	ENST00000369763	ENST00000393328		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000369763	ENST00000393331		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000369763	ENST00000347630		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000369763	ENST00000504102		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000369763	ENST00000503676		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000369763	ENST00000513080		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000393328		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000393331		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000347630		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000504102		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000503676		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000494675	ENST00000513080		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000393328		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000393331		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000347630		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000504102		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000503676		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-intron	ENST00000485275	ENST00000513080		ChiTaRS3.1			BE066439	LRIF1	chr1	111499798	+	SPOP	chr17	47738793	+
intron-3UTR	ENST00000360822	ENST00000360822		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360822	ENST00000359309		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360822	ENST00000349780		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360822	ENST00000360190		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000360822	ENST00000480467		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000359309	ENST00000360822		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000359309	ENST00000359309		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000359309	ENST00000349780		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000359309	ENST00000360190		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000359309	ENST00000480467		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000349780	ENST00000360822		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000349780	ENST00000359309		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000349780	ENST00000349780		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000349780	ENST00000360190		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000349780	ENST00000480467		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360190	ENST00000360822		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360190	ENST00000359309		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360190	ENST00000349780		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000360190	ENST00000360190		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000360190	ENST00000480467		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000480467	ENST00000360822		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000480467	ENST00000359309		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000480467	ENST00000349780		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-3UTR	ENST00000480467	ENST00000360190		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000480467	ENST00000480467		ChiTaRS3.1			BU540229	CDK5RAP2	chr9	123151422	+	CDK5RAP2	chr9	123151301	-
intron-intron	ENST00000513040	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000513040		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000285689		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000515200		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000544396		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000542322		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000514932		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000543198		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000502348		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000511134		ChiTaRS3.1			BM983689	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
3UTR-3UTR	ENST00000263733	ENST00000263733		ChiTaRS3.1			N84069	FAM20B	chr1	179044689	-	FAM20B	chr1	179044749	+
intron-3CDS	ENST00000569482	ENST00000569482		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000569482	ENST00000565683		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000569482	ENST00000563622		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000569482	ENST00000267978		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000569482	ENST00000563539		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000565683	ENST00000569482		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000565683	ENST00000565683		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000565683	ENST00000563622		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000565683	ENST00000267978		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000565683	ENST00000563539		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563622	ENST00000569482		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563622	ENST00000565683		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563622	ENST00000563622		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563622	ENST00000267978		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000563622	ENST00000563539		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000267978	ENST00000569482		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000267978	ENST00000565683		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000267978	ENST00000563622		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000267978	ENST00000267978		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000267978	ENST00000563539		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563539	ENST00000569482		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563539	ENST00000565683		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563539	ENST00000563622		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-3CDS	ENST00000563539	ENST00000267978		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000563539	ENST00000563539		ChiTaRS3.1			BE935269	MAN2C1	chr15	75652514	-	MAN2C1	chr15	75654033	-
intron-intron	ENST00000300853	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000300853	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000300853	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000399537		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000430969		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000399434		ChiTaRS3.1			BF853129	ERCC1	chr19	45976848	-	TNRC18	chr7	5394075	-
intron-3CDS	ENST00000538559	ENST00000357731		ChiTaRS3.1			BG193769	RMST	chr12	97871971	+	NEGR1	chr1	72163816	-
intron-3CDS	ENST00000538559	ENST00000306821		ChiTaRS3.1			BG193769	RMST	chr12	97871971	+	NEGR1	chr1	72163816	-
intron-intron	ENST00000538559	ENST00000434200		ChiTaRS3.1			BG193769	RMST	chr12	97871971	+	NEGR1	chr1	72163816	-
intron-5UTR	ENST00000538559	ENST00000467479		ChiTaRS3.1			BG193769	RMST	chr12	97871971	+	NEGR1	chr1	72163816	-
Frame-shit	ENST00000320672	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000320672	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000320672	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000320672	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
Frame-shit	ENST00000509053	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000509053	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000509053	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000509053	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
Frame-shit	ENST00000514493	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000514493	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000514493	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000514493	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
intron-3CDS	ENST00000510060	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
intron-intron	ENST00000510060	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
intron-intron	ENST00000510060	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
intron-intron	ENST00000510060	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
Frame-shit	ENST00000505980	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000505980	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000505980	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000505980	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
Frame-shit	ENST00000515395	ENST00000456556		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000515395	ENST00000420871		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000515395	ENST00000419039		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
5CDS-intron	ENST00000515395	ENST00000295246		ChiTaRS3.1			DR000829	SSBP2	chr5	80911292	-	ANKRD36C	chr2	96628295	-
intron-intron	ENST00000453134	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000453134	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000453134	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000453134	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000583458	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000583458	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000583458	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000583458	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000415831	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000415831	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000415831	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000415831	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000582043	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000582043	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000582043	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000582043	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000580155	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000580155	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000580155	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000580155	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000584778	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000584778	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000584778	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000584778	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000578887	ENST00000366574		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000578887	ENST00000360064		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000578887	ENST00000542537		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
intron-intron	ENST00000578887	ENST00000609119		ChiTaRS3.1			CR748559	RBFOX3	chr17	77111712	-	RYR2	chr1	237431970	-
5CDS-intron	ENST00000216146	ENST00000367568		ChiTaRS3.1			BF360749	RPL3	chr22	39710691	-	STX11	chr6	144483971	-
5UTR-intron	ENST00000465618	ENST00000367568		ChiTaRS3.1			BF360749	RPL3	chr22	39710691	-	STX11	chr6	144483971	-
5CDS-intron	ENST00000401609	ENST00000367568		ChiTaRS3.1			BF360749	RPL3	chr22	39710691	-	STX11	chr6	144483971	-
intron-intron	ENST00000366508	ENST00000366508		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000366508	ENST00000326225		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000366508	ENST00000391829		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000366508	ENST00000470300		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000326225	ENST00000366508		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000326225	ENST00000326225		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000326225	ENST00000391829		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000326225	ENST00000470300		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000391829	ENST00000366508		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000391829	ENST00000326225		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000391829	ENST00000391829		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000391829	ENST00000470300		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000470300	ENST00000366508		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000470300	ENST00000326225		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000470300	ENST00000391829		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-intron	ENST00000470300	ENST00000470300		ChiTaRS3.1			BM980459	AHCTF1	chr1	247086074	+	AHCTF1	chr5	68481477	+
intron-3CDS	ENST00000334801	ENST00000334801		ChiTaRS3.1			CA427919	BCL9L	chr11	118769006	+	BCL9L	chr11	118770164	-
intron-5UTR	ENST00000334801	ENST00000526143		ChiTaRS3.1			CA427919	BCL9L	chr11	118769006	+	BCL9L	chr11	118770164	-
intron-3CDS	ENST00000526143	ENST00000334801		ChiTaRS3.1			CA427919	BCL9L	chr11	118769006	+	BCL9L	chr11	118770164	-
intron-5UTR	ENST00000526143	ENST00000526143		ChiTaRS3.1			CA427919	BCL9L	chr11	118769006	+	BCL9L	chr11	118770164	-
intron-5UTR	ENST00000360797	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000360797	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000360797	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000360797	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000360797	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000360797	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000580830	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000580830	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000580830	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000580830	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000580830	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000580830	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000581345	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000581345	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000581345	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000581345	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000581345	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000581345	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000579882	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000579882	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000579882	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000579882	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000579882	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000579882	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000585100	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000585100	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000585100	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000585100	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000585100	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000585100	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000578109	ENST00000360797		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000578109	ENST00000580830		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000578109	ENST00000581345		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000578109	ENST00000579882		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000578109	ENST00000585100		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-5UTR	ENST00000578109	ENST00000578109		ChiTaRS3.1			BM850179	PCGF2	chr17	36894822	-	PCGF2	chr17	36904483	-
intron-intron	ENST00000254480	ENST00000609205		ChiTaRS3.1			BE179599	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-3UTR	ENST00000254480	ENST00000360270		ChiTaRS3.1			BE179599	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-intron	ENST00000425518	ENST00000609205		ChiTaRS3.1			BE179599	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-3UTR	ENST00000425518	ENST00000360270		ChiTaRS3.1			BE179599	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
3UTR-intron	ENST00000325881	ENST00000396364		ChiTaRS3.1			BF752849	SNX22	chr15	64448323	+	FXN	chr9	71679561	-
3UTR-intron	ENST00000325881	ENST00000377270		ChiTaRS3.1			BF752849	SNX22	chr15	64448323	+	FXN	chr9	71679561	-
3UTR-intron	ENST00000325881	ENST00000396366		ChiTaRS3.1			BF752849	SNX22	chr15	64448323	+	FXN	chr9	71679561	-
3UTR-intron	ENST00000325881	ENST00000498653		ChiTaRS3.1			BF752849	SNX22	chr15	64448323	+	FXN	chr9	71679561	-
intron-3CDS	ENST00000539068	ENST00000539068		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000539068	ENST00000536438		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000539068	ENST00000357266		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000539068	ENST00000540787		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-intron	ENST00000539068	ENST00000542713		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000536438	ENST00000539068		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000536438	ENST00000536438		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000536438	ENST00000357266		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000536438	ENST00000540787		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-intron	ENST00000536438	ENST00000542713		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000357266	ENST00000539068		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000357266	ENST00000536438		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000357266	ENST00000357266		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000357266	ENST00000540787		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-intron	ENST00000357266	ENST00000542713		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000540787	ENST00000539068		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000540787	ENST00000536438		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000540787	ENST00000357266		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000540787	ENST00000540787		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-intron	ENST00000540787	ENST00000542713		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000542713	ENST00000539068		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000542713	ENST00000536438		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000542713	ENST00000357266		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3CDS	ENST00000542713	ENST00000540787		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-intron	ENST00000542713	ENST00000542713		ChiTaRS3.1			BG960579	FKBP5	chr6	35565123	-	FKBP5	chr6	35544960	+
intron-3UTR	ENST00000373865	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373855	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000238341	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373850	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
5CDS-3UTR	ENST00000373847	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373845	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000373844	ENST00000534336		ChiTaRS3.1			DW449199	CNTRL	chr9	123904388	+	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000353088	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000353088	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000353088	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000353088	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000353088	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000353088	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000476071	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000476071	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000476071	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000476071	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000476071	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000476071	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000216879	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000216879	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000216879	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000216879	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000216879	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000216879	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000381658	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000381658	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000381658	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000381658	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000381658	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000381658	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000350991	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000350991	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000350991	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000350991	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000350991	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000350991	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000461211	ENST00000353088		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000461211	ENST00000476071		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000461211	ENST00000216879		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-3UTR	ENST00000461211	ENST00000381658		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-intron	ENST00000461211	ENST00000350991		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
intron-5UTR	ENST00000461211	ENST00000461211		ChiTaRS3.1			AV749909	NSFL1C	chr20	1424299	+	NSFL1C	chr20	1423412	+
5CDS-intron	ENST00000339976	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000339976	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000339976	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000339976	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000339976	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000004980	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000004980	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000004980	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000004980	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000004980	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000448372	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000448372	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000448372	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000448372	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000448372	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000551330	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000551330	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000551330	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000551330	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000551330	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549518	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549518	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549518	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549518	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000549518	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549595	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549595	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-intron	ENST00000549595	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-5UTR	ENST00000549595	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
5CDS-3UTR	ENST00000549595	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-intron	ENST00000547886	ENST00000355192		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-5UTR	ENST00000547886	ENST00000308259		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-intron	ENST00000547886	ENST00000540804		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-5UTR	ENST00000547886	ENST00000535664		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
intron-3UTR	ENST00000547886	ENST00000538725		ChiTaRS3.1			BU785369	SENP1	chr12	48495252	-	MSRB3	chr12	65702308	+
3UTR-3UTR	ENST00000379719	ENST00000379719		ChiTaRS3.1			CA312459	IPO7	chr11	9469580	-	IPO7	chr11	9468776	+
3UTR-intron	ENST00000379719	ENST00000533680		ChiTaRS3.1			CA312459	IPO7	chr11	9469580	-	IPO7	chr11	9468776	+
intron-3UTR	ENST00000533680	ENST00000379719		ChiTaRS3.1			CA312459	IPO7	chr11	9469580	-	IPO7	chr11	9468776	+
intron-intron	ENST00000533680	ENST00000533680		ChiTaRS3.1			CA312459	IPO7	chr11	9469580	-	IPO7	chr11	9468776	+
intron-3UTR	ENST00000225388	ENST00000225388		ChiTaRS3.1			DW437789	NUFIP2	chr17	27587737	-	NUFIP2	chr17	27589219	-
intron-intron	ENST00000225388	ENST00000579665		ChiTaRS3.1			DW437789	NUFIP2	chr17	27587737	-	NUFIP2	chr17	27589219	-
intron-3UTR	ENST00000579665	ENST00000225388		ChiTaRS3.1			DW437789	NUFIP2	chr17	27587737	-	NUFIP2	chr17	27589219	-
intron-intron	ENST00000579665	ENST00000579665		ChiTaRS3.1			DW437789	NUFIP2	chr17	27587737	-	NUFIP2	chr17	27589219	-
3UTR-intron	ENST00000536814	ENST00000553221		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000536814	ENST00000257910		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-3UTR	ENST00000536814	ENST00000547992		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000536814	ENST00000547472		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000439118	ENST00000553221		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000439118	ENST00000257910		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-3UTR	ENST00000439118	ENST00000547992		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000439118	ENST00000547472		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000361124	ENST00000553221		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000361124	ENST00000257910		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-3UTR	ENST00000361124	ENST00000547992		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000361124	ENST00000547472		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000542887	ENST00000553221		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000542887	ENST00000257910		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-3UTR	ENST00000542887	ENST00000547992		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
3UTR-intron	ENST00000542887	ENST00000547472		ChiTaRS3.1			AW118879	ITPRIPL1	chr2	96994041	-	TSPAN31	chr12	58142026	-
In-frame	ENST00000332050	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332050	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332050	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332050	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332050	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000332050	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000332050	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000397938	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000397938	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000397938	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000397938	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000397938	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000397938	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000397938	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000406548	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000406548	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000406548	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000406548	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000406548	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000406548	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000406548	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000331029	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000331029	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000331029	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000331029	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000331029	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000331029	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000331029	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000414183	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000414183	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000414183	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000414183	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000414183	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000414183	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000414183	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-3CDS	ENST00000333395	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-3CDS	ENST00000333395	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-3CDS	ENST00000333395	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-3CDS	ENST00000333395	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-3CDS	ENST00000333395	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-intron	ENST00000333395	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-intron	ENST00000333395	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332035	ENST00000332050		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332035	ENST00000397938		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332035	ENST00000406548		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332035	ENST00000331029		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
In-frame	ENST00000332035	ENST00000414183		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000332035	ENST00000333395		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
5CDS-intron	ENST00000332035	ENST00000332035		ChiTaRS3.1			AW983579	EWSR1	chr22	29688590	+	EWSR1	chr22	29692252	-
intron-intron	ENST00000490506	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000490506	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000206474	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000554446	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000541587	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000397409	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000342454	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000347758	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555367	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000393772		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000379308		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000379306		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000379305		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000436908		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000313221		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000456695		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000455112		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000555986	ENST00000471074		ChiTaRS3.1			N20469	HAUS4	chr14	23424193	-	FBXL13	chr7	102464622	+
intron-intron	ENST00000431677	ENST00000354179		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000431677	ENST00000439151		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000431677	ENST00000347982		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000431677	ENST00000361032		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000431677	ENST00000511258		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000423738	ENST00000354179		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000423738	ENST00000439151		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000423738	ENST00000347982		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000423738	ENST00000361032		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-intron	ENST00000423738	ENST00000511258		ChiTaRS3.1			BE173509	ARMCX4	chrX	100707798	-	NSD1	chr5	176569434	+
intron-3CDS	ENST00000540235	ENST00000216294		ChiTaRS3.1			BF836089	JUP	chr17	39766414	+	SNAPC1	chr14	62229212	+
intron-3CDS	ENST00000393930	ENST00000216294		ChiTaRS3.1			BF836089	JUP	chr17	39766414	+	SNAPC1	chr14	62229212	+
intron-3CDS	ENST00000393931	ENST00000216294		ChiTaRS3.1			BF836089	JUP	chr17	39766414	+	SNAPC1	chr14	62229212	+
intron-3CDS	ENST00000310706	ENST00000216294		ChiTaRS3.1			BF836089	JUP	chr17	39766414	+	SNAPC1	chr14	62229212	+
intron-3CDS	ENST00000343638	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000343638	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000343638	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000302904	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000302904	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000527034	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000527034	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000533177	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000533177	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000436088	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000436088	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000393606	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000393606	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000529383	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000529383	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000526094	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000526094	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000343638		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000302904		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000527034		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000533177		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000436088		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000393606		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000529383		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-3CDS	ENST00000537550	ENST00000526094		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000537550	ENST00000537550		ChiTaRS3.1			EC563459	UBTF	chr17	42293117	+	UBTF	chr17	42290598	-
intron-intron	ENST00000373062	ENST00000425013		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
intron-intron	ENST00000373062	ENST00000389902		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
intron-intron	ENST00000373062	ENST00000469375		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
intron-intron	ENST00000462812	ENST00000425013		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
intron-intron	ENST00000462812	ENST00000389902		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
intron-intron	ENST00000462812	ENST00000469375		ChiTaRS3.1			BP249749	GNL2	chr1	38056400	-	RNF216	chr7	5704463	-
3UTR-5UTR	ENST00000534336	ENST00000251595		ChiTaRS3.1			H58889	MALAT1	chr11	65268065	-	HBA2	chr16	222888	+
3UTR-5UTR	ENST00000534336	ENST00000397806		ChiTaRS3.1			H58889	MALAT1	chr11	65268065	-	HBA2	chr16	222888	+
intron-intron	ENST00000396373	ENST00000344691		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000325074		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000437180		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000300305		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000399240		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000486278		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000494829		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000396373	ENST00000358356		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000344691		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000325074		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000437180		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000300305		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000399240		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000486278		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000494829		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
intron-intron	ENST00000544715	ENST00000358356		ChiTaRS3.1			AJ494736	ETV6	chr12	12036849	+	RUNX1	chr21	36281179	-
Frame-shit	ENST00000527985	ENST00000527985		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000527985	ENST00000287169		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
5CDS-intron	ENST00000527985	ENST00000527090		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000287169	ENST00000527985		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
Frame-shit	ENST00000287169	ENST00000287169		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
5CDS-intron	ENST00000287169	ENST00000527090		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-3CDS	ENST00000527090	ENST00000527985		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-3CDS	ENST00000527090	ENST00000287169		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-intron	ENST00000527090	ENST00000527090		ChiTaRS3.1			AA442059	ZDHHC5	chr11	57467414	+	ZDHHC5	chr11	57466282	+
intron-intron	ENST00000262613	ENST00000262613		ChiTaRS3.1			AW888429	SLC9A3R1	chr17	72751568	-	SLC9A3R1	chr17	72754320	-
intron-intron	ENST00000262613	ENST00000413388		ChiTaRS3.1			AW888429	SLC9A3R1	chr17	72751568	-	SLC9A3R1	chr17	72754320	-
intron-intron	ENST00000413388	ENST00000262613		ChiTaRS3.1			AW888429	SLC9A3R1	chr17	72751568	-	SLC9A3R1	chr17	72754320	-
intron-intron	ENST00000413388	ENST00000413388		ChiTaRS3.1			AW888429	SLC9A3R1	chr17	72751568	-	SLC9A3R1	chr17	72754320	-
intron-3CDS	ENST00000541515	ENST00000541515		ChiTaRS3.1			DA687959	LUC7L2	chr7	139104198	+	LUC7L2	chr7	139094352	+
intron-intron	ENST00000519301	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000519301	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000520407	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000520407	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000523079	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000523079	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000338921	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000338921	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000356819	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000356819	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000287845	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000287845	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000341377	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000341377	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000287842	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000287842	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000521670	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000521670	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000405005	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000405005	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000520502	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000520502	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000539990	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000539990	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000523681	ENST00000448841		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000523681	ENST00000369889		ChiTaRS3.1			AB073889	NRG1	chr8	32160440	+	WBP1L	chr10	104523813	+
intron-intron	ENST00000324589	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000324589	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000324589	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000324589	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000324589	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000324589	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000349752	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000406653	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000356174	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000420311	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000324589		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000349752		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000406653		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000356174		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000420311		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
intron-intron	ENST00000486564	ENST00000486564		ChiTaRS3.1			CF143349	GALNT14	chr2	31277907	-	GALNT14	chr2	31282926	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW976079	MALAT1	chr11	65267411	-	MALAT1	chr11	65267994	-
intron-intron	ENST00000328205	ENST00000419197		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000328205	ENST00000526888		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-3UTR	ENST00000328205	ENST00000527958		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000328205	ENST00000529887		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000328205	ENST00000530272		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000366801	ENST00000419197		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000366801	ENST00000526888		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-3UTR	ENST00000366801	ENST00000527958		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000366801	ENST00000529887		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000366801	ENST00000530272		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000481685	ENST00000419197		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000481685	ENST00000526888		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-3UTR	ENST00000481685	ENST00000527958		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000481685	ENST00000529887		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-intron	ENST00000481685	ENST00000530272		ChiTaRS3.1			AA318969	LIN9	chr1	226453685	-	PAFAH1B2	chr11	117039777	+
intron-3CDS	ENST00000458497	ENST00000358232		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000458497	ENST00000351393		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000458497	ENST00000442325		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000458497	ENST00000423854		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000458497	ENST00000350494		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000458497	ENST00000542824		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-intron	ENST00000458497	ENST00000542050		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000358232		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000351393		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000442325		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000423854		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000350494		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000177648	ENST00000542824		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-intron	ENST00000177648	ENST00000542050		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000358232		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000351393		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000442325		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000423854		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000350494		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000504176	ENST00000542824		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-intron	ENST00000504176	ENST00000542050		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000358232		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000351393		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000442325		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000423854		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000350494		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3CDS	ENST00000505912	ENST00000542824		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-intron	ENST00000505912	ENST00000542050		ChiTaRS3.1			BQ359089	ALPK1	chr4	113252491	+	ELP2	chr18	33739945	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835149	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3CDS	ENST00000372491	ENST00000373001		ChiTaRS3.1			BG336879	IER5L	chr9	131940358	-	RRAGC	chr1	39325210	-
intron-intron	ENST00000372491	ENST00000474456		ChiTaRS3.1			BG336879	IER5L	chr9	131940358	-	RRAGC	chr1	39325210	-
intron-intron	ENST00000381196	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000381196	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000360074	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000537002	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397617	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000358503	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397611	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000355233	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000356435	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000540109	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000486161	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000397606	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000463477	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000397707		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000560611		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000354181		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000458406		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000397702		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000290209		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000558667		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000558589		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000451844		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
intron-intron	ENST00000471274	ENST00000560164		ChiTaRS3.1			BU853869	PTPRD	chr9	9129258	+	SLC12A6	chr15	34619749	-
3UTR-3UTR	ENST00000368926	ENST00000439374		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
3UTR-3UTR	ENST00000368926	ENST00000540998		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
3UTR-3UTR	ENST00000368926	ENST00000357235		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
3UTR-intron	ENST00000368926	ENST00000492796		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
intron-3UTR	ENST00000465135	ENST00000439374		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
intron-3UTR	ENST00000465135	ENST00000540998		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
intron-3UTR	ENST00000465135	ENST00000357235		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
intron-intron	ENST00000465135	ENST00000492796		ChiTaRS3.1			AI741399	C1orf56	chr1	151023696	-	CDC42SE1	chr1	151023917	+
intron-3CDS	ENST00000514529	ENST00000380358		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000358181		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000330494		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000514529	ENST00000570758		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000321871	ENST00000380358		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000358181		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000330494		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000321871	ENST00000570758		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000393130	ENST00000380358		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000358181		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000330494		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000393130	ENST00000570758		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000508711	ENST00000380358		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000358181		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000330494		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000508711	ENST00000570758		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-3CDS	ENST00000515826	ENST00000380358		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000358181		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000330494		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000515826	ENST00000570758		ChiTaRS3.1			AF064839	TMEM108	chr3	132790259	+	CHD3	chr17	7788214	+
intron-intron	ENST00000337532	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000337532	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000337532	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375732	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375732	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375732	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000540098	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000540098	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000540098	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375719	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375719	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000375719	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000445954	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000445954	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000445954	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000481244	ENST00000323060		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000481244	ENST00000263275		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
intron-intron	ENST00000481244	ENST00000544371		ChiTaRS3.1			BF926389	MPP7	chr10	28363721	+	OPA3	chr19	46057688	+
In-frame	ENST00000533760	ENST00000533760		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000533760	ENST00000397957		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000533760	ENST00000316851		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-intron	ENST00000533760	ENST00000401611		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
3UTR-3CDS	ENST00000397957	ENST00000533760		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
3UTR-3UTR	ENST00000397957	ENST00000397957		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
3UTR-3UTR	ENST00000397957	ENST00000316851		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
3UTR-intron	ENST00000397957	ENST00000401611		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
In-frame	ENST00000316851	ENST00000533760		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000316851	ENST00000397957		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-3UTR	ENST00000316851	ENST00000316851		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
5CDS-intron	ENST00000316851	ENST00000401611		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
intron-3CDS	ENST00000401611	ENST00000533760		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
intron-3UTR	ENST00000401611	ENST00000397957		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
intron-3UTR	ENST00000401611	ENST00000316851		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
intron-intron	ENST00000401611	ENST00000401611		ChiTaRS3.1			W26619	NCAM1	chr11	113126660	-	NCAM1	chr11	113130891	+
intron-intron	ENST00000382199	ENST00000307439		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000382199	ENST00000342081		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000382199	ENST00000395777		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000382199	ENST00000335049		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000382199	ENST00000512591		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000421047	ENST00000307439		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000421047	ENST00000342081		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000421047	ENST00000395777		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000421047	ENST00000335049		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000421047	ENST00000512591		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000457616	ENST00000307439		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000457616	ENST00000342081		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000457616	ENST00000395777		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000457616	ENST00000335049		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000457616	ENST00000512591		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000346192	ENST00000307439		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000346192	ENST00000342081		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000346192	ENST00000395777		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000346192	ENST00000335049		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000346192	ENST00000512591		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000494906	ENST00000307439		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000494906	ENST00000342081		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000494906	ENST00000395777		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000494906	ENST00000335049		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
intron-intron	ENST00000494906	ENST00000512591		ChiTaRS3.1			BQ353349	IGF2BP2	chr3	185508010	-	RASSF6	chr4	74449093	+
3UTR-3CDS	ENST00000515359	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000515359	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000515359	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000515359	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000515359	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000515359	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000515359	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000308775	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000308775	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000541308	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000541308	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000539901	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000539901	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000545947	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000545947	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-3CDS	ENST00000538711	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
3UTR-intron	ENST00000538711	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000515359		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000308775		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000541308		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000539901		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000545947		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-3CDS	ENST00000479935	ENST00000538711		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
intron-intron	ENST00000479935	ENST00000479935		ChiTaRS3.1			AA348169	DAG1	chr3	49572140	+	DAG1	chr3	49570620	+
Frame-shit	ENST00000371657	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
5UTR-3CDS	ENST00000396059	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
Frame-shit	ENST00000371674	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
intron-3CDS	ENST00000371677	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
intron-3CDS	ENST00000340309	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
intron-3CDS	ENST00000420027	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
intron-3CDS	ENST00000415862	ENST00000244061		ChiTaRS3.1			BM019459	UBE2V1	chr20	48729644	-	RNF114	chr20	48558097	+
5UTR-3CDS	ENST00000393799	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393799	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393799	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-3CDS	ENST00000530427	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
3UTR-intron	ENST00000530427	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393800	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393800	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000534534	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000534534	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524845	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524845	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265637	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265637	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000524904	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000524904	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000393801	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000393801	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000265636	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000265636	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-3CDS	ENST00000529710	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
5UTR-intron	ENST00000529710	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000531863		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000532677		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000453114		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000360510		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000541961		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-3CDS	ENST00000527403	ENST00000530165		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
intron-intron	ENST00000527403	ENST00000533799		ChiTaRS3.1			DA723279	PPP6R3	chr11	68228297	+	DPP3	chr11	66272080	+
Frame-shit	ENST00000375472	ENST00000375472		ChiTaRS3.1			BQ049919	SUSD3	chr9	95840181	-	SUSD3	chr9	95840220	+
Frame-shit	ENST00000375472	ENST00000375469		ChiTaRS3.1			BQ049919	SUSD3	chr9	95840181	-	SUSD3	chr9	95840220	+
Frame-shit	ENST00000375469	ENST00000375472		ChiTaRS3.1			BQ049919	SUSD3	chr9	95840181	-	SUSD3	chr9	95840220	+
Frame-shit	ENST00000375469	ENST00000375469		ChiTaRS3.1			BQ049919	SUSD3	chr9	95840181	-	SUSD3	chr9	95840220	+
In-frame	ENST00000263733	ENST00000455114		ChiTaRS3.1			AW379529	FAM20B	chr1	179013033	-	PRSS21	chr16	2868797	-
In-frame	ENST00000263733	ENST00000450020		ChiTaRS3.1			AW379529	FAM20B	chr1	179013033	-	PRSS21	chr16	2868797	-
In-frame	ENST00000263733	ENST00000005995		ChiTaRS3.1			AW379529	FAM20B	chr1	179013033	-	PRSS21	chr16	2868797	-
5CDS-intron	ENST00000263733	ENST00000575739		ChiTaRS3.1			AW379529	FAM20B	chr1	179013033	-	PRSS21	chr16	2868797	-
3UTR-3UTR	ENST00000543796	ENST00000377795		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000543796	ENST00000353334		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000543796	ENST00000524315		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-intron	ENST00000543796	ENST00000009530		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000541630	ENST00000377795		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000541630	ENST00000353334		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000541630	ENST00000524315		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-intron	ENST00000541630	ENST00000009530		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000392369	ENST00000377795		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000392369	ENST00000353334		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000392369	ENST00000524315		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-intron	ENST00000392369	ENST00000009530		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000254675	ENST00000377795		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000254675	ENST00000353334		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-3UTR	ENST00000254675	ENST00000524315		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
3UTR-intron	ENST00000254675	ENST00000009530		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
intron-3UTR	ENST00000392367	ENST00000377795		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
intron-3UTR	ENST00000392367	ENST00000353334		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
intron-3UTR	ENST00000392367	ENST00000524315		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
intron-intron	ENST00000392367	ENST00000009530		ChiTaRS3.1			BX456619	RAN	chr12	131360564	-	CD74	chr5	149781555	-
intron-intron	ENST00000452400	ENST00000254667		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000452400	ENST00000419012		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000452400	ENST00000430713		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000452400	ENST00000471218		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000452400	ENST00000306042		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000267974	ENST00000254667		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000267974	ENST00000419012		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000267974	ENST00000430713		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000267974	ENST00000471218		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000267974	ENST00000306042		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000524223	ENST00000254667		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000524223	ENST00000419012		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000524223	ENST00000430713		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000524223	ENST00000471218		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000524223	ENST00000306042		ChiTaRS3.1			BE009179	NCOA2	chr8	71110761	+	PTPRE	chr10	129789864	-
intron-intron	ENST00000356206	ENST00000356206		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000356206	ENST00000521321		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000356206	ENST00000358689		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000356206	ENST00000417069		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000521321	ENST00000356206		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000521321	ENST00000521321		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000521321	ENST00000358689		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000521321	ENST00000417069		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000358689	ENST00000356206		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000358689	ENST00000521321		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000358689	ENST00000358689		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000358689	ENST00000417069		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000417069	ENST00000356206		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000417069	ENST00000521321		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000417069	ENST00000358689		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000417069	ENST00000417069		ChiTaRS3.1			BI001449	ENTPD4	chr8	23293935	+	ENTPD4	chr8	23293503	-
intron-intron	ENST00000548241	ENST00000417172		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000361388		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000422748		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000361675		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000361901		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000393118		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000495522		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000424922		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000543443		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
intron-intron	ENST00000548241	ENST00000466704		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000417172		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000361388		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000422748		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000361675		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000361901		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000393118		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000495522		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000424922		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000543443		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
5CDS-intron	ENST00000267116	ENST00000466704		ChiTaRS3.1			AK098479	ANKRD52	chr12	56647854	-	CALD1	chr7	134610790	+
Frame-shit	ENST00000375114	ENST00000375114		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
Frame-shit	ENST00000375114	ENST00000246194		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
5CDS-intron	ENST00000375114	ENST00000493399		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
Frame-shit	ENST00000246194	ENST00000375114		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
Frame-shit	ENST00000246194	ENST00000246194		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
5CDS-intron	ENST00000246194	ENST00000493399		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
3UTR-3CDS	ENST00000493399	ENST00000375114		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
3UTR-3CDS	ENST00000493399	ENST00000246194		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
3UTR-intron	ENST00000493399	ENST00000493399		ChiTaRS3.1			BI836639	RALY	chr20	32659993	-	RALY	chr20	32660066	+
intron-intron	ENST00000560302	ENST00000452400		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000560302	ENST00000267974		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000560302	ENST00000524223		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394518	ENST00000452400		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394518	ENST00000267974		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394518	ENST00000524223		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000361243	ENST00000452400		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000361243	ENST00000267974		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000361243	ENST00000524223		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000560579	ENST00000452400		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000560579	ENST00000267974		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000560579	ENST00000524223		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394510	ENST00000452400		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394510	ENST00000267974		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-intron	ENST00000394510	ENST00000524223		ChiTaRS3.1			BF379189	AKAP13	chr15	85959552	-	NCOA2	chr8	71246232	+
intron-5UTR	ENST00000382582	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000382582	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000382582	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000382582	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000382582	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000382582	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000355994	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000355994	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000355994	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000355994	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000355994	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000355994	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397875	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397875	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397875	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397875	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397875	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397875	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397866	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397866	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397866	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397866	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397866	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397866	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397865	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397865	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397865	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397865	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397865	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397865	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000527041	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000527041	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000527041	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000527041	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000527041	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000527041	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000359645	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000359645	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000359645	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000359645	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000359645	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000359645	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000528160	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000528160	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000528160	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000528160	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000528160	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000528160	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397869	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397869	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397869	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397869	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397869	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397869	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000354542	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000354542	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000354542	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000354542	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000354542	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000354542	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000526111	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000526111	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000526111	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000526111	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000526111	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000526111	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000580402	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000580402	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000580402	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000580402	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000580402	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000580402	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000579129	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000579129	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000579129	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000579129	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000579129	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000579129	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000578193	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000578193	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000578193	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000578193	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000578193	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000578193	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397863	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397863	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397863	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397863	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397863	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397863	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000397860	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397860	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397860	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000397860	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397860	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000397860	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-5UTR	ENST00000487778	ENST00000380121		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000487778	ENST00000504114		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000487778	ENST00000357505		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-3UTR	ENST00000487778	ENST00000399396		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000487778	ENST00000446957		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000487778	ENST00000267068		ChiTaRS3.1			DB312529	MBP	chr18	74691001	+	N4BP2L2	chr13	33006968	+
intron-intron	ENST00000288670	ENST00000359660		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000288670	ENST00000542267		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000288670	ENST00000496714		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000475377	ENST00000359660		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000475377	ENST00000542267		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000475377	ENST00000496714		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000497192	ENST00000359660		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000497192	ENST00000542267		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000497192	ENST00000496714		ChiTaRS3.1			BF993349	FMNL2	chr2	153220766	-	FBXL17	chr5	107296943	-
intron-intron	ENST00000229379	ENST00000322313		ChiTaRS3.1			BG957239	COX6A1	chr12	120876185	-	WDR33	chr2	128506388	-
intron-intron	ENST00000229379	ENST00000393006		ChiTaRS3.1			BG957239	COX6A1	chr12	120876185	-	WDR33	chr2	128506388	-
intron-intron	ENST00000229379	ENST00000409658		ChiTaRS3.1			BG957239	COX6A1	chr12	120876185	-	WDR33	chr2	128506388	-
intron-3CDS	ENST00000488834	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000488834	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000488834	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000474597	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000474597	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000474597	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000244763	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000244763	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000244763	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000397511	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000397511	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000397511	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000534851	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000534851	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000534851	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000489567	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000489567	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000489567	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000479365	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000479365	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000479365	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000462112	ENST00000296051		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-3CDS	ENST00000462112	ENST00000460120		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
intron-intron	ENST00000462112	ENST00000494327		ChiTaRS3.1			BE936569	SSR1	chr6	7298853	-	HPS3	chr3	148889926	-
3UTR-3CDS	ENST00000380320	ENST00000380320		ChiTaRS3.1			BF514389	EMILIN1	chr2	27309027	-	EMILIN1	chr2	27308027	+
intron-intron	ENST00000361377	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000361377	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000396954	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000396954	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000450852	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000450852	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000510818	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000510818	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000508922	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000508922	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000582677	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000582677	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000584946	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000584946	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000527216	ENST00000413482		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000527216	ENST00000272847		ChiTaRS3.1			AA659769	MOCS2	chr5	52402591	+	PTH2R	chr2	209382881	+
intron-intron	ENST00000565698	ENST00000281741		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000565698	ENST00000554399		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000304658	ENST00000281741		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000304658	ENST00000554399		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000561488	ENST00000281741		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000561488	ENST00000554399		ChiTaRS3.1			BE162529	XPO6	chr16	28110256	+	TXNDC16	chr14	52959179	+
intron-intron	ENST00000434600	ENST00000264433		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000434600	ENST00000379346		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000434600	ENST00000505445		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000538785	ENST00000264433		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000538785	ENST00000379346		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000538785	ENST00000505445		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000200639	ENST00000264433		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000200639	ENST00000379346		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000200639	ENST00000505445		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000371335	ENST00000264433		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000371335	ENST00000379346		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000371335	ENST00000505445		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000540603	ENST00000264433		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000540603	ENST00000379346		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-intron	ENST00000540603	ENST00000505445		ChiTaRS3.1			BF989399	LAMP2	chrX	119565109	-	FNIP2	chr4	159772831	+
intron-3CDS	ENST00000310454	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000310454	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000310454	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000310454	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000409125	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000409125	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000409125	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000409125	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000438166	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000438166	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000438166	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000438166	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000540309	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000540309	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000540309	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000540309	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000409674	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000409674	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000409674	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000409674	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000496190	ENST00000448150		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-3CDS	ENST00000496190	ENST00000367649		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000496190	ENST00000465723		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
intron-intron	ENST00000496190	ENST00000462775		ChiTaRS3.1			BE815959	GPD2	chr2	157336335	-	RASAL2	chr1	178412304	+
3UTR-3UTR	ENST00000262375	ENST00000262375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-3UTR	ENST00000262375	ENST00000355296		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-3UTR	ENST00000262375	ENST00000431375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-intron	ENST00000262375	ENST00000572139		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-3UTR	ENST00000355296	ENST00000262375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-3UTR	ENST00000355296	ENST00000355296		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-3UTR	ENST00000355296	ENST00000431375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
3UTR-intron	ENST00000355296	ENST00000572139		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000431375	ENST00000262375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000431375	ENST00000355296		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000431375	ENST00000431375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-intron	ENST00000431375	ENST00000572139		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000572139	ENST00000262375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000572139	ENST00000355296		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-3UTR	ENST00000572139	ENST00000431375		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-intron	ENST00000572139	ENST00000572139		ChiTaRS3.1			AA913729	DNAJA3	chr16	4506565	-	DNAJA3	chr16	4505590	+
intron-5UTR	ENST00000264993	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000264993	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000264993	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000431519	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000431519	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000508481	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000508481	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000420115	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000420115	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000511392	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000511392	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000382582		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000355994		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397875		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397866		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397865		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000527041		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-intron	ENST00000515421	ENST00000359645		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000528160		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397869		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000354542		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000526111		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000580402		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000579129		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000578193		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397863		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000397860		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-5UTR	ENST00000515421	ENST00000487778		ChiTaRS3.1			DA349409	CDV3	chr3	133297269	+	MBP	chr18	74729011	-
intron-3CDS	ENST00000478553	ENST00000374005		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-3CDS	ENST00000478553	ENST00000399173		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000478553	ENST00000545953		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000478553	ENST00000374004		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000478553	ENST00000468038		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-3CDS	ENST00000379400	ENST00000374005		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-3CDS	ENST00000379400	ENST00000399173		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379400	ENST00000545953		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379400	ENST00000374004		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379400	ENST00000468038		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-3CDS	ENST00000379376	ENST00000374005		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-3CDS	ENST00000379376	ENST00000399173		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379376	ENST00000545953		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379376	ENST00000374004		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
intron-intron	ENST00000379376	ENST00000468038		ChiTaRS3.1			BE831579	RASSF2	chr20	4766974	+	FGR	chr1	27948095	+
Frame-shit	ENST00000337002	ENST00000337002		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
Frame-shit	ENST00000337002	ENST00000480708		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
5CDS-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
Frame-shit	ENST00000480708	ENST00000337002		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
Frame-shit	ENST00000480708	ENST00000480708		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
5CDS-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
intron-3CDS	ENST00000470355	ENST00000337002		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
intron-3CDS	ENST00000470355	ENST00000480708		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
intron-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			CB250599	SEC62	chr3	169694789	-	SEC62	chr3	169710761	-
Frame-shit	ENST00000013125	ENST00000013125		ChiTaRS3.1			BF956949	MAP4K5	chr14	50929382	-	MAP4K5	chr14	50952914	-
5CDS-intron	ENST00000013125	ENST00000557578		ChiTaRS3.1			BF956949	MAP4K5	chr14	50929382	-	MAP4K5	chr14	50952914	-
intron-3CDS	ENST00000557578	ENST00000013125		ChiTaRS3.1			BF956949	MAP4K5	chr14	50929382	-	MAP4K5	chr14	50952914	-
intron-intron	ENST00000557578	ENST00000557578		ChiTaRS3.1			BF956949	MAP4K5	chr14	50929382	-	MAP4K5	chr14	50952914	-
5CDS-intron	ENST00000395135	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000395135	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000395132	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000395132	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000268059	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000268059	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000354026	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000354026	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000268058	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000268058	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000565898	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000565898	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000569477	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000569477	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000569965	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000569965	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000567543	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000567543	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000435786	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000435786	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000436891	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000436891	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000564428	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000564428	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000359928	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000359928	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000563500	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
5CDS-intron	ENST00000563500	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000569161	ENST00000395468		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
intron-intron	ENST00000569161	ENST00000554364		ChiTaRS3.1			AF388193	PML	chr15	74325605	+	MAPK1IP1L	chr14	55524758	-
3UTR-intron	ENST00000372969	ENST00000372969		ChiTaRS3.1			AK223309	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372969	ENST00000372967		ChiTaRS3.1			AK223309	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372969		ChiTaRS3.1			AK223309	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
3UTR-intron	ENST00000372967	ENST00000372967		ChiTaRS3.1			AK223309	NDUFS5	chr1	39500253	+	NDUFS5	chrX	153626718	+
5CDS-3UTR	ENST00000258484	ENST00000396671		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
5CDS-3UTR	ENST00000258484	ENST00000356447		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
5CDS-intron	ENST00000258484	ENST00000416420		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
5CDS-intron	ENST00000258484	ENST00000280696		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
intron-3UTR	ENST00000409654	ENST00000396671		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
intron-3UTR	ENST00000409654	ENST00000356447		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
intron-intron	ENST00000409654	ENST00000416420		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
intron-intron	ENST00000409654	ENST00000280696		ChiTaRS3.1			BE836639	EPC2	chr2	149528720	-	THRB	chr3	24163438	+
intron-3CDS	ENST00000202677	ENST00000351266		ChiTaRS3.1			BI032749	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000202677	ENST00000378980		ChiTaRS3.1			BI032749	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000495793	ENST00000351266		ChiTaRS3.1			BI032749	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000495793	ENST00000378980		ChiTaRS3.1			BI032749	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-intron	ENST00000302516	ENST00000573169		ChiTaRS3.1			BE706779	SF3B3	chr16	70582572	-	NUP88	chr17	5319833	+
intron-intron	ENST00000302516	ENST00000573584		ChiTaRS3.1			BE706779	SF3B3	chr16	70582572	-	NUP88	chr17	5319833	+
intron-5UTR	ENST00000402714	ENST00000591471		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000589218		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000402714	ENST00000544914		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000591417		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000592168		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000392153		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000589392		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000324411		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000591259		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000541583		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000591134		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000402714	ENST00000586897		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000544450	ENST00000591471		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000589218		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000544450	ENST00000544914		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000591417		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000592168		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000392153		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000589392		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000324411		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000591259		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000541583		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000591134		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000544450	ENST00000586897		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000392920	ENST00000591471		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000589218		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000392920	ENST00000544914		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000591417		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000592168		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000392153		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000589392		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000324411		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000591259		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000541583		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000591134		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000392920	ENST00000586897		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000555048	ENST00000591471		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000589218		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-5UTR	ENST00000555048	ENST00000544914		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000591417		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000592168		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000392153		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000589392		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000324411		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000591259		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000541583		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000591134		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-intron	ENST00000555048	ENST00000586897		ChiTaRS3.1			BQ327689	EVL	chr14	100575068	+	HKR1	chr19	37853507	-
intron-3CDS	ENST00000356093	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000356093	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000356093	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000356093	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000356093	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000356093	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000356093	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000356093	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000356093	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000398863	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000398863	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000398863	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000398863	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000398863	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000398863	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000398863	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000398863	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000398863	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000343067	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000343067	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000343067	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000343067	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000343067	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000343067	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000343067	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000343067	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000343067	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000349460	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000349460	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000349460	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000349460	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000349460	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000349460	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000349460	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000349460	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000349460	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373800	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373800	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373800	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373800	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373800	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373800	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373800	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373800	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000373800	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000347529	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000347529	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000347529	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000347529	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000347529	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000347529	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000347529	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000347529	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000347529	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373798	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373798	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000373798	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373798	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373798	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373798	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373798	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000373798	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000373798	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-3CDS	ENST00000373797	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-3CDS	ENST00000373797	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-3CDS	ENST00000373797	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-5UTR	ENST00000373797	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-5UTR	ENST00000373797	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-5UTR	ENST00000373797	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-5UTR	ENST00000373797	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-5UTR	ENST00000373797	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
5UTR-intron	ENST00000373797	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000460378	ENST00000356093		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000460378	ENST00000398863		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000460378	ENST00000343067		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000460378	ENST00000349460		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000460378	ENST00000373800		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000460378	ENST00000347529		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000460378	ENST00000373798		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-5UTR	ENST00000460378	ENST00000373797		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-intron	ENST00000460378	ENST00000460378		ChiTaRS3.1			BC081539	EPB41	chr1	29241214	-	EPB41	chr1	29314051	+
intron-3CDS	ENST00000379261	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000416382	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000450189	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000542579	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000399850	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000417956	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000354440	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000427450	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000315874	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000608830	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000609692	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000354897	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-3CDS	ENST00000537122	ENST00000248668		ChiTaRS3.1			T06999	CELF2	chr10	11128079	+	LRFN1	chr19	39804715	-
intron-intron	ENST00000371191	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000371191	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371191	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000407417	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000407417	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000479364	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000479364	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000371189	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371189	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-3UTR	ENST00000403491	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000403491	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000371187	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371187	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000485903	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000485903	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000371185	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371185	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000371184	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-intron	ENST00000371184	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000371191		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000407417		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000479364		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000371189		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-3UTR	ENST00000357977	ENST00000403491		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000371187		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000485903		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000371185		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000371184		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
3UTR-intron	ENST00000357977	ENST00000357977		ChiTaRS3.1			BU734929	NFIA	chr1	61923364	-	NFIA	chr1	61924733	-
intron-3UTR	ENST00000295113	ENST00000302190		ChiTaRS3.1			AI366039	FRZB	chr2	183699376	+	SDC2	chr8	97622731	-
intron-intron	ENST00000295113	ENST00000520233		ChiTaRS3.1			AI366039	FRZB	chr2	183699376	+	SDC2	chr8	97622731	-
intron-intron	ENST00000295113	ENST00000518385		ChiTaRS3.1			AI366039	FRZB	chr2	183699376	+	SDC2	chr8	97622731	-
intron-intron	ENST00000295113	ENST00000522911		ChiTaRS3.1			AI366039	FRZB	chr2	183699376	+	SDC2	chr8	97622731	-
intron-intron	ENST00000295113	ENST00000519914		ChiTaRS3.1			AI366039	FRZB	chr2	183699376	+	SDC2	chr8	97622731	-
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BI014309	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3UTR	ENST00000358951	ENST00000358951		ChiTaRS3.1			BE926019	RAB3GAP2	chr1	220322416	+	RAB3GAP2	chr1	220322574	-
intron-intron	ENST00000358951	ENST00000462353		ChiTaRS3.1			BE926019	RAB3GAP2	chr1	220322416	+	RAB3GAP2	chr1	220322574	-
intron-3UTR	ENST00000462353	ENST00000358951		ChiTaRS3.1			BE926019	RAB3GAP2	chr1	220322416	+	RAB3GAP2	chr1	220322574	-
intron-intron	ENST00000462353	ENST00000462353		ChiTaRS3.1			BE926019	RAB3GAP2	chr1	220322416	+	RAB3GAP2	chr1	220322574	-
intron-intron	ENST00000378641	ENST00000378641		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378641	ENST00000338037		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378641	ENST00000378637		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378641	ENST00000494924		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000338037	ENST00000378641		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000338037	ENST00000338037		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000338037	ENST00000378637		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000338037	ENST00000494924		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378637	ENST00000378641		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378637	ENST00000338037		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378637	ENST00000378637		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000378637	ENST00000494924		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000494924	ENST00000378641		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000494924	ENST00000338037		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000494924	ENST00000378637		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
intron-intron	ENST00000494924	ENST00000494924		ChiTaRS3.1			CV383659	PLCB1	chr20	8629285	+	PLCB1	chr20	8618801	+
3UTR-3UTR	ENST00000412278	ENST00000412278		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
3UTR-intron	ENST00000412278	ENST00000511114		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
3UTR-3UTR	ENST00000412278	ENST00000500635		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
intron-3UTR	ENST00000511114	ENST00000412278		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
intron-intron	ENST00000511114	ENST00000511114		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
intron-3UTR	ENST00000511114	ENST00000500635		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
3UTR-3UTR	ENST00000500635	ENST00000412278		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
3UTR-intron	ENST00000500635	ENST00000511114		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
3UTR-3UTR	ENST00000500635	ENST00000500635		ChiTaRS3.1			AA188829	RBM14-RBM4	chr11	66413534	-	RBM14-RBM4	chr11	66413678	+
intron-3CDS	ENST00000392951	ENST00000532219		ChiTaRS3.1			AW998109	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
3UTR-3CDS	ENST00000530649	ENST00000532219		ChiTaRS3.1			AW998109	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
3UTR-3CDS	ENST00000532870	ENST00000532219		ChiTaRS3.1			AW998109	TAGLN	chr11	117075317	+	ANKHD1-EIF4EBP3	chr5	139921798	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807679	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000296484	ENST00000337137		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000296484	ENST00000380995		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000296484	ENST00000407381		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000296484	ENST00000355704		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000296484	ENST00000472791		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000296484	ENST00000406733		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000337137		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000380995		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000407381		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000355704		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000472791		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000394970	ENST00000406733		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000337137		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000380995		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000407381		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000355704		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000472791		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000474012	ENST00000406733		ChiTaRS3.1			BF804749	POC1A	chr3	52170105	-	TBC1D22A	chr22	47281529	+
intron-intron	ENST00000324262	ENST00000348715		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000397647		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000263335		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000429538		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324262	ENST00000263334		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000348715		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000397647		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000263335		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000429538		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000579847	ENST00000263334		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000348715		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000397647		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000263335		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000429538		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000580229	ENST00000263334		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000348715		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000397647		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000263335		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000429538		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-intron	ENST00000324301	ENST00000263334		ChiTaRS3.1			BI010769	CNDP2	chr18	72176440	+	PAX8	chr2	114001208	+
intron-3UTR	ENST00000297477	ENST00000297477		ChiTaRS3.1			BG003089	TMEM184A	chr7	1583814	-	TMEM184A	chr7	1584014	+
intron-5UTR	ENST00000297477	ENST00000449955		ChiTaRS3.1			BG003089	TMEM184A	chr7	1583814	-	TMEM184A	chr7	1584014	+
intron-3UTR	ENST00000449955	ENST00000297477		ChiTaRS3.1			BG003089	TMEM184A	chr7	1583814	-	TMEM184A	chr7	1584014	+
intron-5UTR	ENST00000449955	ENST00000449955		ChiTaRS3.1			BG003089	TMEM184A	chr7	1583814	-	TMEM184A	chr7	1584014	+
intron-3CDS	ENST00000360655	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000360655	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000360655	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000360655	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000360655	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000360655	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000360655	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396085	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396085	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396085	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396085	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396085	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000396085	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000396085	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000349880	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000349880	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000349880	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000349880	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000349880	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000349880	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000349880	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396087	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396087	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396087	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396087	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000396087	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000396087	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000396087	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000527559	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000527559	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000527559	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000527559	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000527559	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000527559	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000527559	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000540292	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000540292	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000540292	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000540292	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000540292	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000540292	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000540292	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000533917	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000533917	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000533917	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000533917	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000533917	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000533917	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000533917	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000311043	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000311043	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000311043	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000311043	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000311043	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000311043	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000311043	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000534229	ENST00000393432		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000534229	ENST00000442819		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000534229	ENST00000356731		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000534229	ENST00000329433		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-3CDS	ENST00000534229	ENST00000510411		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000534229	ENST00000511300		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
intron-intron	ENST00000534229	ENST00000524180		ChiTaRS3.1			BF839309	NAV2	chr11	19963746	+	HNRNPH1	chr5	179045219	-
Frame-shit	ENST00000373960	ENST00000373960		ChiTaRS3.1			BG875589	DES	chr2	220286075	-	DES	chr2	220285027	+
intron-3CDS	ENST00000406606	ENST00000204961		ChiTaRS3.1			BF820909	VAV2	chr9	136633110	+	EFNB1	chrX	68060458	-
intron-3CDS	ENST00000371850	ENST00000204961		ChiTaRS3.1			BF820909	VAV2	chr9	136633110	+	EFNB1	chrX	68060458	-
intron-3CDS	ENST00000371851	ENST00000204961		ChiTaRS3.1			BF820909	VAV2	chr9	136633110	+	EFNB1	chrX	68060458	-
intron-3CDS	ENST00000486113	ENST00000204961		ChiTaRS3.1			BF820909	VAV2	chr9	136633110	+	EFNB1	chrX	68060458	-
intron-3UTR	ENST00000389341	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000389341	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000342301	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000342301	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000533720	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000533720	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000526816	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000526816	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000529067	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529067	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000560558	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560558	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000560398	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000560398	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000529952	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000529952	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-3UTR	ENST00000524801	ENST00000389341		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000342301		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000533720		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000526816		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000529067		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000560558		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000560398		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000529952		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000524801	ENST00000524801		ChiTaRS3.1			BF509229	POU2F2	chr19	42592093	+	POU2F2	chr19	42591154	+
intron-intron	ENST00000303657	ENST00000303657		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000303657	ENST00000359161		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000303657	ENST00000592546		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000303657	ENST00000587700		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000359161	ENST00000303657		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000359161	ENST00000359161		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000359161	ENST00000592546		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000359161	ENST00000587700		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000592546	ENST00000303657		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000592546	ENST00000359161		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000592546	ENST00000592546		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000592546	ENST00000587700		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000587700	ENST00000303657		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000587700	ENST00000359161		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000587700	ENST00000592546		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000587700	ENST00000587700		ChiTaRS3.1			BF365469	RFX2	chr19	6024327	+	RFX2	chr19	6024430	-
intron-intron	ENST00000358303	ENST00000541925		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000542156		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000370390		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000451863		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000544228		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000445323		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000358303	ENST00000538506		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000541925		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000542156		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000370390		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000451863		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000544228		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000445323		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000360708	ENST00000538506		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000541925		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000542156		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000370390		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000451863		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000544228		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000445323		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000311873	ENST00000538506		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000541925		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000542156		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000370390		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000451863		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000544228		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000445323		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-intron	ENST00000481503	ENST00000538506		ChiTaRS3.1			BF365519	ZC3HC1	chr7	129677752	+	MTMR1	chrX	149880963	+
intron-3CDS	ENST00000299550	ENST00000370558		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000299550	ENST00000535010		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000299550	ENST00000482504		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000402157	ENST00000370558		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000402157	ENST00000535010		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000402157	ENST00000482504		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000531498	ENST00000370558		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000531498	ENST00000535010		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
intron-3CDS	ENST00000531498	ENST00000482504		ChiTaRS3.1			BF904839	TRIM66	chr11	8635461	+	SH3GLB1	chr1	87189996	+
3UTR-intron	ENST00000405308	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000405308	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000405308	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000359803	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000359803	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000359803	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395569	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395569	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395569	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395566	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395566	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395566	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
intron-intron	ENST00000533283	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
intron-intron	ENST00000533283	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
intron-intron	ENST00000533283	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000407067	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000407067	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000407067	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395565	ENST00000373647		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395565	ENST00000493854		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
3UTR-intron	ENST00000395565	ENST00000373643		ChiTaRS3.1			AI364889	MDK	chr11	46405189	-	RABGAP1	chr9	125796573	-
intron-intron	ENST00000377526	ENST00000309311		ChiTaRS3.1			AA706989	AUP1	chr2	74754188	+	EEF2	chr19	3981945	+
intron-intron	ENST00000377526	ENST00000600720		ChiTaRS3.1			AA706989	AUP1	chr2	74754188	+	EEF2	chr19	3981945	+
5CDS-intron	ENST00000508628	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000508628	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000259608		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000474403		ChiTaRS3.1			AX748309	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-3UTR	ENST00000321117	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000321117	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000321117	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000321117	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000264709	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000264709	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000264709	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000264709	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000406659	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000406659	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000406659	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000406659	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000380746	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000380746	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000380746	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000380746	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000402667	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000402667	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000402667	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000402667	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000474887	ENST00000351960		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000474887	ENST00000358965		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000474887	ENST00000393695		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-intron	ENST00000474887	ENST00000543450		ChiTaRS3.1			BF083029	DNMT3A	chr2	25494403	+	NUMA1	chr11	71714553	-
intron-3UTR	ENST00000550629	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000550629	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000550629	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000465950	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000465950	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000465950	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000369367	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000369367	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000369367	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000549162	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000549162	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000549162	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000419565	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000419565	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000419565	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000395454	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000395454	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000395454	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-3UTR	ENST00000395453	ENST00000334512		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000395453	ENST00000478357		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
intron-intron	ENST00000395453	ENST00000446377		ChiTaRS3.1			BE840759	SCAF11	chr12	46347699	+	ZMIZ1	chr10	81075850	+
5UTR-3CDS	ENST00000327492	ENST00000216254		ChiTaRS3.1			BU849679	TOB2	chr22	41842383	-	ACO2	chr22	41895730	+
5UTR-3CDS	ENST00000327492	ENST00000396512		ChiTaRS3.1			BU849679	TOB2	chr22	41842383	-	ACO2	chr22	41895730	+
5UTR-intron	ENST00000327492	ENST00000466237		ChiTaRS3.1			BU849679	TOB2	chr22	41842383	-	ACO2	chr22	41895730	+
5CDS-intron	ENST00000170564	ENST00000392365		ChiTaRS3.1			BU664679	GPATCH1	chr19	33579100	+	TFPI	chr2	188419078	-
5CDS-5UTR	ENST00000170564	ENST00000233156		ChiTaRS3.1			BU664679	GPATCH1	chr19	33579100	+	TFPI	chr2	188419078	-
5CDS-5UTR	ENST00000170564	ENST00000409676		ChiTaRS3.1			BU664679	GPATCH1	chr19	33579100	+	TFPI	chr2	188419078	-
5CDS-5UTR	ENST00000170564	ENST00000339091		ChiTaRS3.1			BU664679	GPATCH1	chr19	33579100	+	TFPI	chr2	188419078	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766329	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766329	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000254108	ENST00000254108		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000254108	ENST00000380244		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000254108	ENST00000568685		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000254108	ENST00000474990		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000380244	ENST00000254108		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000380244	ENST00000380244		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000380244	ENST00000568685		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000380244	ENST00000474990		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000568685	ENST00000254108		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000568685	ENST00000380244		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000568685	ENST00000568685		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000568685	ENST00000474990		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000474990	ENST00000254108		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000474990	ENST00000380244		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000474990	ENST00000568685		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-intron	ENST00000474990	ENST00000474990		ChiTaRS3.1			DW423409	FUS	chr16	31197626	+	FUS	chr16	31196530	+
intron-3CDS	ENST00000331925	ENST00000331925		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000331925	ENST00000573283		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000331925	ENST00000575842		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000331925	ENST00000575087		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000573283	ENST00000331925		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000573283	ENST00000573283		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000573283	ENST00000575842		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000573283	ENST00000575087		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575842	ENST00000331925		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575842	ENST00000573283		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575842	ENST00000575842		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575842	ENST00000575087		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575087	ENST00000331925		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575087	ENST00000573283		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575087	ENST00000575842		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000575087	ENST00000575087		ChiTaRS3.1			CB409249	ACTG1	chr17	79479171	+	ACTG1	chr17	79477983	-
intron-3CDS	ENST00000423113	ENST00000423113		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000423113	ENST00000396033		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000423113	ENST00000302278		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000423113	ENST00000374956		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-5UTR	ENST00000423113	ENST00000484088		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000396033	ENST00000423113		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000396033	ENST00000396033		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000396033	ENST00000302278		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000396033	ENST00000374956		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-5UTR	ENST00000396033	ENST00000484088		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000302278	ENST00000423113		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000302278	ENST00000396033		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000302278	ENST00000302278		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000302278	ENST00000374956		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-5UTR	ENST00000302278	ENST00000484088		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000374956	ENST00000423113		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000374956	ENST00000396033		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000374956	ENST00000302278		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000374956	ENST00000374956		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-5UTR	ENST00000374956	ENST00000484088		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000484088	ENST00000423113		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000484088	ENST00000396033		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000484088	ENST00000302278		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-3CDS	ENST00000484088	ENST00000374956		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
intron-5UTR	ENST00000484088	ENST00000484088		ChiTaRS3.1			AA852709	ITGB1	chr10	33221475	+	ITGB1	chr10	33218902	-
5CDS-intron	ENST00000272793	ENST00000262041		ChiTaRS3.1			BM693239	UBR3	chr2	170917928	+	MEOX2	chr7	15718919	+
5CDS-intron	ENST00000418381	ENST00000262041		ChiTaRS3.1			BM693239	UBR3	chr2	170917928	+	MEOX2	chr7	15718919	+
5CDS-intron	ENST00000392631	ENST00000262041		ChiTaRS3.1			BM693239	UBR3	chr2	170917928	+	MEOX2	chr7	15718919	+
intron-intron	ENST00000465630	ENST00000262041		ChiTaRS3.1			BM693239	UBR3	chr2	170917928	+	MEOX2	chr7	15718919	+
5CDS-3UTR	ENST00000391918	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000391918	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000391918	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000391918	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000391918	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000391918	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000391918	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000391918	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000291295	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000291295	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000291295	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-intron	ENST00000597743	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-intron	ENST00000597743	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000597743	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-intron	ENST00000477244	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-intron	ENST00000477244	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
3UTR-3UTR	ENST00000477244	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000598871	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000598871	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000598871	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000594523	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000594523	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000594523	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000599839	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000599839	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000599839	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000391918		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000291295		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000597743		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000477244		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000596362	ENST00000598871		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-intron	ENST00000596362	ENST00000594523		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000599839		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
5CDS-3UTR	ENST00000596362	ENST00000596362		ChiTaRS3.1			BI028359	CALM3	chr19	47112165	+	CALM3	chr19	47112460	-
intron-3UTR	ENST00000396821	ENST00000379802		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000396821	ENST00000418664		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000444597	ENST00000379802		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000444597	ENST00000418664		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000381633	ENST00000379802		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000381633	ENST00000418664		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000432525	ENST00000379802		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-3UTR	ENST00000432525	ENST00000418664		ChiTaRS3.1			BF933159	DDX17	chr22	38879665	-	DSP	chr6	7586498	+
intron-intron	ENST00000472748	ENST00000472748		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000472748	ENST00000422440		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000472748	ENST00000392592		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000422440	ENST00000472748		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000422440	ENST00000422440		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000422440	ENST00000392592		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000392592	ENST00000472748		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000392592	ENST00000422440		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000392592	ENST00000392592		ChiTaRS3.1			AW845689	SLC25A12	chr2	172675216	-	SLC25A12	chr2	172679110	-
intron-intron	ENST00000394609	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394609	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394609	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394609	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394609	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000405240	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000405240	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000405240	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000405240	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000405240	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000357376	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357376	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357376	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357376	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357376	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000317610	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000317610	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000317610	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000317610	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000317610	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000357732	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357732	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357732	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357732	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000357732	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000337526	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000337526	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000337526	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000337526	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000337526	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000394611	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394611	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394611	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394611	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000394611	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000404909	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000404909	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000404909	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000404909	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000404909	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000486085	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000486085	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000486085	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000486085	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000486085	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000354474	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000354474	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000354474	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000354474	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000354474	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-intron	ENST00000402434	ENST00000550241		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000402434	ENST00000602871		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000402434	ENST00000394349		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000402434	ENST00000549164		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
intron-3UTR	ENST00000402434	ENST00000338662		ChiTaRS3.1			BU589519	RTN4	chr2	55200218	-	ATP5G2	chr12	54058999	-
In-frame	ENST00000285968	ENST00000285968		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
5CDS-intron	ENST00000285968	ENST00000440390		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
5CDS-intron	ENST00000285968	ENST00000489493		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-3CDS	ENST00000440390	ENST00000285968		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-intron	ENST00000440390	ENST00000440390		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-intron	ENST00000440390	ENST00000489493		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-3CDS	ENST00000489493	ENST00000285968		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-intron	ENST00000489493	ENST00000440390		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-intron	ENST00000489493	ENST00000489493		ChiTaRS3.1			BM453649	NUP205	chr7	135330252	-	NUP205	chr7	135330295	+
intron-intron	ENST00000545260	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545260	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545260	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000306320		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000399793		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000509048		ChiTaRS3.1			AJ708069	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-3CDS	ENST00000394609	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000405240	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000357376	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000317610	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000357732	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000337526	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000394611	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000404909	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000486085	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000354474	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-3CDS	ENST00000402434	ENST00000254803		ChiTaRS3.1			BU620039	RTN4	chr2	55200046	+	UTP3	chr4	71554967	+
intron-intron	ENST00000525509	ENST00000374685		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000374680		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000544186		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000413614		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000443603		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000436753		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000550731		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000552822		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000531100		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000455462		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000415157		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000546472		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000547763		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000431161		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000415909		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000549662		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000548862		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000383217		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000546468		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000552454		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000383216		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000549199		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000550626		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000456244		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000525509	ENST00000431820		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000374685		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000374680		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000544186		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000413614		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000443603		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000436753		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000550731		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000552822		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000531100		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000455462		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000415157		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000546472		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000547763		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000431161		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000415909		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000549662		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000548862		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000383217		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000546468		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000552454		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000383216		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000549199		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000550626		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000456244		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
3UTR-intron	ENST00000294258	ENST00000431820		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000374685		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000374680		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000544186		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000413614		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000443603		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000436753		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000550731		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000552822		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000531100		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000455462		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000415157		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000546472		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000547763		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000431161		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000415909		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000549662		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000548862		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000383217		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000546468		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000552454		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000383216		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000549199		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000550626		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000456244		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000526791	ENST00000431820		ChiTaRS3.1			CB052569	ZFPL1	chr11	64855814	-	RXRB	chr6	4395862	+
intron-intron	ENST00000292114	ENST00000292114		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000292114	ENST00000509083		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000292114	ENST00000581386		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000292114	ENST00000395404		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000509083	ENST00000292114		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000509083	ENST00000509083		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000509083	ENST00000581386		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000509083	ENST00000395404		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000581386	ENST00000292114		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000581386	ENST00000509083		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000581386	ENST00000581386		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000581386	ENST00000395404		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000395404	ENST00000292114		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000395404	ENST00000509083		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000395404	ENST00000581386		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
intron-intron	ENST00000395404	ENST00000395404		ChiTaRS3.1			CB164079	TMEM199	chr17	26695684	+	TMEM199	chr17	26695080	-
Frame-shit	ENST00000360689	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000360689	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000360689	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
In-frame	ENST00000394586	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
In-frame	ENST00000394586	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000394586	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000557164	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000557164	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000557164	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000394585	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000394585	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000394585	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
In-frame	ENST00000358307	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
In-frame	ENST00000358307	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000358307	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000417683	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
Frame-shit	ENST00000417683	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
5CDS-intron	ENST00000417683	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
intron-3CDS	ENST00000554765	ENST00000373030		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
intron-3CDS	ENST00000554765	ENST00000373039		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
intron-intron	ENST00000554765	ENST00000471199		ChiTaRS3.1			BF996799	FUT8	chr14	66209024	-	IFT52	chr20	42232476	+
In-frame	ENST00000560829	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000560829	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000560829	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000560829	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000560829	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
5CDS-intron	ENST00000560829	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000353874	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000353874	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000353874	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000353874	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000353874	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
5CDS-intron	ENST00000353874	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000261889	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000261889	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000261889	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000261889	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000261889	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
5CDS-intron	ENST00000261889	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000559844	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000559844	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000559844	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000559844	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000559844	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
5CDS-intron	ENST00000559844	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000561026	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000561026	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000561026	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000561026	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
In-frame	ENST00000561026	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
5CDS-intron	ENST00000561026	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-3CDS	ENST00000559339	ENST00000560829		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-3CDS	ENST00000559339	ENST00000353874		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-3CDS	ENST00000559339	ENST00000261889		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-3CDS	ENST00000559339	ENST00000559844		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-3CDS	ENST00000559339	ENST00000561026		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-intron	ENST00000559339	ENST00000559339		ChiTaRS3.1			BE831969	SNX1	chr15	64429103	-	SNX1	chr15	64428545	+
intron-intron	ENST00000363840	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363840	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363840	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363840	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363840	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363840	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000365524	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364822	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000363859	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000385578	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
5CDS-intron	ENST00000363146	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000440558		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000270464		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000419410		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000391735		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000396365		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000364084	ENST00000245621		ChiTaRS3.1			DA673219	GAS5	chr1	173835771	-	LILRA6	chr19	54784941	-
intron-intron	ENST00000450554	ENST00000368026		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000450554	ENST00000289779		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000450554	ENST00000537746		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000450554	ENST00000472573		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000308924	ENST00000368026		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000308924	ENST00000289779		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000308924	ENST00000537746		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000308924	ENST00000472573		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000590551	ENST00000368026		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000590551	ENST00000289779		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000590551	ENST00000537746		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
intron-intron	ENST00000590551	ENST00000472573		ChiTaRS3.1			BF372619	U2AF2	chr19	56180293	-	F11R	chr1	160983349	+
3UTR-intron	ENST00000592613	ENST00000534328		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
3UTR-intron	ENST00000592613	ENST00000332231		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
3UTR-intron	ENST00000592613	ENST00000448903		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
3UTR-3UTR	ENST00000592613	ENST00000525891		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000591366	ENST00000534328		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000591366	ENST00000332231		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000591366	ENST00000448903		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-3UTR	ENST00000591366	ENST00000525891		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000592160	ENST00000534328		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000592160	ENST00000332231		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000592160	ENST00000448903		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-3UTR	ENST00000592160	ENST00000525891		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000343769	ENST00000534328		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000343769	ENST00000332231		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-intron	ENST00000343769	ENST00000448903		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
5CDS-3UTR	ENST00000343769	ENST00000525891		ChiTaRS3.1			DB178459	ZNF93	chr19	20011902	+	AP2A2	chr11	1003721	+
intron-intron	ENST00000371697	ENST00000430846		ChiTaRS3.1			BP259299	ANKRD1	chr10	92679932	-	ATP8B5P	chr9	35406896	+
3UTR-3CDS	ENST00000409018	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409018	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3CDS	ENST00000492815	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000492815	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3CDS	ENST00000409014	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409014	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3CDS	ENST00000409675	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000409675	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3CDS	ENST00000409949	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409949	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3CDS	ENST00000409242	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000409242	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3CDS	ENST00000312994	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
intron-3UTR	ENST00000312994	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3CDS	ENST00000449989	ENST00000409018		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000492815		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000409014		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000409675		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000409949		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000409242		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000312994		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000449989	ENST00000449989		ChiTaRS3.1			W24099	EXD2	chr14	69708475	+	EXD2	chr14	69701705	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AA578709	MALAT1	chr11	65267608	-	MALAT1	chr11	65267785	+
intron-3CDS	ENST00000565698	ENST00000565698		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-3CDS	ENST00000565698	ENST00000304658		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-intron	ENST00000565698	ENST00000561488		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-3CDS	ENST00000304658	ENST00000565698		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-3CDS	ENST00000304658	ENST00000304658		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-intron	ENST00000304658	ENST00000561488		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-3CDS	ENST00000561488	ENST00000565698		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-3CDS	ENST00000561488	ENST00000304658		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-intron	ENST00000561488	ENST00000561488		ChiTaRS3.1			BU557309	XPO6	chr16	28124373	+	XPO6	chr16	28123292	-
intron-5UTR	ENST00000398160	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000398160	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398160	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398160	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000398169	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000398169	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398169	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398169	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000358932	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000358932	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000358932	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000358932	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000437553	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000437553	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000437553	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000437553	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000353689	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000353689	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000353689	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000353689	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000398163	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000398163	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398163	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000398163	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000557114	ENST00000256682		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-5UTR	ENST00000557114	ENST00000447318		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000557114	ENST00000541959		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-intron	ENST00000557114	ENST00000541967		ChiTaRS3.1			BC020999	CCNB1IP1	chr14	20797531	+	ARF3	chr12	49351235	-
intron-3CDS	ENST00000404233	ENST00000404233		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000404233	ENST00000529972		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000404233	ENST00000525859		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000404233	ENST00000543287		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000529972	ENST00000404233		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000529972	ENST00000529972		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000529972	ENST00000525859		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000529972	ENST00000543287		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000525859	ENST00000404233		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000525859	ENST00000529972		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000525859	ENST00000525859		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000525859	ENST00000543287		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000543287	ENST00000404233		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000543287	ENST00000529972		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000543287	ENST00000525859		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
intron-3CDS	ENST00000543287	ENST00000543287		ChiTaRS3.1			BI011249	HYOU1	chr11	118916317	-	HYOU1	chr11	118922651	-
3UTR-intron	ENST00000268638	ENST00000465846		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000476204		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000474040		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000467155		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000480872		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000429755		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000492897		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000487849		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000481995		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000460041		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000474324		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000477144		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000466037		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000491264		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
3UTR-intron	ENST00000268638	ENST00000494420		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000465846		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000476204		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000474040		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000467155		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000480872		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000429755		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000492897		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000487849		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000481995		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000460041		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000474324		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000477144		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000466037		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000491264		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000563180	ENST00000494420		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000465846		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000476204		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000474040		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000467155		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000480872		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000429755		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000492897		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000487849		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000481995		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000460041		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000474324		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000477144		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000466037		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000491264		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-intron	ENST00000562492	ENST00000494420		ChiTaRS3.1			BF062449	IRF8	chr16	85955997	-	HOXB-AS3	chr17	46678257	+
intron-3CDS	ENST00000274695	ENST00000330714		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000274695	ENST00000543692		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000274695	ENST00000496774		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-3CDS	ENST00000378624	ENST00000330714		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000378624	ENST00000543692		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000378624	ENST00000496774		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-3CDS	ENST00000378610	ENST00000330714		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000378610	ENST00000543692		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000378610	ENST00000496774		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-3CDS	ENST00000476517	ENST00000330714		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000476517	ENST00000543692		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000476517	ENST00000496774		ChiTaRS3.1			BF089619	CDKAL1	chr6	21080105	+	MX2	chr21	42752068	-
intron-intron	ENST00000311160	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000311160	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000311160	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000311160	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000355730	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000355730	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000355730	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000355730	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000398879	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000398879	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000398879	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000398879	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000442536	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000442536	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000442536	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000442536	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000458317	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000458317	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000458317	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000458317	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000474346	ENST00000518836		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000474346	ENST00000313708		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000474346	ENST00000380654		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-intron	ENST00000474346	ENST00000517373		ChiTaRS3.1			BQ366999	TNS3	chr7	47420944	-	EBF1	chr5	158309685	+
intron-5UTR	ENST00000376552	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376552	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376552	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376552	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376552	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376520	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376520	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376520	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376520	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376520	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376544	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376544	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376544	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376544	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376544	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376537	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376537	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376537	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376537	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376537	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376534	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376534	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376534	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376534	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000376534	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000265284	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000265284	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000265284	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000265284	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000265284	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000455913	ENST00000536769		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000455913	ENST00000538617		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000455913	ENST00000546120		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000455913	ENST00000339647		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-5UTR	ENST00000455913	ENST00000536661		ChiTaRS3.1			DA362969	TLE4	chr9	82291611	+	UBC	chr12	125399201	-
intron-3CDS	ENST00000370873	ENST00000370873		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370873	ENST00000484488		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370873	ENST00000370861		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-intron	ENST00000370873	ENST00000370858		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-3CDS	ENST00000484488	ENST00000370873		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000484488	ENST00000484488		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000484488	ENST00000370861		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-intron	ENST00000484488	ENST00000370858		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-3CDS	ENST00000370861	ENST00000370873		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370861	ENST00000484488		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370861	ENST00000370861		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-intron	ENST00000370861	ENST00000370858		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-3CDS	ENST00000370858	ENST00000370873		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370858	ENST00000484488		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-5UTR	ENST00000370858	ENST00000370861		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
intron-intron	ENST00000370858	ENST00000370858		ChiTaRS3.1			CA312659	PSMA7	chr20	60713278	+	PSMA7	chr20	60713326	-
5CDS-5UTR	ENST00000531188	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000531188	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000530164	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000530164	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000278572	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000278572	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000534440	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000534440	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000527446	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000527446	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
intron-5UTR	ENST00000526608	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
intron-5UTR	ENST00000526608	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000524851	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
5CDS-5UTR	ENST00000524851	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
3UTR-5UTR	ENST00000529285	ENST00000409280		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
3UTR-5UTR	ENST00000529285	ENST00000283905		ChiTaRS3.1			BP262829	RPS3	chr11	75113427	+	C7orf31	chr7	25219874	-
intron-3UTR	ENST00000322507	ENST00000322507		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000322507	ENST00000345356		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000322507	ENST00000416123		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000322507	ENST00000483888		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000322507	ENST00000511023		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-3UTR	ENST00000345356	ENST00000322507		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000345356	ENST00000345356		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000345356	ENST00000416123		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000345356	ENST00000483888		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000345356	ENST00000511023		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-3UTR	ENST00000416123	ENST00000322507		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000416123	ENST00000345356		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000416123	ENST00000416123		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000416123	ENST00000483888		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000416123	ENST00000511023		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-3UTR	ENST00000483888	ENST00000322507		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000483888	ENST00000345356		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000483888	ENST00000416123		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000483888	ENST00000483888		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000483888	ENST00000511023		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-3UTR	ENST00000511023	ENST00000322507		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000511023	ENST00000345356		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000511023	ENST00000416123		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000511023	ENST00000483888		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-intron	ENST00000511023	ENST00000511023		ChiTaRS3.1			AA541569	COL12A1	chr6	75794078	-	COL12A1	chr6	75794202	+
intron-3CDS	ENST00000164024	ENST00000164024		ChiTaRS3.1			AY714129	CELSR3	chr3	48662831	-	CELSR3	chr3	48689052	-
intron-3CDS	ENST00000164024	ENST00000544264		ChiTaRS3.1			AY714129	CELSR3	chr3	48662831	-	CELSR3	chr3	48689052	-
intron-3CDS	ENST00000544264	ENST00000164024		ChiTaRS3.1			AY714129	CELSR3	chr3	48662831	-	CELSR3	chr3	48689052	-
intron-3CDS	ENST00000544264	ENST00000544264		ChiTaRS3.1			AY714129	CELSR3	chr3	48662831	-	CELSR3	chr3	48689052	-
intron-3UTR	ENST00000436636	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000436636	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000436636	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000436636	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000538048	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000538048	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000538048	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000538048	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000369326	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000369326	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000369326	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000369326	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000341852	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000341852	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000341852	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000341852	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000284483	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000284483	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000284483	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000284483	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000470834	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000470834	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000470834	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000470834	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000460047	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000460047	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000460047	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000460047	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000475336	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000475336	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000475336	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000475336	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000488470	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000488470	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000488470	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000488470	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000357327	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000357327	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000357327	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000357327	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000464785	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000464785	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000464785	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000464785	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000465393	ENST00000373479		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-3UTR	ENST00000465393	ENST00000469731		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000465393	ENST00000394443		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000465393	ENST00000479516		ChiTaRS3.1			AW891339	TNIK	chr3	170877637	+	RNF8	chr6	37358843	-
intron-intron	ENST00000389301	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389301	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000568369	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000567284	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000389302	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000563673	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000534992	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000389301		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000568369		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000567284		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000389302		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000563673		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000534992		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
intron-intron	ENST00000543736	ENST00000543736		ChiTaRS3.1			BF334909	FANCA	chr16	89877722	-	FANCA	chr16	89877617	+
3UTR-3UTR	ENST00000341567	ENST00000341567		ChiTaRS3.1			AA077649	TMEM248	chr7	66420874	+	TMEM248	chr7	66423473	-
3UTR-5UTR	ENST00000369308	ENST00000392882		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-intron	ENST00000369308	ENST00000358655		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-intron	ENST00000369308	ENST00000355338		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-5UTR	ENST00000369308	ENST00000344102		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-intron	ENST00000369308	ENST00000557135		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-intron	ENST00000369308	ENST00000556645		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
3UTR-intron	ENST00000369308	ENST00000554084		ChiTaRS3.1			AL134839	LIX1L	chr1	145501415	-	WARS	chr14	100841734	-
5CDS-intron	ENST00000218867	ENST00000369331		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000369321		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000345633		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000369318		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000369315		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000452490		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000218867	ENST00000468790		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000369331		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000369321		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000345633		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000369318		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000369315		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000452490		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000537476	ENST00000468790		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000369331		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000369321		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000345633		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000369318		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000369315		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000452490		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5CDS-intron	ENST00000545013	ENST00000468790		ChiTaRS3.1			BE711179	SGCG	chr13	23898679	+	CASP7	chr10	115480767	+
5UTR-5UTR	ENST00000370939	ENST00000370939		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5UTR-5UTR	ENST00000370939	ENST00000323557		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5UTR-5UTR	ENST00000370939	ENST00000244426		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5UTR-intron	ENST00000370939	ENST00000461222		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000323557	ENST00000370939		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000323557	ENST00000323557		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000323557	ENST00000244426		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-intron	ENST00000323557	ENST00000461222		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000244426	ENST00000370939		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000244426	ENST00000323557		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-5UTR	ENST00000244426	ENST00000244426		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
5CDS-intron	ENST00000244426	ENST00000461222		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
intron-5UTR	ENST00000461222	ENST00000370939		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
intron-5UTR	ENST00000461222	ENST00000323557		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
intron-5UTR	ENST00000461222	ENST00000244426		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
intron-intron	ENST00000461222	ENST00000461222		ChiTaRS3.1			N67589	FBXO9	chr6	52935895	-	FBXO9	chr6	52935879	+
intron-3CDS	ENST00000335762	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000335762	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000335762	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000335762	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000335762	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399655	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399655	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399655	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399655	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399655	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000480911	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000480911	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000480911	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000480911	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000480911	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399644	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399644	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399644	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399644	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399644	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000344100	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000344100	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000344100	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000344100	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000344100	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399638	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399638	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399638	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399638	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399638	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399629	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399629	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399629	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399629	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399629	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399597	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399597	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399597	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399597	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399597	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000327702	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000327702	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000327702	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000327702	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000327702	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399621	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399621	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399621	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399621	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399621	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399649	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399649	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399649	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399649	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399649	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399637	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399637	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399637	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399637	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399637	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000402845	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000402845	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000402845	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000402845	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000402845	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399591	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399591	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399591	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399591	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399591	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399641	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399641	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399641	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399641	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399641	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000347598	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000347598	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000347598	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000347598	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000347598	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399606	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399606	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399606	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399606	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399606	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399595	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399595	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399595	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399595	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399595	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399601	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399601	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399601	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399601	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399601	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399603	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399603	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399603	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399603	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399603	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399634	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399634	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399634	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399634	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399634	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399617	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399617	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000399617	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399617	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000399617	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000406454	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000406454	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000406454	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000406454	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000406454	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000491104	ENST00000263119		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000491104	ENST00000405822		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-3CDS	ENST00000491104	ENST00000398319		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000491104	ENST00000337989		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000491104	ENST00000485008		ChiTaRS3.1			T20009	CACNA1C	chr12	2646595	-	CABIN1	chr22	24480579	+
intron-intron	ENST00000491186	ENST00000491186		ChiTaRS3.1			BU678979	TCTEX1D2	chr3	196018153	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000491186	ENST00000325318		ChiTaRS3.1			BU678979	TCTEX1D2	chr3	196018153	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000325318	ENST00000491186		ChiTaRS3.1			BU678979	TCTEX1D2	chr3	196018153	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000325318	ENST00000325318		ChiTaRS3.1			BU678979	TCTEX1D2	chr3	196018153	+	TCTEX1D2	chr3	196043102	-
intron-intron	ENST00000351231	ENST00000419197		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000351231	ENST00000526888		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-3UTR	ENST00000351231	ENST00000527958		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000351231	ENST00000529887		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000351231	ENST00000530272		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000302506	ENST00000419197		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000302506	ENST00000526888		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-3UTR	ENST00000302506	ENST00000527958		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000302506	ENST00000529887		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000302506	ENST00000530272		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000459900	ENST00000419197		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000459900	ENST00000526888		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-3UTR	ENST00000459900	ENST00000527958		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000459900	ENST00000529887		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000459900	ENST00000530272		ChiTaRS3.1			BU662239	CDC25A	chr3	48215526	+	PAFAH1B2	chr11	117039756	+
intron-intron	ENST00000368378	ENST00000296933		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000368378	ENST00000265094		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000368378	ENST00000393802		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000368378	ENST00000425623		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000368378	ENST00000522891		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541576	ENST00000296933		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541576	ENST00000265094		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541576	ENST00000393802		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541576	ENST00000425623		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541576	ENST00000522891		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000457183	ENST00000296933		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000457183	ENST00000265094		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000457183	ENST00000393802		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000457183	ENST00000425623		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000457183	ENST00000522891		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541990	ENST00000296933		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541990	ENST00000265094		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541990	ENST00000393802		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541990	ENST00000425623		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000541990	ENST00000522891		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000486260	ENST00000296933		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000486260	ENST00000265094		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000486260	ENST00000393802		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000486260	ENST00000425623		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
intron-intron	ENST00000486260	ENST00000522891		ChiTaRS3.1			BE159509	THBS3	chr1	155175047	-	FBXW11	chr5	171391015	+
3UTR-3CDS	ENST00000370179	ENST00000282382		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
3UTR-3CDS	ENST00000370179	ENST00000333314		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
intron-3CDS	ENST00000370177	ENST00000282382		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
intron-3CDS	ENST00000370177	ENST00000333314		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
intron-3CDS	ENST00000473620	ENST00000282382		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
intron-3CDS	ENST00000473620	ENST00000333314		ChiTaRS3.1			AA631869	PPDPF	chr20	62153363	-	TMED7-TICAM2	chr5	114961461	+
intron-intron	ENST00000313949	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000313949	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000313949	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000313949	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000313949	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000313949	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000313949	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371098	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371098	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371098	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371098	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371098	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371098	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371075	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371075	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371075	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371075	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371075	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371075	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371100	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371100	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371100	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371100	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371100	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371100	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371099	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371099	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371099	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371099	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371099	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371099	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371102	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371102	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371102	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371102	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371102	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371102	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000464624	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000464624	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000464624	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000464624	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000464624	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000464624	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000306120	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000306120	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000306120	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000306120	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000306120	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000306120	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-3UTR	ENST00000371095	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371095	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371095	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371095	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371095	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371095	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-3UTR	ENST00000371085	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371085	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371085	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371085	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000371085	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000371085	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-3UTR	ENST00000354359	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000354359	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000354359	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000354359	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000354359	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000354359	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-3UTR	ENST00000265620	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000265620	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000265620	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000265620	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000265620	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000265620	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-3UTR	ENST00000306090	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000306090	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000306090	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000306090	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-5UTR	ENST00000306090	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
5UTR-intron	ENST00000306090	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000313949		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371098		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371075		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371100		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371099		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371102		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-3UTR	ENST00000371081	ENST00000464624		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000306120		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371081	ENST00000371095		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371081	ENST00000371085		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371081	ENST00000354359		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-5UTR	ENST00000371081	ENST00000265620		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000306090		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000371081	ENST00000371081		ChiTaRS3.1			BQ720919	GNAS	chr20	57466514	-	GNAS	chr20	57466767	+
intron-intron	ENST00000374126	ENST00000374126		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000374126	ENST00000288466		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000374126	ENST00000470105		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000288466	ENST00000374126		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000288466	ENST00000288466		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000288466	ENST00000470105		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000470105	ENST00000374126		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000470105	ENST00000288466		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000470105	ENST00000470105		ChiTaRS3.1			AA346199	ZNF618	chr9	116639824	-	ZNF618	chr9	116639845	+
intron-intron	ENST00000273963	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000273963	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000498875	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000498875	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000425278	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000425278	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000545252	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000545252	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000512111	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000512111	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000506274	ENST00000377791		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-3UTR	ENST00000506274	ENST00000602637		ChiTaRS3.1			BQ348909	KLHL8	chr4	88088395	+	HIST1H2AC	chr6	26138694	-
intron-intron	ENST00000557342	ENST00000392476		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000430767		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000564509		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000585618		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000413679		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000436233		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000443798		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000591437		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557342	ENST00000431431		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000392476		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000430767		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000564509		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000585618		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000413679		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000436233		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000443798		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000591437		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000238688	ENST00000431431		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000392476		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000430767		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000564509		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000585618		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000413679		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000436233		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000443798		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000591437		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557623	ENST00000431431		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000392476		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000430767		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000564509		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000585618		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000413679		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000436233		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000443798		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000591437		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000557431	ENST00000431431		ChiTaRS3.1			N80149	SLIRP	chr14	78183817	-	SEC14L1	chr17	75204352	-
intron-intron	ENST00000402886	ENST00000402886		ChiTaRS3.1			CF125399	TEAD3	chr6	35441679	-	TEAD3	chr6	35448150	-
intron-intron	ENST00000402886	ENST00000338863		ChiTaRS3.1			CF125399	TEAD3	chr6	35441679	-	TEAD3	chr6	35448150	-
intron-intron	ENST00000338863	ENST00000402886		ChiTaRS3.1			CF125399	TEAD3	chr6	35441679	-	TEAD3	chr6	35448150	-
intron-intron	ENST00000338863	ENST00000338863		ChiTaRS3.1			CF125399	TEAD3	chr6	35441679	-	TEAD3	chr6	35448150	-
intron-5UTR	ENST00000337836	ENST00000372014		ChiTaRS3.1			BE388029	C6	chr5	41154064	-	MRPL14	chr6	44095111	-
intron-5UTR	ENST00000263413	ENST00000372014		ChiTaRS3.1			BE388029	C6	chr5	41154064	-	MRPL14	chr6	44095111	-
intron-5UTR	ENST00000475349	ENST00000372014		ChiTaRS3.1			BE388029	C6	chr5	41154064	-	MRPL14	chr6	44095111	-
intron-intron	ENST00000573951	ENST00000573951		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573951	ENST00000538765		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-3UTR	ENST00000573951	ENST00000219069		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573951	ENST00000573578		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573951	ENST00000574253		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000538765	ENST00000573951		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000538765	ENST00000538765		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-3UTR	ENST00000538765	ENST00000219069		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000538765	ENST00000573578		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000538765	ENST00000574253		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000219069	ENST00000573951		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000219069	ENST00000538765		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-3UTR	ENST00000219069	ENST00000219069		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000219069	ENST00000573578		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
3UTR-intron	ENST00000219069	ENST00000574253		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573578	ENST00000573951		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573578	ENST00000538765		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-3UTR	ENST00000573578	ENST00000219069		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573578	ENST00000573578		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000573578	ENST00000574253		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000574253	ENST00000573951		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000574253	ENST00000538765		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-3UTR	ENST00000574253	ENST00000219069		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000574253	ENST00000573578		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000574253	ENST00000574253		ChiTaRS3.1			AA243879	ZNF263	chr16	3340998	-	ZNF263	chr16	3341169	+
intron-intron	ENST00000337195	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000337195	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000531469	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000494626	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000411419	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000476817	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000309035	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000337195		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000531469		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000494626		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000411419		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000476817		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000309035		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000334808	ENST00000334808		ChiTaRS3.1			BF896639	CTBP2	chr10	126838428	+	CTBP2	chr10	126838098	-
intron-intron	ENST00000492607	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000492607	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000492607	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000492607	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000492607	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000326442	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000326442	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000326442	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000326442	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000447204	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000447204	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000447204	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000447204	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000434545	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000434545	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000434545	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000434545	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000429904	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000429904	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000429904	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000429904	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000259873		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000506373		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000472229		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000454427		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000477010		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000437247		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000430402		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000489289		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000418070		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000426945		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000468755		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000412843		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000327800		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000469397		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000400594		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000451032		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000493769		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-intron	ENST00000450753	ENST00000440992		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000450753	ENST00000412451		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000450753	ENST00000428224		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3UTR	ENST00000450753	ENST00000472444		ChiTaRS3.1			AW269879	TMEM176B	chr7	150488514	+	MRPS18B	chr6	1926311	+
intron-3CDS	ENST00000299601	ENST00000299601		ChiTaRS3.1			AW996989	LEO1	chr15	52258133	+	LEO1	chr15	52252204	-
intron-3CDS	ENST00000299601	ENST00000315141		ChiTaRS3.1			AW996989	LEO1	chr15	52258133	+	LEO1	chr15	52252204	-
intron-3CDS	ENST00000315141	ENST00000299601		ChiTaRS3.1			AW996989	LEO1	chr15	52258133	+	LEO1	chr15	52252204	-
intron-3CDS	ENST00000315141	ENST00000315141		ChiTaRS3.1			AW996989	LEO1	chr15	52258133	+	LEO1	chr15	52252204	-
intron-intron	ENST00000296666	ENST00000396659		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000296666	ENST00000558336		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000296666	ENST00000458245		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000442138	ENST00000396659		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000442138	ENST00000558336		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000442138	ENST00000458245		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000512635	ENST00000396659		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000512635	ENST00000558336		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000512635	ENST00000458245		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000513427	ENST00000396659		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000513427	ENST00000558336		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
intron-intron	ENST00000513427	ENST00000458245		ChiTaRS3.1			BE503419	PRRC1	chr5	126867959	-	GATM	chr15	45681830	+
3UTR-intron	ENST00000382062	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000382062	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000382062	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000382062	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000487365	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000487365	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000487365	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000487365	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000236693	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000236693	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000236693	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000236693	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000349077	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000349077	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000349077	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000349077	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000418971	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000418971	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000418971	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000418971	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000403096	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000403096	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000403096	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000403096	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402922	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402922	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402922	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402922	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402794	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402794	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402794	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000402794	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000404205	ENST00000580974		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000404205	ENST00000299954		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000404205	ENST00000335257		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
3UTR-intron	ENST00000404205	ENST00000581322		ChiTaRS3.1			AA742449	COLEC11	chr2	3691734	-	PITPNC1	chr17	65473288	-
Frame-shit	ENST00000350638	ENST00000368830		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000350638	ENST00000467306		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000350638	ENST00000368829		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
Frame-shit	ENST00000379163	ENST00000368830		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000379163	ENST00000467306		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000379163	ENST00000368829		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
Frame-shit	ENST00000395934	ENST00000368830		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000395934	ENST00000467306		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
5CDS-5UTR	ENST00000395934	ENST00000368829		ChiTaRS3.1			BP431009	ELP4	chr11	31561238	+	MRPL9	chr1	151732583	+
intron-3CDS	ENST00000578229	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000578229	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000578229	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000578229	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000580454	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000580454	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000580454	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000580454	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000579760	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000579760	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000579760	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000579760	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000339142	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000339142	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000339142	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000339142	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000311661	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000311661	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000311661	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000311661	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000354124	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000354124	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000354124	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000354124	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000392445	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-3CDS	ENST00000392445	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000392445	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
3UTR-intron	ENST00000392445	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000581774	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000581774	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000581774	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000581774	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000583904	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000583904	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000583904	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000583904	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000580474	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000580474	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000580474	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000580474	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000582625	ENST00000395146		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3CDS	ENST00000582625	ENST00000307808		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000582625	ENST00000544085		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-intron	ENST00000582625	ENST00000511996		ChiTaRS3.1			BF064219	C1QTNF1	chr17	77045803	-	AFF1	chr4	87968067	-
intron-3UTR	ENST00000361189	ENST00000534336		ChiTaRS3.1			BQ355199	PJA2	chr5	108714106	+	MALAT1	chr11	65272778	+
intron-3UTR	ENST00000361557	ENST00000534336		ChiTaRS3.1			BQ355199	PJA2	chr5	108714106	+	MALAT1	chr11	65272778	+
intron-3UTR	ENST00000511624	ENST00000534336		ChiTaRS3.1			BQ355199	PJA2	chr5	108714106	+	MALAT1	chr11	65272778	+
intron-intron	ENST00000391918	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000391918	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000391918	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000391918	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000291295	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000291295	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000291295	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000291295	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000597743	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000597743	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000597743	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000597743	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000477244	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000477244	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000477244	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000477244	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000598871	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000598871	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000598871	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000598871	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000594523	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000594523	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000594523	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000594523	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000599839	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000599839	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000599839	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000599839	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000596362	ENST00000376070		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000596362	ENST00000376087		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000596362	ENST00000436985		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-intron	ENST00000596362	ENST00000466890		ChiTaRS3.1			BF839329	CALM3	chr19	47111347	+	ANKRD26	chr10	27369486	-
intron-3UTR	ENST00000303575	ENST00000534336		ChiTaRS3.1			AW747969	TMED10	chr14	75602523	+	MALAT1	chr11	65266862	+
intron-3UTR	ENST00000557670	ENST00000534336		ChiTaRS3.1			AW747969	TMED10	chr14	75602523	+	MALAT1	chr11	65266862	+
intron-intron	ENST00000398158	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398158	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398158	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398158	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398165	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398165	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398165	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398165	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000359624	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000359624	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000359624	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000359624	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000352178	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000352178	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000352178	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000352178	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398168	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398168	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398168	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000398168	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000544202	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000544202	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000544202	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000544202	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000470912	ENST00000379122		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000470912	ENST00000332496		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000470912	ENST00000560263		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-intron	ENST00000470912	ENST00000411539		ChiTaRS3.1			BQ332259	CBS	chr21	44473660	-	SEMA4B	chr15	90752806	+
intron-5UTR	ENST00000459703	ENST00000459703		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000459703	ENST00000393189		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000459703	ENST00000244751		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000393189	ENST00000459703		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000393189	ENST00000393189		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000393189	ENST00000244751		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000244751	ENST00000459703		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000244751	ENST00000393189		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
intron-5UTR	ENST00000244751	ENST00000244751		ChiTaRS3.1			AI656119	CPNE5	chr6	36733153	+	CPNE5	chr6	36710169	+
3UTR-intron	ENST00000513024	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000513024	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509638	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000508501	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512946	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000313860	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512632	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000512820	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000503057	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000511496	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000514096	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509277	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000396595	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
3UTR-intron	ENST00000381753	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000509454	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000523629		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000396218		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000265814		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000360348		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000436581		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000520724		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000518844		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000522163		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000422361		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000515785	ENST00000521553		ChiTaRS3.1			DQ177301	LIMCH1	chr4	41700527	+	RUNX1T1	chr8	93081521	-
intron-intron	ENST00000377067	ENST00000328908		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000377067	ENST00000397588		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000377067	ENST00000472453		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000377067	ENST00000449732		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000377067	ENST00000343762		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000483422	ENST00000328908		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000483422	ENST00000397588		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000483422	ENST00000472453		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000483422	ENST00000449732		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000483422	ENST00000343762		ChiTaRS3.1			AI827689	GPC5	chr13	93004461	+	CDYL	chr6	4716117	-
intron-intron	ENST00000367584	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000367584	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000367584	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000427704	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000427704	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000427704	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000305766	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000305766	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000305766	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000440869	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000440869	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000440869	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000367582	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000367582	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000367582	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000397980	ENST00000402685		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000397980	ENST00000539469		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
intron-intron	ENST00000397980	ENST00000298919		ChiTaRS3.1			AW894009	PHACTR2	chr6	144138108	-	PDZRN4	chr12	41815052	-
3UTR-3UTR	ENST00000306627	ENST00000306627		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000306627	ENST00000346855		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000306627	ENST00000467766		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000306627	ENST00000424381		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000306627	ENST00000475680		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000346855	ENST00000306627		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000346855	ENST00000346855		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000346855	ENST00000467766		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000346855	ENST00000424381		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000346855	ENST00000475680		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000467766	ENST00000306627		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000467766	ENST00000346855		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-intron	ENST00000467766	ENST00000467766		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000467766	ENST00000424381		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-intron	ENST00000467766	ENST00000475680		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000424381	ENST00000306627		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000424381	ENST00000346855		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000424381	ENST00000467766		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-3UTR	ENST00000424381	ENST00000424381		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
3UTR-intron	ENST00000424381	ENST00000475680		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000475680	ENST00000306627		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000475680	ENST00000346855		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-intron	ENST00000475680	ENST00000467766		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3UTR	ENST00000475680	ENST00000424381		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-intron	ENST00000475680	ENST00000475680		ChiTaRS3.1			BU675579	UBE2E1	chr3	23932727	-	UBE2E1	chr3	23932617	+
intron-3CDS	ENST00000379056	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379056	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379056	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379056	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379056	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379056	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000529421	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000529421	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000529421	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000529421	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000529421	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000529421	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000530705	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000530705	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000530705	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000530705	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000530705	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000530705	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000379060	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379060	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379060	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379060	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379060	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379060	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000379055	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379055	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379055	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379055	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379055	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000379055	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000309246	ENST00000379056		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000309246	ENST00000529421		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000309246	ENST00000530705		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000309246	ENST00000379060		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000309246	ENST00000379055		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-5UTR	ENST00000309246	ENST00000309246		ChiTaRS3.1			BI006729	TPT1	chr13	45913674	+	TPT1	chr13	45912870	-
intron-3CDS	ENST00000368016	ENST00000368016		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368016	ENST00000368013		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368016	ENST00000368015		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368013	ENST00000368016		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368013	ENST00000368013		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368013	ENST00000368015		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368015	ENST00000368016		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368015	ENST00000368013		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3CDS	ENST00000368015	ENST00000368015		ChiTaRS3.1			DA482579	ARHGAP30	chr1	161018390	-	ARHGAP30	chr1	161023119	-
intron-3UTR	ENST00000298130	ENST00000298130		ChiTaRS3.1			CD240239	SPTSSA	chr14	34903383	-	SPTSSA	chr14	34903519	+
intron-3CDS	ENST00000307751	ENST00000368395		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000338684		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000438413		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000457295		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000462215		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368392		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368393		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368390		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368396		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000343256		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368398		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368389		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000342482		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000337604		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-3CDS	ENST00000597803	ENST00000368395		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000338684		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000438413		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000457295		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000462215		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368392		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368393		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368390		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368396		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000343256		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368398		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368389		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000342482		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000337604		ChiTaRS3.1			AW391729	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006729	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000181839	ENST00000294338		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000181839	ENST00000491793		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000181839	ENST00000371885		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-3CDS	ENST00000340829	ENST00000294338		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000340829	ENST00000491793		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000340829	ENST00000371885		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-3CDS	ENST00000484589	ENST00000294338		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000484589	ENST00000491793		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000484589	ENST00000371885		ChiTaRS3.1			U21049	CDK13	chr7	39995933	+	PDZK1IP1	chr1	47655727	-
intron-intron	ENST00000434074	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000312040	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000451945	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000529655	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000530500	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000526508	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000524625	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000359513	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000528494	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000526485	ENST00000331825		ChiTaRS3.1			BF857599	ATG13	chr11	46678487	-	FTL	chr19	49469491	+
intron-intron	ENST00000262809	ENST00000534358		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000262809	ENST00000389506		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000262809	ENST00000354520		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000262809	ENST00000420751		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000596124	ENST00000534358		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000596124	ENST00000389506		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000596124	ENST00000354520		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
intron-intron	ENST00000596124	ENST00000420751		ChiTaRS3.1			DQ437653	ELL	chr19	18617518	-	KMT2A	chr11	118358209	+
3UTR-3UTR	ENST00000249760	ENST00000534336		ChiTaRS3.1			AA618569	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-3UTR	ENST00000490194	ENST00000534336		ChiTaRS3.1			AA618569	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-3UTR	ENST00000487418	ENST00000534336		ChiTaRS3.1			AA618569	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
3UTR-3UTR	ENST00000479013	ENST00000534336		ChiTaRS3.1			AA618569	IVD	chr15	40713130	-	MALAT1	chr11	65268007	-
intron-3UTR	ENST00000383737	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000383737	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000383737	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000383737	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000383737	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000395734	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000395734	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000395734	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000395734	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000395734	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000426837	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000426837	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000426837	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000426837	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000426837	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000360240	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000360240	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000360240	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000360240	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000360240	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000439356	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000439356	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000439356	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000439356	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000439356	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000264724	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000264724	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000264724	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000264724	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000264724	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000420772	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000420772	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000420772	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000420772	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000420772	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000441748	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000441748	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000441748	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000441748	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000441748	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000462206	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000462206	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000462206	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000462206	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000462206	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000434267	ENST00000383737		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000434267	ENST00000395734		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000434267	ENST00000426837		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000360240		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000439356		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-3UTR	ENST00000434267	ENST00000264724		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000420772		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000441748		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000462206		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
intron-intron	ENST00000434267	ENST00000434267		ChiTaRS3.1			AA446689	MAP4	chr3	47892567	-	MAP4	chr3	47893147	-
3UTR-3UTR	ENST00000369799	ENST00000369799		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
3UTR-intron	ENST00000369799	ENST00000475081		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
3UTR-intron	ENST00000369799	ENST00000359172		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
3UTR-intron	ENST00000369799	ENST00000393614		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-3UTR	ENST00000475081	ENST00000369799		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000475081	ENST00000475081		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000475081	ENST00000359172		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000475081	ENST00000393614		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-3UTR	ENST00000359172	ENST00000369799		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000359172	ENST00000475081		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000359172	ENST00000359172		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000359172	ENST00000393614		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-3UTR	ENST00000393614	ENST00000369799		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000393614	ENST00000475081		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000393614	ENST00000359172		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
intron-intron	ENST00000393614	ENST00000393614		ChiTaRS3.1			BQ776309	AHCYL1	chr1	110565797	-	AHCYL1	chr1	110565596	+
3UTR-intron	ENST00000469172	ENST00000367028		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
3UTR-intron	ENST00000469172	ENST00000261465		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
3UTR-intron	ENST00000469172	ENST00000367027		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000265866	ENST00000367028		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000265866	ENST00000261465		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000265866	ENST00000367027		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000441000	ENST00000367028		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000441000	ENST00000261465		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000441000	ENST00000367027		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000354695	ENST00000367028		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000354695	ENST00000261465		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
5CDS-intron	ENST00000354695	ENST00000367027		ChiTaRS3.1			BG954179	HNRNPH3	chr10	70099312	+	HSD11B1	chr1	209897701	+
3UTR-intron	ENST00000226230	ENST00000226230		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
3UTR-intron	ENST00000226230	ENST00000583381		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
3UTR-intron	ENST00000226230	ENST00000582113		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
3UTR-intron	ENST00000226230	ENST00000336687		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000583381	ENST00000226230		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000583381	ENST00000583381		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000583381	ENST00000582113		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000583381	ENST00000336687		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000582113	ENST00000226230		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000582113	ENST00000583381		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000582113	ENST00000582113		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000582113	ENST00000336687		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000336687	ENST00000226230		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000336687	ENST00000583381		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000336687	ENST00000582113		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
intron-intron	ENST00000336687	ENST00000336687		ChiTaRS3.1			BU607589	TMEM97	chr17	26655514	+	TMEM97	chr17	26657554	-
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000538546	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000538546	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535623	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000535623	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000535011	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000535011	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000542996	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000542996	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000249364	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000249364	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000449187	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000449187	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000479257	ENST00000449187		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-intron	ENST00000479257	ENST00000479257		ChiTaRS3.1			DN914239	CALU	chr7	128409657	-	CALU	chr7	128410023	+
3UTR-3UTR	ENST00000324262	ENST00000541285		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
3UTR-3UTR	ENST00000324262	ENST00000399138		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
3UTR-3UTR	ENST00000579847	ENST00000541285		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
3UTR-3UTR	ENST00000579847	ENST00000399138		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
intron-3UTR	ENST00000580229	ENST00000541285		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
intron-3UTR	ENST00000580229	ENST00000399138		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
3UTR-3UTR	ENST00000324301	ENST00000541285		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
3UTR-3UTR	ENST00000324301	ENST00000399138		ChiTaRS3.1			AI906669	CNDP2	chr18	72187366	+	ALKBH5	chr17	18112581	-
intron-3CDS	ENST00000529202	ENST00000391807		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000529202	ENST00000595820		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000529202	ENST00000336317		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000529202	ENST00000597707		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000529202	ENST00000595638		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000263182	ENST00000391807		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000263182	ENST00000595820		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000263182	ENST00000336317		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000263182	ENST00000597707		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000263182	ENST00000595638		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000528583	ENST00000391807		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000528583	ENST00000595820		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000528583	ENST00000336317		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000528583	ENST00000597707		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000528583	ENST00000595638		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000525090	ENST00000391807		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000525090	ENST00000595820		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000525090	ENST00000336317		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000525090	ENST00000597707		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000525090	ENST00000595638		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000527505	ENST00000391807		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-3CDS	ENST00000527505	ENST00000595820		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000527505	ENST00000336317		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-5UTR	ENST00000527505	ENST00000597707		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000527505	ENST00000595638		ChiTaRS3.1			BF750399	BBOX1	chr11	27114184	+	KLK7	chr19	51483708	+
intron-intron	ENST00000442283	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000442283	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000442283	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000318218	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000318218	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000318218	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000522463	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000522463	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000522463	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000521420	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000521420	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000521420	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000347377	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000347377	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000347377	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000377576	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000377576	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000377576	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000541131	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000541131	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000541131	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000435847	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000435847	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000435847	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000520960	ENST00000515137		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000520960	ENST00000265498		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000520960	ENST00000506797		ChiTaRS3.1			AB058719	CYFIP2	chr5	156811175	-	MGST2	chr4	141075233	-
intron-intron	ENST00000406870	ENST00000406870		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000406870	ENST00000232014		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000406870	ENST00000450123		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000406870	ENST00000496823		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000232014	ENST00000406870		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000232014	ENST00000232014		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000232014	ENST00000450123		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000232014	ENST00000496823		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000450123	ENST00000406870		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000450123	ENST00000232014		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000450123	ENST00000450123		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000450123	ENST00000496823		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000496823	ENST00000406870		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000496823	ENST00000232014		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000496823	ENST00000450123		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000496823	ENST00000496823		ChiTaRS3.1			CB240659	BCL6	chr3	187455892	+	BCL6	chr3	187456013	-
intron-intron	ENST00000324616	ENST00000554659		ChiTaRS3.1			BE709559	C12orf40	chr12	40065681	-	VTI1B	chr14	68133349	-
intron-intron	ENST00000405531	ENST00000554659		ChiTaRS3.1			BE709559	C12orf40	chr12	40065681	-	VTI1B	chr14	68133349	-
intron-intron	ENST00000398716	ENST00000554659		ChiTaRS3.1			BE709559	C12orf40	chr12	40065681	-	VTI1B	chr14	68133349	-
intron-5UTR	ENST00000536359	ENST00000378364		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000536359	ENST00000426324		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000536359	ENST00000563655		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000316916	ENST00000378364		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000316916	ENST00000426324		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000316916	ENST00000563655		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000507237	ENST00000378364		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000507237	ENST00000426324		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-5UTR	ENST00000507237	ENST00000563655		ChiTaRS3.1			BQ222629	TMEM185A	chrX	148693035	+	APRT	chr16	88878314	-
intron-intron	ENST00000305877	ENST00000299340		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000305877	ENST00000435845		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000305877	ENST00000400043		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000359540	ENST00000299340		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000359540	ENST00000435845		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000359540	ENST00000400043		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000398512	ENST00000299340		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000398512	ENST00000435845		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000398512	ENST00000400043		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000436990	ENST00000299340		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000436990	ENST00000435845		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
intron-intron	ENST00000436990	ENST00000400043		ChiTaRS3.1			U19397	BCR	chr22	23634611	-	CYYR1	chr21	27878123	+
In-frame	ENST00000380130	ENST00000358704		ChiTaRS3.1			BE242289	N4BP2L1	chr13	33002034	-	ZBTB18	chr1	244217086	+
In-frame	ENST00000380139	ENST00000358704		ChiTaRS3.1			BE242289	N4BP2L1	chr13	33002034	-	ZBTB18	chr1	244217086	+
intron-3CDS	ENST00000530622	ENST00000358704		ChiTaRS3.1			BE242289	N4BP2L1	chr13	33002034	-	ZBTB18	chr1	244217086	+
intron-3CDS	ENST00000459716	ENST00000358704		ChiTaRS3.1			BE242289	N4BP2L1	chr13	33002034	-	ZBTB18	chr1	244217086	+
In-frame	ENST00000380133	ENST00000358704		ChiTaRS3.1			BE242289	N4BP2L1	chr13	33002034	-	ZBTB18	chr1	244217086	+
intron-3UTR	ENST00000323963	ENST00000370179		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000323963	ENST00000370177		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000323963	ENST00000473620		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-3UTR	ENST00000440191	ENST00000370179		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000440191	ENST00000370177		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000440191	ENST00000473620		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-3UTR	ENST00000356531	ENST00000370179		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000356531	ENST00000370177		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000356531	ENST00000473620		ChiTaRS3.1			BM834299	EIF4A2	chr3	186501436	+	PPDPF	chr20	62153365	+
intron-intron	ENST00000361439	ENST00000546296		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000361439	ENST00000539925		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000361439	ENST00000228918		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000361439	ENST00000543190		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000361439	ENST00000541102		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000565384	ENST00000546296		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000565384	ENST00000539925		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000565384	ENST00000228918		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000565384	ENST00000543190		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000565384	ENST00000541102		ChiTaRS3.1			BE069149	NSMCE1	chr16	27268806	+	LTBR	chr12	6500729	-
intron-intron	ENST00000523731	ENST00000337147		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000523731	ENST00000367075		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000523731	ENST00000392177		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000523731	ENST00000476189		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000447247	ENST00000337147		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000447247	ENST00000367075		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000447247	ENST00000392177		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000447247	ENST00000476189		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000520845	ENST00000337147		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000520845	ENST00000367075		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000520845	ENST00000392177		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-intron	ENST00000520845	ENST00000476189		ChiTaRS3.1			BF370449	INTS8	chr8	95877186	+	EZR	chr6	159194456	+
intron-3UTR	ENST00000368911	ENST00000582707		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-intron	ENST00000368911	ENST00000400266		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000368911	ENST00000383589		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000368911	ENST00000261601		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000323817	ENST00000582707		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-intron	ENST00000323817	ENST00000400266		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000323817	ENST00000383589		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000323817	ENST00000261601		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000413605	ENST00000582707		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-intron	ENST00000413605	ENST00000400266		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000413605	ENST00000383589		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000413605	ENST00000261601		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000497709	ENST00000582707		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-intron	ENST00000497709	ENST00000400266		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000497709	ENST00000383589		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3UTR	ENST00000497709	ENST00000261601		ChiTaRS3.1			AI207519	CDK19	chr6	110974176	+	USP14	chr18	211368	+
intron-3CDS	ENST00000368630	ENST00000368630		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000368630	ENST00000368633		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-intron	ENST00000368630	ENST00000476883		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000368633	ENST00000368630		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000368633	ENST00000368633		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-intron	ENST00000368633	ENST00000476883		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000476883	ENST00000368630		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000476883	ENST00000368633		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-intron	ENST00000476883	ENST00000476883		ChiTaRS3.1			BF836669	CRTC2	chr1	153920677	-	CRTC2	chr1	153920957	+
intron-3CDS	ENST00000578921	ENST00000320985		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3CDS	ENST00000578921	ENST00000361642		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000578921	ENST00000559858		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000578921	ENST00000560721		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000578921	ENST00000542815		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-intron	ENST00000578921	ENST00000446923		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3CDS	ENST00000577284	ENST00000320985		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3CDS	ENST00000577284	ENST00000361642		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000577284	ENST00000559858		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000577284	ENST00000560721		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-3UTR	ENST00000577284	ENST00000542815		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-intron	ENST00000577284	ENST00000446923		ChiTaRS3.1			U19969	RAB31	chr18	9722157	+	ZEB1	chr10	31608180	+
intron-intron	ENST00000554335	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-intron	ENST00000251091	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-intron	ENST00000555112	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-intron	ENST00000392067	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-intron	ENST00000357634	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-intron	ENST00000555192	ENST00000233813		ChiTaRS3.1			BM981449	SAMD4A	chr14	55074639	-	IGFBP5	chr2	217549926	+
intron-3UTR	ENST00000451020	ENST00000272638		ChiTaRS3.1			BE764939	ABCA11P	chr4	437956	+	UBXN4	chr2	136541799	-
intron-3UTR	ENST00000451020	ENST00000490163		ChiTaRS3.1			BE764939	ABCA11P	chr4	437956	+	UBXN4	chr2	136541799	-
intron-5UTR	ENST00000321063	ENST00000305978		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000321063	ENST00000373991		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000359827	ENST00000305978		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000359827	ENST00000373991		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000423507	ENST00000305978		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000423507	ENST00000373991		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000378539	ENST00000305978		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-5UTR	ENST00000378539	ENST00000373991		ChiTaRS3.1			BF315459	PLXNA4	chr7	132085325	-	SCAND1	chr20	34542220	-
intron-3CDS	ENST00000394894	ENST00000343010		ChiTaRS3.1			DB306899	KIF20A	chr5	137523488	+	C3orf62	chr3	49308714	+
intron-3CDS	ENST00000508792	ENST00000343010		ChiTaRS3.1			DB306899	KIF20A	chr5	137523488	+	C3orf62	chr3	49308714	+
3UTR-intron	ENST00000373913	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000373913	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000401952	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000401952	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
intron-intron	ENST00000373907	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
intron-intron	ENST00000373907	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000339266	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000339266	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000475894	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
3UTR-intron	ENST00000475894	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
intron-intron	ENST00000340491	ENST00000566339		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
intron-intron	ENST00000340491	ENST00000301717		ChiTaRS3.1			AW844629	DLGAP4	chr20	35156037	-	SPSB3	chr16	1830389	-
intron-5UTR	ENST00000296084	ENST00000542285		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-intron	ENST00000296084	ENST00000602298		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-5UTR	ENST00000427044	ENST00000542285		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-intron	ENST00000427044	ENST00000602298		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-5UTR	ENST00000484106	ENST00000542285		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-intron	ENST00000484106	ENST00000602298		ChiTaRS3.1			AU098919	RYK	chr3	133921659	-	C1R	chr12	7245056	-
intron-intron	ENST00000390548	ENST00000430627		ChiTaRS3.1			BF795029	IGHG1	chr14	107258926	+	CDK12	chr17	37688979	+
intron-3UTR	ENST00000390548	ENST00000447079		ChiTaRS3.1			BF795029	IGHG1	chr14	107258926	+	CDK12	chr17	37688979	+
intron-intron	ENST00000390548	ENST00000559545		ChiTaRS3.1			BF795029	IGHG1	chr14	107258926	+	CDK12	chr17	37688979	+
5CDS-intron	ENST00000360184	ENST00000164024		ChiTaRS3.1			EG327939	DYNC1H1	chr14	102510993	+	CELSR3	chr3	48670509	-
5CDS-intron	ENST00000360184	ENST00000544264		ChiTaRS3.1			EG327939	DYNC1H1	chr14	102510993	+	CELSR3	chr3	48670509	-
intron-intron	ENST00000556791	ENST00000164024		ChiTaRS3.1			EG327939	DYNC1H1	chr14	102510993	+	CELSR3	chr3	48670509	-
intron-intron	ENST00000556791	ENST00000544264		ChiTaRS3.1			EG327939	DYNC1H1	chr14	102510993	+	CELSR3	chr3	48670509	-
intron-3CDS	ENST00000218867	ENST00000218867		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
intron-3CDS	ENST00000218867	ENST00000537476		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
intron-3CDS	ENST00000218867	ENST00000545013		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
intron-3CDS	ENST00000537476	ENST00000218867		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
intron-3CDS	ENST00000537476	ENST00000537476		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
intron-3CDS	ENST00000537476	ENST00000545013		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
5UTR-3CDS	ENST00000545013	ENST00000218867		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
5UTR-3CDS	ENST00000545013	ENST00000537476		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
5UTR-3CDS	ENST00000545013	ENST00000545013		ChiTaRS3.1			BQ307129	SGCG	chr13	23765413	-	SGCG	chr13	23853508	+
In-frame	ENST00000313269	ENST00000313269		ChiTaRS3.1			BG491399	GRINA	chr8	145066157	-	GRINA	chr8	145066208	+
In-frame	ENST00000313269	ENST00000395068		ChiTaRS3.1			BG491399	GRINA	chr8	145066157	-	GRINA	chr8	145066208	+
In-frame	ENST00000395068	ENST00000313269		ChiTaRS3.1			BG491399	GRINA	chr8	145066157	-	GRINA	chr8	145066208	+
In-frame	ENST00000395068	ENST00000395068		ChiTaRS3.1			BG491399	GRINA	chr8	145066157	-	GRINA	chr8	145066208	+
intron-intron	ENST00000296721	ENST00000339865		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000296721	ENST00000539466		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000296721	ENST00000527733		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000296721	ENST00000399455		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000296721	ENST00000305481		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000522492	ENST00000339865		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000522492	ENST00000539466		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000522492	ENST00000527733		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000522492	ENST00000399455		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000522492	ENST00000305481		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000515000	ENST00000339865		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000515000	ENST00000539466		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000515000	ENST00000527733		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000515000	ENST00000399455		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000515000	ENST00000305481		ChiTaRS3.1			BF857489	AFAP1L1	chr5	148703191	-	USP47	chr11	11969900	+
intron-intron	ENST00000356698	ENST00000374820		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000356698	ENST00000452740		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000356698	ENST00000480175		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000368317	ENST00000374820		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000368317	ENST00000452740		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000368317	ENST00000480175		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000485757	ENST00000374820		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000485757	ENST00000452740		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000485757	ENST00000480175		ChiTaRS3.1			AA826049	RSPO3	chr6	126965495	-	PIGU	chr20	33157355	+
intron-intron	ENST00000360252	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000360252	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000475892	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000356185	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000350612	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000464744	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000542180	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000360252		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000475892		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000356185		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000350612		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000464744		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000542180		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000470359	ENST00000470359		ChiTaRS3.1			AI274639	SUPT20H	chr13	37597838	+	SUPT20H	chr13	37597908	-
intron-intron	ENST00000404771	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000442544		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000412726		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000581580		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000580146		ChiTaRS3.1			BF086459	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
3UTR-3UTR	ENST00000250092	ENST00000375436		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
3UTR-intron	ENST00000250092	ENST00000474892		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
3UTR-intron	ENST00000250092	ENST00000375433		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
3UTR-3UTR	ENST00000380498	ENST00000375436		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
3UTR-intron	ENST00000380498	ENST00000474892		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
3UTR-intron	ENST00000380498	ENST00000375433		ChiTaRS3.1			AW305219	CD68	chr17	7485329	-	RCC2	chr1	17733375	+
intron-intron	ENST00000341255	ENST00000580170		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-intron	ENST00000341255	ENST00000332175		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-intron	ENST00000341255	ENST00000400060		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-intron	ENST00000341255	ENST00000400053		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-intron	ENST00000341255	ENST00000444013		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-intron	ENST00000341255	ENST00000578571		ChiTaRS3.1			BF848439	LDOC1L	chr22	44890440	-	PTPRM	chr18	7745715	-
intron-3CDS	ENST00000349769	ENST00000349769		ChiTaRS3.1			BF817869	CPSF1	chr8	145620162	+	CPSF1	chr8	145620498	-
intron-intron	ENST00000349769	ENST00000531727		ChiTaRS3.1			BF817869	CPSF1	chr8	145620162	+	CPSF1	chr8	145620498	-
intron-3CDS	ENST00000531727	ENST00000349769		ChiTaRS3.1			BF817869	CPSF1	chr8	145620162	+	CPSF1	chr8	145620498	-
intron-intron	ENST00000531727	ENST00000531727		ChiTaRS3.1			BF817869	CPSF1	chr8	145620162	+	CPSF1	chr8	145620498	-
In-frame	ENST00000559624	ENST00000559624		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000559624	ENST00000382727		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000559624	ENST00000263791		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000559624	ENST00000560648		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000559624	ENST00000559311		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000382727	ENST00000559624		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000382727	ENST00000382727		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000382727	ENST00000263791		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000382727	ENST00000560648		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000382727	ENST00000559311		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000263791	ENST00000559624		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000263791	ENST00000382727		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
In-frame	ENST00000263791	ENST00000263791		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000263791	ENST00000560648		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
5CDS-intron	ENST00000263791	ENST00000559311		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000560648	ENST00000559624		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000560648	ENST00000382727		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000560648	ENST00000263791		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-intron	ENST00000560648	ENST00000560648		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-intron	ENST00000560648	ENST00000559311		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000559311	ENST00000559624		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000559311	ENST00000382727		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-3CDS	ENST00000559311	ENST00000263791		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-intron	ENST00000559311	ENST00000560648		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-intron	ENST00000559311	ENST00000559311		ChiTaRS3.1			AB037759	EIF2AK4	chr15	40241401	-	EIF2AK4	chr15	40246119	+
intron-intron	ENST00000284987	ENST00000263956		ChiTaRS3.1			BQ380594	ADAMTS5	chr21	28334672	+	GTF3C3	chr2	197660496	-
intron-intron	ENST00000284987	ENST00000409364		ChiTaRS3.1			BQ380594	ADAMTS5	chr21	28334672	+	GTF3C3	chr2	197660496	-
intron-intron	ENST00000284987	ENST00000470386		ChiTaRS3.1			BQ380594	ADAMTS5	chr21	28334672	+	GTF3C3	chr2	197660496	-
intron-3CDS	ENST00000441210	ENST00000369005		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000513429		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000515273		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000515603		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000453444		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000358010		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000334433		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369001		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369000		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000360561		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000368999		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000369004		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000441210	ENST00000260733		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-intron	ENST00000441210	ENST00000493951		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369005		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000513429		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000515273		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000515603		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000453444		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000358010		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000334433		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369001		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369000		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000360561		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000368999		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000369004		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000457433	ENST00000260733		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000457433	ENST00000493951		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369005		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000513429		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000515273		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000515603		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000453444		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000358010		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000334433		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369001		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369000		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000360561		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000368999		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000369004		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000271064	ENST00000260733		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000271064	ENST00000493951		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369005		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000513429		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000515273		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000515603		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000453444		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000358010		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000334433		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369001		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369000		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000360561		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000368999		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000369004		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000537531	ENST00000260733		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-intron	ENST00000537531	ENST00000493951		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369005		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000513429		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000515273		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000515603		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000453444		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000358010		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000334433		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369001		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369000		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000360561		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000368999		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000369004		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-3CDS	ENST00000481165	ENST00000260733		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
3UTR-intron	ENST00000481165	ENST00000493951		ChiTaRS3.1			BM314429	TINAGL1	chr1	32053212	-	TACC2	chr10	123971146	-
intron-3CDS	ENST00000237654	ENST00000237654		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-3CDS	ENST00000237654	ENST00000537948		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-intron	ENST00000237654	ENST00000504697		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-3CDS	ENST00000537948	ENST00000237654		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-3CDS	ENST00000537948	ENST00000537948		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-intron	ENST00000537948	ENST00000504697		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-3CDS	ENST00000504697	ENST00000237654		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-3CDS	ENST00000504697	ENST00000537948		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
intron-intron	ENST00000504697	ENST00000504697		ChiTaRS3.1			AW843279	CCNI	chr4	77969535	+	CCNI	chr4	77976440	-
3UTR-3UTR	ENST00000334982	ENST00000370355		ChiTaRS3.1			CD365669	NAA20	chr20	20013918	-	SCD	chr10	102124483	-
3UTR-3UTR	ENST00000484480	ENST00000370355		ChiTaRS3.1			CD365669	NAA20	chr20	20013918	-	SCD	chr10	102124483	-
3UTR-3UTR	ENST00000310450	ENST00000370355		ChiTaRS3.1			CD365669	NAA20	chr20	20013918	-	SCD	chr10	102124483	-
3UTR-3UTR	ENST00000398602	ENST00000370355		ChiTaRS3.1			CD365669	NAA20	chr20	20013918	-	SCD	chr10	102124483	-
intron-3UTR	ENST00000380456	ENST00000534336		ChiTaRS3.1			BG548829	RGL3	chr19	11510610	+	MALAT1	chr11	65266540	+
intron-3UTR	ENST00000568628	ENST00000534336		ChiTaRS3.1			BG548829	RGL3	chr19	11510610	+	MALAT1	chr11	65266540	+
intron-3UTR	ENST00000393423	ENST00000534336		ChiTaRS3.1			BG548829	RGL3	chr19	11510610	+	MALAT1	chr11	65266540	+
3UTR-intron	ENST00000374259	ENST00000370056		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-intron	ENST00000374259	ENST00000527011		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-intron	ENST00000374259	ENST00000544443		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-intron	ENST00000374259	ENST00000415432		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-intron	ENST00000374259	ENST00000343258		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-intron	ENST00000374259	ENST00000371846		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000370056		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000527011		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000544443		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000415432		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000343258		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000466874	ENST00000371846		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000370056		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000527011		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000544443		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000415432		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000343258		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
intron-intron	ENST00000341558	ENST00000371846		ChiTaRS3.1			AL691579	FOXO4	chrX	70323213	-	VAV3	chr1	108410638	+
3UTR-3UTR	ENST00000392011	ENST00000392011		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000392011	ENST00000409212		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000392011	ENST00000344528		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-intron	ENST00000392011	ENST00000489601		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000409212	ENST00000392011		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000409212	ENST00000409212		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000409212	ENST00000344528		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-intron	ENST00000409212	ENST00000489601		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000344528	ENST00000392011		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000344528	ENST00000409212		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-3UTR	ENST00000344528	ENST00000344528		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
3UTR-intron	ENST00000344528	ENST00000489601		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
intron-3UTR	ENST00000489601	ENST00000392011		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
intron-3UTR	ENST00000489601	ENST00000409212		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
intron-3UTR	ENST00000489601	ENST00000344528		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
intron-intron	ENST00000489601	ENST00000489601		ChiTaRS3.1			AA493349	SH3BP4	chr2	235963223	+	SH3BP4	chr2	235963267	-
intron-3CDS	ENST00000368073	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000368073	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000326837	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000326837	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000368074	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000368074	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000608310	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000608310	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000556710	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000556710	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000610139	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000610139	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000475733	ENST00000412830		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-3CDS	ENST00000475733	ENST00000541166		ChiTaRS3.1			N85859	DCAF8	chr1	160213792	-	PWP1	chr12	108097462	+
intron-intron	ENST00000389394	ENST00000373233		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000389394	ENST00000309279		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000389394	ENST00000373222		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000389394	ENST00000480022		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000237449	ENST00000373233		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000237449	ENST00000309279		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000237449	ENST00000373222		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000237449	ENST00000480022		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000398278	ENST00000373233		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000398278	ENST00000309279		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000398278	ENST00000373222		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000398278	ENST00000480022		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000468661	ENST00000373233		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000468661	ENST00000309279		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000468661	ENST00000373222		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000468661	ENST00000480022		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000602588	ENST00000373233		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000602588	ENST00000309279		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000602588	ENST00000373222		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000602588	ENST00000480022		ChiTaRS3.1			BF367299	DNAH6	chr2	84916104	+	CHD6	chr20	40242559	-
intron-intron	ENST00000487338	ENST00000392882		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000358655		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000355338		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000344102		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000557135		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000556645		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000487338	ENST00000554084		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000392882		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000358655		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000355338		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000344102		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000557135		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000556645		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000498046	ENST00000554084		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000392882		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000358655		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000355338		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000344102		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000557135		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000556645		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000339986	ENST00000554084		ChiTaRS3.1			AW794469	ZNF695	chr1	247163785	-	WARS	chr14	100817841	-
intron-intron	ENST00000274242	ENST00000309955		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000443227		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000341222		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000340870		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000355558		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000341582		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000342795		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000395148		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000423241		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000490965		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000440180		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000457277		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000494258		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000274242	ENST00000479953		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000309955		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000443227		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000341222		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000340870		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000355558		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000341582		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000342795		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000395148		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000423241		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000490965		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000440180		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000457277		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000494258		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000509877	ENST00000479953		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000309955		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000443227		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000341222		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000340870		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000355558		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000341582		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000342795		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000395148		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000423241		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000490965		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000440180		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000457277		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000494258		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000504562	ENST00000479953		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000309955		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000443227		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000341222		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000340870		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000355558		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000341582		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000342795		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000395148		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000423241		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000490965		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000440180		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000457277		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000494258		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000508493	ENST00000479953		ChiTaRS3.1			AW136069	RPL37	chr5	40832612	+	CFLAR	chr2	201981714	-
intron-intron	ENST00000255681	ENST00000255681		ChiTaRS3.1			BG956289	MACROD1	chr11	63783412	-	MACROD1	chr11	63884179	-
intron-intron	ENST00000255681	ENST00000538595		ChiTaRS3.1			BG956289	MACROD1	chr11	63783412	-	MACROD1	chr11	63884179	-
intron-intron	ENST00000538595	ENST00000255681		ChiTaRS3.1			BG956289	MACROD1	chr11	63783412	-	MACROD1	chr11	63884179	-
intron-intron	ENST00000538595	ENST00000538595		ChiTaRS3.1			BG956289	MACROD1	chr11	63783412	-	MACROD1	chr11	63884179	-
intron-3CDS	ENST00000406606	ENST00000406606		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000406606	ENST00000371850		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000406606	ENST00000371851		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-intron	ENST00000406606	ENST00000486113		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371850	ENST00000406606		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371850	ENST00000371850		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371850	ENST00000371851		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-intron	ENST00000371850	ENST00000486113		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371851	ENST00000406606		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371851	ENST00000371850		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000371851	ENST00000371851		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-intron	ENST00000371851	ENST00000486113		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000486113	ENST00000406606		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000486113	ENST00000371850		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-3CDS	ENST00000486113	ENST00000371851		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
intron-intron	ENST00000486113	ENST00000486113		ChiTaRS3.1			BE925899	VAV2	chr9	136804276	+	VAV2	chr9	136674219	-
3UTR-3CDS	ENST00000326974	ENST00000326974		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-3CDS	ENST00000326974	ENST00000244670		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-intron	ENST00000326974	ENST00000332245		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-3CDS	ENST00000244670	ENST00000326974		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-3CDS	ENST00000244670	ENST00000244670		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-intron	ENST00000244670	ENST00000332245		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-3CDS	ENST00000332245	ENST00000326974		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-3CDS	ENST00000332245	ENST00000244670		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
3UTR-intron	ENST00000332245	ENST00000332245		ChiTaRS3.1			BE254559	KLHDC3	chr6	42988506	+	KLHDC3	chr6	42985403	+
In-frame	ENST00000346169	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000346169	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000346169	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000414031	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000414031	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000414031	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000392537	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000392537	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000392537	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000382330	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000382330	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000382330	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-3CDS	ENST00000350481	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-5UTR	ENST00000350481	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5UTR-intron	ENST00000350481	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000352767	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000352767	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000352767	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000427845	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000427845	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000427845	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000342981	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000342981	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000342981	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000319274	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000319274	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000319274	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000424196	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000424196	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000424196	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
In-frame	ENST00000411531	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-5UTR	ENST00000411531	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
5CDS-intron	ENST00000411531	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-3CDS	ENST00000441154	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-5UTR	ENST00000441154	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000441154	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-3CDS	ENST00000434061	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-5UTR	ENST00000434061	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000434061	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-3CDS	ENST00000435046	ENST00000346169		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-5UTR	ENST00000435046	ENST00000414031		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000392537		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000382330		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000350481		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000352767		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000427845		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000342981		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000319274		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000424196		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000411531		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000441154		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000434061		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-intron	ENST00000435046	ENST00000435046		ChiTaRS3.1			DA453269	EIF4G1	chr3	184037517	+	EIF4G1	chr3	184033920	+
intron-3CDS	ENST00000379300	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379300	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379300	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379300	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000379300	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000379300	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000356436	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000356436	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000356436	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000356436	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000356436	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000356436	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379307	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379307	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379307	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000379307	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000379307	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000379307	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000343141	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000343141	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000343141	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000343141	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000343141	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000343141	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607658	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607658	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607658	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607658	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000607658	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000607658	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607532	ENST00000379300		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607532	ENST00000356436		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607532	ENST00000379307		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-3CDS	ENST00000607532	ENST00000343141		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000607532	ENST00000607658		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000607532	ENST00000607532		ChiTaRS3.1			BU608959	TBC1D7	chr6	13303744	+	TBC1D7	chr6	13305419	-
intron-intron	ENST00000441964	ENST00000283632		ChiTaRS3.1			BU679409	POMGNT2	chr3	43120921	+	RMND5A	chr2	87450943	+
intron-intron	ENST00000441964	ENST00000472843		ChiTaRS3.1			BU679409	POMGNT2	chr3	43120921	+	RMND5A	chr2	87450943	+
intron-intron	ENST00000344697	ENST00000283632		ChiTaRS3.1			BU679409	POMGNT2	chr3	43120921	+	RMND5A	chr2	87450943	+
intron-intron	ENST00000344697	ENST00000472843		ChiTaRS3.1			BU679409	POMGNT2	chr3	43120921	+	RMND5A	chr2	87450943	+
3UTR-intron	ENST00000265881	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000265881	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000544196	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000539754	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000539275	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000538791	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000379061		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
3UTR-intron	ENST00000544507	ENST00000457710		ChiTaRS3.1			AA528039	REXO2	chr11	114320827	-	SARM1	chr17	26714706	-
intron-intron	ENST00000409063	ENST00000479054		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000409063	ENST00000345716		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000409063	ENST00000488380		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000409063	ENST00000420808		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000409063	ENST00000464280		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000312428	ENST00000479054		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000312428	ENST00000345716		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000312428	ENST00000488380		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000312428	ENST00000420808		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000312428	ENST00000464280		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000410072	ENST00000479054		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000410072	ENST00000345716		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000410072	ENST00000488380		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000410072	ENST00000420808		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
5CDS-intron	ENST00000410072	ENST00000464280		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000484183	ENST00000479054		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000484183	ENST00000345716		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000484183	ENST00000488380		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000484183	ENST00000420808		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-intron	ENST00000484183	ENST00000464280		ChiTaRS3.1			DB227899	DNAH7	chr2	196922778	-	NISCH	chr3	52518014	+
intron-3UTR	ENST00000262139	ENST00000262139		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-5UTR	ENST00000262139	ENST00000589459		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-intron	ENST00000262139	ENST00000546360		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-3UTR	ENST00000589459	ENST00000262139		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-5UTR	ENST00000589459	ENST00000589459		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-intron	ENST00000589459	ENST00000546360		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-3UTR	ENST00000546360	ENST00000262139		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-5UTR	ENST00000546360	ENST00000589459		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-intron	ENST00000546360	ENST00000546360		ChiTaRS3.1			BI868589	WIPI1	chr17	66417674	+	WIPI1	chr17	66417651	-
intron-3CDS	ENST00000395952	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000395952	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000375842	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000375842	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000440843	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000440843	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000471644	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000471644	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000538874	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000538874	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550556	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550556	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547161	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547161	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000464268	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000464268	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000444818	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000444818	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000551038	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000551038	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549543	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549543	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000494438	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000494438	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000413853	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000413853	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549853	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549853	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547325	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000547325	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000488103	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000488103	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000457366	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000457366	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000548592	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000548592	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000482058	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000482058	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000446529	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000446529	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000552042	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000552042	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000546528	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000546528	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000475067	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000475067	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000429735	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000429735	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549722	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000549722	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550719	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000550719	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000495335	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000495335	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000432617	ENST00000373206		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3CDS	ENST00000432617	ENST00000373204		ChiTaRS3.1			AI989789	ABHD16A	chr6	3034709	+	AGO1	chr1	36379471	-
intron-3UTR	ENST00000378609	ENST00000378609		ChiTaRS3.1			BI862769	GNB1	chr1	1717496	+	GNB1	chr1	1717418	-
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			BI862769	GNB1	chr1	1717496	+	GNB1	chr1	1717418	-
intron-3UTR	ENST00000472614	ENST00000378609		ChiTaRS3.1			BI862769	GNB1	chr1	1717496	+	GNB1	chr1	1717418	-
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			BI862769	GNB1	chr1	1717496	+	GNB1	chr1	1717418	-
3UTR-3CDS	ENST00000215957	ENST00000215957		ChiTaRS3.1			BG946379	MICALL1	chr22	38337495	-	MICALL1	chr22	38336725	+
3UTR-3UTR	ENST00000215957	ENST00000402631		ChiTaRS3.1			BG946379	MICALL1	chr22	38337495	-	MICALL1	chr22	38336725	+
3UTR-3CDS	ENST00000402631	ENST00000215957		ChiTaRS3.1			BG946379	MICALL1	chr22	38337495	-	MICALL1	chr22	38336725	+
3UTR-3UTR	ENST00000402631	ENST00000402631		ChiTaRS3.1			BG946379	MICALL1	chr22	38337495	-	MICALL1	chr22	38336725	+
intron-intron	ENST00000335742	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000335742	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000335742	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000261509	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000261509	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000261509	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000505667	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000505667	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000505667	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000333488	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000333488	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000333488	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000512127	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000512127	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000512127	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000507735	ENST00000337211		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000507735	ENST00000369847		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000507735	ENST00000490296		ChiTaRS3.1			AI911829	PALLD	chr4	169565990	+	PCGF6	chr10	105077069	+
intron-intron	ENST00000537971	ENST00000537971		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000537971	ENST00000011898		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000537971	ENST00000407263		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000537971	ENST00000492305		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000011898	ENST00000537971		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000011898	ENST00000011898		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000011898	ENST00000407263		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000011898	ENST00000492305		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000407263	ENST00000537971		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000407263	ENST00000011898		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000407263	ENST00000407263		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000407263	ENST00000492305		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000492305	ENST00000537971		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000492305	ENST00000011898		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000492305	ENST00000407263		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000492305	ENST00000492305		ChiTaRS3.1			BQ184979	TSPAN9	chr12	3316416	+	TSPAN9	chr12	3316380	-
intron-intron	ENST00000324379	ENST00000324379		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000324379	ENST00000356511		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000324379	ENST00000470213		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000324379	ENST00000372830		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000324379	ENST00000480169		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000356511	ENST00000324379		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000356511	ENST00000356511		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000356511	ENST00000470213		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000356511	ENST00000372830		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000356511	ENST00000480169		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000470213	ENST00000324379		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000470213	ENST00000356511		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000470213	ENST00000470213		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000470213	ENST00000372830		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000470213	ENST00000480169		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000372830	ENST00000324379		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000372830	ENST00000356511		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000372830	ENST00000470213		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000372830	ENST00000372830		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000372830	ENST00000480169		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000480169	ENST00000324379		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000480169	ENST00000356511		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000480169	ENST00000470213		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000480169	ENST00000372830		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000480169	ENST00000480169		ChiTaRS3.1			BF948149	PPIE	chr1	40220792	+	PPIE	chr1	40221233	-
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF849519	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF849519	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF849519	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF849519	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-3CDS	ENST00000307790	ENST00000337147		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000367075		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000392177		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000307790	ENST00000476189		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000337147		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000367075		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000392177		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000397771	ENST00000476189		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000337147		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000367075		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000392177		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000542393	ENST00000476189		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000337147		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000367075		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000392177		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000478812	ENST00000476189		ChiTaRS3.1			BE140559	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-5UTR	ENST00000390237	ENST00000485803		ChiTaRS3.1			AW842189	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-5UTR	ENST00000390237	ENST00000373016		ChiTaRS3.1			AW842189	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-3CDS	ENST00000254942	ENST00000535401		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000254942	ENST00000535185		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000254942	ENST00000299964		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000254942	ENST00000541754		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000254942	ENST00000542647		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000254942	ENST00000545255		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-3CDS	ENST00000603068	ENST00000535401		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000603068	ENST00000535185		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000603068	ENST00000299964		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000603068	ENST00000541754		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000603068	ENST00000542647		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000603068	ENST00000545255		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-3CDS	ENST00000569611	ENST00000535401		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000569611	ENST00000535185		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000569611	ENST00000299964		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000569611	ENST00000541754		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000569611	ENST00000542647		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000569611	ENST00000545255		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-3CDS	ENST00000567296	ENST00000535401		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000567296	ENST00000535185		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000567296	ENST00000299964		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000567296	ENST00000541754		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000567296	ENST00000542647		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000567296	ENST00000545255		ChiTaRS3.1			BF913499	TERF2	chr16	69419618	+	NNMT	chr11	114183064	-
intron-intron	ENST00000462138	ENST00000368854		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000462138	ENST00000241305		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000423525	ENST00000368854		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000423525	ENST00000241305		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000461139	ENST00000368854		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000461139	ENST00000241305		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000423516	ENST00000368854		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000423516	ENST00000241305		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000296289	ENST00000368854		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-intron	ENST00000296289	ENST00000241305		ChiTaRS3.1			AW880069	TKT	chr3	53259866	+	CPXM2	chr10	125537690	+
intron-3CDS	ENST00000534358	ENST00000252674		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-3CDS	ENST00000389506	ENST00000252674		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-3CDS	ENST00000354520	ENST00000252674		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-3CDS	ENST00000420751	ENST00000252674		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			DQ224340	KMT2A	chr11	118353218	+	MLLT1	chr19	6230726	-
5UTR-5UTR	ENST00000447654	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000447654	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000447654	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000447654	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000447654	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-3UTR	ENST00000447654	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000447654	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000401473	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000401473	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000401473	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000401473	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000401473	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-3UTR	ENST00000401473	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000401473	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000311487	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000311487	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000311487	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000311487	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000311487	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-3UTR	ENST00000311487	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000311487	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000347617	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000347617	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000347617	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000347617	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000347617	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-3UTR	ENST00000347617	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000347617	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000395004	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000395004	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000395004	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000395004	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-5UTR	ENST00000395004	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-3UTR	ENST00000395004	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
5UTR-intron	ENST00000395004	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000478214	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000478214	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000478214	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-intron	ENST00000478214	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000478214	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-3UTR	ENST00000478214	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-intron	ENST00000478214	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000374116	ENST00000447654		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000374116	ENST00000401473		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000374116	ENST00000311487		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-intron	ENST00000374116	ENST00000347617		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-5UTR	ENST00000374116	ENST00000395004		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-3UTR	ENST00000374116	ENST00000478214		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-intron	ENST00000374116	ENST00000374116		ChiTaRS3.1			BG331249	HMGA1	chr6	34204668	-	HMGA1	chr6	34204999	+
intron-intron	ENST00000252744	ENST00000252744		ChiTaRS3.1			BE768859	ZSWIM6	chr5	60686471	+	ZSWIM6	chr5	60674670	+
intron-3UTR	ENST00000403295	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000403295	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-3UTR	ENST00000402135	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000402135	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-3UTR	ENST00000233741	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000233741	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-3UTR	ENST00000403676	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000403676	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-3UTR	ENST00000540646	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000540646	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-3UTR	ENST00000481670	ENST00000222747		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000481670	ENST00000415871		ChiTaRS3.1			CA945069	FANCL	chr2	58390092	-	TSPAN12	chr7	120427652	-
intron-intron	ENST00000360876	ENST00000486901		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-intron	ENST00000360876	ENST00000374695		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-3UTR	ENST00000360876	ENST00000430507		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-intron	ENST00000397011	ENST00000486901		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-intron	ENST00000397011	ENST00000374695		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-3UTR	ENST00000397011	ENST00000430507		ChiTaRS3.1			AW855179	EIF3B	chr7	2405457	-	HSPG2	chr1	22178654	-
intron-intron	ENST00000377815	ENST00000377767		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000377780		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000545453		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000377815	ENST00000475871		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000377767		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000377780		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000545453		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000390667	ENST00000475871		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000377767		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000377780		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000545453		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000464754	ENST00000475871		ChiTaRS3.1			BE813339	BORA	chr13	73329118	-	DIS3	chr13	73337200	-
intron-intron	ENST00000304749	ENST00000530069		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
intron-5UTR	ENST00000304749	ENST00000349015		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
intron-intron	ENST00000304749	ENST00000531881		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
intron-intron	ENST00000398402	ENST00000530069		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
intron-5UTR	ENST00000398402	ENST00000349015		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
intron-intron	ENST00000398402	ENST00000531881		ChiTaRS3.1			U37519	CST1	chr20	23728407	+	ALDH3B2	chr11	67442073	-
In-frame	ENST00000367182	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-3UTR	ENST00000367182	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000367182	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000367182	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000367182	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000367182	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-3UTR	ENST00000367182	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3CDS	ENST00000463049	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3UTR	ENST00000463049	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000463049	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000463049	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000463049	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000463049	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3UTR	ENST00000463049	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3CDS	ENST00000507825	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000507825	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000507825	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000507825	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000507825	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000507825	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000507825	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
In-frame	ENST00000454264	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-3UTR	ENST00000454264	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000454264	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000454264	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000454264	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-intron	ENST00000454264	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
5CDS-3UTR	ENST00000454264	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3CDS	ENST00000367183	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000367183	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367183	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367183	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367183	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367183	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000367183	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3CDS	ENST00000367180	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000367180	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367180	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367180	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367180	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000367180	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-3UTR	ENST00000367180	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3CDS	ENST00000391947	ENST00000367182		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3UTR	ENST00000391947	ENST00000463049		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000391947	ENST00000507825		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000391947	ENST00000454264		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000391947	ENST00000367183		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-intron	ENST00000391947	ENST00000367180		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
3UTR-3UTR	ENST00000391947	ENST00000391947		ChiTaRS3.1			BG008529	MDM4	chr1	204511966	-	MDM4	chr1	204513661	+
intron-intron	ENST00000301764	ENST00000457351		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000301764	ENST00000296487		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000301764	ENST00000323588		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000301764	ENST00000409502		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-intron	ENST00000450997	ENST00000457351		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000450997	ENST00000296487		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000450997	ENST00000323588		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000450997	ENST00000409502		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-intron	ENST00000451943	ENST00000457351		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000451943	ENST00000296487		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000451943	ENST00000323588		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000451943	ENST00000409502		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-intron	ENST00000538470	ENST00000457351		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000538470	ENST00000296487		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000538470	ENST00000323588		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000538470	ENST00000409502		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-intron	ENST00000545930	ENST00000457351		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000545930	ENST00000296487		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000545930	ENST00000323588		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-3UTR	ENST00000545930	ENST00000409502		ChiTaRS3.1			BE762649	DDB1	chr11	61101072	+	PPM1M	chr3	52283893	-
intron-intron	ENST00000569256	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000569256	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000569256	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569256	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569256	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569256	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569256	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000248098	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-3UTR	ENST00000248098	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-3UTR	ENST00000248098	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000248098	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000248098	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000248098	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000248098	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000562684	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-3UTR	ENST00000562684	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-3UTR	ENST00000562684	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000562684	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000562684	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000562684	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
3UTR-intron	ENST00000562684	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000561516	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000561516	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000561516	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000561516	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000561516	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000561516	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000561516	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382711	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000382711	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000382711	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382711	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382711	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382711	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382711	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569765	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000569765	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000569765	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569765	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569765	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569765	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000569765	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382710	ENST00000569256		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000382710	ENST00000248098		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-3UTR	ENST00000382710	ENST00000562684		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382710	ENST00000561516		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382710	ENST00000382711		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382710	ENST00000569765		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000382710	ENST00000382710		ChiTaRS3.1			CN360349	HN1L	chr16	1750836	-	HN1L	chr16	1750532	+
intron-intron	ENST00000261381	ENST00000398519		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000261381	ENST00000314028		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000261381	ENST00000392334		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000261381	ENST00000578904		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000568226	ENST00000398519		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000568226	ENST00000314028		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000568226	ENST00000392334		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000568226	ENST00000578904		ChiTaRS3.1			BI021289	XYLT1	chr16	17268009	+	CSNK1D	chr17	80228969	-
intron-intron	ENST00000268099	ENST00000398519		ChiTaRS3.1			BM873809	SCAMP2	chr15	75137462	-	CSNK1D	chr17	80200623	-
intron-3UTR	ENST00000268099	ENST00000314028		ChiTaRS3.1			BM873809	SCAMP2	chr15	75137462	-	CSNK1D	chr17	80200623	-
intron-intron	ENST00000268099	ENST00000392334		ChiTaRS3.1			BM873809	SCAMP2	chr15	75137462	-	CSNK1D	chr17	80200623	-
intron-intron	ENST00000268099	ENST00000578904		ChiTaRS3.1			BM873809	SCAMP2	chr15	75137462	-	CSNK1D	chr17	80200623	-
Frame-shit	ENST00000265081	ENST00000265081		ChiTaRS3.1			BE080139	MSH3	chr5	80037367	+	MSH3	chr5	80021268	+
5CDS-3UTR	ENST00000265081	ENST00000512258		ChiTaRS3.1			BE080139	MSH3	chr5	80037367	+	MSH3	chr5	80021268	+
3UTR-3CDS	ENST00000512258	ENST00000265081		ChiTaRS3.1			BE080139	MSH3	chr5	80037367	+	MSH3	chr5	80021268	+
3UTR-3UTR	ENST00000512258	ENST00000512258		ChiTaRS3.1			BE080139	MSH3	chr5	80037367	+	MSH3	chr5	80021268	+
intron-intron	ENST00000448612	ENST00000381567		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000448612	ENST00000467626		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000448612	ENST00000381566		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000423258	ENST00000381567		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000423258	ENST00000467626		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000423258	ENST00000381566		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000333572	ENST00000381567		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000333572	ENST00000467626		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000333572	ENST00000381566		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000546525	ENST00000381567		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000546525	ENST00000467626		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000546525	ENST00000381566		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000420344	ENST00000381567		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000420344	ENST00000467626		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000420344	ENST00000381566		ChiTaRS3.1			AK054789	WDR27	chr6	169953164	-	CRLF2	chrY	1455478	-
intron-intron	ENST00000428869	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000428869	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000428869	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000428869	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000428869	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000431965	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000431965	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000431965	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000431965	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000431965	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000256425	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000256425	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000256425	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000256425	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000256425	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000588444	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000588444	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000588444	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000588444	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000588444	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000436348	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000436348	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000436348	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000436348	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000436348	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000398439	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000398439	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000398439	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000398439	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000398439	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000587291	ENST00000278379		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000587291	ENST00000395750		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000587291	ENST00000395753		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000587291	ENST00000606205		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000587291	ENST00000479543		ChiTaRS3.1			BF362149	MRO	chr18	48335683	-	SLC1A2	chr11	35385322	+
intron-intron	ENST00000283415	ENST00000393240		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000283415	ENST00000261205		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000283415	ENST00000457153		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000283415	ENST00000552744		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000283415	ENST00000549454		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000393240		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000503252	ENST00000261205		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3UTR	ENST00000503252	ENST00000457153		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000552744		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-intron	ENST00000503252	ENST00000549454		ChiTaRS3.1			AV729999	LPCAT1	chr5	1465876	+	SYT1	chr12	79845330	+
intron-3CDS	ENST00000398519	ENST00000535572		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000398519	ENST00000537687		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000398519	ENST00000315939		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000398519	ENST00000447667		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000398519	ENST00000530271		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000398519	ENST00000540360		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000398519	ENST00000340908		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000398519	ENST00000574564		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000314028	ENST00000535572		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000314028	ENST00000537687		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000314028	ENST00000315939		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000314028	ENST00000447667		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000314028	ENST00000530271		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000314028	ENST00000540360		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000314028	ENST00000340908		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000314028	ENST00000574564		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000392334	ENST00000535572		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000392334	ENST00000537687		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000392334	ENST00000315939		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000392334	ENST00000447667		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000392334	ENST00000530271		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000392334	ENST00000540360		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000392334	ENST00000340908		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000392334	ENST00000574564		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000578904	ENST00000535572		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000578904	ENST00000537687		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3CDS	ENST00000578904	ENST00000315939		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000578904	ENST00000447667		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000578904	ENST00000530271		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000578904	ENST00000540360		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000578904	ENST00000340908		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-intron	ENST00000578904	ENST00000574564		ChiTaRS3.1			BE837509	CSNK1D	chr17	80218223	-	WNK1	chr12	994278	+
intron-3UTR	ENST00000313486	ENST00000425081		ChiTaRS3.1			AA578189	PITPNA	chr17	1421404	-	PITPNA-AS1	chr17	1421353	+
intron-3UTR	ENST00000539476	ENST00000425081		ChiTaRS3.1			AA578189	PITPNA	chr17	1421404	-	PITPNA-AS1	chr17	1421353	+
intron-intron	ENST00000258349	ENST00000540661		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000258349	ENST00000381801		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000258349	ENST00000482345		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367696	ENST00000540661		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367696	ENST00000381801		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367696	ENST00000482345		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367694	ENST00000540661		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367694	ENST00000381801		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-intron	ENST00000367694	ENST00000482345		ChiTaRS3.1			BE147849	RC3H1	chr1	173914078	+	MTMR6	chr13	25852367	+
intron-3UTR	ENST00000317133	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000317133	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000317133	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000317133	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000317133	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000317133	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375741	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375741	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375741	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375741	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375741	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375741	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375739	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375739	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375739	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375739	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375739	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375739	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000370623	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000370623	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000370623	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000370623	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000370623	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000370623	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000544132	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000544132	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000544132	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000544132	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000544132	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000544132	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000218789	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000218789	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000218789	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000218789	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000218789	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000218789	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375736	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375736	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375736	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375736	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375736	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375736	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000426073	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000426073	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000426073	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000426073	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000426073	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000426073	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375737	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375737	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375737	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375737	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375737	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375737	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375723	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000375723	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375723	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375723	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375723	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000375723	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000478679	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000478679	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000478679	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000478679	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000478679	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000478679	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000483189	ENST00000379717		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-3UTR	ENST00000483189	ENST00000355467		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000483189	ENST00000494548		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000483189	ENST00000556601		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000483189	ENST00000416005		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000483189	ENST00000413371		ChiTaRS3.1			AW867789	ARHGEF7	chr13	111928582	-	ZNF512	chr2	27845009	+
intron-intron	ENST00000368732	ENST00000521850		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000368732	ENST00000517575		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000368732	ENST00000593851		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000368733	ENST00000521850		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000368733	ENST00000517575		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000368733	ENST00000593851		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000477801	ENST00000521850		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000477801	ENST00000517575		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-intron	ENST00000477801	ENST00000593851		ChiTaRS3.1			BI022059	S100A8	chr1	153363549	+	C5orf58	chr5	169677871	-
intron-3UTR	ENST00000240922	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000240922	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000240922	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000477813	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000477813	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000477813	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000497525	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000497525	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000497525	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000497255	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000497255	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000497255	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000493454	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000493454	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000493454	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000493900	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000493900	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000493900	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-3UTR	ENST00000467022	ENST00000380821		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000467022	ENST00000461041		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
intron-intron	ENST00000467022	ENST00000380799		ChiTaRS3.1			AA280259	NAA50	chr3	113454753	-	SNAPC3	chr9	15460600	+
3UTR-3UTR	ENST00000520810	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-3UTR	ENST00000520810	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000520810	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000520810	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000416505	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000416505	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000416505	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000416505	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000519735	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000519735	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000519735	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000519735	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000520835	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000520835	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000520835	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000520835	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-3UTR	ENST00000379708	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-3UTR	ENST00000379708	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000379708	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000379708	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000518983	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000518983	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000518983	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000518983	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-3UTR	ENST00000522147	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-3UTR	ENST00000522147	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000522147	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
3UTR-intron	ENST00000522147	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000522785	ENST00000263280		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-3UTR	ENST00000522785	ENST00000391910		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000522785	ENST00000539396		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000522785	ENST00000594357		ChiTaRS3.1			N98439	IKBKB	chr8	42189070	-	STRN4	chr19	47223266	+
intron-intron	ENST00000220849	ENST00000533902		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000220849	ENST00000280258		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000220849	ENST00000441050		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000220849	ENST00000531521		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519030	ENST00000533902		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519030	ENST00000280258		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519030	ENST00000441050		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519030	ENST00000531521		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519517	ENST00000533902		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519517	ENST00000280258		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519517	ENST00000441050		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000519517	ENST00000531521		ChiTaRS3.1			BF799939	EIF3E	chr8	109240524	+	PRSS23	chr11	86519699	-
intron-intron	ENST00000375541	ENST00000539409		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-5UTR	ENST00000375541	ENST00000337682		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000375541	ENST00000454658		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000375541	ENST00000395766		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-5UTR	ENST00000375541	ENST00000542983		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000375541	ENST00000536836		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000467938	ENST00000539409		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-5UTR	ENST00000467938	ENST00000337682		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000467938	ENST00000454658		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000467938	ENST00000395766		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-5UTR	ENST00000467938	ENST00000542983		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
intron-intron	ENST00000467938	ENST00000536836		ChiTaRS3.1			CD657772	CROCC	chr1	17176771	-	FAM60A	chr12	31479070	-
3UTR-3UTR	ENST00000533507	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-3UTR	ENST00000533507	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000533507	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000533507	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000533507	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000533507	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-3UTR	ENST00000263774	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-3UTR	ENST00000263774	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000263774	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000263774	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000263774	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
3UTR-intron	ENST00000263774	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000529276	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000529276	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000529276	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000529276	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000529276	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000529276	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000528192	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000528192	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000528192	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000528192	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000528192	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000528192	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000534208	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000534208	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534208	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534208	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534208	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534208	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000534716	ENST00000533507		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-3UTR	ENST00000534716	ENST00000263774		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534716	ENST00000529276		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534716	ENST00000528192		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534716	ENST00000534208		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000534716	ENST00000534716		ChiTaRS3.1			CA450349	NDUFS3	chr11	47606039	-	NDUFS3	chr11	47605959	+
intron-intron	ENST00000223095	ENST00000515359		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000308775		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000541308		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000539901		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000545947		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000538711		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000223095	ENST00000479935		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000515359		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000308775		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000541308		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000539901		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000545947		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000538711		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000445463	ENST00000479935		ChiTaRS3.1			CN267989	SERPINE1	chr7	100772208	+	DAG1	chr3	49524587	+
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			CN418139	RTN4	chr2	55276992	-	RTN4	chr2	55277362	-
intron-intron	ENST00000465409	ENST00000532226		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000525151		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000438298		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000442928		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000532353		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000420651		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000449449		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000456352		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000440001		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000440395		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000606892		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000465409	ENST00000607066		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000532226		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000525151		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000438298		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000442928		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000532353		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000420651		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000449449		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000456352		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000440001		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000440395		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000606892		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000369937	ENST00000607066		ChiTaRS3.1			BF930069	CUEDC2	chr10	104189184	-	TRAF3IP2-AS1	chr6	111808164	+
intron-intron	ENST00000395131	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000374606	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000374610	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000374607	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000463584	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000445559	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000452658	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000448594	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000547952	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000491095	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000412289	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000425878	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000442285	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000552711	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000474406	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000431830	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000432391	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000451970	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000547641	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000468094	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
3UTR-intron	ENST00000399385	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
3UTR-intron	ENST00000399383	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000383207	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
3UTR-intron	ENST00000548040	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
intron-intron	ENST00000482292	ENST00000555276		ChiTaRS3.1			AA234979	PFDN6	chr6	4490898	-	SYNJ2BP-COX16	chr14	70836918	+
5UTR-intron	ENST00000369550	ENST00000395514		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
5UTR-intron	ENST00000369550	ENST00000543643		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
5UTR-intron	ENST00000369550	ENST00000491895		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
5UTR-intron	ENST00000369550	ENST00000254299		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
5UTR-intron	ENST00000369550	ENST00000536224		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-intron	ENST00000475966	ENST00000395514		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-intron	ENST00000475966	ENST00000543643		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-intron	ENST00000475966	ENST00000491895		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-intron	ENST00000475966	ENST00000254299		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-intron	ENST00000475966	ENST00000536224		ChiTaRS3.1			BF798439	DKC1	chrX	153991139	-	GCH1	chr14	55349754	-
intron-3UTR	ENST00000354775	ENST00000394936		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
intron-3UTR	ENST00000354775	ENST00000394934		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
intron-3UTR	ENST00000538148	ENST00000394936		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
intron-3UTR	ENST00000538148	ENST00000394934		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
intron-3UTR	ENST00000461664	ENST00000394936		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
intron-3UTR	ENST00000461664	ENST00000394934		ChiTaRS3.1			BP391559	ALDH9A1	chr1	165638556	+	PSAP	chr10	73576501	-
5CDS-5UTR	ENST00000441802	ENST00000441802		ChiTaRS3.1			BP349659	FAT1	chr4	187627717	-	FAT1	chr4	187631002	-
5CDS-intron	ENST00000441802	ENST00000512347		ChiTaRS3.1			BP349659	FAT1	chr4	187627717	-	FAT1	chr4	187631002	-
intron-5UTR	ENST00000512347	ENST00000441802		ChiTaRS3.1			BP349659	FAT1	chr4	187627717	-	FAT1	chr4	187631002	-
intron-intron	ENST00000512347	ENST00000512347		ChiTaRS3.1			BP349659	FAT1	chr4	187627717	-	FAT1	chr4	187631002	-
intron-3UTR	ENST00000435819	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000435819	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000435819	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000435819	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000435819	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000435819	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000309881	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000309881	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000309881	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000309881	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000309881	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000309881	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000534394	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000534394	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000534394	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000534394	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000534394	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000534394	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000441109	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000441109	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000441109	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000441109	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000441109	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000441109	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000394788	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000394788	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000394788	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000394788	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000394788	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000394788	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000447544	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000447544	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000447544	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000447544	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000447544	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000447544	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000432207	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000432207	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000432207	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000432207	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000432207	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000432207	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000544133	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000544133	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000544133	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000544133	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000544133	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000544133	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000538969	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000538969	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000538969	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000538969	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000538969	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000538969	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000433696	ENST00000052754		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000433696	ENST00000425043		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000433696	ENST00000393155		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000433696	ENST00000228329		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-3UTR	ENST00000433696	ENST00000303320		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000552962		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000441303		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000420120		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000547568		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000456569		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000546370		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000546745		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000550099		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000551354		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000433696	ENST00000548768		ChiTaRS3.1			DR979449	CD36	chr7	80289884	-	DCN	chr12	91539474	+
intron-intron	ENST00000216639	ENST00000380490		ChiTaRS3.1			AA077909	VRK1	chr14	97329001	-	ALOX5AP	chr13	31318411	+
intron-3UTR	ENST00000216639	ENST00000479597		ChiTaRS3.1			AA077909	VRK1	chr14	97329001	-	ALOX5AP	chr13	31318411	+
intron-intron	ENST00000555067	ENST00000380490		ChiTaRS3.1			AA077909	VRK1	chr14	97329001	-	ALOX5AP	chr13	31318411	+
intron-3UTR	ENST00000555067	ENST00000479597		ChiTaRS3.1			AA077909	VRK1	chr14	97329001	-	ALOX5AP	chr13	31318411	+
intron-intron	ENST00000330430	ENST00000396153		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000371778		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000545823		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000472808		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000396153		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000371778		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000545823		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000472808		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000396153		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000371778		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000545823		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000472808		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000396153		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000371778		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000545823		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000472808		ChiTaRS3.1			BF963889	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000354590	ENST00000354590		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000354590	ENST00000594051		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-5UTR	ENST00000354590	ENST00000600990		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000594051	ENST00000354590		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000594051	ENST00000594051		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-5UTR	ENST00000594051	ENST00000600990		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000600990	ENST00000354590		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000600990	ENST00000594051		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-5UTR	ENST00000600990	ENST00000600990		ChiTaRS3.1			CN267839	ZBTB45	chr19	59029814	-	ZBTB45	chr19	59031098	+
intron-intron	ENST00000328252	ENST00000328252		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000328252		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000328252		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			BF367809	PAPPA	chr9	118926976	+	PAPPA	chr9	118927054	-
intron-intron	ENST00000277165	ENST00000277165		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000277165	ENST00000375389		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000277165	ENST00000340893		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000277165	ENST00000333936		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000277165	ENST00000475933		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000375389	ENST00000277165		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000375389	ENST00000375389		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000375389	ENST00000340893		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000375389	ENST00000333936		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000375389	ENST00000475933		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000340893	ENST00000277165		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000340893	ENST00000375389		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000340893	ENST00000340893		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000340893	ENST00000333936		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000340893	ENST00000475933		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000333936	ENST00000277165		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000333936	ENST00000375389		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000333936	ENST00000340893		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000333936	ENST00000333936		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000333936	ENST00000475933		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000475933	ENST00000277165		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000475933	ENST00000375389		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000475933	ENST00000340893		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000475933	ENST00000333936		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000475933	ENST00000475933		ChiTaRS3.1			BF948439	FAM120A	chr9	96322831	-	FAM120A	chr9	96322966	+
intron-intron	ENST00000297591	ENST00000537098		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000297591	ENST00000539778		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000297591	ENST00000566513		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000297591	ENST00000398040		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000437199	ENST00000537098		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000437199	ENST00000539778		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000437199	ENST00000566513		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000437199	ENST00000398040		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000421249	ENST00000537098		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000421249	ENST00000539778		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000421249	ENST00000566513		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000421249	ENST00000398040		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000523405	ENST00000537098		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000523405	ENST00000539778		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000523405	ENST00000566513		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
intron-intron	ENST00000523405	ENST00000398040		ChiTaRS3.1			AI816939	KIAA1429	chr8	95500932	+	CMIP	chr16	81730697	-
In-frame	ENST00000376070	ENST00000376070		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000376070	ENST00000376087		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000376070	ENST00000436985		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
5CDS-intron	ENST00000376070	ENST00000466890		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000376087	ENST00000376070		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000376087	ENST00000376087		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000376087	ENST00000436985		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
5CDS-intron	ENST00000376087	ENST00000466890		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000436985	ENST00000376070		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000436985	ENST00000376087		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
In-frame	ENST00000436985	ENST00000436985		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
5CDS-intron	ENST00000436985	ENST00000466890		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
intron-3CDS	ENST00000466890	ENST00000376070		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
intron-3CDS	ENST00000466890	ENST00000376087		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
intron-3CDS	ENST00000466890	ENST00000436985		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
intron-intron	ENST00000466890	ENST00000466890		ChiTaRS3.1			BM450509	ANKRD26	chr10	27311485	-	ANKRD26	chr10	27337911	-
intron-intron	ENST00000381815	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
intron-intron	ENST00000381831	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
intron-intron	ENST00000381839	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
intron-intron	ENST00000543717	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
intron-intron	ENST00000361093	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
intron-intron	ENST00000497313	ENST00000358901		ChiTaRS3.1			BE147859	GART	chr21	34891587	+	VCP	chr9	35070473	-
Frame-shit	ENST00000373823	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373823	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373823	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373808	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373808	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000436847	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000436847	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000449733	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000449733	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000412819	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000412819	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000394353	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000394353	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000341272	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000341272	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000545652	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000545652	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
Frame-shit	ENST00000373818	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
5CDS-intron	ENST00000373818	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000485767	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000485767	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373807	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373807	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373823		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373808		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000436847		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000449733		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000412819		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000394353		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000341272		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000545652		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3CDS	ENST00000373806	ENST00000373818		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000485767		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000373807		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-intron	ENST00000373806	ENST00000373806		ChiTaRS3.1			BF894459	GSN	chr9	124064372	-	GSN	chr9	124081086	-
intron-3UTR	ENST00000570565	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000570565	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000570565	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000570565	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000570565	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000442502	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000442502	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000442502	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000442502	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000442502	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000340813	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000340813	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000340813	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000340813	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000340813	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000451037	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000451037	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000451037	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000451037	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000451037	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000285273	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000285273	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000285273	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000285273	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000285273	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000571918	ENST00000262376		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000571918	ENST00000545171		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000571918	ENST00000590769		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-3UTR	ENST00000571918	ENST00000396658		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000571918	ENST00000585857		ChiTaRS3.1			AA323879	CA10	chr17	50117599	+	UBN1	chr16	4930336	+
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW861099	LAMC1	chr1	183048096	-	LAMC1	chr1	183003711	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW861099	LAMC1	chr1	183048096	-	LAMC1	chr1	183003711	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW861099	LAMC1	chr1	183048096	-	LAMC1	chr1	183003711	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW861099	LAMC1	chr1	183048096	-	LAMC1	chr1	183003711	+
5CDS-3UTR	ENST00000326003	ENST00000326003		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-intron	ENST00000326003	ENST00000597483		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-intron	ENST00000326003	ENST00000593997		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-3UTR	ENST00000326003	ENST00000595952		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-3UTR	ENST00000326003	ENST00000360617		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000597483	ENST00000326003		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-intron	ENST00000597483	ENST00000597483		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-intron	ENST00000597483	ENST00000593997		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000597483	ENST00000595952		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000597483	ENST00000360617		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000593997	ENST00000326003		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-intron	ENST00000593997	ENST00000597483		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-intron	ENST00000593997	ENST00000593997		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000593997	ENST00000595952		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3UTR	ENST00000593997	ENST00000360617		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-3UTR	ENST00000595952	ENST00000326003		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-intron	ENST00000595952	ENST00000597483		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-intron	ENST00000595952	ENST00000593997		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-3UTR	ENST00000595952	ENST00000595952		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
5CDS-3UTR	ENST00000595952	ENST00000360617		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
3UTR-3UTR	ENST00000360617	ENST00000326003		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
3UTR-intron	ENST00000360617	ENST00000597483		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
3UTR-intron	ENST00000360617	ENST00000593997		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
3UTR-3UTR	ENST00000360617	ENST00000595952		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
3UTR-3UTR	ENST00000360617	ENST00000360617		ChiTaRS3.1			AA226359	KLK3	chr19	51363332	+	KLK3	chr19	51363418	-
intron-3CDS	ENST00000468758	ENST00000372014		ChiTaRS3.1			M86029	MGAT5	chr2	135157743	+	MRPL14	chr6	44081609	-
intron-3CDS	ENST00000409645	ENST00000372014		ChiTaRS3.1			M86029	MGAT5	chr2	135157743	+	MRPL14	chr6	44081609	-
intron-3CDS	ENST00000281923	ENST00000372014		ChiTaRS3.1			M86029	MGAT5	chr2	135157743	+	MRPL14	chr6	44081609	-
intron-intron	ENST00000212355	ENST00000394023		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000212355	ENST00000550164		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000212355	ENST00000347471		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000212355	ENST00000267064		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000212355	ENST00000550859		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000370399	ENST00000394023		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000370399	ENST00000550164		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000370399	ENST00000347471		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000370399	ENST00000267064		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000370399	ENST00000550859		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000525962	ENST00000394023		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000525962	ENST00000550164		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000525962	ENST00000347471		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000525962	ENST00000267064		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000525962	ENST00000550859		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000468996	ENST00000394023		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000468996	ENST00000550164		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000468996	ENST00000347471		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000468996	ENST00000267064		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000468996	ENST00000550859		ChiTaRS3.1			BF998129	TGFBR3	chr1	92293810	+	SMARCC2	chr12	56575092	+
intron-intron	ENST00000535193	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000543771	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000381306	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000381309	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000442236	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000489243	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000536108	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000428870	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000401787	ENST00000390168		ChiTaRS3.1			AF116709	KDM4C	chr9	6827216	-	H19	chr11	2016793	-
intron-intron	ENST00000371222	ENST00000215882		ChiTaRS3.1			CD614309	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000451283		ChiTaRS3.1			CD614309	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000461267		ChiTaRS3.1			CD614309	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000399161	ENST00000396743		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000399161	ENST00000156084		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000399161	ENST00000376488		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000399161	ENST00000428668		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000399161	ENST00000484499		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000428368	ENST00000396743		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000428368	ENST00000156084		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000428368	ENST00000376488		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000428368	ENST00000428668		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000428368	ENST00000484499		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000407844	ENST00000396743		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000407844	ENST00000156084		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000407844	ENST00000376488		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000407844	ENST00000428668		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000407844	ENST00000484499		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000471668	ENST00000396743		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000471668	ENST00000156084		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000471668	ENST00000376488		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000471668	ENST00000428668		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
intron-intron	ENST00000471668	ENST00000484499		ChiTaRS3.1			BG010809	MYT1L	chr2	1853888	-	OTUD5	chrX	48804273	+
In-frame	ENST00000261637	ENST00000261637		ChiTaRS3.1			AA720539	UTP20	chr12	101779460	+	UTP20	chr12	101777417	-
intron-intron	ENST00000487500	ENST00000308724		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000487500	ENST00000397120		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000487500	ENST00000556277		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396467	ENST00000308724		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396467	ENST00000397120		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396467	ENST00000556277		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000352983	ENST00000308724		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000352983	ENST00000397120		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000352983	ENST00000556277		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396466	ENST00000308724		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396466	ENST00000397120		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396466	ENST00000556277		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396465	ENST00000308724		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396465	ENST00000397120		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000396465	ENST00000556277		ChiTaRS3.1			DA454229	RPL7	chr8	74205458	-	AP1G2	chr14	24031083	-
intron-intron	ENST00000336148	ENST00000476233		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000336148	ENST00000354667		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000336148	ENST00000356674		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000476233		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000354667		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000519348	ENST00000356674		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000476233		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000354667		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000297592	ENST00000356674		ChiTaRS3.1			BF907199	RAD54B	chr8	95416440	+	HNRNPA2B1	chr7	26233254	-
intron-intron	ENST00000229729	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000229729	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000544672	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000375562	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000465707	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000417894	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550821	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000550401	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000492911	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000453831	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000546461	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000551168	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495620	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000425238	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000548188	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549663	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000469478	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000415517	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547288	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547493	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000463111	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000383379	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000547684	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000549677	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000497745	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000366281	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000442152	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553147	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000553121	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000229729		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000544672		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000375562		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000465707		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000417894		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000550821		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000550401		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000492911		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000453831		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000546461		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000551168		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000495620		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000425238		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000548188		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000549663		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000469478		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000415517		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000547288		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000547493		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000463111		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000383379		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000547684		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000549677		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000497745		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000366281		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000442152		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000553147		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000553121		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
intron-intron	ENST00000495181	ENST00000495181		ChiTaRS3.1			BF509779	SLC44A4	chr6	3164590	+	SLC44A4	chr6	3164214	+
Frame-shit	ENST00000359282	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359282	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000603815	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000437231	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000447282	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000549863	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000359462	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000546463	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552296	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000552819	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000455667	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000439930	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000548933	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000341832		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000340677		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000407249		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
Frame-shit	ENST00000541275	ENST00000317673		ChiTaRS3.1			BC033069	PCBP2	chr12	53848593	+	CDK11B	chr1	1577121	-
intron-3CDS	ENST00000354452	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000354452	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000354452	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000354452	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000356073	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000356073	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000356073	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000356073	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000568673	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568673	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568673	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568673	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000457482	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000457482	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000457482	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000457482	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000543082	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000543082	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000543082	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000543082	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000540999	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000540999	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000540999	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000540999	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000537578	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537578	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537578	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537578	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000564999	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564999	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564999	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564999	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000568740	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568740	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568740	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000568740	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000537856	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537856	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537856	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000537856	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000544241	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000544241	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000544241	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000544241	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000561992	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561992	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561992	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561992	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000561831	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561831	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561831	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000561831	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000565018	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000565018	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000565018	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000565018	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000570287	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570287	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570287	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570287	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000564228	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564228	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564228	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564228	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000567880	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000567880	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000567880	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000567880	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000566286	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566286	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566286	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566286	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000566279	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566279	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566279	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000566279	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000564403	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564403	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564403	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000564403	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000398339	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000398339	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000398339	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000398339	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000570177	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570177	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570177	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000570177	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-3CDS	ENST00000563760	ENST00000371837		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000563760	ENST00000487618		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000563760	ENST00000336233		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-intron	ENST00000563760	ENST00000456827		ChiTaRS3.1			AI265859	TCF4	chr18	52891012	+	LIPA	chr10	90975727	+
intron-5UTR	ENST00000244601	ENST00000553521		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-5UTR	ENST00000244601	ENST00000394366		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-5UTR	ENST00000244601	ENST00000553548		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-5UTR	ENST00000244601	ENST00000557154		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-5UTR	ENST00000244601	ENST00000451983		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-intron	ENST00000244601	ENST00000553635		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-intron	ENST00000244601	ENST00000556587		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-intron	ENST00000244601	ENST00000555349		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-intron	ENST00000244601	ENST00000554021		ChiTaRS3.1			DB154789	HIST1H2BG	chr6	26216448	-	SRSF5	chr14	70233859	+
intron-5UTR	ENST00000252675	ENST00000252675		ChiTaRS3.1			BX474089	FUT5	chr19	5903684	+	FUT5	chr19	5896580	-
intron-intron	ENST00000252675	ENST00000588525		ChiTaRS3.1			BX474089	FUT5	chr19	5903684	+	FUT5	chr19	5896580	-
intron-5UTR	ENST00000588525	ENST00000252675		ChiTaRS3.1			BX474089	FUT5	chr19	5903684	+	FUT5	chr19	5896580	-
intron-intron	ENST00000588525	ENST00000588525		ChiTaRS3.1			BX474089	FUT5	chr19	5903684	+	FUT5	chr19	5896580	-
intron-intron	ENST00000366607	ENST00000444631		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000366607	ENST00000336133		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000366607	ENST00000552080		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000467767	ENST00000444631		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000467767	ENST00000336133		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000467767	ENST00000552080		ChiTaRS3.1			BF809919	TOMM20	chr1	235273945	-	SARNP	chr12	56194347	+
intron-intron	ENST00000541730	ENST00000541730		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000541730	ENST00000324607		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000541730	ENST00000536798		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000324607	ENST00000541730		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000324607	ENST00000324607		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000324607	ENST00000536798		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000536798	ENST00000541730		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000536798	ENST00000324607		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
intron-intron	ENST00000536798	ENST00000536798		ChiTaRS3.1			BG996849	MBOAT1	chr6	20101937	-	MBOAT1	chr15	41200650	+
5CDS-intron	ENST00000535458	ENST00000339556		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000535458	ENST00000392622		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000535458	ENST00000392623		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000535458	ENST00000440685		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000535458	ENST00000368699		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000535458	ENST00000491177		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000339556		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000392622		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000392623		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000440685		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000368699		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000290158	ENST00000491177		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000339556		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000392622		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000392623		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000440685		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000368699		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000540627	ENST00000491177		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000339556		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000392622		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000392623		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000440685		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000368699		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
5CDS-intron	ENST00000537679	ENST00000491177		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000339556		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000392622		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000392623		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000440685		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000368699		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-intron	ENST00000577918	ENST00000491177		ChiTaRS3.1			BF090779	KPNB1	chr17	45753781	-	S100A13	chr1	153604263	-
intron-3UTR	ENST00000509763	ENST00000471389		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000509763	ENST00000394647		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000509763	ENST00000431610		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000509763	ENST00000460382		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000509763	ENST00000463855		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000509763	ENST00000472835		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000305231	ENST00000471389		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000305231	ENST00000394647		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000305231	ENST00000431610		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000305231	ENST00000460382		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000305231	ENST00000463855		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000305231	ENST00000472835		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000508661	ENST00000471389		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000508661	ENST00000394647		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000508661	ENST00000431610		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000508661	ENST00000460382		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-3UTR	ENST00000508661	ENST00000463855		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000508661	ENST00000472835		ChiTaRS3.1			T05729	UGT2B7	chr4	69969008	-	FTO	chr16	54146782	+
intron-intron	ENST00000437099	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000437099	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000437099	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000437099	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000323816	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000323816	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000323816	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000323816	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000432992	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000432992	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000432992	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000432992	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000540214	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000540214	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000540214	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000540214	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000585266	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000585266	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000585266	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000585266	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000580865	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000580865	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000580865	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000580865	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000583882	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000583882	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000583882	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000583882	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000542249	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000542249	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000542249	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000542249	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000396115	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000396115	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000396115	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000396115	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000579158	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000579158	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000579158	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000579158	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000578655	ENST00000395146		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000578655	ENST00000307808		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000578655	ENST00000544085		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-intron	ENST00000578655	ENST00000511996		ChiTaRS3.1			BF371439	GAS7	chr17	10100696	+	AFF1	chr4	87929375	-
intron-3UTR	ENST00000326877	ENST00000237596		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000326877	ENST00000508588		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000326877	ENST00000511337		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000326877	ENST00000502363		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-3UTR	ENST00000539056	ENST00000237596		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000539056	ENST00000508588		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000539056	ENST00000511337		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000539056	ENST00000502363		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-3UTR	ENST00000382224	ENST00000237596		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382224	ENST00000508588		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382224	ENST00000511337		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382224	ENST00000502363		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-3UTR	ENST00000382226	ENST00000237596		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382226	ENST00000508588		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382226	ENST00000511337		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000382226	ENST00000502363		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-3UTR	ENST00000512376	ENST00000237596		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000512376	ENST00000508588		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000512376	ENST00000511337		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
intron-intron	ENST00000512376	ENST00000502363		ChiTaRS3.1			BE934269	LCORL	chr4	17995450	-	PKD2	chr4	88998465	+
3UTR-3UTR	ENST00000375751	ENST00000375751		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375751	ENST00000375754		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375751	ENST00000375747		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-intron	ENST00000375751	ENST00000476708		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375751	ENST00000375746		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375754	ENST00000375751		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375754	ENST00000375754		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375754	ENST00000375747		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-intron	ENST00000375754	ENST00000476708		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375754	ENST00000375746		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375747	ENST00000375751		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375747	ENST00000375754		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375747	ENST00000375747		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-intron	ENST00000375747	ENST00000476708		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375747	ENST00000375746		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
intron-3UTR	ENST00000476708	ENST00000375751		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
intron-3UTR	ENST00000476708	ENST00000375754		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
intron-3UTR	ENST00000476708	ENST00000375747		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
intron-intron	ENST00000476708	ENST00000476708		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
intron-3UTR	ENST00000476708	ENST00000375746		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375746	ENST00000375751		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375746	ENST00000375754		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375746	ENST00000375747		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-intron	ENST00000375746	ENST00000476708		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
3UTR-3UTR	ENST00000375746	ENST00000375746		ChiTaRS3.1			CB242349	SYK	chr9	93660655	-	SYK	chr9	93660494	+
5CDS-intron	ENST00000453386	ENST00000428849		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000486695		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000417146		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000374523		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000492999		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000448818		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000453386	ENST00000467671		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000428849		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000486695		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000417146		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000374523		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000492999		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000448818		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5UTR-intron	ENST00000382191	ENST00000467671		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000428849		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000486695		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000417146		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000374523		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000492999		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000448818		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000471134	ENST00000467671		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000428849		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000486695		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000417146		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000374523		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000492999		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000448818		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
5CDS-intron	ENST00000342294	ENST00000467671		ChiTaRS3.1			CN257709	TRA2B	chr3	185655612	-	KIFC1	chr6	4854399	+
intron-intron	ENST00000380542	ENST00000380542		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000380542	ENST00000469089		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000380542	ENST00000526115		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000469089	ENST00000380542		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000469089	ENST00000469089		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000469089	ENST00000526115		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000526115	ENST00000380542		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000526115	ENST00000469089		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000526115	ENST00000526115		ChiTaRS3.1			BX113409	NAP1L4	chr11	2987134	-	NAP1L4	chr11	2988569	-
intron-intron	ENST00000446845	ENST00000342756		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000446845	ENST00000510663		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000446845	ENST00000504757		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000311806	ENST00000342756		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000311806	ENST00000510663		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000311806	ENST00000504757		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000492714	ENST00000342756		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000492714	ENST00000510663		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
intron-intron	ENST00000492714	ENST00000504757		ChiTaRS3.1			CV357489	OXSR1	chr3	38289311	+	SRP72	chr4	57338968	+
5CDS-3UTR	ENST00000254301	ENST00000274459		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-3UTR	ENST00000254301	ENST00000509910		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-3UTR	ENST00000254301	ENST00000500945		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-intron	ENST00000254301	ENST00000509598		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
3UTR-3UTR	ENST00000553755	ENST00000274459		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
3UTR-3UTR	ENST00000553755	ENST00000509910		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
3UTR-3UTR	ENST00000553755	ENST00000500945		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
3UTR-intron	ENST00000553755	ENST00000509598		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-3UTR	ENST00000554715	ENST00000274459		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-3UTR	ENST00000554715	ENST00000509910		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-3UTR	ENST00000554715	ENST00000500945		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
5CDS-intron	ENST00000554715	ENST00000509598		ChiTaRS3.1			AI131189	LGALS3	chr14	55609371	-	ATG12	chr5	115166929	+
intron-intron	ENST00000340170	ENST00000371839		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000340170	ENST00000371838		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000340170	ENST00000371836		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000340170	ENST00000334103		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000340170	ENST00000497451		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000263208	ENST00000371839		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000263208	ENST00000371838		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000263208	ENST00000371836		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000263208	ENST00000334103		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000263208	ENST00000497451		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000541063	ENST00000371839		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000541063	ENST00000371838		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000541063	ENST00000371836		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000541063	ENST00000334103		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000541063	ENST00000497451		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000546308	ENST00000371839		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000546308	ENST00000371838		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000546308	ENST00000371836		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000546308	ENST00000334103		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000546308	ENST00000497451		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000464189	ENST00000371839		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000464189	ENST00000371838		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000464189	ENST00000371836		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000464189	ENST00000334103		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000464189	ENST00000497451		ChiTaRS3.1			AI621249	HIRA	chr22	19429074	+	AGBL4	chr1	49832887	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			DA452619	CDR1	chrX	139866825	+	CDR1	chrX	139865330	+
intron-3CDS	ENST00000262844	ENST00000443053		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000262844	ENST00000348721		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000372059	ENST00000443053		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000372059	ENST00000348721		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000372057	ENST00000443053		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000372057	ENST00000348721		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000496695	ENST00000443053		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000496695	ENST00000348721		ChiTaRS3.1			AW438759	AMMECR1	chrX	109437660	+	CISH	chr3	50645044	+
intron-3CDS	ENST00000393791	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393791	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393791	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000356411	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000356411	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000356411	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000424809	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000424809	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000424809	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000393797	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000393797	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000393797	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550288	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550288	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550288	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000430041	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000430041	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000430041	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000550454	ENST00000262027		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-5UTR	ENST00000550454	ENST00000315473		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-intron	ENST00000550454	ENST00000447721		ChiTaRS3.1			BE295899	ARHGAP9	chr12	57883307	+	MARS	chr12	57883326	-
intron-3CDS	ENST00000406785	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000406785	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000406785	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000406785	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542756	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542756	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542756	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000542756	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000403092	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000403092	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000403092	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-intron	ENST00000403092	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405901	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405901	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405901	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000405901	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000402441	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000402441	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-3CDS	ENST00000402441	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
5UTR-intron	ENST00000402441	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405269	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405269	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000405269	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000405269	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542024	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542024	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000542024	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000542024	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000332839	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000332839	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000332839	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000332839	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000406391	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000406391	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000406391	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000406391	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000408028	ENST00000310653		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000408028	ENST00000336083		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-3CDS	ENST00000408028	ENST00000536566		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000408028	ENST00000541588		ChiTaRS3.1			DB253719	SLC8A1	chr2	40739488	-	RAB6A	chr11	73418560	-
intron-intron	ENST00000375631	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000375631	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000423382	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000439648	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000434496	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000422978	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000229725	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000437432	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000375631		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000423382		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000439648		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000434496		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000422978		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000229725		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000437432		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000411774	ENST00000411774		ChiTaRS3.1			BQ301319	NEU1	chr6	3160581	-	NEU1	chr6	3161005	-
intron-intron	ENST00000379261	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000379261	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000379261	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000416382	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000416382	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000416382	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000450189	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000450189	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000450189	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000542579	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000542579	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000542579	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000399850	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000399850	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000399850	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000417956	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000417956	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000417956	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354440	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354440	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354440	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000427450	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000427450	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000427450	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000315874	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000315874	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000315874	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000608830	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000608830	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000608830	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000609692	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000609692	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000609692	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354897	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354897	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000354897	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000537122	ENST00000295874		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000537122	ENST00000474889		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000537122	ENST00000495879		ChiTaRS3.1			AI760279	CELF2	chr10	11300928	-	PTPRG	chr3	61798892	-
intron-intron	ENST00000317025	ENST00000317025		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000317025	ENST00000433384		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000317025	ENST00000527502		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000317025	ENST00000316985		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000317025	ENST00000525081		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000433384	ENST00000317025		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000433384	ENST00000433384		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000433384	ENST00000527502		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000433384	ENST00000316985		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000433384	ENST00000525081		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000527502	ENST00000317025		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000527502	ENST00000433384		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000527502	ENST00000527502		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000527502	ENST00000316985		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000527502	ENST00000525081		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000316985	ENST00000317025		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000316985	ENST00000433384		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000316985	ENST00000527502		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000316985	ENST00000316985		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000316985	ENST00000525081		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000525081	ENST00000317025		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000525081	ENST00000433384		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000525081	ENST00000527502		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000525081	ENST00000316985		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000525081	ENST00000525081		ChiTaRS3.1			BF172269	WHSC1L1	chr8	38237812	+	WHSC1L1	chr8	38237784	-
intron-intron	ENST00000309352	ENST00000309352		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000309352	ENST00000409963		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000309352	ENST00000585475		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000409963	ENST00000309352		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000409963	ENST00000409963		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000409963	ENST00000585475		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000585475	ENST00000309352		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000585475	ENST00000409963		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
intron-intron	ENST00000585475	ENST00000585475		ChiTaRS3.1			BI000889	MRPL38	chr17	73898318	+	MRPL38	chr17	73896875	+
5UTR-3CDS	ENST00000341724	ENST00000311275		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000360911		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000458360		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000262975		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000471951		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000352431		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000396281		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000446994		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000536340		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000355972		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000540497		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000461685		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000341724	ENST00000372023		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-5UTR	ENST00000341724	ENST00000468376		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000311275		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000360911		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000458360		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000262975		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000471951		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000352431		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000396281		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000446994		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000536340		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000355972		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000540497		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000461685		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000372004	ENST00000372023		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-5UTR	ENST00000372004	ENST00000468376		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000311275		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000360911		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000458360		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000262975		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000471951		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000352431		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000396281		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000446994		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000536340		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000355972		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000540497		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000461685		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371998	ENST00000372023		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-5UTR	ENST00000371998	ENST00000468376		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000311275		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000360911		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000458360		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000262975		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000471951		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000352431		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000396281		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000446994		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000536340		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000355972		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000540497		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000461685		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-3CDS	ENST00000371997	ENST00000372023		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
5UTR-5UTR	ENST00000371997	ENST00000468376		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000311275		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000360911		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000458360		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000262975		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000471951		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000352431		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000396281		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000446994		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000536340		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000355972		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000540497		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000461685		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-3CDS	ENST00000497292	ENST00000372023		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-5UTR	ENST00000497292	ENST00000468376		ChiTaRS3.1			DA853259	NCOA3	chr20	46130763	+	ZMYND8	chr20	45938950	-
intron-intron	ENST00000548961	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000548961	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000427314	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000312377	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000434422	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000454520	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000551016	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547905	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000514361		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000503028		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000310092		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000396053		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000408993		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000578778		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000483858		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000398692		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000506523		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000530235		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000532968		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000409406		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
intron-intron	ENST00000547061	ENST00000515838		ChiTaRS3.1			BF901109	RACGAP1	chr12	50386941	-	RBM4	chr11	66399825	-
3UTR-5UTR	ENST00000250111	ENST00000310112		ChiTaRS3.1			BM702669	ATP1B2	chr17	7560616	+	SNCB	chr5	176057310	-
3UTR-5UTR	ENST00000250111	ENST00000393693		ChiTaRS3.1			BM702669	ATP1B2	chr17	7560616	+	SNCB	chr5	176057310	-
3UTR-intron	ENST00000250111	ENST00000510387		ChiTaRS3.1			BM702669	ATP1B2	chr17	7560616	+	SNCB	chr5	176057310	-
3UTR-intron	ENST00000250111	ENST00000506696		ChiTaRS3.1			BM702669	ATP1B2	chr17	7560616	+	SNCB	chr5	176057310	-
5CDS-intron	ENST00000295470	ENST00000329321		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5CDS-intron	ENST00000295470	ENST00000470071		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
intron-intron	ENST00000349655	ENST00000329321		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
intron-intron	ENST00000349655	ENST00000470071		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5CDS-intron	ENST00000602300	ENST00000329321		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5CDS-intron	ENST00000602300	ENST00000470071		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5CDS-intron	ENST00000502762	ENST00000329321		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5CDS-intron	ENST00000502762	ENST00000470071		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5UTR-intron	ENST00000514511	ENST00000329321		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
5UTR-intron	ENST00000514511	ENST00000470071		ChiTaRS3.1			R18789	HNRNPDL	chr4	83347615	-	GPR39	chr2	133228127	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			CB069039	MALAT1	chr11	65268086	+	MALAT1	chr11	65266832	+
intron-3UTR	ENST00000540900	ENST00000342505		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000540900	ENST00000465376		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000584423	ENST00000342505		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000584423	ENST00000465376		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000247026	ENST00000342505		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000247026	ENST00000465376		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000479218	ENST00000342505		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-intron	ENST00000479218	ENST00000465376		ChiTaRS3.1			BE843909	NSRP1	chr17	28482426	+	JAK1	chr1	65299385	+
intron-3UTR	ENST00000377457	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377457	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377457	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377457	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377449	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377449	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377449	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377449	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000468061	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000468061	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000468061	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000468061	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000382399	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000382399	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000382399	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000382399	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377441	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377441	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377441	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377441	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377439	ENST00000497571		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-3UTR	ENST00000377439	ENST00000542957		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377439	ENST00000173785		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000377439	ENST00000469435		ChiTaRS3.1			T06379	CBWD6	chr9	69207203	-	KLF6	chr10	3820052	-
intron-intron	ENST00000381340	ENST00000381340		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000545902		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000381340	ENST00000242737		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000381340		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000545902		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000545902	ENST00000242737		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000381340		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000545902		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-intron	ENST00000242737	ENST00000242737		ChiTaRS3.1			AW972739	ITPR2	chr12	26490189	-	ITPR2	chr12	26490256	+
intron-3CDS	ENST00000599539	ENST00000343677		ChiTaRS3.1			CF128699	RPS16	chr19	39926587	+	HIST1H1C	chr6	26056469	-
intron-3CDS	ENST00000339471	ENST00000343677		ChiTaRS3.1			CF128699	RPS16	chr19	39926587	+	HIST1H1C	chr6	26056469	-
intron-3CDS	ENST00000251453	ENST00000343677		ChiTaRS3.1			CF128699	RPS16	chr19	39926587	+	HIST1H1C	chr6	26056469	-
intron-3CDS	ENST00000601655	ENST00000343677		ChiTaRS3.1			CF128699	RPS16	chr19	39926587	+	HIST1H1C	chr6	26056469	-
intron-3CDS	ENST00000369155	ENST00000311413		ChiTaRS3.1			BE263739	HIST2H2BE	chr1	149857614	+	RNF26	chr11	119205939	+
intron-intron	ENST00000393432	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000393432	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000393432	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000393432	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000442819	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000442819	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000442819	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000442819	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000356731	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000356731	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000356731	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000356731	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000329433	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000329433	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000329433	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000329433	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000510411	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000510411	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000510411	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000510411	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000511300	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000511300	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000511300	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000511300	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000524180	ENST00000246957		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000524180	ENST00000575671		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000524180	ENST00000538171		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000524180	ENST00000573872		ChiTaRS3.1			DA379519	HNRNPH1	chr5	179050046	-	TRAP1	chr16	3728552	-
intron-intron	ENST00000401084	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000401084	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264203	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375142	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000433834	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000264202	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000482808	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000334456		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000376450		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000444035		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000544570		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000418754		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000540345		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-intron	ENST00000375144	ENST00000540380		ChiTaRS3.1			BE924919	CAPZB	chr1	19665940	+	PDE2A	chr11	72323711	+
intron-3UTR	ENST00000393085	ENST00000178638		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-3UTR	ENST00000393085	ENST00000344366		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-3UTR	ENST00000393085	ENST00000422263		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-intron	ENST00000393085	ENST00000560666		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-3UTR	ENST00000435723	ENST00000178638		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-3UTR	ENST00000435723	ENST00000344366		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-3UTR	ENST00000435723	ENST00000422263		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-intron	ENST00000435723	ENST00000560666		ChiTaRS3.1			BQ325609	MTPN	chr7	135613459	+	CA12	chr15	63617364	-
intron-intron	ENST00000160298	ENST00000395135		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000395132		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000268059		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000354026		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000268058		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000565898		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000569477		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000569965		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000567543		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000160298	ENST00000435786		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000160298	ENST00000436891		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000564428		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000359928		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000160298	ENST00000563500		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000160298	ENST00000569161		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000395135		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000395132		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000268059		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000354026		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000268058		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000565898		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000569477		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000569965		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000567543		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000446248	ENST00000435786		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000446248	ENST00000436891		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000564428		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000359928		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-3UTR	ENST00000446248	ENST00000563500		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000446248	ENST00000569161		ChiTaRS3.1			BI000919	CAMSAP3	chr19	7681311	+	PML	chr15	74327589	-
intron-intron	ENST00000371979	ENST00000369831		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000460717		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000369827		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000442650		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000464206		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000241337		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000414179		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000371979	ENST00000369829		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000369831		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000460717		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000369827		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000442650		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000464206		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000241337		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000414179		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000251943	ENST00000369829		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000369831		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000460717		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000369827		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000442650		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000464206		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000241337		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000414179		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000394780	ENST00000369829		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000369831		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000460717		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000369827		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000442650		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000464206		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000241337		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000414179		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000470971	ENST00000369829		ChiTaRS3.1			EB387269	ALG13	chrX	110935423	+	GSTM2	chr1	110220793	-
intron-intron	ENST00000381166	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000381166	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000381166	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000381166	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000381166	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000381166	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000427855	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000340738	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554301	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000555445	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000381166		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000427855		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000340738		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000554301		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000555445		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-intron	ENST00000554314	ENST00000554314		ChiTaRS3.1			BU608329	PAPLN	chr14	73739072	+	PAPLN	chr14	73739192	-
intron-3UTR	ENST00000518836	ENST00000263168		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-intron	ENST00000518836	ENST00000476936		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-3UTR	ENST00000313708	ENST00000263168		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-intron	ENST00000313708	ENST00000476936		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-3UTR	ENST00000380654	ENST00000263168		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-intron	ENST00000380654	ENST00000476936		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-3UTR	ENST00000517373	ENST00000263168		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-intron	ENST00000517373	ENST00000476936		ChiTaRS3.1			BI544219	EBF1	chr5	158125090	-	CAPZA1	chr1	113213446	-
intron-3UTR	ENST00000247182	ENST00000247182		ChiTaRS3.1			BU675359	SIX1	chr14	61112846	+	SIX1	chr14	61112665	-
intron-intron	ENST00000247182	ENST00000554986		ChiTaRS3.1			BU675359	SIX1	chr14	61112846	+	SIX1	chr14	61112665	-
intron-3UTR	ENST00000554986	ENST00000247182		ChiTaRS3.1			BU675359	SIX1	chr14	61112846	+	SIX1	chr14	61112665	-
intron-intron	ENST00000554986	ENST00000554986		ChiTaRS3.1			BU675359	SIX1	chr14	61112846	+	SIX1	chr14	61112665	-
intron-5UTR	ENST00000510123	ENST00000270792		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000510123	ENST00000319041		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000389158	ENST00000270792		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000389158	ENST00000319041		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000507413	ENST00000270792		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000507413	ENST00000319041		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000509257	ENST00000270792		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-5UTR	ENST00000509257	ENST00000319041		ChiTaRS3.1			BG744339	NOP16	chr5	175815444	-	SH3BGRL3	chr1	26606607	+
intron-intron	ENST00000295633	ENST00000396604		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000295633	ENST00000396602		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000295633	ENST00000530463		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000295633	ENST00000396597		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000295633	ENST00000299606		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000424703	ENST00000396604		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000424703	ENST00000396602		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000424703	ENST00000530463		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000424703	ENST00000396597		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000424703	ENST00000299606		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000485968	ENST00000396604		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000485968	ENST00000396602		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000485968	ENST00000530463		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000485968	ENST00000396597		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
intron-intron	ENST00000485968	ENST00000299606		ChiTaRS3.1			AW379989	FSTL1	chr3	120113503	-	ZNF143	chr11	9484561	+
5CDS-intron	ENST00000513761	ENST00000358078		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000513761	ENST00000347842		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000513761	ENST00000473709		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000347613	ENST00000358078		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000347613	ENST00000347842		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000347613	ENST00000473709		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000360642	ENST00000358078		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000360642	ENST00000347842		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000360642	ENST00000473709		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000504131	ENST00000358078		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000504131	ENST00000347842		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
5CDS-intron	ENST00000504131	ENST00000473709		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
intron-intron	ENST00000506924	ENST00000358078		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
intron-intron	ENST00000506924	ENST00000347842		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
intron-intron	ENST00000506924	ENST00000473709		ChiTaRS3.1			R12599	CLCN3	chr4	170641124	-	ASIC4	chr2	220383146	+
intron-intron	ENST00000482812	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000482812	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000482812	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000482812	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000482812	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000482812	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-3UTR	ENST00000482812	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000430044	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-3UTR	ENST00000430044	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000452146	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-3UTR	ENST00000452146	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000434507	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-3UTR	ENST00000434507	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-intron	ENST00000415421	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
intron-3UTR	ENST00000415421	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-intron	ENST00000320311	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
5CDS-3UTR	ENST00000320311	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000482812		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000430044		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000452146		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000434507		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000415421		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-intron	ENST00000422997	ENST00000320311		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-3UTR	ENST00000422997	ENST00000422997		ChiTaRS3.1			BE169979	GALNT11	chr7	151805264	-	GALNT11	chr7	151805341	+
3UTR-5UTR	ENST00000411641	ENST00000295897		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000411641	ENST00000415165		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000411641	ENST00000503124		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000411641	ENST00000509063		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-intron	ENST00000411641	ENST00000401494		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-intron	ENST00000411641	ENST00000505649		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000273784	ENST00000295897		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000273784	ENST00000415165		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000273784	ENST00000503124		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-5UTR	ENST00000273784	ENST00000509063		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-intron	ENST00000273784	ENST00000401494		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
3UTR-intron	ENST00000273784	ENST00000505649		ChiTaRS3.1			AI174759	AHSG	chr3	186338913	-	ALB	chr4	74270015	+
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AA573599	IGHG1	chr22	22786739	-	IGHG1	chr22	23237604	+
intron-intron	ENST00000496391	ENST00000550404		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-3UTR	ENST00000496391	ENST00000261739		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-intron	ENST00000482465	ENST00000550404		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-3UTR	ENST00000482465	ENST00000261739		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-intron	ENST00000462601	ENST00000550404		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-3UTR	ENST00000462601	ENST00000261739		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-intron	ENST00000397912	ENST00000550404		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-3UTR	ENST00000397912	ENST00000261739		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-intron	ENST00000354783	ENST00000550404		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-3UTR	ENST00000354783	ENST00000261739		ChiTaRS3.1			BI036729	PRKRIP1	chr7	102037781	+	ANKRD13A	chr12	110476918	+
intron-intron	ENST00000490220	ENST00000446176		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000490220	ENST00000420781		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000490220	ENST00000355681		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000490220	ENST00000443566		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000490220	ENST00000478129		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398600	ENST00000446176		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398600	ENST00000420781		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398600	ENST00000355681		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398600	ENST00000443566		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398600	ENST00000478129		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398598	ENST00000446176		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398598	ENST00000420781		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398598	ENST00000355681		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398598	ENST00000443566		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000398598	ENST00000478129		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000455164	ENST00000446176		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000455164	ENST00000420781		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000455164	ENST00000355681		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000455164	ENST00000443566		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000455164	ENST00000478129		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000288383	ENST00000446176		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000288383	ENST00000420781		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000288383	ENST00000355681		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000288383	ENST00000443566		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-intron	ENST00000288383	ENST00000478129		ChiTaRS3.1			AW390099	MX1	chr21	42820889	-	FNBP1	chr9	132669877	-
intron-3CDS	ENST00000596304	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000596304	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000596304	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000596304	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000430157	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000430157	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000430157	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000430157	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000596273	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000596273	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000596273	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000596273	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000442744	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000442744	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000442744	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000442744	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595683	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595683	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595683	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000595683	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595158	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595158	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000595158	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000595158	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000598780	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000598780	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000598780	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000598780	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599551	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599551	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599551	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000599551	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000597451	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000597451	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000597451	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000597451	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599595	ENST00000358161		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599595	ENST00000372739		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-3CDS	ENST00000599595	ENST00000372731		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
intron-intron	ENST00000599595	ENST00000475367		ChiTaRS3.1			BF082819	UBA52	chr19	18685867	-	SPTAN1	chr9	131353865	+
5UTR-5UTR	ENST00000601521	ENST00000373548		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000601521	ENST00000373541		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000601521	ENST00000490081		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-5UTR	ENST00000598098	ENST00000373548		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000598098	ENST00000373541		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000598098	ENST00000490081		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-5UTR	ENST00000598495	ENST00000373548		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000598495	ENST00000373541		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000598495	ENST00000490081		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-5UTR	ENST00000196551	ENST00000373548		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000196551	ENST00000373541		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
5UTR-intron	ENST00000196551	ENST00000490081		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
intron-5UTR	ENST00000596046	ENST00000373548		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
intron-intron	ENST00000596046	ENST00000373541		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
intron-intron	ENST00000596046	ENST00000490081		ChiTaRS3.1			U50079	RPS5	chr19	58898660	-	HDAC1	chr1	32757757	+
In-frame	ENST00000248553	ENST00000248553		ChiTaRS3.1			AI801539	HSPB1	chr7	75933457	-	HSPB1	chr7	75932071	+
5CDS-intron	ENST00000248553	ENST00000429938		ChiTaRS3.1			AI801539	HSPB1	chr7	75933457	-	HSPB1	chr7	75932071	+
In-frame	ENST00000429938	ENST00000248553		ChiTaRS3.1			AI801539	HSPB1	chr7	75933457	-	HSPB1	chr7	75932071	+
5CDS-intron	ENST00000429938	ENST00000429938		ChiTaRS3.1			AI801539	HSPB1	chr7	75933457	-	HSPB1	chr7	75932071	+
intron-intron	ENST00000294309	ENST00000294309		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
intron-intron	ENST00000294309	ENST00000542467		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
intron-3UTR	ENST00000294309	ENST00000442692		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
intron-intron	ENST00000542467	ENST00000294309		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
intron-intron	ENST00000542467	ENST00000542467		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
intron-3UTR	ENST00000542467	ENST00000442692		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
3UTR-intron	ENST00000442692	ENST00000294309		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
3UTR-intron	ENST00000442692	ENST00000542467		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
3UTR-3UTR	ENST00000442692	ENST00000442692		ChiTaRS3.1			BG981599	TPCN2	chr11	68856236	-	TPCN2	chr11	68856744	-
5UTR-3CDS	ENST00000359139	ENST00000360957		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000359139	ENST00000418234		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395741	ENST00000360957		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395741	ENST00000418234		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395744	ENST00000360957		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395744	ENST00000418234		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000216061	ENST00000360957		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000216061	ENST00000418234		ChiTaRS3.1			BM849429	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5CDS-intron	ENST00000435275	ENST00000458420		ChiTaRS3.1			AI826669	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000440692	ENST00000458420		ChiTaRS3.1			AI826669	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000372360	ENST00000458420		ChiTaRS3.1			AI826669	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
3UTR-intron	ENST00000476545	ENST00000458420		ChiTaRS3.1			AI826669	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000360830	ENST00000458420		ChiTaRS3.1			AI826669	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
intron-3CDS	ENST00000263202	ENST00000394126		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000356271		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000394128		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000394127		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000501516		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000263202	ENST00000479829		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394126		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000356271		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394128		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394127		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000501516		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000360834	ENST00000479829		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394126		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000356271		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394128		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394127		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000501516		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000399523	ENST00000479829		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394126		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000356271		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394128		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394127		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000501516		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000484101	ENST00000479829		ChiTaRS3.1			BE465519	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
3UTR-3UTR	ENST00000415930	ENST00000264498		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
3UTR-3UTR	ENST00000415930	ENST00000608478		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
intron-3UTR	ENST00000356487	ENST00000264498		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
intron-3UTR	ENST00000356487	ENST00000608478		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
intron-3UTR	ENST00000586425	ENST00000264498		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
intron-3UTR	ENST00000586425	ENST00000608478		ChiTaRS3.1			AI342169	GPI	chr19	34892969	-	FGF2	chr4	123815020	-
intron-3UTR	ENST00000439590	ENST00000410026		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-intron	ENST00000439590	ENST00000409510		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000439590	ENST00000425611		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000311111	ENST00000410026		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-intron	ENST00000311111	ENST00000409510		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000311111	ENST00000425611		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000584577	ENST00000410026		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-intron	ENST00000584577	ENST00000409510		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000584577	ENST00000425611		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000534490	ENST00000410026		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-intron	ENST00000534490	ENST00000409510		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000534490	ENST00000425611		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000533498	ENST00000410026		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-intron	ENST00000533498	ENST00000409510		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3UTR	ENST00000533498	ENST00000425611		ChiTaRS3.1			BG272139	RPL38	chr17	72200268	-	NABP1	chr2	192551145	+
intron-3CDS	ENST00000408742	ENST00000346169		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000414031		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000392537		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000382330		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000350481		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000352767		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000427845		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000342981		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000319274		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000424196		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000411531		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000441154		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000434061		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3CDS	ENST00000408742	ENST00000435046		ChiTaRS3.1			F00479	MIR548N	chr2	179484504	+	EIF4G1	chr3	184049086	-
intron-3UTR	ENST00000404767	ENST00000376929		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000404767	ENST00000506690		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000389805		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000402874		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000510187		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000404767	ENST00000360718		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000376929		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000389470	ENST00000506690		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000389805		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000402874		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000510187		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000389470	ENST00000360718		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000376929		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000493531	ENST00000506690		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000389805		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000402874		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000510187		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-3UTR	ENST00000493531	ENST00000360718		ChiTaRS3.1			AK093809	INTS1	chr7	1537981	-	SQSTM1	chr5	179263873	+
intron-intron	ENST00000406870	ENST00000406870		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000406870	ENST00000232014		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000406870	ENST00000450123		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000406870	ENST00000496823		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000232014	ENST00000406870		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000232014	ENST00000232014		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000232014	ENST00000450123		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000232014	ENST00000496823		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000450123	ENST00000406870		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000450123	ENST00000232014		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000450123	ENST00000450123		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000450123	ENST00000496823		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000496823	ENST00000406870		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000496823	ENST00000232014		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000496823	ENST00000450123		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000496823	ENST00000496823		ChiTaRS3.1			AU185789	BCL6	chr3	187461466	+	BCL6	chr3	187460107	+
intron-intron	ENST00000223127	ENST00000449934		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000417899		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000497496		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000427477		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000446505		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000547767		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000400322		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000493320		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000400325		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000547609		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000420259		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000468858		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000418465		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000432479		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000552236		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000438928		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000486844		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000415525		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000414473		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
intron-intron	ENST00000223127	ENST00000546529		ChiTaRS3.1			BI045639	PLOD3	chr7	100849575	-	MICA	chr6	2705974	-
3UTR-3UTR	ENST00000358598	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000358598	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000358598	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000358598	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000358598	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000358598	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000392711	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000392711	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000392711	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000392711	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000392711	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000392711	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000589228	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000589228	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000589228	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000589228	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000589228	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000589228	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000536854	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000536854	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000536854	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-3UTR	ENST00000536854	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000536854	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
3UTR-intron	ENST00000536854	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000586397	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000586397	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000586397	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000586397	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-intron	ENST00000586397	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-intron	ENST00000586397	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000588188	ENST00000358598		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000588188	ENST00000392711		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000588188	ENST00000589228		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-3UTR	ENST00000588188	ENST00000536854		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-intron	ENST00000588188	ENST00000586397		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-intron	ENST00000588188	ENST00000588188		ChiTaRS3.1			CN478669	PRKAR1A	chr17	66528783	-	PRKAR1A	chr17	66528066	+
intron-intron	ENST00000375592	ENST00000375592		ChiTaRS3.1			BF371859	FBXO42	chr1	16622189	-	FBXO42	chr1	16622884	-
intron-intron	ENST00000375592	ENST00000478089		ChiTaRS3.1			BF371859	FBXO42	chr1	16622189	-	FBXO42	chr1	16622884	-
intron-intron	ENST00000478089	ENST00000375592		ChiTaRS3.1			BF371859	FBXO42	chr1	16622189	-	FBXO42	chr1	16622884	-
intron-intron	ENST00000478089	ENST00000478089		ChiTaRS3.1			BF371859	FBXO42	chr1	16622189	-	FBXO42	chr1	16622884	-
5CDS-intron	ENST00000357701	ENST00000357701		ChiTaRS3.1			AA348059	MYBPC2	chr19	50961888	+	MYBPC2	chr19	50961739	-
3UTR-intron	ENST00000418929	ENST00000390168		ChiTaRS3.1			AA693879	PRR12	chr19	50129568	-	H19	chr11	2018661	-
intron-3UTR	ENST00000366641	ENST00000366641		ChiTaRS3.1			CB243269	EGLN1	chr1	231499914	+	EGLN1	chr1	231499991	-
intron-intron	ENST00000366641	ENST00000476717		ChiTaRS3.1			CB243269	EGLN1	chr1	231499914	+	EGLN1	chr1	231499991	-
intron-3UTR	ENST00000476717	ENST00000366641		ChiTaRS3.1			CB243269	EGLN1	chr1	231499914	+	EGLN1	chr1	231499991	-
intron-intron	ENST00000476717	ENST00000476717		ChiTaRS3.1			CB243269	EGLN1	chr1	231499914	+	EGLN1	chr1	231499991	-
intron-3CDS	ENST00000330978	ENST00000343815		ChiTaRS3.1			BG956089	BOLA2	chr16	29996237	+	UBAP2L	chr1	154223559	+
intron-3CDS	ENST00000330978	ENST00000428931		ChiTaRS3.1			BG956089	BOLA2	chr16	29996237	+	UBAP2L	chr1	154223559	+
intron-3CDS	ENST00000330978	ENST00000271877		ChiTaRS3.1			BG956089	BOLA2	chr16	29996237	+	UBAP2L	chr1	154223559	+
intron-3CDS	ENST00000330978	ENST00000361546		ChiTaRS3.1			BG956089	BOLA2	chr16	29996237	+	UBAP2L	chr1	154223559	+
intron-intron	ENST00000330978	ENST00000484819		ChiTaRS3.1			BG956089	BOLA2	chr16	29996237	+	UBAP2L	chr1	154223559	+
intron-intron	ENST00000369075	ENST00000369075		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000369075	ENST00000543134		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000369075	ENST00000475542		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000543134	ENST00000369075		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000543134	ENST00000543134		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000543134	ENST00000475542		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000475542	ENST00000369075		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000475542	ENST00000543134		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
intron-intron	ENST00000475542	ENST00000475542		ChiTaRS3.1			BG742999	SEC23IP	chr10	121696862	+	SEC23IP	chr10	121683326	+
3UTR-3CDS	ENST00000338970	ENST00000338970		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000338970	ENST00000396203		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000338970	ENST00000416518		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3UTR	ENST00000338970	ENST00000461368		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000396203	ENST00000338970		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000396203	ENST00000396203		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000396203	ENST00000416518		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3UTR	ENST00000396203	ENST00000461368		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000416518	ENST00000338970		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000416518	ENST00000396203		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3CDS	ENST00000416518	ENST00000416518		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
3UTR-3UTR	ENST00000416518	ENST00000461368		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
intron-3CDS	ENST00000461368	ENST00000338970		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
intron-3CDS	ENST00000461368	ENST00000396203		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
intron-3CDS	ENST00000461368	ENST00000416518		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
intron-3UTR	ENST00000461368	ENST00000461368		ChiTaRS3.1			AV738739	RPL14	chr3	40503739	+	RPL14	chr3	40502898	+
5CDS-intron	ENST00000457913	ENST00000406091		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000457913	ENST00000262231		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000457913	ENST00000507740		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000457913	ENST00000522174		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000457913	ENST00000436393		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000457913	ENST00000339750		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000406091		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000262231		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000507740		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000522174		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000436393		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000277225	ENST00000339750		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000406091		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000262231		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000507740		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000522174		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000436393		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
5CDS-intron	ENST00000441147	ENST00000339750		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000406091		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000262231		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000507740		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000522174		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000436393		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000542028	ENST00000339750		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000406091		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000262231		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000507740		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000522174		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000436393		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
3UTR-intron	ENST00000497489	ENST00000339750		ChiTaRS3.1			BF917369	ZNF462	chr9	109692005	-	RIMS2	chr8	105056606	-
intron-intron	ENST00000508628	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000508628	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000508628	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000508628	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000508628	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000508628	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000456466	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000582970	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000319921	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000336301	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000508628		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000456466		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000582970		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000319921		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000336301		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000427003	ENST00000427003		ChiTaRS3.1			AK130239	RNF213	chr17	78358550	-	RNF213	chr17	78362846	-
intron-intron	ENST00000341865	ENST00000363315		ChiTaRS3.1			AI656259	C6orf132	chr6	42094377	+	SNHG16	chr17	74556825	-
intron-intron	ENST00000341865	ENST00000364968		ChiTaRS3.1			AI656259	C6orf132	chr6	42094377	+	SNHG16	chr17	74556825	-
intron-intron	ENST00000356542	ENST00000363315		ChiTaRS3.1			AI656259	C6orf132	chr6	42094377	+	SNHG16	chr17	74556825	-
intron-intron	ENST00000356542	ENST00000364968		ChiTaRS3.1			AI656259	C6orf132	chr6	42094377	+	SNHG16	chr17	74556825	-
intron-intron	ENST00000358127	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000358127	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523241	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520154	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377852	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377853	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000522003	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000520281	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000414447	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000523145	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000446742	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000358127		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000523241		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000520154		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000377852		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000377853		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000522003		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000520281		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000414447		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000523145		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000446742		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-intron	ENST00000377847	ENST00000377847		ChiTaRS3.1			AW297549	PAX5	chr9	36901973	-	PAX5	chr9	36897675	+
intron-3UTR	ENST00000447716	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000447716	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000447716	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395243	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000395243	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000453384	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000453384	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000301043	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000301043	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000450529	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000450529	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000415040	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000415040	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395242	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000395242	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000395245	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000395245	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000447716		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000395243		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000453384		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000301043		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000450529		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000415040		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000395242		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-3UTR	ENST00000436730	ENST00000395245		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
intron-intron	ENST00000436730	ENST00000436730		ChiTaRS3.1			BM670449	RAB34	chr17	27041537	+	RAB34	chr17	27041505	-
3UTR-intron	ENST00000405995	ENST00000529193		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000405995	ENST00000288400		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000405995	ENST00000534616		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000357304	ENST00000529193		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000357304	ENST00000288400		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000357304	ENST00000534616		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000458550	ENST00000529193		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000458550	ENST00000288400		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000458550	ENST00000534616		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000372249	ENST00000529193		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000372249	ENST00000288400		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000372249	ENST00000534616		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000465931	ENST00000529193		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000465931	ENST00000288400		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
3UTR-intron	ENST00000465931	ENST00000534616		ChiTaRS3.1			BF820889	PRRC2B	chr9	134372739	+	CREB3L1	chr11	46331651	+
intron-intron	ENST00000352140	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000352140	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000352140	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000594404	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000594404	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000594404	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367376	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367376	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367376	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000442510	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000442510	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000442510	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000348564	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000348564	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000348564	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000598951	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000598951	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000598951	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367364	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367364	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000367364	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000413409	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000413409	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000413409	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000391970	ENST00000282516		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000391970	ENST00000448238		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-intron	ENST00000391970	ENST00000504430		ChiTaRS3.1			BF871489	PTPRC	chr1	198669839	-	NIPBL	chr5	36998942	+
intron-3UTR	ENST00000252891	ENST00000407418		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000252891	ENST00000216083		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000598779	ENST00000407418		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000598779	ENST00000216083		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000540131	ENST00000407418		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000540131	ENST00000216083		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000599594	ENST00000407418		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
intron-3UTR	ENST00000599594	ENST00000216083		ChiTaRS3.1			AI692569	NUMBL	chr19	41172778	+	CBX6	chr22	39260609	-
5CDS-intron	ENST00000550697	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000550697	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000550697	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548580	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548580	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548580	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000293422	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000293422	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000293422	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
3UTR-intron	ENST00000348108	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
3UTR-intron	ENST00000348108	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
3UTR-intron	ENST00000348108	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000549017	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000549017	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000549017	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000549566	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000549566	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000549566	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000536128	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000536128	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000536128	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000547649	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000547649	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000547649	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000547408	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000547408	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000547408	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551589	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551589	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551589	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548400	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548400	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
5CDS-intron	ENST00000548400	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000548293	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000548293	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000548293	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551954	ENST00000378004		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551954	ENST00000274498		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000551954	ENST00000486650		ChiTaRS3.1			AW086503	MYL6	chr12	56555358	+	ARHGAP26	chr5	142587741	+
intron-intron	ENST00000372771	ENST00000258886		ChiTaRS3.1			AW856369	RLF	chr1	40649893	+	IREB2	chr15	78766921	+
intron-3UTR	ENST00000372771	ENST00000560440		ChiTaRS3.1			AW856369	RLF	chr1	40649893	+	IREB2	chr15	78766921	+
intron-intron	ENST00000372771	ENST00000559427		ChiTaRS3.1			AW856369	RLF	chr1	40649893	+	IREB2	chr15	78766921	+
intron-intron	ENST00000514251	ENST00000514251		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000514251	ENST00000321464		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000514251	ENST00000441582		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000514251	ENST00000512327		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000321464	ENST00000514251		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000321464	ENST00000321464		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000321464	ENST00000441582		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000321464	ENST00000512327		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000441582	ENST00000514251		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000441582	ENST00000321464		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000441582	ENST00000441582		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000441582	ENST00000512327		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000512327	ENST00000514251		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000512327	ENST00000321464		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000512327	ENST00000441582		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-intron	ENST00000512327	ENST00000512327		ChiTaRS3.1			CF127199	ZBTB38	chr3	141142402	-	ZBTB38	chr3	141087624	+
intron-3UTR	ENST00000295702	ENST00000295702		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000295702	ENST00000529008		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000295702	ENST00000496742		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000295702	ENST00000480567		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000529008	ENST00000295702		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000529008	ENST00000529008		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000529008	ENST00000496742		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000529008	ENST00000480567		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000496742	ENST00000295702		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000496742	ENST00000529008		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000496742	ENST00000496742		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000496742	ENST00000480567		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000480567	ENST00000295702		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000480567	ENST00000529008		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000480567	ENST00000496742		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-3UTR	ENST00000480567	ENST00000480567		ChiTaRS3.1			AA372679	SSR2	chr1	155979296	+	SSR2	chr1	155979215	-
intron-intron	ENST00000458479	ENST00000458479		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000458479	ENST00000440052		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000458479	ENST00000455170		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000440052	ENST00000458479		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000440052	ENST00000440052		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000440052	ENST00000455170		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000455170	ENST00000458479		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000455170	ENST00000440052		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
intron-intron	ENST00000455170	ENST00000455170		ChiTaRS3.1			CN368089	PAXBP1-AS1	chr21	34106693	-	PAXBP1-AS1	chr21	34117176	-
3UTR-intron	ENST00000541626	ENST00000304623		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000541626	ENST00000359640		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000541626	ENST00000511377		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000541626	ENST00000458100		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000541626	ENST00000503622		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000541626	ENST00000495388		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000304623		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000359640		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000511377		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000458100		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000503622		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
3UTR-intron	ENST00000322054	ENST00000495388		ChiTaRS3.1			BF992979	EHD3	chr2	31489634	-	CTNND2	chr5	11280847	-
intron-3CDS	ENST00000288607	ENST00000335606		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3CDS	ENST00000288607	ENST00000382072		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000514195		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000382085		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000502637		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000441713		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000426255		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000512079		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000288607	ENST00000382068		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3CDS	ENST00000404674	ENST00000335606		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3CDS	ENST00000404674	ENST00000382072		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000514195		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000382085		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000502637		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000441713		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000426255		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000512079		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000404674	ENST00000382068		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3CDS	ENST00000252329	ENST00000335606		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3CDS	ENST00000252329	ENST00000382072		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000514195		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000382085		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000502637		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000441713		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000426255		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000512079		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-5UTR	ENST00000252329	ENST00000382068		ChiTaRS3.1			BE267449	PSMG3	chr7	1607316	-	AMACR	chr5	34007940	+
intron-3UTR	ENST00000407418	ENST00000407418		ChiTaRS3.1			CB306679	CBX6	chr22	39260446	+	CBX6	chr22	39260550	-
intron-3UTR	ENST00000407418	ENST00000216083		ChiTaRS3.1			CB306679	CBX6	chr22	39260446	+	CBX6	chr22	39260550	-
intron-3UTR	ENST00000216083	ENST00000407418		ChiTaRS3.1			CB306679	CBX6	chr22	39260446	+	CBX6	chr22	39260550	-
intron-3UTR	ENST00000216083	ENST00000216083		ChiTaRS3.1			CB306679	CBX6	chr22	39260446	+	CBX6	chr22	39260550	-
5CDS-3UTR	ENST00000409731	ENST00000409731		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000409731	ENST00000345517		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-intron	ENST00000409731	ENST00000409918		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000409731	ENST00000409624		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000345517	ENST00000409731		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000345517	ENST00000345517		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-intron	ENST00000345517	ENST00000409918		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000345517	ENST00000409624		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
intron-3UTR	ENST00000409918	ENST00000409731		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
intron-3UTR	ENST00000409918	ENST00000345517		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
intron-intron	ENST00000409918	ENST00000409918		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
intron-3UTR	ENST00000409918	ENST00000409624		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000409624	ENST00000409731		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000409624	ENST00000345517		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-intron	ENST00000409624	ENST00000409918		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
5CDS-3UTR	ENST00000409624	ENST00000409624		ChiTaRS3.1			AA506469	ACTG2	chr2	74146695	+	ACTG2	chr2	74146761	-
intron-intron	ENST00000338687	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000545398	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372939	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372935	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372936	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372931	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000478422	ENST00000573001		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000326577		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000341627		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000575124		ChiTaRS3.1			BI053529	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3CDS	ENST00000346798	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000346798	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000354192	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000348990	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000357903	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000358918	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000359726	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000448388	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000440126	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000439274	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000346798		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000354192		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000348990		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000357903		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000358918		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000359726		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000448388		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000440126		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000439274		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000474136	ENST00000474136		ChiTaRS3.1			BF330219	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000327087	ENST00000327087		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000327087	ENST00000546188		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000327087	ENST00000356134		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000327087	ENST00000538154		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000546188	ENST00000327087		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000546188	ENST00000546188		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000546188	ENST00000356134		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000546188	ENST00000538154		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000356134	ENST00000327087		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000356134	ENST00000546188		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000356134	ENST00000356134		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000356134	ENST00000538154		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000538154	ENST00000327087		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000538154	ENST00000546188		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000538154	ENST00000356134		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000538154	ENST00000538154		ChiTaRS3.1			BM682729	ANO2	chr12	5713565	-	ANO2	chr12	5714239	-
intron-intron	ENST00000368694	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-3UTR	ENST00000368694	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368694	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368694	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368694	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368694	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-intron	ENST00000495554	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-3UTR	ENST00000495554	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-intron	ENST00000495554	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-intron	ENST00000495554	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-intron	ENST00000495554	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
3UTR-intron	ENST00000495554	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000403433	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-3UTR	ENST00000403433	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000403433	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000403433	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000403433	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000403433	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368690	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-3UTR	ENST00000368690	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368690	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368690	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368690	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368690	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368687	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-3UTR	ENST00000368687	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368687	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368687	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368687	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368687	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368686	ENST00000368694		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-3UTR	ENST00000368686	ENST00000495554		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368686	ENST00000403433		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368686	ENST00000368690		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368686	ENST00000368687		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000368686	ENST00000368686		ChiTaRS3.1			BE866929	CHTOP	chr1	153610305	-	CHTOP	chr1	153610310	+
intron-intron	ENST00000408388	ENST00000408388		ChiTaRS3.1			BE170539	PVT1	chr8	128831212	-	PVT1	chr8	128836126	-
intron-intron	ENST00000027335	ENST00000280886		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000027335	ENST00000381496		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000027335	ENST00000540204		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000441892	ENST00000280886		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000441892	ENST00000381496		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000441892	ENST00000540204		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000450165	ENST00000280886		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000450165	ENST00000381496		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
intron-intron	ENST00000450165	ENST00000540204		ChiTaRS3.1			BQ326459	CDH17	chr8	95172232	+	DIP2C	chr10	708995	+
5CDS-intron	ENST00000340360	ENST00000263672		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000340360	ENST00000530257		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000340360	ENST00000526361		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000340360	ENST00000528265		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000321448	ENST00000263672		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000321448	ENST00000530257		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000321448	ENST00000526361		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000321448	ENST00000528265		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000527087	ENST00000263672		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000527087	ENST00000530257		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000527087	ENST00000526361		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
5CDS-intron	ENST00000527087	ENST00000528265		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000533598	ENST00000263672		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000533598	ENST00000530257		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000533598	ENST00000526361		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000533598	ENST00000528265		ChiTaRS3.1			BI822849	XRRA1	chr11	74644870	-	SPCS2	chr1	28422819	-
intron-intron	ENST00000408742	ENST00000320985		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000408742	ENST00000361642		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000408742	ENST00000559858		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000408742	ENST00000560721		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000408742	ENST00000542815		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000408742	ENST00000446923		ChiTaRS3.1			AA094699	MIR548N	chr2	179439264	-	ZEB1	chr10	31751841	+
intron-intron	ENST00000488996	ENST00000508803		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000382892		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000382891		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000382895		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000482415		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000382888		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000514045		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000436793		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000420906		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000503128		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000488996	ENST00000398261		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000508803		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000382892		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000382891		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000382895		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000482415		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000382888		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000514045		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000436793		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000420906		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000503128		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000356387	ENST00000398261		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000508803		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000382892		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000382891		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000382895		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000482415		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000382888		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000514045		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000436793		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000420906		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000503128		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
3UTR-intron	ENST00000478730	ENST00000398261		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000508803		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000382892		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000382891		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000382895		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000482415		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000382888		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000514045		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000436793		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000420906		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000503128		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000403646	ENST00000398261		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000508803		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000382892		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000382891		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000382895		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000482415		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000382888		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000514045		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000436793		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000420906		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000503128		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000473939	ENST00000398261		ChiTaRS3.1			DQ090923	ORAI2	chr7	102091939	+	WHSC1	chr4	1913300	+
intron-intron	ENST00000373865	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373865	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373865	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373865	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373865	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373865	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373865	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373855	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373855	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373855	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373855	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373855	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373855	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373855	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000238341	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000238341	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000238341	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000238341	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000238341	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000238341	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000238341	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373850	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373850	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373850	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-intron	ENST00000373850	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373850	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373850	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
5CDS-3UTR	ENST00000373850	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373847	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373847	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373847	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373847	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373847	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373847	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373847	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-intron	ENST00000373845	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-intron	ENST00000373845	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-intron	ENST00000373845	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-intron	ENST00000373845	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-3UTR	ENST00000373845	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-3UTR	ENST00000373845	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
3UTR-3UTR	ENST00000373845	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373844	ENST00000373865		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373844	ENST00000373855		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373844	ENST00000238341		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-intron	ENST00000373844	ENST00000373850		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373844	ENST00000373847		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373844	ENST00000373845		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3UTR	ENST00000373844	ENST00000373844		ChiTaRS3.1			BF921649	CNTRL	chr9	123930596	+	CNTRL	chr9	123920353	+
intron-3CDS	ENST00000346916	ENST00000346916		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000545507		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000333511		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000346916	ENST00000353555		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000346916		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000545507		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000333511		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000545507	ENST00000353555		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000346916		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000545507		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000333511		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000333511	ENST00000353555		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000346916		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000545507		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000333511		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000353555	ENST00000353555		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000346916		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000545507		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000333511		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000574970	ENST00000353555		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			BG333059	BSG	chr19	580384	-	BSG	chr19	580655	+
intron-3CDS	ENST00000447944	ENST00000447944		ChiTaRS3.1			BQ378709	PNPT1	chr2	55894211	+	PNPT1	chr2	55873579	+
5CDS-intron	ENST00000304636	ENST00000368149		ChiTaRS3.1			BF328959	COL3A1	chr2	189864615	+	ARHGAP18	chr6	129922220	+
5CDS-intron	ENST00000304636	ENST00000463225		ChiTaRS3.1			BF328959	COL3A1	chr2	189864615	+	ARHGAP18	chr6	129922220	+
5CDS-intron	ENST00000317840	ENST00000368149		ChiTaRS3.1			BF328959	COL3A1	chr2	189864615	+	ARHGAP18	chr6	129922220	+
5CDS-intron	ENST00000317840	ENST00000463225		ChiTaRS3.1			BF328959	COL3A1	chr2	189864615	+	ARHGAP18	chr6	129922220	+
intron-intron	ENST00000355653	ENST00000388712		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000355653	ENST00000388711		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000355653	ENST00000257504		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000587173	ENST00000388712		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000587173	ENST00000388711		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000587173	ENST00000257504		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000420567	ENST00000388712		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000420567	ENST00000388711		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
intron-intron	ENST00000420567	ENST00000257504		ChiTaRS3.1			AI909409	VAT1	chr17	41167707	-	GOLM1	chr9	88650286	+
5CDS-intron	ENST00000251595	ENST00000416488		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000536435		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000228289		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000541211		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000539248		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000542711		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000537565		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000536899		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000542986		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000541009		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000251595	ENST00000592241		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000416488		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000536435		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000228289		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000541211		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000539248		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000542711		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000537565		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000536899		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000542986		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000541009		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
5CDS-intron	ENST00000397806	ENST00000592241		ChiTaRS3.1			BU741869	HBA2	chr16	223544	-	ZNF268	chr12	133742961	-
intron-3UTR	ENST00000602662	ENST00000602662		ChiTaRS3.1			AW877859	MINOS1-NBL1	chr1	19984626	+	MINOS1-NBL1	chr1	19984225	+
intron-3CDS	ENST00000367255	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367255	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367255	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367255	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367255	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367255	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367255	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367255	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367255	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000356820	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000356820	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000356820	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000356820	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000423061	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000423061	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000423061	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000423061	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000448038	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000448038	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000448038	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000448038	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000341594	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000341594	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000341594	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000341594	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000265368	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000265368	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000265368	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000265368	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367253	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367253	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367253	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367253	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000367248	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367248	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000367248	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000367248	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000413186	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000413186	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000413186	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000413186	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000466159	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000466159	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000466159	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000466159	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000539504	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000539504	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000539504	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000539504	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000347037	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000347037	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000347037	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000347037	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000354674	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000354674	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000354674	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000354674	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000367255		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000356820		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000423061		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000448038		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000341594		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-3CDS	ENST00000495090	ENST00000265368		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000367253		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000367248		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000413186		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000466159		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000539504		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000495090	ENST00000347037		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-5UTR	ENST00000495090	ENST00000354674		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
intron-intron	ENST00000495090	ENST00000495090		ChiTaRS3.1			BF850739	SYNE1	chr6	152464826	-	SYNE1	chr6	152476105	-
Frame-shit	ENST00000575270	ENST00000575270		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000575270	ENST00000349223		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000575270	ENST00000329524		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000575270	ENST00000346183		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
5CDS-3UTR	ENST00000575270	ENST00000535127		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000349223	ENST00000575270		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000349223	ENST00000349223		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000349223	ENST00000329524		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000349223	ENST00000346183		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
5CDS-3UTR	ENST00000349223	ENST00000535127		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000329524	ENST00000575270		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000329524	ENST00000349223		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000329524	ENST00000329524		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000329524	ENST00000346183		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
5CDS-3UTR	ENST00000329524	ENST00000535127		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000346183	ENST00000575270		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000346183	ENST00000349223		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000346183	ENST00000329524		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
Frame-shit	ENST00000346183	ENST00000346183		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
5CDS-3UTR	ENST00000346183	ENST00000535127		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
3UTR-3CDS	ENST00000535127	ENST00000575270		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
3UTR-3CDS	ENST00000535127	ENST00000349223		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
3UTR-3CDS	ENST00000535127	ENST00000329524		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
3UTR-3CDS	ENST00000535127	ENST00000346183		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
3UTR-3UTR	ENST00000535127	ENST00000535127		ChiTaRS3.1			BE087229	NFATC3	chr16	68225678	+	NFATC3	chr16	68191771	+
intron-3UTR	ENST00000303052	ENST00000337620		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000303052	ENST00000396386		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000303052	ENST00000409747		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-intron	ENST00000303052	ENST00000497498		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000607537	ENST00000337620		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000607537	ENST00000396386		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000607537	ENST00000409747		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-intron	ENST00000607537	ENST00000497498		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000303032	ENST00000337620		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000303032	ENST00000396386		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-3UTR	ENST00000303032	ENST00000409747		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
intron-intron	ENST00000303032	ENST00000497498		ChiTaRS3.1			BQ379079	CSNK1G1	chr15	64493918	+	CBX3	chr7	26252221	+
3UTR-3UTR	ENST00000304698	ENST00000304698		ChiTaRS3.1			DT217289	FAM171B	chr2	187628947	+	FAM171B	chr2	187629815	-
intron-intron	ENST00000316881	ENST00000283415		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
intron-intron	ENST00000316881	ENST00000503252		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
intron-intron	ENST00000573108	ENST00000283415		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
intron-intron	ENST00000573108	ENST00000503252		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
intron-intron	ENST00000537230	ENST00000283415		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
intron-intron	ENST00000537230	ENST00000503252		ChiTaRS3.1			BG003119	TRIM25	chr17	54972559	+	LPCAT1	chr5	1476829	+
5UTR-intron	ENST00000451940	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000451940	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000456104	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433530	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000447424	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000433920	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
5UTR-intron	ENST00000446751	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000420424	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413722	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000417860	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000413961	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000458739	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000313949		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371098		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371075		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371100		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371099		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371102		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000464624		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000306120		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371095		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371085		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000354359		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000265620		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000306090		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000366446	ENST00000371081		ChiTaRS3.1			CV809249	NUTM2A-AS1	chr10	89048197	-	GNAS	chr20	57470659	+
intron-intron	ENST00000375019	ENST00000337002		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000375019	ENST00000480708		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000375019	ENST00000470355		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000375018	ENST00000337002		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000375018	ENST00000480708		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000375018	ENST00000470355		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000353234	ENST00000337002		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000353234	ENST00000480708		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000353234	ENST00000470355		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000540940	ENST00000337002		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000540940	ENST00000480708		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000540940	ENST00000470355		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000471846	ENST00000337002		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000471846	ENST00000480708		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-intron	ENST00000471846	ENST00000470355		ChiTaRS3.1			BE770019	ANKS6	chr9	101497804	-	SEC62	chr3	169702915	+
intron-3CDS	ENST00000441714	ENST00000441714		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-5UTR	ENST00000441714	ENST00000345046		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000441714	ENST00000458587		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000441714	ENST00000468947		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-3CDS	ENST00000345046	ENST00000441714		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-5UTR	ENST00000345046	ENST00000345046		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000345046	ENST00000458587		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000345046	ENST00000468947		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-3CDS	ENST00000458587	ENST00000441714		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-5UTR	ENST00000458587	ENST00000345046		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000458587	ENST00000458587		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000458587	ENST00000468947		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-3CDS	ENST00000468947	ENST00000441714		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-5UTR	ENST00000468947	ENST00000345046		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000468947	ENST00000458587		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000468947	ENST00000468947		ChiTaRS3.1			BF934379	BCAP31	chrX	152966233	+	BCAP31	chrX	152989839	-
intron-intron	ENST00000257497	ENST00000583456		ChiTaRS3.1			BF873709	ANXA1	chr9	75769780	-	MIR548AE2	chr16	48400529	+
intron-intron	ENST00000376911	ENST00000583456		ChiTaRS3.1			BF873709	ANXA1	chr9	75769780	-	MIR548AE2	chr16	48400529	+
intron-intron	ENST00000491192	ENST00000583456		ChiTaRS3.1			BF873709	ANXA1	chr9	75769780	-	MIR548AE2	chr16	48400529	+
intron-3CDS	ENST00000315757	ENST00000315757		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-3CDS	ENST00000315757	ENST00000423218		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-intron	ENST00000315757	ENST00000562826		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-3CDS	ENST00000423218	ENST00000315757		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-3CDS	ENST00000423218	ENST00000423218		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-intron	ENST00000423218	ENST00000562826		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-3CDS	ENST00000562826	ENST00000315757		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-3CDS	ENST00000562826	ENST00000423218		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-intron	ENST00000562826	ENST00000562826		ChiTaRS3.1			CN482769	ITGA11	chr15	68596206	-	ITGA11	chr15	68631899	-
intron-intron	ENST00000376007	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376007	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376007	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376007	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376007	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000469577	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000469577	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000469577	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000469577	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000469577	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376033	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376033	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376033	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376033	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000376033	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549037	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549037	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549037	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549037	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549037	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551794	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551794	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551794	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551794	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551794	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000435971	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000435971	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000435971	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000435971	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000435971	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485195	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485195	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485195	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485195	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485195	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000428775	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000428775	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000428775	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000428775	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000428775	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550674	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550674	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550674	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550674	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550674	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000548373	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000548373	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000548373	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000548373	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000548373	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000439762	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000439762	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000439762	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000439762	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000439762	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000416335	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000416335	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000416335	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000416335	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000416335	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000473169	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000473169	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000473169	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000473169	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000473169	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550109	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550109	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550109	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550109	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550109	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550609	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550609	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550609	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550609	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000550609	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000454306	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000454306	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000454306	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000454306	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000454306	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000468994	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000468994	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000468994	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000468994	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000468994	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000432252	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000432252	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000432252	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000432252	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000432252	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551341	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551341	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551341	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551341	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000551341	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547457	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547457	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547457	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547457	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547457	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383464	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383464	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383464	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383464	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383464	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000470109	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000470109	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000470109	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000470109	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000470109	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383455	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383455	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383455	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383455	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000383455	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547056	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547056	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547056	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547056	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000547056	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549383	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549383	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549383	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549383	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000549383	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000458561	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000458561	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000458561	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000458561	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000458561	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000466607	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000466607	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000466607	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000466607	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000466607	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000414956	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000414956	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000414956	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000414956	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000414956	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000547669	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000547669	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000547669	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000547669	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000547669	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000549768	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000549768	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000549768	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000549768	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000549768	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000430737	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000430737	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000430737	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000430737	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000430737	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000484613	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000484613	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000484613	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000484613	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000484613	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000422962	ENST00000262940		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000422962	ENST00000461209		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000422962	ENST00000449970		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000422962	ENST00000462172		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
5CDS-intron	ENST00000422962	ENST00000521822		ChiTaRS3.1			AW176439	PRRC2A	chr6	2934835	-	RASA4	chr7	102294126	+
intron-intron	ENST00000485577	ENST00000259075		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000457476		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000392749		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000461338		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000402568		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000406287		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000405852		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000485577	ENST00000403609		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000259075		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000457476		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000392749		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000461338		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000402568		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000406287		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000405852		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393313	ENST00000403609		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000259075		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000457476		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000392749		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000461338		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000402568		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000406287		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000405852		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000265827	ENST00000403609		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000259075		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000457476		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000392749		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000461338		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000402568		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000406287		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000405852		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
intron-intron	ENST00000393312	ENST00000403609		ChiTaRS3.1			AW812279	ZNF800	chr7	127012250	+	TANK	chr2	162061552	-
3UTR-intron	ENST00000361138	ENST00000416569		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
3UTR-intron	ENST00000361138	ENST00000304437		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
3UTR-intron	ENST00000361138	ENST00000297303		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
intron-intron	ENST00000471372	ENST00000416569		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
intron-intron	ENST00000471372	ENST00000304437		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
intron-intron	ENST00000471372	ENST00000297303		ChiTaRS3.1			CB243369	SMC5	chr9	72969400	-	XKR6	chr8	10990173	+
intron-intron	ENST00000371754	ENST00000371754		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000371754	ENST00000469991		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000371754	ENST00000371752		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000371754	ENST00000396105		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000469991	ENST00000371754		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000469991	ENST00000469991		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000469991	ENST00000371752		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000469991	ENST00000396105		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000371752	ENST00000371754		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000371752	ENST00000469991		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000371752	ENST00000371752		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000371752	ENST00000396105		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000396105	ENST00000371754		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-intron	ENST00000396105	ENST00000469991		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000396105	ENST00000371752		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3UTR	ENST00000396105	ENST00000396105		ChiTaRS3.1			BM687359	ZNFX1	chr20	47863121	+	ZNFX1	chr20	47863028	-
intron-3CDS	ENST00000335459	ENST00000335459		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000335459	ENST00000409520		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000335459	ENST00000409133		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-intron	ENST00000335459	ENST00000479944		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409520	ENST00000335459		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409520	ENST00000409520		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409520	ENST00000409133		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-intron	ENST00000409520	ENST00000479944		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409133	ENST00000335459		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409133	ENST00000409520		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000409133	ENST00000409133		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-intron	ENST00000409133	ENST00000479944		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000479944	ENST00000335459		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000479944	ENST00000409520		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-3CDS	ENST00000479944	ENST00000409133		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-intron	ENST00000479944	ENST00000479944		ChiTaRS3.1			CB140049	TRABD2A	chr2	85097435	+	TRABD2A	chr2	85066417	-
intron-intron	ENST00000591022	ENST00000356948		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000591022	ENST00000350092		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000591022	ENST00000349038		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000591022	ENST00000394601		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000456950	ENST00000356948		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000456950	ENST00000350092		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000456950	ENST00000349038		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000456950	ENST00000394601		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000412503	ENST00000356948		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000412503	ENST00000350092		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000412503	ENST00000349038		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000412503	ENST00000394601		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000293349	ENST00000356948		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000293349	ENST00000350092		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000293349	ENST00000349038		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000293349	ENST00000394601		ChiTaRS3.1			AI655629	PLEKHH3	chr17	40820160	+	PTBP1	chr19	805792	-
intron-intron	ENST00000374706	ENST00000349995		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000374706	ENST00000465942		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000265375	ENST00000349995		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000265375	ENST00000465942		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000339497	ENST00000349995		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000339497	ENST00000465942		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000374704	ENST00000349995		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000374704	ENST00000465942		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000492478	ENST00000349995		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000492478	ENST00000465942		ChiTaRS3.1			DB361739	CCNY	chr10	35802821	-	COG3	chr13	46043969	-
intron-intron	ENST00000356462	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000356462	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000356462	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000356462	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000356462	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000356462	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000400345	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000589054	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000256832	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000382850	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000256830	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000588516	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456986	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000435432	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000357895	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000586263	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
3UTR-intron	ENST00000456173	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000409426		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000441902		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000368890		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000368888		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000464105		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000431212	ENST00000414290		ChiTaRS3.1			BE172039	NEDD4L	chr18	56064705	-	PIP5K1A	chr1	151172777	+
intron-intron	ENST00000264052	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000264052	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000264052	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000264052	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000264052	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000264052	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409112	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000340126	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000427101	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409824	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409341	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000341950	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000540628		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000360429		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000568954		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000393524		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000356272		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-intron	ENST00000409897	ENST00000567016		ChiTaRS3.1			AW885579	SP100	chr2	231293440	-	PHLPP2	chr16	71717160	+
intron-3CDS	ENST00000494757	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000494757	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-3CDS	ENST00000323571	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000323571	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-3CDS	ENST00000585043	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000585043	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-3CDS	ENST00000394103	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000394103	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-3CDS	ENST00000536600	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000536600	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-3CDS	ENST00000583130	ENST00000379802		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000583130	ENST00000418664		ChiTaRS3.1			BI042619	WIPF2	chr17	38420639	-	DSP	chr6	7580448	+
intron-intron	ENST00000381344	ENST00000420329		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000381344	ENST00000560098		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000381344	ENST00000268184		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000381344	ENST00000558619		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000491735	ENST00000420329		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000491735	ENST00000560098		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000491735	ENST00000268184		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
intron-intron	ENST00000491735	ENST00000558619		ChiTaRS3.1			BE708329	IDI1	chr10	1091515	+	CRTC3	chr15	91122129	+
Frame-shit	ENST00000239926	ENST00000239926		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
Frame-shit	ENST00000239926	ENST00000421631		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000239926	ENST00000509812		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000239926	ENST00000515645		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
Frame-shit	ENST00000421631	ENST00000239926		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
Frame-shit	ENST00000421631	ENST00000421631		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000421631	ENST00000509812		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000421631	ENST00000515645		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
intron-3CDS	ENST00000509812	ENST00000239926		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
intron-3CDS	ENST00000509812	ENST00000421631		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
intron-3UTR	ENST00000509812	ENST00000509812		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
intron-3UTR	ENST00000509812	ENST00000515645		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
Frame-shit	ENST00000515645	ENST00000239926		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
Frame-shit	ENST00000515645	ENST00000421631		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000515645	ENST00000509812		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
5CDS-3UTR	ENST00000515645	ENST00000515645		ChiTaRS3.1			Z19219	MYOT	chr5	137222937	+	MYOT	chr5	137216535	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			H70869	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			H70869	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			H70869	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			H70869	INS-IGF2	chr11	2153891	+	INS-IGF2	chr11	2153342	+
intron-intron	ENST00000496811	ENST00000496811		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000496811	ENST00000308361		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000496811	ENST00000544526		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000496811	ENST00000329463		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000308361	ENST00000496811		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000308361	ENST00000308361		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000308361	ENST00000544526		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000308361	ENST00000329463		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000544526	ENST00000496811		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000544526	ENST00000308361		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000544526	ENST00000544526		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000544526	ENST00000329463		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000329463	ENST00000496811		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000329463	ENST00000308361		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000329463	ENST00000544526		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-intron	ENST00000329463	ENST00000329463		ChiTaRS3.1			AA251139	DHX36	chr3	154032708	+	DHX36	chr3	154031544	+
intron-3CDS	ENST00000269187	ENST00000269187		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000269187	ENST00000590986		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000269187	ENST00000440549		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000590986	ENST00000269187		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000590986	ENST00000590986		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000590986	ENST00000440549		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000440549	ENST00000269187		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000440549	ENST00000590986		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-3CDS	ENST00000440549	ENST00000440549		ChiTaRS3.1			BE166679	SLC39A6	chr18	33696740	+	SLC39A6	chr18	33703540	-
intron-intron	ENST00000256319	ENST00000283943		ChiTaRS3.1			BF056039	C14orf1	chr14	76117572	+	TRIP12	chr2	230670530	+
intron-intron	ENST00000256319	ENST00000389045		ChiTaRS3.1			BF056039	C14orf1	chr14	76117572	+	TRIP12	chr2	230670530	+
intron-intron	ENST00000256319	ENST00000389044		ChiTaRS3.1			BF056039	C14orf1	chr14	76117572	+	TRIP12	chr2	230670530	+
intron-intron	ENST00000256319	ENST00000543084		ChiTaRS3.1			BF056039	C14orf1	chr14	76117572	+	TRIP12	chr2	230670530	+
intron-intron	ENST00000256319	ENST00000409677		ChiTaRS3.1			BF056039	C14orf1	chr14	76117572	+	TRIP12	chr2	230670530	+
intron-intron	ENST00000316005	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000316005	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000316005	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370521	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370521	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370521	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370505	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370505	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370505	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370513	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370513	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000370513	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000544045	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000544045	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000544045	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000495119	ENST00000453153		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000495119	ENST00000453929		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000495119	ENST00000495505		ChiTaRS3.1			AW608179	PKN2	chr1	89189213	+	FASTKD1	chr2	170427634	-
intron-intron	ENST00000512033	ENST00000512033		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-intron	ENST00000512033	ENST00000296679		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-5UTR	ENST00000512033	ENST00000414719		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-5UTR	ENST00000512033	ENST00000507029		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-intron	ENST00000296679	ENST00000512033		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-intron	ENST00000296679	ENST00000296679		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-5UTR	ENST00000296679	ENST00000414719		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-5UTR	ENST00000296679	ENST00000507029		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-intron	ENST00000414719	ENST00000512033		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-intron	ENST00000414719	ENST00000296679		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-5UTR	ENST00000414719	ENST00000414719		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-5UTR	ENST00000414719	ENST00000507029		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-intron	ENST00000507029	ENST00000512033		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-intron	ENST00000507029	ENST00000296679		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-5UTR	ENST00000507029	ENST00000414719		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
5CDS-5UTR	ENST00000507029	ENST00000507029		ChiTaRS3.1			BE089339	WDR41	chr5	76745585	-	WDR41	chr5	76759052	-
intron-intron	ENST00000588552	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000588552	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000588552	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000262963	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000262963	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000262963	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000372412	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000372412	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000372412	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000348075	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000348075	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000348075	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000357368	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000357368	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000357368	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000353284	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000353284	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000353284	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000587303	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000587303	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000587303	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000588012	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000588012	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000588012	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000592099	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000592099	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000592099	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000590509	ENST00000302746		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000590509	ENST00000485460		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-intron	ENST00000590509	ENST00000474765		ChiTaRS3.1			BF930759	PTPRS	chr19	5206041	+	PDHB	chr3	58418162	-
intron-5UTR	ENST00000361204	ENST00000373019		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-intron	ENST00000361204	ENST00000448721		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-intron	ENST00000361204	ENST00000489537		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-5UTR	ENST00000491541	ENST00000373019		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-intron	ENST00000491541	ENST00000448721		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-intron	ENST00000491541	ENST00000489537		ChiTaRS3.1			X81789	SREBF2	chr22	42321501	+	SF3A3	chr1	38455697	-
intron-intron	ENST00000526660	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000526660	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000526660	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000526660	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000526660	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000526660	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000526660	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000526660	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000289575	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000289575	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000289575	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000289575	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000289575	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000289575	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000289575	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000289575	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000341411	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000341411	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000341411	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000341411	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000341411	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000341411	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000341411	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000341411	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000532236	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000532236	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000532236	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000532236	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000532236	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000532236	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000532236	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000532236	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000531756	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000531756	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000531756	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000531756	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000531756	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000531756	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000531756	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000531756	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000525650	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000525650	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000525650	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000525650	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000525650	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000525650	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000525650	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000525650	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000454962	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000454962	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000454962	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000454962	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000454962	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000454962	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-3UTR	ENST00000454962	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000454962	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000428359	ENST00000526660		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000428359	ENST00000289575		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000428359	ENST00000341411		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000428359	ENST00000532236		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000428359	ENST00000531756		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000428359	ENST00000525650		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-3UTR	ENST00000428359	ENST00000454962		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
intron-intron	ENST00000428359	ENST00000428359		ChiTaRS3.1			AW606939	SLCO2B1	chr11	74916237	-	SLCO2B1	chr11	74915940	+
3UTR-intron	ENST00000328735	ENST00000429029		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000262177		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000452797		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000443280		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000328735	ENST00000494267		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000429029		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000262177		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000452797		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000443280		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000330333	ENST00000494267		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000429029		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000262177		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000452797		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000443280		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000347667	ENST00000494267		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000429029		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000262177		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000452797		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000443280		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
3UTR-intron	ENST00000466122	ENST00000494267		ChiTaRS3.1			AW025939	BACE2	chr21	42648338	-	DNAJB6	chr7	157205574	-
intron-3UTR	ENST00000393469	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000393469	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000393469	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000423114	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000423114	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000423114	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000469902	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000469902	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000469902	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000314584	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000314584	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000314584	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000430155	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000430155	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000430155	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000465475	ENST00000597629		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-3UTR	ENST00000465475	ENST00000248673		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-intron	ENST00000465475	ENST00000594045		ChiTaRS3.1			BF094229	SLC12A8	chr3	124991033	+	ZFP36	chr19	39899709	-
intron-5UTR	ENST00000367498	ENST00000367498		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000367498	ENST00000459929		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000367498	ENST00000392007		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-intron	ENST00000367498	ENST00000367497		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000459929	ENST00000367498		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000459929	ENST00000459929		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000459929	ENST00000392007		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-intron	ENST00000459929	ENST00000367497		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000392007	ENST00000367498		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000392007	ENST00000459929		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000392007	ENST00000392007		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-intron	ENST00000392007	ENST00000367497		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000367497	ENST00000367498		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000367497	ENST00000459929		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-5UTR	ENST00000367497	ENST00000392007		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-intron	ENST00000367497	ENST00000367497		ChiTaRS3.1			BU619849	IVNS1ABP	chr1	185266962	+	IVNS1ABP	chr1	185280304	-
intron-3UTR	ENST00000474751	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000474751	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000474751	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000474751	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000474751	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000474751	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409991	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000292199	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409265	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000409109	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000474751		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000409991		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000292199		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000409265		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000409109		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
5CDS-3UTR	ENST00000525863	ENST00000525863		ChiTaRS3.1			BQ276409	NLRX1	chr11	119044719	+	NLRX1	chr11	119044351	+
intron-3UTR	ENST00000335295	ENST00000498272		ChiTaRS3.1			BI030799	HBB	chr11	5248197	+	TCEANC2	chr1	54561989	-
intron-3UTR	ENST00000335295	ENST00000234827		ChiTaRS3.1			BI030799	HBB	chr11	5248197	+	TCEANC2	chr1	54561989	-
intron-3UTR	ENST00000335295	ENST00000371331		ChiTaRS3.1			BI030799	HBB	chr11	5248197	+	TCEANC2	chr1	54561989	-
intron-intron	ENST00000379310	ENST00000394667		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000379310	ENST00000502534		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000379310	ENST00000394665		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000379310	ENST00000506397		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000379310	ENST00000394668		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000281496	ENST00000394667		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000281496	ENST00000502534		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000281496	ENST00000394665		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000281496	ENST00000506397		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000281496	ENST00000394668		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000478987	ENST00000394667		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000478987	ENST00000502534		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000478987	ENST00000394665		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000478987	ENST00000506397		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000478987	ENST00000394668		ChiTaRS3.1			AW897799	VWA8	chr13	42501108	+	RPL34	chr4	109550411	+
intron-intron	ENST00000388901	ENST00000373381		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000388901	ENST00000373380		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000388901	ENST00000373377		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000388901	ENST00000373388		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000388901	ENST00000489419		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000388901	ENST00000338325		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000373381		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000373380		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000373377		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000373388		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000489419		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000299259	ENST00000338325		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000373381		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000373380		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000373377		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000373388		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000489419		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000542928	ENST00000338325		ChiTaRS3.1			BE144019	COPS2	chr15	49428914	+	CSMD2	chr1	34595569	+
intron-intron	ENST00000556679	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000556679	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000456570	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000477310	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000425368	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000497841	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000417261	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000427888	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000459734	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000455591	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000433503	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000474621	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000424727	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000436692	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000473139	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000399981	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000419920	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000465211	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000375455	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000489605	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000426239	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
5CDS-intron	ENST00000419411	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000556679		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000456570		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000477310		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000425368		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000497841		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000417261		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000427888		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000459734		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000455591		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000433503		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000474621		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000424727		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000436692		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000473139		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000399981		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419920		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000465211		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000375455		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000489605		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000426239		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000419411		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
intron-intron	ENST00000460958	ENST00000460958		ChiTaRS3.1			AW363549	CFB	chr6	3251225	+	CFB	chr6	3249926	+
3UTR-intron	ENST00000395402	ENST00000396299		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000357727		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000396300		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000409603		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000396298		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000482692		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396299		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000357727		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396300		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000409603		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396298		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000482692		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396299		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000357727		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396300		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000409603		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396298		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000482692		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396299		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000357727		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396300		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000409603		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396298		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000482692		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396299		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000357727		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396300		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000409603		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396298		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000482692		ChiTaRS3.1			AU117299	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
5CDS-intron	ENST00000260129	ENST00000308624		ChiTaRS3.1			CB241959	TGS1	chr8	56698364	-	SNTG2	chr2	993072	-
5CDS-intron	ENST00000260129	ENST00000407292		ChiTaRS3.1			CB241959	TGS1	chr8	56698364	-	SNTG2	chr2	993072	-
5CDS-intron	ENST00000260129	ENST00000467759		ChiTaRS3.1			CB241959	TGS1	chr8	56698364	-	SNTG2	chr2	993072	-
intron-3CDS	ENST00000256190	ENST00000256190		ChiTaRS3.1			AU122739	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000256190	ENST00000527019		ChiTaRS3.1			AU122739	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-3CDS	ENST00000527019	ENST00000256190		ChiTaRS3.1			AU122739	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000527019	ENST00000527019		ChiTaRS3.1			AU122739	SBF2	chr11	9853826	-	SBF2	chr11	9861131	-
intron-intron	ENST00000300413	ENST00000399262		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000300413	ENST00000402544		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000300413	ENST00000399251		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000300413	ENST00000542921		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000300413	ENST00000489372		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000579618	ENST00000399262		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000579618	ENST00000402544		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000579618	ENST00000399251		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000579618	ENST00000542921		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000579618	ENST00000489372		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000582475	ENST00000399262		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000582475	ENST00000402544		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000582475	ENST00000399251		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000582475	ENST00000542921		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000582475	ENST00000489372		ChiTaRS3.1			BF808939	SNRPD1	chr18	19208415	-	JMJD1C	chr10	65139507	+
intron-intron	ENST00000358161	ENST00000358161		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000358161	ENST00000372739		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000358161	ENST00000372731		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000358161	ENST00000475367		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372739	ENST00000358161		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372739	ENST00000372739		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372739	ENST00000372731		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372739	ENST00000475367		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372731	ENST00000358161		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372731	ENST00000372739		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372731	ENST00000372731		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000372731	ENST00000475367		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000475367	ENST00000358161		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000475367	ENST00000372739		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000475367	ENST00000372731		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000475367	ENST00000475367		ChiTaRS3.1			DW424339	SPTAN1	chr9	131319497	+	SPTAN1	chr9	131318869	+
intron-intron	ENST00000274242	ENST00000520539		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000274242	ENST00000220959		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000274242	ENST00000518205		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000274242	ENST00000521922		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000274242	ENST00000519528		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000509877	ENST00000520539		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000509877	ENST00000220959		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000509877	ENST00000518205		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000509877	ENST00000521922		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000509877	ENST00000519528		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000504562	ENST00000520539		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000504562	ENST00000220959		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000504562	ENST00000518205		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000504562	ENST00000521922		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000504562	ENST00000519528		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000508493	ENST00000520539		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000508493	ENST00000220959		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000508493	ENST00000518205		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000508493	ENST00000521922		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000508493	ENST00000519528		ChiTaRS3.1			BF003129	RPL37	chr5	40832628	+	UBR5	chr8	103337293	+
intron-intron	ENST00000589876	ENST00000245206		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000589876	ENST00000434819		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000589876	ENST00000564400		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000245925	ENST00000245206		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000245925	ENST00000434819		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000245925	ENST00000564400		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000536630	ENST00000245206		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000536630	ENST00000434819		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000536630	ENST00000564400		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000587152	ENST00000245206		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000587152	ENST00000434819		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000587152	ENST00000564400		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000586902	ENST00000245206		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000586902	ENST00000434819		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-intron	ENST00000586902	ENST00000564400		ChiTaRS3.1			BF365549	EML2	chr19	46121892	+	GOT2	chr16	58753399	-
intron-3CDS	ENST00000261837	ENST00000367459		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000261837	ENST00000469578		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000396335	ENST00000367459		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000396335	ENST00000469578		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000358784	ENST00000367459		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000358784	ENST00000469578		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000559348	ENST00000367459		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000559348	ENST00000469578		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000560116	ENST00000367459		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000560116	ENST00000469578		ChiTaRS3.1			S59049	GNB5	chr15	52420431	+	RGS1	chr1	192544937	+
intron-3CDS	ENST00000244217	ENST00000375258		ChiTaRS3.1			DR980649	MCEE	chr2	71357359	+	METTL8	chr2	172180849	-
intron-5UTR	ENST00000244217	ENST00000463392		ChiTaRS3.1			DR980649	MCEE	chr2	71357359	+	METTL8	chr2	172180849	-
intron-3CDS	ENST00000462609	ENST00000375258		ChiTaRS3.1			DR980649	MCEE	chr2	71357359	+	METTL8	chr2	172180849	-
intron-5UTR	ENST00000462609	ENST00000463392		ChiTaRS3.1			DR980649	MCEE	chr2	71357359	+	METTL8	chr2	172180849	-
5CDS-3UTR	ENST00000374987	ENST00000374987		ChiTaRS3.1			BF761699	APEX2	chrX	55033633	-	APEX2	chrX	55033951	+
5CDS-intron	ENST00000374987	ENST00000471758		ChiTaRS3.1			BF761699	APEX2	chrX	55033633	-	APEX2	chrX	55033951	+
intron-3UTR	ENST00000471758	ENST00000374987		ChiTaRS3.1			BF761699	APEX2	chrX	55033633	-	APEX2	chrX	55033951	+
intron-intron	ENST00000471758	ENST00000471758		ChiTaRS3.1			BF761699	APEX2	chrX	55033633	-	APEX2	chrX	55033951	+
intron-intron	ENST00000472876	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000472876	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395527	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395529	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000261503	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395530	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000536879	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395522	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000395525	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000472876		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000395527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000395529		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000261503		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000395530		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000536879		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000395522		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000395525		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
intron-intron	ENST00000584527	ENST00000584527		ChiTaRS3.1			BF908879	SPECC1	chr17	20107643	-	SPECC1	chr17	20109226	-
3UTR-intron	ENST00000483354	ENST00000483354		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000483354	ENST00000380113		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000483354	ENST00000455664		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000483354	ENST00000399838		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-intron	ENST00000380113	ENST00000483354		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000380113	ENST00000380113		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000380113	ENST00000455664		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000380113	ENST00000399838		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-intron	ENST00000455664	ENST00000483354		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000455664	ENST00000380113		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000455664	ENST00000455664		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000455664	ENST00000399838		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-intron	ENST00000399838	ENST00000483354		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000399838	ENST00000380113		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000399838	ENST00000455664		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-5UTR	ENST00000399838	ENST00000399838		ChiTaRS3.1			BM545059	ITPA	chr20	3204225	-	ITPA	chr20	3190175	+
3UTR-3UTR	ENST00000380607	ENST00000380607		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
3UTR-intron	ENST00000380607	ENST00000467085		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
3UTR-intron	ENST00000380607	ENST00000537391		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-3UTR	ENST00000467085	ENST00000380607		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-intron	ENST00000467085	ENST00000467085		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-intron	ENST00000467085	ENST00000537391		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-3UTR	ENST00000537391	ENST00000380607		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-intron	ENST00000537391	ENST00000467085		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-intron	ENST00000537391	ENST00000537391		ChiTaRS3.1			BF934809	SH3GL2	chr9	17796156	-	SH3GL2	chr9	17796531	+
intron-intron	ENST00000296503	ENST00000378847		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000296503	ENST00000487696		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000296503	ENST00000378845		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000438704	ENST00000378847		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000438704	ENST00000487696		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000438704	ENST00000378845		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000446922	ENST00000378847		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000446922	ENST00000487696		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000446922	ENST00000378845		ChiTaRS3.1			BF062889	HMGB2	chr4	174253195	+	CAMK1D	chr10	12834956	-
intron-intron	ENST00000284262	ENST00000464611		ChiTaRS3.1			BF376499	JPH3	chr16	87715835	+	ACTB	chr7	5567272	-
intron-3UTR	ENST00000284262	ENST00000331789		ChiTaRS3.1			BF376499	JPH3	chr16	87715835	+	ACTB	chr7	5567272	-
intron-intron	ENST00000563609	ENST00000464611		ChiTaRS3.1			BF376499	JPH3	chr16	87715835	+	ACTB	chr7	5567272	-
intron-3UTR	ENST00000563609	ENST00000331789		ChiTaRS3.1			BF376499	JPH3	chr16	87715835	+	ACTB	chr7	5567272	-
intron-intron	ENST00000494143	ENST00000378330		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000494143	ENST00000301030		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000494143	ENST00000563291		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000494143	ENST00000567736		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000287078	ENST00000378330		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000287078	ENST00000301030		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000287078	ENST00000563291		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000287078	ENST00000567736		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000335494	ENST00000378330		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000335494	ENST00000301030		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000335494	ENST00000563291		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000335494	ENST00000567736		ChiTaRS3.1			BC088729	TYSND1	chr10	71898925	-	ANKRD11	chr16	89365287	+
intron-intron	ENST00000584522	ENST00000584522		ChiTaRS3.1			CA422259	TP53I13	chr17	27899890	-	TP53I13	chr17	27899059	+
intron-intron	ENST00000584522	ENST00000301057		ChiTaRS3.1			CA422259	TP53I13	chr17	27899890	-	TP53I13	chr17	27899059	+
5CDS-intron	ENST00000301057	ENST00000584522		ChiTaRS3.1			CA422259	TP53I13	chr17	27899890	-	TP53I13	chr17	27899059	+
5CDS-intron	ENST00000301057	ENST00000301057		ChiTaRS3.1			CA422259	TP53I13	chr17	27899890	-	TP53I13	chr17	27899059	+
intron-3CDS	ENST00000448526	ENST00000382518		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
intron-3CDS	ENST00000448526	ENST00000009180		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
intron-5UTR	ENST00000448526	ENST00000382515		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
intron-3UTR	ENST00000448526	ENST00000481267		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000244741	ENST00000382518		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000244741	ENST00000009180		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-5UTR	ENST00000244741	ENST00000382515		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3UTR	ENST00000244741	ENST00000481267		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000405375	ENST00000382518		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000405375	ENST00000009180		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-5UTR	ENST00000405375	ENST00000382515		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3UTR	ENST00000405375	ENST00000481267		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000373711	ENST00000382518		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3CDS	ENST00000373711	ENST00000009180		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-5UTR	ENST00000373711	ENST00000382515		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
5UTR-3UTR	ENST00000373711	ENST00000481267		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
3UTR-3CDS	ENST00000478800	ENST00000382518		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
3UTR-3CDS	ENST00000478800	ENST00000009180		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
3UTR-5UTR	ENST00000478800	ENST00000382515		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
3UTR-3UTR	ENST00000478800	ENST00000481267		ChiTaRS3.1			HM245393	CDKN1A	chr6	36646575	+	CD9	chr12	6334590	+
intron-intron	ENST00000378330	ENST00000342160		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000378330	ENST00000262854		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000378330	ENST00000474288		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000378330	ENST00000218328		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000301030	ENST00000342160		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000301030	ENST00000262854		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000301030	ENST00000474288		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000301030	ENST00000218328		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000563291	ENST00000342160		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000563291	ENST00000262854		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000563291	ENST00000474288		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000563291	ENST00000218328		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000567736	ENST00000342160		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000567736	ENST00000262854		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000567736	ENST00000474288		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-intron	ENST00000567736	ENST00000218328		ChiTaRS3.1			BF930699	ANKRD11	chr16	89349935	+	HUWE1	chrX	53692736	-
intron-3CDS	ENST00000374810	ENST00000393784		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374810	ENST00000519860		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374810	ENST00000523291		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374810	ENST00000326654		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-3CDS	ENST00000374809	ENST00000393784		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374809	ENST00000519860		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374809	ENST00000523291		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-intron	ENST00000374809	ENST00000326654		ChiTaRS3.1			BC023529	TP53INP2	chr20	33292099	-	ERGIC1	chr5	172359497	+
intron-3CDS	ENST00000303407	ENST00000303407		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000303407	ENST00000473349		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000303407	ENST00000371834		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000303407	ENST00000357885		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000473349	ENST00000303407		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000473349	ENST00000473349		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000473349	ENST00000371834		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000473349	ENST00000357885		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000371834	ENST00000303407		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000371834	ENST00000473349		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000371834	ENST00000371834		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000371834	ENST00000357885		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3CDS	ENST00000357885	ENST00000303407		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-5UTR	ENST00000357885	ENST00000473349		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-3UTR	ENST00000357885	ENST00000371834		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
intron-intron	ENST00000357885	ENST00000357885		ChiTaRS3.1			BX116849	BRD3	chr9	136898246	-	BRD3	chr9	136901421	-
5CDS-3UTR	ENST00000254719	ENST00000254719		ChiTaRS3.1			BE816249	RPA1	chr17	1798355	+	RPA1	chr17	1800803	-
5CDS-intron	ENST00000254719	ENST00000573924		ChiTaRS3.1			BE816249	RPA1	chr17	1798355	+	RPA1	chr17	1800803	-
intron-3UTR	ENST00000573924	ENST00000254719		ChiTaRS3.1			BE816249	RPA1	chr17	1798355	+	RPA1	chr17	1800803	-
intron-intron	ENST00000573924	ENST00000573924		ChiTaRS3.1			BE816249	RPA1	chr17	1798355	+	RPA1	chr17	1800803	-
intron-intron	ENST00000378847	ENST00000378847		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000378847	ENST00000487696		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000378847	ENST00000378845		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000487696	ENST00000378847		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000487696	ENST00000487696		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000487696	ENST00000378845		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000378845	ENST00000378847		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000378845	ENST00000487696		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
intron-intron	ENST00000378845	ENST00000378845		ChiTaRS3.1			AU185429	CAMK1D	chr10	12703735	+	CAMK1D	chr10	12692915	+
5UTR-3CDS	ENST00000311117	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000311117	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000311117	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000311117	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000311117	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000311117	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000311117	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000311117	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334914	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334914	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334914	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334914	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334914	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334914	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334914	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334914	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-3CDS	ENST00000257745	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-3CDS	ENST00000257745	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-3CDS	ENST00000257745	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-3CDS	ENST00000257745	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-3CDS	ENST00000257745	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-intron	ENST00000257745	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-intron	ENST00000257745	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-intron	ENST00000257745	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334877	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334877	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334877	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334877	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000334877	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334877	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334877	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000334877	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000476671	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000476671	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000476671	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000476671	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-3CDS	ENST00000476671	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000476671	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000476671	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
5UTR-intron	ENST00000476671	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-3CDS	ENST00000480368	ENST00000447467		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-3CDS	ENST00000480368	ENST00000324972		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-3CDS	ENST00000480368	ENST00000537881		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-3CDS	ENST00000480368	ENST00000437599		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-3CDS	ENST00000480368	ENST00000359388		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-intron	ENST00000480368	ENST00000413338		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-intron	ENST00000480368	ENST00000457059		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
3UTR-intron	ENST00000480368	ENST00000497626		ChiTaRS3.1			DA518309	KMT2E	chr7	104654982	+	DYNC1I1	chr7	95499191	+
intron-intron	ENST00000536939	ENST00000536939		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000536939	ENST00000456907		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-3UTR	ENST00000536939	ENST00000377793		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000536939	ENST00000539656		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000536939	ENST00000542163		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000456907	ENST00000536939		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000456907	ENST00000456907		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-3UTR	ENST00000456907	ENST00000377793		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000456907	ENST00000539656		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000456907	ENST00000542163		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
3UTR-intron	ENST00000377793	ENST00000536939		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
3UTR-intron	ENST00000377793	ENST00000456907		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
3UTR-3UTR	ENST00000377793	ENST00000377793		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
3UTR-intron	ENST00000377793	ENST00000539656		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
3UTR-intron	ENST00000377793	ENST00000542163		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000539656	ENST00000536939		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000539656	ENST00000456907		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-3UTR	ENST00000539656	ENST00000377793		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000539656	ENST00000539656		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000539656	ENST00000542163		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000542163	ENST00000536939		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000542163	ENST00000456907		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-3UTR	ENST00000542163	ENST00000377793		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000542163	ENST00000539656		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000542163	ENST00000542163		ChiTaRS3.1			CN481769	NAA40	chr11	63724128	+	NAA40	chr11	63722201	+
intron-intron	ENST00000297071	ENST00000297071		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000297071	ENST00000392502		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000297071	ENST00000538367		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000297071	ENST00000474586		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000392502	ENST00000297071		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000392502	ENST00000392502		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000392502	ENST00000538367		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000392502	ENST00000474586		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000538367	ENST00000297071		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000538367	ENST00000392502		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000538367	ENST00000538367		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000538367	ENST00000474586		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000474586	ENST00000297071		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000474586	ENST00000392502		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000474586	ENST00000538367		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000474586	ENST00000474586		ChiTaRS3.1			BF356549	TRA2A	chr7	23563520	+	TRA2A	chr7	23563645	-
intron-intron	ENST00000321556	ENST00000576629		ChiTaRS3.1			AF119889	PINK1	chr1	20961633	-	LRRC37A2	chr17	44656993	-
intron-intron	ENST00000321556	ENST00000333412		ChiTaRS3.1			AF119889	PINK1	chr1	20961633	-	LRRC37A2	chr17	44656993	-
intron-intron	ENST00000492302	ENST00000576629		ChiTaRS3.1			AF119889	PINK1	chr1	20961633	-	LRRC37A2	chr17	44656993	-
intron-intron	ENST00000492302	ENST00000333412		ChiTaRS3.1			AF119889	PINK1	chr1	20961633	-	LRRC37A2	chr17	44656993	-
intron-intron	ENST00000422989	ENST00000495313		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000422989	ENST00000320188		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000422989	ENST00000608796		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-intron	ENST00000422989	ENST00000419867		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000422989	ENST00000418976		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-intron	ENST00000601520	ENST00000495313		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000601520	ENST00000320188		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000601520	ENST00000608796		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-intron	ENST00000601520	ENST00000419867		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000601520	ENST00000418976		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-intron	ENST00000602269	ENST00000495313		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000602269	ENST00000320188		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000602269	ENST00000608796		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-intron	ENST00000602269	ENST00000419867		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
intron-3UTR	ENST00000602269	ENST00000418976		ChiTaRS3.1			AA041439	IRGQ	chr19	44090139	-	SWI5	chr9	131051030	+
Frame-shit	ENST00000260970	ENST00000260970		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000260970	ENST00000409714		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000462903		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000448752		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000260970	ENST00000482772		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000409714	ENST00000260970		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000409714	ENST00000409714		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000462903		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000448752		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000409714	ENST00000482772		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000260970		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000462903	ENST00000409714		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000462903		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000448752		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-intron	ENST00000462903	ENST00000482772		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
In-frame	ENST00000448752	ENST00000260970		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
Frame-shit	ENST00000448752	ENST00000409714		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000462903		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000448752		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
5CDS-intron	ENST00000448752	ENST00000482772		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000260970		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-3CDS	ENST00000482772	ENST00000409714		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000462903		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000448752		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
3UTR-intron	ENST00000482772	ENST00000482772		ChiTaRS3.1			BU622289	PPIG	chr2	170492946	-	PPIG	chr2	170493697	-
intron-3CDS	ENST00000566813	ENST00000537675		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-3CDS	ENST00000566813	ENST00000380032		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-3CDS	ENST00000566813	ENST00000380031		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-5UTR	ENST00000566813	ENST00000484994		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-3CDS	ENST00000262506	ENST00000537675		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-3CDS	ENST00000262506	ENST00000380032		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-3CDS	ENST00000262506	ENST00000380031		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-5UTR	ENST00000262506	ENST00000484994		ChiTaRS3.1			DB448299	CSNK2A2	chr16	58231092	+	EQTN	chr9	27294402	-
intron-intron	ENST00000434581	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000434581	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000334667	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000334667	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000519784	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000519784	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000523073	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000523073	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000521229	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000521229	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000522576	ENST00000285398		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
intron-intron	ENST00000522576	ENST00000493187		ChiTaRS3.1			AI653149	TMEM68	chr8	56652299	+	ERCC3	chr2	128050186	+
3UTR-3UTR	ENST00000373585	ENST00000242059		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-3UTR	ENST00000373585	ENST00000426154		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000425819		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000434476		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000494620		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000409570		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000409497		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
3UTR-intron	ENST00000373585	ENST00000416113		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-3UTR	ENST00000466265	ENST00000242059		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-3UTR	ENST00000466265	ENST00000426154		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000425819		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000434476		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000494620		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000409570		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000409497		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-intron	ENST00000466265	ENST00000416113		ChiTaRS3.1			BE078269	DDX50	chr10	70706406	-	SCRN1	chr7	29960064	+
intron-3UTR	ENST00000491129	ENST00000266718		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
intron-intron	ENST00000491129	ENST00000548071		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
intron-3UTR	ENST00000046087	ENST00000266718		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
intron-intron	ENST00000046087	ENST00000548071		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
intron-3UTR	ENST00000419417	ENST00000266718		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
intron-intron	ENST00000419417	ENST00000548071		ChiTaRS3.1			AI049509	ZPBP	chr7	50087251	-	LUM	chr12	91497325	+
5CDS-intron	ENST00000357085	ENST00000503278		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
5CDS-intron	ENST00000357085	ENST00000425103		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
5CDS-intron	ENST00000357085	ENST00000307659		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
5CDS-intron	ENST00000349458	ENST00000503278		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
5CDS-intron	ENST00000349458	ENST00000425103		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
5CDS-intron	ENST00000349458	ENST00000307659		ChiTaRS3.1			BF895949	TRIM38	chr6	25966915	+	KIAA0232	chr4	6870207	+
intron-3UTR	ENST00000372870	ENST00000336219		ChiTaRS3.1			CB157759	SLC27A4	chr9	131104870	-	CDCA4	chr14	105476438	-
intron-3UTR	ENST00000372870	ENST00000392590		ChiTaRS3.1			CB157759	SLC27A4	chr9	131104870	-	CDCA4	chr14	105476438	-
intron-3UTR	ENST00000300456	ENST00000336219		ChiTaRS3.1			CB157759	SLC27A4	chr9	131104870	-	CDCA4	chr14	105476438	-
intron-3UTR	ENST00000300456	ENST00000392590		ChiTaRS3.1			CB157759	SLC27A4	chr9	131104870	-	CDCA4	chr14	105476438	-
5CDS-intron	ENST00000307098	ENST00000284273		ChiTaRS3.1			BF354149	SPRR1B	chr1	153004905	+	UBASH3B	chr11	122530953	-
5CDS-intron	ENST00000307098	ENST00000525711		ChiTaRS3.1			BF354149	SPRR1B	chr1	153004905	+	UBASH3B	chr11	122530953	-
5CDS-intron	ENST00000392661	ENST00000284273		ChiTaRS3.1			BF354149	SPRR1B	chr1	153004905	+	UBASH3B	chr11	122530953	-
5CDS-intron	ENST00000392661	ENST00000525711		ChiTaRS3.1			BF354149	SPRR1B	chr1	153004905	+	UBASH3B	chr11	122530953	-
Frame-shit	ENST00000360289	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000360289	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000360289	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000360289	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000360289	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
5CDS-3UTR	ENST00000360289	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000448642	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000448642	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000448642	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000448642	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000448642	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
5CDS-3UTR	ENST00000448642	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000404387	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000404387	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000404387	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000404387	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000404387	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
5CDS-3UTR	ENST00000404387	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000298649	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000298649	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000298649	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000298649	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000298649	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
5CDS-3UTR	ENST00000298649	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000359426	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000359426	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000359426	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000359426	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
Frame-shit	ENST00000359426	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
5CDS-3UTR	ENST00000359426	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3CDS	ENST00000494253	ENST00000360289		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3CDS	ENST00000494253	ENST00000448642		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3CDS	ENST00000494253	ENST00000404387		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3CDS	ENST00000494253	ENST00000298649		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3CDS	ENST00000494253	ENST00000359426		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
3UTR-3UTR	ENST00000494253	ENST00000494253		ChiTaRS3.1			W28999	HK1	chr10	71142439	-	HK1	chr10	71144584	+
intron-3CDS	ENST00000394480	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000557856	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000357724	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000355254	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000360948	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000542733	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558676	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000317501	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558306	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000540489	ENST00000335754		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000488802		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000482349		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000231909		ChiTaRS3.1			AI651749	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-intron	ENST00000262873	ENST00000545334		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000537927		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000318304		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000535047		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000542629		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000228425		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000262873	ENST00000541633		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000545334		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000537927		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000318304		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000535047		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000542629		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000228425		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-intron	ENST00000481922	ENST00000541633		ChiTaRS3.1			AA449769	MYH7B	chr20	33590345	+	PPFIBP1	chr12	27746674	-
intron-3UTR	ENST00000394071	ENST00000395290		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000358597		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000395292		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000310513		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000361904		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000394071	ENST00000539455		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000531165		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000394071	ENST00000532048		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000395290		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000358597		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000395292		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000310513		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000361904		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000286523	ENST00000539455		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000531165		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000286523	ENST00000532048		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000395290		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000358597		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000395292		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000310513		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000361904		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-5UTR	ENST00000486739	ENST00000539455		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000531165		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
intron-3UTR	ENST00000486739	ENST00000532048		ChiTaRS3.1			BE819609	ELMSAN1	chr14	74184772	+	CELF1	chr11	47493771	+
3UTR-intron	ENST00000249647	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000249647	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000566141	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000564153	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
3UTR-intron	ENST00000349777	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000567094	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000379441		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000179765		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000551812		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000549884		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-intron	ENST00000397138	ENST00000553222		ChiTaRS3.1			AW978559	SNAP23	chr15	42824565	-	BAZ2A	chr12	57003085	+
intron-3CDS	ENST00000358825	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000358825	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000358825	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000358825	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000358825	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000304538	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000304538	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000304538	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000304538	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000304538	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000360871	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000360871	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000360871	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000360871	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000360871	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000423662	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000423662	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000423662	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000423662	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000423662	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000528746	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000528746	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000528746	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000528746	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000528746	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000526082	ENST00000322507		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000526082	ENST00000345356		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000526082	ENST00000416123		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-3CDS	ENST00000526082	ENST00000483888		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
intron-intron	ENST00000526082	ENST00000511023		ChiTaRS3.1			BF843989	PRDM10	chr11	129784637	+	COL12A1	chr6	75828796	-
3UTR-3UTR	ENST00000287652	ENST00000287652		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
3UTR-3UTR	ENST00000287652	ENST00000448281		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
3UTR-intron	ENST00000287652	ENST00000496355		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
3UTR-3UTR	ENST00000448281	ENST00000287652		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
3UTR-3UTR	ENST00000448281	ENST00000448281		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
3UTR-intron	ENST00000448281	ENST00000496355		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
intron-3UTR	ENST00000496355	ENST00000287652		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
intron-3UTR	ENST00000496355	ENST00000448281		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
intron-intron	ENST00000496355	ENST00000496355		ChiTaRS3.1			BI026139	TATDN2	chr3	10321824	-	TATDN2	chr3	10322009	+
5CDS-3UTR	ENST00000299767	ENST00000346798		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-3UTR	ENST00000299767	ENST00000354192		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-3UTR	ENST00000299767	ENST00000348990		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-3UTR	ENST00000299767	ENST00000357903		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-3UTR	ENST00000299767	ENST00000358918		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-3UTR	ENST00000299767	ENST00000359726		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-intron	ENST00000299767	ENST00000448388		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-intron	ENST00000299767	ENST00000440126		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-intron	ENST00000299767	ENST00000439274		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
5CDS-intron	ENST00000299767	ENST00000474136		ChiTaRS3.1			BU607969	HSP90B1	chr12	104341140	-	APP	chr21	27253243	-
intron-3CDS	ENST00000544484	ENST00000544484		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544484	ENST00000357008		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544484	ENST00000309577		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544484	ENST00000544040		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-intron	ENST00000544484	ENST00000540960		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000357008	ENST00000544484		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000357008	ENST00000357008		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000357008	ENST00000309577		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000357008	ENST00000544040		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-intron	ENST00000357008	ENST00000540960		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000309577	ENST00000544484		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000309577	ENST00000357008		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000309577	ENST00000309577		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000309577	ENST00000544040		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-intron	ENST00000309577	ENST00000540960		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544040	ENST00000544484		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544040	ENST00000357008		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544040	ENST00000309577		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000544040	ENST00000544040		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-intron	ENST00000544040	ENST00000540960		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000540960	ENST00000544484		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000540960	ENST00000357008		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000540960	ENST00000309577		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000540960	ENST00000544040		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-intron	ENST00000540960	ENST00000540960		ChiTaRS3.1			BU430929	CHD4	chr12	6679508	+	CHD4	chr12	6690497	-
intron-3CDS	ENST00000590923	ENST00000590923		ChiTaRS3.1			CB162929	AP1M2	chr19	10697981	+	AP1M2	chr19	10694303	-
intron-3CDS	ENST00000590923	ENST00000250244		ChiTaRS3.1			CB162929	AP1M2	chr19	10697981	+	AP1M2	chr19	10694303	-
intron-3CDS	ENST00000250244	ENST00000590923		ChiTaRS3.1			CB162929	AP1M2	chr19	10697981	+	AP1M2	chr19	10694303	-
intron-3CDS	ENST00000250244	ENST00000250244		ChiTaRS3.1			CB162929	AP1M2	chr19	10697981	+	AP1M2	chr19	10694303	-
intron-intron	ENST00000321685	ENST00000390665		ChiTaRS3.1			H40939	DNAJC4	chr11	64001543	-	PPP2R3B	chrY	257141	-
3UTR-intron	ENST00000355040	ENST00000390665		ChiTaRS3.1			H40939	DNAJC4	chr11	64001543	-	PPP2R3B	chrY	257141	-
5CDS-intron	ENST00000321460	ENST00000390665		ChiTaRS3.1			H40939	DNAJC4	chr11	64001543	-	PPP2R3B	chrY	257141	-
3UTR-3UTR	ENST00000504986	ENST00000504986		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-intron	ENST00000504986	ENST00000513702		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000504986	ENST00000325094		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-3UTR	ENST00000513702	ENST00000504986		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-intron	ENST00000513702	ENST00000513702		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-3UTR	ENST00000513702	ENST00000325094		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000325094	ENST00000504986		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-intron	ENST00000325094	ENST00000513702		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
3UTR-3UTR	ENST00000325094	ENST00000325094		ChiTaRS3.1			AA516069	TMEM33	chr4	41961481	+	TMEM33	chr4	41961572	-
intron-5UTR	ENST00000296043	ENST00000262097		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000296043	ENST00000381733		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000296043	ENST00000417108		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-5UTR	ENST00000296043	ENST00000520781		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000296043	ENST00000314146		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-5UTR	ENST00000296043	ENST00000520051		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-5UTR	ENST00000473602	ENST00000262097		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000473602	ENST00000381733		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000473602	ENST00000417108		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-5UTR	ENST00000473602	ENST00000520781		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-intron	ENST00000473602	ENST00000314146		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-5UTR	ENST00000473602	ENST00000520051		ChiTaRS3.1			DB172989	SHROOM3	chr4	77547922	+	ASAH1	chr8	17941617	-
intron-3CDS	ENST00000345136	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000345136	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000345136	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000345136	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000357649	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000357649	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000357649	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000357649	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354589	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354589	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354589	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354589	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000398774	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000398774	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000398774	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000398774	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000322810	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000322810	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000322810	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000322810	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354958	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354958	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000354958	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000354958	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000356346	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000356346	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000356346	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000356346	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000436759	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000436759	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000436759	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000436759	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000527096	ENST00000584601		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000527096	ENST00000406381		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-3CDS	ENST00000527096	ENST00000541774		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000445658		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000540147		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000584450		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000269571		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000578199		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000540042		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000527096	ENST00000584888		ChiTaRS3.1			BE696969	PLEC	chr8	145012593	-	ERBB2	chr17	37864712	-
intron-intron	ENST00000497452	ENST00000294868		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000497452	ENST00000287713		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000497452	ENST00000473046		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000462431	ENST00000294868		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000462431	ENST00000287713		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000462431	ENST00000473046		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000486168	ENST00000294868		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000486168	ENST00000287713		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
intron-intron	ENST00000486168	ENST00000473046		ChiTaRS3.1			M20605	IL12A-AS1	chr3	159765525	-	NMNAT2	chr1	183372576	+
3UTR-intron	ENST00000354883	ENST00000355387		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000354883	ENST00000361799		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000354883	ENST00000372247		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000354883	ENST00000443020		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000354883	ENST00000480686		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000336733	ENST00000355387		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000336733	ENST00000361799		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000336733	ENST00000372247		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000336733	ENST00000443020		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000336733	ENST00000480686		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000536651	ENST00000355387		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000536651	ENST00000361799		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000536651	ENST00000372247		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000536651	ENST00000443020		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000536651	ENST00000480686		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000413054	ENST00000355387		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000413054	ENST00000361799		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000413054	ENST00000372247		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000413054	ENST00000443020		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
3UTR-intron	ENST00000413054	ENST00000480686		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000484768	ENST00000355387		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000484768	ENST00000361799		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000484768	ENST00000372247		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000484768	ENST00000443020		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000484768	ENST00000480686		ChiTaRS3.1			BF933539	SLC25A26	chr3	66428249	-	RNF220	chr1	45108206	+
intron-intron	ENST00000344041	ENST00000392650		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000344041	ENST00000388726		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000344041	ENST00000410094		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000475788	ENST00000392650		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000475788	ENST00000388726		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000475788	ENST00000410094		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000405243	ENST00000392650		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000405243	ENST00000388726		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000405243	ENST00000410094		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000401957	ENST00000392650		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000401957	ENST00000388726		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
intron-intron	ENST00000401957	ENST00000410094		ChiTaRS3.1			CV346479	RAPGEF5	chr7	22358146	+	SDK2	chr17	71491908	+
In-frame	ENST00000377107	ENST00000377107		ChiTaRS3.1			CD517199	USP11	chrX	47106772	+	USP11	chrX	47104465	+
In-frame	ENST00000377107	ENST00000218348		ChiTaRS3.1			CD517199	USP11	chrX	47106772	+	USP11	chrX	47104465	+
In-frame	ENST00000218348	ENST00000377107		ChiTaRS3.1			CD517199	USP11	chrX	47106772	+	USP11	chrX	47104465	+
In-frame	ENST00000218348	ENST00000218348		ChiTaRS3.1			CD517199	USP11	chrX	47106772	+	USP11	chrX	47104465	+
intron-intron	ENST00000607334	ENST00000361756		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000607334	ENST00000533380		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000607334	ENST00000393713		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000607334	ENST00000490867		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000607334	ENST00000545854		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000607334	ENST00000530137		ChiTaRS3.1			DA646959	DLEU2	chr13	50693753	-	RNF121	chr11	71698009	+
intron-intron	ENST00000181796	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000378470	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000468747	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000378467	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000378465	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000378458	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000478076	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000378462	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000496330	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000479731	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000471815	ENST00000243913		ChiTaRS3.1			BQ375049	FAM107B	chr10	14641776	+	GCNT7	chr20	55099683	+
intron-intron	ENST00000379214	ENST00000366481		ChiTaRS3.1			H95089	LGR4	chr11	27388060	+	TRIM58	chr1	248043259	+
intron-intron	ENST00000389858	ENST00000366481		ChiTaRS3.1			H95089	LGR4	chr11	27388060	+	TRIM58	chr1	248043259	+
intron-intron	ENST00000480977	ENST00000366481		ChiTaRS3.1			H95089	LGR4	chr11	27388060	+	TRIM58	chr1	248043259	+
intron-3UTR	ENST00000452313	ENST00000442628		ChiTaRS3.1			AA514249	NPIPB7	chr16	28854237	+	NRBP2	chr8	144917117	+
intron-3UTR	ENST00000452313	ENST00000327830		ChiTaRS3.1			AA514249	NPIPB7	chr16	28854237	+	NRBP2	chr8	144917117	+
3UTR-3CDS	ENST00000545294	ENST00000372797		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000545294	ENST00000372802		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000545294	ENST00000372792		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000545294	ENST00000372798		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000545294	ENST00000340450		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000545294	ENST00000372805		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-intron	ENST00000545294	ENST00000479759		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000372797		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000372802		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000372792		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000372798		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000340450		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000538489	ENST00000372805		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-intron	ENST00000538489	ENST00000479759		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000372797		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000372802		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000372792		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000372798		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000340450		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000489294	ENST00000372805		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-intron	ENST00000489294	ENST00000479759		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000372797		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000372802		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000372792		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000372798		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000340450		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3CDS	ENST00000282169	ENST00000372805		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-intron	ENST00000282169	ENST00000479759		ChiTaRS3.1			CO404889	UHMK1	chr1	162492994	+	CAP1	chr1	40525823	+
3UTR-3UTR	ENST00000242249	ENST00000242249		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
3UTR-intron	ENST00000242249	ENST00000496212		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
3UTR-intron	ENST00000242249	ENST00000481345		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-3UTR	ENST00000496212	ENST00000242249		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-intron	ENST00000496212	ENST00000496212		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-intron	ENST00000496212	ENST00000481345		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-3UTR	ENST00000481345	ENST00000242249		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-intron	ENST00000481345	ENST00000496212		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-intron	ENST00000481345	ENST00000481345		ChiTaRS3.1			BE044279	RAMP3	chr7	45223278	-	RAMP3	chr7	45223615	-
intron-intron	ENST00000367268	ENST00000409709		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367268	ENST00000409893		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367268	ENST00000458637		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367268	ENST00000409619		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367268	ENST00000605744		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367267	ENST00000409709		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367267	ENST00000409893		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367267	ENST00000458637		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367267	ENST00000409619		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000367267	ENST00000605744		ChiTaRS3.1			AI150069	SYT2	chr1	202635050	+	MYO7A	chr11	76902090	-
intron-intron	ENST00000390168	ENST00000475381		ChiTaRS3.1			AI114579	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000273512		ChiTaRS3.1			AI114579	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000538775		ChiTaRS3.1			AI114579	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000543711		ChiTaRS3.1			AI114579	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266527	EWSR1	chr22	29685391	+	FLI1	chr11	128652206	+
5CDS-intron	ENST00000536183	ENST00000261778		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
5CDS-intron	ENST00000536183	ENST00000561931		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
5CDS-intron	ENST00000433091	ENST00000261778		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
5CDS-intron	ENST00000433091	ENST00000561931		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
5CDS-intron	ENST00000222572	ENST00000261778		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
5CDS-intron	ENST00000222572	ENST00000561931		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
intron-intron	ENST00000483292	ENST00000261778		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
intron-intron	ENST00000483292	ENST00000561931		ChiTaRS3.1			BC073739	PON2	chr7	95045551	-	TANGO6	chr16	69004033	-
intron-3UTR	ENST00000330909	ENST00000371222		ChiTaRS3.1			BE770729	MAGI1	chr3	65783486	-	JUN	chr1	59247697	+
intron-3UTR	ENST00000402939	ENST00000371222		ChiTaRS3.1			BE770729	MAGI1	chr3	65783486	-	JUN	chr1	59247697	+
intron-3UTR	ENST00000483466	ENST00000371222		ChiTaRS3.1			BE770729	MAGI1	chr3	65783486	-	JUN	chr1	59247697	+
intron-3UTR	ENST00000497477	ENST00000371222		ChiTaRS3.1			BE770729	MAGI1	chr3	65783486	-	JUN	chr1	59247697	+
intron-3UTR	ENST00000470990	ENST00000371222		ChiTaRS3.1			BE770729	MAGI1	chr3	65783486	-	JUN	chr1	59247697	+
3UTR-intron	ENST00000534336	ENST00000445937		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000531443		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000517566		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000452423		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000442977		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000521963		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000312046		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000449762		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000297447		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000521592		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
3UTR-intron	ENST00000534336	ENST00000497705		ChiTaRS3.1			DB218349	MALAT1	chr11	65270891	+	OXR1	chr8	107670085	+
5CDS-intron	ENST00000596304	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596304	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000430157	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000596273	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000442744	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595683	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000595158	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000598780	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599551	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000597451	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000596304		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000430157		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000596273		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000442744		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000595683		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000595158		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000598780		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000599551		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000597451		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
5CDS-intron	ENST00000599595	ENST00000599595		ChiTaRS3.1			BQ360139	UBA52	chr19	18684484	-	UBA52	chr1	27272090	+
intron-intron	ENST00000221419	ENST00000355294		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-intron	ENST00000221419	ENST00000367117		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-3UTR	ENST00000221419	ENST00000304534		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-3UTR	ENST00000221419	ENST00000491368		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-intron	ENST00000600873	ENST00000355294		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-intron	ENST00000600873	ENST00000367117		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-3UTR	ENST00000600873	ENST00000304534		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-3UTR	ENST00000600873	ENST00000491368		ChiTaRS3.1			BG284239	HNRNPL	chr19	39327352	-	RASSF5	chr1	206762489	+
intron-intron	ENST00000265239	ENST00000477999		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000265239	ENST00000244576		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000455191	ENST00000477999		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000455191	ENST00000244576		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000453254	ENST00000477999		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000453254	ENST00000244576		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000480302	ENST00000477999		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-intron	ENST00000480302	ENST00000244576		ChiTaRS3.1			DB330039	IQCG	chr3	197680924	-	ZNF391	chr6	27358697	-
intron-3UTR	ENST00000447404	ENST00000447404		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000447404	ENST00000348403		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000447404	ENST00000360998		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-intron	ENST00000447404	ENST00000530364		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000348403	ENST00000447404		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000348403	ENST00000348403		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000348403	ENST00000360998		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-intron	ENST00000348403	ENST00000530364		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000360998	ENST00000447404		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000360998	ENST00000348403		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000360998	ENST00000360998		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-intron	ENST00000360998	ENST00000530364		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000530364	ENST00000447404		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000530364	ENST00000348403		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-3UTR	ENST00000530364	ENST00000360998		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-intron	ENST00000530364	ENST00000530364		ChiTaRS3.1			BM479789	STRBP	chr9	125887400	+	STRBP	chr9	125887377	-
intron-intron	ENST00000556611	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000556611	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000556611	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000556611	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000556611	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000556611	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000539826	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000396582	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000432921	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000345122	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000556611		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000539826		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000396582		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000432921		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000345122		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
intron-intron	ENST00000433497	ENST00000433497		ChiTaRS3.1			AF150179	ARHGAP5	chr14	32571555	+	ARHGAP5	chr14	32569612	+
3UTR-3CDS	ENST00000317799	ENST00000216479		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000317799	ENST00000535854		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000317799	ENST00000555517		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000317799	ENST00000555457		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000405867	ENST00000216479		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000405867	ENST00000535854		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000405867	ENST00000555517		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000405867	ENST00000555457		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000537713	ENST00000216479		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000537713	ENST00000535854		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000537713	ENST00000555517		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000537713	ENST00000555457		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000545822	ENST00000216479		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000545822	ENST00000535854		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000545822	ENST00000555517		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000545822	ENST00000555457		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000494615	ENST00000216479		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-3CDS	ENST00000494615	ENST00000535854		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000494615	ENST00000555517		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
3UTR-intron	ENST00000494615	ENST00000555457		ChiTaRS3.1			AI004639	HADHB	chr2	26512870	-	AHSA1	chr14	77929074	-
intron-3CDS	ENST00000391976	ENST00000308527		ChiTaRS3.1			AW197079	HDLBP	chr2	242168749	+	SNX33	chr15	75949499	-
intron-3CDS	ENST00000310931	ENST00000308527		ChiTaRS3.1			AW197079	HDLBP	chr2	242168749	+	SNX33	chr15	75949499	-
intron-3CDS	ENST00000391975	ENST00000308527		ChiTaRS3.1			AW197079	HDLBP	chr2	242168749	+	SNX33	chr15	75949499	-
intron-3CDS	ENST00000427183	ENST00000308527		ChiTaRS3.1			AW197079	HDLBP	chr2	242168749	+	SNX33	chr15	75949499	-
intron-3CDS	ENST00000476807	ENST00000308527		ChiTaRS3.1			AW197079	HDLBP	chr2	242168749	+	SNX33	chr15	75949499	-
intron-intron	ENST00000541925	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000541925	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000541925	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000541925	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000542156	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000542156	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000542156	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000542156	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000370390	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000370390	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000370390	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000370390	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000451863	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000451863	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000451863	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000451863	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000544228	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000544228	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000544228	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000544228	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000445323	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000445323	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000445323	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000445323	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000538506	ENST00000358303		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000538506	ENST00000360708		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000538506	ENST00000311873		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-intron	ENST00000538506	ENST00000481503		ChiTaRS3.1			BF365539	MTMR1	chrX	149880963	-	ZC3HC1	chr7	129677752	-
intron-3CDS	ENST00000442101	ENST00000319622		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000442101	ENST00000565184		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000442101	ENST00000389093		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000442101	ENST00000335181		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000442101	ENST00000568883		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000442101	ENST00000449901		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000442101	ENST00000565154		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000442101	ENST00000568459		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000498824	ENST00000319622		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000498824	ENST00000565184		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000498824	ENST00000389093		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000498824	ENST00000335181		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000498824	ENST00000568883		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000498824	ENST00000449901		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000498824	ENST00000565154		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000498824	ENST00000568459		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000239882	ENST00000319622		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000239882	ENST00000565184		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000239882	ENST00000389093		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-3CDS	ENST00000239882	ENST00000335181		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000239882	ENST00000568883		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000239882	ENST00000449901		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000239882	ENST00000565154		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
intron-intron	ENST00000239882	ENST00000568459		ChiTaRS3.1			BF753099	ELF1	chr13	41507779	+	PKM	chr15	72502082	-
In-frame	ENST00000450793	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000450793	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000450793	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000450793	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000450793	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000450793	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000450793	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000450793	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000450793	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000450793	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000450793	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000450793	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000450793	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000538141	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000538141	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000538141	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000538141	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000538141	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000538141	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000538141	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000538141	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000380180	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000380180	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000380180	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000380180	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000380180	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000380180	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000380180	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000380180	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000318007	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000318007	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000318007	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000318007	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000318007	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000318007	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000318007	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000318007	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000437932	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000437932	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000437932	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000437932	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000437932	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000437932	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000437932	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000437932	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000317968	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000317968	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000317968	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000317968	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000317968	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000317968	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000317968	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000317968	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000542407	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000542407	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000542407	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000542407	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000542407	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000542407	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000542407	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000542407	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000508216	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000508216	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000508216	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000508216	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000508216	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000508216	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000508216	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000508216	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
In-frame	ENST00000514743	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000514743	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000514743	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-5UTR	ENST00000514743	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000514743	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000514743	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000514743	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
5CDS-intron	ENST00000514743	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-3CDS	ENST00000380176	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-5UTR	ENST00000380176	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-5UTR	ENST00000380176	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-5UTR	ENST00000380176	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-intron	ENST00000380176	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-intron	ENST00000380176	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-intron	ENST00000380176	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
3UTR-intron	ENST00000380176	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000359265	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000359265	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000359265	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000359265	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000359265	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000359265	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000359265	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000359265	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000512274	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000512274	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000512274	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000512274	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000512274	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000512274	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000512274	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000512274	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000450793		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000538141		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000380180		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000318007		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000437932		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-3CDS	ENST00000504489	ENST00000317968		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000504489	ENST00000542407		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000504489	ENST00000508216		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-5UTR	ENST00000504489	ENST00000514743		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000504489	ENST00000380176		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000504489	ENST00000359265		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000504489	ENST00000512274		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000504489	ENST00000504489		ChiTaRS3.1			BF820649	PDLIM5	chr4	95507595	+	PDLIM5	chr4	95494502	+
intron-intron	ENST00000488813	ENST00000341217		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000581407		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000582266		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000452648		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000582059		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000583953		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000577682		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000583522		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000488813	ENST00000581381		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000341217		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000581407		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000582266		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000452648		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000582059		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000583953		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000577682		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000583522		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395879	ENST00000581381		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000341217		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000581407		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000582266		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000452648		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000582059		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000583953		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000577682		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000583522		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000395880	ENST00000581381		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000341217		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000581407		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000582266		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000452648		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000582059		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000583953		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000577682		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000583522		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000310564	ENST00000581381		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000341217		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000581407		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000582266		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000452648		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000582059		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000583953		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000577682		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000583522		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000223336	ENST00000581381		ChiTaRS3.1			BE161179	COA1	chr7	43759482	+	FAM222B	chr17	27136112	-
intron-intron	ENST00000162391	ENST00000279550		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000162391	ENST00000228251		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000162391	ENST00000546164		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000279550		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000228251		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000428177	ENST00000546164		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000279550		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000228251		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-intron	ENST00000539192	ENST00000546164		ChiTaRS3.1			BF891429	FOXJ2	chr12	8198030	-	YBX3	chr12	10854877	-
intron-3CDS	ENST00000310325	ENST00000310325		ChiTaRS3.1			W23209	CTSF	chr11	66331457	+	CTSF	chr11	66335475	-
intron-intron	ENST00000310325	ENST00000533168		ChiTaRS3.1			W23209	CTSF	chr11	66331457	+	CTSF	chr11	66335475	-
intron-3CDS	ENST00000533168	ENST00000310325		ChiTaRS3.1			W23209	CTSF	chr11	66331457	+	CTSF	chr11	66335475	-
intron-intron	ENST00000533168	ENST00000533168		ChiTaRS3.1			W23209	CTSF	chr11	66331457	+	CTSF	chr11	66335475	-
intron-intron	ENST00000423620	ENST00000423620		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000423620	ENST00000433389		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000423620	ENST00000358397		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000423620	ENST00000454170		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000423620	ENST00000523347		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000433389	ENST00000423620		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000433389	ENST00000433389		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000433389	ENST00000358397		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000433389	ENST00000454170		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000433389	ENST00000523347		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000358397	ENST00000423620		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000358397	ENST00000433389		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000358397	ENST00000358397		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000358397	ENST00000454170		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000358397	ENST00000523347		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000454170	ENST00000423620		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000454170	ENST00000433389		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000454170	ENST00000358397		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000454170	ENST00000454170		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000454170	ENST00000523347		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000523347	ENST00000423620		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000523347	ENST00000433389		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000523347	ENST00000358397		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000523347	ENST00000454170		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000523347	ENST00000523347		ChiTaRS3.1			AW377449	ESRP1	chr8	95696355	-	ESRP1	chr8	95700942	-
intron-intron	ENST00000412460	ENST00000412460		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000412460	ENST00000262210		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000412460	ENST00000521168		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000262210	ENST00000412460		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000262210	ENST00000262210		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000262210	ENST00000521168		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000521168	ENST00000412460		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000521168	ENST00000262210		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-intron	ENST00000521168	ENST00000521168		ChiTaRS3.1			BU608669	CSPP1	chr8	68071224	-	CSPP1	chr8	68089957	-
intron-3CDS	ENST00000254190	ENST00000344771		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000254190	ENST00000395059		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000254190	ENST00000262518		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000543813	ENST00000344771		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000543813	ENST00000395059		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000543813	ENST00000262518		ChiTaRS3.1			BI035919	CHSY1	chr15	101742305	+	SRCAP	chr16	30748719	-
intron-3CDS	ENST00000326639	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000264584	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000441387	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000354456	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000506199	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000512292	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000394288	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000432347	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-3CDS	ENST00000427266	ENST00000313368		ChiTaRS3.1			BE185469	LARP1B	chr4	129087525	-	TAF7	chr5	140699233	-
intron-intron	ENST00000368704	ENST00000329654		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368704	ENST00000371049		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368704	ENST00000423207		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368704	ENST00000371048		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368704	ENST00000371045		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368704	ENST00000480109		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000329654		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000371049		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000423207		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000371048		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000371045		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368706	ENST00000480109		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000329654		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000371049		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000423207		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000371048		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000371045		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368703	ENST00000480109		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000329654		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000371049		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000423207		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000371048		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000371045		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000368705	ENST00000480109		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000329654		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000371049		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000423207		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000371048		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000371045		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000474991	ENST00000480109		ChiTaRS3.1			BF359219	S100A16	chr1	153579953	-	PDE4B	chr1	66836309	+
intron-intron	ENST00000261192	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000261192	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000261192	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000261192	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000261192	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000261192	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000538118	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000342945	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539282	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000539780	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000426342		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000399232		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000399222		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000357362		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000439988		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000544418	ENST00000472499		ChiTaRS3.1			AL120469	BCAT1	chr12	24966386	+	MDGA2	chr14	47647579	+
intron-intron	ENST00000414744	ENST00000414744		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000414744	ENST00000556050		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000414744	ENST00000554154		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000414744	ENST00000424210		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000556050	ENST00000414744		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000556050	ENST00000556050		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000556050	ENST00000554154		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000556050	ENST00000424210		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000554154	ENST00000414744		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000554154	ENST00000556050		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000554154	ENST00000554154		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000554154	ENST00000424210		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000424210	ENST00000414744		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000424210	ENST00000556050		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000424210	ENST00000554154		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000424210	ENST00000424210		ChiTaRS3.1			BG252029	SPAG5-AS1	chr17	26943135	+	SPAG5-AS1	chr17	26942801	-
intron-intron	ENST00000193391	ENST00000193391		ChiTaRS3.1			AI739559	IMPG2	chr3	101023162	+	IMPG2	chr3	100972540	+
intron-3UTR	ENST00000609205	ENST00000258418		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
intron-intron	ENST00000609205	ENST00000410084		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
intron-intron	ENST00000609205	ENST00000409788		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
intron-intron	ENST00000609205	ENST00000484398		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
3UTR-3UTR	ENST00000360270	ENST00000258418		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
3UTR-intron	ENST00000360270	ENST00000410084		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
3UTR-intron	ENST00000360270	ENST00000409788		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
3UTR-intron	ENST00000360270	ENST00000484398		ChiTaRS3.1			AA234749	MSN	chrX	64960867	-	CAB39	chr2	231685610	-
intron-intron	ENST00000486765	ENST00000358506		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000486765	ENST00000296122		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000486765	ENST00000395366		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000361605	ENST00000358506		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000361605	ENST00000296122		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000361605	ENST00000395366		ChiTaRS3.1			AI627549	C1orf174	chr1	3806014	+	PPP1CB	chr2	29012097	-
intron-intron	ENST00000534062	ENST00000537532		ChiTaRS3.1			BF697079	RTL1	chr14	101348004	-	ZNF664	chr12	124498844	+
intron-3UTR	ENST00000534062	ENST00000539644		ChiTaRS3.1			BF697079	RTL1	chr14	101348004	-	ZNF664	chr12	124498844	+
intron-3UTR	ENST00000534062	ENST00000392404		ChiTaRS3.1			BF697079	RTL1	chr14	101348004	-	ZNF664	chr12	124498844	+
intron-3UTR	ENST00000534062	ENST00000538932		ChiTaRS3.1			BF697079	RTL1	chr14	101348004	-	ZNF664	chr12	124498844	+
intron-3UTR	ENST00000534062	ENST00000337815		ChiTaRS3.1			BF697079	RTL1	chr14	101348004	-	ZNF664	chr12	124498844	+
Frame-shit	ENST00000316403	ENST00000316403		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000316403	ENST00000546343		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000316403	ENST00000560366		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000316403	ENST00000405140		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000316403	ENST00000523500		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000546343	ENST00000316403		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000546343	ENST00000546343		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000546343	ENST00000560366		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000546343	ENST00000405140		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000546343	ENST00000523500		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000560366	ENST00000316403		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000560366	ENST00000546343		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000560366	ENST00000560366		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000560366	ENST00000405140		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000560366	ENST00000523500		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000405140	ENST00000316403		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000405140	ENST00000546343		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000405140	ENST00000560366		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000405140	ENST00000405140		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
Frame-shit	ENST00000405140	ENST00000523500		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000523500	ENST00000316403		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000523500	ENST00000546343		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000523500	ENST00000560366		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000523500	ENST00000405140		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
In-frame	ENST00000523500	ENST00000523500		ChiTaRS3.1			BI016129	CLU	chr8	27466459	-	CLU	chr8	27462611	+
intron-intron	ENST00000266269	ENST00000306052		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000266269	ENST00000371454		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000266269	ENST00000465675		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000266269	ENST00000354412		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000266269	ENST00000347547		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000266269	ENST00000460214		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000306052		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000371454		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000465675		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000354412		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000347547		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000405309	ENST00000460214		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000306052		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000371454		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000465675		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000354412		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000347547		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000351933	ENST00000460214		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000306052		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000371454		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000465675		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000354412		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000347547		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000215919	ENST00000460214		ChiTaRS3.1			BQ333149	PATZ1	chr22	31737529	+	LRP8	chr1	53709208	+
intron-intron	ENST00000371464	ENST00000359019		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371464	ENST00000334822		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371464	ENST00000426126		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371464	ENST00000550789		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371467	ENST00000359019		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371467	ENST00000334822		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371467	ENST00000426126		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371467	ENST00000550789		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371469	ENST00000359019		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371469	ENST00000334822		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371469	ENST00000426126		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000371469	ENST00000550789		ChiTaRS3.1			AI444579	RBP4	chr10	95360488	+	ZDHHC17	chr12	77230681	+
intron-intron	ENST00000457823	ENST00000457823		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000457823	ENST00000354268		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000457823	ENST00000509418		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000354268	ENST00000457823		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000354268	ENST00000354268		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000354268	ENST00000509418		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000509418	ENST00000457823		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000509418	ENST00000354268		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
intron-intron	ENST00000509418	ENST00000509418		ChiTaRS3.1			AA828699	SMARCAD1	chr4	95183952	+	SMARCAD1	chr4	95184036	-
Frame-shit	ENST00000296755	ENST00000296755		ChiTaRS3.1			BE855959	MAP1B	chr5	71491085	-	MAP1B	chr5	71492504	-
5CDS-intron	ENST00000296755	ENST00000504183		ChiTaRS3.1			BE855959	MAP1B	chr5	71491085	-	MAP1B	chr5	71492504	-
intron-3CDS	ENST00000504183	ENST00000296755		ChiTaRS3.1			BE855959	MAP1B	chr5	71491085	-	MAP1B	chr5	71492504	-
intron-intron	ENST00000504183	ENST00000504183		ChiTaRS3.1			BE855959	MAP1B	chr5	71491085	-	MAP1B	chr5	71492504	-
intron-intron	ENST00000580974	ENST00000334512		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000580974	ENST00000478357		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000580974	ENST00000446377		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000299954	ENST00000334512		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000299954	ENST00000478357		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000299954	ENST00000446377		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000335257	ENST00000334512		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000335257	ENST00000478357		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000335257	ENST00000446377		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000581322	ENST00000334512		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000581322	ENST00000478357		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000581322	ENST00000446377		ChiTaRS3.1			CV361339	PITPNC1	chr17	65423749	-	ZMIZ1	chr10	80856962	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835119	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-3UTR	ENST00000231948	ENST00000394752		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000231948	ENST00000394750		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000231948	ENST00000358080		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000231948	ENST00000296295		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000231948	ENST00000470575		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-3UTR	ENST00000432408	ENST00000394752		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000432408	ENST00000394750		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000432408	ENST00000358080		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000432408	ENST00000296295		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
intron-intron	ENST00000432408	ENST00000470575		ChiTaRS3.1			BQ306819	CRBN	chr3	3195131	-	SFMBT1	chr3	52938288	+
5CDS-intron	ENST00000442235	ENST00000439951		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000442235	ENST00000313733		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000442235	ENST00000358053		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000442235	ENST00000471817		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-intron	ENST00000410003	ENST00000439951		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000410003	ENST00000313733		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000410003	ENST00000358053		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000410003	ENST00000471817		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-intron	ENST00000233623	ENST00000439951		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000233623	ENST00000313733		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000233623	ENST00000358053		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
5CDS-3UTR	ENST00000233623	ENST00000471817		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
3UTR-intron	ENST00000463189	ENST00000439951		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
3UTR-3UTR	ENST00000463189	ENST00000313733		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
3UTR-3UTR	ENST00000463189	ENST00000358053		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
3UTR-3UTR	ENST00000463189	ENST00000471817		ChiTaRS3.1			BE816019	TTC31	chr2	74717820	+	OSBPL2	chr20	60870674	+
intron-3CDS	ENST00000304992	ENST00000290429		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-3UTR	ENST00000304992	ENST00000327555		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-intron	ENST00000304992	ENST00000464244		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-3CDS	ENST00000572621	ENST00000290429		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-3UTR	ENST00000572621	ENST00000327555		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-intron	ENST00000572621	ENST00000464244		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-3CDS	ENST00000575116	ENST00000290429		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-3UTR	ENST00000575116	ENST00000327555		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
intron-intron	ENST00000575116	ENST00000464244		ChiTaRS3.1			BG998719	PRPF8	chr17	1565000	+	MCAT	chr22	43529406	+
3UTR-3UTR	ENST00000257215	ENST00000257215		ChiTaRS3.1			CB409589	DAGLA	chr11	61513226	-	DAGLA	chr11	61514292	+
Frame-shit	ENST00000305877	ENST00000258874		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
5CDS-5UTR	ENST00000305877	ENST00000559722		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
Frame-shit	ENST00000359540	ENST00000258874		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
5CDS-5UTR	ENST00000359540	ENST00000559722		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
Frame-shit	ENST00000398512	ENST00000258874		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
5CDS-5UTR	ENST00000398512	ENST00000559722		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
intron-3CDS	ENST00000436990	ENST00000258874		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
intron-5UTR	ENST00000436990	ENST00000559722		ChiTaRS3.1			BF947729	BCR	chr22	23524010	-	MTHFS	chr15	80181535	+
intron-3CDS	ENST00000354577	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000354577	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000354577	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000354577	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000354577	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000354577	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000354577	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000354577	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000354577	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000354577	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000403834	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000403834	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000403834	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000403834	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000403834	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000403834	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000403834	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000403834	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000403834	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000403834	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368068	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368068	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368068	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368068	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368068	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368068	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368068	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368068	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368068	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368068	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000479213	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000479213	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000479213	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000479213	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000479213	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000479213	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000479213	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000479213	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000479213	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000479213	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368060	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368060	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368060	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368060	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368060	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368060	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368060	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368060	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368060	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368060	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368058	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368058	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368058	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368058	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368058	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368058	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368058	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368058	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368058	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368058	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000545957	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000545957	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000545957	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000545957	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000545957	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000545957	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000545957	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000545957	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000545957	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000545957	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368053	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368053	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000368053	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368053	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368053	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368053	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000368053	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368053	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368053	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000368053	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000540546	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000540546	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000540546	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000540546	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000540546	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000540546	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000540546	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000540546	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000540546	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000540546	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000539158	ENST00000354577		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000539158	ENST00000403834		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-3CDS	ENST00000539158	ENST00000368068		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000539158	ENST00000479213		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000539158	ENST00000368060		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000539158	ENST00000368058		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-5UTR	ENST00000539158	ENST00000545957		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000539158	ENST00000368053		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000539158	ENST00000540546		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000539158	ENST00000539158		ChiTaRS3.1			BQ223279	MED23	chr6	131910657	+	MED23	chr6	131908986	-
intron-intron	ENST00000409598	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409598	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000424281	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000304527	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000455740	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000409252	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000514152	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000427414	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000376462		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000481700		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000458595		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000376454		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000376452		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000430453		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000307544		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000396446		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000396445		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-intron	ENST00000604030	ENST00000376451		ChiTaRS3.1			AW813939	SH3D19	chr4	152042211	-	KIAA1217	chr10	24553139	+
intron-3CDS	ENST00000392415	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000392415	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000392415	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000392415	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000392415	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000392415	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000410062	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000410062	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000410062	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000410062	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000410062	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000410062	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000602710	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602710	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602710	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602710	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602710	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000602710	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000602837	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602837	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602837	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602837	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602837	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000602837	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000602959	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602959	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602959	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602959	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602959	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000602959	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000602475	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602475	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602475	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602475	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602475	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000602475	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-3CDS	ENST00000602632	ENST00000338854		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602632	ENST00000395757		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602632	ENST00000355815		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602632	ENST00000261646		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-5UTR	ENST00000602632	ENST00000435530		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
intron-intron	ENST00000602632	ENST00000583732		ChiTaRS3.1			DA092279	UBE2E3	chr2	181881928	+	SREBF1	chr17	17723029	-
3UTR-intron	ENST00000307098	ENST00000535334		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000303097		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000394222		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000539730		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000471138		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000486562		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000535334		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000303097		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000394222		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000539730		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000471138		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000486562		ChiTaRS3.1			BE181429	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-3UTR	ENST00000265965	ENST00000300086		ChiTaRS3.1			BQ340299	SERGEF	chr11	17931609	+	TERF2IP	chr16	75690648	-
intron-3UTR	ENST00000528200	ENST00000300086		ChiTaRS3.1			BQ340299	SERGEF	chr11	17931609	+	TERF2IP	chr16	75690648	-
intron-3UTR	ENST00000532265	ENST00000300086		ChiTaRS3.1			BQ340299	SERGEF	chr11	17931609	+	TERF2IP	chr16	75690648	-
intron-3UTR	ENST00000532212	ENST00000300086		ChiTaRS3.1			BQ340299	SERGEF	chr11	17931609	+	TERF2IP	chr16	75690648	-
intron-intron	ENST00000396353	ENST00000396353		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000396355		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000396354		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000342673		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-intron	ENST00000396353	ENST00000571896		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396353		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396355		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000396354		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000342673		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396355	ENST00000571896		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396353		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396355		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000396354		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000342673		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000396354	ENST00000571896		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396353		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396355		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000396354		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000342673		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000342673	ENST00000571896		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396353		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396355		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000396354		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000342673		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
3UTR-intron	ENST00000571896	ENST00000571896		ChiTaRS3.1			AI700249	NDE1	chr16	15818594	+	NDE1	chr16	15814858	+
intron-5UTR	ENST00000233813	ENST00000327791		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000442791		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000534854		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000380790		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000380788		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000541702		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
intron-5UTR	ENST00000233813	ENST00000555248		ChiTaRS3.1			U72209	IGFBP5	chr2	217537414	+	YAF2	chr12	42631997	-
5UTR-intron	ENST00000319622	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000319622	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000319622	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000319622	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000319622	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-intron	ENST00000565184	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565184	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565184	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565184	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565184	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000389093	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000389093	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000389093	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000389093	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000389093	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000335181	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000335181	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000335181	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000335181	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000335181	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000568883	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568883	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568883	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568883	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568883	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000449901	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000449901	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000449901	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000449901	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000449901	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-intron	ENST00000565154	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565154	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565154	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565154	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
5UTR-5UTR	ENST00000565154	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000568459	ENST00000503191		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568459	ENST00000382020		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568459	ENST00000506802		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568459	ENST00000509380		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-5UTR	ENST00000568459	ENST00000503731		ChiTaRS3.1			BF204709	PKM	chr15	72523241	+	TUSC3	chr8	15397794	+
intron-intron	ENST00000215832	ENST00000215832		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-5UTR	ENST00000215832	ENST00000398822		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000215832	ENST00000544786		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000215832	ENST00000491588		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000398822	ENST00000215832		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-5UTR	ENST00000398822	ENST00000398822		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000398822	ENST00000544786		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000398822	ENST00000491588		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000544786	ENST00000215832		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-5UTR	ENST00000544786	ENST00000398822		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000544786	ENST00000544786		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000544786	ENST00000491588		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000491588	ENST00000215832		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-5UTR	ENST00000491588	ENST00000398822		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000491588	ENST00000544786		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000491588	ENST00000491588		ChiTaRS3.1			M84489	MAPK1	chr22	22160169	+	MAPK1	chr22	22221929	-
intron-intron	ENST00000340353	ENST00000340353		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000340353	ENST00000532959		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000340353	ENST00000305494		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000340353	ENST00000535167		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000340353	ENST00000355734		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000532959	ENST00000340353		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000532959	ENST00000532959		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000532959	ENST00000305494		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000532959	ENST00000535167		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000532959	ENST00000355734		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000305494	ENST00000340353		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000305494	ENST00000532959		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000305494	ENST00000305494		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000305494	ENST00000535167		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000305494	ENST00000355734		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000535167	ENST00000340353		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000535167	ENST00000532959		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000535167	ENST00000305494		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000535167	ENST00000535167		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000535167	ENST00000355734		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000355734	ENST00000340353		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000355734	ENST00000532959		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000355734	ENST00000305494		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000355734	ENST00000535167		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000355734	ENST00000355734		ChiTaRS3.1			BF327439	TMEM135	chr11	86859714	-	TMEM135	chr11	86859701	+
intron-intron	ENST00000452853	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000452853	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000452853	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000239940	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000239940	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000239940	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000423691	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000423691	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000423691	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481767	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481767	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481767	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000494827	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000494827	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000494827	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000490975	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000490975	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000490975	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000497148	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000497148	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000497148	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000475518	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000475518	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000475518	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481275	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481275	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000481275	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000498307	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000498307	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000498307	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000489155	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000489155	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000489155	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461930	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461930	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461930	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461868	ENST00000336648		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461868	ENST00000399120		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
intron-intron	ENST00000461868	ENST00000482273		ChiTaRS3.1			BF366959	PFN2	chr3	149685233	+	HLCS	chr21	38268133	+
In-frame	ENST00000265686	ENST00000395573		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000265686	ENST00000216416		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000265686	ENST00000553660		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000265686	ENST00000557690		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000265686	ENST00000556113		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000532635	ENST00000395573		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000532635	ENST00000216416		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000532635	ENST00000553660		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000532635	ENST00000557690		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
In-frame	ENST00000532635	ENST00000556113		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
intron-3CDS	ENST00000530802	ENST00000395573		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
intron-3CDS	ENST00000530802	ENST00000216416		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
intron-3CDS	ENST00000530802	ENST00000553660		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
intron-3CDS	ENST00000530802	ENST00000557690		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
intron-3CDS	ENST00000530802	ENST00000556113		ChiTaRS3.1			AF031379	TCIRG1	chr11	67815021	-	CNIH1	chr14	54908031	-
Frame-shit	ENST00000431264	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000431264	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000431264	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000431264	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000431264	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000431264	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000424526	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000424526	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000424526	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000424526	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000424526	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000424526	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000400483	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000400483	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000400483	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000400483	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000400483	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000400483	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000269218	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000269218	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000269218	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000269218	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000269218	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000269218	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000580732	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
Frame-shit	ENST00000580732	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000580732	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000580732	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000580732	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
5CDS-intron	ENST00000580732	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-3CDS	ENST00000578368	ENST00000409419		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-3CDS	ENST00000578368	ENST00000409587		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-intron	ENST00000578368	ENST00000594085		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-intron	ENST00000578368	ENST00000409735		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-intron	ENST00000578368	ENST00000356508		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-intron	ENST00000578368	ENST00000409281		ChiTaRS3.1			BE938399	GREB1L	chr18	18983889	-	PLD3	chr19	40882572	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AA777969	MALAT1	chr11	65266812	-	MALAT1	chr11	65269794	-
intron-3CDS	ENST00000336838	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000336838	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000336838	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000336838	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000263630	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000263630	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000263630	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000436346	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000436346	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000436346	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000413716	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000413716	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000413716	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000422883	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000422883	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000422883	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000336838		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000263630		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000436346		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-3CDS	ENST00000471947	ENST00000413716		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000471947	ENST00000422883		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-intron	ENST00000471947	ENST00000471947		ChiTaRS3.1			AW976179	CCDC88A	chr2	55562085	+	CCDC88A	chr2	55571578	-
intron-5UTR	ENST00000296674	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000296674	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000296674	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000510210	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000510210	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000510210	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000512493	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000512493	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000512493	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000510019	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000510019	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000510019	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000507980	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000507980	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000507980	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000503605	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000503605	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000503605	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000511844	ENST00000206423		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-intron	ENST00000511844	ENST00000439685		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
intron-5UTR	ENST00000511844	ENST00000475181		ChiTaRS3.1			CA429429	RPS23	chr5	81571951	+	CCDC80	chr3	112359590	-
5CDS-3UTR	ENST00000371084	ENST00000371084		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000371084	ENST00000540265		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000371084	ENST00000371083		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-intron	ENST00000371084	ENST00000483707		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000540265	ENST00000371084		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000540265	ENST00000540265		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000540265	ENST00000371083		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-intron	ENST00000540265	ENST00000483707		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000371083	ENST00000371084		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000371083	ENST00000540265		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-3UTR	ENST00000371083	ENST00000371083		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
5CDS-intron	ENST00000371083	ENST00000483707		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
intron-3UTR	ENST00000483707	ENST00000371084		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
intron-3UTR	ENST00000483707	ENST00000540265		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
intron-3UTR	ENST00000483707	ENST00000371083		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
intron-intron	ENST00000483707	ENST00000483707		ChiTaRS3.1			AI798979	PGM1	chr1	64125276	-	PGM1	chr1	64125419	+
intron-intron	ENST00000341056	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000341056	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396045	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000310758	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000396040	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000442504	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000448602	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000341056		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000396045		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000310758		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000396040		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000442504		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000448602		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-intron	ENST00000479447	ENST00000479447		ChiTaRS3.1			DA840149	ELMO1	chr7	37258925	+	ELMO1	chr7	37256302	-
intron-3CDS	ENST00000369239	ENST00000369239		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-3CDS	ENST00000369239	ENST00000438806		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-intron	ENST00000369239	ENST00000466057		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-3CDS	ENST00000438806	ENST00000369239		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-3CDS	ENST00000438806	ENST00000438806		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-intron	ENST00000438806	ENST00000466057		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-3CDS	ENST00000466057	ENST00000369239		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-3CDS	ENST00000466057	ENST00000438806		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
intron-intron	ENST00000466057	ENST00000466057		ChiTaRS3.1			BG223429	PNISR	chr6	99856065	-	PNISR	chr6	99857146	+
3UTR-3UTR	ENST00000290341	ENST00000290341		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
3UTR-intron	ENST00000290341	ENST00000431824		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
3UTR-intron	ENST00000290341	ENST00000515586		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-3UTR	ENST00000431824	ENST00000290341		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-intron	ENST00000431824	ENST00000431824		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-intron	ENST00000431824	ENST00000515586		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-3UTR	ENST00000515586	ENST00000290341		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-intron	ENST00000515586	ENST00000431824		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-intron	ENST00000515586	ENST00000515586		ChiTaRS3.1			CN430059	IGF2BP1	chr17	47132731	-	IGF2BP1	chr17	47132793	+
intron-intron	ENST00000395952	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000395952	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000395952	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000395952	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000375842	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000375842	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000375842	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000375842	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000440843	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000440843	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000440843	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000440843	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000471644	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000471644	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000471644	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000471644	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000538874	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000538874	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000538874	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000538874	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550556	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550556	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550556	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550556	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547161	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547161	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547161	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547161	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000464268	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000464268	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000464268	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000464268	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000444818	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000444818	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000444818	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000444818	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000551038	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000551038	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000551038	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000551038	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549543	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549543	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549543	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549543	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000494438	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000494438	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000494438	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000494438	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000413853	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000413853	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000413853	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000413853	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549853	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549853	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549853	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549853	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547325	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547325	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547325	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000547325	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000488103	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000488103	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000488103	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000488103	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000457366	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000457366	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000457366	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000457366	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000548592	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000548592	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000548592	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000548592	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000482058	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000482058	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000482058	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000482058	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000446529	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000446529	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000446529	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000446529	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000552042	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000552042	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000552042	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000552042	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000546528	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000546528	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000546528	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000546528	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000475067	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000475067	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000475067	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000475067	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000429735	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000429735	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000429735	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000429735	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549722	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549722	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549722	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000549722	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550719	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550719	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550719	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000550719	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000495335	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000495335	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000495335	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000495335	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000432617	ENST00000356924		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000432617	ENST00000298816		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000432617	ENST00000557554		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
intron-intron	ENST00000432617	ENST00000557588		ChiTaRS3.1			BF057519	ABHD16A	chr6	2985673	+	ABCD4	chr14	74761823	+
3UTR-3UTR	ENST00000282296	ENST00000282296		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-3UTR	ENST00000282296	ENST00000356715		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-intron	ENST00000282296	ENST00000599402		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-intron	ENST00000282296	ENST00000596085		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-3UTR	ENST00000356715	ENST00000282296		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-3UTR	ENST00000356715	ENST00000356715		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-intron	ENST00000356715	ENST00000599402		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
3UTR-intron	ENST00000356715	ENST00000596085		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-3UTR	ENST00000599402	ENST00000282296		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-3UTR	ENST00000599402	ENST00000356715		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-intron	ENST00000599402	ENST00000599402		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-intron	ENST00000599402	ENST00000596085		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-3UTR	ENST00000596085	ENST00000282296		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-3UTR	ENST00000596085	ENST00000356715		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-intron	ENST00000596085	ENST00000599402		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
intron-intron	ENST00000596085	ENST00000596085		ChiTaRS3.1			CF135679	ZNF551	chr19	58200739	-	ZNF551	chr19	58199827	+
Frame-shit	ENST00000368759	ENST00000368759		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000368759	ENST00000278100		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000368759	ENST00000429863		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000368759	ENST00000299130		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
5CDS-3UTR	ENST00000368759	ENST00000478798		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000278100	ENST00000368759		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000278100	ENST00000278100		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000278100	ENST00000429863		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000278100	ENST00000299130		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
5CDS-3UTR	ENST00000278100	ENST00000478798		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000429863	ENST00000368759		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000429863	ENST00000278100		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000429863	ENST00000429863		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000429863	ENST00000299130		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
5CDS-3UTR	ENST00000429863	ENST00000478798		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000299130	ENST00000368759		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000299130	ENST00000278100		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000299130	ENST00000429863		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
Frame-shit	ENST00000299130	ENST00000299130		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
5CDS-3UTR	ENST00000299130	ENST00000478798		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-3CDS	ENST00000478798	ENST00000368759		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-3CDS	ENST00000478798	ENST00000278100		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-3CDS	ENST00000478798	ENST00000429863		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-3CDS	ENST00000478798	ENST00000299130		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-3UTR	ENST00000478798	ENST00000478798		ChiTaRS3.1			AA226439	BCCIP	chr10	127520148	+	BCCIP	chr10	127520037	-
intron-intron	ENST00000317483	ENST00000317483		ChiTaRS3.1			BE835379	RAB23	chr6	57075244	+	RAB23	chr6	57058640	+
intron-intron	ENST00000317483	ENST00000468148		ChiTaRS3.1			BE835379	RAB23	chr6	57075244	+	RAB23	chr6	57058640	+
intron-intron	ENST00000468148	ENST00000317483		ChiTaRS3.1			BE835379	RAB23	chr6	57075244	+	RAB23	chr6	57058640	+
intron-intron	ENST00000468148	ENST00000468148		ChiTaRS3.1			BE835379	RAB23	chr6	57075244	+	RAB23	chr6	57058640	+
intron-intron	ENST00000378062	ENST00000513706		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000509442		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000513807		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000355943		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000447245		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000504098		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000378062	ENST00000509432		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000513706		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000509442		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000513807		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000355943		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000447245		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000504098		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-intron	ENST00000470584	ENST00000509432		ChiTaRS3.1			BI601719	NDP	chrX	43809181	-	SLC25A46	chr5	110075056	+
intron-3CDS	ENST00000376509	ENST00000356493		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
intron-3CDS	ENST00000376509	ENST00000452248		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
intron-intron	ENST00000376509	ENST00000487490		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
intron-3CDS	ENST00000485431	ENST00000356493		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
intron-3CDS	ENST00000485431	ENST00000452248		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
intron-intron	ENST00000485431	ENST00000487490		ChiTaRS3.1			BM693019	PIM2	chrX	48770524	+	STOML2	chr9	35101012	-
3UTR-intron	ENST00000405271	ENST00000487273		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000405271	ENST00000466936		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000405271	ENST00000481513		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000405271	ENST00000484143		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000263735	ENST00000487273		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000263735	ENST00000466936		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000263735	ENST00000481513		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
3UTR-intron	ENST00000263735	ENST00000484143		ChiTaRS3.1			BF826309	EPCAM	chr2	47614014	+	ADAM9	chr8	38858368	+
intron-3UTR	ENST00000439374	ENST00000368926		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-intron	ENST00000439374	ENST00000465135		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-3UTR	ENST00000540998	ENST00000368926		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-intron	ENST00000540998	ENST00000465135		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-3UTR	ENST00000357235	ENST00000368926		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-intron	ENST00000357235	ENST00000465135		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-3UTR	ENST00000492796	ENST00000368926		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-intron	ENST00000492796	ENST00000465135		ChiTaRS3.1			BU564669	CDC42SE1	chr1	151023917	-	C1orf56	chr1	151023696	+
intron-intron	ENST00000511725	ENST00000511725		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-5UTR	ENST00000511725	ENST00000253815		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-5UTR	ENST00000511725	ENST00000398733		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-intron	ENST00000511725	ENST00000505548		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-intron	ENST00000253815	ENST00000511725		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-5UTR	ENST00000253815	ENST00000253815		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-5UTR	ENST00000253815	ENST00000398733		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-intron	ENST00000253815	ENST00000505548		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-intron	ENST00000398733	ENST00000511725		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-5UTR	ENST00000398733	ENST00000253815		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-5UTR	ENST00000398733	ENST00000398733		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
intron-intron	ENST00000398733	ENST00000505548		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-intron	ENST00000505548	ENST00000511725		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-5UTR	ENST00000505548	ENST00000253815		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-5UTR	ENST00000505548	ENST00000398733		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
5UTR-intron	ENST00000505548	ENST00000505548		ChiTaRS3.1			BQ186099	UBE2D2	chr5	138941937	-	UBE2D2	chr5	138941352	+
In-frame	ENST00000279036	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000279036	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000279036	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279036	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279036	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279036	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279036	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000279035	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000279035	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000279035	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279035	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279035	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279035	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000279035	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000372689	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000372689	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000372689	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000372689	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000372689	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000372689	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000372689	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000545755	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000545755	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000545755	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000545755	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000545755	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000545755	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000545755	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000535404	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000535404	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-3CDS	ENST00000535404	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000535404	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000535404	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000535404	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5UTR-intron	ENST00000535404	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000341555	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000341555	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000341555	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000341555	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000341555	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000341555	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000341555	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000543458	ENST00000279036		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000543458	ENST00000279035		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
In-frame	ENST00000543458	ENST00000372689		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000543458	ENST00000545755		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000543458	ENST00000535404		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000543458	ENST00000341555		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
5CDS-intron	ENST00000543458	ENST00000543458		ChiTaRS3.1			BE074269	PIGT	chr20	44044938	-	PIGT	chr20	44048005	+
intron-intron	ENST00000369093	ENST00000527132		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000396505		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000326932		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000525493		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000450094		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000527132		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000396505		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000326932		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000525493		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000450094		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000527132		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000396505		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000326932		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000525493		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000450094		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000527132		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000396505		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000326932		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000525493		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000450094		ChiTaRS3.1			AI394169	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000220592	ENST00000336787		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-3UTR	ENST00000220592	ENST00000396307		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000220592	ENST00000564609		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000220592	ENST00000569493		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000220592	ENST00000561545		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000519980	ENST00000336787		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-3UTR	ENST00000519980	ENST00000396307		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000519980	ENST00000564609		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000519980	ENST00000569493		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000519980	ENST00000561545		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000517293	ENST00000336787		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-3UTR	ENST00000517293	ENST00000396307		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000517293	ENST00000564609		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000517293	ENST00000569493		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000517293	ENST00000561545		ChiTaRS3.1			BC078139	AGO2	chr8	141609842	+	RAB27A	chr15	55495683	-
intron-intron	ENST00000263346	ENST00000263346		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000263346	ENST00000563406		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000263346	ENST00000263347		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000563406	ENST00000263346		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000563406	ENST00000563406		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000563406	ENST00000263347		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000263347	ENST00000263346		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000263347	ENST00000563406		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000263347	ENST00000263347		ChiTaRS3.1			BF882939	TCF25	chr16	89973265	+	TCF25	chr16	89973769	-
intron-intron	ENST00000301785	ENST00000311573		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368340		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000347088		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000361831		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000355499		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000404643		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000407221		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000359205		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000295566		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368330		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368339		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000535662		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000405763		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000438245		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000476093		ChiTaRS3.1			AW249049	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000512438	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000610009	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000502693	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000499430	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000507244	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000514763	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-5UTR	ENST00000608184	ENST00000359286		ChiTaRS3.1			AK131339	STX18-AS1	chr4	4613572	+	ZNF705A	chr12	8325150	+
intron-intron	ENST00000563679	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000563679	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000325823	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000447912	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000535621	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000455313	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000396410	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000569715	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000563679		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000325823		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000447912		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000535621		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000455313		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000396410		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000569715		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-intron	ENST00000450288	ENST00000450288		ChiTaRS3.1			BE161549	PDXDC1	chr16	15141350	+	PDXDC1	chr16	15132003	+
intron-3CDS	ENST00000540367	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000540367	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000540367	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000540367	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000376618	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000376618	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000376618	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000376618	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000265641	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000265641	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000265641	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000265641	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000539743	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000539743	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000539743	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000539743	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000537756	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000537756	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000537756	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000537756	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000538994	ENST00000404648		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000538994	ENST00000405164		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000538994	ENST00000336098		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000538994	ENST00000407946		ChiTaRS3.1			CB154699	CPT1A	chr11	68523409	+	FGG	chr4	155526135	-
intron-3CDS	ENST00000399537	ENST00000399537		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000399537	ENST00000430969		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-intron	ENST00000399537	ENST00000399434		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000430969	ENST00000399537		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000430969	ENST00000430969		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-intron	ENST00000430969	ENST00000399434		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000399434	ENST00000399537		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000399434	ENST00000430969		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-intron	ENST00000399434	ENST00000399434		ChiTaRS3.1			CD656499	TNRC18	chr7	5352164	-	TNRC18	chr7	5396755	-
intron-3CDS	ENST00000264122	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000264122	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000264122	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000264122	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000264122	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000264122	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000407712	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000407712	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000407712	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000407712	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000407712	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000407712	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000394027	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000394027	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000394027	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000394027	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000394027	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000394027	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000403724	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000403724	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000403724	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000403724	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000403724	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000403724	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000405772	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000405772	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000405772	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000405772	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000405772	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000405772	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000545639	ENST00000264122		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000545639	ENST00000407712		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-3CDS	ENST00000545639	ENST00000394027		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000545639	ENST00000403724		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000545639	ENST00000405772		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000545639	ENST00000545639		ChiTaRS3.1			BE827549	CBLB	chr3	105377842	+	CBLB	chr3	105378031	-
intron-intron	ENST00000378707	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378707	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000359836	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000541735	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000343523	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378677	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000357033	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000474231	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378723	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378702	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000361471	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000378680	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000288447	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000378707		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000359836		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000541735		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000343523		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000378677		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000357033		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000474231		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000378723		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000378702		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000361471		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000378680		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000288447		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
intron-intron	ENST00000445312	ENST00000445312		ChiTaRS3.1			BQ889789	DMD	chrX	31254442	-	DMD	chrX	31255919	-
In-frame	ENST00000222284	ENST00000025301		ChiTaRS3.1			BG655839	TMEM147	chr19	36038300	-	AKAP11	chr13	42876630	-
In-frame	ENST00000392204	ENST00000025301		ChiTaRS3.1			BG655839	TMEM147	chr19	36038300	-	AKAP11	chr13	42876630	-
Frame-shit	ENST00000392205	ENST00000025301		ChiTaRS3.1			BG655839	TMEM147	chr19	36038300	-	AKAP11	chr13	42876630	-
intron-3UTR	ENST00000405409	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000405409	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000414461	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000414461	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000449924	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000449924	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000262829	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000262829	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000397303	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000397303	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000359369	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000359369	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000416721	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000416721	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000438146	ENST00000405409		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000414461		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000449924		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000262829		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000397303		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000359369		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000416721		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-intron	ENST00000438146	ENST00000438146		ChiTaRS3.1			AA242769	RBFOX2	chr22	36140233	+	RBFOX2	chr22	36139262	+
intron-3UTR	ENST00000329421	ENST00000329421		ChiTaRS3.1			BG758159	MARCKSL1	chr1	32799795	+	MARCKSL1	chr1	32799729	-
intron-intron	ENST00000577830	ENST00000577830		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577830	ENST00000407144		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577830	ENST00000360238		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577830	ENST00000577840		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577830	ENST00000578357		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000407144	ENST00000577830		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000407144	ENST00000407144		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000407144	ENST00000360238		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000407144	ENST00000577840		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000407144	ENST00000578357		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000360238	ENST00000577830		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000360238	ENST00000407144		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000360238	ENST00000360238		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000360238	ENST00000577840		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000360238	ENST00000578357		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577840	ENST00000577830		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577840	ENST00000407144		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577840	ENST00000360238		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577840	ENST00000577840		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000577840	ENST00000578357		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000578357	ENST00000577830		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000578357	ENST00000407144		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000578357	ENST00000360238		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000578357	ENST00000577840		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
intron-intron	ENST00000578357	ENST00000578357		ChiTaRS3.1			BF948209	CUEDC1	chr17	55944138	-	CUEDC1	chr17	55943646	+
Frame-shit	ENST00000408982	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000408982	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000408982	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000408982	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000408982	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
5CDS-intron	ENST00000408982	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000262477	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000262477	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000262477	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000262477	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000262477	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
5CDS-intron	ENST00000262477	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000537505	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000537505	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000537505	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000537505	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000537505	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
5CDS-intron	ENST00000537505	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000546142	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000546142	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000546142	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000546142	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000546142	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
5CDS-intron	ENST00000546142	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000341923	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000341923	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000341923	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000341923	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
Frame-shit	ENST00000341923	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
5CDS-intron	ENST00000341923	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3CDS	ENST00000570487	ENST00000408982		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3CDS	ENST00000570487	ENST00000262477		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3CDS	ENST00000570487	ENST00000537505		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3CDS	ENST00000570487	ENST00000546142		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3CDS	ENST00000570487	ENST00000341923		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-intron	ENST00000570487	ENST00000570487		ChiTaRS3.1			Z28809	RABEP1	chr17	5253776	-	RABEP1	chr17	5253869	+
intron-3UTR	ENST00000367903	ENST00000534336		ChiTaRS3.1			BF680089	RGS5	chr1	163150778	-	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000534288	ENST00000534336		ChiTaRS3.1			BF680089	RGS5	chr1	163150778	-	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000313961	ENST00000534336		ChiTaRS3.1			BF680089	RGS5	chr1	163150778	-	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000530507	ENST00000534336		ChiTaRS3.1			BF680089	RGS5	chr1	163150778	-	MALAT1	chr11	65266554	+
intron-3UTR	ENST00000527988	ENST00000534336		ChiTaRS3.1			BF680089	RGS5	chr1	163150778	-	MALAT1	chr11	65266554	+
intron-intron	ENST00000439590	ENST00000420993		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000439590	ENST00000395698		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000439590	ENST00000395701		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000439590	ENST00000299821		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000439590	ENST00000520297		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000311111	ENST00000420993		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000311111	ENST00000395698		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000311111	ENST00000395701		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000311111	ENST00000299821		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000311111	ENST00000520297		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000584577	ENST00000420993		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000584577	ENST00000395698		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000584577	ENST00000395701		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000584577	ENST00000299821		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000584577	ENST00000520297		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000534490	ENST00000420993		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000534490	ENST00000395698		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000534490	ENST00000395701		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000534490	ENST00000299821		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000534490	ENST00000520297		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
5UTR-intron	ENST00000533498	ENST00000420993		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
5UTR-intron	ENST00000533498	ENST00000395698		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
5UTR-intron	ENST00000533498	ENST00000395701		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
5UTR-intron	ENST00000533498	ENST00000299821		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
5UTR-intron	ENST00000533498	ENST00000520297		ChiTaRS3.1			BM810069	RPL38	chr17	72199954	-	NCAPH2	chr22	50962352	+
intron-intron	ENST00000348628	ENST00000370500		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-intron	ENST00000348628	ENST00000494819		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-intron	ENST00000351010	ENST00000370500		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-intron	ENST00000351010	ENST00000494819		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-intron	ENST00000398376	ENST00000370500		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-intron	ENST00000398376	ENST00000494819		ChiTaRS3.1			AW838949	CAMK2A	chr5	149605906	+	GTF2B	chr1	89341631	+
intron-3UTR	ENST00000544484	ENST00000530985		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000544484	ENST00000343678		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000544484	ENST00000278903		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000357008	ENST00000530985		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000357008	ENST00000343678		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000357008	ENST00000278903		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000309577	ENST00000530985		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000309577	ENST00000343678		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000309577	ENST00000278903		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000544040	ENST00000530985		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000544040	ENST00000343678		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000544040	ENST00000278903		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000540960	ENST00000530985		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000540960	ENST00000343678		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
intron-3UTR	ENST00000540960	ENST00000278903		ChiTaRS3.1			BF770169	CHD4	chr12	6690838	+	EI24	chr11	125450055	-
5CDS-intron	ENST00000334315	ENST00000176763		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
5CDS-intron	ENST00000334315	ENST00000517775		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
5CDS-intron	ENST00000378553	ENST00000176763		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
5CDS-intron	ENST00000378553	ENST00000517775		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
intron-intron	ENST00000563818	ENST00000176763		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
intron-intron	ENST00000563818	ENST00000517775		ChiTaRS3.1			BF848279	DNAAF1	chr16	84189315	+	STK10	chr5	171579509	-
intron-intron	ENST00000448637	ENST00000263228		ChiTaRS3.1			BF909239	LPP	chr3	187881342	+	UBE2R2	chr9	33859033	+
intron-intron	ENST00000312675	ENST00000263228		ChiTaRS3.1			BF909239	LPP	chr3	187881342	+	UBE2R2	chr9	33859033	+
intron-intron	ENST00000543006	ENST00000263228		ChiTaRS3.1			BF909239	LPP	chr3	187881342	+	UBE2R2	chr9	33859033	+
intron-intron	ENST00000471917	ENST00000263228		ChiTaRS3.1			BF909239	LPP	chr3	187881342	+	UBE2R2	chr9	33859033	+
intron-intron	ENST00000338523	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000338523	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000338523	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000338523	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000338523	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000338523	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000446848	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000446848	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000446848	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000446848	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000446848	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000446848	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000396376	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000396376	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000396376	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000396376	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000396376	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000396376	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409367	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409367	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409367	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409367	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409367	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409367	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409838	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409838	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409838	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000409838	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409838	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000409838	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000462993	ENST00000355014		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000462993	ENST00000368285		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000462993	ENST00000368284		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-5UTR	ENST00000462993	ENST00000368286		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000462993	ENST00000368282		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000462993	ENST00000487358		ChiTaRS3.1			DA982529	SNX10	chr7	26332580	+	SEMA4A	chr1	156123451	+
intron-intron	ENST00000316752	ENST00000605917		ChiTaRS3.1			BE904489	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-intron	ENST00000407787	ENST00000605917		ChiTaRS3.1			BE904489	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-intron	ENST00000398658	ENST00000605917		ChiTaRS3.1			BE904489	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-intron	ENST00000409968	ENST00000452400		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000409968	ENST00000267974		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000409968	ENST00000524223		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000272643	ENST00000452400		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000272643	ENST00000267974		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000272643	ENST00000524223		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000413152	ENST00000452400		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000413152	ENST00000267974		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000413152	ENST00000524223		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000543459	ENST00000452400		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000543459	ENST00000267974		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000543459	ENST00000524223		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000485379	ENST00000452400		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000485379	ENST00000267974		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000485379	ENST00000524223		ChiTaRS3.1			BE149299	THSD7B	chr2	137875796	-	NCOA2	chr8	71218685	-
intron-intron	ENST00000217909	ENST00000217909		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000217909	ENST00000336249		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000217909	ENST00000488158		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000336249	ENST00000217909		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000336249	ENST00000336249		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000336249	ENST00000488158		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000488158	ENST00000217909		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000488158	ENST00000336249		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-intron	ENST00000488158	ENST00000488158		ChiTaRS3.1			BE143569	SLC25A43	chrX	118556305	-	SLC25A43	chrX	118557828	-
intron-3UTR	ENST00000252711	ENST00000252711		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000471378		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000252711	ENST00000404554		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000307300		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000252711	ENST00000407129		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000471378	ENST00000252711		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000471378		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000471378	ENST00000404554		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000307300		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000471378	ENST00000407129		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000404554	ENST00000252711		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000471378		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000404554	ENST00000404554		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000307300		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000404554	ENST00000407129		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000307300	ENST00000252711		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000471378		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000307300	ENST00000404554		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000307300		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000307300	ENST00000407129		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000407129	ENST00000252711		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000471378		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-3UTR	ENST00000407129	ENST00000404554		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000307300		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000407129	ENST00000407129		ChiTaRS3.1			AA088569	NDUFA10	chr2	240900162	-	NDUFA10	chr2	240900328	+
intron-intron	ENST00000532456	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000532456	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000539648	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000528499	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000263574	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000345598	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000338167	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000278756	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000532456		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000539648		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000528499		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000263574		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000345598		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000338167		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000278756		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
5CDS-intron	ENST00000543137	ENST00000543137		ChiTaRS3.1			BE843869	APLP2	chr11	129992385	-	APLP2	chr11	129992202	+
intron-intron	ENST00000351842	ENST00000298310		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000351842	ENST00000382135		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000351842	ENST00000545773		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000351842	ENST00000556925		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000351842	ENST00000546046		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000351842	ENST00000556672		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000298310		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000382135		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000545773		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000556925		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000546046		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000265560	ENST00000556672		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000298310		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000382135		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000545773		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000556925		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000546046		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000488520	ENST00000556672		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000298310		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000382135		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000545773		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000556925		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000546046		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000416417	ENST00000556672		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000298310		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000382135		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000545773		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000556925		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000546046		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-intron	ENST00000415188	ENST00000556672		ChiTaRS3.1			BF878159	USP4	chr3	49321802	+	NEMF	chr14	50085758	-
intron-3CDS	ENST00000238616	ENST00000238616		ChiTaRS3.1			AW068399	NEK9	chr14	75563878	+	NEK9	chr14	75563832	-
intron-intron	ENST00000238616	ENST00000555763		ChiTaRS3.1			AW068399	NEK9	chr14	75563878	+	NEK9	chr14	75563832	-
intron-3CDS	ENST00000555763	ENST00000238616		ChiTaRS3.1			AW068399	NEK9	chr14	75563878	+	NEK9	chr14	75563832	-
intron-intron	ENST00000555763	ENST00000555763		ChiTaRS3.1			AW068399	NEK9	chr14	75563878	+	NEK9	chr14	75563832	-
intron-intron	ENST00000375915	ENST00000561500		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-3UTR	ENST00000375915	ENST00000379047		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-3UTR	ENST00000375915	ENST00000320623		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-intron	ENST00000375915	ENST00000379046		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-intron	ENST00000375915	ENST00000439109		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-intron	ENST00000375915	ENST00000564043		ChiTaRS3.1			BQ220009	FAM155A	chr13	108363730	+	NQO1	chr16	69744046	-
intron-3CDS	ENST00000373277	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373277	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373277	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373274	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373274	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000420366	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000420366	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000429553	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000429553	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000373276	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000373276	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000314830	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000314830	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373277		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373274		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000420366		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000429553		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000373276		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-3CDS	ENST00000471939	ENST00000314830		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
intron-5UTR	ENST00000471939	ENST00000471939		ChiTaRS3.1			BF991249	SH2D3C	chr9	130505161	-	SH2D3C	chr9	130506938	-
Frame-shit	ENST00000261574	ENST00000261574		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000261574	ENST00000490680		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000261574	ENST00000539640		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
5CDS-intron	ENST00000261574	ENST00000493492		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000490680	ENST00000261574		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000490680	ENST00000490680		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000490680	ENST00000539640		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
5CDS-intron	ENST00000490680	ENST00000493492		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000539640	ENST00000261574		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000539640	ENST00000490680		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
Frame-shit	ENST00000539640	ENST00000539640		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
5CDS-intron	ENST00000539640	ENST00000493492		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
intron-3CDS	ENST00000493492	ENST00000261574		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
intron-3CDS	ENST00000493492	ENST00000490680		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
intron-3CDS	ENST00000493492	ENST00000539640		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
intron-intron	ENST00000493492	ENST00000493492		ChiTaRS3.1			AW606649	IPO5	chr13	98670890	-	IPO5	chr13	98669075	+
intron-3CDS	ENST00000296511	ENST00000400301		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000296511	ENST00000308271		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000296511	ENST00000374732		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000296511	ENST00000529637		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000296511	ENST00000479177		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000296511	ENST00000421625		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000501272	ENST00000400301		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000501272	ENST00000308271		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000501272	ENST00000374732		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000501272	ENST00000529637		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000501272	ENST00000479177		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000501272	ENST00000421625		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000515017	ENST00000400301		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000515017	ENST00000308271		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000515017	ENST00000374732		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000515017	ENST00000529637		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000515017	ENST00000479177		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000515017	ENST00000421625		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000509016	ENST00000400301		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000509016	ENST00000308271		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000509016	ENST00000374732		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-3CDS	ENST00000509016	ENST00000529637		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000509016	ENST00000479177		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
intron-intron	ENST00000509016	ENST00000421625		ChiTaRS3.1			BF381089	ANXA5	chr4	122593747	+	USP48	chr1	22028010	+
3UTR-3UTR	ENST00000372577	ENST00000372577		ChiTaRS3.1			BG397339	NUP188	chr9	131769268	-	NUP188	chr9	131769308	+
3UTR-intron	ENST00000372577	ENST00000550219		ChiTaRS3.1			BG397339	NUP188	chr9	131769268	-	NUP188	chr9	131769308	+
intron-3UTR	ENST00000550219	ENST00000372577		ChiTaRS3.1			BG397339	NUP188	chr9	131769268	-	NUP188	chr9	131769308	+
intron-intron	ENST00000550219	ENST00000550219		ChiTaRS3.1			BG397339	NUP188	chr9	131769268	-	NUP188	chr9	131769308	+
5CDS-intron	ENST00000304218	ENST00000316292		ChiTaRS3.1			BM827989	HIST1H1E	chr6	26157342	+	EEF1A1	chr6	74230755	-
5CDS-intron	ENST00000304218	ENST00000491404		ChiTaRS3.1			BM827989	HIST1H1E	chr6	26157342	+	EEF1A1	chr6	74230755	-
5CDS-5UTR	ENST00000304218	ENST00000309268		ChiTaRS3.1			BM827989	HIST1H1E	chr6	26157342	+	EEF1A1	chr6	74230755	-
5CDS-intron	ENST00000304218	ENST00000331523		ChiTaRS3.1			BM827989	HIST1H1E	chr6	26157342	+	EEF1A1	chr6	74230755	-
intron-intron	ENST00000394412	ENST00000395957		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000395958		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000457309		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000395956		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000353245		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000522542		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000521309		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000522819		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000395953		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000395948		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000395951		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000419477		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000394412	ENST00000492736		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395957		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395958		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000457309		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395956		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000353245		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000522542		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000521309		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000522819		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395953		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395948		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000395951		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000419477		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000558928	ENST00000492736		ChiTaRS3.1			BF329619	KIF7	chr15	90175272	-	YWHAZ	chr8	101935384	-
intron-intron	ENST00000369005	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369005	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000513429	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515273	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000515603	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000453444	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000358010	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000334433	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369001	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369000	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000360561	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000368999	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000369004	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000260733	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000369005		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000513429		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000515273		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000515603		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000453444		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000358010		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000334433		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000369001		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000369000		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000360561		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000368999		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000369004		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000260733		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-intron	ENST00000493951	ENST00000493951		ChiTaRS3.1			BF994569	TACC2	chr10	123799701	+	TACC2	chr10	123800006	-
intron-3CDS	ENST00000359470	ENST00000359470		ChiTaRS3.1			BC018959	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-5UTR	ENST00000359470	ENST00000461135		ChiTaRS3.1			BC018959	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-3CDS	ENST00000461135	ENST00000359470		ChiTaRS3.1			BC018959	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-5UTR	ENST00000461135	ENST00000461135		ChiTaRS3.1			BC018959	C1orf116	chr1	207198403	+	C1orf116	chr1	207198364	-
intron-3CDS	ENST00000604609	ENST00000366603		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
intron-3CDS	ENST00000604609	ENST00000264183		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
intron-3CDS	ENST00000604609	ENST00000349213		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
intron-intron	ENST00000604609	ENST00000494543		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
3UTR-3CDS	ENST00000252809	ENST00000366603		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
3UTR-3CDS	ENST00000252809	ENST00000264183		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
3UTR-3CDS	ENST00000252809	ENST00000349213		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
3UTR-intron	ENST00000252809	ENST00000494543		ChiTaRS3.1			BI054889	GDF15	chr19	18499891	+	ARID4B	chr1	235409777	+
intron-intron	ENST00000251170	ENST00000382582		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000355994		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397875		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397866		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397865		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000527041		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000359645		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000528160		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397869		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000354542		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000526111		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000580402		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000579129		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000578193		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397863		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000397860		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
intron-intron	ENST00000251170	ENST00000487778		ChiTaRS3.1			BF933809	SEC14L5	chr16	5061729	-	MBP	chr18	74702956	-
5UTR-3CDS	ENST00000381602	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381602	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381602	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381602	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397962	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397962	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397962	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000309776	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000309776	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000309776	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000509513	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000509513	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000509513	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000397959	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000397959	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000397959	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000381591	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000381591	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000381591	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000403354	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000403354	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000403354	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381607	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381607	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381607	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000402736	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000402736	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000402736	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000602682	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000602682	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000602682	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381604	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381604	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381604	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-3CDS	ENST00000381584	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-5UTR	ENST00000381584	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5UTR-intron	ENST00000381584	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
Frame-shit	ENST00000558098	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-5UTR	ENST00000558098	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
5CDS-intron	ENST00000558098	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000545619	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000545619	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000545619	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000535374	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000535374	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000535374	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000344646		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374366		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-3CDS	ENST00000473115	ENST00000374371		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-5UTR	ENST00000473115	ENST00000374370		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000473115	ENST00000335258		ChiTaRS3.1			DB487719	ZMYND11	chr10	226068	+	ZFAND4	chr10	46143982	-
intron-intron	ENST00000397239	ENST00000397239		ChiTaRS3.1			L44569	DEK	chr6	18258638	+	DEK	chr6	18236683	+
intron-intron	ENST00000397239	ENST00000244776		ChiTaRS3.1			L44569	DEK	chr6	18258638	+	DEK	chr6	18236683	+
intron-intron	ENST00000244776	ENST00000397239		ChiTaRS3.1			L44569	DEK	chr6	18258638	+	DEK	chr6	18236683	+
intron-intron	ENST00000244776	ENST00000244776		ChiTaRS3.1			L44569	DEK	chr6	18258638	+	DEK	chr6	18236683	+
intron-3UTR	ENST00000368811	ENST00000217131		ChiTaRS3.1			BF690529	S100A10	chr1	151955741	+	CTSZ	chr20	57570385	+
intron-3UTR	ENST00000368809	ENST00000217131		ChiTaRS3.1			BF690529	S100A10	chr1	151955741	+	CTSZ	chr20	57570385	+
intron-3UTR	ENST00000478574	ENST00000217131		ChiTaRS3.1			BF690529	S100A10	chr1	151955741	+	CTSZ	chr20	57570385	+
5UTR-3CDS	ENST00000202917	ENST00000202917		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000202917	ENST00000445409		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000202917	ENST00000452357		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000202917	ENST00000551241		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000202917	ENST00000553185		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000445409	ENST00000202917		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000445409	ENST00000445409		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000445409	ENST00000452357		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000445409	ENST00000551241		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000445409	ENST00000553185		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000452357	ENST00000202917		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000452357	ENST00000445409		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000452357	ENST00000452357		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000452357	ENST00000551241		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
5UTR-3CDS	ENST00000452357	ENST00000553185		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000551241	ENST00000202917		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000551241	ENST00000445409		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000551241	ENST00000452357		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000551241	ENST00000551241		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000551241	ENST00000553185		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000553185	ENST00000202917		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000553185	ENST00000445409		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000553185	ENST00000452357		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000553185	ENST00000551241		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000553185	ENST00000553185		ChiTaRS3.1			BQ921779	OAS1	chr12	113344814	-	OAS1	chr12	113344864	+
intron-3CDS	ENST00000392951	ENST00000392951		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-3CDS	ENST00000392951	ENST00000530649		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-3CDS	ENST00000392951	ENST00000532870		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000392951		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000530649		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000530649	ENST00000532870		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000392951		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000530649		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
3UTR-3CDS	ENST00000532870	ENST00000532870		ChiTaRS3.1			AA655019	TAGLN	chr11	117075307	+	TAGLN	chr11	117075025	-
intron-3CDS	ENST00000360772	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000360772	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000360772	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360772	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000360772	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000359169	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000359169	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000359169	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000359169	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000359169	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000360304	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000360304	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000360304	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000360304	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000360304	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000418370	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000418370	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000418370	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000418370	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000418370	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000578202	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000578202	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000578202	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000578202	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000578202	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000354792	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000354792	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000354792	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000354792	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000354792	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000346322	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000346322	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000346322	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000346322	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000346322	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000583087	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000583087	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000583087	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000583087	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000583087	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000475616	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000475616	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000475616	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000475616	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000475616	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000510775	ENST00000360772		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000510775	ENST00000359169		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-3CDS	ENST00000510775	ENST00000360304		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000418370		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000578202		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000354792		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000346322		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000583087		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000510775	ENST00000475616		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-5UTR	ENST00000510775	ENST00000510775		ChiTaRS3.1			BG945379	MYLK	chr3	123385168	-	MYLK	chr3	123401122	+
intron-intron	ENST00000323868	ENST00000323868		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000323868	ENST00000374144		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000323868	ENST00000470615		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000374144	ENST00000323868		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000374144	ENST00000374144		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000374144	ENST00000470615		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000470615	ENST00000323868		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000470615	ENST00000374144		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000470615	ENST00000470615		ChiTaRS3.1			BF825259	C10orf71	chr10	50524973	-	C10orf71	chr10	50524992	+
intron-intron	ENST00000458694	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000458694	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000458694	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000458694	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000458694	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000458694	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000359201	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394263	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394259	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000394260	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000458694		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000359201		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000394263		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000394259		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000394260		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
intron-intron	ENST00000463606	ENST00000463606		ChiTaRS3.1			AI133669	PRICKLE4	chr6	41755433	-	PRICKLE4	chr6	41757304	+
5UTR-3CDS	ENST00000528838	ENST00000528838		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
5UTR-intron	ENST00000528838	ENST00000400780		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
5UTR-intron	ENST00000528838	ENST00000528842		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-3CDS	ENST00000400780	ENST00000528838		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000400780	ENST00000400780		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000400780	ENST00000528842		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-3CDS	ENST00000528842	ENST00000528838		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000528842	ENST00000400780		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000528842	ENST00000528842		ChiTaRS3.1			BE671029	HSF1	chr8	145515308	-	HSF1	chr8	145515468	+
intron-intron	ENST00000334274	ENST00000334274		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000334274	ENST00000530171		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000334274	ENST00000432887		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000334274	ENST00000531632		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000334274	ENST00000324357		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530171	ENST00000334274		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530171	ENST00000530171		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530171	ENST00000432887		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530171	ENST00000531632		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530171	ENST00000324357		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000432887	ENST00000334274		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000432887	ENST00000530171		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000432887	ENST00000432887		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000432887	ENST00000531632		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000432887	ENST00000324357		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000531632	ENST00000334274		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000531632	ENST00000530171		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000531632	ENST00000432887		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000531632	ENST00000531632		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000531632	ENST00000324357		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000324357	ENST00000334274		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000324357	ENST00000530171		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000324357	ENST00000432887		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000324357	ENST00000531632		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000324357	ENST00000324357		ChiTaRS3.1			CA952479	TCP11L1	chr11	33080027	-	TCP11L1	chr11	33099500	-
intron-intron	ENST00000530124	ENST00000359660		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000530124	ENST00000542267		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000530124	ENST00000496714		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000257247	ENST00000359660		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000257247	ENST00000542267		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000257247	ENST00000496714		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000525875	ENST00000359660		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000525875	ENST00000542267		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000525875	ENST00000496714		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000378024	ENST00000359660		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000378024	ENST00000542267		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000378024	ENST00000496714		ChiTaRS3.1			AA535089	AHNAK	chr11	62283641	+	FBXL17	chr5	107504855	+
intron-intron	ENST00000265631	ENST00000265631		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000265631	ENST00000416240		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000265631	ENST00000542654		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000265631	ENST00000494085		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000416240	ENST00000265631		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000416240	ENST00000416240		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000416240	ENST00000542654		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000416240	ENST00000494085		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000542654	ENST00000265631		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000542654	ENST00000416240		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000542654	ENST00000542654		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000542654	ENST00000494085		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000494085	ENST00000265631		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000494085	ENST00000416240		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000494085	ENST00000542654		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000494085	ENST00000494085		ChiTaRS3.1			BE072029	SLC25A13	chr7	95786868	+	SLC25A13	chr7	95786152	+
intron-intron	ENST00000462139	ENST00000462139		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000462139	ENST00000294753		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000462139	ENST00000366498		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000294753	ENST00000462139		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000294753	ENST00000294753		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000294753	ENST00000366498		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000366498	ENST00000462139		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000366498	ENST00000294753		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
intron-intron	ENST00000366498	ENST00000366498		ChiTaRS3.1			BX117429	ZNF496	chr1	247477293	-	ZNF496	chr1	247478914	-
3UTR-3UTR	ENST00000374723	ENST00000374723		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-3UTR	ENST00000374723	ENST00000374720		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374723	ENST00000374724		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374723	ENST00000343170		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374723	ENST00000607692		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-3UTR	ENST00000374720	ENST00000374723		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-3UTR	ENST00000374720	ENST00000374720		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374720	ENST00000374724		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374720	ENST00000343170		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-intron	ENST00000374720	ENST00000607692		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000374724	ENST00000374723		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000374724	ENST00000374720		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000374724	ENST00000374724		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000374724	ENST00000343170		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000374724	ENST00000607692		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000343170	ENST00000374723		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000343170	ENST00000374720		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000343170	ENST00000374724		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000343170	ENST00000343170		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000343170	ENST00000607692		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000607692	ENST00000374723		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-3UTR	ENST00000607692	ENST00000374720		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000607692	ENST00000374724		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000607692	ENST00000343170		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
intron-intron	ENST00000607692	ENST00000607692		ChiTaRS3.1			C02459	SLC44A1	chr9	108152447	-	SLC44A1	chr9	108153184	+
3UTR-3UTR	ENST00000244496	ENST00000244496		ChiTaRS3.1			AW973729	RRP36	chr6	42997246	+	RRP36	chr6	42997315	-
3UTR-intron	ENST00000244496	ENST00000607555		ChiTaRS3.1			AW973729	RRP36	chr6	42997246	+	RRP36	chr6	42997315	-
intron-3UTR	ENST00000607555	ENST00000244496		ChiTaRS3.1			AW973729	RRP36	chr6	42997246	+	RRP36	chr6	42997315	-
intron-intron	ENST00000607555	ENST00000607555		ChiTaRS3.1			AW973729	RRP36	chr6	42997246	+	RRP36	chr6	42997315	-
Frame-shit	ENST00000434536	ENST00000434536		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
Frame-shit	ENST00000434536	ENST00000252512		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000434536	ENST00000518017		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000434536	ENST00000433566		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
Frame-shit	ENST00000252512	ENST00000434536		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
Frame-shit	ENST00000252512	ENST00000252512		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000252512	ENST00000518017		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000252512	ENST00000433566		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
3UTR-3CDS	ENST00000518017	ENST00000434536		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
3UTR-3CDS	ENST00000518017	ENST00000252512		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
3UTR-intron	ENST00000518017	ENST00000518017		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
3UTR-intron	ENST00000518017	ENST00000433566		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
Frame-shit	ENST00000433566	ENST00000434536		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
Frame-shit	ENST00000433566	ENST00000252512		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000433566	ENST00000518017		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
5CDS-intron	ENST00000433566	ENST00000433566		ChiTaRS3.1			BQ359489	XPO7	chr8	21832285	+	XPO7	chr8	21835313	-
3UTR-3UTR	ENST00000353703	ENST00000353703		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
3UTR-intron	ENST00000353703	ENST00000479421		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
3UTR-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
intron-3UTR	ENST00000479421	ENST00000353703		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
intron-intron	ENST00000479421	ENST00000479421		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
intron-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
3UTR-3UTR	ENST00000372839	ENST00000353703		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
3UTR-intron	ENST00000372839	ENST00000479421		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
3UTR-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			BF898629	YWHAB	chr20	43536396	-	YWHAB	chr20	43536501	+
intron-3CDS	ENST00000274569	ENST00000274569		ChiTaRS3.1			BF847639	PCYOX1L	chr5	148745405	+	PCYOX1L	chr5	148745602	-
intron-3CDS	ENST00000274569	ENST00000514349		ChiTaRS3.1			BF847639	PCYOX1L	chr5	148745405	+	PCYOX1L	chr5	148745602	-
intron-3CDS	ENST00000514349	ENST00000274569		ChiTaRS3.1			BF847639	PCYOX1L	chr5	148745405	+	PCYOX1L	chr5	148745602	-
intron-3CDS	ENST00000514349	ENST00000514349		ChiTaRS3.1			BF847639	PCYOX1L	chr5	148745405	+	PCYOX1L	chr5	148745602	-
intron-3UTR	ENST00000484532	ENST00000276297		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000358919		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000512044		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000316609		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000511869		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000510318		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000484532	ENST00000520226		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-3UTR	ENST00000234875	ENST00000276297		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000358919		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000512044		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000316609		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000511869		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000510318		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000234875	ENST00000520226		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-3UTR	ENST00000497965	ENST00000276297		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000358919		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000512044		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000316609		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000511869		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000510318		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000497965	ENST00000520226		ChiTaRS3.1			CR738829	RPL22	chr1	6245384	-	DLC1	chr8	12941285	-
intron-intron	ENST00000254066	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000254066	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000254066	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000254066	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000254066	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000254066	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394089	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000425707	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394086	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000394081	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000254066		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000394089		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000425707		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000394086		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000394081		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-intron	ENST00000420042	ENST00000420042		ChiTaRS3.1			R47409	RARA	chr17	38518318	+	RARA	chr17	38517397	+
intron-5UTR	ENST00000370532	ENST00000372309		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372302		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000247291		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372300		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000472942		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372298		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372297		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372312		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
intron-intron	ENST00000370532	ENST00000372301		ChiTaRS3.1			DA389009	CDR1	chrX	139866784	+	AIF1L	chr9	133971918	+
3UTR-3CDS	ENST00000361677	ENST00000522532		ChiTaRS3.1			AI174779	RUNDC1	chr17	41143899	-	NDUFB9	chr8	125555358	+
3UTR-3CDS	ENST00000361677	ENST00000276689		ChiTaRS3.1			AI174779	RUNDC1	chr17	41143899	-	NDUFB9	chr8	125555358	+
3UTR-3CDS	ENST00000361677	ENST00000518008		ChiTaRS3.1			AI174779	RUNDC1	chr17	41143899	-	NDUFB9	chr8	125555358	+
3UTR-3CDS	ENST00000361677	ENST00000517367		ChiTaRS3.1			AI174779	RUNDC1	chr17	41143899	-	NDUFB9	chr8	125555358	+
3UTR-intron	ENST00000361677	ENST00000517830		ChiTaRS3.1			AI174779	RUNDC1	chr17	41143899	-	NDUFB9	chr8	125555358	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			BF337529	NEAT1	chr11	65193730	-	NEAT1	chr11	65193778	+
3UTR-3UTR	ENST00000336314	ENST00000336314		ChiTaRS3.1			AK057839	LARP1	chr5	154196125	+	LARP1	chr5	154194531	+
5CDS-intron	ENST00000540080	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000540080	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000540080	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000540080	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000433436	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000433436	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000433436	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000433436	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000538225	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000538225	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000538225	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000538225	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000345519	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000345519	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000345519	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000345519	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000470744	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000470744	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000470744	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000470744	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000242285	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000242285	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000242285	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000242285	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000466396	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000466396	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000466396	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000466396	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000396603	ENST00000311637		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000396603	ENST00000338821		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000396603	ENST00000402822		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
5CDS-intron	ENST00000396603	ENST00000477492		ChiTaRS3.1			BF854279	CLTA	chr9	36211632	-	ATP9A	chr20	50222895	+
intron-intron	ENST00000391976	ENST00000416600		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000391976	ENST00000428216		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000391976	ENST00000358134		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000310931	ENST00000416600		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000310931	ENST00000428216		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000310931	ENST00000358134		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000391975	ENST00000416600		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000391975	ENST00000428216		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000391975	ENST00000358134		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000427183	ENST00000416600		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000427183	ENST00000428216		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000427183	ENST00000358134		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000476807	ENST00000416600		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000476807	ENST00000428216		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-intron	ENST00000476807	ENST00000358134		ChiTaRS3.1			BF928759	HDLBP	chr2	242178992	-	MAVS	chr20	3856375	-
intron-3CDS	ENST00000357393	ENST00000293379		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-intron	ENST00000357393	ENST00000547744		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-3CDS	ENST00000370001	ENST00000293379		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-intron	ENST00000370001	ENST00000547744		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-3CDS	ENST00000477908	ENST00000293379		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-intron	ENST00000477908	ENST00000547744		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-3CDS	ENST00000369994	ENST00000293379		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-intron	ENST00000369994	ENST00000547744		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-3CDS	ENST00000369995	ENST00000293379		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-intron	ENST00000369995	ENST00000547744		ChiTaRS3.1			AA367789	AKNAD1	chr1	109460587	-	ITGA5	chr12	54797010	-
intron-3UTR	ENST00000370551	ENST00000437941		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3UTR	ENST00000370551	ENST00000342203		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370551	ENST00000605755		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370551	ENST00000603677		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370551	ENST00000370612		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3UTR	ENST00000370550	ENST00000437941		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3UTR	ENST00000370550	ENST00000342203		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370550	ENST00000605755		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370550	ENST00000603677		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000370550	ENST00000370612		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3UTR	ENST00000356813	ENST00000437941		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3UTR	ENST00000356813	ENST00000342203		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000356813	ENST00000605755		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000356813	ENST00000603677		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-intron	ENST00000356813	ENST00000370612		ChiTaRS3.1			BF223279	HS2ST1	chr1	87512716	+	SSX2IP	chr1	85112268	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911249	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911249	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911249	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911249	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3UTR	ENST00000325110	ENST00000325110		ChiTaRS3.1			BG290679	HMGCS1	chr5	43290175	+	HMGCS1	chr5	43290105	-
intron-3UTR	ENST00000325110	ENST00000433297		ChiTaRS3.1			BG290679	HMGCS1	chr5	43290175	+	HMGCS1	chr5	43290105	-
intron-3UTR	ENST00000433297	ENST00000325110		ChiTaRS3.1			BG290679	HMGCS1	chr5	43290175	+	HMGCS1	chr5	43290105	-
intron-3UTR	ENST00000433297	ENST00000433297		ChiTaRS3.1			BG290679	HMGCS1	chr5	43290175	+	HMGCS1	chr5	43290105	-
intron-3CDS	ENST00000345097	ENST00000377526		ChiTaRS3.1			BI025029	FOXN3	chr14	89744376	+	AUP1	chr2	74754919	-
intron-3CDS	ENST00000261302	ENST00000377526		ChiTaRS3.1			BI025029	FOXN3	chr14	89744376	+	AUP1	chr2	74754919	-
intron-3CDS	ENST00000557258	ENST00000377526		ChiTaRS3.1			BI025029	FOXN3	chr14	89744376	+	AUP1	chr2	74754919	-
intron-3CDS	ENST00000555353	ENST00000377526		ChiTaRS3.1			BI025029	FOXN3	chr14	89744376	+	AUP1	chr2	74754919	-
intron-3CDS	ENST00000555658	ENST00000377526		ChiTaRS3.1			BI025029	FOXN3	chr14	89744376	+	AUP1	chr2	74754919	-
intron-intron	ENST00000225964	ENST00000471714		ChiTaRS3.1			AI685149	COL1A1	chr17	48262813	+	ABI3BP	chr3	100551970	+
intron-intron	ENST00000225964	ENST00000284322		ChiTaRS3.1			AI685149	COL1A1	chr17	48262813	+	ABI3BP	chr3	100551970	+
intron-intron	ENST00000225964	ENST00000495063		ChiTaRS3.1			AI685149	COL1A1	chr17	48262813	+	ABI3BP	chr3	100551970	+
intron-intron	ENST00000225964	ENST00000383691		ChiTaRS3.1			AI685149	COL1A1	chr17	48262813	+	ABI3BP	chr3	100551970	+
intron-intron	ENST00000225964	ENST00000532144		ChiTaRS3.1			AI685149	COL1A1	chr17	48262813	+	ABI3BP	chr3	100551970	+
intron-3UTR	ENST00000380672	ENST00000379672		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380672	ENST00000340825		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380672	ENST00000262444		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380672	ENST00000578087		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380667	ENST00000379672		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380667	ENST00000340825		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380667	ENST00000262444		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380667	ENST00000578087		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000545497	ENST00000379672		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000545497	ENST00000340825		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000545497	ENST00000262444		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000545497	ENST00000578087		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380666	ENST00000379672		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380666	ENST00000340825		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380666	ENST00000262444		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380666	ENST00000578087		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000471301	ENST00000379672		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000471301	ENST00000340825		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000471301	ENST00000262444		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000471301	ENST00000578087		ChiTaRS3.1			BI012359	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000339561	ENST00000339561		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000185206		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000544153		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000339561	ENST00000486570		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000339561		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000185206		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000544153		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000185206	ENST00000486570		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000339561		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000185206		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000544153		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000544153	ENST00000486570		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000339561		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000185206		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000544153		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000486570	ENST00000486570		ChiTaRS3.1			BI057689	CLIC5	chr6	45934143	+	CLIC5	chr6	45933315	+
intron-intron	ENST00000457008	ENST00000300093		ChiTaRS3.1			AW362679	ERN2	chr16	23705535	+	PLK1	chr16	23701825	-
intron-intron	ENST00000457008	ENST00000564202		ChiTaRS3.1			AW362679	ERN2	chr16	23705535	+	PLK1	chr16	23701825	-
intron-intron	ENST00000256797	ENST00000300093		ChiTaRS3.1			AW362679	ERN2	chr16	23705535	+	PLK1	chr16	23701825	-
intron-intron	ENST00000256797	ENST00000564202		ChiTaRS3.1			AW362679	ERN2	chr16	23705535	+	PLK1	chr16	23701825	-
intron-3UTR	ENST00000376007	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000376007	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000469577	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000469577	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000376033	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000376033	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000549037	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000549037	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000551794	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000551794	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000435971	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000435971	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000485195	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000485195	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000428775	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000428775	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000550674	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000550674	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000548373	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000548373	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000439762	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000439762	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000416335	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000416335	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000473169	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000473169	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000550109	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000550109	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000550609	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000550609	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000454306	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000454306	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000468994	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000468994	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000432252	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000432252	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000551341	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000551341	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000547457	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000547457	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000383464	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000383464	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000470109	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000470109	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000383455	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000383455	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000547056	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000547056	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000549383	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000549383	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000458561	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000458561	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000466607	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000466607	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000414956	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000414956	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000547669	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000547669	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000549768	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000549768	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000430737	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000430737	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000484613	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000484613	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000422962	ENST00000290649		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-intron	ENST00000422962	ENST00000564283		ChiTaRS3.1			BF870809	PRRC2A	chr6	2982781	+	AMFR	chr16	56395779	+
intron-3UTR	ENST00000267163	ENST00000261700		ChiTaRS3.1			BE844049	RB1	chr13	48986415	-	C14orf166	chr14	52471249	-
intron-3UTR	ENST00000267163	ENST00000556760		ChiTaRS3.1			BE844049	RB1	chr13	48986415	-	C14orf166	chr14	52471249	-
intron-3UTR	ENST00000484879	ENST00000261700		ChiTaRS3.1			BE844049	RB1	chr13	48986415	-	C14orf166	chr14	52471249	-
intron-3UTR	ENST00000484879	ENST00000556760		ChiTaRS3.1			BE844049	RB1	chr13	48986415	-	C14orf166	chr14	52471249	-
intron-3UTR	ENST00000439040	ENST00000439040		ChiTaRS3.1			BE896449	ATP13A3	chr3	194124835	+	ATP13A3	chr3	194124758	-
intron-3UTR	ENST00000439040	ENST00000256031		ChiTaRS3.1			BE896449	ATP13A3	chr3	194124835	+	ATP13A3	chr3	194124758	-
intron-3UTR	ENST00000256031	ENST00000439040		ChiTaRS3.1			BE896449	ATP13A3	chr3	194124835	+	ATP13A3	chr3	194124758	-
intron-3UTR	ENST00000256031	ENST00000256031		ChiTaRS3.1			BE896449	ATP13A3	chr3	194124835	+	ATP13A3	chr3	194124758	-
intron-intron	ENST00000283415	ENST00000370489		ChiTaRS3.1			DB311369	LPCAT1	chr5	1461599	+	ENTPD7	chr10	101468607	-
intron-intron	ENST00000503252	ENST00000370489		ChiTaRS3.1			DB311369	LPCAT1	chr5	1461599	+	ENTPD7	chr10	101468607	-
intron-3UTR	ENST00000402538	ENST00000269389		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000402538	ENST00000580437		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000403687	ENST00000269389		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000403687	ENST00000580437		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000407811	ENST00000269389		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000407811	ENST00000580437		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000482731	ENST00000269389		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000482731	ENST00000580437		ChiTaRS3.1			BE184039	RASGRP3	chr2	33757432	-	SECTM1	chr17	80279843	+
intron-3UTR	ENST00000297261	ENST00000429989		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000297261	ENST00000481124		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-3UTR	ENST00000297261	ENST00000372164		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000297261	ENST00000372158		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000297261	ENST00000341863		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000297261	ENST00000372156		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-3UTR	ENST00000297261	ENST00000265450		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-3UTR	ENST00000472308	ENST00000429989		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000472308	ENST00000481124		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-3UTR	ENST00000472308	ENST00000372164		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000472308	ENST00000372158		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000472308	ENST00000341863		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000472308	ENST00000372156		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-3UTR	ENST00000472308	ENST00000265450		ChiTaRS3.1			BF829979	SHH	chr7	155599436	+	TSPAN14	chr10	82278824	-
intron-intron	ENST00000317276	ENST00000371600		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000317276	ENST00000371601		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000317276	ENST00000488145		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000581082	ENST00000371600		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000581082	ENST00000371601		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000581082	ENST00000488145		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000578089	ENST00000371600		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000578089	ENST00000371601		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000578089	ENST00000488145		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000354903	ENST00000371600		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000354903	ENST00000371601		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
intron-intron	ENST00000354903	ENST00000488145		ChiTaRS3.1			BI908289	PER1	chr17	8059492	-	NPDC1	chr9	139936239	-
5CDS-intron	ENST00000435275	ENST00000458420		ChiTaRS3.1			AI810209	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000440692	ENST00000458420		ChiTaRS3.1			AI810209	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000372360	ENST00000458420		ChiTaRS3.1			AI810209	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
3UTR-intron	ENST00000476545	ENST00000458420		ChiTaRS3.1			AI810209	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
5CDS-intron	ENST00000360830	ENST00000458420		ChiTaRS3.1			AI810209	RPS24	chr10	79797031	-	CLSTN2	chr3	139768442	-
intron-3UTR	ENST00000450253	ENST00000450253		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000450253	ENST00000280892		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000450253	ENST00000504432		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000450253	ENST00000505992		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000450253	ENST00000504472		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-3UTR	ENST00000280892	ENST00000450253		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000280892	ENST00000280892		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000280892	ENST00000504432		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000280892	ENST00000505992		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000280892	ENST00000504472		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-3UTR	ENST00000504432	ENST00000450253		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504432	ENST00000280892		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504432	ENST00000504432		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504432	ENST00000505992		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504432	ENST00000504472		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-3UTR	ENST00000505992	ENST00000450253		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000505992	ENST00000280892		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000505992	ENST00000504432		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000505992	ENST00000505992		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000505992	ENST00000504472		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-3UTR	ENST00000504472	ENST00000450253		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504472	ENST00000280892		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504472	ENST00000504432		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504472	ENST00000505992		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000504472	ENST00000504472		ChiTaRS3.1			CB240919	EIF4E	chr4	99793191	+	EIF4E	chr4	99793280	-
intron-intron	ENST00000373803	ENST00000297293		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000373803	ENST00000493372		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000359675	ENST00000297293		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000359675	ENST00000493372		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000349004	ENST00000297293		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000349004	ENST00000493372		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000373773	ENST00000297293		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000373773	ENST00000493372		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000540765	ENST00000297293		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-intron	ENST00000540765	ENST00000493372		ChiTaRS3.1			DB299319	NDRG3	chr20	35280371	+	LMTK2	chr7	97810509	-
intron-5UTR	ENST00000202816	ENST00000397967		ChiTaRS3.1			D26129	ESF1	chr20	13713106	+	RNASE1	chr14	21270990	-
intron-5UTR	ENST00000202816	ENST00000340900		ChiTaRS3.1			D26129	ESF1	chr20	13713106	+	RNASE1	chr14	21270990	-
intron-intron	ENST00000202816	ENST00000412779		ChiTaRS3.1			D26129	ESF1	chr20	13713106	+	RNASE1	chr14	21270990	-
intron-5UTR	ENST00000202816	ENST00000555698		ChiTaRS3.1			D26129	ESF1	chr20	13713106	+	RNASE1	chr14	21270990	-
intron-5UTR	ENST00000202816	ENST00000397970		ChiTaRS3.1			D26129	ESF1	chr20	13713106	+	RNASE1	chr14	21270990	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			AI655799	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			AI655799	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			AI655799	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			AI655799	SRRM2	chr16	2806484	-	SRRM2	chr16	2815366	-
3UTR-3UTR	ENST00000307602	ENST00000307602		ChiTaRS3.1			AI365359	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
3UTR-intron	ENST00000307602	ENST00000524839		ChiTaRS3.1			AI365359	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
intron-3UTR	ENST00000524839	ENST00000307602		ChiTaRS3.1			AI365359	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
intron-intron	ENST00000524839	ENST00000524839		ChiTaRS3.1			AI365359	HOOK3	chr8	42877091	-	HOOK3	chr8	42878064	-
intron-intron	ENST00000452400	ENST00000452400		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000452400	ENST00000267974		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000452400	ENST00000524223		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000267974	ENST00000452400		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000267974	ENST00000267974		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000267974	ENST00000524223		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000524223	ENST00000452400		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000524223	ENST00000267974		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000524223	ENST00000524223		ChiTaRS3.1			BF811949	NCOA2	chr8	71092293	+	NCOA2	chr8	71091825	-
intron-intron	ENST00000561976	ENST00000305135		ChiTaRS3.1			BF761359	VPS9D1	chr16	89785837	+	YEATS2	chr3	183507691	+
intron-intron	ENST00000389386	ENST00000305135		ChiTaRS3.1			BF761359	VPS9D1	chr16	89785837	+	YEATS2	chr3	183507691	+
intron-intron	ENST00000565452	ENST00000305135		ChiTaRS3.1			BF761359	VPS9D1	chr16	89785837	+	YEATS2	chr3	183507691	+
intron-intron	ENST00000597652	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597652	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597652	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597652	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000596604	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000596604	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000596604	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000596604	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597342	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597342	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597342	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597342	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597832	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597832	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597832	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597832	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000595295	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000595295	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000595295	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000595295	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000600634	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000600634	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000600634	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000600634	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000435989	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000435989	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000435989	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000435989	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597807	ENST00000368020		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597807	ENST00000368021		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597807	ENST00000435396		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-intron	ENST00000597807	ENST00000368019		ChiTaRS3.1			BF932409	ZNF814	chr19	58379610	-	USF1	chr1	161009971	+
intron-3UTR	ENST00000361937	ENST00000361937		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000361937	ENST00000401393		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-intron	ENST00000361937	ENST00000561244		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000401393	ENST00000361937		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000401393	ENST00000401393		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-intron	ENST00000401393	ENST00000561244		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000561244	ENST00000361937		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000561244	ENST00000401393		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-intron	ENST00000561244	ENST00000561244		ChiTaRS3.1			BU690049	INO80	chr15	41271229	+	INO80	chr15	41271381	-
intron-3UTR	ENST00000331925	ENST00000310074		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-intron	ENST00000331925	ENST00000512388		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000331925	ENST00000515646		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000573283	ENST00000310074		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-intron	ENST00000573283	ENST00000512388		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000573283	ENST00000515646		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000575842	ENST00000310074		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-intron	ENST00000575842	ENST00000512388		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000575842	ENST00000515646		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000575087	ENST00000310074		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-intron	ENST00000575087	ENST00000512388		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-3UTR	ENST00000575087	ENST00000515646		ChiTaRS3.1			BI040029	ACTG1	chr17	79479086	+	TADA2B	chr4	7057993	+
intron-intron	ENST00000418919	ENST00000400546		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000418919	ENST00000284894		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000418919	ENST00000535285		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000418919	ENST00000486367		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000258145	ENST00000400546		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000258145	ENST00000284894		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000258145	ENST00000535285		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000258145	ENST00000486367		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000543646	ENST00000400546		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000543646	ENST00000284894		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000543646	ENST00000535285		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000543646	ENST00000486367		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000542058	ENST00000400546		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000542058	ENST00000284894		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000542058	ENST00000535285		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000542058	ENST00000486367		ChiTaRS3.1			CA449339	GNS	chr12	65107664	+	NCAM2	chr21	22559273	-
intron-intron	ENST00000375190	ENST00000355312		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000356259		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000338373		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000360185		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000343646		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000354574		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000457474		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000361006		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000553118		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000551209		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000548655		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000547815		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000375190	ENST00000320063		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000355312		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000356259		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000338373		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000360185		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000343646		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000354574		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000457474		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000361006		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000553118		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000551209		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000548655		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000547815		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000589966	ENST00000320063		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000355312		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000356259		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000338373		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000360185		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000343646		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000354574		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000457474		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000361006		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000553118		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000551209		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000548655		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000547815		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000411851	ENST00000320063		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000355312		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000356259		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000338373		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000360185		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000343646		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000354574		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000457474		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000361006		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000553118		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000551209		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000548655		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000547815		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000587717	ENST00000320063		ChiTaRS3.1			BF056489	TBXA2R	chr19	3594728	+	GIT2	chr12	110401604	+
intron-intron	ENST00000263805	ENST00000337273		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000454282		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000447967		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000523768		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000513944		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000263805	ENST00000506351		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000337273		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000454282		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000447967		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000523768		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000513944		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565380	ENST00000506351		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000337273		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000454282		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000447967		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000523768		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000513944		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565611	ENST00000506351		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000337273		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000454282		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000447967		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000523768		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000513944		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
intron-intron	ENST00000565660	ENST00000506351		ChiTaRS3.1			BQ338569	ZNF106	chr15	42707674	-	TNPO1	chr5	72185092	+
5CDS-3UTR	ENST00000257189	ENST00000301923		ChiTaRS3.1			AW993609	DSG3	chr18	29049060	-	TNRC6B	chr22	40730496	-
5CDS-intron	ENST00000257189	ENST00000402203		ChiTaRS3.1			AW993609	DSG3	chr18	29049060	-	TNRC6B	chr22	40730496	-
5CDS-3UTR	ENST00000257189	ENST00000454349		ChiTaRS3.1			AW993609	DSG3	chr18	29049060	-	TNRC6B	chr22	40730496	-
5CDS-3UTR	ENST00000257189	ENST00000335727		ChiTaRS3.1			AW993609	DSG3	chr18	29049060	-	TNRC6B	chr22	40730496	-
5CDS-intron	ENST00000257189	ENST00000497559		ChiTaRS3.1			AW993609	DSG3	chr18	29049060	-	TNRC6B	chr22	40730496	-
In-frame	ENST00000219473	ENST00000219473		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
In-frame	ENST00000219473	ENST00000570191		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
5CDS-intron	ENST00000219473	ENST00000562743		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
In-frame	ENST00000570191	ENST00000219473		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
In-frame	ENST00000570191	ENST00000570191		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
5CDS-intron	ENST00000570191	ENST00000562743		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
intron-3CDS	ENST00000562743	ENST00000219473		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
intron-3CDS	ENST00000562743	ENST00000570191		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
intron-intron	ENST00000562743	ENST00000562743		ChiTaRS3.1			BE091809	USP10	chr16	84779098	+	USP10	chr16	84779062	-
intron-intron	ENST00000335681	ENST00000335681		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000335681	ENST00000542504		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000335681	ENST00000486017		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000542504	ENST00000335681		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000542504	ENST00000542504		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000542504	ENST00000486017		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000486017	ENST00000335681		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000486017	ENST00000542504		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-intron	ENST00000486017	ENST00000486017		ChiTaRS3.1			BQ365509	NPAS2	chr2	101486568	-	NPAS2	chr2	101493596	-
intron-3UTR	ENST00000311127	ENST00000313949		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371098		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000311127	ENST00000371075		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000311127	ENST00000371100		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371099		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371102		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000311127	ENST00000464624		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000306120		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371095		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371085		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000354359		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000265620		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000306090		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000311127	ENST00000371081		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000477536	ENST00000313949		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371098		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000477536	ENST00000371075		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000477536	ENST00000371100		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371099		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371102		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-3UTR	ENST00000477536	ENST00000464624		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000306120		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371095		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371085		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000354359		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000265620		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000306090		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000477536	ENST00000371081		ChiTaRS3.1			BF087649	HEG1	chr3	124756747	-	GNAS	chr20	57485060	-
intron-intron	ENST00000370951	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370951	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370951	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370951	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000405432	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000405432	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000405432	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000405432	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370950	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370950	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370950	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370950	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000454435	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000454435	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000454435	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000454435	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000436161	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000436161	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000436161	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000436161	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000484162	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000484162	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000484162	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000484162	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370949	ENST00000395146		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370949	ENST00000307808		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370949	ENST00000544085		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-intron	ENST00000370949	ENST00000511996		ChiTaRS3.1			BF369269	SRSF11	chr1	70714412	-	AFF1	chr4	87889839	-
intron-3CDS	ENST00000234195	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000234195	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000469469	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000469469	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000354545	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000354545	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000406384	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000406384	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000407257	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000407257	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000417700	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000417700	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000402091	ENST00000234195		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000469469		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000354545		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000406384		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000407257		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000417700		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000402091	ENST00000402091		ChiTaRS3.1			BQ375609	RMDN2	chr2	38230665	-	RMDN2	chr2	38231131	+
5CDS-intron	ENST00000331351	ENST00000550241		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
5CDS-intron	ENST00000331351	ENST00000602871		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
5CDS-intron	ENST00000331351	ENST00000394349		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
5CDS-intron	ENST00000331351	ENST00000549164		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
5CDS-intron	ENST00000331351	ENST00000338662		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000475436	ENST00000550241		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000475436	ENST00000602871		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000475436	ENST00000394349		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000475436	ENST00000549164		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000475436	ENST00000338662		ChiTaRS3.1			CX755679	HS3ST4	chr16	25704461	+	ATP5G2	chr12	54065762	-
intron-intron	ENST00000368346	ENST00000544604		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000368346	ENST00000332811		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000368346	ENST00000402174		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000368346	ENST00000406323		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000392403	ENST00000544604		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000392403	ENST00000332811		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000392403	ENST00000402174		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000392403	ENST00000406323		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000548830	ENST00000544604		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000548830	ENST00000332811		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000548830	ENST00000402174		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000548830	ENST00000406323		ChiTaRS3.1			BF093509	ASH1L	chr1	155352159	-	ZNRF3	chr22	29386506	+
intron-intron	ENST00000219837	ENST00000438132		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000542263		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000417362		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000251143		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000543152		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000448695		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000544275		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000538853		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000438132		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000542263		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000417362		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000251143		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000543152		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000448695		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000544275		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000538853		ChiTaRS3.1			BE552059	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
3UTR-intron	ENST00000560869	ENST00000377069		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000560869	ENST00000542973		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000560869	ENST00000377071		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000560869	ENST00000536437		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000560869	ENST00000538046		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000560869	ENST00000543852		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000377069		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000542973		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000377071		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000536437		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000538046		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000333007	ENST00000543852		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000377069		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000542973		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000377071		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000536437		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000538046		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000451723	ENST00000543852		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000377069		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000542973		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000377071		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000536437		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000538046		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-intron	ENST00000538222	ENST00000543852		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000377069		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000542973		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000377071		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000536437		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000538046		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
3UTR-intron	ENST00000561217	ENST00000543852		ChiTaRS3.1			AW594509	TNFAIP2	chr14	103603531	-	KDM2B	chr12	121933440	+
intron-3CDS	ENST00000265678	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000265678	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000265678	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000265678	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000265678	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000265678	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000265678	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000510118	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000510118	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000510118	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000510118	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000510118	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000510118	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000510118	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000503859	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000503859	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000503859	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000503859	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000503859	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000503859	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000503859	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000481261	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000481261	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000481261	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000481261	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000481261	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000481261	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000481261	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000405189	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000405189	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000405189	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000405189	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000405189	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000405189	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000405189	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000366863	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000366863	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000366863	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000366863	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000366863	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000366863	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000366863	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000509742	ENST00000265678		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000509742	ENST00000510118		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000509742	ENST00000503859		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000509742	ENST00000481261		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-3CDS	ENST00000509742	ENST00000405189		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000509742	ENST00000366863		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000509742	ENST00000509742		ChiTaRS3.1			BI011349	RPS6KA2	chr6	166843955	+	RPS6KA2	chr6	166844073	-
intron-intron	ENST00000505330	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000505330	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504381	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000507488	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000393221	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000533801	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000510168	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000508532	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000504948	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000513801	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000328560	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000428331	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000359644	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000422190	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000505330		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000504381		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000507488		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000393221		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000533801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000510168		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000508532		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000504948		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000513801		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000328560		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000428331		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000359644		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000422190		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
intron-intron	ENST00000509150	ENST00000509150		ChiTaRS3.1			CV320129	ATP2C1	chr3	130571328	+	ATP2C1	chr3	130571361	-
3UTR-5UTR	ENST00000284292	ENST00000340177		ChiTaRS3.1			AB045369	NRGN	chr11	124616515	+	HRH3	chr20	60795054	-
3UTR-5UTR	ENST00000284292	ENST00000317393		ChiTaRS3.1			AB045369	NRGN	chr11	124616515	+	HRH3	chr20	60795054	-
3UTR-5UTR	ENST00000412681	ENST00000340177		ChiTaRS3.1			AB045369	NRGN	chr11	124616515	+	HRH3	chr20	60795054	-
3UTR-5UTR	ENST00000412681	ENST00000317393		ChiTaRS3.1			AB045369	NRGN	chr11	124616515	+	HRH3	chr20	60795054	-
intron-intron	ENST00000567684	ENST00000567684		ChiTaRS3.1			BM783869	HSD11B2	chr16	67470872	-	HSD11B2	chr16	67470713	+
intron-intron	ENST00000567684	ENST00000326152		ChiTaRS3.1			BM783869	HSD11B2	chr16	67470872	-	HSD11B2	chr16	67470713	+
5CDS-intron	ENST00000326152	ENST00000567684		ChiTaRS3.1			BM783869	HSD11B2	chr16	67470872	-	HSD11B2	chr16	67470713	+
5CDS-intron	ENST00000326152	ENST00000326152		ChiTaRS3.1			BM783869	HSD11B2	chr16	67470872	-	HSD11B2	chr16	67470713	+
intron-intron	ENST00000411948	ENST00000411948		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000411948	ENST00000366528		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000411948	ENST00000498262		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000366528	ENST00000411948		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000366528	ENST00000366528		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000366528	ENST00000498262		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000498262	ENST00000411948		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000498262	ENST00000366528		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000498262	ENST00000498262		ChiTaRS3.1			DW440459	COX20	chr1	245005055	-	COX20	chr1	245006237	-
intron-intron	ENST00000297537	ENST00000334504		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000372216		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000394872		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000538570		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000545689		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000461897		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000297537	ENST00000418180		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000334504		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000372216		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000394872		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000538570		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000545689		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000461897		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000475831	ENST00000418180		ChiTaRS3.1			CR747029	GBX1	chr7	150845989	-	COL4A6	chrX	107666051	-
intron-intron	ENST00000379056	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379056	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379056	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379056	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379056	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379056	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000379056	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000529421	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000529421	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000529421	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000529421	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000529421	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000529421	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000529421	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000530705	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000530705	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000530705	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000530705	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000530705	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000530705	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000530705	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000379060	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379060	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379060	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379060	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379060	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379060	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000379060	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000379055	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379055	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379055	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379055	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379055	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000379055	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000379055	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000309246	ENST00000559935		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000309246	ENST00000559416		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000309246	ENST00000558813		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000309246	ENST00000331200		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000309246	ENST00000455976		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3UTR	ENST00000309246	ENST00000559540		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-intron	ENST00000309246	ENST00000561350		ChiTaRS3.1			BM090749	TPT1	chr13	45913712	-	DUT	chr15	48634286	+
intron-3CDS	ENST00000263733	ENST00000266754		ChiTaRS3.1			DN913449	FAM20B	chr1	178997678	-	GAS2L3	chr12	101018057	-
intron-3CDS	ENST00000263733	ENST00000547754		ChiTaRS3.1			DN913449	FAM20B	chr1	178997678	-	GAS2L3	chr12	101018057	-
intron-intron	ENST00000263733	ENST00000547739		ChiTaRS3.1			DN913449	FAM20B	chr1	178997678	-	GAS2L3	chr12	101018057	-
intron-intron	ENST00000263733	ENST00000539410		ChiTaRS3.1			DN913449	FAM20B	chr1	178997678	-	GAS2L3	chr12	101018057	-
intron-intron	ENST00000263733	ENST00000537247		ChiTaRS3.1			DN913449	FAM20B	chr1	178997678	-	GAS2L3	chr12	101018057	-
intron-3CDS	ENST00000343023	ENST00000343023		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000343023	ENST00000354230		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000343023	ENST00000303887		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000354230	ENST00000343023		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000354230	ENST00000354230		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000354230	ENST00000303887		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000303887	ENST00000343023		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000303887	ENST00000354230		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-3CDS	ENST00000303887	ENST00000303887		ChiTaRS3.1			T12299	MCM7	chr7	99695815	-	MCM7	chr7	99695872	+
intron-intron	ENST00000409236	ENST00000394609		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000405240		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000357376		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000317610		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000357732		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000337526		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000394611		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000404909		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000486085		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000354474		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409236	ENST00000402434		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000394609		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000405240		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000357376		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000317610		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000357732		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000337526		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000394611		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000404909		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000486085		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000354474		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000356421	ENST00000402434		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000394609		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000405240		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000357376		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000317610		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000357732		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000337526		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000394611		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000404909		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000486085		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000354474		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000317233	ENST00000402434		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000394609		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000405240		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000357376		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000317610		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000357732		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000337526		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000394611		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000404909		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000486085		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000354474		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000409579	ENST00000402434		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000394609		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000405240		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000357376		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000317610		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000357732		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000337526		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000394611		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000404909		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000486085		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000354474		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
intron-intron	ENST00000483600	ENST00000402434		ChiTaRS3.1			T06959	AFF3	chr2	100163863	+	RTN4	chr2	55252550	+
5CDS-intron	ENST00000286067	ENST00000260502		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
5CDS-intron	ENST00000286067	ENST00000370244		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
5CDS-intron	ENST00000286067	ENST00000370243		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
5CDS-intron	ENST00000286067	ENST00000370247		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
5CDS-intron	ENST00000286067	ENST00000539242		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
5CDS-intron	ENST00000286067	ENST00000466632		ChiTaRS3.1			BF992779	C10orf12	chr10	98744075	-	BCAR3	chr1	94070794	-
intron-3UTR	ENST00000310441	ENST00000310441		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000310441	ENST00000369984		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000310441	ENST00000354233		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-intron	ENST00000310441	ENST00000461098		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000369984	ENST00000310441		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000369984	ENST00000369984		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000369984	ENST00000354233		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-intron	ENST00000369984	ENST00000461098		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000354233	ENST00000310441		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000354233	ENST00000369984		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000354233	ENST00000354233		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-intron	ENST00000354233	ENST00000461098		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000461098	ENST00000310441		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000461098	ENST00000369984		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-3UTR	ENST00000461098	ENST00000354233		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-intron	ENST00000461098	ENST00000461098		ChiTaRS3.1			BQ232509	HCFC1	chrX	153214500	-	HCFC1	chrX	153214565	+
intron-intron	ENST00000554335	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000554335	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000554335	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000554335		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000251091		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000555112		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000392067		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000357634		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000555192		ChiTaRS3.1			BC011489	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3CDS	ENST00000559935	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000559935	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000559935	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000559935	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000559935	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000559935	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3UTR	ENST00000559935	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559416	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3UTR	ENST00000559416	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000558813	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3UTR	ENST00000558813	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000331200	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3UTR	ENST00000331200	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000455976	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3UTR	ENST00000455976	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3CDS	ENST00000559540	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
3UTR-3UTR	ENST00000559540	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000559935		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000559416		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000558813		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000331200		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000455976		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3CDS	ENST00000561350	ENST00000559540		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-3UTR	ENST00000561350	ENST00000561350		ChiTaRS3.1			CB853769	DUT	chr15	48634283	-	DUT	chr15	48628256	+
intron-intron	ENST00000302035	ENST00000407071		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000302035	ENST00000366518		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000302035	ENST00000479506		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000235739	ENST00000407071		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000235739	ENST00000366518		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000235739	ENST00000479506		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000538290	ENST00000407071		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000538290	ENST00000366518		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000538290	ENST00000479506		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000355199	ENST00000407071		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000355199	ENST00000366518		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000355199	ENST00000479506		ChiTaRS3.1			U21469	SLAMF1	chr1	160605620	-	KIF26B	chr1	245583590	-
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			BQ130239	MEG3	chr14	101302125	-	MEG3	chr14	101302553	+
3UTR-intron	ENST00000398606	ENST00000265715		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
3UTR-intron	ENST00000398606	ENST00000541474		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
3UTR-intron	ENST00000398606	ENST00000544569		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
3UTR-intron	ENST00000398606	ENST00000543100		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
3UTR-intron	ENST00000398606	ENST00000480841		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
5CDS-intron	ENST00000398603	ENST00000265715		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
5CDS-intron	ENST00000398603	ENST00000541474		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
5CDS-intron	ENST00000398603	ENST00000544569		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
5CDS-intron	ENST00000398603	ENST00000543100		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
5CDS-intron	ENST00000398603	ENST00000480841		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-intron	ENST00000498765	ENST00000265715		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-intron	ENST00000498765	ENST00000541474		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-intron	ENST00000498765	ENST00000544569		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-intron	ENST00000498765	ENST00000543100		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-intron	ENST00000498765	ENST00000480841		ChiTaRS3.1			BU527119	GSTP1	chr11	67354124	+	SLC26A4	chr7	107322541	+
intron-3CDS	ENST00000375300	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000375300	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000375300	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000292055	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000292055	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000292055	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000375288	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000375288	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000375288	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000434315	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000434315	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000434315	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000542607	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000542607	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000542607	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000446921	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000446921	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000446921	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-3CDS	ENST00000488337	ENST00000406386		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000488337	ENST00000407319		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000488337	ENST00000403663		ChiTaRS3.1			AB051449	SIK3	chr11	116925886	-	TRIOBP	chr22	38120720	+
intron-intron	ENST00000505731	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000505731	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507999	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512712	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000515194	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000503709	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000507702	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000550418		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000553186		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000547372		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000422070		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000535565		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000547427		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000552089		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000547338		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000436368		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000311745		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000355637		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000512802	ENST00000340209		ChiTaRS3.1			L34409	NOP14-AS1	chr4	2960811	+	RBFOX1	chr16	7241413	+
intron-intron	ENST00000511250	ENST00000511250		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
intron-3UTR	ENST00000511250	ENST00000308497		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
intron-intron	ENST00000511250	ENST00000438269		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
3UTR-intron	ENST00000308497	ENST00000511250		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
3UTR-3UTR	ENST00000308497	ENST00000308497		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
3UTR-intron	ENST00000308497	ENST00000438269		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
intron-intron	ENST00000438269	ENST00000511250		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
intron-3UTR	ENST00000438269	ENST00000308497		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
intron-intron	ENST00000438269	ENST00000438269		ChiTaRS3.1			BQ366099	STOX2	chr4	184944100	-	STOX2	chr4	184943908	+
3UTR-3UTR	ENST00000338702	ENST00000338702		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
3UTR-intron	ENST00000338702	ENST00000542639		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
3UTR-intron	ENST00000338702	ENST00000497485		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-3UTR	ENST00000542639	ENST00000338702		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-intron	ENST00000542639	ENST00000542639		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-intron	ENST00000542639	ENST00000497485		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-3UTR	ENST00000497485	ENST00000338702		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-intron	ENST00000497485	ENST00000542639		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
intron-intron	ENST00000497485	ENST00000497485		ChiTaRS3.1			CB242049	MAOA	chrX	43605928	-	MAOA	chrX	43605751	+
5CDS-intron	ENST00000442011	ENST00000427662		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000442011	ENST00000369774		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000442011	ENST00000355946		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000442011	ENST00000315994		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000442011	ENST00000540321		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000442011	ENST00000538130		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000427662		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000369774		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000355946		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000315994		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000540321		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5CDS-intron	ENST00000305126	ENST00000538130		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000427662		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000369774		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000355946		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000315994		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000540321		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
5UTR-intron	ENST00000508076	ENST00000538130		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000427662		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000369774		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000355946		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000315994		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000540321		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000504185	ENST00000538130		ChiTaRS3.1			AA367699	TGFBI	chr5	135394815	-	SH3PXD2A	chr10	105402491	-
intron-intron	ENST00000309352	ENST00000309352		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000309352	ENST00000409963		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000309352	ENST00000585475		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000409963	ENST00000309352		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000409963	ENST00000409963		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000409963	ENST00000585475		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000585475	ENST00000309352		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000585475	ENST00000409963		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-intron	ENST00000585475	ENST00000585475		ChiTaRS3.1			BG984019	MRPL38	chr17	73895509	-	MRPL38	chr17	73896340	-
intron-3UTR	ENST00000607016	ENST00000541478		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000535715		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000422031		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000428192		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-3UTR	ENST00000607016	ENST00000538426		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000543004		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000536443		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000607016	ENST00000543988		ChiTaRS3.1			W94359	NUDT3	chr6	34252384	+	OTUB1	chr11	63765826	-
intron-intron	ENST00000567004	ENST00000378707		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000359836		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000541735		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000343523		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000378677		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000357033		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000474231		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000378723		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000378702		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000361471		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000378680		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000288447		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000567004	ENST00000445312		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000378707		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000359836		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000541735		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000343523		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000378677		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000357033		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000474231		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000378723		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000378702		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000361471		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000378680		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000288447		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000542527	ENST00000445312		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000378707		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000359836		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000541735		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000343523		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000378677		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000357033		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000474231		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000378723		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000378702		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000361471		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000378680		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000288447		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000569656	ENST00000445312		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000378707		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000359836		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000541735		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000343523		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000378677		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000357033		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000474231		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000378723		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000378702		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000361471		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000378680		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000288447		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000562695	ENST00000445312		ChiTaRS3.1			AW800789	C16orf52	chr16	22073163	+	DMD	chrX	32614077	+
intron-intron	ENST00000553127	ENST00000380516		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000553127	ENST00000536328		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000553127	ENST00000557950		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000321898	ENST00000380516		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000321898	ENST00000536328		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000321898	ENST00000557950		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552918	ENST00000380516		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552918	ENST00000536328		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552918	ENST00000557950		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000547865	ENST00000380516		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000547865	ENST00000536328		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000547865	ENST00000557950		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552557	ENST00000380516		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552557	ENST00000536328		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-intron	ENST00000552557	ENST00000557950		ChiTaRS3.1			BG994059	SPATS2	chr12	49778098	-	SLTM	chr15	59204158	+
intron-3UTR	ENST00000357166	ENST00000357166		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000357166	ENST00000371064		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000357166	ENST00000491039		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-3UTR	ENST00000371064	ENST00000357166		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000371064	ENST00000371064		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000371064	ENST00000491039		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-3UTR	ENST00000491039	ENST00000357166		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000491039	ENST00000371064		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-intron	ENST00000491039	ENST00000491039		ChiTaRS3.1			BF814719	ZDHHC9	chrX	128939944	+	ZDHHC9	chrX	128939212	-
intron-3CDS	ENST00000393445	ENST00000216554		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-3CDS	ENST00000393445	ENST00000558506		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-intron	ENST00000393445	ENST00000560200		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-intron	ENST00000393445	ENST00000392715		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-3CDS	ENST00000258428	ENST00000216554		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-3CDS	ENST00000258428	ENST00000558506		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-intron	ENST00000258428	ENST00000560200		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-intron	ENST00000258428	ENST00000392715		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
Frame-shit	ENST00000465835	ENST00000216554		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
Frame-shit	ENST00000465835	ENST00000558506		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
5CDS-intron	ENST00000465835	ENST00000560200		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
5CDS-intron	ENST00000465835	ENST00000392715		ChiTaRS3.1			BM833559	REV1	chr2	100019515	-	EIF5	chr14	103804688	+
intron-intron	ENST00000487694	ENST00000570010		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000563356		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000568079		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000464850		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000332307		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000393430		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000487694	ENST00000567481		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000570010		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000563356		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000568079		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000464850		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000332307		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000393430		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000461745	ENST00000567481		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000570010		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000563356		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000568079		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000464850		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000332307		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000393430		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000332191	ENST00000567481		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000570010		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000563356		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000568079		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000464850		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000332307		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000393430		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-intron	ENST00000469233	ENST00000567481		ChiTaRS3.1			BM720689	ROBO2	chr3	77198182	+	ZFP1	chr16	75185016	+
intron-3CDS	ENST00000499869	ENST00000499869		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000499869	ENST00000382451		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000499869	ENST00000382452		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000499869	ENST00000515743		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000499869	ENST00000502702		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382451	ENST00000499869		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382451	ENST00000382451		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382451	ENST00000382452		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000382451	ENST00000515743		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000382451	ENST00000502702		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382452	ENST00000499869		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382452	ENST00000382451		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000382452	ENST00000382452		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000382452	ENST00000515743		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000382452	ENST00000502702		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000515743	ENST00000499869		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000515743	ENST00000382451		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000515743	ENST00000382452		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000515743	ENST00000515743		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000515743	ENST00000502702		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000502702	ENST00000499869		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000502702	ENST00000382451		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-3CDS	ENST00000502702	ENST00000382452		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000502702	ENST00000515743		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
intron-5UTR	ENST00000502702	ENST00000502702		ChiTaRS3.1			BF766339	WDR1	chr4	10089979	-	WDR1	chr4	10089393	+
In-frame	ENST00000357395	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000357395	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000357395	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000357395	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000357395	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000357395	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000357395	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000358025	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000358025	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000358025	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000358025	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000358025	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000358025	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000358025	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000344113	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000344113	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000344113	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000344113	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000344113	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000344113	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000344113	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000341472	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000341472	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000341472	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000341472	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000341472	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000341472	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000341472	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000356081	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000356081	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000356081	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000356081	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000356081	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000356081	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000356081	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000554584	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000554584	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554584	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554584	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554584	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554584	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554584	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000555002	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000555002	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555002	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555002	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555002	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555002	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555002	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000394768	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000394768	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000394768	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000394768	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000394768	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000394768	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000394768	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000556725	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000556725	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000556725	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000556725	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000556725	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000556725	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000556725	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000553455	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-3CDS	ENST00000553455	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000553455	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000553455	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000553455	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000553455	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
intron-intron	ENST00000553455	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000555022	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000555022	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555022	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555022	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555022	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555022	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000555022	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000554805	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000554805	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554805	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554805	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554805	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554805	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000554805	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000458046	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
In-frame	ENST00000458046	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000458046	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000458046	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000458046	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000458046	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000458046	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000441438	ENST00000258381		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
Frame-shit	ENST00000441438	ENST00000358662		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000441438	ENST00000392048		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000441438	ENST00000258382		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000441438	ENST00000540870		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000441438	ENST00000338556		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
5CDS-intron	ENST00000441438	ENST00000486146		ChiTaRS3.1			DW009759	SYNE2	chr14	64692228	+	SP110	chr2	231037638	+
3UTR-3CDS	ENST00000515359	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525071		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000429869		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525815		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000265836		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000375682		ChiTaRS3.1			AW235149	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000534336	ENST00000393561		ChiTaRS3.1			BE775149	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-3CDS	ENST00000534336	ENST00000222399		ChiTaRS3.1			BE775149	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000393560		ChiTaRS3.1			BE775149	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
3UTR-intron	ENST00000534336	ENST00000474380		ChiTaRS3.1			BE775149	MALAT1	chr11	65267452	-	LAMB1	chr7	107564465	+
intron-3UTR	ENST00000409979	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000409979	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
3UTR-3UTR	ENST00000310078	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
3UTR-3UTR	ENST00000310078	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
3UTR-3UTR	ENST00000409315	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
3UTR-3UTR	ENST00000409315	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000373671	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000373671	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000409171	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000409171	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000486932	ENST00000223095		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-3UTR	ENST00000486932	ENST00000445463		ChiTaRS3.1			BI793049	AGFG1	chr2	228419793	-	SERPINE1	chr7	100780813	+
intron-intron	ENST00000316286	ENST00000316286		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000316286	ENST00000491431		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000316286	ENST00000451334		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000491431	ENST00000316286		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000491431	ENST00000491431		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000491431	ENST00000451334		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000451334	ENST00000316286		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000451334	ENST00000491431		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
intron-intron	ENST00000451334	ENST00000451334		ChiTaRS3.1			DA571889	ZNF786	chr7	148772251	-	ZNF786	chr7	148774443	-
3UTR-intron	ENST00000532456	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
3UTR-intron	ENST00000532456	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
3UTR-intron	ENST00000532456	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000539648	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000539648	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000539648	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000528499	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000528499	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000528499	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000263574	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000263574	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000263574	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000345598	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000345598	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000345598	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000338167	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000338167	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000338167	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000278756	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000278756	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000278756	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000543137	ENST00000513488		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000543137	ENST00000362063		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
intron-intron	ENST00000543137	ENST00000430262		ChiTaRS3.1			AI985209	APLP2	chr11	129939782	-	ZNF652	chr17	47367249	-
3UTR-3CDS	ENST00000264444	ENST00000280571		ChiTaRS3.1			BQ362049	MXD1	chr2	70167394	-	RILPL2	chr12	123915148	-
intron-3CDS	ENST00000540449	ENST00000280571		ChiTaRS3.1			BQ362049	MXD1	chr2	70167394	-	RILPL2	chr12	123915148	-
intron-3CDS	ENST00000465446	ENST00000280571		ChiTaRS3.1			BQ362049	MXD1	chr2	70167394	-	RILPL2	chr12	123915148	-
intron-intron	ENST00000301905	ENST00000467100		ChiTaRS3.1			AA830169	PBK	chr8	27684873	+	FUBP3	chr9	133481145	-
intron-intron	ENST00000301905	ENST00000319725		ChiTaRS3.1			AA830169	PBK	chr8	27684873	+	FUBP3	chr9	133481145	-
intron-intron	ENST00000522944	ENST00000467100		ChiTaRS3.1			AA830169	PBK	chr8	27684873	+	FUBP3	chr9	133481145	-
intron-intron	ENST00000522944	ENST00000319725		ChiTaRS3.1			AA830169	PBK	chr8	27684873	+	FUBP3	chr9	133481145	-
5CDS-5UTR	ENST00000301455	ENST00000344063		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000301455	ENST00000431533		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000301455	ENST00000428193		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000301455	ENST00000558815		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000301455	ENST00000560583		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000301455	ENST00000560055		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000301455	ENST00000559463		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000301455	ENST00000558131		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000301455	ENST00000558752		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000301455	ENST00000458349		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000344063		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000431533		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000428193		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000558815		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000560583		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000541807	ENST00000560055		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000541807	ENST00000559463		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000541807	ENST00000558131		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000541807	ENST00000558752		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000541807	ENST00000458349		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000344063		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000431533		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000428193		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000558815		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000560583		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-5UTR	ENST00000393962	ENST00000560055		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000393962	ENST00000559463		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000393962	ENST00000558131		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000393962	ENST00000558752		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
5CDS-intron	ENST00000393962	ENST00000458349		ChiTaRS3.1			BU543829	ANGPTL4	chr19	8436347	-	RPL28	chr19	55897312	+
intron-intron	ENST00000389757	ENST00000372236		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000389757	ENST00000535400		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000389757	ENST00000372226		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000389759	ENST00000372236		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000389759	ENST00000535400		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000389759	ENST00000372226		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000495123	ENST00000372236		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000495123	ENST00000535400		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-intron	ENST00000495123	ENST00000372226		ChiTaRS3.1			DB510499	PKP4	chr2	159471694	-	POLH	chr6	43549827	+
intron-3UTR	ENST00000374866	ENST00000374866		ChiTaRS3.1			AI752199	COL5A2	chr2	189898585	+	COL5A2	chr2	189898477	-
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY282402	MLLT3	chr9	20410548	-	KMT2A	chr11	118359129	+
intron-intron	ENST00000354532	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000354532	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000599846	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000596957	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000347545	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000378152	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000379261		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000416382		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000450189		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000542579		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000399850		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000417956		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000354440		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000427450		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000315874		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000608830		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000609692		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000354897		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000337665	ENST00000537122		ChiTaRS3.1			BF359809	ARHGEF1	chr19	42389292	+	CELF2	chr10	11369186	-
intron-intron	ENST00000309364	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000309364	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000359180	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000317589	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000355397	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000429027	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000539256	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000299275	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000538714	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000543806	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
3UTR-intron	ENST00000424268	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000540972	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000309364		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000359180		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000317589		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000355397		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000429027		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000539256		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000299275		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000538714		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000543806		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000424268		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000540972		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000510738	ENST00000510738		ChiTaRS3.1			BU677399	PLEKHA5	chr12	19528867	-	PLEKHA5	chr12	19514602	+
intron-intron	ENST00000255266	ENST00000255266		ChiTaRS3.1			BQ638079	PDE6A	chr5	149284906	-	PDE6A	chr5	149285286	-
intron-3UTR	ENST00000267889	ENST00000303575		ChiTaRS3.1			AK026919	DISP2	chr15	40663520	+	TMED10	chr14	75598857	-
intron-intron	ENST00000267889	ENST00000557670		ChiTaRS3.1			AK026919	DISP2	chr15	40663520	+	TMED10	chr14	75598857	-
Frame-shit	ENST00000355899	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000355899	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000355899	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000355899	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000355899	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000537301	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000537301	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000537301	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000537301	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000537301	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000289290	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000289290	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000289290	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000289290	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000289290	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000420625	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000420625	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000420625	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000420625	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000420625	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000539310	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000539310	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000539310	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000539310	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
Frame-shit	ENST00000539310	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-3CDS	ENST00000543070	ENST00000380406		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-3CDS	ENST00000543070	ENST00000380405		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-3CDS	ENST00000543070	ENST00000320027		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-3CDS	ENST00000543070	ENST00000445273		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-3CDS	ENST00000543070	ENST00000429785		ChiTaRS3.1			BQ300629	PLS3	chrX	114871171	-	HSPH1	chr13	31722190	-
intron-intron	ENST00000389817	ENST00000389817		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000389817	ENST00000302539		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000389817	ENST00000528202		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000302539	ENST00000389817		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000302539	ENST00000302539		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000302539	ENST00000528202		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000528202	ENST00000389817		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000528202	ENST00000302539		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-intron	ENST00000528202	ENST00000528202		ChiTaRS3.1			BF224199	ABCC8	chr11	17417185	-	ABCC8	chr11	17418734	-
intron-3CDS	ENST00000330722	ENST00000330722		ChiTaRS3.1			BE182989	KRT6A	chr12	52882134	+	KRT6A	chr12	52881537	-
intron-intron	ENST00000238789	ENST00000327381		ChiTaRS3.1			DB326239	ATAD2B	chr2	23971975	+	XKR4	chr8	56034037	-
intron-intron	ENST00000238789	ENST00000518261		ChiTaRS3.1			DB326239	ATAD2B	chr2	23971975	+	XKR4	chr8	56034037	-
intron-intron	ENST00000474583	ENST00000327381		ChiTaRS3.1			DB326239	ATAD2B	chr2	23971975	+	XKR4	chr8	56034037	-
intron-intron	ENST00000474583	ENST00000518261		ChiTaRS3.1			DB326239	ATAD2B	chr2	23971975	+	XKR4	chr8	56034037	-
intron-3CDS	ENST00000253023	ENST00000528838		ChiTaRS3.1			AA480819	UBE2M	chr19	59067411	+	HSF1	chr8	145535670	-
intron-3CDS	ENST00000253023	ENST00000400780		ChiTaRS3.1			AA480819	UBE2M	chr19	59067411	+	HSF1	chr8	145535670	-
intron-intron	ENST00000253023	ENST00000528842		ChiTaRS3.1			AA480819	UBE2M	chr19	59067411	+	HSF1	chr8	145535670	-
3UTR-intron	ENST00000341529	ENST00000327921		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000262233		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000334192		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
3UTR-intron	ENST00000341529	ENST00000556758		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000327921		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000262233		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000334192		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000563425	ENST00000556758		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000327921		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000262233		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000334192		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-intron	ENST00000539168	ENST00000556758		ChiTaRS3.1			BG005249	CDH5	chr16	66437470	-	EML1	chr14	100295543	+
intron-3CDS	ENST00000356761	ENST00000356761		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000356761	ENST00000299397		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000356761	ENST00000342245		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000356761	ENST00000533196		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000356761	ENST00000527275		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000299397	ENST00000356761		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000299397	ENST00000299397		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000299397	ENST00000342245		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000299397	ENST00000533196		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000299397	ENST00000527275		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000342245	ENST00000356761		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000342245	ENST00000299397		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000342245	ENST00000342245		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
5CDS-intron	ENST00000342245	ENST00000533196		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
5CDS-intron	ENST00000342245	ENST00000527275		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000533196	ENST00000356761		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000533196	ENST00000299397		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3CDS	ENST00000533196	ENST00000342245		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000533196	ENST00000533196		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-intron	ENST00000533196	ENST00000527275		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000527275	ENST00000356761		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000527275	ENST00000299397		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
Frame-shit	ENST00000527275	ENST00000342245		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
5CDS-intron	ENST00000527275	ENST00000533196		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
5CDS-intron	ENST00000527275	ENST00000527275		ChiTaRS3.1			BF853689	SMPD1	chr11	6414495	-	SMPD1	chr11	6415198	+
intron-3UTR	ENST00000345097	ENST00000377795		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000345097	ENST00000353334		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000345097	ENST00000524315		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000345097	ENST00000009530		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000261302	ENST00000377795		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000261302	ENST00000353334		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000261302	ENST00000524315		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000261302	ENST00000009530		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000557258	ENST00000377795		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000557258	ENST00000353334		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000557258	ENST00000524315		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000557258	ENST00000009530		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000555353	ENST00000377795		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000555353	ENST00000353334		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000555353	ENST00000524315		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000555353	ENST00000009530		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000555658	ENST00000377795		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-3UTR	ENST00000555658	ENST00000353334		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000555658	ENST00000524315		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000555658	ENST00000009530		ChiTaRS3.1			BG272929	FOXN3	chr14	90066669	+	CD74	chr5	149781809	-
intron-intron	ENST00000216037	ENST00000540235		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000216037	ENST00000393930		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000216037	ENST00000393931		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000216037	ENST00000310706		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000403532	ENST00000540235		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000403532	ENST00000393930		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000403532	ENST00000393931		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000403532	ENST00000310706		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000405219	ENST00000540235		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000405219	ENST00000393930		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000405219	ENST00000393931		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000405219	ENST00000310706		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000344347	ENST00000540235		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000344347	ENST00000393930		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000344347	ENST00000393931		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-intron	ENST00000344347	ENST00000310706		ChiTaRS3.1			BM807369	XBP1	chr22	29196445	-	JUP	chr17	39780752	-
intron-3UTR	ENST00000580170	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3UTR	ENST00000332175	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3UTR	ENST00000400060	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3UTR	ENST00000400053	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3UTR	ENST00000444013	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3UTR	ENST00000578571	ENST00000409262		ChiTaRS3.1			BF331499	PTPRM	chr18	7706931	+	TET3	chr2	74334655	+
intron-3CDS	ENST00000305747	ENST00000375400		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-3CDS	ENST00000305747	ENST00000375398		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-3CDS	ENST00000305747	ENST00000355867		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000305747	ENST00000535393		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000305747	ENST00000460007		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000305747	ENST00000538146		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-3CDS	ENST00000392687	ENST00000375400		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-3CDS	ENST00000392687	ENST00000375398		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-3CDS	ENST00000392687	ENST00000355867		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000392687	ENST00000535393		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000392687	ENST00000460007		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000392687	ENST00000538146		ChiTaRS3.1			BI050759	CERS6	chr2	169326774	-	SVIL	chr10	29839535	+
intron-intron	ENST00000504734	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
intron-intron	ENST00000415618	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
3UTR-intron	ENST00000452673	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
3UTR-intron	ENST00000247461	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
intron-intron	ENST00000512607	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
intron-intron	ENST00000503126	ENST00000364938		ChiTaRS3.1			AU125279	CANX	chr5	179157013	+	SNHG3	chr1	28833820	+
intron-intron	ENST00000367657	ENST00000367657		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367657	ENST00000361833		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367657	ENST00000367654		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367657	ENST00000424564		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367657	ENST00000281881		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000361833	ENST00000367657		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000361833	ENST00000361833		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000361833	ENST00000367654		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000361833	ENST00000424564		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000361833	ENST00000281881		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367654	ENST00000367657		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367654	ENST00000361833		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367654	ENST00000367654		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367654	ENST00000424564		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000367654	ENST00000281881		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000424564	ENST00000367657		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000424564	ENST00000361833		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000424564	ENST00000367654		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000424564	ENST00000424564		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000424564	ENST00000281881		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000281881	ENST00000367657		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000281881	ENST00000361833		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000281881	ENST00000367654		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000281881	ENST00000424564		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000281881	ENST00000281881		ChiTaRS3.1			AV701799	ASTN1	chr1	177030975	-	ASTN1	chr1	177081221	-
intron-intron	ENST00000400521	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400521	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400519	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000535882	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000334363	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000400518	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000542719	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000341329		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000392062		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000409053		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000491939	ENST00000493526		ChiTaRS3.1			AI559179	TXNRD2	chr22	19882248	+	RHBDD1	chr2	227719026	-
intron-intron	ENST00000376395	ENST00000376395		ChiTaRS3.1			BF809109	UBQLN1	chr9	86293515	+	UBQLN1	chr9	86279945	+
intron-intron	ENST00000376395	ENST00000257468		ChiTaRS3.1			BF809109	UBQLN1	chr9	86293515	+	UBQLN1	chr9	86279945	+
intron-intron	ENST00000257468	ENST00000376395		ChiTaRS3.1			BF809109	UBQLN1	chr9	86293515	+	UBQLN1	chr9	86279945	+
intron-intron	ENST00000257468	ENST00000257468		ChiTaRS3.1			BF809109	UBQLN1	chr9	86293515	+	UBQLN1	chr9	86279945	+
intron-intron	ENST00000382496	ENST00000410107		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
intron-intron	ENST00000382496	ENST00000397423		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
intron-intron	ENST00000382496	ENST00000495262		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
intron-intron	ENST00000382496	ENST00000379597		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
intron-intron	ENST00000382496	ENST00000316170		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
intron-intron	ENST00000382496	ENST00000265012		ChiTaRS3.1			AA553879	SEMA5A	chr5	9427413	-	GCNT2	chr6	10590710	-
3UTR-5UTR	ENST00000469172	ENST00000266544		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
3UTR-5UTR	ENST00000469172	ENST00000542369		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
3UTR-intron	ENST00000469172	ENST00000540688		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000265866	ENST00000266544		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000265866	ENST00000542369		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-intron	ENST00000265866	ENST00000540688		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000441000	ENST00000266544		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000441000	ENST00000542369		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-intron	ENST00000441000	ENST00000540688		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000354695	ENST00000266544		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-5UTR	ENST00000354695	ENST00000542369		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
5CDS-intron	ENST00000354695	ENST00000540688		ChiTaRS3.1			AU142559	HNRNPH3	chr10	70101430	+	NDUFA9	chr12	4758280	+
3UTR-intron	ENST00000370256	ENST00000389413		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370256	ENST00000409483		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370256	ENST00000389416		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370256	ENST00000389418		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370256	ENST00000404321		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000260506	ENST00000389413		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000260506	ENST00000409483		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000260506	ENST00000389416		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000260506	ENST00000389418		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000260506	ENST00000404321		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000271234	ENST00000389413		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000271234	ENST00000409483		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000271234	ENST00000389416		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000271234	ENST00000389418		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000271234	ENST00000404321		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
intron-intron	ENST00000604705	ENST00000389413		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
intron-intron	ENST00000604705	ENST00000409483		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
intron-intron	ENST00000604705	ENST00000389416		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
intron-intron	ENST00000604705	ENST00000389418		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
intron-intron	ENST00000604705	ENST00000404321		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370253	ENST00000389413		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370253	ENST00000409483		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370253	ENST00000389416		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370253	ENST00000389418		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-intron	ENST00000370253	ENST00000404321		ChiTaRS3.1			BE927699	FNBP1L	chr1	94019054	+	PTPRN2	chr7	158256606	+
3UTR-3UTR	ENST00000211314	ENST00000211314		ChiTaRS3.1			AA483659	TMEM14A	chr6	52551374	+	TMEM14A	chr6	52551245	-
intron-intron	ENST00000206451	ENST00000404984		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000206451	ENST00000402050		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000206451	ENST00000438376		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000206451	ENST00000325979		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000206451	ENST00000497572		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000559123	ENST00000404984		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000559123	ENST00000402050		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000559123	ENST00000438376		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000559123	ENST00000325979		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000559123	ENST00000497572		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000382708	ENST00000404984		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000382708	ENST00000402050		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000382708	ENST00000438376		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000382708	ENST00000325979		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000382708	ENST00000497572		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000561435	ENST00000404984		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000561435	ENST00000402050		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000561435	ENST00000438376		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000561435	ENST00000325979		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000561435	ENST00000497572		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000470718	ENST00000404984		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000470718	ENST00000402050		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000470718	ENST00000438376		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000470718	ENST00000325979		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-intron	ENST00000470718	ENST00000497572		ChiTaRS3.1			BM990679	PSME1	chr14	24607403	-	IQCE	chr7	2647130	+
intron-3CDS	ENST00000229329	ENST00000229329		ChiTaRS3.1			BX106129	CMAS	chr12	22216717	-	CMAS	chr12	22218055	+
5CDS-3UTR	ENST00000250092	ENST00000373212		ChiTaRS3.1			BP305239	CD68	chr17	7483365	+	SH3BGRL	chrX	80553880	+
5CDS-intron	ENST00000250092	ENST00000481106		ChiTaRS3.1			BP305239	CD68	chr17	7483365	+	SH3BGRL	chrX	80553880	+
5CDS-3UTR	ENST00000380498	ENST00000373212		ChiTaRS3.1			BP305239	CD68	chr17	7483365	+	SH3BGRL	chrX	80553880	+
5CDS-intron	ENST00000380498	ENST00000481106		ChiTaRS3.1			BP305239	CD68	chr17	7483365	+	SH3BGRL	chrX	80553880	+
intron-3CDS	ENST00000331351	ENST00000305885		ChiTaRS3.1			BC019599	HS3ST4	chr16	26043662	+	FEN1	chr11	61563094	+
intron-3CDS	ENST00000475436	ENST00000305885		ChiTaRS3.1			BC019599	HS3ST4	chr16	26043662	+	FEN1	chr11	61563094	+
intron-3CDS	ENST00000252050	ENST00000413702		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000252050	ENST00000456088		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000252050	ENST00000304887		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3UTR	ENST00000252050	ENST00000514512		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000354495	ENST00000413702		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000354495	ENST00000456088		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000354495	ENST00000304887		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3UTR	ENST00000354495	ENST00000514512		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000372647	ENST00000413702		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000372647	ENST00000456088		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000372647	ENST00000304887		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3UTR	ENST00000372647	ENST00000514512		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000502937	ENST00000413702		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000502937	ENST00000456088		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3CDS	ENST00000502937	ENST00000304887		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-3UTR	ENST00000502937	ENST00000514512		ChiTaRS3.1			BX537739	CUL9	chr6	43150467	+	MUC7	chr4	71346688	+
intron-intron	ENST00000330387	ENST00000395833		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000330387	ENST00000257818		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000330387	ENST00000493667		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000456390	ENST00000395833		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000456390	ENST00000257818		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000456390	ENST00000493667		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000452463	ENST00000395833		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000452463	ENST00000257818		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000452463	ENST00000493667		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000458726	ENST00000395833		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000458726	ENST00000257818		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000458726	ENST00000493667		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000468127	ENST00000395833		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000468127	ENST00000257818		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
intron-intron	ENST00000468127	ENST00000493667		ChiTaRS3.1			BI028029	CREB3L2	chr7	137564579	-	LMO2	chr11	33899752	+
Frame-shit	ENST00000534358	ENST00000534358		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000389506		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000534358	ENST00000354520		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000534358	ENST00000420751		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000534358		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000389506		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
Frame-shit	ENST00000389506	ENST00000354520		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
5CDS-intron	ENST00000389506	ENST00000420751		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000354520	ENST00000534358		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000354520	ENST00000389506		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000354520	ENST00000354520		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000354520	ENST00000420751		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000534358		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000389506		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000420751	ENST00000354520		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-intron	ENST00000420751	ENST00000420751		ChiTaRS3.1			AF272379	KMT2A	chr11	118355590	+	KMT2A	chr11	118352667	-
intron-3CDS	ENST00000339859	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000339859	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000339859	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000339859	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000339859	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000339859	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000339859	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000408019	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000408019	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000408019	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000408019	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000408019	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000408019	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000408019	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000428547	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000428547	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000428547	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000428547	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000428547	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000428547	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000428547	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000394811	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000394811	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000394811	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000394811	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000394811	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000394811	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000394811	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000497106	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000497106	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000497106	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000497106	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000497106	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000497106	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000497106	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000422491	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000422491	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000422491	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000422491	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000422491	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000422491	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000422491	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000319786	ENST00000339859		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000319786	ENST00000408019		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000319786	ENST00000428547		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-3CDS	ENST00000319786	ENST00000394811		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000319786	ENST00000497106		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-5UTR	ENST00000319786	ENST00000422491		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
intron-intron	ENST00000319786	ENST00000319786		ChiTaRS3.1			BE004099	USP54	chr10	75258777	+	USP54	chr10	75276352	-
3UTR-intron	ENST00000397195	ENST00000354258		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000425148		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000418205		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000440894		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000439781		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000424897		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000383235		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000414467		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000397195	ENST00000428324		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000354258		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000425148		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000418205		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000440894		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000439781		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000424897		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000383235		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000414467		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
3UTR-intron	ENST00000572915	ENST00000428324		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000354258		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000425148		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000418205		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000440894		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000439781		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000424897		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000383235		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000414467		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-intron	ENST00000451360	ENST00000428324		ChiTaRS3.1			BE504849	PAFAH1B1	chr17	2587611	-	TAP1	chr6	4247569	+
intron-3CDS	ENST00000266269	ENST00000554998		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000402312		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000335290		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000266269	ENST00000542471		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000266269	ENST00000554175		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000266269	ENST00000557502		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000554998		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000402312		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000335290		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000405309	ENST00000542471		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000405309	ENST00000554175		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000405309	ENST00000557502		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000554998		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000402312		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000335290		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000351933	ENST00000542471		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000351933	ENST00000554175		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000351933	ENST00000557502		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000554998		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000402312		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000335290		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3CDS	ENST00000215919	ENST00000542471		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000215919	ENST00000554175		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-3UTR	ENST00000215919	ENST00000557502		ChiTaRS3.1			BF594249	PATZ1	chr22	31736936	+	WDR25	chr14	100996329	-
intron-intron	ENST00000585421	ENST00000406775		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000585421	ENST00000342771		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000585421	ENST00000403018		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000585421	ENST00000489774		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000536189	ENST00000406775		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000536189	ENST00000342771		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000536189	ENST00000403018		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000536189	ENST00000489774		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000262768	ENST00000406775		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000262768	ENST00000342771		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000262768	ENST00000403018		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000262768	ENST00000489774		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000586057	ENST00000406775		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000586057	ENST00000342771		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000586057	ENST00000403018		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-intron	ENST00000586057	ENST00000489774		ChiTaRS3.1			BE938099	TIMP2	chr17	76850083	-	AUTS2	chr7	69760290	+
intron-3CDS	ENST00000452401	ENST00000237853		ChiTaRS3.1			BX538289	SPPL2B	chr19	2339463	-	ELL2	chr5	95234353	-
intron-intron	ENST00000452401	ENST00000431061		ChiTaRS3.1			BX538289	SPPL2B	chr19	2339463	-	ELL2	chr5	95234353	-
intron-intron	ENST00000452401	ENST00000506628		ChiTaRS3.1			BX538289	SPPL2B	chr19	2339463	-	ELL2	chr5	95234353	-
intron-3CDS	ENST00000376462	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376462	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000376462	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000376462	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000481700	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000481700	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000481700	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000481700	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000458595	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000458595	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000458595	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000458595	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
Frame-shit	ENST00000376454	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376454	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-3UTR	ENST00000376454	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-3UTR	ENST00000376454	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000376452	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000376452	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000376452	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000376452	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000430453	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000430453	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000430453	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000430453	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000307544	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000307544	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000307544	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000307544	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000396446	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396446	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000396446	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000396446	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000396445	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-intron	ENST00000396445	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000396445	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3UTR	ENST00000396445	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
Frame-shit	ENST00000376451	ENST00000376462		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000481700		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000458595		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000376454		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000376452		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000430453		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000307544		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-intron	ENST00000376451	ENST00000396446		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-3UTR	ENST00000376451	ENST00000396445		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
5CDS-3UTR	ENST00000376451	ENST00000376451		ChiTaRS3.1			BM975589	KIAA1217	chr10	24833056	-	KIAA1217	chr10	24835066	-
intron-3CDS	ENST00000392806	ENST00000314167		ChiTaRS3.1			BI015039	TMEM119	chr12	108985352	+	GAK	chr4	905553	+
intron-intron	ENST00000392806	ENST00000511163		ChiTaRS3.1			BI015039	TMEM119	chr12	108985352	+	GAK	chr4	905553	+
intron-intron	ENST00000392806	ENST00000509566		ChiTaRS3.1			BI015039	TMEM119	chr12	108985352	+	GAK	chr4	905553	+
3UTR-3CDS	ENST00000403681	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000541363	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000393577	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000393578	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000425208	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000536545	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-3CDS	ENST00000354636	ENST00000286574		ChiTaRS3.1			EU263620	HMGA2	chr12	66357153	+	WIF1	chr12	65471634	-
intron-intron	ENST00000268704	ENST00000389301		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000568369		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000567284		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000389302		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000563673		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000534992		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000268704	ENST00000543736		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000389301		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000568369		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000567284		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000389302		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000563673		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000534992		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000341316	ENST00000543736		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000389301		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000568369		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000567284		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000389302		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000563673		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000534992		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-intron	ENST00000565891	ENST00000543736		ChiTaRS3.1			BF744199	SPG7	chr16	89601385	-	FANCA	chr16	89835272	-
intron-3UTR	ENST00000340067	ENST00000340067		ChiTaRS3.1			N28979	KCTD21	chr11	77882659	+	KCTD21	chr11	77882622	-
intron-3CDS	ENST00000313368	ENST00000313368		ChiTaRS3.1			BG015639	TAF7	chr5	140699230	+	TAF7	chr5	140699364	-
5CDS-intron	ENST00000360375	ENST00000527185		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000360375	ENST00000528682		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000360375	ENST00000524871		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000360375	ENST00000418526		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000360375	ENST00000279463		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000360375	ENST00000524560		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000527185		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000528682		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000524871		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000418526		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000279463		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
5CDS-intron	ENST00000414626	ENST00000524560		ChiTaRS3.1			AW811579	LRRCC1	chr8	86035826	+	CNTN5	chr11	99903061	-
intron-3CDS	ENST00000524325	ENST00000536230		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000524325	ENST00000392282		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000524325	ENST00000538427		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000524325	ENST00000367456		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000524325	ENST00000461481		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000524325	ENST00000286332		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000307180	ENST00000536230		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000307180	ENST00000392282		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000307180	ENST00000538427		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000307180	ENST00000367456		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000307180	ENST00000461481		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000307180	ENST00000286332		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000520166	ENST00000536230		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000520166	ENST00000392282		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000520166	ENST00000538427		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000520166	ENST00000367456		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000520166	ENST00000461481		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000520166	ENST00000286332		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000519651	ENST00000536230		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000519651	ENST00000392282		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000519651	ENST00000538427		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000519651	ENST00000367456		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000519651	ENST00000461481		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000519651	ENST00000286332		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000518928	ENST00000536230		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000518928	ENST00000392282		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000518928	ENST00000538427		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000518928	ENST00000367456		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000518928	ENST00000461481		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-intron	ENST00000518928	ENST00000286332		ChiTaRS3.1			BF092129	TSNARE1	chr8	143407421	-	TAB2	chr6	149699377	-
intron-3CDS	ENST00000351231	ENST00000351231		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-3CDS	ENST00000351231	ENST00000302506		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-5UTR	ENST00000351231	ENST00000459900		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-3CDS	ENST00000302506	ENST00000351231		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-3CDS	ENST00000302506	ENST00000302506		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-5UTR	ENST00000302506	ENST00000459900		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-3CDS	ENST00000459900	ENST00000351231		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-3CDS	ENST00000459900	ENST00000302506		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-5UTR	ENST00000459900	ENST00000459900		ChiTaRS3.1			BG942139	CDC25A	chr3	48212672	+	CDC25A	chr3	48209413	+
intron-intron	ENST00000439616	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000443864	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000447398	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000449767	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000444676	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000222673	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000543843	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000459672	ENST00000563843		ChiTaRS3.1			BF367739	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000266604	ENST00000446450		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000266604	ENST00000354956		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000266604	ENST00000354449		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000266604	ENST00000469654		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000446587	ENST00000446450		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000446587	ENST00000354956		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000446587	ENST00000354449		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
intron-intron	ENST00000446587	ENST00000469654		ChiTaRS3.1			BM550429	LLPH	chr12	66528914	+	ATG7	chr3	11529092	-
5CDS-intron	ENST00000281928	ENST00000360803		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
5CDS-intron	ENST00000281928	ENST00000491635		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
5CDS-intron	ENST00000281928	ENST00000538293		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
5CDS-intron	ENST00000281928	ENST00000545048		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
intron-intron	ENST00000551197	ENST00000360803		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
intron-intron	ENST00000551197	ENST00000491635		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
intron-intron	ENST00000551197	ENST00000538293		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
intron-intron	ENST00000551197	ENST00000545048		ChiTaRS3.1			BG988299	MED13L	chr12	116403886	-	GTPBP4	chr10	1058602	-
intron-intron	ENST00000553277	ENST00000413658		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553277	ENST00000424697		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553277	ENST00000303915		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553277	ENST00000299667		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000243077	ENST00000413658		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000243077	ENST00000424697		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000243077	ENST00000303915		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000243077	ENST00000299667		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000338962	ENST00000413658		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000338962	ENST00000424697		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000338962	ENST00000303915		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000338962	ENST00000299667		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000554174	ENST00000413658		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000554174	ENST00000424697		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000554174	ENST00000303915		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000554174	ENST00000299667		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553446	ENST00000413658		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553446	ENST00000424697		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553446	ENST00000303915		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
intron-intron	ENST00000553446	ENST00000299667		ChiTaRS3.1			BF760669	LRP1	chr12	57588697	+	ZNF3	chr7	99670267	-
Frame-shit	ENST00000487257	ENST00000487257		ChiTaRS3.1			DB468309	PDE12	chr3	57542620	+	PDE12	chr3	57542139	+
Frame-shit	ENST00000487257	ENST00000311180		ChiTaRS3.1			DB468309	PDE12	chr3	57542620	+	PDE12	chr3	57542139	+
Frame-shit	ENST00000311180	ENST00000487257		ChiTaRS3.1			DB468309	PDE12	chr3	57542620	+	PDE12	chr3	57542139	+
Frame-shit	ENST00000311180	ENST00000311180		ChiTaRS3.1			DB468309	PDE12	chr3	57542620	+	PDE12	chr3	57542139	+
intron-3CDS	ENST00000460436	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000460436	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000460436	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000460436	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000460436	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000460436	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000440263	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000440263	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000440263	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000440263	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000440263	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000440263	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000535724	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000535724	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000535724	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000535724	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000535724	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000535724	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000346424	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000346424	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000346424	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000346424	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000346424	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000346424	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000319908	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000319908	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000319908	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000319908	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000319908	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000319908	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000287295	ENST00000460436		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3CDS	ENST00000287295	ENST00000440263		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000287295	ENST00000535724		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000287295	ENST00000346424		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000287295	ENST00000319908		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-3UTR	ENST00000287295	ENST00000287295		ChiTaRS3.1			AW835589	AIFM1	chrX	129265750	-	AIFM1	chrX	129270102	+
intron-intron	ENST00000439944	ENST00000429174		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000409762		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000413539		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000409582		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000258104		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000410020		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000409744		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000409651		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000410041		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000409366		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000394120		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000439944	ENST00000479049		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000429174		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000409762		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000413539		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000409582		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000258104		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000410020		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000409744		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000409651		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000410041		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000409366		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000394120		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000347624	ENST00000479049		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000429174		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000409762		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000413539		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000409582		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000258104		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000410020		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000409744		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000409651		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000410041		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000409366		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000394120		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-intron	ENST00000428839	ENST00000479049		ChiTaRS3.1			BI053549	LRRC15	chr3	194086206	+	DYSF	chr2	71764093	-
intron-3CDS	ENST00000361475	ENST00000361475		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000361475	ENST00000536701		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000361475	ENST00000536724		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536701	ENST00000361475		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536701	ENST00000536701		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536701	ENST00000536724		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536724	ENST00000361475		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536724	ENST00000536701		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-3CDS	ENST00000536724	ENST00000536724		ChiTaRS3.1			AA345479	TGM2	chr20	36757373	-	TGM2	chr20	36769717	-
intron-intron	ENST00000345097	ENST00000345097		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000345097	ENST00000261302		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000345097	ENST00000557258		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000345097	ENST00000555353		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000345097	ENST00000555658		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000261302	ENST00000345097		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000261302	ENST00000261302		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000261302	ENST00000557258		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000261302	ENST00000555353		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000261302	ENST00000555658		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000557258	ENST00000345097		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000557258	ENST00000261302		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000557258	ENST00000557258		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000557258	ENST00000555353		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000557258	ENST00000555658		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555353	ENST00000345097		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555353	ENST00000261302		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555353	ENST00000557258		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555353	ENST00000555353		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555353	ENST00000555658		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555658	ENST00000345097		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555658	ENST00000261302		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555658	ENST00000557258		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555658	ENST00000555353		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-intron	ENST00000555658	ENST00000555658		ChiTaRS3.1			BF367909	FOXN3	chr14	90047930	-	FOXN3	chr14	90047857	+
intron-3UTR	ENST00000319023	ENST00000352456		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000595018		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000392006		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000378215		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000602130		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000593587		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000319023	ENST00000263367		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-intron	ENST00000319023	ENST00000594207		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000352456		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000595018		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000392006		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000378215		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000602130		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000593587		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000539574	ENST00000263367		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-intron	ENST00000539574	ENST00000594207		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000352456		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000595018		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000392006		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000378215		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000602130		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000593587		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000530055	ENST00000263367		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-intron	ENST00000530055	ENST00000594207		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000352456		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000595018		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000392006		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000378215		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000602130		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000593587		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-3UTR	ENST00000526039	ENST00000263367		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-intron	ENST00000526039	ENST00000594207		ChiTaRS3.1			BF924509	NADSYN1	chr11	71211751	-	HNRNPUL1	chr19	41812739	+
intron-intron	ENST00000355630	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000355630	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000355630	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000396617	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000396617	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000396617	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402042	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402042	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402042	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000466278	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000466278	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000466278	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000407029	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000407029	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000407029	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402630	ENST00000369784		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402630	ENST00000487146		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-intron	ENST00000402630	ENST00000602849		ChiTaRS3.1			AJ312236	MKL1	chr22	40859094	-	RBM15	chr1	110886894	+
intron-3UTR	ENST00000274459	ENST00000355773		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000274459	ENST00000393019		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000274459	ENST00000481996		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-3UTR	ENST00000509910	ENST00000355773		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000509910	ENST00000393019		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000509910	ENST00000481996		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-3UTR	ENST00000500945	ENST00000355773		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000500945	ENST00000393019		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000500945	ENST00000481996		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-3UTR	ENST00000509598	ENST00000355773		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000509598	ENST00000393019		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
intron-intron	ENST00000509598	ENST00000481996		ChiTaRS3.1			BP386219	ATG12	chr5	115167051	+	SLC17A5	chr6	74303432	-
Frame-shit	ENST00000324862	ENST00000324862		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000324862	ENST00000543398		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000324862	ENST00000414970		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000324862	ENST00000467329		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
Frame-shit	ENST00000543398	ENST00000324862		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000543398	ENST00000543398		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000543398	ENST00000414970		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000543398	ENST00000467329		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
Frame-shit	ENST00000414970	ENST00000324862		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000414970	ENST00000543398		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000414970	ENST00000414970		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
5CDS-3UTR	ENST00000414970	ENST00000467329		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
3UTR-3CDS	ENST00000467329	ENST00000324862		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
3UTR-3UTR	ENST00000467329	ENST00000543398		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
3UTR-3UTR	ENST00000467329	ENST00000414970		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
3UTR-3UTR	ENST00000467329	ENST00000467329		ChiTaRS3.1			BQ307309	PRPF3	chr1	150307603	-	PRPF3	chr1	150315853	+
3UTR-3CDS	ENST00000388825	ENST00000368732		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
3UTR-3CDS	ENST00000388825	ENST00000368733		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
3UTR-intron	ENST00000388825	ENST00000477801		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-3CDS	ENST00000521722	ENST00000368732		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-3CDS	ENST00000521722	ENST00000368733		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-intron	ENST00000521722	ENST00000477801		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-3CDS	ENST00000517973	ENST00000368732		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-3CDS	ENST00000517973	ENST00000368733		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-intron	ENST00000517973	ENST00000477801		ChiTaRS3.1			AW794509	GPX3	chr5	150407982	+	S100A8	chr1	153362669	+
intron-intron	ENST00000380916	ENST00000376048		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000311066		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000235372		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000502727		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000413440		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000343137		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000503842		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000380916	ENST00000505823		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000376048		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000311066		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000235372		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000502727		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000413440		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000343137		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000503842		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-intron	ENST00000497966	ENST00000505823		ChiTaRS3.1			AW893619	ZDHHC21	chr9	14592523	+	PRDM2	chr1	14111804	-
intron-3UTR	ENST00000217456	ENST00000217456		ChiTaRS3.1			BF897919	APMAP	chr20	24944499	+	APMAP	chr20	24944232	-
intron-3UTR	ENST00000217456	ENST00000447138		ChiTaRS3.1			BF897919	APMAP	chr20	24944499	+	APMAP	chr20	24944232	-
intron-3UTR	ENST00000447138	ENST00000217456		ChiTaRS3.1			BF897919	APMAP	chr20	24944499	+	APMAP	chr20	24944232	-
intron-3UTR	ENST00000447138	ENST00000447138		ChiTaRS3.1			BF897919	APMAP	chr20	24944499	+	APMAP	chr20	24944232	-
intron-intron	ENST00000354577	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000354577	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000403834	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368068	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000479213	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368060	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368058	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000545957	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000368053	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000540546	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000354577		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000403834		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000368068		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000479213		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000368060		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000368058		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000545957		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000368053		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000540546		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000539158	ENST00000539158		ChiTaRS3.1			AW363299	MED23	chr6	131930370	+	MED23	chr6	131931678	-
intron-intron	ENST00000378743	ENST00000540797		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000380324		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000268049		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000536001		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000539772		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000558285		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000559711		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000378743	ENST00000558218		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000540797		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000380324		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000268049		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000536001		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000539772		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000558285		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000559711		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000548100	ENST00000558218		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000540797		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000380324		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000268049		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000536001		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000539772		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000558285		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000559711		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000552037	ENST00000558218		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000540797		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000380324		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000268049		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000536001		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000539772		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000558285		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000559711		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
intron-intron	ENST00000549407	ENST00000558218		ChiTaRS3.1			BF335959	ZFC3H1	chr12	72015755	+	USP3	chr15	63814705	-
In-frame	ENST00000393386	ENST00000393386		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
In-frame	ENST00000393386	ENST00000449182		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
5CDS-intron	ENST00000393386	ENST00000483028		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
In-frame	ENST00000449182	ENST00000393386		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
In-frame	ENST00000449182	ENST00000449182		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
5CDS-intron	ENST00000449182	ENST00000483028		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
intron-3CDS	ENST00000483028	ENST00000393386		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
intron-3CDS	ENST00000483028	ENST00000449182		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
intron-intron	ENST00000483028	ENST00000483028		ChiTaRS3.1			BG913369	PTPRZ1	chr7	121701200	-	PTPRZ1	chr7	121701221	+
intron-intron	ENST00000218089	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000218089		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000354548		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371160		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371157		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371145		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371144		ChiTaRS3.1			BE072239	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000376062	ENST00000262352		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000376062	ENST00000490167		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000376055	ENST00000262352		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000376055	ENST00000490167		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000307677	ENST00000262352		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000307677	ENST00000490167		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000420653	ENST00000262352		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000420653	ENST00000490167		ChiTaRS3.1			AU121859	BCL2L1	chr20	30285126	-	SLC1A1	chr9	4491767	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807609	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000563675	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000563675	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000541464	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000381414	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000396229	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000542583	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000219821	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000561503	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000563675		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000541464		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000381414		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000396229		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000542583		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000219821		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000561503		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000564959	ENST00000564959		ChiTaRS3.1			AW856759	TMC5	chr16	19475715	-	TMC5	chr16	19485826	-
intron-intron	ENST00000336431	ENST00000312358		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000485813		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000396698		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000396695		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000396688		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000396686		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000336431	ENST00000396689		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000312358		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000485813		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000396698		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000396695		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000396688		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000396686		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000469018	ENST00000396689		ChiTaRS3.1			BE501149	GGT7	chr20	33432967	-	SPEG	chr2	220344398	+
intron-intron	ENST00000293860	ENST00000257899		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-intron	ENST00000293860	ENST00000548925		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-intron	ENST00000293860	ENST00000549147		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-5UTR	ENST00000293860	ENST00000547076		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-intron	ENST00000293860	ENST00000551926		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-intron	ENST00000293860	ENST00000548556		ChiTaRS3.1			BF027549	POLR3K	chr16	97129	+	BLOC1S1	chr12	56110265	+
intron-3CDS	ENST00000445977	ENST00000454498		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-3CDS	ENST00000445977	ENST00000332246		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-3CDS	ENST00000445977	ENST00000311540		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-3CDS	ENST00000445977	ENST00000522854		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-3CDS	ENST00000445977	ENST00000544602		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-5UTR	ENST00000445977	ENST00000518542		ChiTaRS3.1			DB148679	COPG2	chr7	130301920	-	CSGALNACT1	chr8	19316044	-
intron-3UTR	ENST00000256689	ENST00000256689		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-3UTR	ENST00000256689	ENST00000551374		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-intron	ENST00000256689	ENST00000547252		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-3UTR	ENST00000551374	ENST00000256689		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-3UTR	ENST00000551374	ENST00000551374		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-intron	ENST00000551374	ENST00000547252		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-3UTR	ENST00000547252	ENST00000256689		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-3UTR	ENST00000547252	ENST00000551374		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
intron-intron	ENST00000547252	ENST00000547252		ChiTaRS3.1			AW993759	SLC38A2	chr12	46753539	+	SLC38A2	chr12	46753680	-
5CDS-intron	ENST00000442092	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000442092	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000442092	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000442092	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000442092	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000266022	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000266022	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000266022	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000266022	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000266022	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000443081	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000443081	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000443081	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000443081	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000443081	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000539992	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000539992	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000539992	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000539992	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000539992	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
3UTR-intron	ENST00000441115	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
3UTR-intron	ENST00000441115	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
3UTR-intron	ENST00000441115	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
3UTR-intron	ENST00000441115	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
3UTR-intron	ENST00000441115	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000422955	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000422955	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000422955	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000422955	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
5CDS-intron	ENST00000422955	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-intron	ENST00000421682	ENST00000379441		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-intron	ENST00000421682	ENST00000179765		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-intron	ENST00000421682	ENST00000551812		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-intron	ENST00000421682	ENST00000549884		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-intron	ENST00000421682	ENST00000553222		ChiTaRS3.1			BQ367639	RBM6	chr3	50099436	-	BAZ2A	chr12	57004189	+
intron-3CDS	ENST00000359156	ENST00000359156		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000359156	ENST00000541972		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000359156	ENST00000396620		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000359156	ENST00000432237		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-intron	ENST00000359156	ENST00000539632		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000541972	ENST00000359156		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000541972	ENST00000541972		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000541972	ENST00000396620		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000541972	ENST00000432237		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-intron	ENST00000541972	ENST00000539632		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000396620	ENST00000359156		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000396620	ENST00000541972		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000396620	ENST00000396620		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000396620	ENST00000432237		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-intron	ENST00000396620	ENST00000539632		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000432237	ENST00000359156		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000432237	ENST00000541972		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000432237	ENST00000396620		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000432237	ENST00000432237		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-intron	ENST00000432237	ENST00000539632		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000539632	ENST00000359156		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000539632	ENST00000541972		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000539632	ENST00000396620		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-3CDS	ENST00000539632	ENST00000432237		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
intron-intron	ENST00000539632	ENST00000539632		ChiTaRS3.1			BI007059	CD163	chr12	7653906	-	CD163	chr12	7653849	+
5CDS-intron	ENST00000253363	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000253363	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000253363	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000253363	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000253363	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000253363	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-intron	ENST00000361162	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000361162	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000361162	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000361162	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000361162	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000361162	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-intron	ENST00000528062	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000528062	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000528062	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000528062	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000528062	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000528062	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-intron	ENST00000407261	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000407261	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000407261	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000407261	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000407261	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
5CDS-5UTR	ENST00000407261	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-intron	ENST00000397370	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000397370	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000397370	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000397370	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000397370	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000397370	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-intron	ENST00000463098	ENST00000253363		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000463098	ENST00000361162		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000463098	ENST00000528062		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000463098	ENST00000407261		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000463098	ENST00000397370		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
intron-5UTR	ENST00000463098	ENST00000463098		ChiTaRS3.1			DB103179	RBM39	chr20	34312491	-	RBM39	chr20	34329924	-
3UTR-intron	ENST00000340934	ENST00000359271		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
3UTR-intron	ENST00000340934	ENST00000486000		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
intron-intron	ENST00000496267	ENST00000359271		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
intron-intron	ENST00000496267	ENST00000486000		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
3UTR-intron	ENST00000537020	ENST00000359271		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
3UTR-intron	ENST00000537020	ENST00000486000		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
3UTR-intron	ENST00000539697	ENST00000359271		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
3UTR-intron	ENST00000539697	ENST00000486000		ChiTaRS3.1			BU194749	BROX	chr1	222906142	+	SLC2A10	chr20	45338397	+
intron-intron	ENST00000341164	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000341164	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000341164	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000341164	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000341164	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000341164	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000536132	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000536132	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000536132	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000536132	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000536132	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000536132	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000552579	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000552579	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000552579	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000552579	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000552579	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000552579	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547828	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547828	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547828	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000547828	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547828	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547828	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547121	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547121	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547121	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000547121	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547121	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000547121	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000546715	ENST00000341164		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000546715	ENST00000536132		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000546715	ENST00000552579		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3UTR	ENST00000546715	ENST00000547828		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000546715	ENST00000547121		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-intron	ENST00000546715	ENST00000546715		ChiTaRS3.1			AV708299	ZNF606	chr19	58508980	-	ZNF606	chr19	58509052	+
intron-3CDS	ENST00000367279	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000367279	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000367279	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000367279	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000367279	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000367279	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000309017	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000309017	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000309017	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000309017	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000309017	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000309017	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000308986	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000308986	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000308986	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000308986	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000308986	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000308986	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000544762	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000544762	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000544762	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000544762	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000544762	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000544762	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000543735	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000543735	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000543735	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000543735	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000543735	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000543735	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000492977	ENST00000367279		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000492977	ENST00000309017		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-3CDS	ENST00000492977	ENST00000308986		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000492977	ENST00000544762		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000492977	ENST00000543735		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-5UTR	ENST00000492977	ENST00000492977		ChiTaRS3.1			BG259619	PTPN7	chr1	202123380	+	PTPN7	chr1	202123331	-
intron-intron	ENST00000285279	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000285279		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000433959		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000545390		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428648		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428097		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000418904		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000454227		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000453256		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000427700		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000471168		ChiTaRS3.1			AW594599	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-3UTR	ENST00000518164	ENST00000359878		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000518164	ENST00000409157		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-intron	ENST00000518164	ENST00000468413		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000521291	ENST00000359878		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000521291	ENST00000409157		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-intron	ENST00000521291	ENST00000468413		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000396070	ENST00000359878		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000396070	ENST00000409157		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-intron	ENST00000396070	ENST00000468413		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000287038	ENST00000359878		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000287038	ENST00000409157		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-intron	ENST00000287038	ENST00000468413		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000523172	ENST00000359878		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000523172	ENST00000409157		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-intron	ENST00000523172	ENST00000468413		ChiTaRS3.1			BQ221159	RPL30	chr8	99054945	-	KCTD18	chr2	201353840	-
intron-3UTR	ENST00000539111	ENST00000261772		ChiTaRS3.1			AW206459	POLG2	chr17	62477303	-	AARS	chr16	70286364	-
intron-intron	ENST00000539111	ENST00000564359		ChiTaRS3.1			AW206459	POLG2	chr17	62477303	-	AARS	chr16	70286364	-
intron-3UTR	ENST00000582501	ENST00000261772		ChiTaRS3.1			AW206459	POLG2	chr17	62477303	-	AARS	chr16	70286364	-
intron-intron	ENST00000582501	ENST00000564359		ChiTaRS3.1			AW206459	POLG2	chr17	62477303	-	AARS	chr16	70286364	-
intron-intron	ENST00000389153	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000389153	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000608853	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000377617	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000550104	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000542287	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000535949	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000389153		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000608853		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000377617		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000550104		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000542287		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000535949		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000549455	ENST00000549455		ChiTaRS3.1			BF084059	ATXN2	chr12	111981647	+	ATXN2	chr12	111980951	-
intron-intron	ENST00000517298	ENST00000517298		ChiTaRS3.1			BE162309	CA13	chr8	86275882	-	CA13	chr8	86276224	-
intron-intron	ENST00000517298	ENST00000321764		ChiTaRS3.1			BE162309	CA13	chr8	86275882	-	CA13	chr8	86276224	-
intron-intron	ENST00000321764	ENST00000517298		ChiTaRS3.1			BE162309	CA13	chr8	86275882	-	CA13	chr8	86276224	-
intron-intron	ENST00000321764	ENST00000321764		ChiTaRS3.1			BE162309	CA13	chr8	86275882	-	CA13	chr8	86276224	-
intron-intron	ENST00000408742	ENST00000408742		ChiTaRS3.1			F00809	MIR548N	chr2	179453674	+	MIR548N	chr2	179453399	-
5UTR-3CDS	ENST00000372725	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372725	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-intron	ENST00000372725	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372724	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-intron	ENST00000372724	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000287239	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-intron	ENST00000287239	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372714	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-intron	ENST00000372714	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-3CDS	ENST00000372711	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
5UTR-intron	ENST00000372711	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000425967		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000397091		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000447712		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000341462		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000532791		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000397113		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000356207		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000335922		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000326324		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000397103		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3CDS	ENST00000490365	ENST00000397108		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-intron	ENST00000490365	ENST00000496629		ChiTaRS3.1			BF932159	KAT6B	chr10	76602474	-	FGFR1	chr8	38275432	-
intron-3UTR	ENST00000272203	ENST00000272203		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-3UTR	ENST00000272203	ENST00000414478		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-intron	ENST00000272203	ENST00000485632		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-3UTR	ENST00000414478	ENST00000272203		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-3UTR	ENST00000414478	ENST00000414478		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-intron	ENST00000414478	ENST00000485632		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-3UTR	ENST00000485632	ENST00000272203		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-3UTR	ENST00000485632	ENST00000414478		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-intron	ENST00000485632	ENST00000485632		ChiTaRS3.1			BF529879	PLEKHA6	chr1	204191423	+	PLEKHA6	chr1	204191340	-
intron-5UTR	ENST00000368457	ENST00000529631		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000368457	ENST00000529191		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000368457	ENST00000273550		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000368457	ENST00000526640		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-intron	ENST00000368457	ENST00000532601		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
5CDS-5UTR	ENST00000368456	ENST00000529631		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
5CDS-5UTR	ENST00000368456	ENST00000529191		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
5CDS-5UTR	ENST00000368456	ENST00000273550		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
5CDS-5UTR	ENST00000368456	ENST00000526640		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
5CDS-intron	ENST00000368456	ENST00000532601		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000483463	ENST00000529631		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000483463	ENST00000529191		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000483463	ENST00000273550		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-5UTR	ENST00000483463	ENST00000526640		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
intron-intron	ENST00000483463	ENST00000532601		ChiTaRS3.1			AK095899	PYGO2	chr1	154931216	-	FTH1	chr11	61734915	-
3UTR-intron	ENST00000530758	ENST00000251808		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
3UTR-intron	ENST00000530758	ENST00000395927		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
3UTR-intron	ENST00000530758	ENST00000517674		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
5CDS-intron	ENST00000256463	ENST00000251808		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
5CDS-intron	ENST00000256463	ENST00000395927		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
5CDS-intron	ENST00000256463	ENST00000517674		ChiTaRS3.1			BF352519	BRK1	chr3	10168012	+	GRHL2	chr8	102566700	-
Frame-shit	ENST00000343053	ENST00000343053		ChiTaRS3.1			BG827779	NELFB	chr9	140166977	-	NELFB	chr9	140167039	+
intron-intron	ENST00000588847	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588847	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588847	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000588061	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000335749	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000301624	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000541771	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000216487		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000418924		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000544502	ENST00000557762		ChiTaRS3.1			BI021859	TNRC6C	chr17	76089913	-	RIN3	chr14	93097760	-
intron-intron	ENST00000226299	ENST00000357277		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000226299	ENST00000303843		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000226299	ENST00000380064		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000226299	ENST00000469714		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000606142	ENST00000357277		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000606142	ENST00000303843		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000606142	ENST00000380064		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000606142	ENST00000469714		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000503467	ENST00000357277		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000503467	ENST00000303843		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000503467	ENST00000380064		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000503467	ENST00000469714		ChiTaRS3.1			CV416019	LAP3	chr4	17607377	-	REPS2	chrX	17062375	+
intron-intron	ENST00000300433	ENST00000300433		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000300433	ENST00000507382		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000300433	ENST00000511882		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000507382	ENST00000300433		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000507382	ENST00000507382		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000507382	ENST00000511882		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000511882	ENST00000300433		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000511882	ENST00000507382		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000511882	ENST00000511882		ChiTaRS3.1			AK026449	TMEM92	chr17	48355023	+	TMEM92	chr17	48351967	+
intron-intron	ENST00000344691	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000344691	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000325074	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000437180	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000300305	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000399240	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000486278	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000494829	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000344691		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000325074		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000437180		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000300305		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000399240		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000486278		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000494829		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000358356	ENST00000358356		ChiTaRS3.1			AW847539	RUNX1	chr21	36368264	+	RUNX1	chr21	36321722	-
intron-intron	ENST00000286548	ENST00000379261		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000416382		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000450189		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000542579		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000399850		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000417956		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000354440		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000427450		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000315874		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000608830		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000609692		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000354897		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000286548	ENST00000537122		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000379261		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000416382		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000450189		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000542579		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000399850		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000417956		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000354440		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000427450		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000315874		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000608830		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000609692		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000354897		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
intron-intron	ENST00000397476	ENST00000537122		ChiTaRS3.1			BI021299	GNAQ	chr9	80590016	+	CELF2	chr10	11288431	+
3UTR-intron	ENST00000328252	ENST00000263734		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
3UTR-intron	ENST00000328252	ENST00000467888		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000534838	ENST00000263734		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000534838	ENST00000467888		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000483254	ENST00000263734		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-intron	ENST00000483254	ENST00000467888		ChiTaRS3.1			BI052179	PAPPA	chr9	119161880	-	EPAS1	chr2	46592621	-
intron-3UTR	ENST00000344721	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000344721	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000344721	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000344721	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000344721	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000344721	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000355292	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000355292	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000355292	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000355292	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000355292	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000355292	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000358102	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000358102	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000358102	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000358102	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000358102	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000358102	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000512865	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000512865	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000512865	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000512865	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000512865	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000512865	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000511528	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000511528	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000511528	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000511528	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000511528	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000511528	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000503313	ENST00000344721		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000503313	ENST00000355292		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000503313	ENST00000358102		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-3UTR	ENST00000503313	ENST00000512865		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000503313	ENST00000511528		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000503313	ENST00000503313		ChiTaRS3.1			W28789	NR3C2	chr4	149356705	+	NR3C2	chr4	149001759	-
intron-intron	ENST00000356166	ENST00000326003		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000356166	ENST00000597483		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000356166	ENST00000593997		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000356166	ENST00000595952		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000356166	ENST00000360617		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000568722	ENST00000326003		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000568722	ENST00000597483		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000568722	ENST00000593997		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000568722	ENST00000595952		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000568722	ENST00000360617		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000482749	ENST00000326003		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000482749	ENST00000597483		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000482749	ENST00000593997		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000482749	ENST00000595952		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000482749	ENST00000360617		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000395073	ENST00000326003		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000395073	ENST00000597483		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000395073	ENST00000593997		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000395073	ENST00000595952		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000395073	ENST00000360617		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000287468	ENST00000326003		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000287468	ENST00000597483		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000287468	ENST00000593997		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000287468	ENST00000595952		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-intron	ENST00000287468	ENST00000360617		ChiTaRS3.1			BI046989	FBRS	chr16	30673741	-	KLK3	chr19	51360463	+
intron-3UTR	ENST00000248553	ENST00000361566		ChiTaRS3.1			CA336509	HSPB1	chr7	75933068	+	KRT19	chr17	39679981	-
intron-3UTR	ENST00000429938	ENST00000361566		ChiTaRS3.1			CA336509	HSPB1	chr7	75933068	+	KRT19	chr17	39679981	-
3UTR-3UTR	ENST00000379440	ENST00000379440		ChiTaRS3.1			BU689989	PRNP	chr20	4681875	-	PRNP	chr20	4681551	+
3UTR-3UTR	ENST00000379440	ENST00000430350		ChiTaRS3.1			BU689989	PRNP	chr20	4681875	-	PRNP	chr20	4681551	+
3UTR-3UTR	ENST00000430350	ENST00000379440		ChiTaRS3.1			BU689989	PRNP	chr20	4681875	-	PRNP	chr20	4681551	+
3UTR-3UTR	ENST00000430350	ENST00000430350		ChiTaRS3.1			BU689989	PRNP	chr20	4681875	-	PRNP	chr20	4681551	+
intron-3UTR	ENST00000261973	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000261973	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000540173	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000540173	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000527432	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000527432	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000525321	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000525321	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000526754	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000526754	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000532483	ENST00000335350		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-3UTR	ENST00000532483	ENST00000373192		ChiTaRS3.1			BF514639	RBM25	chr14	73569141	+	UNC5B	chr10	73059185	+
intron-intron	ENST00000261772	ENST00000379589		ChiTaRS3.1			BF929009	AARS	chr16	70298990	+	LHFP	chr13	40110808	+
intron-intron	ENST00000261772	ENST00000495922		ChiTaRS3.1			BF929009	AARS	chr16	70298990	+	LHFP	chr13	40110808	+
intron-intron	ENST00000564359	ENST00000379589		ChiTaRS3.1			BF929009	AARS	chr16	70298990	+	LHFP	chr13	40110808	+
intron-intron	ENST00000564359	ENST00000495922		ChiTaRS3.1			BF929009	AARS	chr16	70298990	+	LHFP	chr13	40110808	+
5CDS-intron	ENST00000427410	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000427410	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000427410	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000427410	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000427410	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000447388	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000447388	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000447388	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000447388	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000447388	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000425457	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000425457	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000425457	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000425457	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000425457	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000456393	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000456393	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000456393	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000456393	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000456393	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000372654	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372654	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372654	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372654	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372654	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000372653	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372653	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372653	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372653	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372653	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000372652	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372652	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372652	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372652	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372652	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000372651	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372651	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372651	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372651	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000372651	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000440226	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000440226	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000440226	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000440226	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000440226	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-intron	ENST00000308733	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000308733	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000308733	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000308733	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
5CDS-3UTR	ENST00000308733	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-intron	ENST00000483091	ENST00000396353		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-3UTR	ENST00000483091	ENST00000396355		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-3UTR	ENST00000483091	ENST00000396354		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-3UTR	ENST00000483091	ENST00000342673		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-3UTR	ENST00000483091	ENST00000571896		ChiTaRS3.1			BE835819	NFYC	chr1	41236435	+	NDE1	chr16	15818178	-
intron-intron	ENST00000378564	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000378564	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000378564	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000378564	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000378564	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321584	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321584	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321584	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321584	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321584	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321603	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321603	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321603	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321603	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000321603	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000342854	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000342854	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000342854	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000342854	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000342854	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395029	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395029	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395029	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395029	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395029	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000432532	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000432532	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000432532	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000432532	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000432532	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000378560	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000378560	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000378560	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000378560	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000378560	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000520958	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000520958	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000520958	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000520958	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000520958	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000518915	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000518915	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000518915	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000518915	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000518915	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395023	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395023	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395023	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395023	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
3UTR-intron	ENST00000395023	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000517478	ENST00000302349		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000517478	ENST00000541076		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000517478	ENST00000606320		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000517478	ENST00000392425		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000517478	ENST00000539639		ChiTaRS3.1			AW856949	TCF7	chr5	133483367	+	MPHOSPH9	chr12	123701277	-
intron-intron	ENST00000332142	ENST00000410107		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000332142	ENST00000397423		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000332142	ENST00000495262		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000332142	ENST00000379597		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000332142	ENST00000316170		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000332142	ENST00000265012		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000328032	ENST00000410107		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000328032	ENST00000397423		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000328032	ENST00000495262		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000328032	ENST00000379597		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000328032	ENST00000316170		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000328032	ENST00000265012		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000477019	ENST00000410107		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000477019	ENST00000397423		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000477019	ENST00000495262		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000477019	ENST00000379597		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000477019	ENST00000316170		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-3UTR	ENST00000477019	ENST00000265012		ChiTaRS3.1			BP398409	KCNH7	chr2	163607913	-	GCNT2	chr6	10629231	+
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN920239	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000398148	ENST00000398148		ChiTaRS3.1			BU619509	KHSRP	chr19	6414007	+	KHSRP	chr19	6414179	-
intron-intron	ENST00000392313	ENST00000392313		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-3UTR	ENST00000392313	ENST00000262815		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-intron	ENST00000392313	ENST00000586189		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
3UTR-intron	ENST00000262815	ENST00000392313		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
3UTR-3UTR	ENST00000262815	ENST00000262815		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
3UTR-intron	ENST00000262815	ENST00000586189		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-intron	ENST00000586189	ENST00000392313		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-3UTR	ENST00000586189	ENST00000262815		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-intron	ENST00000586189	ENST00000586189		ChiTaRS3.1			BU617329	MAU2	chr19	19468964	-	MAU2	chr19	19468917	+
intron-intron	ENST00000285900	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000285900	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518142	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000340592	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000521843	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000448073	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518783	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000285900		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000518142		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000340592		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000521843		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000448073		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000518783		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000518862	ENST00000518862		ChiTaRS3.1			AW895009	GRIA1	chr5	153178529	-	GRIA1	chr5	153179066	+
intron-intron	ENST00000406875	ENST00000583088		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000406875	ENST00000331718		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000428878	ENST00000583088		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000428878	ENST00000331718		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000342645	ENST00000583088		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000342645	ENST00000331718		ChiTaRS3.1			BE073399	HIPK2	chr7	139255485	+	KCNJ12	chr17	21309207	-
intron-intron	ENST00000351050	ENST00000351050		ChiTaRS3.1			CD620139	GNAT2	chr1	110154864	-	GNAT2	chr1	110155867	-
In-frame	ENST00000253925	ENST00000253925		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
In-frame	ENST00000253925	ENST00000389547		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
5CDS-intron	ENST00000253925	ENST00000530548		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
In-frame	ENST00000389547	ENST00000253925		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
In-frame	ENST00000389547	ENST00000389547		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
5CDS-intron	ENST00000389547	ENST00000530548		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
3UTR-3CDS	ENST00000530548	ENST00000253925		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
3UTR-3CDS	ENST00000530548	ENST00000389547		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
3UTR-intron	ENST00000530548	ENST00000530548		ChiTaRS3.1			BQ307279	PPFIA1	chr11	70221198	+	PPFIA1	chr11	70172449	+
intron-intron	ENST00000261406	ENST00000261406		ChiTaRS3.1			BG945499	EMG1	chr12	7084842	-	EMG1	chr12	7084604	+
intron-intron	ENST00000261406	ENST00000546220		ChiTaRS3.1			BG945499	EMG1	chr12	7084842	-	EMG1	chr12	7084604	+
intron-intron	ENST00000546220	ENST00000261406		ChiTaRS3.1			BG945499	EMG1	chr12	7084842	-	EMG1	chr12	7084604	+
intron-intron	ENST00000546220	ENST00000546220		ChiTaRS3.1			BG945499	EMG1	chr12	7084842	-	EMG1	chr12	7084604	+
In-frame	ENST00000299957	ENST00000299957		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
Frame-shit	ENST00000299957	ENST00000360824		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
Frame-shit	ENST00000299957	ENST00000345795		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
5CDS-3UTR	ENST00000299957	ENST00000429162		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
3UTR-3CDS	ENST00000360824	ENST00000299957		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
3UTR-3CDS	ENST00000360824	ENST00000360824		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
3UTR-3CDS	ENST00000360824	ENST00000345795		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
3UTR-3UTR	ENST00000360824	ENST00000429162		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
In-frame	ENST00000345795	ENST00000299957		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
Frame-shit	ENST00000345795	ENST00000360824		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
Frame-shit	ENST00000345795	ENST00000345795		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
5CDS-3UTR	ENST00000345795	ENST00000429162		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
intron-3CDS	ENST00000429162	ENST00000299957		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
intron-3CDS	ENST00000429162	ENST00000360824		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
intron-3CDS	ENST00000429162	ENST00000345795		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
intron-3UTR	ENST00000429162	ENST00000429162		ChiTaRS3.1			BQ229829	CASC4	chr15	44630503	+	CASC4	chr15	44581283	+
intron-5UTR	ENST00000317977	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000317977	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395642	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395647	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000417251	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395643	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000404648		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000405164		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000336098		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
intron-5UTR	ENST00000395645	ENST00000407946		ChiTaRS3.1			AV657679	SLC5A10	chr17	18872216	+	FGG	chr4	155533792	-
3UTR-intron	ENST00000533861	ENST00000359979		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000533861	ENST00000372088		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-3UTR	ENST00000533861	ENST00000224756		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000533861	ENST00000494144		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000533861	ENST00000543283		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000333449	ENST00000359979		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000333449	ENST00000372088		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-3UTR	ENST00000333449	ENST00000224756		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000333449	ENST00000494144		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000333449	ENST00000543283		ChiTaRS3.1			DB295859	TMEM179B	chr11	62557656	-	CCSER2	chr10	86275153	-
3UTR-intron	ENST00000461366	ENST00000315183		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
3UTR-intron	ENST00000461366	ENST00000562829		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
3UTR-intron	ENST00000461366	ENST00000395799		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
3UTR-intron	ENST00000461366	ENST00000432286		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
intron-intron	ENST00000580109	ENST00000315183		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
intron-intron	ENST00000580109	ENST00000562829		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
intron-intron	ENST00000580109	ENST00000395799		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
intron-intron	ENST00000580109	ENST00000432286		ChiTaRS3.1			BF920959	RNF112	chr17	19320049	-	TNRC6A	chr16	24790369	+
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000426496	ENST00000476522		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000426496	ENST00000367742		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000426496	ENST00000338920		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000392078	ENST00000476522		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000392078	ENST00000367742		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000392078	ENST00000338920		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
3UTR-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
3UTR-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
3UTR-intron	ENST00000476522	ENST00000476522		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
3UTR-intron	ENST00000476522	ENST00000367742		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
3UTR-intron	ENST00000476522	ENST00000338920		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000367742	ENST00000476522		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000367742	ENST00000367742		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000367742	ENST00000338920		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000338920	ENST00000476522		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000338920	ENST00000367742		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
5CDS-intron	ENST00000338920	ENST00000338920		ChiTaRS3.1			BM995409	PRRC2C	chr1	171501679	-	PRRC2C	chr1	171510342	-
intron-3UTR	ENST00000395035	ENST00000455789		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-3UTR	ENST00000395035	ENST00000310015		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-3UTR	ENST00000395035	ENST00000418194		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-intron	ENST00000395035	ENST00000483084		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-3UTR	ENST00000378803	ENST00000455789		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-3UTR	ENST00000378803	ENST00000310015		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-3UTR	ENST00000378803	ENST00000418194		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-intron	ENST00000378803	ENST00000483084		ChiTaRS3.1			BF885809	CDKL4	chr2	39431604	-	SP3	chr2	174773556	-
intron-intron	ENST00000299381	ENST00000299381		ChiTaRS3.1			BE940439	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000299381	ENST00000470481		ChiTaRS3.1			BE940439	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000470481	ENST00000299381		ChiTaRS3.1			BE940439	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000470481	ENST00000470481		ChiTaRS3.1			BE940439	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000396353	ENST00000301067		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000396353	ENST00000549743		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000396355	ENST00000301067		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000396355	ENST00000549743		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000396354	ENST00000301067		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000396354	ENST00000549743		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000342673	ENST00000301067		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000342673	ENST00000549743		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000571896	ENST00000301067		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
intron-intron	ENST00000571896	ENST00000549743		ChiTaRS3.1			BF846439	NDE1	chr16	15797293	+	KMT2D	chr19	36221191	-
3UTR-intron	ENST00000254616	ENST00000361354		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
3UTR-intron	ENST00000254616	ENST00000360982		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
3UTR-intron	ENST00000254616	ENST00000478449		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000530751	ENST00000361354		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000530751	ENST00000360982		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000530751	ENST00000478449		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000472836	ENST00000361354		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000472836	ENST00000360982		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
intron-intron	ENST00000472836	ENST00000478449		ChiTaRS3.1			AA653739	TIMM10B	chr11	6505547	-	NCKAP1	chr2	183798458	+
In-frame	ENST00000283131	ENST00000083182		ChiTaRS3.1			AI538939	SMARCA5	chr4	144471220	-	APPBP2	chr17	58539388	+
5CDS-5UTR	ENST00000283131	ENST00000592995		ChiTaRS3.1			AI538939	SMARCA5	chr4	144471220	-	APPBP2	chr17	58539388	+
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			AI651289	BOLA2	chr16	29818157	-	BOLA2	chr16	29821524	+
3UTR-intron	ENST00000331860	ENST00000322989		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000331860	ENST00000563390		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000331860	ENST00000575669		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000331860	ENST00000576436		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000331860	ENST00000565420		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000331860	ENST00000569083		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000322989		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000563390		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000575669		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000576436		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000565420		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000495845	ENST00000569083		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000322989		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000563390		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000575669		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000576436		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000565420		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
3UTR-intron	ENST00000295367	ENST00000569083		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000322989		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000563390		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000575669		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000576436		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000565420		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000542696	ENST00000569083		ChiTaRS3.1			BE716419	SPRR3	chr1	152976131	+	RPS15A	chr16	18800992	+
intron-intron	ENST00000397002	ENST00000397002		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000397002	ENST00000561028		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000397002	ENST00000396997		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000397002	ENST00000560550		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000397002	ENST00000396995		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000561028	ENST00000397002		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000561028	ENST00000561028		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000561028	ENST00000396997		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000561028	ENST00000560550		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000561028	ENST00000396995		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396997	ENST00000397002		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396997	ENST00000561028		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396997	ENST00000396997		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396997	ENST00000560550		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396997	ENST00000396995		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000560550	ENST00000397002		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000560550	ENST00000561028		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000560550	ENST00000396997		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000560550	ENST00000560550		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000560550	ENST00000396995		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396995	ENST00000397002		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396995	ENST00000561028		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396995	ENST00000396997		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396995	ENST00000560550		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-intron	ENST00000396995	ENST00000396995		ChiTaRS3.1			W22249	NRL	chr14	24553833	+	NRL	chr14	24553693	-
intron-3CDS	ENST00000355693	ENST00000355693		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000355693	ENST00000545127		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000355693	ENST00000541455		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000355693	ENST00000537289		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000355693	ENST00000537581		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000545127	ENST00000355693		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000545127	ENST00000545127		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000545127	ENST00000541455		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000545127	ENST00000537289		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000545127	ENST00000537581		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000541455	ENST00000355693		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000541455	ENST00000545127		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000541455	ENST00000541455		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000541455	ENST00000537289		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000541455	ENST00000537581		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537289	ENST00000355693		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537289	ENST00000545127		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537289	ENST00000541455		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537289	ENST00000537289		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000537289	ENST00000537581		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537581	ENST00000355693		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537581	ENST00000545127		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537581	ENST00000541455		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-3CDS	ENST00000537581	ENST00000537289		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000537581	ENST00000537581		ChiTaRS3.1			BQ774159	COA4	chr11	73584010	+	COA4	chr11	73584186	-
intron-intron	ENST00000408667	ENST00000408667		ChiTaRS3.1			BG573359	MIR548F1	chr1	186305714	-	MIR548F1	chr1	186326287	-
intron-intron	ENST00000514355	ENST00000424834		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000382108		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000382095		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000474317		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000399949		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000409126		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
intron-intron	ENST00000514355	ENST00000343003		ChiTaRS3.1			BI057139	RPL32P3	chr3	129106640	+	SPATA13	chr13	24767312	+
3UTR-3CDS	ENST00000332556	ENST00000560403		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000419198		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000216799		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-5UTR	ENST00000332556	ENST00000558200		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000560403		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000419198		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000216799		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000397181	ENST00000558200		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000560403		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000419198		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000216799		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000471046	ENST00000558200		ChiTaRS3.1			AI696199	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-intron	ENST00000485760	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000485760	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000485760	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000485760	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371236	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371236	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371236	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371236	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371234	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371234	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371234	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371234	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000420954	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000420954	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000420954	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000420954	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000439789	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000439789	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000439789	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000439789	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000414851	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000414851	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000414851	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000414851	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371231	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371231	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371231	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371231	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371230	ENST00000383699		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371230	ENST00000407528		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371230	ENST00000405615		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000371230	ENST00000485126		ChiTaRS3.1			T05089	DAB1	chr1	58507606	+	CADM2	chr3	85453850	-
intron-intron	ENST00000359337	ENST00000295408		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000359337	ENST00000421804		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000359337	ENST00000409780		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000449103	ENST00000295408		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000449103	ENST00000421804		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000449103	ENST00000409780		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000496720	ENST00000295408		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000496720	ENST00000421804		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000496720	ENST00000409780		ChiTaRS3.1			AA984189	PLXNB2	chr22	50723781	-	MERTK	chr2	112783070	-
intron-intron	ENST00000336023	ENST00000362507		ChiTaRS3.1			AI880459	TUBA1B	chr12	49521648	+	RNU5F-1	chr1	220160714	+
intron-3UTR	ENST00000216797	ENST00000216797		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000216797	ENST00000557140		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000216797	ENST00000557389		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-intron	ENST00000216797	ENST00000557100		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557140	ENST00000216797		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557140	ENST00000557140		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557140	ENST00000557389		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-intron	ENST00000557140	ENST00000557100		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557389	ENST00000216797		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557389	ENST00000557140		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557389	ENST00000557389		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-intron	ENST00000557389	ENST00000557100		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557100	ENST00000216797		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557100	ENST00000557140		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-3UTR	ENST00000557100	ENST00000557389		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-intron	ENST00000557100	ENST00000557100		ChiTaRS3.1			CB241819	NFKBIA	chr14	35870827	+	NFKBIA	chr14	35871073	-
intron-intron	ENST00000407775	ENST00000407775		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000407775	ENST00000520492		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000407775	ENST00000517361		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000407775	ENST00000522296		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000407775	ENST00000378472		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000407775		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000520492		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000517361		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000520492	ENST00000522296		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000520492	ENST00000378472		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000407775		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000520492		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000517361		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000517361	ENST00000522296		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000517361	ENST00000378472		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000407775		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000520492		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000517361		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000522296	ENST00000522296		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000522296	ENST00000378472		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000407775		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000520492		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000517361		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000378472	ENST00000522296		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000378472	ENST00000378472		ChiTaRS3.1			BQ778539	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			AM400881	BCR	chr22	23631865	+	ABL1	chr9	133729719	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			AM400881	BCR	chr22	23631865	+	ABL1	chr9	133729719	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			AM400881	BCR	chr22	23631865	+	ABL1	chr9	133729719	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			AM400881	BCR	chr22	23631865	+	ABL1	chr9	133729719	+
3UTR-3CDS	ENST00000392935	ENST00000295598		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000392935	ENST00000537345		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000392935	ENST00000369496		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000392935	ENST00000491156		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000295598		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000537345		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000522572	ENST00000369496		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000522572	ENST00000491156		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000295598		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000537345		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3CDS	ENST00000521158	ENST00000369496		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-3UTR	ENST00000521158	ENST00000491156		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000295598		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000537345		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3CDS	ENST00000022615	ENST00000369496		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
3UTR-3UTR	ENST00000022615	ENST00000491156		ChiTaRS3.1			BQ303769	VDAC3	chr8	42263233	-	ATP1A1	chr1	116932260	+
intron-intron	ENST00000328090	ENST00000328090		ChiTaRS3.1			BM683999	FAM208B	chr10	5756171	+	FAM208B	chr10	5741463	+
intron-3UTR	ENST00000328090	ENST00000463468		ChiTaRS3.1			BM683999	FAM208B	chr10	5756171	+	FAM208B	chr10	5741463	+
5CDS-intron	ENST00000463468	ENST00000328090		ChiTaRS3.1			BM683999	FAM208B	chr10	5756171	+	FAM208B	chr10	5741463	+
5CDS-3UTR	ENST00000463468	ENST00000463468		ChiTaRS3.1			BM683999	FAM208B	chr10	5756171	+	FAM208B	chr10	5741463	+
intron-3UTR	ENST00000354473	ENST00000381458		ChiTaRS3.1			BE715869	VPS72	chr1	151149451	+	TGM3	chr20	2321300	-
intron-intron	ENST00000354473	ENST00000463090		ChiTaRS3.1			BE715869	VPS72	chr1	151149451	+	TGM3	chr20	2321300	-
intron-3UTR	ENST00000496809	ENST00000381458		ChiTaRS3.1			BE715869	VPS72	chr1	151149451	+	TGM3	chr20	2321300	-
intron-intron	ENST00000496809	ENST00000463090		ChiTaRS3.1			BE715869	VPS72	chr1	151149451	+	TGM3	chr20	2321300	-
intron-3CDS	ENST00000366730	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000391865	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366726	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000312726	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
Frame-shit	ENST00000366728	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366723	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366722	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366721	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366718	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000470040	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366716	ENST00000369582		ChiTaRS3.1			BQ012719	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-5UTR	ENST00000374847	ENST00000336023		ChiTaRS3.1			BC001209	TMEM246	chr9	104249328	+	TUBA1B	chr12	49525164	-
intron-5UTR	ENST00000374848	ENST00000336023		ChiTaRS3.1			BC001209	TMEM246	chr9	104249328	+	TUBA1B	chr12	49525164	-
intron-5UTR	ENST00000374851	ENST00000336023		ChiTaRS3.1			BC001209	TMEM246	chr9	104249328	+	TUBA1B	chr12	49525164	-
intron-5UTR	ENST00000482920	ENST00000336023		ChiTaRS3.1			BC001209	TMEM246	chr9	104249328	+	TUBA1B	chr12	49525164	-
intron-3UTR	ENST00000406875	ENST00000406875		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000406875	ENST00000428878		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000406875	ENST00000342645		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-3UTR	ENST00000428878	ENST00000406875		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000428878	ENST00000428878		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000428878	ENST00000342645		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-3UTR	ENST00000342645	ENST00000406875		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000342645	ENST00000428878		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-intron	ENST00000342645	ENST00000342645		ChiTaRS3.1			BI035539	HIPK2	chr7	139251659	+	HIPK2	chr7	139251563	-
intron-3CDS	ENST00000393330	ENST00000393330		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000393330	ENST00000247829		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000393330	ENST00000546561		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000393330	ENST00000552128		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000393330	ENST00000552786		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000247829	ENST00000393330		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000247829	ENST00000247829		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000247829	ENST00000546561		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000247829	ENST00000552128		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000247829	ENST00000552786		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000546561	ENST00000393330		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000546561	ENST00000247829		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000546561	ENST00000546561		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000546561	ENST00000552128		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000546561	ENST00000552786		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552128	ENST00000393330		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552128	ENST00000247829		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552128	ENST00000546561		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552128	ENST00000552128		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000552128	ENST00000552786		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552786	ENST00000393330		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552786	ENST00000247829		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552786	ENST00000546561		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-3CDS	ENST00000552786	ENST00000552128		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000552786	ENST00000552786		ChiTaRS3.1			AW363859	TSPAN8	chr12	71526503	+	TSPAN8	chr12	71532003	-
intron-intron	ENST00000274456	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000274456	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000274456	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000274456	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000274456	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000274456	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000513374	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504771	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000503646	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000504642	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000554719		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000335750		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000557594		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000281127		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000428277		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-intron	ENST00000415806	ENST00000556003		ChiTaRS3.1			AW894889	TNFAIP8	chr5	118677861	+	NRXN3	chr14	80158542	+
intron-5UTR	ENST00000309311	ENST00000478253		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-5UTR	ENST00000309311	ENST00000295962		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-intron	ENST00000309311	ENST00000480457		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-5UTR	ENST00000600720	ENST00000478253		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-5UTR	ENST00000600720	ENST00000295962		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-intron	ENST00000600720	ENST00000480457		ChiTaRS3.1			T05979	EEF2	chr19	3976484	+	ABHD6	chr3	58223591	+
intron-3CDS	ENST00000513000	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000513000	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000513000	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000509777	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000509777	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000509777	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000262992	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000262992	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000262992	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000308502	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000308502	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000308502	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000508116	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000508116	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000508116	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000507861	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000507861	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000507861	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000506217	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000506217	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000506217	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-3CDS	ENST00000508084	ENST00000388825		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000508084	ENST00000521722		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-intron	ENST00000508084	ENST00000517973		ChiTaRS3.1			CB044109	INPP4B	chr4	142963356	+	GPX3	chr5	150406475	+
intron-5UTR	ENST00000364938	ENST00000337827		ChiTaRS3.1			DA649129	SNHG3	chr1	28834673	+	GALNT16	chr14	69726894	+
intron-intron	ENST00000364938	ENST00000448469		ChiTaRS3.1			DA649129	SNHG3	chr1	28834673	+	GALNT16	chr14	69726894	+
intron-intron	ENST00000364938	ENST00000553669		ChiTaRS3.1			DA649129	SNHG3	chr1	28834673	+	GALNT16	chr14	69726894	+
intron-3UTR	ENST00000364938	ENST00000554858		ChiTaRS3.1			DA649129	SNHG3	chr1	28834673	+	GALNT16	chr14	69726894	+
intron-intron	ENST00000315596	ENST00000455015		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
intron-intron	ENST00000315596	ENST00000336832		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
intron-intron	ENST00000315596	ENST00000423850		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
intron-intron	ENST00000315596	ENST00000383817		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
intron-intron	ENST00000315596	ENST00000430427		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
intron-intron	ENST00000315596	ENST00000443115		ChiTaRS3.1			BF924179	PDS5B	chr13	33346384	-	CIDEC	chr3	9986696	-
3UTR-3UTR	ENST00000380909	ENST00000380909		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000380909	ENST00000303434		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000380909	ENST00000395827		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000380909	ENST00000395829		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000303434	ENST00000380909		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000303434	ENST00000303434		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000303434	ENST00000395827		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000303434	ENST00000395829		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
intron-3UTR	ENST00000395827	ENST00000380909		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
intron-3UTR	ENST00000395827	ENST00000303434		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
intron-3UTR	ENST00000395827	ENST00000395827		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
intron-3UTR	ENST00000395827	ENST00000395829		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000395829	ENST00000380909		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000395829	ENST00000303434		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000395829	ENST00000395827		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
3UTR-3UTR	ENST00000395829	ENST00000395829		ChiTaRS3.1			BU566029	TRABD	chr22	50637923	-	TRABD	chr22	50637861	+
intron-3CDS	ENST00000357214	ENST00000360284		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-3CDS	ENST00000357214	ENST00000545748		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-3CDS	ENST00000357214	ENST00000550082		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000357214	ENST00000547206		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000357214	ENST00000243050		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000357214	ENST00000394825		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000357214	ENST00000394824		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000357214	ENST00000548232		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-3CDS	ENST00000468598	ENST00000360284		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-3CDS	ENST00000468598	ENST00000545748		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-3CDS	ENST00000468598	ENST00000550082		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000468598	ENST00000547206		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000468598	ENST00000243050		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000468598	ENST00000394825		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000468598	ENST00000394824		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
intron-intron	ENST00000468598	ENST00000548232		ChiTaRS3.1			AW614419	SFPQ	chr1	35658443	-	NR4A1	chr12	52448514	-
In-frame	ENST00000457030	ENST00000457030		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000457030	ENST00000330010		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000457030	ENST00000294624		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000457030	ENST00000334785		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000457030	ENST00000480732		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000330010	ENST00000457030		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000330010	ENST00000330010		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000330010	ENST00000294624		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000330010	ENST00000334785		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000330010	ENST00000480732		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000294624	ENST00000457030		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000294624	ENST00000330010		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000294624	ENST00000294624		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000294624	ENST00000334785		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3UTR	ENST00000294624	ENST00000480732		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000334785	ENST00000457030		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
In-frame	ENST00000334785	ENST00000330010		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000334785	ENST00000294624		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-intron	ENST00000334785	ENST00000334785		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
5CDS-3UTR	ENST00000334785	ENST00000480732		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000480732	ENST00000457030		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3CDS	ENST00000480732	ENST00000330010		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000480732	ENST00000294624		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-intron	ENST00000480732	ENST00000334785		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3UTR	ENST00000480732	ENST00000480732		ChiTaRS3.1			AW373769	NEXN	chr1	78392163	-	NEXN	chr1	78401642	-
intron-3UTR	ENST00000254658	ENST00000254658		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000254658	ENST00000254657		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000254658	ENST00000440245		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000254658	ENST00000355768		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000254657	ENST00000254658		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000254657	ENST00000254657		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000254657	ENST00000440245		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000254657	ENST00000355768		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000440245	ENST00000254658		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000440245	ENST00000254657		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000440245	ENST00000440245		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000440245	ENST00000355768		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000355768	ENST00000254658		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-3UTR	ENST00000355768	ENST00000254657		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000355768	ENST00000440245		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
intron-intron	ENST00000355768	ENST00000355768		ChiTaRS3.1			BF825009	PER2	chr2	239153978	-	PER2	chr2	239154177	+
5CDS-3UTR	ENST00000512062	ENST00000512062		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000512062	ENST00000307892		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000512062	ENST00000515314		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000512062	ENST00000561792		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000307892	ENST00000512062		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000307892	ENST00000307892		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000307892	ENST00000515314		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000307892	ENST00000561792		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000515314	ENST00000512062		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000515314	ENST00000307892		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000515314	ENST00000515314		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000515314	ENST00000561792		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000561792	ENST00000512062		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000561792	ENST00000307892		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000561792	ENST00000515314		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
5CDS-3UTR	ENST00000561792	ENST00000561792		ChiTaRS3.1			BE083129	CYB5B	chr16	69481095	-	CYB5B	chr16	69496448	+
In-frame	ENST00000258761	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000258761	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000258761	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000258761	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000258761	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000258761	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000433922	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000433922	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000433922	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000433922	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000433922	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000433922	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-3CDS	ENST00000432311	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-3CDS	ENST00000432311	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000432311	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000432311	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000432311	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000432311	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-3CDS	ENST00000452975	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-3CDS	ENST00000452975	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000452975	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000452975	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000452975	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000452975	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000405202	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000405202	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000405202	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000405202	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000405202	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000405202	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000407633	ENST00000258761		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
In-frame	ENST00000407633	ENST00000433922		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000407633	ENST00000432311		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000407633	ENST00000452975		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000407633	ENST00000405202		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
5CDS-intron	ENST00000407633	ENST00000407633		ChiTaRS3.1			C04569	BZW2	chr7	16737795	+	BZW2	chr7	16744220	-
intron-intron	ENST00000448838	ENST00000448838		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000448838	ENST00000227868		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000448838	ENST00000430469		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000448838	ENST00000477173		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000227868	ENST00000448838		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000227868	ENST00000227868		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000227868	ENST00000430469		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000227868	ENST00000477173		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000430469	ENST00000448838		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000430469	ENST00000227868		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000430469	ENST00000430469		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000430469	ENST00000477173		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000477173	ENST00000448838		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000477173	ENST00000227868		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000477173	ENST00000430469		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000477173	ENST00000477173		ChiTaRS3.1			CV360819	PDHX	chr11	34952949	-	PDHX	chr11	35006277	-
intron-intron	ENST00000482399	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000482399	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000445902	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000445902	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000478934	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000478934	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000436044	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000436044	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000448042	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000448042	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000488583	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000488583	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000441058	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000441058	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000471761	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000471761	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000443860	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000443860	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000483351	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000483351	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000383210	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000383210	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000489236	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000489236	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000485418	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000485418	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000421357	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000421357	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000428608	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000428608	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000484649	ENST00000245787		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000484649	ENST00000485520		ChiTaRS3.1			BG994619	VPS52	chr6	4712690	+	INSIG2	chr2	118861816	+
intron-intron	ENST00000398606	ENST00000492698		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398606	ENST00000252999		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398606	ENST00000370692		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398606	ENST00000370677		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398603	ENST00000492698		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398603	ENST00000252999		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398603	ENST00000370692		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000398603	ENST00000370677		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000498765	ENST00000492698		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000498765	ENST00000252999		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000498765	ENST00000370692		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
intron-intron	ENST00000498765	ENST00000370677		ChiTaRS3.1			AW206069	GSTP1	chr11	67353723	-	LAMA5	chr20	60900569	+
3UTR-3CDS	ENST00000466801	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
3UTR-3CDS	ENST00000466801	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
3UTR-intron	ENST00000466801	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409321	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409321	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
5CDS-intron	ENST00000409321	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409115	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409115	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
5CDS-intron	ENST00000409115	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000341369	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000341369	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
5CDS-intron	ENST00000341369	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409683	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000409683	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
5CDS-intron	ENST00000409683	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000410064	ENST00000320610		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
In-frame	ENST00000410064	ENST00000253159		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
5CDS-intron	ENST00000410064	ENST00000583095		ChiTaRS3.1			BE042789	PTMA	chr2	232576651	-	ZNF236	chr18	74627761	-
intron-intron	ENST00000378609	ENST00000369331		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000378609	ENST00000369321		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000378609	ENST00000345633		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000378609	ENST00000369318		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000378609	ENST00000369315		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-intron	ENST00000378609	ENST00000452490		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-intron	ENST00000378609	ENST00000468790		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-intron	ENST00000472614	ENST00000369331		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000472614	ENST00000369321		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000472614	ENST00000345633		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000472614	ENST00000369318		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-5UTR	ENST00000472614	ENST00000369315		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-intron	ENST00000472614	ENST00000452490		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
intron-intron	ENST00000472614	ENST00000468790		ChiTaRS3.1			U67319	GNB1	chr1	1812550	+	CASP7	chr10	115439699	+
3UTR-intron	ENST00000295598	ENST00000275034		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000295598	ENST00000479165		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000537345	ENST00000275034		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000537345	ENST00000479165		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000369496	ENST00000275034		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
3UTR-intron	ENST00000369496	ENST00000479165		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
intron-intron	ENST00000491156	ENST00000275034		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
intron-intron	ENST00000491156	ENST00000479165		ChiTaRS3.1			D00099	ATP1A1	chr1	116947383	+	PHIP	chr6	79735217	+
intron-intron	ENST00000403222	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000407373	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000332585	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000382310	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000446658	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000401475	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000437268	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000535268	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
intron-intron	ENST00000496575	ENST00000328649		ChiTaRS3.1			BI015769	OSBP2	chr22	31139863	-	CIB1	chr15	90775729	-
In-frame	ENST00000372484	ENST00000393054		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000372484	ENST00000310018		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000372484	ENST00000353492		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
5CDS-intron	ENST00000372484	ENST00000483139		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000354880	ENST00000393054		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000354880	ENST00000310018		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000354880	ENST00000353492		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
5CDS-intron	ENST00000354880	ENST00000483139		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000191018	ENST00000393054		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000191018	ENST00000310018		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000191018	ENST00000353492		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
5CDS-intron	ENST00000191018	ENST00000483139		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000372459	ENST00000393054		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000372459	ENST00000310018		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
In-frame	ENST00000372459	ENST00000353492		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
5CDS-intron	ENST00000372459	ENST00000483139		ChiTaRS3.1			BF823719	CTSA	chr20	44526658	-	ATP6V0A4	chr7	138406708	+
intron-3UTR	ENST00000508053	ENST00000508180		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000508053	ENST00000295461		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000262464	ENST00000508180		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000262464	ENST00000295461		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000507835	ENST00000508180		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000507835	ENST00000295461		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000508989	ENST00000508180		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000508989	ENST00000295461		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000511489	ENST00000508180		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
intron-3UTR	ENST00000511489	ENST00000295461		ChiTaRS3.1			BF991099	FBN2	chr5	127686613	+	NIPAL1	chr4	48027148	+
3UTR-intron	ENST00000452533	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000452533	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000452533	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000452533	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000452533	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000452533	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000553257	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000549701	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000358214	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000548671	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000266481	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000547312	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000414834	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000315266		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000478722		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000459628		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000543237		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000305960		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
3UTR-intron	ENST00000381000	ENST00000544752		ChiTaRS3.1			BE172739	DNM1L	chr12	32896833	-	GPHN	chr14	67625577	-
intron-intron	ENST00000356341	ENST00000341170		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000354801		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000484708		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000341170		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000354801		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000484708		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000341170		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000354801		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000484708		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000341170		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000354801		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000484708		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000341170		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000354801		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000484708		ChiTaRS3.1			AW856689	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
5CDS-intron	ENST00000531188	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000531188	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000531188	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000531188	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000530164	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000530164	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000530164	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000530164	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000278572	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000278572	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000278572	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000278572	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000534440	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000534440	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000534440	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000534440	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000527446	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000527446	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000527446	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000527446	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000526608	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000526608	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000526608	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000526608	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000524851	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000524851	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000524851	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
5CDS-intron	ENST00000524851	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
3UTR-intron	ENST00000529285	ENST00000466411		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
3UTR-intron	ENST00000529285	ENST00000435050		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
3UTR-intron	ENST00000529285	ENST00000431918		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
3UTR-intron	ENST00000529285	ENST00000340958		ChiTaRS3.1			BM844689	RPS3	chr11	75112774	+	CLDN4	chr7	73245834	+
In-frame	ENST00000379312	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000379312	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-3CDS	ENST00000566522	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-intron	ENST00000566522	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
In-frame	ENST00000042381	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000042381	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
In-frame	ENST00000540839	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000540839	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
In-frame	ENST00000422602	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000422602	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
In-frame	ENST00000428437	ENST00000455089		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000342916		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000344576		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000420316		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000275493		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000442591		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000463948		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
5CDS-intron	ENST00000428437	ENST00000454757		ChiTaRS3.1			BF844939	FAM65A	chr16	67576379	-	EGFR	chr7	55269015	-
intron-3UTR	ENST00000342287	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000342287	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000342287	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-3UTR	ENST00000373487	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373487	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373487	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-3UTR	ENST00000373489	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373489	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373489	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-3UTR	ENST00000373483	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373483	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000373483	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-3UTR	ENST00000447726	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000447726	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000447726	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-3UTR	ENST00000538998	ENST00000399788		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000538998	ENST00000540838		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000538998	ENST00000382815		ChiTaRS3.1			CD639079	PBX3	chr9	128653838	+	KDM5A	chr12	394066	-
intron-intron	ENST00000292147	ENST00000355827		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000292147	ENST00000373054		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000292147	ENST00000373061		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000292147	ENST00000373049		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000292147	ENST00000324765		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000600651	ENST00000355827		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000600651	ENST00000373054		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000600651	ENST00000373061		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000600651	ENST00000373049		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-intron	ENST00000600651	ENST00000324765		ChiTaRS3.1			CV379509	ETHE1	chr19	44012154	-	DIAPH2	chrX	96607007	-
intron-3UTR	ENST00000302386	ENST00000302386		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000302386	ENST00000577035		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000302386	ENST00000571129		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000302386	ENST00000571253		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000302386	ENST00000573928		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000577035	ENST00000302386		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000577035	ENST00000577035		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000577035	ENST00000571129		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000577035	ENST00000571253		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000577035	ENST00000573928		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000571129	ENST00000302386		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000571129	ENST00000577035		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571129	ENST00000571129		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571129	ENST00000571253		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571129	ENST00000573928		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000571253	ENST00000302386		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000571253	ENST00000577035		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571253	ENST00000571129		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571253	ENST00000571253		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000571253	ENST00000573928		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000573928	ENST00000302386		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-3UTR	ENST00000573928	ENST00000577035		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000573928	ENST00000571129		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000573928	ENST00000571253		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
intron-intron	ENST00000573928	ENST00000573928		ChiTaRS3.1			AA455489	GABARAP	chr17	7143884	-	GABARAP	chr17	7143747	+
5UTR-5UTR	ENST00000521831	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000521831	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000521831	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000521831	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000355315	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000355315	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000355315	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000355315	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000303759	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000303759	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000303759	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000303759	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000517933	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000517933	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000517933	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000517933	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000518801	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000518801	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000518801	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000518801	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523975	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523975	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523975	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000523975	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000396723	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000396723	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000396723	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000396723	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523061	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523061	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000523061	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000523061	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000521524	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000521524	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-5UTR	ENST00000521524	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
5UTR-intron	ENST00000521524	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
intron-5UTR	ENST00000519367	ENST00000316981		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
intron-5UTR	ENST00000519367	ENST00000423799		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
intron-5UTR	ENST00000519367	ENST00000429357		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
intron-intron	ENST00000519367	ENST00000519027		ChiTaRS3.1			DQ478932	CHCHD7	chr8	57124396	+	PLAG1	chr8	57083750	-
intron-intron	ENST00000303221	ENST00000398806		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000303221	ENST00000542787		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000303221	ENST00000338623		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000303221	ENST00000381163		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000303221	ENST00000381161		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000508934	ENST00000398806		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000508934	ENST00000542787		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000508934	ENST00000338623		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000508934	ENST00000381163		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000508934	ENST00000381161		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000514111	ENST00000398806		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000514111	ENST00000542787		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000514111	ENST00000338623		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000514111	ENST00000381163		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000514111	ENST00000381161		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000506190	ENST00000398806		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000506190	ENST00000542787		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000506190	ENST00000338623		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000506190	ENST00000381163		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000506190	ENST00000381161		ChiTaRS3.1			U94359	EMB	chr5	49707829	+	GYG2	chrX	2798741	+
intron-intron	ENST00000252699	ENST00000315677		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000581527		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000400147		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000400149		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000400155		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000400150		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000584874		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000534970		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000539435		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000581699		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000400145		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000515196		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000252699	ENST00000478161		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000315677		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000581527		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000400147		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000400149		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000400155		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000400150		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000584874		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000534970		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000539435		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000581699		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000400145		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000515196		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000424234	ENST00000478161		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000315677		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000581527		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000400147		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000400149		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000400155		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000400150		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000584874		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000534970		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000539435		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000581699		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000400145		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000515196		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000390009	ENST00000478161		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000315677		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000581527		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000400147		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000400149		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000400155		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000400150		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000584874		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000534970		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000539435		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000581699		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000400145		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000515196		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-intron	ENST00000497637	ENST00000478161		ChiTaRS3.1			BF813639	ACTN4	chr19	39142566	-	DLGAP1	chr18	3590659	+
intron-3UTR	ENST00000379245	ENST00000379245		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000379245	ENST00000305852		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000379245	ENST00000405912		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-5UTR	ENST00000379245	ENST00000487919		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000305852	ENST00000379245		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000305852	ENST00000305852		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000305852	ENST00000405912		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-5UTR	ENST00000305852	ENST00000487919		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000405912	ENST00000379245		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000405912	ENST00000305852		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000405912	ENST00000405912		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-5UTR	ENST00000405912	ENST00000487919		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000487919	ENST00000379245		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000487919	ENST00000305852		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-3UTR	ENST00000487919	ENST00000405912		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
intron-5UTR	ENST00000487919	ENST00000487919		ChiTaRS3.1			BE812729	FEZ2	chr2	36805773	-	FEZ2	chr2	36780243	+
5CDS-3UTR	ENST00000582888	ENST00000582888		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000582888	ENST00000602676		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000582888	ENST00000322297		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000582888	ENST00000583542		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-intron	ENST00000582888	ENST00000588673		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000602676	ENST00000582888		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000602676	ENST00000602676		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000602676	ENST00000322297		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000602676	ENST00000583542		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-intron	ENST00000602676	ENST00000588673		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000322297	ENST00000582888		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000322297	ENST00000602676		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000322297	ENST00000322297		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000322297	ENST00000583542		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-intron	ENST00000322297	ENST00000588673		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000583542	ENST00000582888		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000583542	ENST00000602676		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000583542	ENST00000322297		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000583542	ENST00000583542		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-intron	ENST00000583542	ENST00000588673		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000588673	ENST00000582888		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000588673	ENST00000602676		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000588673	ENST00000322297		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-3UTR	ENST00000588673	ENST00000583542		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
5CDS-intron	ENST00000588673	ENST00000588673		ChiTaRS3.1			BG315209	OAZ1	chr19	2271822	-	OAZ1	chr19	2273228	-
3UTR-intron	ENST00000246895	ENST00000376873		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
3UTR-intron	ENST00000246895	ENST00000299339		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
3UTR-intron	ENST00000246895	ENST00000376855		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
3UTR-intron	ENST00000381060	ENST00000376873		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
3UTR-intron	ENST00000381060	ENST00000299339		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
3UTR-intron	ENST00000381060	ENST00000376855		ChiTaRS3.1			BP333889	STATH	chr4	70868094	+	CLDN10	chr13	96103568	-
intron-3CDS	ENST00000375743	ENST00000354293		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000375743	ENST00000600199		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000375743	ENST00000359032		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-3CDS	ENST00000537142	ENST00000354293		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000537142	ENST00000600199		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000537142	ENST00000359032		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-3CDS	ENST00000375733	ENST00000354293		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000375733	ENST00000600199		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000375733	ENST00000359032		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-3CDS	ENST00000448462	ENST00000354293		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000448462	ENST00000600199		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000448462	ENST00000359032		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-3CDS	ENST00000479282	ENST00000354293		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000479282	ENST00000600199		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000479282	ENST00000359032		ChiTaRS3.1			AW472939	ZBTB17	chr1	16268491	+	AP2A1	chr19	50305032	-
intron-intron	ENST00000493331	ENST00000366197		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000493331	ENST00000597400		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000493331	ENST00000598895		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000493331	ENST00000336128		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000334575	ENST00000366197		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000334575	ENST00000597400		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000334575	ENST00000598895		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000334575	ENST00000336128		ChiTaRS3.1			AL096729	GSTA1	chr6	52663059	-	ZNF548	chr19	57913381	+
intron-intron	ENST00000406091	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000406091	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000262231	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000507740	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000522174	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
5CDS-intron	ENST00000436393	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000406091		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000262231		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000507740		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000522174		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000436393		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-intron	ENST00000339750	ENST00000339750		ChiTaRS3.1			AV745529	RIMS2	chr8	105161079	+	RIMS2	chr8	105080739	+
intron-3UTR	ENST00000376876	ENST00000177742		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000376876	ENST00000397375		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000376875	ENST00000177742		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000376875	ENST00000397375		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000317669	ENST00000177742		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000317669	ENST00000397375		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000480105	ENST00000177742		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
intron-3UTR	ENST00000480105	ENST00000397375		ChiTaRS3.1			CK819899	SLC38A5	chrX	48317315	+	MRPS34	chr16	1822017	+
3UTR-intron	ENST00000254928	ENST00000254928		ChiTaRS3.1			H48159	ERAL1	chr17	27187763	-	ERAL1	chr19	52840463	-
3UTR-intron	ENST00000254928	ENST00000578001		ChiTaRS3.1			H48159	ERAL1	chr17	27187763	-	ERAL1	chr19	52840463	-
intron-intron	ENST00000578001	ENST00000254928		ChiTaRS3.1			H48159	ERAL1	chr17	27187763	-	ERAL1	chr19	52840463	-
intron-intron	ENST00000578001	ENST00000578001		ChiTaRS3.1			H48159	ERAL1	chr17	27187763	-	ERAL1	chr19	52840463	-
intron-intron	ENST00000171887	ENST00000392272		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000171887	ENST00000368173		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000171887	ENST00000360089		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000171887	ENST00000359209		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000171887	ENST00000416935		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000171887	ENST00000368172		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000392272		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000368173		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000360089		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000359209		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000416935		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000419504	ENST00000368172		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000392272		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000368173		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000360089		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000359209		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000416935		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000430930	ENST00000368172		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000392272		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000368173		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000360089		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000359209		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000416935		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000310858	ENST00000368172		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000392272		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000368173		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000360089		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000359209		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000416935		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
intron-intron	ENST00000480665	ENST00000368172		ChiTaRS3.1			BF875129	TNS1	chr2	218730221	-	KIRREL	chr1	158060830	-
3UTR-intron	ENST00000360639	ENST00000358409		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000360639	ENST00000359864		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000360639	ENST00000397122		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000394987	ENST00000358409		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000394987	ENST00000359864		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000394987	ENST00000397122		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000567617	ENST00000358409		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000567617	ENST00000359864		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
3UTR-intron	ENST00000567617	ENST00000397122		ChiTaRS3.1			AI952989	C15orf39	chr15	75504138	-	TEAD4	chr12	3149907	-
intron-3CDS	ENST00000526148	ENST00000526148		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000525681		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000339995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000396525		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000526148		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000525681		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000339995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000396525		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000526148		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000525681		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000339995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000396525		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000526148		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000525681		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000339995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000396525		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000526148		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000525681		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000339995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000396525		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			AW948789	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000233838	ENST00000233838		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3CDS	ENST00000233838	ENST00000430215		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-intron	ENST00000233838	ENST00000473665		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3CDS	ENST00000430215	ENST00000233838		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3CDS	ENST00000430215	ENST00000430215		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-intron	ENST00000430215	ENST00000473665		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3CDS	ENST00000473665	ENST00000233838		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3CDS	ENST00000473665	ENST00000430215		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-intron	ENST00000473665	ENST00000473665		ChiTaRS3.1			BE073949	GGCX	chr2	85779608	-	GGCX	chr2	85779567	+
intron-3UTR	ENST00000377669	ENST00000377669		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000377669	ENST00000377666		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000377669	ENST00000472022		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-3UTR	ENST00000377666	ENST00000377669		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000377666	ENST00000377666		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000377666	ENST00000472022		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-3UTR	ENST00000472022	ENST00000377669		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000472022	ENST00000377666		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000472022	ENST00000472022		ChiTaRS3.1			AI342559	KLF12	chr13	74261776	+	KLF12	chr13	74261709	-
intron-intron	ENST00000461471	ENST00000405805		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000339872		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000341423		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000399489		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000399494		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000326004		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000461471	ENST00000468384		ChiTaRS3.1			AI125119	OR2A9P	chr7	144051921	+	HMGB1	chr13	31063904	-
intron-intron	ENST00000546088	ENST00000546088		ChiTaRS3.1			AI282819	TAF1D	chr11	93472454	+	TAF1D	chr11	93470381	+
intron-intron	ENST00000546088	ENST00000448108		ChiTaRS3.1			AI282819	TAF1D	chr11	93472454	+	TAF1D	chr11	93470381	+
intron-intron	ENST00000448108	ENST00000546088		ChiTaRS3.1			AI282819	TAF1D	chr11	93472454	+	TAF1D	chr11	93470381	+
intron-intron	ENST00000448108	ENST00000448108		ChiTaRS3.1			AI282819	TAF1D	chr11	93472454	+	TAF1D	chr11	93470381	+
intron-3CDS	ENST00000574590	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000574590	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000575318	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000575318	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000572904	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000572904	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000262419	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000262419	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000432791	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000432791	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000393476	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000393476	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-3CDS	ENST00000576248	ENST00000574590		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000575318		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000572904		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000262419		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000432791		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000393476		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000576248	ENST00000576248		ChiTaRS3.1			BM681439	KANSL1	chr17	44115883	+	KANSL1	chr17	44116562	-
intron-intron	ENST00000578312	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000578312	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000578312	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000262394	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000262394	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000262394	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000579733	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000579733	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000579733	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000583193	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000583193	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000583193	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000581185	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000581185	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000581185	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000427287	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000427287	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
5CDS-intron	ENST00000427287	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000348811	ENST00000396659		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000348811	ENST00000558336		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000348811	ENST00000458245		ChiTaRS3.1			AW861199	WSB1	chr17	25630602	+	GATM	chr15	45657914	-
intron-intron	ENST00000296444	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000296444	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000296444	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000296444	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000296444	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000296444	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000444115	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000444115	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000444115	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000444115	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000444115	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000444115	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000426002	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000426002	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000426002	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000426002	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000426002	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000426002	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000465449	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000465449	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000465449	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000465449	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000465449	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000465449	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000442747	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000442747	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000442747	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000442747	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000442747	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000442747	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000443308	ENST00000296444		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000443308	ENST00000444115		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-5UTR	ENST00000443308	ENST00000426002		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000443308	ENST00000465449		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000443308	ENST00000442747		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
intron-intron	ENST00000443308	ENST00000443308		ChiTaRS3.1			AI684459	SHISA5	chr3	48509422	+	SHISA5	chr3	48514464	-
5CDS-intron	ENST00000265113	ENST00000361384		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
5CDS-intron	ENST00000265113	ENST00000369305		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
5CDS-intron	ENST00000265113	ENST00000476112		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
3UTR-intron	ENST00000506725	ENST00000361384		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
3UTR-intron	ENST00000506725	ENST00000369305		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
3UTR-intron	ENST00000506725	ENST00000476112		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
5CDS-intron	ENST00000381918	ENST00000361384		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
5CDS-intron	ENST00000381918	ENST00000369305		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
5CDS-intron	ENST00000381918	ENST00000476112		ChiTaRS3.1			DA111529	SLC1A3	chr5	36608652	+	DCLRE1A	chr10	115614170	-
intron-3CDS	ENST00000357037	ENST00000301200		ChiTaRS3.1			AI832159	PTRF	chr17	40575261	+	CDC42EP5	chr19	54984412	-
intron-intron	ENST00000357037	ENST00000472703		ChiTaRS3.1			AI832159	PTRF	chr17	40575261	+	CDC42EP5	chr19	54984412	-
intron-3CDS	ENST00000412585	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-3CDS	ENST00000425848	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-3CDS	ENST00000450871	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-3CDS	ENST00000359635	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-3CDS	ENST00000435618	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-3CDS	ENST00000421349	ENST00000225426		ChiTaRS3.1			BP387669	HLA-B	chr6	2655820	+	PSMB3	chr17	36916716	+
intron-intron	ENST00000344302	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000344302	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000344302	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000344302	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000344302	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000360017	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000360017	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000360017	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000360017	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000360017	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000298190	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000298190	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000298190	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000298190	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000298190	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000377919	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000377919	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000377919	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000377919	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000377919	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000478600	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000478600	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000478600	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000478600	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000478600	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000487081	ENST00000368919		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000487081	ENST00000330550		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000487081	ENST00000439654		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000487081	ENST00000456137		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000487081	ENST00000461487		ChiTaRS3.1			AA825959	KRBOX4	chrX	46313789	-	SLC22A16	chr6	110761607	+
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850059	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850059	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850059	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850059	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000455789	ENST00000377110		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000377111		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000377105		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000377106		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000360823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000357533		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000396285		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000358082		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000396292		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000408909		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000396280		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000423814		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000377101		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000396283		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000361823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000377097		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000455789	ENST00000437699		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377110		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377111		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377105		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377106		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000360823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000357533		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000396285		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000358082		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000396292		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000408909		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000396280		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000423814		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377101		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000396283		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000361823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000377097		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000310015	ENST00000437699		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377110		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377111		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377105		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377106		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000360823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000357533		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000396285		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000358082		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000396292		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000408909		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000396280		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000423814		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377101		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000396283		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000361823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000377097		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000418194	ENST00000437699		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377110		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377111		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377105		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377106		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000360823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000357533		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000396285		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000358082		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000396292		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000408909		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000396280		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000423814		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377101		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000396283		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000361823		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000377097		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
intron-intron	ENST00000483084	ENST00000437699		ChiTaRS3.1			AW367819	SP3	chr2	174820599	-	TRPM3	chr9	73943932	-
3UTR-3UTR	ENST00000261769	ENST00000261769		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
3UTR-intron	ENST00000261769	ENST00000422392		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
3UTR-intron	ENST00000261769	ENST00000562836		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-3UTR	ENST00000422392	ENST00000261769		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-intron	ENST00000422392	ENST00000422392		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-intron	ENST00000422392	ENST00000562836		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-3UTR	ENST00000562836	ENST00000261769		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-intron	ENST00000562836	ENST00000422392		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-intron	ENST00000562836	ENST00000562836		ChiTaRS3.1			BF771649	CDH1	chr16	68868453	-	CDH1	chr16	68868806	+
intron-intron	ENST00000360319	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000360319	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000422373	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000422373	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369850	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369850	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369856	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000369856	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000344736	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000344736	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000498491	ENST00000366691		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000498491	ENST00000493528		ChiTaRS3.1			BF846139	FLNA	chrX	153589933	+	RHOU	chr1	228876139	-
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-3UTR	ENST00000548589	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000552699	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000267115	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000549385	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000423828	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000395006	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000552699		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000549385		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000395006		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
3UTR-3UTR	ENST00000547798	ENST00000547798		ChiTaRS3.1			W28869	TMBIM6	chr12	50156865	-	TMBIM6	chr12	50157021	+
intron-intron	ENST00000390548	ENST00000464356		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000390548	ENST00000348159		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000390548	ENST00000353795		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000390548	ENST00000340875		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000390548	ENST00000368240		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000390548	ENST00000360595		ChiTaRS3.1			AV700979	IGHG1	chr14	106134738	+	MEF2D	chr1	156447367	+
intron-intron	ENST00000554719	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000554719	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000554719	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000554719	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000335750	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000335750	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000335750	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000335750	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000557594	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000557594	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000557594	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000557594	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000281127	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000281127	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000281127	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000281127	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000428277	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000428277	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000428277	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000428277	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000556003	ENST00000331495		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000556003	ENST00000328118		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000556003	ENST00000592006		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
intron-intron	ENST00000556003	ENST00000587489		ChiTaRS3.1			AA961679	NRXN3	chr14	80287292	-	FMNL1	chr17	43321086	-
3UTR-3UTR	ENST00000326624	ENST00000326624		ChiTaRS3.1			AA837749	ZBTB33	chrX	119392125	+	ZBTB33	chrX	119392203	-
3UTR-intron	ENST00000326624	ENST00000557385		ChiTaRS3.1			AA837749	ZBTB33	chrX	119392125	+	ZBTB33	chrX	119392203	-
intron-3UTR	ENST00000557385	ENST00000326624		ChiTaRS3.1			AA837749	ZBTB33	chrX	119392125	+	ZBTB33	chrX	119392203	-
intron-intron	ENST00000557385	ENST00000557385		ChiTaRS3.1			AA837749	ZBTB33	chrX	119392125	+	ZBTB33	chrX	119392203	-
intron-intron	ENST00000355683	ENST00000313143		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000355683	ENST00000431765		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000355683	ENST00000462665		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000357479	ENST00000313143		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000357479	ENST00000431765		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000357479	ENST00000462665		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000366206	ENST00000313143		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000366206	ENST00000431765		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000366206	ENST00000462665		ChiTaRS3.1			BF369139	STRN3	chr14	31458100	+	DVL3	chr3	183875596	-
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082259	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000373803	ENST00000389709		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000373803	ENST00000336332		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000359675	ENST00000389709		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000359675	ENST00000336332		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000349004	ENST00000389709		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000349004	ENST00000336332		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000373773	ENST00000389709		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000373773	ENST00000336332		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000540765	ENST00000389709		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-intron	ENST00000540765	ENST00000336332		ChiTaRS3.1			AA845639	NDRG3	chr20	35280577	+	ZXDC	chr3	126171895	+
intron-3UTR	ENST00000340573	ENST00000340573		ChiTaRS3.1			AA480609	UBE2L6	chr11	57319912	-	UBE2L6	chr11	57319139	+
intron-intron	ENST00000340573	ENST00000287156		ChiTaRS3.1			AA480609	UBE2L6	chr11	57319912	-	UBE2L6	chr11	57319139	+
intron-3UTR	ENST00000287156	ENST00000340573		ChiTaRS3.1			AA480609	UBE2L6	chr11	57319912	-	UBE2L6	chr11	57319139	+
intron-intron	ENST00000287156	ENST00000287156		ChiTaRS3.1			AA480609	UBE2L6	chr11	57319912	-	UBE2L6	chr11	57319139	+
Frame-shit	ENST00000395135	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000395135	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395135	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395135	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395135	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395135	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000395132	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000395132	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395132	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395132	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395132	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000395132	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000268059	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000268059	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268059	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268059	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268059	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268059	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000354026	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000354026	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000354026	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000354026	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000354026	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000354026	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000268058	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000268058	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268058	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268058	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268058	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000268058	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000565898	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000565898	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000565898	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000565898	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000565898	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000565898	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000569477	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000569477	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569477	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569477	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569477	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569477	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000569965	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000569965	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569965	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569965	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569965	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000569965	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000567543	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000567543	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000567543	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000567543	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000567543	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000567543	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000435786	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000435786	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000435786	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000435786	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000435786	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000435786	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000436891	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000436891	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000436891	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000436891	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000436891	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000436891	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000564428	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000564428	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000564428	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000564428	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000564428	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000564428	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000359928	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000359928	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000359928	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000359928	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000359928	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000359928	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000563500	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
Frame-shit	ENST00000563500	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000563500	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000563500	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000563500	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
5CDS-intron	ENST00000563500	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-3CDS	ENST00000569161	ENST00000254066		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-3CDS	ENST00000569161	ENST00000394089		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-intron	ENST00000569161	ENST00000425707		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-intron	ENST00000569161	ENST00000394086		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-intron	ENST00000569161	ENST00000394081		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
3UTR-intron	ENST00000569161	ENST00000420042		ChiTaRS3.1			EF535849	PML	chr15	74317268	+	RARA	chr17	38504567	+
intron-3CDS	ENST00000521308	ENST00000239223		ChiTaRS3.1			AK127679	CCDC69	chr5	150603668	+	DUSP1	chr5	172197634	-
intron-3CDS	ENST00000355417	ENST00000239223		ChiTaRS3.1			AK127679	CCDC69	chr5	150603668	+	DUSP1	chr5	172197634	-
3UTR-intron	ENST00000296755	ENST00000369536		ChiTaRS3.1			BE765789	MAP1B	chr5	71502569	+	RARS2	chr6	88252048	-
3UTR-intron	ENST00000296755	ENST00000497828		ChiTaRS3.1			BE765789	MAP1B	chr5	71502569	+	RARS2	chr6	88252048	-
intron-intron	ENST00000504183	ENST00000369536		ChiTaRS3.1			BE765789	MAP1B	chr5	71502569	+	RARS2	chr6	88252048	-
intron-intron	ENST00000504183	ENST00000497828		ChiTaRS3.1			BE765789	MAP1B	chr5	71502569	+	RARS2	chr6	88252048	-
intron-3CDS	ENST00000374094	ENST00000447857		ChiTaRS3.1			AK128169	AGAP5	chr10	75492167	+	CCDC155	chr19	49897800	+
intron-intron	ENST00000374094	ENST00000593725		ChiTaRS3.1			AK128169	AGAP5	chr10	75492167	+	CCDC155	chr19	49897800	+
intron-3CDS	ENST00000443782	ENST00000447857		ChiTaRS3.1			AK128169	AGAP5	chr10	75492167	+	CCDC155	chr19	49897800	+
intron-intron	ENST00000443782	ENST00000593725		ChiTaRS3.1			AK128169	AGAP5	chr10	75492167	+	CCDC155	chr19	49897800	+
In-frame	ENST00000361804	ENST00000361804		ChiTaRS3.1			BG943879	SMC3	chr10	112361525	+	SMC3	chr10	112340669	+
5CDS-3UTR	ENST00000361804	ENST00000462899		ChiTaRS3.1			BG943879	SMC3	chr10	112361525	+	SMC3	chr10	112340669	+
intron-3CDS	ENST00000462899	ENST00000361804		ChiTaRS3.1			BG943879	SMC3	chr10	112361525	+	SMC3	chr10	112340669	+
intron-3UTR	ENST00000462899	ENST00000462899		ChiTaRS3.1			BG943879	SMC3	chr10	112361525	+	SMC3	chr10	112340669	+
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266522	EWSR1	chr22	29684445	+	FLI1	chr11	128660603	+
intron-intron	ENST00000233813	ENST00000202677		ChiTaRS3.1			BI053329	IGFBP5	chr2	217541113	-	RALGAPA2	chr20	20500085	-
intron-intron	ENST00000233813	ENST00000495793		ChiTaRS3.1			BI053329	IGFBP5	chr2	217541113	-	RALGAPA2	chr20	20500085	-
3UTR-intron	ENST00000469172	ENST00000367435		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
3UTR-intron	ENST00000469172	ENST00000477868		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000265866	ENST00000367435		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000265866	ENST00000477868		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000441000	ENST00000367435		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000441000	ENST00000477868		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000354695	ENST00000367435		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
5CDS-intron	ENST00000354695	ENST00000477868		ChiTaRS3.1			BF903149	HNRNPH3	chr10	70101025	-	CDC73	chr1	193108599	+
3UTR-3CDS	ENST00000377351	ENST00000377351		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-3CDS	ENST00000377351	ENST00000335972		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000377351	ENST00000490869		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000377351	ENST00000377269		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-3CDS	ENST00000335972	ENST00000377351		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-3CDS	ENST00000335972	ENST00000335972		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000335972	ENST00000490869		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000335972	ENST00000377269		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
intron-3CDS	ENST00000490869	ENST00000377351		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
intron-3CDS	ENST00000490869	ENST00000335972		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
intron-intron	ENST00000490869	ENST00000490869		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
intron-intron	ENST00000490869	ENST00000377269		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-3CDS	ENST00000377269	ENST00000377351		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-3CDS	ENST00000377269	ENST00000335972		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000377269	ENST00000490869		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
3UTR-intron	ENST00000377269	ENST00000377269		ChiTaRS3.1			BE089899	UBA1	chrX	47074329	+	UBA1	chrX	47070491	+
intron-3UTR	ENST00000296328	ENST00000053867		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000296328	ENST00000589265		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-intron	ENST00000296328	ENST00000589923		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000428095	ENST00000053867		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000428095	ENST00000589265		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-intron	ENST00000428095	ENST00000589923		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000535858	ENST00000053867		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000535858	ENST00000589265		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-intron	ENST00000535858	ENST00000589923		ChiTaRS3.1			BQ309239	UBXN7	chr3	196082351	+	GRN	chr17	42430363	+
intron-3UTR	ENST00000375533	ENST00000375001		ChiTaRS3.1			AI682969	BAMBI	chr10	28970913	+	COL15A1	chr9	101832738	+
intron-intron	ENST00000375533	ENST00000467052		ChiTaRS3.1			AI682969	BAMBI	chr10	28970913	+	COL15A1	chr9	101832738	+
5CDS-5UTR	ENST00000381341	ENST00000344063		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000381341	ENST00000431533		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000381341	ENST00000428193		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000381341	ENST00000558815		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000381341	ENST00000560583		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000381341	ENST00000560055		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000381341	ENST00000559463		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000381341	ENST00000558131		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000381341	ENST00000558752		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000381341	ENST00000458349		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000344063		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000431533		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000428193		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000558815		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000560583		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-5UTR	ENST00000233084	ENST00000560055		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000233084	ENST00000559463		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000233084	ENST00000558131		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000233084	ENST00000558752		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
5CDS-intron	ENST00000233084	ENST00000458349		ChiTaRS3.1			BG473709	DDX1	chr2	15760492	-	RPL28	chr19	55897300	+
intron-3CDS	ENST00000460721	ENST00000360184		ChiTaRS3.1			DR978379	LDOC1	chrX	140271096	+	DYNC1H1	chr14	102431175	+
intron-intron	ENST00000460721	ENST00000556791		ChiTaRS3.1			DR978379	LDOC1	chrX	140271096	+	DYNC1H1	chr14	102431175	+
intron-3CDS	ENST00000370526	ENST00000360184		ChiTaRS3.1			DR978379	LDOC1	chrX	140271096	+	DYNC1H1	chr14	102431175	+
intron-intron	ENST00000370526	ENST00000556791		ChiTaRS3.1			DR978379	LDOC1	chrX	140271096	+	DYNC1H1	chr14	102431175	+
intron-intron	ENST00000319670	ENST00000318560		ChiTaRS3.1			CV376479	ARHGEF18	chr19	7471251	-	ABL1	chr9	133720981	-
intron-intron	ENST00000359920	ENST00000318560		ChiTaRS3.1			CV376479	ARHGEF18	chr19	7471251	-	ABL1	chr9	133720981	-
5CDS-intron	ENST00000399448	ENST00000455015		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000399448	ENST00000336832		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000399448	ENST00000423850		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000399448	ENST00000383817		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000399448	ENST00000430427		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000399448	ENST00000443115		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000455015		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000336832		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000423850		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000383817		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000430427		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000447931	ENST00000443115		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000455015		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000336832		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000423850		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000383817		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000430427		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000318974	ENST00000443115		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000455015		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000336832		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000423850		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000383817		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000430427		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
5CDS-intron	ENST00000456013	ENST00000443115		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000455015		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000336832		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000423850		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000383817		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000430427		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-intron	ENST00000539029	ENST00000443115		ChiTaRS3.1			BE935009	PTPN6	chr12	7064648	+	CIDEC	chr3	10035912	+
intron-5UTR	ENST00000527132	ENST00000527132		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000527132	ENST00000396505		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000527132	ENST00000326932		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000527132	ENST00000525493		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000527132	ENST00000450094		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000396505	ENST00000527132		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000396505	ENST00000396505		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000396505	ENST00000326932		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000396505	ENST00000525493		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000396505	ENST00000450094		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000326932	ENST00000527132		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000326932	ENST00000396505		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000326932	ENST00000326932		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000326932	ENST00000525493		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000326932	ENST00000450094		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000525493	ENST00000527132		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000525493	ENST00000396505		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000525493	ENST00000326932		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000525493	ENST00000525493		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000525493	ENST00000450094		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000450094	ENST00000527132		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000450094	ENST00000396505		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000450094	ENST00000326932		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000450094	ENST00000525493		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000450094	ENST00000450094		ChiTaRS3.1			BE812829	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000485577	ENST00000485577		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000485577	ENST00000393313		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000485577	ENST00000265827		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000485577	ENST00000393312		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000393313	ENST00000485577		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000393313	ENST00000393313		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000393313	ENST00000265827		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000393313	ENST00000393312		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000265827	ENST00000485577		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000265827	ENST00000393313		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000265827	ENST00000265827		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000265827	ENST00000393312		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000393312	ENST00000485577		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000393312	ENST00000393313		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000393312	ENST00000265827		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-intron	ENST00000393312	ENST00000393312		ChiTaRS3.1			BG925109	ZNF800	chr7	127011693	+	ZNF800	chr7	127011573	-
intron-3UTR	ENST00000299441	ENST00000542070		ChiTaRS3.1			AW662019	DCHS1	chr11	6642630	+	LINC00442	chr13	19582897	-
intron-3UTR	ENST00000299441	ENST00000456737		ChiTaRS3.1			AW662019	DCHS1	chr11	6642630	+	LINC00442	chr13	19582897	-
intron-3UTR	ENST00000299441	ENST00000428086		ChiTaRS3.1			AW662019	DCHS1	chr11	6642630	+	LINC00442	chr13	19582897	-
intron-intron	ENST00000448775	ENST00000595437		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000448775	ENST00000376586		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000448775	ENST00000319562		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000448775	ENST00000376581		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000448775	ENST00000593990		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000530371	ENST00000595437		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000530371	ENST00000376586		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000530371	ENST00000319562		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000530371	ENST00000376581		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
intron-intron	ENST00000530371	ENST00000593990		ChiTaRS3.1			H59769	CLMP	chr11	122950461	-	FARP1	chr13	98816254	+
5CDS-3UTR	ENST00000376929	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000376929	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000376929	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-3UTR	ENST00000506690	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-intron	ENST00000506690	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-intron	ENST00000506690	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-3UTR	ENST00000389805	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000389805	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000389805	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-3UTR	ENST00000402874	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000402874	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000402874	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-3UTR	ENST00000510187	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-intron	ENST00000510187	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
intron-intron	ENST00000510187	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-3UTR	ENST00000360718	ENST00000406875		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000360718	ENST00000428878		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000360718	ENST00000342645		ChiTaRS3.1			BP396289	SQSTM1	chr5	179260654	-	HIPK2	chr7	139246400	-
5CDS-intron	ENST00000298875	ENST00000295951		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000416870		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000295952		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000383718		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000428312		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000449503		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000472546		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000442599		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000495364		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
5CDS-intron	ENST00000298875	ENST00000494088		ChiTaRS3.1			AW802849	CPSF2	chr14	92625545	-	SLMAP	chr3	57831057	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			BE464869	IGHG1	chr14	106320371	+	IGHG1	chr14	106321176	-
intron-intron	ENST00000398051	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398051	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000398052	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000504933	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000345167	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000503518	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000442472	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000398051		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000398052		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000504933		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000345167		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000503518		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000442472		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-intron	ENST00000509545	ENST00000509545		ChiTaRS3.1			BF329649	GRK4	chr4	3023248	+	GRK4	chr4	3023346	-
intron-3UTR	ENST00000350997	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000350997	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000350997	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000350997	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000350997	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000350997	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000536991	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000536991	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000536991	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000536991	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000536991	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000536991	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000433932	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000433932	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000433932	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000433932	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000433932	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000433932	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000460649	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000460649	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000460649	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000460649	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000460649	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000460649	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000542506	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000542506	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000542506	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000542506	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000542506	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000542506	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000541683	ENST00000282120		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000541683	ENST00000377386		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-3UTR	ENST00000541683	ENST00000398263		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000541683	ENST00000409232		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000541683	ENST00000409015		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000541683	ENST00000444342		ChiTaRS3.1			CB143399	FADS1	chr11	61569629	+	TGOLN2	chr2	85545424	-
intron-intron	ENST00000357037	ENST00000458578		ChiTaRS3.1			BE811869	PTRF	chr17	40556174	+	UBE2L3	chr22	21976667	-
intron-3UTR	ENST00000357037	ENST00000342192		ChiTaRS3.1			BE811869	PTRF	chr17	40556174	+	UBE2L3	chr22	21976667	-
intron-intron	ENST00000357037	ENST00000545681		ChiTaRS3.1			BE811869	PTRF	chr17	40556174	+	UBE2L3	chr22	21976667	-
Frame-shit	ENST00000356956	ENST00000510514		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
Frame-shit	ENST00000356956	ENST00000555236		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
Frame-shit	ENST00000356956	ENST00000434623		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
Frame-shit	ENST00000356956	ENST00000374525		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
Frame-shit	ENST00000356956	ENST00000259318		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
5CDS-3UTR	ENST00000356956	ENST00000482335		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3CDS	ENST00000475584	ENST00000510514		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3CDS	ENST00000475584	ENST00000555236		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3CDS	ENST00000475584	ENST00000434623		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3CDS	ENST00000475584	ENST00000374525		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3CDS	ENST00000475584	ENST00000259318		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-3UTR	ENST00000475584	ENST00000482335		ChiTaRS3.1			BF956989	IGF2R	chr6	160500762	-	AKAP2	chr9	112900636	+
intron-intron	ENST00000373547	ENST00000369902		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373547	ENST00000369899		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373547	ENST00000423559		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373547	ENST00000471000		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000415905	ENST00000369902		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000415905	ENST00000369899		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000415905	ENST00000423559		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000415905	ENST00000471000		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000451402	ENST00000369902		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000451402	ENST00000369899		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000451402	ENST00000423559		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000451402	ENST00000471000		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373546	ENST00000369902		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373546	ENST00000369899		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373546	ENST00000423559		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
intron-intron	ENST00000373546	ENST00000471000		ChiTaRS3.1			M78879	PPP6C	chr9	127933724	-	SUFU	chr10	104363497	-
3UTR-3UTR	ENST00000302754	ENST00000401084		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000264203		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000375142		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000433834		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000264202		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000482808		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000375144		ChiTaRS3.1			BI712549	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
intron-intron	ENST00000370706	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370706	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370706	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000370706	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370706	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370706	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370706	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000357489	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000357489	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000491832	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000491832	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-3UTR	ENST00000370708	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
3UTR-intron	ENST00000370708	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000370702	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370702	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000370710	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000370710	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000370706		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000357489		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000491832		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-3UTR	ENST00000510989	ENST00000370708		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000370702		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000370710		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
intron-intron	ENST00000510989	ENST00000510989		ChiTaRS3.1			AA489269	ZNF451	chr6	56972998	-	ZNF451	chr6	56973019	+
5CDS-intron	ENST00000258975	ENST00000390548		ChiTaRS3.1			AF090929	TACO1	chr17	61685725	+	IGHG1	chr2	90315606	-
5CDS-intron	ENST00000373823	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373823	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373823	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373808	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373808	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373808	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000436847	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000436847	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000436847	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000449733	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000449733	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000449733	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000412819	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000412819	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000412819	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000394353	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000394353	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000394353	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000341272	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000341272	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000341272	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000545652	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000545652	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000545652	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373818	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373818	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373818	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000485767	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000485767	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000485767	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000373807	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000373807	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
intron-intron	ENST00000373807	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373806	ENST00000343882		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373806	ENST00000406360		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
5CDS-intron	ENST00000373806	ENST00000540898		ChiTaRS3.1			AA460379	GSN	chr9	124094859	-	FOXO3	chr6	108908770	-
Frame-shit	ENST00000318522	ENST00000318522		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
Frame-shit	ENST00000318522	ENST00000402711		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000318522	ENST00000482660		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000318522	ENST00000401738		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000318522	ENST00000453191		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
Frame-shit	ENST00000402711	ENST00000318522		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
Frame-shit	ENST00000402711	ENST00000402711		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000402711	ENST00000482660		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000402711	ENST00000401738		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000402711	ENST00000453191		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-3CDS	ENST00000482660	ENST00000318522		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-3CDS	ENST00000482660	ENST00000402711		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000482660	ENST00000482660		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000482660	ENST00000401738		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000482660	ENST00000453191		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
Frame-shit	ENST00000401738	ENST00000318522		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
Frame-shit	ENST00000401738	ENST00000402711		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000401738	ENST00000482660		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000401738	ENST00000401738		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
5CDS-intron	ENST00000401738	ENST00000453191		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-3CDS	ENST00000453191	ENST00000318522		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-3CDS	ENST00000453191	ENST00000402711		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000453191	ENST00000482660		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000453191	ENST00000401738		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000453191	ENST00000453191		ChiTaRS3.1			BU687309	EML4	chr2	42483696	-	EML4	chr2	42553317	-
intron-intron	ENST00000544604	ENST00000544604		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000544604	ENST00000332811		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000544604	ENST00000402174		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000544604	ENST00000406323		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000332811	ENST00000544604		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000332811	ENST00000332811		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000332811	ENST00000402174		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000332811	ENST00000406323		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000402174	ENST00000544604		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000402174	ENST00000332811		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000402174	ENST00000402174		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000402174	ENST00000406323		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000406323	ENST00000544604		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000406323	ENST00000332811		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000406323	ENST00000402174		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
intron-intron	ENST00000406323	ENST00000406323		ChiTaRS3.1			BE148489	ZNRF3	chr22	29282842	-	ZNRF3	chr22	29284163	-
5CDS-intron	ENST00000326639	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000326639	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000264584	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000441387	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5UTR-intron	ENST00000354456	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
intron-intron	ENST00000506199	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000512292	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000394288	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000432347	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000326639		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000264584		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000441387		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000354456		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000506199		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000512292		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000394288		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000432347		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
5CDS-intron	ENST00000427266	ENST00000427266		ChiTaRS3.1			AI652589	LARP1B	chr4	129012262	-	LARP1B	chr4	129097226	-
3UTR-3UTR	ENST00000377403	ENST00000377403		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
3UTR-intron	ENST00000377403	ENST00000602477		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
3UTR-intron	ENST00000377403	ENST00000495451		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-3UTR	ENST00000602477	ENST00000377403		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-intron	ENST00000602477	ENST00000602477		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-intron	ENST00000602477	ENST00000495451		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-3UTR	ENST00000495451	ENST00000377403		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-intron	ENST00000495451	ENST00000602477		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-intron	ENST00000495451	ENST00000495451		ChiTaRS3.1			AA343949	H6PD	chr1	9330918	+	H6PD	chr1	9328817	+
intron-3UTR	ENST00000367739	ENST00000256689		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367739	ENST00000551374		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367739	ENST00000547252		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000543628	ENST00000256689		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000543628	ENST00000551374		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000543628	ENST00000547252		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000367735	ENST00000256689		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367735	ENST00000551374		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000367735	ENST00000547252		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-3UTR	ENST00000478333	ENST00000256689		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000478333	ENST00000551374		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000478333	ENST00000547252		ChiTaRS3.1			AF116669	IFNGR1	chr6	137519182	+	SLC38A2	chr12	46752830	-
intron-intron	ENST00000568104	ENST00000295951		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000416870		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000295952		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000383718		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000428312		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000449503		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000472546		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000442599		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000495364		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000568104	ENST00000494088		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000295951		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000416870		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000295952		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000383718		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000428312		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000449503		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000472546		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000442599		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000495364		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000245157	ENST00000494088		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000295951		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000416870		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000295952		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000383718		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000428312		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000449503		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000472546		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000442599		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000495364		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-intron	ENST00000561951	ENST00000494088		ChiTaRS3.1			BF885209	BBS2	chr16	56532429	-	SLMAP	chr3	57910560	-
intron-3CDS	ENST00000421182	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000421182	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000421182	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000421182	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357867	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000357867	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000357867	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000323926	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000323926	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000323926	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000336916	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000336916	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000336916	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000354785	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000354785	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000354785	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000357009	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000357009	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000357009	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000346544	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000346544	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000346544	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000345488	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000345488	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000345488	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000359671	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000359671	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000359671	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000446046	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000446046	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000446046	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000443816	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000443816	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000443816	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000432072	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000432072	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000432072	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000356005	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000356005	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000356005	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000490833	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000490833	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000490833	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000421182		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000357867		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000323926		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000336916		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000354785		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000357009		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000346544		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000345488		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000359671		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000446046		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000443816		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000432072		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-3CDS	ENST00000426059	ENST00000356005		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000426059	ENST00000490833		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000426059	ENST00000426059		ChiTaRS3.1			AI750879	FN1	chr2	216240444	+	FN1	chr2	216240376	-
intron-intron	ENST00000529615	ENST00000529615		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000529615	ENST00000328697		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000529615	ENST00000317945		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000328697	ENST00000529615		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000328697	ENST00000328697		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000328697	ENST00000317945		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000317945	ENST00000529615		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000317945	ENST00000328697		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-intron	ENST00000317945	ENST00000317945		ChiTaRS3.1			CA416029	CCDC34	chr11	27384483	+	CCDC34	chr11	27362938	+
intron-3UTR	ENST00000268035	ENST00000534336		ChiTaRS3.1			BE173369	IGF1R	chr15	99368946	-	MALAT1	chr11	65268278	+
intron-3UTR	ENST00000558762	ENST00000534336		ChiTaRS3.1			BE173369	IGF1R	chr15	99368946	-	MALAT1	chr11	65268278	+
intron-3UTR	ENST00000560432	ENST00000534336		ChiTaRS3.1			BE173369	IGF1R	chr15	99368946	-	MALAT1	chr11	65268278	+
intron-intron	ENST00000315289	ENST00000528896		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000315289	ENST00000544884		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000315289	ENST00000389003		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000315289	ENST00000579924		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395265	ENST00000528896		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395265	ENST00000544884		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395265	ENST00000389003		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395265	ENST00000579924		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000373789	ENST00000528896		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000373789	ENST00000544884		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000373789	ENST00000389003		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000373789	ENST00000579924		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395260	ENST00000528896		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395260	ENST00000544884		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395260	ENST00000389003		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-intron	ENST00000395260	ENST00000579924		ChiTaRS3.1			BF853289	RTKN2	chr10	63986787	+	KIAA0100	chr17	26966177	+
intron-3UTR	ENST00000543252	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000543252	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000543252	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000543252	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000344138	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000344138	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000344138	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000344138	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000540310	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000540310	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000540310	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000540310	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000478445	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000478445	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000478445	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000478445	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000544756	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000544756	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000544756	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000544756	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000399090	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000399090	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000399090	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000399090	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000407075	ENST00000319080		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000407075	ENST00000538698		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000407075	ENST00000377037		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-intron	ENST00000407075	ENST00000535996		ChiTaRS3.1			AW934839	GRAP2	chr22	40325526	+	MLXIP	chr12	122627715	+
intron-3UTR	ENST00000390237	ENST00000390237		ChiTaRS3.1			BE184999	IGKC	chr2	89247281	+	IGKC	chr2	89156841	+
3UTR-intron	ENST00000262370	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000262370	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000415496	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
3UTR-intron	ENST00000399577	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588994	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000586183	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000458477		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000228307		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000424649		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000397506		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000536957		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000267257		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000588015	ENST00000538144		ChiTaRS3.1			BF762439	MGRN1	chr16	4740612	-	PXN	chr12	120654005	+
intron-intron	ENST00000341724	ENST00000435819		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000309881		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000534394		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000441109		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000394788		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000447544		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000432207		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000544133		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000538969		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000341724	ENST00000433696		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000435819		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000309881		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000534394		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000441109		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000394788		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000447544		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000432207		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000544133		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000538969		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000372004	ENST00000433696		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000435819		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000309881		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000534394		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000441109		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000394788		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000447544		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000432207		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000544133		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000538969		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371998	ENST00000433696		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000435819		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000309881		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000534394		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000441109		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000394788		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000447544		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000432207		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000544133		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000538969		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000371997	ENST00000433696		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000435819		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000309881		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000534394		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000441109		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000394788		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000447544		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000432207		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000544133		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000538969		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-intron	ENST00000497292	ENST00000433696		ChiTaRS3.1			F12469	NCOA3	chr20	46133012	+	CD36	chr7	80125707	+
intron-3CDS	ENST00000421109	ENST00000421109		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000421109	ENST00000394166		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000421109	ENST00000394171		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000421109	ENST00000453270		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
5UTR-3CDS	ENST00000394166	ENST00000421109		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
5UTR-3CDS	ENST00000394166	ENST00000394166		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
5UTR-3CDS	ENST00000394166	ENST00000394171		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
5UTR-3CDS	ENST00000394166	ENST00000453270		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000394171	ENST00000421109		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000394171	ENST00000394166		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000394171	ENST00000394171		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000394171	ENST00000453270		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000453270	ENST00000421109		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000453270	ENST00000394166		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000453270	ENST00000394171		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
intron-3CDS	ENST00000453270	ENST00000453270		ChiTaRS3.1			CK725089	NR2F2	chr15	96874984	-	NR2F2	chr15	96880716	-
In-frame	ENST00000265109	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000512629	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000428746	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000503673	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000515799	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000506376	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
intron-3CDS	ENST00000507276	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
In-frame	ENST00000397449	ENST00000175091		ChiTaRS3.1			BE930969	RAI14	chr5	34823850	-	LAPTM4A	chr2	20237114	-
3UTR-3CDS	ENST00000367816	ENST00000367816		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367816	ENST00000367815		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367816	ENST00000499679		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367816	ENST00000367813		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367815	ENST00000367816		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367815	ENST00000367815		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367815	ENST00000499679		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367815	ENST00000367813		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000499679	ENST00000367816		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000499679	ENST00000367815		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000499679	ENST00000499679		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000499679	ENST00000367813		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367813	ENST00000367816		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367813	ENST00000367815		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367813	ENST00000499679		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
3UTR-3CDS	ENST00000367813	ENST00000367813		ChiTaRS3.1			BI467069	ATP1B1	chr1	169100837	+	ATP1B1	chr1	169094232	+
intron-intron	ENST00000431532	ENST00000560741		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-5UTR	ENST00000431532	ENST00000306072		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-5UTR	ENST00000431532	ENST00000379224		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-intron	ENST00000431532	ENST00000560746		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-intron	ENST00000370574	ENST00000560741		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-5UTR	ENST00000370574	ENST00000306072		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-5UTR	ENST00000370574	ENST00000379224		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-intron	ENST00000370574	ENST00000560746		ChiTaRS3.1			BC094819	ZNHIT6	chr1	86173608	-	ISG20	chr15	89182206	+
intron-intron	ENST00000338099	ENST00000427662		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000338099	ENST00000369774		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000338099	ENST00000355946		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000338099	ENST00000315994		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000338099	ENST00000540321		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000338099	ENST00000538130		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000427662		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000369774		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000355946		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000315994		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000540321		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
intron-intron	ENST00000434935	ENST00000538130		ChiTaRS3.1			AW952669	CMTR2	chr16	71319526	+	SH3PXD2A	chr10	105589254	+
5CDS-3UTR	ENST00000225402	ENST00000340482		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
5CDS-3UTR	ENST00000225402	ENST00000225275		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
5CDS-intron	ENST00000225402	ENST00000578493		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
intron-3UTR	ENST00000590321	ENST00000340482		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
intron-3UTR	ENST00000590321	ENST00000225275		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
intron-intron	ENST00000590321	ENST00000578493		ChiTaRS3.1			BF896319	AATF	chr17	35310287	-	MPO	chr17	56347897	+
intron-intron	ENST00000424834	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000424834	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382108	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000382095	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000474317	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000399949	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000409126	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000232375		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000536104		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000416568		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000541519		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000383734		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000490115		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
intron-intron	ENST00000343003	ENST00000545984		ChiTaRS3.1			CV325109	SPATA13	chr13	24808266	+	PFKFB4	chr3	48583474	-
3UTR-3CDS	ENST00000470258	ENST00000275034		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000470258	ENST00000479165		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-3CDS	ENST00000379600	ENST00000275034		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000379600	ENST00000479165		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-3CDS	ENST00000379599	ENST00000275034		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000379599	ENST00000479165		ChiTaRS3.1			BF946219	NHLRC3	chr13	39622412	-	PHIP	chr6	79697963	+
3UTR-intron	ENST00000477087	ENST00000477087		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
3UTR-5UTR	ENST00000477087	ENST00000228872		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
3UTR-intron	ENST00000477087	ENST00000396340		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
3UTR-intron	ENST00000228872	ENST00000477087		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
3UTR-5UTR	ENST00000228872	ENST00000228872		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
3UTR-intron	ENST00000228872	ENST00000396340		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
5CDS-intron	ENST00000396340	ENST00000477087		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
5CDS-5UTR	ENST00000396340	ENST00000228872		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
5CDS-intron	ENST00000396340	ENST00000396340		ChiTaRS3.1			DB000469	CDKN1B	chr12	12874121	+	CDKN1B	chr12	12870339	+
intron-3UTR	ENST00000452135	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000452135	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000452135	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000452135	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000452135	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000452135	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000452135	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000452135	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000452135	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000393360	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000393360	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000393360	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000393360	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000393360	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000393360	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000393360	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000393360	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000393360	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000455781	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000455781	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000455781	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000455781	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000455781	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000455781	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000455781	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000455781	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000455781	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000343111	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000343111	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000343111	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000343111	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000343111	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000343111	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000343111	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000343111	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000343111	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-3UTR	ENST00000347470	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-3UTR	ENST00000347470	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-3UTR	ENST00000347470	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-3UTR	ENST00000347470	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-intron	ENST00000347470	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-intron	ENST00000347470	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-intron	ENST00000347470	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-intron	ENST00000347470	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
5CDS-intron	ENST00000347470	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000397072	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000397072	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000397072	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000397072	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000397072	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000397072	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000397072	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000397072	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000397072	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000425491	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000425491	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000425491	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000425491	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000425491	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000425491	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000425491	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000425491	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000425491	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000539014	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000539014	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000539014	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000539014	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000539014	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000539014	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000539014	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000539014	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000539014	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000524170	ENST00000452135		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000524170	ENST00000393360		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000524170	ENST00000455781		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-3UTR	ENST00000524170	ENST00000343111		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000524170	ENST00000347470		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000524170	ENST00000397072		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000524170	ENST00000425491		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000524170	ENST00000539014		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000524170	ENST00000524170		ChiTaRS3.1			EB386199	MAPK9	chr5	179663188	+	MAPK9	chr5	179663135	-
intron-intron	ENST00000316020	ENST00000316020		ChiTaRS3.1			AF548119	OFCC1	chr6	9897240	+	OFCC1	chr6	9850631	+
intron-intron	ENST00000316020	ENST00000472329		ChiTaRS3.1			AF548119	OFCC1	chr6	9897240	+	OFCC1	chr6	9850631	+
intron-intron	ENST00000472329	ENST00000316020		ChiTaRS3.1			AF548119	OFCC1	chr6	9897240	+	OFCC1	chr6	9850631	+
intron-intron	ENST00000472329	ENST00000472329		ChiTaRS3.1			AF548119	OFCC1	chr6	9897240	+	OFCC1	chr6	9850631	+
intron-intron	ENST00000264039	ENST00000264039		ChiTaRS3.1			BG012329	GPC1	chr2	241391203	-	GPC1	chr2	241391467	-
intron-intron	ENST00000264039	ENST00000466624		ChiTaRS3.1			BG012329	GPC1	chr2	241391203	-	GPC1	chr2	241391467	-
intron-intron	ENST00000466624	ENST00000264039		ChiTaRS3.1			BG012329	GPC1	chr2	241391203	-	GPC1	chr2	241391467	-
intron-intron	ENST00000466624	ENST00000466624		ChiTaRS3.1			BG012329	GPC1	chr2	241391203	-	GPC1	chr2	241391467	-
Frame-shit	ENST00000377869	ENST00000381125		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000377869	ENST00000381075		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000377869	ENST00000421751		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000377869	ENST00000381072		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000220616	ENST00000381125		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000220616	ENST00000381075		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000220616	ENST00000421751		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000220616	ENST00000381072		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000542445	ENST00000381125		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000542445	ENST00000381075		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000542445	ENST00000421751		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000542445	ENST00000381072		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000519543	ENST00000381125		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
Frame-shit	ENST00000519543	ENST00000381075		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000519543	ENST00000421751		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-intron	ENST00000519543	ENST00000381072		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
intron-3CDS	ENST00000522523	ENST00000381125		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
intron-3CDS	ENST00000522523	ENST00000381075		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
intron-intron	ENST00000522523	ENST00000421751		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
intron-intron	ENST00000522523	ENST00000381072		ChiTaRS3.1			BI005429	TG	chr8	134125702	-	PFKP	chr10	3149421	+
5CDS-3UTR	ENST00000367760	ENST00000393459		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
5CDS-3UTR	ENST00000367760	ENST00000224807		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
5CDS-intron	ENST00000367760	ENST00000466982		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
3UTR-3UTR	ENST00000239461	ENST00000393459		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
3UTR-3UTR	ENST00000239461	ENST00000224807		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
3UTR-intron	ENST00000239461	ENST00000466982		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-3UTR	ENST00000497230	ENST00000393459		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-3UTR	ENST00000497230	ENST00000224807		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-intron	ENST00000497230	ENST00000466982		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-3UTR	ENST00000476867	ENST00000393459		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-3UTR	ENST00000476867	ENST00000224807		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-intron	ENST00000476867	ENST00000466982		ChiTaRS3.1			M95929	PRRX1	chr1	170705649	+	SFXN3	chr10	102800622	-
intron-3CDS	ENST00000496817	ENST00000304992		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-3CDS	ENST00000496817	ENST00000572621		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-intron	ENST00000496817	ENST00000575116		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-3CDS	ENST00000368719	ENST00000304992		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-3CDS	ENST00000368719	ENST00000572621		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-intron	ENST00000368719	ENST00000575116		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-3CDS	ENST00000368720	ENST00000304992		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-3CDS	ENST00000368720	ENST00000572621		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-intron	ENST00000368720	ENST00000575116		ChiTaRS3.1			DB371979	S100A6	chr1	153507284	+	PRPF8	chr17	1579934	+
intron-intron	ENST00000376511	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000376511	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000376511	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000376511	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000484449	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000484449	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000484449	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000484449	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000420949	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000420949	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000420949	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000420949	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549281	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549281	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549281	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549281	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000468706	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000468706	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000468706	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000468706	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000449113	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000449113	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000449113	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000449113	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000547333	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000547333	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000547333	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000547333	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000475926	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000475926	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000475926	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000475926	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000426299	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000426299	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000426299	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000426299	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000551493	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000551493	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000551493	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000551493	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000494003	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000494003	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000494003	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000494003	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000383586	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000383586	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000383586	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000383586	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000548899	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000548899	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000548899	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000548899	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000478528	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000478528	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000478528	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000478528	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000424446	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000424446	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000424446	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000424446	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000552146	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000552146	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000552146	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000552146	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000488513	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000488513	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000488513	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000488513	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000429597	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000429597	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000429597	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000429597	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549865	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549865	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549865	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000549865	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000482076	ENST00000211998		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000482076	ENST00000372755		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000482076	ENST00000478896		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
intron-intron	ENST00000482076	ENST00000417648		ChiTaRS3.1			BF843899	PPP1R10	chr6	1904741	-	VCL	chr10	75864152	+
5UTR-intron	ENST00000557342	ENST00000342983		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
5UTR-intron	ENST00000557342	ENST00000370874		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
5UTR-intron	ENST00000557342	ENST00000460462		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
5UTR-intron	ENST00000238688	ENST00000342983		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
5UTR-intron	ENST00000238688	ENST00000370874		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
5UTR-intron	ENST00000238688	ENST00000460462		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557623	ENST00000342983		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557623	ENST00000370874		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557623	ENST00000460462		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557431	ENST00000342983		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557431	ENST00000370874		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-intron	ENST00000557431	ENST00000460462		ChiTaRS3.1			DB310659	SLIRP	chr14	78174450	-	RAP2C	chrX	131343035	+
intron-3UTR	ENST00000443700	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000443700	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000443700	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000396654	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000396654	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000396654	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000396653	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000396653	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000396653	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000446015	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000446015	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000446015	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000409375	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000409375	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000409375	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000423110	ENST00000369037		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000423110	ENST00000453874		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-intron	ENST00000423110	ENST00000369031		ChiTaRS3.1			BU165869	AP1S3	chr2	224622425	-	PDSS2	chr6	107475040	-
intron-3UTR	ENST00000261192	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000261192	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000538118	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000538118	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000342945	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000342945	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000539282	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000539282	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000539780	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000539780	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000544418	ENST00000302060		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000544418	ENST00000505268		ChiTaRS3.1			AI275099	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3CDS	ENST00000301764	ENST00000301764		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000301764	ENST00000450997		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000451943		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000538470		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000545930		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000450997	ENST00000301764		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000450997	ENST00000450997		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000451943		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000538470		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000545930		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000451943	ENST00000301764		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000451943	ENST00000450997		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000451943		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000538470		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000545930		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000538470	ENST00000301764		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000538470	ENST00000450997		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000451943		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000538470		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000545930		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000545930	ENST00000301764		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000545930	ENST00000450997		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000451943		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000538470		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000545930		ChiTaRS3.1			BF976559	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000515408	ENST00000515408		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000515408	ENST00000389063		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000515408	ENST00000543319		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-3UTR	ENST00000515408	ENST00000504961		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000389063	ENST00000515408		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000389063	ENST00000389063		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000389063	ENST00000543319		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-3UTR	ENST00000389063	ENST00000504961		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000543319	ENST00000515408		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000543319	ENST00000389063		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-intron	ENST00000543319	ENST00000543319		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
intron-3UTR	ENST00000543319	ENST00000504961		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
3UTR-intron	ENST00000504961	ENST00000515408		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
3UTR-intron	ENST00000504961	ENST00000389063		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
3UTR-intron	ENST00000504961	ENST00000543319		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
3UTR-3UTR	ENST00000504961	ENST00000504961		ChiTaRS3.1			CB852569	DCP2	chr5	112320135	-	DCP2	chr5	112320003	+
In-frame	ENST00000296702	ENST00000296702		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
In-frame	ENST00000296702	ENST00000394421		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
5CDS-intron	ENST00000296702	ENST00000509787		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
In-frame	ENST00000394421	ENST00000296702		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
In-frame	ENST00000394421	ENST00000394421		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
5CDS-intron	ENST00000394421	ENST00000509787		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
3UTR-3CDS	ENST00000509787	ENST00000296702		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
3UTR-3CDS	ENST00000509787	ENST00000394421		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
3UTR-intron	ENST00000509787	ENST00000509787		ChiTaRS3.1			CB240939	TCERG1	chr5	145883067	+	TCERG1	chr5	145863124	+
intron-5UTR	ENST00000409078	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000409078	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000409078	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000541859	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000541859	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000541859	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000541377	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000541377	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000541377	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000455322	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000455322	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000455322	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000397587	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000397587	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000397587	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000263710	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000263710	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000263710	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000545861	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000545861	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000545861	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-5UTR	ENST00000430234	ENST00000358290		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000430234	ENST00000507518		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-intron	ENST00000430234	ENST00000507286		ChiTaRS3.1			DA039499	CLASP1	chr2	122288587	+	HSD17B11	chr4	88312341	-
intron-3UTR	ENST00000513408	ENST00000339302		ChiTaRS3.1			BX110909	GUSBP3	chr5	69099404	-	ZNF788	chr19	12224940	+
intron-3UTR	ENST00000513408	ENST00000430298		ChiTaRS3.1			BX110909	GUSBP3	chr5	69099404	-	ZNF788	chr19	12224940	+
intron-intron	ENST00000513408	ENST00000397755		ChiTaRS3.1			BX110909	GUSBP3	chr5	69099404	-	ZNF788	chr19	12224940	+
intron-intron	ENST00000513408	ENST00000596883		ChiTaRS3.1			BX110909	GUSBP3	chr5	69099404	-	ZNF788	chr19	12224940	+
intron-intron	ENST00000513408	ENST00000397759		ChiTaRS3.1			BX110909	GUSBP3	chr5	69099404	-	ZNF788	chr19	12224940	+
Frame-shit	ENST00000540468	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000540468	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000540468	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000540468	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000540468	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000540468	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000540468	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000539919	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000539919	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000258091	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000258091	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000398422	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000398422	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000537131	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000537131	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
Frame-shit	ENST00000538797	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
5CDS-intron	ENST00000538797	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000540468		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000539919		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000258091		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000398422		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000537131		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-3CDS	ENST00000473786	ENST00000538797		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
intron-intron	ENST00000473786	ENST00000473786		ChiTaRS3.1			CV324589	CCT7	chr2	73477010	-	CCT7	chr2	73478406	+
In-frame	ENST00000236938	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000236938	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-3UTR	ENST00000236938	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000367949	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367949	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000367949	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
In-frame	ENST00000367959	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367959	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-3UTR	ENST00000367959	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
In-frame	ENST00000540926	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000540926	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-3UTR	ENST00000540926	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000546024	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000546024	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000546024	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000350710	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000350710	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000350710	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000540521	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000540521	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000540521	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000367957	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367957	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000367957	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
In-frame	ENST00000349527	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000349527	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-3UTR	ENST00000349527	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000294796	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000294796	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000294796	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000309691	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000309691	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000309691	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
In-frame	ENST00000367953	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-intron	ENST00000367953	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
5CDS-3UTR	ENST00000367953	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000367950	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-intron	ENST00000367950	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3UTR	ENST00000367950	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-3CDS	ENST00000470841	ENST00000236938		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000367949		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000367959		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000540926		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000546024		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000350710		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000540521		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000367957		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000349527		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000294796		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000309691		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000367953		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-intron	ENST00000470841	ENST00000367950		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
3UTR-3UTR	ENST00000470841	ENST00000470841		ChiTaRS3.1			BF896859	FCRLA	chr1	161681046	-	FCRLA	chr1	161681235	+
intron-3CDS	ENST00000256062	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000256062	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000256062	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000256062	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000256062	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000256062	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000551659	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000551659	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000551659	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000551659	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000551659	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000551659	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000552618	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000552618	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000552618	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000552618	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000552618	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000552618	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000319685	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000319685	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000319685	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000319685	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000319685	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000319685	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000539277	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000539277	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000539277	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000539277	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000539277	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000539277	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000381224	ENST00000504734		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000381224	ENST00000415618		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000381224	ENST00000452673		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000381224	ENST00000247461		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000381224	ENST00000512607		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-intron	ENST00000381224	ENST00000503126		ChiTaRS3.1			BE836489	TMTC1	chr12	29727036	-	CANX	chr5	179136873	+
intron-3CDS	ENST00000541742	ENST00000556611		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000541742	ENST00000539826		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000541742	ENST00000396582		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000541742	ENST00000432921		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000541742	ENST00000345122		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000541742	ENST00000433497		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000556611		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000539826		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000396582		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000432921		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000345122		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000490107	ENST00000433497		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000556611		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000539826		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000396582		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000432921		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000345122		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000388985	ENST00000433497		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000556611		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000539826		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000396582		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000432921		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000345122		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000366517	ENST00000433497		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000556611		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000539826		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000396582		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000432921		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000345122		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-3CDS	ENST00000403792	ENST00000433497		ChiTaRS3.1			BF816099	SMYD3	chr1	246469002	+	ARHGAP5	chr14	32623930	-
intron-intron	ENST00000307750	ENST00000307750		ChiTaRS3.1			DQ376078	ZBTB5	chr9	37457614	-	ZBTB5	chr9	37458015	+
intron-3CDS	ENST00000526683	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000526683	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000526683	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000526683	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000526683	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000526683	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000526683	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000453551	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000453551	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000313352	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000313352	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000456095	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000456095	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000349157	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000349157	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000527197	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000527197	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000526683		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000453551		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000313352		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000456095		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000349157		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-3CDS	ENST00000524570	ENST00000527197		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
intron-intron	ENST00000524570	ENST00000524570		ChiTaRS3.1			CR978549	PUF60	chr8	144899252	+	PUF60	chr8	144899212	-
5CDS-intron	ENST00000603302	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000603302	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000403312	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000309522	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000505878	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
5CDS-intron	ENST00000454409	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000560281		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000407092		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000272369		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000488550		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000398506		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000444274		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000495021		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000510728	ENST00000409517		ChiTaRS3.1			BM504479	HADH	chr4	108935744	+	MEIS1	chr2	66784099	+
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			S79541	KMT2A	chr11	118356101	+	MLLT3	chr9	20375510	-
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CA335869	IGFBP5	chr2	217539308	+	IGFBP5	chr2	217536936	-
intron-intron	ENST00000263754	ENST00000263754		ChiTaRS3.1			BF876109	KAT2B	chr3	20096462	-	KAT2B	chr3	20095693	+
intron-intron	ENST00000263754	ENST00000426228		ChiTaRS3.1			BF876109	KAT2B	chr3	20096462	-	KAT2B	chr3	20095693	+
intron-intron	ENST00000426228	ENST00000263754		ChiTaRS3.1			BF876109	KAT2B	chr3	20096462	-	KAT2B	chr3	20095693	+
intron-intron	ENST00000426228	ENST00000426228		ChiTaRS3.1			BF876109	KAT2B	chr3	20096462	-	KAT2B	chr3	20095693	+
intron-3UTR	ENST00000340149	ENST00000340149		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000340149	ENST00000361507		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-intron	ENST00000340149	ENST00000526030		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000361507	ENST00000340149		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000361507	ENST00000361507		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-intron	ENST00000361507	ENST00000526030		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000526030	ENST00000340149		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000526030	ENST00000361507		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-intron	ENST00000526030	ENST00000526030		ChiTaRS3.1			BE085589	GAB2	chr11	77926706	+	GAB2	chr11	77927003	-
intron-3UTR	ENST00000375446	ENST00000375446		ChiTaRS3.1			BE843859	NINJ1	chr9	95884333	+	NINJ1	chr9	95884444	-
intron-5UTR	ENST00000375446	ENST00000489274		ChiTaRS3.1			BE843859	NINJ1	chr9	95884333	+	NINJ1	chr9	95884444	-
intron-3UTR	ENST00000489274	ENST00000375446		ChiTaRS3.1			BE843859	NINJ1	chr9	95884333	+	NINJ1	chr9	95884444	-
intron-5UTR	ENST00000489274	ENST00000489274		ChiTaRS3.1			BE843859	NINJ1	chr9	95884333	+	NINJ1	chr9	95884444	-
intron-intron	ENST00000559565	ENST00000369717		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000369716		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000241356		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000559565	ENST00000486342		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000369717		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000369716		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000241356		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
intron-intron	ENST00000261884	ENST00000486342		ChiTaRS3.1			AV705429	TRIP4	chr15	64713956	-	ADORA3	chr1	112032284	-
5CDS-intron	ENST00000318522	ENST00000389048		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000402711	ENST00000389048		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000482660	ENST00000389048		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000401738	ENST00000389048		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000453191	ENST00000389048		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			AB462411	EML4	chr2	42522657	+	ALK	chr2	29446465	-
intron-3CDS	ENST00000443149	ENST00000417172		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000361388		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000422748		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000361675		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000361901		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000393118		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000495522		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000424922		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000443149	ENST00000543443		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-intron	ENST00000443149	ENST00000466704		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000417172		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000361388		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000422748		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000361675		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000361901		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000393118		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000495522		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000424922		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000399933	ENST00000543443		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-intron	ENST00000399933	ENST00000466704		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000417172		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000361388		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000422748		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000361675		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000361901		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000393118		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000495522		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000424922		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-3CDS	ENST00000381461	ENST00000543443		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
intron-intron	ENST00000381461	ENST00000466704		ChiTaRS3.1			BM682219	KIAA2026	chr9	5968187	+	CALD1	chr7	134618080	-
5UTR-3CDS	ENST00000323848	ENST00000323848		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
5UTR-3CDS	ENST00000323848	ENST00000447431		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
5UTR-3CDS	ENST00000323848	ENST00000374389		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
5UTR-3UTR	ENST00000323848	ENST00000479034		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
5UTR-intron	ENST00000323848	ENST00000537199		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000447431	ENST00000323848		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000447431	ENST00000447431		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000447431	ENST00000374389		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3UTR	ENST00000447431	ENST00000479034		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-intron	ENST00000447431	ENST00000537199		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000374389	ENST00000323848		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000374389	ENST00000447431		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000374389	ENST00000374389		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3UTR	ENST00000374389	ENST00000479034		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-intron	ENST00000374389	ENST00000537199		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000479034	ENST00000323848		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000479034	ENST00000447431		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000479034	ENST00000374389		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3UTR	ENST00000479034	ENST00000479034		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-intron	ENST00000479034	ENST00000537199		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000537199	ENST00000323848		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000537199	ENST00000447431		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3CDS	ENST00000537199	ENST00000374389		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-3UTR	ENST00000537199	ENST00000479034		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-intron	ENST00000537199	ENST00000537199		ChiTaRS3.1			AA380469	SRRM1	chr1	24969771	-	SRRM1	chr1	24972475	+
intron-intron	ENST00000397110	ENST00000397110		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000397110	ENST00000337843		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-5UTR	ENST00000397110	ENST00000470655		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000397110	ENST00000255836		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000337843	ENST00000397110		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000337843	ENST00000337843		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-5UTR	ENST00000337843	ENST00000470655		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000337843	ENST00000255836		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000470655	ENST00000397110		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000470655	ENST00000337843		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-5UTR	ENST00000470655	ENST00000470655		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000470655	ENST00000255836		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000255836	ENST00000397110		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000255836	ENST00000337843		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-5UTR	ENST00000255836	ENST00000470655		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000255836	ENST00000255836		ChiTaRS3.1			AK226149	C1QTNF6	chr22	37582115	+	C1QTNF6	chr22	37581994	-
intron-intron	ENST00000254108	ENST00000547303		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000254108	ENST00000551116		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000254108	ENST00000346473		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000254108	ENST00000552740		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000380244	ENST00000547303		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000380244	ENST00000551116		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000380244	ENST00000346473		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000380244	ENST00000552740		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000568685	ENST00000547303		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000568685	ENST00000551116		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000568685	ENST00000346473		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000568685	ENST00000552740		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000474990	ENST00000547303		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000474990	ENST00000551116		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000474990	ENST00000346473		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000474990	ENST00000552740		ChiTaRS3.1			Y10002	FUS	chr16	31198614	+	DDIT3	chr12	57912734	-
intron-intron	ENST00000373050	ENST00000264712		ChiTaRS3.1			BF737169	MDFI	chr6	41612325	-	KIF3C	chr2	26152172	+
intron-intron	ENST00000373050	ENST00000405914		ChiTaRS3.1			BF737169	MDFI	chr6	41612325	-	KIF3C	chr2	26152172	+
intron-intron	ENST00000373050	ENST00000496378		ChiTaRS3.1			BF737169	MDFI	chr6	41612325	-	KIF3C	chr2	26152172	+
5CDS-intron	ENST00000343815	ENST00000367588		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000343815	ENST00000367587		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000343815	ENST00000461346		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000428931	ENST00000367588		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000428931	ENST00000367587		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000428931	ENST00000461346		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000271877	ENST00000367588		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000271877	ENST00000367587		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000271877	ENST00000461346		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000361546	ENST00000367588		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000361546	ENST00000367587		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
5CDS-intron	ENST00000361546	ENST00000461346		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
intron-intron	ENST00000484819	ENST00000367588		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
intron-intron	ENST00000484819	ENST00000367587		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
intron-intron	ENST00000484819	ENST00000461346		ChiTaRS3.1			BF798199	UBAP2L	chr1	154232445	-	KIAA1614	chr1	180898288	-
intron-intron	ENST00000392524	ENST00000371621		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000392524	ENST00000541713		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
3UTR-intron	ENST00000411529	ENST00000371621		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
3UTR-intron	ENST00000411529	ENST00000541713		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000435711	ENST00000371621		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-intron	ENST00000435711	ENST00000541713		ChiTaRS3.1			BF877639	HNRNPA3	chr2	178088060	-	PTPN1	chr20	49192473	+
intron-5UTR	ENST00000477049	ENST00000477049		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000477049	ENST00000224140		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000477049	ENST00000393220		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000477049	ENST00000372169		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-5UTR	ENST00000224140	ENST00000477049		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000224140	ENST00000224140		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000224140	ENST00000393220		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000224140	ENST00000372169		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-5UTR	ENST00000393220	ENST00000477049		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000393220	ENST00000224140		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000393220	ENST00000393220		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000393220	ENST00000372169		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-5UTR	ENST00000372169	ENST00000477049		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000372169	ENST00000224140		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000372169	ENST00000393220		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
intron-3UTR	ENST00000372169	ENST00000372169		ChiTaRS3.1			CN359779	SETX	chr9	135138988	+	SETX	chr9	135138916	-
3UTR-3UTR	ENST00000295887	ENST00000295887		ChiTaRS3.1			BU674749	CDS1	chr4	85570297	-	CDS1	chr4	85569849	+
intron-3UTR	ENST00000259037	ENST00000331886		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000259037	ENST00000394147		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000259037	ENST00000551156		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-intron	ENST00000259037	ENST00000549079		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
3UTR-3UTR	ENST00000493866	ENST00000331886		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
3UTR-3UTR	ENST00000493866	ENST00000394147		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
3UTR-3UTR	ENST00000493866	ENST00000551156		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
3UTR-intron	ENST00000493866	ENST00000549079		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000472629	ENST00000331886		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000472629	ENST00000394147		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000472629	ENST00000551156		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-intron	ENST00000472629	ENST00000549079		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000473500	ENST00000331886		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000473500	ENST00000394147		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000473500	ENST00000551156		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-intron	ENST00000473500	ENST00000549079		ChiTaRS3.1			BU948429	NDUFB5	chr3	179342392	+	DGKA	chr12	56347720	+
intron-3UTR	ENST00000322723	ENST00000290341		ChiTaRS3.1			BF816639	NCL	chr2	232324973	+	IGF2BP1	chr17	47132662	+
intron-intron	ENST00000322723	ENST00000431824		ChiTaRS3.1			BF816639	NCL	chr2	232324973	+	IGF2BP1	chr17	47132662	+
intron-intron	ENST00000322723	ENST00000515586		ChiTaRS3.1			BF816639	NCL	chr2	232324973	+	IGF2BP1	chr17	47132662	+
intron-intron	ENST00000281928	ENST00000373079		ChiTaRS3.1			DA392149	MED13L	chr12	116398992	-	NAP1L3	chrX	92928577	-
intron-intron	ENST00000281928	ENST00000475430		ChiTaRS3.1			DA392149	MED13L	chr12	116398992	-	NAP1L3	chrX	92928577	-
intron-intron	ENST00000551197	ENST00000373079		ChiTaRS3.1			DA392149	MED13L	chr12	116398992	-	NAP1L3	chrX	92928577	-
intron-intron	ENST00000551197	ENST00000475430		ChiTaRS3.1			DA392149	MED13L	chr12	116398992	-	NAP1L3	chrX	92928577	-
intron-intron	ENST00000604938	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000604938	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000604938	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401010	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401010	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401010	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000339388	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000339388	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000339388	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000369323	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000369323	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000369323	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000605317	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000605317	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000605317	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000479926	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000479926	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000479926	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000604894	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000604894	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000604894	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401009	ENST00000225823		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401009	ENST00000359872		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000401009	ENST00000448983		ChiTaRS3.1			AF420439	NBPF11	chr1	147586722	-	ASIC2	chr17	32015864	+
intron-intron	ENST00000400546	ENST00000482518		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000400546	ENST00000392054		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000400546	ENST00000409462		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000400546	ENST00000392055		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000400546	ENST00000354069		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000284894	ENST00000482518		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000284894	ENST00000392054		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000284894	ENST00000409462		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000284894	ENST00000392055		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000284894	ENST00000354069		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000535285	ENST00000482518		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000535285	ENST00000392054		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000535285	ENST00000409462		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000535285	ENST00000392055		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000535285	ENST00000354069		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000486367	ENST00000482518		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000486367	ENST00000392054		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000486367	ENST00000409462		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000486367	ENST00000392055		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000486367	ENST00000354069		ChiTaRS3.1			BQ428239	NCAM2	chr21	22831731	-	PID1	chr2	230060052	+
intron-intron	ENST00000520468	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000520468	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000520468	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000297564	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000297564	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000297564	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000520271	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000520271	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000520271	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000517682	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000517682	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000517682	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000524245	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000524245	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000524245	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000522940	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000522940	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000522940	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000518171	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000518171	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000518171	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000523016	ENST00000338316		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000523016	ENST00000537121		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-intron	ENST00000523016	ENST00000513693		ChiTaRS3.1			CA450159	COX6C	chr8	100904212	+	ADCY2	chr1	152005043	-
intron-5UTR	ENST00000531187	ENST00000253577		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000531187	ENST00000339447		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000531187	ENST00000373394		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-intron	ENST00000531187	ENST00000534570		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000336930	ENST00000253577		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000336930	ENST00000339447		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000336930	ENST00000373394		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-intron	ENST00000336930	ENST00000534570		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000533227	ENST00000253577		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000533227	ENST00000339447		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-5UTR	ENST00000533227	ENST00000373394		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-intron	ENST00000533227	ENST00000534570		ChiTaRS3.1			AB005289	LUZP2	chr11	24843079	-	ABCB7	chrX	74376115	-
intron-3CDS	ENST00000353278	ENST00000222339		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000353278	ENST00000600245		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000353278	ENST00000359044		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000358525	ENST00000222339		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000358525	ENST00000600245		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000358525	ENST00000359044		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000456124	ENST00000222339		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000456124	ENST00000600245		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000456124	ENST00000359044		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000493980	ENST00000222339		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000493980	ENST00000600245		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
intron-3CDS	ENST00000493980	ENST00000359044		ChiTaRS3.1			BF765479	SLC6A20	chr3	45804472	+	ZNF574	chr19	42583732	-
Frame-shit	ENST00000415149	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000415149	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000415149	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000402543	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000402543	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000402543	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000325805	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000325805	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000325805	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000416476	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000416476	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000416476	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000406780	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000406780	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
Frame-shit	ENST00000406780	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000473542	ENST00000282470		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000473542	ENST00000418378		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3CDS	ENST00000473542	ENST00000503414		ChiTaRS3.1			BE176379	BBX	chr3	107492189	-	SPARCL1	chr4	88412796	+
intron-3UTR	ENST00000393784	ENST00000534336		ChiTaRS3.1			BF090479	ERGIC1	chr5	172355529	-	MALAT1	chr11	65268033	+
intron-3UTR	ENST00000519860	ENST00000534336		ChiTaRS3.1			BF090479	ERGIC1	chr5	172355529	-	MALAT1	chr11	65268033	+
intron-3UTR	ENST00000523291	ENST00000534336		ChiTaRS3.1			BF090479	ERGIC1	chr5	172355529	-	MALAT1	chr11	65268033	+
intron-3UTR	ENST00000326654	ENST00000534336		ChiTaRS3.1			BF090479	ERGIC1	chr5	172355529	-	MALAT1	chr11	65268033	+
3UTR-3UTR	ENST00000423007	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000423007	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000423007	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-3UTR	ENST00000404875	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000404875	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000404875	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-3UTR	ENST00000341012	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000341012	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000341012	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-3UTR	ENST00000372228	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000372228	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000372228	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-3UTR	ENST00000419118	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000419118	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000419118	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-3UTR	ENST00000402686	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000402686	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000402686	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-3UTR	ENST00000541219	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000541219	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000541219	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-3UTR	ENST00000354713	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000354713	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-intron	ENST00000354713	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-3UTR	ENST00000485278	ENST00000465139		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000485278	ENST00000483551		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
3UTR-intron	ENST00000485278	ENST00000560303		ChiTaRS3.1			AA173919	POMT1	chr9	134398890	-	ANP32A	chr15	69072241	-
intron-3CDS	ENST00000263846	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000263846	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000540677	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000540677	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000539008	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000539008	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000542836	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000542836	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000542670	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000542670	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000535826	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000535826	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-3CDS	ENST00000540831	ENST00000215829		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000540831	ENST00000402849		ChiTaRS3.1			AW603119	SYT7	chr11	61285108	+	SNRPD3	chr22	24967917	+
intron-intron	ENST00000556029	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000556029	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000556029	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000556029	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000556029	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000556029	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000343315	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
5CDS-intron	ENST00000266732	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000393053	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000261210	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000556029		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000343315		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000266732		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000393053		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000261210		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
intron-intron	ENST00000548223	ENST00000548223		ChiTaRS3.1			AA095709	TMPO	chr12	98927322	+	TMPO	chr12	98926876	+
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			BU675389	TMEM50A	chr1	25688630	-	TMEM50A	chr1	25688275	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			BU675389	TMEM50A	chr1	25688630	-	TMEM50A	chr1	25688275	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			BU675389	TMEM50A	chr1	25688630	-	TMEM50A	chr1	25688275	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			BU675389	TMEM50A	chr1	25688630	-	TMEM50A	chr1	25688275	+
intron-3UTR	ENST00000307484	ENST00000307484		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000307484	ENST00000429967		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000307484	ENST00000427399		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000429967	ENST00000307484		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000429967	ENST00000429967		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000429967	ENST00000427399		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000427399	ENST00000307484		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000427399	ENST00000429967		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-3UTR	ENST00000427399	ENST00000427399		ChiTaRS3.1			BG009509	APLN	chrX	128781395	-	APLN	chrX	128781865	-
intron-intron	ENST00000308366	ENST00000261881		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000308366	ENST00000367709		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000308366	ENST00000561773		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000423423	ENST00000261881		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000423423	ENST00000367709		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000423423	ENST00000561773		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000549767	ENST00000261881		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000549767	ENST00000367709		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-intron	ENST00000549767	ENST00000561773		ChiTaRS3.1			BM926419	PLA2G1B	chr12	120763976	+	TIPIN	chr15	66649113	-
intron-5UTR	ENST00000210060	ENST00000210060		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000210060	ENST00000351660		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000210060	ENST00000594424		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000210060	ENST00000599481		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-5UTR	ENST00000351660	ENST00000210060		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000351660	ENST00000351660		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000351660	ENST00000594424		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000351660	ENST00000599481		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-5UTR	ENST00000594424	ENST00000210060		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000594424	ENST00000351660		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000594424	ENST00000594424		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000594424	ENST00000599481		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-5UTR	ENST00000599481	ENST00000210060		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000599481	ENST00000351660		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000599481	ENST00000594424		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-intron	ENST00000599481	ENST00000599481		ChiTaRS3.1			CV364179	DHPS	chr19	12791114	+	DHPS	chr19	12792684	-
intron-3CDS	ENST00000541156	ENST00000538159		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000541156	ENST00000514213		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000357137	ENST00000538159		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000357137	ENST00000514213		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
5UTR-3CDS	ENST00000544094	ENST00000538159		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
5UTR-3CDS	ENST00000544094	ENST00000514213		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000414396	ENST00000538159		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000414396	ENST00000514213		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
3UTR-3CDS	ENST00000482652	ENST00000538159		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
3UTR-3CDS	ENST00000482652	ENST00000514213		ChiTaRS3.1			AI635379	XPNPEP3	chr22	41258321	-	USO1	chr4	76692047	-
intron-3CDS	ENST00000371564	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000371564	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-3CDS	ENST00000396009	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000396009	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-3CDS	ENST00000609943	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000609943	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-3CDS	ENST00000610033	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000610033	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-3CDS	ENST00000414705	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000414705	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-3CDS	ENST00000609507	ENST00000296161		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
intron-intron	ENST00000609507	ENST00000383661		ChiTaRS3.1			BF850139	NFATC2	chr20	50154054	+	DTX3L	chr3	122288489	+
3UTR-3UTR	ENST00000010404	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000010404	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000010404	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-3UTR	ENST00000396210	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396210	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396210	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-3UTR	ENST00000535309	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000535309	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000535309	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-3UTR	ENST00000540056	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000540056	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000540056	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-3UTR	ENST00000396209	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396209	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396209	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-3UTR	ENST00000396207	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396207	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000396207	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-3UTR	ENST00000359720	ENST00000414007		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000359720	ENST00000419187		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
intron-intron	ENST00000359720	ENST00000471256		ChiTaRS3.1			DB298359	MGST1	chr12	16517237	-	SRGAP2	chr1	206635257	-
3UTR-intron	ENST00000260641	ENST00000323963		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
3UTR-intron	ENST00000260641	ENST00000440191		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
3UTR-intron	ENST00000260641	ENST00000356531		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000476840	ENST00000323963		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000476840	ENST00000440191		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000476840	ENST00000356531		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000542850	ENST00000323963		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000542850	ENST00000440191		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
intron-intron	ENST00000542850	ENST00000356531		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
5CDS-intron	ENST00000377982	ENST00000323963		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
5CDS-intron	ENST00000377982	ENST00000440191		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
5CDS-intron	ENST00000377982	ENST00000356531		ChiTaRS3.1			BF840289	ACTR2	chr2	65497286	-	EIF4A2	chr3	186506064	+
3UTR-3UTR	ENST00000322315	ENST00000322315		ChiTaRS3.1			BQ637589	GIPC3	chr19	3593296	+	GIPC3	chr19	3593005	+
In-frame	ENST00000261168	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000261168	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000261168	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000261168	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000543189	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000543189	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000543189	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000536444	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000536444	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000536444	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000544627	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000544627	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000544627	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000541654	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3UTR	ENST00000541654	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3UTR	ENST00000541654	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000261168		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000543189		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000536444		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
In-frame	ENST00000540793	ENST00000544627		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000540793	ENST00000541654		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
5CDS-3UTR	ENST00000540793	ENST00000540793		ChiTaRS3.1			BI033859	ATF7IP	chr12	14619524	+	ATF7IP	chr12	14609492	+
intron-3CDS	ENST00000216181	ENST00000449352		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000216181	ENST00000529360		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000216181	ENST00000265978		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000216181	ENST00000524416		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-3CDS	ENST00000475726	ENST00000449352		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000475726	ENST00000529360		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000475726	ENST00000265978		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000475726	ENST00000524416		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-3CDS	ENST00000401701	ENST00000449352		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000401701	ENST00000529360		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000401701	ENST00000265978		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000401701	ENST00000524416		ChiTaRS3.1			BQ335679	MYH9	chr22	36697662	+	FAM160A2	chr11	6238698	+
intron-intron	ENST00000356415	ENST00000356415		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000356415	ENST00000436150		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000356415	ENST00000369709		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000356415	ENST00000545460		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000356415	ENST00000494982		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000436150	ENST00000356415		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000436150	ENST00000436150		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000436150	ENST00000369709		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000436150	ENST00000545460		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000436150	ENST00000494982		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000369709	ENST00000356415		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000369709	ENST00000436150		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000369709	ENST00000369709		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000369709	ENST00000545460		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000369709	ENST00000494982		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000545460	ENST00000356415		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000545460	ENST00000436150		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000545460	ENST00000369709		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000545460	ENST00000545460		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000545460	ENST00000494982		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000494982	ENST00000356415		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000494982	ENST00000436150		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000494982	ENST00000369709		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000494982	ENST00000545460		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
intron-intron	ENST00000494982	ENST00000494982		ChiTaRS3.1			BP418289	RAP1A	chr1	112196382	+	RAP1A	chr1	112196530	-
5CDS-intron	ENST00000374316	ENST00000402198		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000374316	ENST00000402466		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000374316	ENST00000406341		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000374316	ENST00000407969		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000374316	ENST00000302463		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000374316	ENST00000488236		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000402198		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000402466		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000406341		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000407969		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000302463		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
5CDS-intron	ENST00000605930	ENST00000488236		ChiTaRS3.1			BF763529	ITPR3	chr6	33648178	-	SETD5	chr3	9516855	+
intron-intron	ENST00000233710	ENST00000524717		ChiTaRS3.1			BQ343589	ACADL	chr2	211069357	-	MAML2	chr11	95805643	-
intron-intron	ENST00000394417	ENST00000342247		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000400585		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000497534		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000400573		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000394417	ENST00000262608		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000342247		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000400585		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000497534		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000400573		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000467648	ENST00000262608		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000342247		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000400585		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000497534		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000400573		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000487469	ENST00000262608		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000342247		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000400585		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000497534		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000400573		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000337130	ENST00000262608		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000342247		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000400585		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000497534		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000400573		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000445915	ENST00000262608		ChiTaRS3.1			BI026849	UGP2	chr2	64087013	+	CECR2	chr22	17896181	-
intron-intron	ENST00000303406	ENST00000504557		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000303406	ENST00000508190		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000303406	ENST00000303450		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000507650	ENST00000504557		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000507650	ENST00000508190		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000507650	ENST00000303450		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000609810	ENST00000504557		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000609810	ENST00000508190		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000609810	ENST00000303450		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000430889	ENST00000504557		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000430889	ENST00000508190		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-intron	ENST00000430889	ENST00000303450		ChiTaRS3.1			BE076489	HOXC4	chr12	54437181	-	HOXC9	chr12	54394824	+
intron-5UTR	ENST00000314332	ENST00000162749		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-5UTR	ENST00000314332	ENST00000540022		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-intron	ENST00000314332	ENST00000366159		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-intron	ENST00000314332	ENST00000437813		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-5UTR	ENST00000396984	ENST00000162749		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-5UTR	ENST00000396984	ENST00000540022		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-intron	ENST00000396984	ENST00000366159		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-intron	ENST00000396984	ENST00000437813		ChiTaRS3.1			DA769609	HIST1H2BC	chr6	26123693	-	TNFRSF1A	chr12	6451194	-
intron-intron	ENST00000271308	ENST00000368020		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000271308	ENST00000368021		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000271308	ENST00000435396		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-intron	ENST00000271308	ENST00000368019		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-intron	ENST00000538610	ENST00000368020		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000538610	ENST00000368021		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000538610	ENST00000435396		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-intron	ENST00000538610	ENST00000368019		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-intron	ENST00000490870	ENST00000368020		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000490870	ENST00000368021		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-5UTR	ENST00000490870	ENST00000435396		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-intron	ENST00000490870	ENST00000368019		ChiTaRS3.1			BP284679	PSMA5	chr1	109954767	-	USF1	chr1	161015686	-
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BI059649	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000378455	ENST00000408890		ChiTaRS3.1			DB051109	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000342274	ENST00000408890		ChiTaRS3.1			DB051109	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000378463	ENST00000408890		ChiTaRS3.1			DB051109	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000397354	ENST00000408890		ChiTaRS3.1			DB051109	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-intron	ENST00000378444	ENST00000408890		ChiTaRS3.1			DB051109	BCOR	chrX	39921597	-	POM121L12	chr7	53103335	+
intron-3UTR	ENST00000599056	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599056	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599056	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599056	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000599056	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000599056	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000418871	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000418871	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000418871	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000418871	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000418871	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000418871	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000429604	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000429604	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000429604	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000429604	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000429604	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000429604	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000601421	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000601421	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000601421	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000601421	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000601421	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000601421	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000355147	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000355147	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000355147	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000355147	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000355147	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000355147	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599729	ENST00000599056		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599729	ENST00000418871		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599729	ENST00000429604		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-3UTR	ENST00000599729	ENST00000601421		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000599729	ENST00000355147		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000599729	ENST00000599729		ChiTaRS3.1			BF086259	ZNF160	chr19	53579695	+	ZNF160	chr19	53570346	+
intron-intron	ENST00000399231	ENST00000241261		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000399231	ENST00000420541		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000356338	ENST00000241261		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000356338	ENST00000420541		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000358212	ENST00000241261		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000358212	ENST00000420541		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000399233	ENST00000241261		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000399233	ENST00000420541		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000553916	ENST00000241261		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000553916	ENST00000420541		ChiTaRS3.1			AW384939	MYO5A	chr15	52623387	+	TNFSF10	chr3	172227255	-
intron-intron	ENST00000315872	ENST00000315872		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000315872	ENST00000462366		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000315872	ENST00000401753		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000462366	ENST00000315872		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000462366	ENST00000462366		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000462366	ENST00000401753		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000401753	ENST00000315872		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000401753	ENST00000462366		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000401753	ENST00000401753		ChiTaRS3.1			AF085869	ROCK2	chr2	11414243	-	ROCK2	chr16	5438771	+
intron-intron	ENST00000429644	ENST00000544892		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000429644	ENST00000320031		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000429644	ENST00000007722		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000489715	ENST00000544892		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000489715	ENST00000320031		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000489715	ENST00000007722		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000477426	ENST00000544892		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000477426	ENST00000320031		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000477426	ENST00000007722		ChiTaRS3.1			CA428629	GBE1	chr3	81562616	-	ITGA3	chr17	48145617	+
intron-intron	ENST00000539115	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000539115	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000539115	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000539115	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000539115	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000539115	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379188	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000379177	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000304543	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000459724	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000540034	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000405592		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000406652		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000407270		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000406911		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000405094		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000338565	ENST00000472767		ChiTaRS3.1			R17109	ZFX	chrX	24220161	-	MTA3	chr2	42970541	-
intron-intron	ENST00000344749	ENST00000396795		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000344749	ENST00000319770		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000344749	ENST00000396801		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000344749	ENST00000361959		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000344749	ENST00000355772		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000344749	ENST00000396799		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000396795		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000319770		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000396801		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000361959		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000355772		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000262965	ENST00000396799		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000396795		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000319770		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000396801		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000361959		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000355772		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000453954	ENST00000396799		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000396795		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000319770		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000396801		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000361959		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000355772		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000395423	ENST00000396799		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000396795		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000319770		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000396801		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000361959		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000355772		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000588136	ENST00000396799		ChiTaRS3.1			EU159436	TCF3	chr19	1621562	-	ZNF384	chr12	6794153	-
intron-intron	ENST00000541951	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000541951	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000310571	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000535604	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000536003	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544552	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000376384	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000543079	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000541951		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000310571		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000535604		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000536003		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000544552		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000376384		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000543079		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-intron	ENST00000544909	ENST00000544909		ChiTaRS3.1			W26399	PAAF1	chr11	73589871	-	PAAF1	chr11	73590074	+
intron-3UTR	ENST00000261745	ENST00000218200		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-3UTR	ENST00000261745	ENST00000370471		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-3UTR	ENST00000261745	ENST00000370477		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-intron	ENST00000261745	ENST00000334557		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-3UTR	ENST00000261745	ENST00000439526		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-3UTR	ENST00000261745	ENST00000370475		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-intron	ENST00000261745	ENST00000370470		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-intron	ENST00000261745	ENST00000440235		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-intron	ENST00000261745	ENST00000492846		ChiTaRS3.1			AW801819	NAA25	chr12	112488811	-	FMR1	chrX	147030915	+
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-3UTR	ENST00000448637	ENST00000312675		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-3UTR	ENST00000448637	ENST00000543006		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-3UTR	ENST00000312675	ENST00000312675		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-3UTR	ENST00000312675	ENST00000543006		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-3UTR	ENST00000543006	ENST00000312675		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-3UTR	ENST00000543006	ENST00000543006		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
3UTR-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-3UTR	ENST00000471917	ENST00000312675		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-3UTR	ENST00000471917	ENST00000543006		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			BG176709	LPP	chr3	188594558	-	LPP	chr3	188594603	+
intron-3CDS	ENST00000338099	ENST00000338099		ChiTaRS3.1			AI751269	CMTR2	chr16	71319588	+	CMTR2	chr16	71319528	-
intron-3CDS	ENST00000338099	ENST00000434935		ChiTaRS3.1			AI751269	CMTR2	chr16	71319588	+	CMTR2	chr16	71319528	-
intron-3CDS	ENST00000434935	ENST00000338099		ChiTaRS3.1			AI751269	CMTR2	chr16	71319588	+	CMTR2	chr16	71319528	-
intron-3CDS	ENST00000434935	ENST00000434935		ChiTaRS3.1			AI751269	CMTR2	chr16	71319588	+	CMTR2	chr16	71319528	-
intron-3UTR	ENST00000373511	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373511	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373511	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373511	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373511	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373498	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373498	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373498	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373498	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373498	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000350766	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000350766	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000350766	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000350766	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000350766	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373503	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373503	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373503	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373503	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373503	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394063	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394063	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394063	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000394063	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000394063	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000265960	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000265960	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000265960	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000265960	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000265960	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373497	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373497	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000373497	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373497	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000373497	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394060	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394060	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000394060	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000394060	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000394060	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000483937	ENST00000228495		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000483937	ENST00000540089		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3UTR	ENST00000483937	ENST00000424763		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000483937	ENST00000538161		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-intron	ENST00000483937	ENST00000540411		ChiTaRS3.1			BE159469	MAPKAP1	chr9	128319344	+	KCTD10	chr12	109888557	+
intron-3CDS	ENST00000372189	ENST00000225964		ChiTaRS3.1			AW241369	RAPGEF1	chr9	134452396	+	COL1A1	chr17	48266841	+
intron-3CDS	ENST00000372195	ENST00000225964		ChiTaRS3.1			AW241369	RAPGEF1	chr9	134452396	+	COL1A1	chr17	48266841	+
intron-3CDS	ENST00000372190	ENST00000225964		ChiTaRS3.1			AW241369	RAPGEF1	chr9	134452396	+	COL1A1	chr17	48266841	+
intron-3CDS	ENST00000481260	ENST00000225964		ChiTaRS3.1			AW241369	RAPGEF1	chr9	134452396	+	COL1A1	chr17	48266841	+
intron-intron	ENST00000312960	ENST00000312960		ChiTaRS3.1			AK023869	SIAH2	chr3	150475325	-	SIAH2	chr3	150477585	-
intron-intron	ENST00000312960	ENST00000472885		ChiTaRS3.1			AK023869	SIAH2	chr3	150475325	-	SIAH2	chr3	150477585	-
intron-intron	ENST00000472885	ENST00000312960		ChiTaRS3.1			AK023869	SIAH2	chr3	150475325	-	SIAH2	chr3	150477585	-
intron-intron	ENST00000472885	ENST00000472885		ChiTaRS3.1			AK023869	SIAH2	chr3	150475325	-	SIAH2	chr3	150477585	-
Frame-shit	ENST00000591462	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000591462	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000591462	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000252455	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000252455	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000252455	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000412601	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000412601	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000412601	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000592741	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000592741	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000592741	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000587327	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000587327	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000587327	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000589838	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
Frame-shit	ENST00000589838	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
5CDS-intron	ENST00000589838	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-3CDS	ENST00000591510	ENST00000453228		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-3CDS	ENST00000591510	ENST00000354410		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000558856		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000558812		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000338042		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000557785		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000449277		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
intron-intron	ENST00000591510	ENST00000557942		ChiTaRS3.1			BF742989	PRKCSH	chr19	11556212	-	MEF2A	chr15	100250918	+
In-frame	ENST00000332050	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332050	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000397938	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000406548	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000331029	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000414183	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000333395	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000525560		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000344954		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000527786		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000534087		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
In-frame	ENST00000332035	ENST00000281428		ChiTaRS3.1			JF290489	EWSR1	chr22	29683123	+	FLI1	chr11	128675261	+
intron-intron	ENST00000466368	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
intron-intron	ENST00000466368	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
intron-intron	ENST00000466368	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
intron-intron	ENST00000466368	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
intron-intron	ENST00000466368	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
intron-intron	ENST00000466368	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000485713	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000413384	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000310317	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000392826	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000466368		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000485713		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000413384		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000310317		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000392826		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
5CDS-intron	ENST00000461735	ENST00000461735		ChiTaRS3.1			DA571099	SLC4A2	chr7	150767319	+	SLC4A2	chr7	150765169	+
3UTR-3CDS	ENST00000244745	ENST00000334126		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
3UTR-3CDS	ENST00000244745	ENST00000313663		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
3UTR-intron	ENST00000244745	ENST00000542452		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
3UTR-intron	ENST00000244745	ENST00000539061		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
intron-3CDS	ENST00000543472	ENST00000334126		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
intron-3CDS	ENST00000543472	ENST00000313663		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
intron-intron	ENST00000543472	ENST00000542452		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
intron-intron	ENST00000543472	ENST00000539061		ChiTaRS3.1			DB315449	SOX4	chr6	21597111	-	C2CD3	chr11	73753123	+
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893509	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-3UTR	ENST00000377795	ENST00000558123		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000377795	ENST00000260359		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000377795	ENST00000450318		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000377795	ENST00000450592		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000377795	ENST00000559596		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000377795	ENST00000414849		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000377795	ENST00000560747		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000377795	ENST00000560177		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-3UTR	ENST00000353334	ENST00000558123		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000353334	ENST00000260359		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000353334	ENST00000450318		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000353334	ENST00000450592		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000353334	ENST00000559596		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000353334	ENST00000414849		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000353334	ENST00000560747		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000353334	ENST00000560177		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-3UTR	ENST00000524315	ENST00000558123		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000524315	ENST00000260359		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000524315	ENST00000450318		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000524315	ENST00000450592		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000524315	ENST00000559596		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000524315	ENST00000414849		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000524315	ENST00000560747		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000524315	ENST00000560177		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-3UTR	ENST00000009530	ENST00000558123		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000009530	ENST00000260359		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000009530	ENST00000450318		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000009530	ENST00000450592		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000009530	ENST00000559596		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-5UTR	ENST00000009530	ENST00000414849		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000009530	ENST00000560747		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-intron	ENST00000009530	ENST00000560177		ChiTaRS3.1			DB129419	CD74	chr5	149792230	-	NUSAP1	chr15	41625069	+
intron-3UTR	ENST00000321356	ENST00000328252		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000321356	ENST00000534838		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000321356	ENST00000483254		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-3UTR	ENST00000409769	ENST00000328252		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000409769	ENST00000534838		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000409769	ENST00000483254		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-3UTR	ENST00000434813	ENST00000328252		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000434813	ENST00000534838		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000434813	ENST00000483254		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-3UTR	ENST00000492793	ENST00000328252		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000492793	ENST00000534838		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
intron-intron	ENST00000492793	ENST00000483254		ChiTaRS3.1			BF085289	CLK1	chr2	201722483	+	PAPPA	chr9	119162784	-
3UTR-intron	ENST00000290200	ENST00000395146		ChiTaRS3.1			AW364499	IL10RB	chr21	34668974	+	AFF1	chr4	88044323	+
3UTR-intron	ENST00000290200	ENST00000307808		ChiTaRS3.1			AW364499	IL10RB	chr21	34668974	+	AFF1	chr4	88044323	+
3UTR-intron	ENST00000290200	ENST00000544085		ChiTaRS3.1			AW364499	IL10RB	chr21	34668974	+	AFF1	chr4	88044323	+
3UTR-intron	ENST00000290200	ENST00000511996		ChiTaRS3.1			AW364499	IL10RB	chr21	34668974	+	AFF1	chr4	88044323	+
5CDS-5UTR	ENST00000300850	ENST00000295901		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000300850	ENST00000492933		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-intron	ENST00000300850	ENST00000394431		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000300850	ENST00000482510		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000295901		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000492933		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-intron	ENST00000394979	ENST00000394431		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
5CDS-5UTR	ENST00000394979	ENST00000482510		ChiTaRS3.1			CD626169	ZNF646	chr16	31088783	-	PSMD6	chr3	64009108	-
intron-intron	ENST00000326682	ENST00000593699		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000326682	ENST00000372499		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000326682	ENST00000496424		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000337331	ENST00000593699		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000337331	ENST00000372499		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000337331	ENST00000496424		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000476742	ENST00000593699		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000476742	ENST00000372499		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000476742	ENST00000496424		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000343113	ENST00000593699		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000343113	ENST00000372499		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000343113	ENST00000496424		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000383282	ENST00000593699		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000383282	ENST00000372499		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000383282	ENST00000496424		ChiTaRS3.1			CA397439	NPHP3	chr3	132436897	-	C10orf11	chr10	77765423	-
intron-intron	ENST00000462274	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000462274	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000462274	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000462274	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000338785	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000338785	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000338785	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000338785	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000451934	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000451934	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000451934	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000451934	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000321219	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000321219	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000321219	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000321219	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000339659	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000339659	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000339659	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000339659	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398960	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398960	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398960	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398960	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398956	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398956	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398956	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000398956	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000455387	ENST00000389811		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000455387	ENST00000439055		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000455387	ENST00000340561		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
intron-intron	ENST00000455387	ENST00000496981		ChiTaRS3.1			BF333889	DYRK1A	chr21	38782650	+	ACOXL	chr2	111812719	+
5CDS-3UTR	ENST00000439123	ENST00000379802		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000439123	ENST00000418664		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000508776	ENST00000379802		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000508776	ENST00000418664		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000296464	ENST00000379802		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000296464	ENST00000418664		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000505726	ENST00000379802		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
5CDS-3UTR	ENST00000505726	ENST00000418664		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
intron-3UTR	ENST00000515262	ENST00000379802		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
intron-3UTR	ENST00000515262	ENST00000418664		ChiTaRS3.1			BF746859	HSPA4L	chr4	128753956	-	DSP	chr6	7586608	+
intron-3CDS	ENST00000311106	ENST00000405271		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000311106	ENST00000263735		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000513085	ENST00000405271		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000513085	ENST00000263735		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000508626	ENST00000405271		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000508626	ENST00000263735		ChiTaRS3.1			CV313519	PCSK1	chr5	95751490	+	EPCAM	chr2	47606120	+
intron-3CDS	ENST00000346234	ENST00000357395		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-3CDS	ENST00000346234	ENST00000358025		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-3CDS	ENST00000346234	ENST00000344113		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000341472		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000356081		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000554584		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000555002		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000394768		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000556725		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000553455		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000555022		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000554805		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000458046		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000346234	ENST00000441438		ChiTaRS3.1			AW935999	OSTF1	chr9	77752773	-	SYNE2	chr14	64691734	-
intron-intron	ENST00000256689	ENST00000366767		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000366769		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000366764		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000334218		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000366766		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000535525		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000366765		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000256689	ENST00000488131		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000366767		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000366769		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000366764		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000334218		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000366766		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000535525		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000366765		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000551374	ENST00000488131		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000366767		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000366769		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000366764		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000334218		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000366766		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000535525		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000366765		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
intron-intron	ENST00000547252	ENST00000488131		ChiTaRS3.1			AW900209	SLC38A2	chr12	46752665	+	CDC42BPA	chr1	227495664	+
Frame-shit	ENST00000508802	ENST00000508802		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
Frame-shit	ENST00000508802	ENST00000261439		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
5CDS-intron	ENST00000508802	ENST00000402522		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
5CDS-intron	ENST00000508802	ENST00000407365		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
Frame-shit	ENST00000261439	ENST00000508802		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
Frame-shit	ENST00000261439	ENST00000261439		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
5CDS-intron	ENST00000261439	ENST00000402522		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
5CDS-intron	ENST00000261439	ENST00000407365		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-3CDS	ENST00000402522	ENST00000508802		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-3CDS	ENST00000402522	ENST00000261439		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-intron	ENST00000402522	ENST00000402522		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-intron	ENST00000402522	ENST00000407365		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-3CDS	ENST00000407365	ENST00000508802		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-3CDS	ENST00000407365	ENST00000261439		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-intron	ENST00000407365	ENST00000402522		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
intron-intron	ENST00000407365	ENST00000407365		ChiTaRS3.1			BI910369	TBC1D1	chr4	38091688	+	TBC1D1	chr4	38046098	-
Frame-shit	ENST00000318627	ENST00000318627		ChiTaRS3.1			CN481799	FIBIN	chr11	27016576	+	FIBIN	chr11	27016157	+
intron-3CDS	ENST00000286301	ENST00000336898		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000286301	ENST00000376282		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000529095		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000526177		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000533784		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000529721		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000286301	ENST00000533805		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000286301	ENST00000443276		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000515239	ENST00000336898		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000515239	ENST00000376282		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000529095		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000526177		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000533784		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000529721		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000515239	ENST00000533805		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000515239	ENST00000443276		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000543093	ENST00000336898		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000543093	ENST00000376282		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000529095		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000526177		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000533784		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000529721		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-intron	ENST00000543093	ENST00000533805		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3UTR	ENST00000543093	ENST00000443276		ChiTaRS3.1			BQ368509	CSF1R	chr5	149449513	+	GDPD5	chr11	75146622	+
intron-3CDS	ENST00000405555	ENST00000356239		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-3CDS	ENST00000405555	ENST00000358100		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-3CDS	ENST00000405555	ENST00000359028		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-intron	ENST00000405555	ENST00000394564		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-intron	ENST00000405555	ENST00000491695		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-3CDS	ENST00000266214	ENST00000356239		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-3CDS	ENST00000266214	ENST00000358100		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-3CDS	ENST00000266214	ENST00000359028		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-intron	ENST00000266214	ENST00000394564		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-intron	ENST00000266214	ENST00000491695		ChiTaRS3.1			T07089	SCARF2	chr22	20779797	+	AKAP9	chr7	91722582	+
intron-intron	ENST00000321265	ENST00000523819		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-3UTR	ENST00000321265	ENST00000518448		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000321265	ENST00000536633		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000321265	ENST00000546351		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000321265	ENST00000318462		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000321265	ENST00000276699		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000321265	ENST00000522648		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000523819		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-3UTR	ENST00000484772	ENST00000518448		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000536633		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000546351		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000318462		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000276699		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000484772	ENST00000522648		ChiTaRS3.1			BU676699	NUDC	chr1	27181910	-	FAM83A	chr8	124221512	-
intron-intron	ENST00000315249	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000315249	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000580569	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000268850	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000378516	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000584655	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000394597	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000447669	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000415395	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000315249		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000580569		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000268850		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000378516		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000584655		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000394597		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000447669		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000415395		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000413582	ENST00000413582		ChiTaRS3.1			BF804789	RFFL	chr17	33359715	-	RFFL	chr17	33359691	+
intron-intron	ENST00000264018	ENST00000264018		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000264018	ENST00000534980		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000264018	ENST00000526070		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000534980	ENST00000264018		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000534980	ENST00000534980		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000534980	ENST00000526070		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000526070	ENST00000264018		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000526070	ENST00000534980		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-intron	ENST00000526070	ENST00000526070		ChiTaRS3.1			BE934709	DDX6	chr11	118622362	+	DDX6	chr11	118618929	+
intron-3CDS	ENST00000335154	ENST00000274811		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-5UTR	ENST00000335154	ENST00000537487		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000335154	ENST00000509404		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-3CDS	ENST00000550488	ENST00000274811		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-5UTR	ENST00000550488	ENST00000537487		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000550488	ENST00000509404		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-3CDS	ENST00000352151	ENST00000274811		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-5UTR	ENST00000352151	ENST00000537487		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000352151	ENST00000509404		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-3CDS	ENST00000293590	ENST00000274811		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-5UTR	ENST00000293590	ENST00000537487		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000293590	ENST00000509404		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-3CDS	ENST00000550668	ENST00000274811		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-5UTR	ENST00000550668	ENST00000537487		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000550668	ENST00000509404		ChiTaRS3.1			AL834489	FMNL3	chr12	50100989	-	RNF44	chr5	175959069	-
intron-intron	ENST00000326448	ENST00000404260		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000403625		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000406374		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000406039		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000478569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000490016		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000403666		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000405643		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000261569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000326448	ENST00000407621		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000404260		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000403625		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000406374		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000406039		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000478569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000490016		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000403666		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000405643		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000261569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000483465	ENST00000407621		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000404260		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000403625		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000406374		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000406039		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000478569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000490016		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000403666		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000405643		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000261569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000496589	ENST00000407621		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000404260		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000403625		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000406374		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000406039		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000478569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000490016		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000403666		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000405643		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000261569		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000477495	ENST00000407621		ChiTaRS3.1			BE764189	IFT80	chr3	160150177	+	MAST4	chr5	66440069	-
intron-intron	ENST00000505350	ENST00000372989		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000491602		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000454200		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000276141		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000455616		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000263033		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000505350	ENST00000372981		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000372989		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000491602		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000454200		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000276141		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000455616		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000263033		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000457016	ENST00000372981		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000372989		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000491602		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000454200		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000276141		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000455616		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000263033		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000257430	ENST00000372981		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000372989		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000491602		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000454200		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000276141		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000455616		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000263033		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
3UTR-intron	ENST00000508376	ENST00000372981		ChiTaRS3.1			BQ346429	APC	chr5	112181077	+	SYTL4	chrX	99980976	-
intron-intron	ENST00000381166	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000381166	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000381166	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000381166	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000381166	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000427855	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000427855	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000427855	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000427855	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000427855	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000340738	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000340738	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000340738	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000340738	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000340738	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554301	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554301	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554301	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554301	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554301	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000555445	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000555445	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000555445	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000555445	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000555445	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554314	ENST00000400259		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554314	ENST00000344548		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554314	ENST00000315554		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554314	ENST00000498236		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000554314	ENST00000421089		ChiTaRS3.1			BE840889	PAPLN	chr14	73733591	+	CDC42	chr1	22395071	+
intron-intron	ENST00000368655	ENST00000324446		ChiTaRS3.1			AU141549	GATAD2B	chr1	153838801	-	TTTY14	chrY	21154678	-
intron-3CDS	ENST00000245323	ENST00000245323		ChiTaRS3.1			W22529	EFNB2	chr13	107144881	+	EFNB2	chr13	107145762	-
intron-intron	ENST00000266383	ENST00000256062		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000551659		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000552618		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000319685		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000539277		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000381224		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000256062		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000551659		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000552618		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000319685		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000539277		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000381224		ChiTaRS3.1			BE070329	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000504570	ENST00000504570		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-3UTR	ENST00000504570	ENST00000382051		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000504570	ENST00000503434		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000504570	ENST00000510033		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
3UTR-intron	ENST00000382051	ENST00000504570		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
3UTR-3UTR	ENST00000382051	ENST00000382051		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
3UTR-intron	ENST00000382051	ENST00000503434		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
3UTR-intron	ENST00000382051	ENST00000510033		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000503434	ENST00000504570		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-3UTR	ENST00000503434	ENST00000382051		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000503434	ENST00000503434		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000503434	ENST00000510033		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000510033	ENST00000504570		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-3UTR	ENST00000510033	ENST00000382051		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000510033	ENST00000503434		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
intron-intron	ENST00000510033	ENST00000510033		ChiTaRS3.1			BG996029	SLC34A2	chr4	25679051	-	SLC34A2	chr4	25679893	+
Frame-shit	ENST00000366577	ENST00000366577		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-intron	ENST00000366577	ENST00000418145		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-intron	ENST00000366577	ENST00000535889		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-3UTR	ENST00000366577	ENST00000470570		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-3CDS	ENST00000418145	ENST00000366577		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-intron	ENST00000418145	ENST00000418145		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-intron	ENST00000418145	ENST00000535889		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-3UTR	ENST00000418145	ENST00000470570		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
Frame-shit	ENST00000535889	ENST00000366577		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-intron	ENST00000535889	ENST00000418145		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-intron	ENST00000535889	ENST00000535889		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
5CDS-3UTR	ENST00000535889	ENST00000470570		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-3CDS	ENST00000470570	ENST00000366577		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-intron	ENST00000470570	ENST00000418145		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-intron	ENST00000470570	ENST00000535889		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-3UTR	ENST00000470570	ENST00000470570		ChiTaRS3.1			CV363529	MTR	chr1	237052621	-	MTR	chr1	237057750	+
intron-intron	ENST00000249601	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000249601	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000249601	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000249601	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000249601	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000249601	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000249601	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374170	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374170	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000374170	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374170	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000374170	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374170	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374170	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374172	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374172	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000374172	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374172	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000374172	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374172	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000374172	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417247	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417247	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000417247	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417247	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000417247	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417247	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417247	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000435790	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000435790	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000435790	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000435790	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000435790	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000435790	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000435790	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417912	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417912	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000417912	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417912	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000417912	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417912	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000417912	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000491108	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000491108	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000491108	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000491108	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000491108	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000491108	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000491108	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000477708	ENST00000434909		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000477708	ENST00000509504		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000477708	ENST00000311813		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000477708	ENST00000482461		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-3UTR	ENST00000477708	ENST00000441328		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000477708	ENST00000409899		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000477708	ENST00000409611		ChiTaRS3.1			EB387289	ARHGAP22	chr10	49700436	-	AQP1	chr7	30965008	+
intron-intron	ENST00000344691	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000344691	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000325074	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000325074	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000437180	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000437180	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000300305	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000300305	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000399240	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000399240	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000486278	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000486278	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000494829	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000494829	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000358356	ENST00000476359		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-intron	ENST00000358356	ENST00000297967		ChiTaRS3.1			BF359339	RUNX1	chr21	36203842	+	NLGN4Y	chrY	16915633	+
intron-3UTR	ENST00000326799	ENST00000424032		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000326799	ENST00000600321		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000326799	ENST00000344085		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000326799	ENST00000597976		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000326799	ENST00000422689		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000326799	ENST00000595099		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-3UTR	ENST00000376016	ENST00000424032		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000376016	ENST00000600321		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000376016	ENST00000344085		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000376016	ENST00000597976		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000376016	ENST00000422689		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000376016	ENST00000595099		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-3UTR	ENST00000375972	ENST00000424032		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000375972	ENST00000600321		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000375972	ENST00000344085		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000375972	ENST00000597976		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000375972	ENST00000422689		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000375972	ENST00000595099		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-3UTR	ENST00000463270	ENST00000424032		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000463270	ENST00000600321		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000463270	ENST00000344085		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000463270	ENST00000597976		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000463270	ENST00000422689		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000463270	ENST00000595099		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-3UTR	ENST00000477432	ENST00000424032		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000477432	ENST00000600321		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000477432	ENST00000344085		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000477432	ENST00000597976		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000477432	ENST00000422689		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000477432	ENST00000595099		ChiTaRS3.1			BF930789	YME1L1	chr10	27434461	+	ZNF880	chr19	52887206	-
intron-intron	ENST00000575800	ENST00000575800		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000575800	ENST00000301329		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000575800	ENST00000301328		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000575800	ENST00000536578		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000301329	ENST00000575800		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000301329	ENST00000301329		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000301329	ENST00000301328		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000301329	ENST00000536578		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000301328	ENST00000575800		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000301328	ENST00000301329		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000301328	ENST00000301328		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000301328	ENST00000536578		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000536578	ENST00000575800		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000536578	ENST00000301329		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3UTR	ENST00000536578	ENST00000301328		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-intron	ENST00000536578	ENST00000536578		ChiTaRS3.1			BU186599	GLOD4	chr17	663091	+	GLOD4	chr17	662983	-
intron-3CDS	ENST00000335255	ENST00000390237		ChiTaRS3.1			BE935069	FOXK2	chr17	80506688	+	IGKC	chr2	89156928	+
intron-3CDS	ENST00000529652	ENST00000390237		ChiTaRS3.1			BE935069	FOXK2	chr17	80506688	+	IGKC	chr2	89156928	+
intron-intron	ENST00000539801	ENST00000539801		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000539801	ENST00000381652		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000539801	ENST00000544510		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000539801	ENST00000487310		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000381652	ENST00000539801		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000381652	ENST00000381652		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000381652	ENST00000544510		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000381652	ENST00000487310		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000544510	ENST00000539801		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000544510	ENST00000381652		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000544510	ENST00000544510		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000544510	ENST00000487310		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000487310	ENST00000539801		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000487310	ENST00000381652		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000487310	ENST00000544510		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000487310	ENST00000487310		ChiTaRS3.1			BI025699	JAK2	chr9	5099259	-	JAK2	chr9	5099181	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			DA059679	CDR1	chrX	139866825	+	CDR1	chrX	139865330	+
intron-intron	ENST00000372980	ENST00000360652		ChiTaRS3.1			BE074649	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000372980	ENST00000356872		ChiTaRS3.1			BE074649	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000342272	ENST00000360652		ChiTaRS3.1			BE074649	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000342272	ENST00000356872		ChiTaRS3.1			BE074649	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000588705	ENST00000375375		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000588705	ENST00000420770		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000588705	ENST00000400661		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000256433	ENST00000375375		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000256433	ENST00000420770		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000256433	ENST00000400661		ChiTaRS3.1			BG957249	IER3IP1	chr18	44681952	-	PAX7	chr1	18985566	-
intron-intron	ENST00000159087	ENST00000159087		ChiTaRS3.1			BF852719	ANO8	chr19	17435223	-	ANO8	chr19	17435155	+
intron-3CDS	ENST00000256545	ENST00000256545		ChiTaRS3.1			BU607299	EMC7	chr15	34376527	+	EMC7	chr15	34382545	-
intron-intron	ENST00000256545	ENST00000532113		ChiTaRS3.1			BU607299	EMC7	chr15	34376527	+	EMC7	chr15	34382545	-
intron-3CDS	ENST00000532113	ENST00000256545		ChiTaRS3.1			BU607299	EMC7	chr15	34376527	+	EMC7	chr15	34382545	-
intron-intron	ENST00000532113	ENST00000532113		ChiTaRS3.1			BU607299	EMC7	chr15	34376527	+	EMC7	chr15	34382545	-
intron-intron	ENST00000540224	ENST00000540224		ChiTaRS3.1			BU161059	CREBL2	chr12	12795347	-	CREBL2	chr12	12795473	+
intron-3UTR	ENST00000540224	ENST00000228865		ChiTaRS3.1			BU161059	CREBL2	chr12	12795347	-	CREBL2	chr12	12795473	+
3UTR-intron	ENST00000228865	ENST00000540224		ChiTaRS3.1			BU161059	CREBL2	chr12	12795347	-	CREBL2	chr12	12795473	+
3UTR-3UTR	ENST00000228865	ENST00000228865		ChiTaRS3.1			BU161059	CREBL2	chr12	12795347	-	CREBL2	chr12	12795473	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807769	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
5CDS-intron	ENST00000402676	ENST00000333646		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000374102		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000374080		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000402676	ENST00000462984		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000333646		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000374102		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000374080		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000253332	ENST00000462984		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000333646		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000374102		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000374080		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000354675	ENST00000462984		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000333646		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000374102		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000374080		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
5CDS-intron	ENST00000359755	ENST00000462984		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000333646		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000374102		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000374080		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-intron	ENST00000490177	ENST00000462984		ChiTaRS3.1			BE005999	AKAP12	chr6	151670841	-	MED12	chrX	70346111	+
intron-3CDS	ENST00000418988	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000418988	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000418988	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000555531	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000555531	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000555531	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000419365	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000419365	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000419365	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000524606	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000524606	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000524606	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000396394	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000396394	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000396394	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000396393	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000396393	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000396393	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000530457	ENST00000389757		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-3CDS	ENST00000530457	ENST00000389759		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
intron-intron	ENST00000530457	ENST00000495123		ChiTaRS3.1			DA097339	PSMA1	chr11	14562045	+	PKP4	chr2	159433781	+
3UTR-3UTR	ENST00000253247	ENST00000223428		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
3UTR-3UTR	ENST00000253247	ENST00000375231		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
3UTR-intron	ENST00000253247	ENST00000472201		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
intron-3UTR	ENST00000581966	ENST00000223428		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
intron-3UTR	ENST00000581966	ENST00000375231		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
intron-intron	ENST00000581966	ENST00000472201		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
3UTR-3UTR	ENST00000535137	ENST00000223428		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
3UTR-3UTR	ENST00000535137	ENST00000375231		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
3UTR-intron	ENST00000535137	ENST00000472201		ChiTaRS3.1			BQ421599	NOL11	chr17	65739995	-	ZNF510	chr9	99519979	-
intron-3CDS	ENST00000358632	ENST00000358632		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000358632	ENST00000268053		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000358632	ENST00000419019		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000358632	ENST00000541301		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000358632	ENST00000467407		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000268053	ENST00000358632		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000268053	ENST00000268053		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000268053	ENST00000419019		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000268053	ENST00000541301		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000268053	ENST00000467407		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000419019	ENST00000358632		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000419019	ENST00000268053		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000419019	ENST00000419019		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000419019	ENST00000541301		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000419019	ENST00000467407		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000541301	ENST00000358632		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000541301	ENST00000268053		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000541301	ENST00000419019		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000541301	ENST00000541301		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000541301	ENST00000467407		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000467407	ENST00000358632		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000467407	ENST00000268053		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-3CDS	ENST00000467407	ENST00000419019		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000467407	ENST00000541301		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
intron-intron	ENST00000467407	ENST00000467407		ChiTaRS3.1			BE767819	CYP11A1	chr15	74631082	-	CYP11A1	chr15	74637441	-
5CDS-intron	ENST00000263734	ENST00000301335		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
5CDS-intron	ENST00000263734	ENST00000571650		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
5CDS-intron	ENST00000263734	ENST00000382147		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
5CDS-intron	ENST00000263734	ENST00000412517		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
5CDS-intron	ENST00000263734	ENST00000574274		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-intron	ENST00000467888	ENST00000301335		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-intron	ENST00000467888	ENST00000571650		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-intron	ENST00000467888	ENST00000382147		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-intron	ENST00000467888	ENST00000412517		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-intron	ENST00000467888	ENST00000574274		ChiTaRS3.1			BI054269	EPAS1	chr2	46608802	-	SLC43A2	chr17	1506743	-
intron-3UTR	ENST00000555917	ENST00000543760		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000555917	ENST00000366672		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-intron	ENST00000555917	ENST00000541865		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000555917	ENST00000485438		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000361956	ENST00000543760		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000361956	ENST00000366672		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-intron	ENST00000361956	ENST00000541865		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000361956	ENST00000485438		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000381280	ENST00000543760		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000381280	ENST00000366672		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-intron	ENST00000381280	ENST00000541865		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000381280	ENST00000485438		ChiTaRS3.1			AF130059	SMOC1	chr14	70352299	+	GALNT2	chr1	230415455	+
intron-3UTR	ENST00000374076	ENST00000357635		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-3UTR	ENST00000374076	ENST00000563119		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000374076	ENST00000565772		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000374076	ENST00000563706		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000374076	ENST00000457294		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-3UTR	ENST00000608611	ENST00000357635		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-3UTR	ENST00000608611	ENST00000563119		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000608611	ENST00000565772		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000608611	ENST00000563706		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000608611	ENST00000457294		ChiTaRS3.1			AL360199	TMEM222	chr1	27650731	+	FAM219B	chr15	75193545	-
intron-intron	ENST00000374675	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374675	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000374677	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000463972	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000423043	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000418477	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000486338	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000416369	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441854	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000477713	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000441953	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000431735	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000462670	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383214	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
5CDS-intron	ENST00000383213	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
3UTR-intron	ENST00000486373	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000443773	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000456261	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000374675		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000374677		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000463972		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000423043		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000418477		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000486338		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000416369		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000441854		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000477713		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000441953		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000431735		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000462670		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000383214		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000383213		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000486373		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000443773		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000456261		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000487655	ENST00000487655		ChiTaRS3.1			AW885689	SLC39A7	chr6	4401786	-	SLC39A7	chr6	4402353	+
intron-intron	ENST00000310926	ENST00000379933		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-3UTR	ENST00000310926	ENST00000379938		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000310926	ENST00000334984		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000310926	ENST00000349384		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000493729	ENST00000379933		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-3UTR	ENST00000493729	ENST00000379938		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000493729	ENST00000334984		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000493729	ENST00000349384		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000478651	ENST00000379933		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-3UTR	ENST00000478651	ENST00000379938		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000478651	ENST00000334984		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000478651	ENST00000349384		ChiTaRS3.1			AW845389	SLCO2A1	chr3	133724042	+	RREB1	chr6	7251441	+
intron-intron	ENST00000392521	ENST00000609205		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
intron-3UTR	ENST00000392521	ENST00000360270		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
intron-intron	ENST00000261833	ENST00000609205		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
intron-3UTR	ENST00000261833	ENST00000360270		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
intron-intron	ENST00000537607	ENST00000609205		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
intron-3UTR	ENST00000537607	ENST00000360270		ChiTaRS3.1			BF750909	CIT	chr12	120135041	-	MSN	chrX	64960674	+
5CDS-intron	ENST00000356805	ENST00000234590		ChiTaRS3.1			BF926899	SPTBN1	chr2	54894747	-	ENO1	chr1	8931100	+
intron-intron	ENST00000333896	ENST00000234590		ChiTaRS3.1			BF926899	SPTBN1	chr2	54894747	-	ENO1	chr1	8931100	+
5UTR-intron	ENST00000393829	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000393829	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000393829	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000546249	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000546249	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000546249	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000537728	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000537728	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000537728	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000264649	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000264649	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000264649	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000585525	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000585525	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000585525	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000343619	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000343619	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
5UTR-intron	ENST00000343619	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000544137	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000544137	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000544137	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000587797	ENST00000336648		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000587797	ENST00000399120		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000587797	ENST00000482273		ChiTaRS3.1			BF362589	ATP6V0A1	chr17	40610923	-	HLCS	chr21	38206638	-
intron-intron	ENST00000360001	ENST00000413021		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-3UTR	ENST00000360001	ENST00000219345		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000360001	ENST00000566188		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000360001	ENST00000444212		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000360001	ENST00000568599		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000263741	ENST00000413021		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-3UTR	ENST00000263741	ENST00000219345		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000263741	ENST00000566188		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000263741	ENST00000444212		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000263741	ENST00000568599		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000545427	ENST00000413021		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-3UTR	ENST00000545427	ENST00000219345		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000545427	ENST00000566188		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000545427	ENST00000444212		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000545427	ENST00000568599		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000459994	ENST00000413021		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-3UTR	ENST00000459994	ENST00000219345		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000459994	ENST00000566188		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000459994	ENST00000444212		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-intron	ENST00000459994	ENST00000568599		ChiTaRS3.1			T11609	SDF4	chr1	1159256	-	PLA2G15	chr16	68294391	-
intron-5UTR	ENST00000284509	ENST00000229854		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000284509	ENST00000596288		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000284509	ENST00000419835		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000284509	ENST00000476448		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000559829	ENST00000229854		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000559829	ENST00000596288		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000559829	ENST00000419835		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000559829	ENST00000476448		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000558959	ENST00000229854		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000558959	ENST00000596288		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000558959	ENST00000419835		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-intron	ENST00000558959	ENST00000476448		ChiTaRS3.1			DA340269	ATP8B4	chr15	50166494	-	MCM3	chr6	52149531	-
intron-5UTR	ENST00000569532	ENST00000338639		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000569532	ENST00000493678		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000569532	ENST00000377493		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000569532	ENST00000377491		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000569532	ENST00000377488		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000569532	ENST00000497113		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000304381	ENST00000338639		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000304381	ENST00000493678		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000304381	ENST00000377493		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000304381	ENST00000377491		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000304381	ENST00000377488		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000304381	ENST00000497113		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000421369	ENST00000338639		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000421369	ENST00000493678		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000421369	ENST00000377493		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000421369	ENST00000377491		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000421369	ENST00000377488		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000421369	ENST00000497113		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000561963	ENST00000338639		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000561963	ENST00000493678		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000561963	ENST00000377493		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000561963	ENST00000377491		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000561963	ENST00000377488		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-intron	ENST00000561963	ENST00000497113		ChiTaRS3.1			DA079029	TMC7	chr16	19060249	+	PARK7	chr1	8021771	+
intron-5UTR	ENST00000324589	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000324589	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000324589	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000324589	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000349752	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000349752	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000349752	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000349752	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000406653	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000406653	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000406653	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000406653	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000356174	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000356174	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000356174	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000356174	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000420311	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000420311	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000420311	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000420311	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000486564	ENST00000368305		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-5UTR	ENST00000486564	ENST00000368304		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000486564	ENST00000489664		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
intron-intron	ENST00000486564	ENST00000368302		ChiTaRS3.1			AK024039	GALNT14	chr2	31147064	-	LAMTOR2	chr1	156024587	+
5CDS-intron	ENST00000343674	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000343674	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000343674	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000532868	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000532868	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000532868	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000528615	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000528615	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000528615	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000395574	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000395574	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000395574	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000543978	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000543978	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000543978	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000527911	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000527911	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000527911	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000456247	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000456247	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000456247	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000421244	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000421244	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000421244	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000318201	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000318201	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000318201	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000454345	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000454345	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
5CDS-intron	ENST00000454345	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
intron-intron	ENST00000525434	ENST00000320934		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
intron-intron	ENST00000525434	ENST00000540028		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
intron-intron	ENST00000525434	ENST00000529458		ChiTaRS3.1			BG945849	DGKZ	chr11	46398738	-	PCSK7	chr11	117096141	+
3UTR-3UTR	ENST00000211998	ENST00000211998		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-3UTR	ENST00000211998	ENST00000372755		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-intron	ENST00000211998	ENST00000478896		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-intron	ENST00000211998	ENST00000417648		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-3UTR	ENST00000372755	ENST00000211998		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-3UTR	ENST00000372755	ENST00000372755		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-intron	ENST00000372755	ENST00000478896		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
3UTR-intron	ENST00000372755	ENST00000417648		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-3UTR	ENST00000478896	ENST00000211998		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-3UTR	ENST00000478896	ENST00000372755		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-intron	ENST00000478896	ENST00000478896		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-intron	ENST00000478896	ENST00000417648		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-3UTR	ENST00000417648	ENST00000211998		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-3UTR	ENST00000417648	ENST00000372755		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-intron	ENST00000417648	ENST00000478896		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-intron	ENST00000417648	ENST00000417648		ChiTaRS3.1			BU608049	VCL	chr10	75879672	-	VCL	chr10	75879238	+
intron-3CDS	ENST00000240100	ENST00000553521		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-3CDS	ENST00000240100	ENST00000394366		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000553548		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000557154		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000451983		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000553635		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-3UTR	ENST00000240100	ENST00000556587		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000555349		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240100	ENST00000554021		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-3CDS	ENST00000240101	ENST00000553521		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-3CDS	ENST00000240101	ENST00000394366		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000553548		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000557154		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000451983		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000553635		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-3UTR	ENST00000240101	ENST00000556587		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000555349		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000240101	ENST00000554021		ChiTaRS3.1			BF802699	DUSP4	chr8	29190802	-	SRSF5	chr14	70238017	+
intron-intron	ENST00000260702	ENST00000340482		ChiTaRS3.1			BI018469	LOXL4	chr10	100008717	+	MPO	chr17	56350354	+
intron-intron	ENST00000260702	ENST00000225275		ChiTaRS3.1			BI018469	LOXL4	chr10	100008717	+	MPO	chr17	56350354	+
intron-intron	ENST00000260702	ENST00000578493		ChiTaRS3.1			BI018469	LOXL4	chr10	100008717	+	MPO	chr17	56350354	+
5CDS-3UTR	ENST00000248958	ENST00000389039		ChiTaRS3.1			AI700319	SDF2L1	chr22	21998410	-	DUOX2	chr15	45385646	+
5CDS-3UTR	ENST00000248958	ENST00000603300		ChiTaRS3.1			AI700319	SDF2L1	chr22	21998410	-	DUOX2	chr15	45385646	+
intron-intron	ENST00000204726	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000204726	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000204726	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000450791	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000450791	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000450791	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000456883	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000456883	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000456883	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000537452	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000537452	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000537452	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000545875	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000545875	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000545875	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000534967	ENST00000336498		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000534967	ENST00000414545		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000534967	ENST00000510076		ChiTaRS3.1			AW129589	GOLGA3	chr12	133402779	-	ARHGAP10	chr4	148779303	+
intron-intron	ENST00000337344	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000337344	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000337344	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000337344	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000337344	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375477	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375477	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375477	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375477	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375477	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375479	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375479	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375479	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375479	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375479	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000493650	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000493650	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000493650	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000493650	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000493650	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375459	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375459	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375459	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375459	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375459	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000246505	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000246505	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000246505	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000246505	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000246505	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375457	ENST00000395715		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375457	ENST00000220888		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375457	ENST00000519076		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375457	ENST00000520276		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000375457	ENST00000519674		ChiTaRS3.1			BF750129	PCID2	chr13	113837546	-	TRPS1	chr8	116477741	+
intron-intron	ENST00000450793	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000450793	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000538141	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000538141	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000380180	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000380180	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000318007	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000318007	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000437932	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000437932	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000317968	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000317968	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000542407	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000542407	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000508216	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000508216	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000514743	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000514743	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000380176	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000380176	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000359265	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000359265	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000512274	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000512274	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000504489	ENST00000359653		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000504489	ENST00000471421		ChiTaRS3.1			AW803539	PDLIM5	chr4	95453230	-	ZRANB1	chr10	126666961	+
intron-intron	ENST00000339399	ENST00000339399		ChiTaRS3.1			BF751669	ANP32B	chr9	100747593	+	ANP32B	chr9	100747784	-
intron-intron	ENST00000339399	ENST00000473205		ChiTaRS3.1			BF751669	ANP32B	chr9	100747593	+	ANP32B	chr9	100747784	-
intron-intron	ENST00000473205	ENST00000339399		ChiTaRS3.1			BF751669	ANP32B	chr9	100747593	+	ANP32B	chr9	100747784	-
intron-intron	ENST00000473205	ENST00000473205		ChiTaRS3.1			BF751669	ANP32B	chr9	100747593	+	ANP32B	chr9	100747784	-
intron-3UTR	ENST00000452400	ENST00000272233		ChiTaRS3.1			BF088409	NCOA2	chr8	71246573	+	RHOB	chr2	20648927	-
intron-3UTR	ENST00000267974	ENST00000272233		ChiTaRS3.1			BF088409	NCOA2	chr8	71246573	+	RHOB	chr2	20648927	-
intron-3UTR	ENST00000524223	ENST00000272233		ChiTaRS3.1			BF088409	NCOA2	chr8	71246573	+	RHOB	chr2	20648927	-
intron-3UTR	ENST00000273153	ENST00000273153		ChiTaRS3.1			CN402169	CSRNP1	chr3	39183464	-	CSRNP1	chr3	39184475	-
intron-3UTR	ENST00000273153	ENST00000514182		ChiTaRS3.1			CN402169	CSRNP1	chr3	39183464	-	CSRNP1	chr3	39184475	-
intron-3UTR	ENST00000514182	ENST00000273153		ChiTaRS3.1			CN402169	CSRNP1	chr3	39183464	-	CSRNP1	chr3	39184475	-
intron-3UTR	ENST00000514182	ENST00000514182		ChiTaRS3.1			CN402169	CSRNP1	chr3	39183464	-	CSRNP1	chr3	39184475	-
intron-intron	ENST00000327040	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000327040	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000440756	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000286485	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000428502	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000523619	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000400098		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000400100		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000400097		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000553597		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000390687		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000346403		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000554227		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000577565		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000520789	ENST00000444203		ChiTaRS3.1			AW894859	PSD3	chr8	18533584	+	SNRPN	chr15	25248001	+
intron-intron	ENST00000433496	ENST00000433496		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000433496	ENST00000392481		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000433496	ENST00000296273		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-intron	ENST00000392481	ENST00000433496		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000392481	ENST00000392481		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000392481	ENST00000296273		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-intron	ENST00000296273	ENST00000433496		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000296273	ENST00000392481		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-5UTR	ENST00000296273	ENST00000296273		ChiTaRS3.1			M87339	RFC4	chr3	186510723	+	RFC4	chr3	186524250	-
intron-intron	ENST00000379834	ENST00000467442		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000476809		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000485419		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000337808		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000527095		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000412423		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000460298		ChiTaRS3.1			BQ334149	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-3CDS	ENST00000303575	ENST00000404625		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000401651		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000258743		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000420258		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000407492		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000401630		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000303575	ENST00000406575		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-3CDS	ENST00000557670	ENST00000404625		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000401651		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000258743		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000420258		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000407492		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000401630		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
intron-intron	ENST00000557670	ENST00000406575		ChiTaRS3.1			BE619899	TMED10	chr14	75598821	+	IL6	chr7	22771050	-
In-frame	ENST00000368301	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368301	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000368301	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000361308	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000361308	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000347559	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000347559	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368300	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000368300	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368299	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000368299	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000448611	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000448611	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000368297	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000368297	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000473598	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000473598	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
In-frame	ENST00000392353	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
5CDS-3UTR	ENST00000392353	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000368301		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000361308		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000347559		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000368300		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000368299		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000448611		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000368297		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000473598		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3CDS	ENST00000496738	ENST00000392353		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3UTR	ENST00000496738	ENST00000496738		ChiTaRS3.1			AA852769	LMNA	chr1	156104673	-	LMNA	chr1	156105753	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW451889	MALAT1	chr11	65267830	+	MALAT1	chr11	65266597	+
5CDS-intron	ENST00000167462	ENST00000371227		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371249		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000306402		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000353505		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371246		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000347291		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000393949		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371247		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000607232		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371245		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000361941		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000277982		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000354106		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371239		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000371241		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000167462	ENST00000474353		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371227		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371249		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000306402		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000353505		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371246		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000347291		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000393949		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371247		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000607232		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371245		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000361941		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000277982		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000354106		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371239		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000371241		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000375227	ENST00000474353		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371227		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371249		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000306402		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000353505		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371246		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000347291		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000393949		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371247		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000607232		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371245		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000361941		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000277982		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000354106		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371239		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000371241		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000392550	ENST00000474353		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371227		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371249		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000306402		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000353505		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371246		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000347291		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000393949		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371247		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000607232		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371245		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000361941		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000277982		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000354106		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371239		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000371241		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-intron	ENST00000578363	ENST00000474353		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371227		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371249		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000306402		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000353505		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371246		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000347291		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000393949		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371247		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000607232		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371245		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000361941		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000277982		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000354106		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371239		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000371241		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
5CDS-intron	ENST00000577200	ENST00000474353		ChiTaRS3.1			BF870979	LLGL2	chr17	73565184	+	SORBS1	chr10	97303892	+
intron-3CDS	ENST00000379277	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379277	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379277	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379277	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379277	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000492419	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000492419	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000492419	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000492419	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000492419	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000379286	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379286	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379286	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379286	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379286	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000379279	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379279	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379279	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379279	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379279	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000379283	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379283	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379283	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379283	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000379283	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000342308	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000342308	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000342308	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000342308	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000342308	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000202834	ENST00000321394		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000202834	ENST00000544255		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000202834	ENST00000420894		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000202834	ENST00000392168		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-intron	ENST00000202834	ENST00000546023		ChiTaRS3.1			BE466819	TMEM230	chr20	5080572	+	TCP1	chr6	160209138	+
intron-3CDS	ENST00000306749	ENST00000440973		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000306749	ENST00000338799		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000456483		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000443427		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000206249		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000406599		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000306749	ENST00000427531		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3UTR	ENST00000306749	ENST00000482101		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000579758	ENST00000440973		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3CDS	ENST00000579758	ENST00000338799		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000456483		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000443427		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000206249		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000406599		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000579758	ENST00000427531		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-3UTR	ENST00000579758	ENST00000482101		ChiTaRS3.1			AF172069	FASN	chr17	80046335	-	ESR1	chr6	152265458	+
intron-intron	ENST00000356388	ENST00000357395		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000358025		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000344113		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000341472		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000356081		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000554584		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000555002		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000394768		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000556725		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000553455		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000555022		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000554805		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000458046		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000356388	ENST00000441438		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000357395		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000358025		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000344113		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000341472		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000356081		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000554584		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000555002		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000394768		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000556725		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000553455		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000555022		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000554805		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000458046		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000443619	ENST00000441438		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000357395		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000358025		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000344113		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000341472		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000356081		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000554584		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000555002		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000394768		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000556725		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000553455		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000555022		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000554805		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000458046		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-intron	ENST00000474228	ENST00000441438		ChiTaRS3.1			AA456989	SPRED2	chr2	65632964	-	SYNE2	chr14	64351333	+
intron-3UTR	ENST00000547776	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000547776	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000329257	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000329257	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000547010	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000547010	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000341752	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000341752	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000549558	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000549558	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000550693	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000550693	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000549025	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000549025	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000549493	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000549493	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000547446	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000547446	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000333732	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000333732	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000546568	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000546568	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000332712	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000332712	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000546960	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000546960	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000550833	ENST00000406625		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-intron	ENST00000550833	ENST00000498475		ChiTaRS3.1			AK021579	ANKS1B	chr12	99597100	-	ASB3	chr2	53897589	-
intron-3UTR	ENST00000491145	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000491145	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000491145	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000395720	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000395720	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000395720	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000357698	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000357698	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000357698	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000380230	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000380230	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000380230	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000496660	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000496660	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000496660	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000319580	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000319580	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000319580	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000395723	ENST00000358252		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-3UTR	ENST00000395723	ENST00000532437		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
intron-intron	ENST00000395723	ENST00000530920		ChiTaRS3.1			BF838059	ANKDD1A	chr15	65218757	-	TNKS1BP1	chr11	57067402	-
In-frame	ENST00000367602	ENST00000367602		ChiTaRS3.1			BG978499	QSOX1	chr1	180165458	+	QSOX1	chr1	180144455	+
In-frame	ENST00000367602	ENST00000367600		ChiTaRS3.1			BG978499	QSOX1	chr1	180165458	+	QSOX1	chr1	180144455	+
In-frame	ENST00000367600	ENST00000367602		ChiTaRS3.1			BG978499	QSOX1	chr1	180165458	+	QSOX1	chr1	180144455	+
In-frame	ENST00000367600	ENST00000367600		ChiTaRS3.1			BG978499	QSOX1	chr1	180165458	+	QSOX1	chr1	180144455	+
intron-intron	ENST00000398576	ENST00000398576		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000398576	ENST00000323076		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000398576	ENST00000435666		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000398576	ENST00000460190		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000323076	ENST00000398576		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000323076	ENST00000323076		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000323076	ENST00000435666		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000323076	ENST00000460190		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000435666	ENST00000398576		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000435666	ENST00000323076		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000435666	ENST00000435666		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000435666	ENST00000460190		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000460190	ENST00000398576		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000460190	ENST00000323076		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000460190	ENST00000435666		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
intron-intron	ENST00000460190	ENST00000460190		ChiTaRS3.1			DA670949	LCP1	chr13	46730706	-	LCP1	chr13	46732659	-
3UTR-3CDS	ENST00000442796	ENST00000404241		ChiTaRS3.1			BC055409	LINC00312	chr3	8615220	+	ATF4	chr22	39918548	+
3UTR-3CDS	ENST00000442796	ENST00000337304		ChiTaRS3.1			BC055409	LINC00312	chr3	8615220	+	ATF4	chr22	39918548	+
3UTR-3CDS	ENST00000442796	ENST00000396680		ChiTaRS3.1			BC055409	LINC00312	chr3	8615220	+	ATF4	chr22	39918548	+
intron-intron	ENST00000297313	ENST00000297313		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000344277		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000522225		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000276500		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000517405		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000297313		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000344277		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000522225		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000276500		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000517405		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000297313		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000344277		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000522225		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000276500		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000517405		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000297313		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000344277		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000522225		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000276500		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000517405		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000297313		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000344277		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000522225		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000276500		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000517405		ChiTaRS3.1			BU680699	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-3CDS	ENST00000326621	ENST00000326621		ChiTaRS3.1			BG981989	VSIG2	chr11	124618326	+	VSIG2	chr11	124617430	-
intron-intron	ENST00000326621	ENST00000403470		ChiTaRS3.1			BG981989	VSIG2	chr11	124618326	+	VSIG2	chr11	124617430	-
intron-3CDS	ENST00000403470	ENST00000326621		ChiTaRS3.1			BG981989	VSIG2	chr11	124618326	+	VSIG2	chr11	124617430	-
intron-intron	ENST00000403470	ENST00000403470		ChiTaRS3.1			BG981989	VSIG2	chr11	124618326	+	VSIG2	chr11	124617430	-
intron-intron	ENST00000334047	ENST00000321196		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000334047	ENST00000548305		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000334047	ENST00000549919		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000370207	ENST00000321196		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000370207	ENST00000548305		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000370207	ENST00000549919		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000480356	ENST00000321196		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000480356	ENST00000548305		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
intron-intron	ENST00000480356	ENST00000549919		ChiTaRS3.1			BE936579	F3	chr1	94995775	-	TMTC2	chr12	83148126	-
5CDS-5UTR	ENST00000331803	ENST00000331803		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000331803	ENST00000341253		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000331803	ENST00000395564		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-3UTR	ENST00000331803	ENST00000482015		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000331803	ENST00000429491		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000341253	ENST00000331803		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000341253	ENST00000341253		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000341253	ENST00000395564		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-3UTR	ENST00000341253	ENST00000482015		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000341253	ENST00000429491		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000395564	ENST00000331803		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000395564	ENST00000341253		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000395564	ENST00000395564		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-3UTR	ENST00000395564	ENST00000482015		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
5CDS-5UTR	ENST00000395564	ENST00000429491		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000482015	ENST00000331803		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000482015	ENST00000341253		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000482015	ENST00000395564		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-3UTR	ENST00000482015	ENST00000482015		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000482015	ENST00000429491		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000429491	ENST00000331803		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000429491	ENST00000341253		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000429491	ENST00000395564		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-3UTR	ENST00000429491	ENST00000482015		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-5UTR	ENST00000429491	ENST00000429491		ChiTaRS3.1			BG005429	UPP1	chr7	48141530	+	UPP1	chr7	48134359	+
intron-intron	ENST00000606098	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000606098	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000606098	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000606098	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000606098	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000606098	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000285083	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000605932	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000435829	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000544043	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000606098		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000285083		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000605932		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000435829		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000544043		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000607329	ENST00000607329		ChiTaRS3.1			CF887349	OXNAD1	chr3	16356177	-	OXNAD1	chr3	16356537	+
intron-intron	ENST00000254480	ENST00000254480		ChiTaRS3.1			AA470499	SMARCC1	chr3	47785050	+	SMARCC1	chr3	47784377	+
intron-intron	ENST00000254480	ENST00000425518		ChiTaRS3.1			AA470499	SMARCC1	chr3	47785050	+	SMARCC1	chr3	47784377	+
intron-intron	ENST00000425518	ENST00000254480		ChiTaRS3.1			AA470499	SMARCC1	chr3	47785050	+	SMARCC1	chr3	47784377	+
intron-intron	ENST00000425518	ENST00000425518		ChiTaRS3.1			AA470499	SMARCC1	chr3	47785050	+	SMARCC1	chr3	47784377	+
intron-intron	ENST00000307845	ENST00000558014		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000537942		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000536845		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000558816		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000389425		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000355997		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000389433		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000389432		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000358066		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000389428		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000316364		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000307845	ENST00000354744		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000558014		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000537942		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000536845		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000558816		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000389425		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000355997		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000389433		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000389432		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000358066		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000389428		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000316364		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-intron	ENST00000381765	ENST00000354744		ChiTaRS3.1			DA213399	HPCAL1	chr2	10500837	-	SEMA6D	chr15	48060775	+
intron-3UTR	ENST00000425354	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000425354	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000425354	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000394426	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000394426	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000327550	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000327550	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000338561	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000338561	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543726	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000543726	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000369005		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000513429		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000515273		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000515603		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000453444		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000358010		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000334433		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000369001		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000369000		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000360561		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000368999		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000369004		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-3UTR	ENST00000543762	ENST00000260733		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
intron-intron	ENST00000543762	ENST00000493951		ChiTaRS3.1			T29399	RARG	chr12	53607009	-	TACC2	chr10	124013648	-
3UTR-3CDS	ENST00000405315	ENST00000405315		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000405315	ENST00000407032		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000485798		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000405315	ENST00000263273		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000405315		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000407032	ENST00000407032		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000485798		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000407032	ENST00000263273		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000405315		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3CDS	ENST00000485798	ENST00000407032		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000485798		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-intron	ENST00000485798	ENST00000263273		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000405315		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-3CDS	ENST00000263273	ENST00000407032		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000485798		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
3UTR-intron	ENST00000263273	ENST00000263273		ChiTaRS3.1			BE296919	NUCB1	chr19	49426280	+	NUCB1	chr19	49416781	+
intron-3UTR	ENST00000463284	ENST00000375147		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000463284	ENST00000491445		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000358435	ENST00000375147		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000358435	ENST00000491445		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000405021	ENST00000375147		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000405021	ENST00000491445		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000372879	ENST00000375147		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3UTR	ENST00000372879	ENST00000491445		ChiTaRS3.1			AW877449	TOMM7	chr7	22852892	+	NCBP1	chr9	100435853	-
intron-3CDS	ENST00000402038	ENST00000221166		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000402038	ENST00000518131		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000521540		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000437366		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000402038	ENST00000433454		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000221166		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-3CDS	ENST00000492350	ENST00000518131		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000521540		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000437366		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
intron-intron	ENST00000492350	ENST00000433454		ChiTaRS3.1			AI659589	PARG	chr10	51562346	-	NEFM	chr8	24774986	-
3UTR-intron	ENST00000327134	ENST00000531326		ChiTaRS3.1			AW390149	PAK2	chr3	196556219	-	PTPN11	chr12	112946528	+
3UTR-intron	ENST00000327134	ENST00000392597		ChiTaRS3.1			AW390149	PAK2	chr3	196556219	-	PTPN11	chr12	112946528	+
3UTR-3UTR	ENST00000327134	ENST00000351677		ChiTaRS3.1			AW390149	PAK2	chr3	196556219	-	PTPN11	chr12	112946528	+
intron-intron	ENST00000468573	ENST00000468573		ChiTaRS3.1			BE143319	CHRM3	chr1	239855197	-	CHRM3	chr1	239844738	+
intron-intron	ENST00000468573	ENST00000255380		ChiTaRS3.1			BE143319	CHRM3	chr1	239855197	-	CHRM3	chr1	239844738	+
intron-intron	ENST00000255380	ENST00000468573		ChiTaRS3.1			BE143319	CHRM3	chr1	239855197	-	CHRM3	chr1	239844738	+
intron-intron	ENST00000255380	ENST00000255380		ChiTaRS3.1			BE143319	CHRM3	chr1	239855197	-	CHRM3	chr1	239844738	+
intron-intron	ENST00000336890	ENST00000494118		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-intron	ENST00000336890	ENST00000281523		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-intron	ENST00000333070	ENST00000494118		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-intron	ENST00000333070	ENST00000281523		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-intron	ENST00000373564	ENST00000494118		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-intron	ENST00000373564	ENST00000281523		ChiTaRS3.1			BF513139	LCK	chr1	32728376	-	ZNF385D	chr3	21616508	+
intron-3CDS	ENST00000255631	ENST00000255631		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000255631	ENST00000433386		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000255631	ENST00000376343		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000255631	ENST00000587922		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000433386	ENST00000255631		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000433386	ENST00000433386		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000433386	ENST00000376343		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000433386	ENST00000587922		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000376343	ENST00000255631		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000376343	ENST00000433386		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000376343	ENST00000376343		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000376343	ENST00000587922		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000587922	ENST00000255631		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000587922	ENST00000433386		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000587922	ENST00000376343		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-3CDS	ENST00000587922	ENST00000587922		ChiTaRS3.1			BG954019	HSPBP1	chr19	55773909	-	HSPBP1	chr19	55789116	-
intron-intron	ENST00000377122	ENST00000377122		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377122	ENST00000417816		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377122	ENST00000377159		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377122	ENST00000377119		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377122	ENST00000464278		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000417816	ENST00000377122		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000417816	ENST00000417816		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000417816	ENST00000377159		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000417816	ENST00000377119		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000417816	ENST00000464278		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377159	ENST00000377122		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377159	ENST00000417816		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377159	ENST00000377159		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377159	ENST00000377119		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377159	ENST00000464278		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377119	ENST00000377122		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377119	ENST00000417816		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377119	ENST00000377159		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377119	ENST00000377119		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000377119	ENST00000464278		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000464278	ENST00000377122		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000464278	ENST00000417816		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000464278	ENST00000377159		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000464278	ENST00000377119		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-intron	ENST00000464278	ENST00000464278		ChiTaRS3.1			BF329099	NEBL	chr10	21215000	-	NEBL	chr10	21215104	+
intron-3CDS	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425245	ABL1	chr9	133614221	+	BCR	chr22	23632569	+
intron-3CDS	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425245	ABL1	chr9	133614221	+	BCR	chr22	23632569	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425245	ABL1	chr9	133614221	+	BCR	chr22	23632569	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425245	ABL1	chr9	133614221	+	BCR	chr22	23632569	+
In-frame	ENST00000358161	ENST00000251588		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000358161	ENST00000568545		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000358161	ENST00000540986		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000358161	ENST00000301694		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-intron	ENST00000358161	ENST00000562862		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
In-frame	ENST00000372739	ENST00000251588		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372739	ENST00000568545		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372739	ENST00000540986		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372739	ENST00000301694		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-intron	ENST00000372739	ENST00000562862		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
In-frame	ENST00000372731	ENST00000251588		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372731	ENST00000568545		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372731	ENST00000540986		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-5UTR	ENST00000372731	ENST00000301694		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
5CDS-intron	ENST00000372731	ENST00000562862		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-3CDS	ENST00000475367	ENST00000251588		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-5UTR	ENST00000475367	ENST00000568545		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-5UTR	ENST00000475367	ENST00000540986		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-5UTR	ENST00000475367	ENST00000301694		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-intron	ENST00000475367	ENST00000562862		ChiTaRS3.1			BE763539	SPTAN1	chr9	131346222	+	NARFL	chr16	787264	-
intron-intron	ENST00000373585	ENST00000181839		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000373585	ENST00000340829		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000373585	ENST00000484589		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000466265	ENST00000181839		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000466265	ENST00000340829		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000466265	ENST00000484589		ChiTaRS3.1			CN485349	DDX50	chr10	70706100	-	CDK13	chr7	40037264	-
intron-intron	ENST00000396251	ENST00000382778		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000396251	ENST00000351808		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000396251	ENST00000319980		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000396251	ENST00000537103		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000396251	ENST00000461115		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000340369	ENST00000382778		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000340369	ENST00000351808		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000340369	ENST00000319980		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000340369	ENST00000537103		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000340369	ENST00000461115		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000421646	ENST00000382778		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000421646	ENST00000351808		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000421646	ENST00000319980		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000421646	ENST00000537103		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-intron	ENST00000421646	ENST00000461115		ChiTaRS3.1			BE837609	XIRP1	chr3	39229072	+	IFT88	chr13	21237594	+
intron-3UTR	ENST00000261699	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000261699	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000261699	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000261699	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000261699	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000267436	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000267436	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000267436	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000267436	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000267436	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000421284	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000421284	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000421284	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000421284	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000421284	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555423	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000555423	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555423	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555423	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000555423	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555610	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000555610	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555610	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000555610	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000555610	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000556393	ENST00000298569		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-5UTR	ENST00000556393	ENST00000393728		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000556393	ENST00000393725		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-3UTR	ENST00000556393	ENST00000510164		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000556393	ENST00000533553		ChiTaRS3.1			AW300486	L2HGDH	chr14	50712601	+	KIAA1191	chr5	175774557	+
intron-intron	ENST00000502517	ENST00000330909		ChiTaRS3.1			AW753106	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000402939		ChiTaRS3.1			AW753106	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000483466		ChiTaRS3.1			AW753106	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000497477		ChiTaRS3.1			AW753106	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-intron	ENST00000502517	ENST00000470990		ChiTaRS3.1			AW753106	LINC00483	chr17	48836433	+	MAGI1	chr3	65764844	-
intron-5UTR	ENST00000336868	ENST00000374561		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000336868	ENST00000486541		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000577098	ENST00000374561		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000577098	ENST00000486541		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000575801	ENST00000374561		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000575801	ENST00000486541		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000538650	ENST00000374561		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000538650	ENST00000486541		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-5UTR	ENST00000537628	ENST00000374561		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-intron	ENST00000537628	ENST00000486541		ChiTaRS3.1			A17546	NXN	chr17	819499	-	ID3	chr1	23885969	-
intron-3UTR	ENST00000380934	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380934	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380934	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380959	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380959	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380959	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380953	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380953	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380953	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397575	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397575	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397575	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397581	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397581	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397581	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397579	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000397579	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000397579	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000543693	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000543693	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000543693	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380924	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380924	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380924	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380921	ENST00000380934		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-3UTR	ENST00000380921	ENST00000380959		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000380953		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000397575		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000397581		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000397579		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000543693		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000380924		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
intron-intron	ENST00000380921	ENST00000380921		ChiTaRS3.1			BI495276	NFIB	chr9	14087230	+	NFIB	chr9	14087156	-
3UTR-3CDS	ENST00000257013	ENST00000368869		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
3UTR-3CDS	ENST00000257013	ENST00000358776		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
3UTR-3UTR	ENST00000257013	ENST00000496730		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
3UTR-3CDS	ENST00000464369	ENST00000368869		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
3UTR-3CDS	ENST00000464369	ENST00000358776		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
3UTR-3UTR	ENST00000464369	ENST00000496730		ChiTaRS3.1			EB388356	FAM127A	chrX	134167195	+	ACADSB	chr10	124800157	+
intron-intron	ENST00000265018	ENST00000318560		ChiTaRS3.1			U19410	FAM184B	chr4	17643129	-	ABL1	chr9	133651494	+
5UTR-3UTR	ENST00000264832	ENST00000394609		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000405240		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000357376		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000317610		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000357732		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000337526		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000394611		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000404909		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-5UTR	ENST00000264832	ENST00000486085		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000354474		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
5UTR-3UTR	ENST00000264832	ENST00000402434		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000394609		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000405240		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000357376		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000317610		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000357732		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000337526		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000394611		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000404909		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-5UTR	ENST00000423829	ENST00000486085		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000354474		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000423829	ENST00000402434		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000394609		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000405240		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000357376		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000317610		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000357732		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000337526		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000394611		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000404909		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-5UTR	ENST00000585443	ENST00000486085		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000354474		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-3UTR	ENST00000585443	ENST00000402434		ChiTaRS3.1			BG537856	ICAM1	chr19	10381644	+	RTN4	chr2	55200230	-
intron-intron	ENST00000513000	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000513000	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000509777	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000509777	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000262992	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000262992	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000308502	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000308502	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000508116	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000508116	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000507861	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000507861	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000506217	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000506217	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000508084	ENST00000319359		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000508084	ENST00000497465		ChiTaRS3.1			BG990026	INPP4B	chr4	142957065	+	ELL3	chr15	44084546	+
intron-intron	ENST00000231061	ENST00000431446		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000231061	ENST00000496459		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000231061	ENST00000570135		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000231061	ENST00000320676		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-3UTR	ENST00000231061	ENST00000562646		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-3UTR	ENST00000231061	ENST00000565438		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000537849	ENST00000431446		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000537849	ENST00000496459		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000537849	ENST00000570135		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-intron	ENST00000537849	ENST00000320676		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-3UTR	ENST00000537849	ENST00000562646		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
intron-3UTR	ENST00000537849	ENST00000565438		ChiTaRS3.1			AA972866	SPARC	chr5	151042333	+	RBMX	chrX	135956530	-
5CDS-3UTR	ENST00000582707	ENST00000216492		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000582707	ENST00000334654		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-intron	ENST00000582707	ENST00000553866		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000400266	ENST00000216492		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000400266	ENST00000334654		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-intron	ENST00000400266	ENST00000553866		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000383589	ENST00000216492		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000383589	ENST00000334654		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-intron	ENST00000383589	ENST00000553866		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000261601	ENST00000216492		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-3UTR	ENST00000261601	ENST00000334654		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
5CDS-intron	ENST00000261601	ENST00000553866		ChiTaRS3.1			BP386096	USP14	chr18	197658	-	CHGA	chr14	93401385	+
intron-3UTR	ENST00000011619	ENST00000011619		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000011619	ENST00000469916		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000011619	ENST00000539980		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-3UTR	ENST00000469916	ENST00000011619		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000469916	ENST00000469916		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000469916	ENST00000539980		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-3UTR	ENST00000539980	ENST00000011619		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000539980	ENST00000469916		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
intron-intron	ENST00000539980	ENST00000539980		ChiTaRS3.1			AL119936	RANBP9	chr6	13621839	+	RANBP9	chr6	13621809	-
3UTR-3CDS	ENST00000006658	ENST00000006658		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000006658	ENST00000356488		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000006658	ENST00000393244		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3UTR	ENST00000006658	ENST00000511937		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000356488	ENST00000006658		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000356488	ENST00000356488		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000356488	ENST00000393244		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3UTR	ENST00000356488	ENST00000511937		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000393244	ENST00000006658		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000393244	ENST00000356488		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000393244	ENST00000393244		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3UTR	ENST00000393244	ENST00000511937		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000511937	ENST00000006658		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000511937	ENST00000356488		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3CDS	ENST00000511937	ENST00000393244		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
3UTR-3UTR	ENST00000511937	ENST00000511937		ChiTaRS3.1			AI609346	SPATA20	chr17	48633146	-	SPATA20	chr17	48632616	+
intron-3CDS	ENST00000393772	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000379308	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000379306	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000379305	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000436908	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000313221	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000456695	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000455112	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
intron-3CDS	ENST00000471074	ENST00000300086		ChiTaRS3.1			BF934116	FBXL13	chr7	102584987	+	TERF2IP	chr16	75690424	+
Frame-shit	ENST00000376929	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000376929	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000376929	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000376929	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000376929	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000376929	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-3CDS	ENST00000506690	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000506690	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000506690	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000506690	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000506690	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000506690	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
Frame-shit	ENST00000389805	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000389805	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000389805	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000389805	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000389805	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000389805	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
Frame-shit	ENST00000402874	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000402874	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000402874	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000402874	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000402874	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000402874	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-3CDS	ENST00000510187	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000510187	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000510187	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000510187	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000510187	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000510187	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
Frame-shit	ENST00000360718	ENST00000376929		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000360718	ENST00000506690		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000360718	ENST00000389805		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000360718	ENST00000402874		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000360718	ENST00000510187		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
5CDS-intron	ENST00000360718	ENST00000360718		ChiTaRS3.1			BU171956	SQSTM1	chr5	179260710	-	SQSTM1	chr5	179260745	+
intron-intron	ENST00000310682	ENST00000310682		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-3UTR	ENST00000310682	ENST00000394266		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000310682	ENST00000219315		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000310682	ENST00000418480		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
3UTR-intron	ENST00000394266	ENST00000310682		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
3UTR-3UTR	ENST00000394266	ENST00000394266		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
3UTR-intron	ENST00000394266	ENST00000219315		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
3UTR-intron	ENST00000394266	ENST00000418480		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000219315	ENST00000310682		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-3UTR	ENST00000219315	ENST00000394266		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000219315	ENST00000219315		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000219315	ENST00000418480		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000418480	ENST00000310682		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-3UTR	ENST00000418480	ENST00000394266		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000418480	ENST00000219315		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-intron	ENST00000418480	ENST00000418480		ChiTaRS3.1			BG287566	SETD6	chr16	58554085	+	SETD6	chr16	58554051	-
intron-3CDS	ENST00000424085	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000424085	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000257075	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000257075	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000373747	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000373747	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000426105	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000426105	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000440538	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000440538	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000373741	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000373741	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000423018	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000423018	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000373742	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000373742	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-3CDS	ENST00000490546	ENST00000258484		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
intron-intron	ENST00000490546	ENST00000409654		ChiTaRS3.1			BE836626	PUM1	chr1	31434640	-	EPC2	chr2	149528720	+
5CDS-intron	ENST00000323013	ENST00000344423		ChiTaRS3.1			DA372666	RRP7A	chr22	42915720	-	ZNF395	chr8	28232901	-
5CDS-intron	ENST00000323013	ENST00000523202		ChiTaRS3.1			DA372666	RRP7A	chr22	42915720	-	ZNF395	chr8	28232901	-
5CDS-intron	ENST00000323013	ENST00000523095		ChiTaRS3.1			DA372666	RRP7A	chr22	42915720	-	ZNF395	chr8	28232901	-
5CDS-intron	ENST00000323013	ENST00000519730		ChiTaRS3.1			DA372666	RRP7A	chr22	42915720	-	ZNF395	chr8	28232901	-
3UTR-5UTR	ENST00000504986	ENST00000412331		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-5UTR	ENST00000504986	ENST00000381683		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-intron	ENST00000504986	ENST00000406934		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-intron	ENST00000504986	ENST00000476955		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
intron-5UTR	ENST00000513702	ENST00000412331		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
intron-5UTR	ENST00000513702	ENST00000381683		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
intron-intron	ENST00000513702	ENST00000406934		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
intron-intron	ENST00000513702	ENST00000476955		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-5UTR	ENST00000325094	ENST00000412331		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-5UTR	ENST00000325094	ENST00000381683		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-intron	ENST00000325094	ENST00000406934		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
3UTR-intron	ENST00000325094	ENST00000476955		ChiTaRS3.1			DA876636	TMEM33	chr4	41958873	+	EIF3L	chr22	38245426	+
intron-intron	ENST00000375078	ENST00000367462		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
intron-intron	ENST00000375078	ENST00000534846		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
intron-intron	ENST00000375078	ENST00000463404		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
intron-intron	ENST00000489020	ENST00000367462		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
intron-intron	ENST00000489020	ENST00000534846		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
intron-intron	ENST00000489020	ENST00000463404		ChiTaRS3.1			BE699216	CAMK2N1	chr1	20809388	+	BRINP3	chr1	190198781	-
Frame-shit	ENST00000225426	ENST00000225426		ChiTaRS3.1			BG115276	PSMB3	chr17	36918713	-	PSMB3	chr17	36909461	+
5CDS-intron	ENST00000495645	ENST00000375856		ChiTaRS3.1			BF753816	CHPF2	chr7	150932276	+	IRS2	chr13	110433111	+
5CDS-intron	ENST00000035307	ENST00000375856		ChiTaRS3.1			BF753816	CHPF2	chr7	150932276	+	IRS2	chr13	110433111	+
3UTR-3UTR	ENST00000495514	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-5UTR	ENST00000495514	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-3UTR	ENST00000495514	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000495514	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000495514	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-3UTR	ENST00000273395	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-5UTR	ENST00000273395	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-3UTR	ENST00000273395	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000273395	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000273395	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-3UTR	ENST00000355385	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-5UTR	ENST00000355385	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-3UTR	ENST00000355385	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000355385	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000355385	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000485230	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-5UTR	ENST00000485230	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000485230	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000485230	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000485230	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000484034	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-5UTR	ENST00000484034	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000484034	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000484034	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000484034	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000497495	ENST00000369905		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-5UTR	ENST00000497495	ENST00000470322		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-3UTR	ENST00000497495	ENST00000487599		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000497495	ENST00000545684		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
intron-intron	ENST00000497495	ENST00000446605		ChiTaRS3.1			AW956356	BOC	chr3	113005983	-	ACTR1A	chr10	104239746	-
3UTR-intron	ENST00000302068	ENST00000302068		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
3UTR-intron	ENST00000302068	ENST00000509493		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
3UTR-intron	ENST00000302068	ENST00000502545		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000302068		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000509493		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000509493	ENST00000502545		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000302068		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000509493		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
intron-intron	ENST00000502545	ENST00000502545		ChiTaRS3.1			AA491846	FGB	chr4	155492174	+	FGB	chr4	155492238	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BE766616	MALAT1	chr11	65272138	-	MALAT1	chr11	65272222	+
5CDS-intron	ENST00000372396	ENST00000262982		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
5CDS-intron	ENST00000372396	ENST00000542325		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
5CDS-intron	ENST00000372396	ENST00000396192		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
5CDS-intron	ENST00000372396	ENST00000469700		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
intron-intron	ENST00000463151	ENST00000262982		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
intron-intron	ENST00000463151	ENST00000542325		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
intron-intron	ENST00000463151	ENST00000396192		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
intron-intron	ENST00000463151	ENST00000469700		ChiTaRS3.1			BF196906	KDM4A	chr1	44169755	-	CSE1L	chr20	47663859	-
intron-intron	ENST00000360458	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000360458	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000422154	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000422154	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000451301	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000451301	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000433176	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000433176	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000423833	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000423833	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000441076	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000441076	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000492116	ENST00000378609		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
intron-intron	ENST00000492116	ENST00000472614		ChiTaRS3.1			AV717096	MORF4L2	chrX	102935090	-	GNB1	chr1	1778027	+
3UTR-3UTR	ENST00000054666	ENST00000054666		ChiTaRS3.1			BG171606	VAMP3	chr1	7840558	-	VAMP3	chr1	7840664	+
3UTR-intron	ENST00000054666	ENST00000470357		ChiTaRS3.1			BG171606	VAMP3	chr1	7840558	-	VAMP3	chr1	7840664	+
intron-3UTR	ENST00000470357	ENST00000054666		ChiTaRS3.1			BG171606	VAMP3	chr1	7840558	-	VAMP3	chr1	7840664	+
intron-intron	ENST00000470357	ENST00000470357		ChiTaRS3.1			BG171606	VAMP3	chr1	7840558	-	VAMP3	chr1	7840664	+
intron-3CDS	ENST00000304129	ENST00000388825		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000304129	ENST00000521722		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000304129	ENST00000517973		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-3CDS	ENST00000369271	ENST00000388825		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000369271	ENST00000521722		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000369271	ENST00000517973		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-3CDS	ENST00000545353	ENST00000388825		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000545353	ENST00000521722		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000545353	ENST00000517973		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-3CDS	ENST00000491814	ENST00000388825		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000491814	ENST00000521722		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
intron-intron	ENST00000491814	ENST00000517973		ChiTaRS3.1			BG990596	AFAP1L2	chr10	116056714	-	GPX3	chr5	150407015	-
3UTR-3UTR	ENST00000436587	ENST00000436587		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-intron	ENST00000436587	ENST00000467716		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-3UTR	ENST00000436587	ENST00000223122		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-intron	ENST00000436587	ENST00000402468		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-3UTR	ENST00000467716	ENST00000436587		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-intron	ENST00000467716	ENST00000467716		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-3UTR	ENST00000467716	ENST00000223122		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-intron	ENST00000467716	ENST00000402468		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-3UTR	ENST00000223122	ENST00000436587		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-intron	ENST00000223122	ENST00000467716		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-3UTR	ENST00000223122	ENST00000223122		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
3UTR-intron	ENST00000223122	ENST00000402468		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-3UTR	ENST00000402468	ENST00000436587		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-intron	ENST00000402468	ENST00000467716		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-3UTR	ENST00000402468	ENST00000223122		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
intron-intron	ENST00000402468	ENST00000402468		ChiTaRS3.1			AL134316	C1GALT1	chr7	7287218	-	C1GALT1	chr7	7287251	+
Frame-shit	ENST00000295834	ENST00000295834		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
Frame-shit	ENST00000295834	ENST00000393750		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
5CDS-5UTR	ENST00000295834	ENST00000495375		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
Frame-shit	ENST00000393750	ENST00000295834		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
Frame-shit	ENST00000393750	ENST00000393750		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
5CDS-5UTR	ENST00000393750	ENST00000495375		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
5UTR-3CDS	ENST00000495375	ENST00000295834		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
5UTR-3CDS	ENST00000495375	ENST00000393750		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
5UTR-5UTR	ENST00000495375	ENST00000495375		ChiTaRS3.1			CB163566	FABP1	chr2	88427473	+	FABP1	chr2	88425780	-
intron-3UTR	ENST00000396592	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000396592	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000396592	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000422365	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000422365	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000422365	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000492775	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000492775	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000492775	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000469823	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000469823	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000469823	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000313616	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000313616	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000313616	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000541540	ENST00000216492		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-3UTR	ENST00000541540	ENST00000334654		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000541540	ENST00000553866		ChiTaRS3.1			AI619546	MCMDC2	chr8	67834937	+	CHGA	chr14	93401339	+
intron-intron	ENST00000566780	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000566780	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000566780	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000406884	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000406884	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000406884	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000539474	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000539474	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000539474	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000402655	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000402655	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000402655	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000408984	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000408984	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000408984	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000355860	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000355860	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000355860	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000565791	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000565791	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000565791	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000569818	ENST00000268489		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000569818	ENST00000397992		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000569818	ENST00000558842		ChiTaRS3.1			AA555206	WWOX	chr16	78613793	-	ZFHX3	chr16	72952461	+
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			DQ177305	RUNX1	chr21	36228024	-	RUNX1T1	chr8	93077529	-
intron-intron	ENST00000592889	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592889	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592889	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592889	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000588992	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000588992	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000588992	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000588992	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000344990	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000344990	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000344990	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000344990	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000246532	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000246532	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000246532	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000246532	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592537	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592537	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592537	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000592537	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000587101	ENST00000400473		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000587101	ENST00000256925		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000587101	ENST00000585061		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-intron	ENST00000587101	ENST00000420687		ChiTaRS3.1			BF847726	IGFLR1	chr19	36233617	+	CABLES1	chr18	20786117	-
intron-3CDS	ENST00000319217	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000319217	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000319217	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000319217	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000319217	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541718	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541718	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541718	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541718	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000541718	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381022	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381022	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381022	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381022	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000381022	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541093	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541093	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000541093	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000541093	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000541093	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000538841	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000538841	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000538841	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000538841	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000538841	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000536827	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000536827	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000536827	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000536827	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000536827	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000447879	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000447879	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000447879	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000447879	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000447879	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381015	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381015	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000381015	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000381015	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000381015	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000546205	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000546205	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000546205	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000546205	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000546205	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000540202	ENST00000319217		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000540202	ENST00000541718		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-3CDS	ENST00000540202	ENST00000381022		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000541093		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000538841		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000536827		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000447879		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000381015		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000540202	ENST00000546205		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-5UTR	ENST00000540202	ENST00000540202		ChiTaRS3.1			BF954556	MPDZ	chr9	13126721	+	MPDZ	chr9	13138109	-
intron-intron	ENST00000607272	ENST00000607272		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
intron-intron	ENST00000607272	ENST00000234420		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
intron-intron	ENST00000607272	ENST00000540021		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
intron-intron	ENST00000607272	ENST00000538136		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000234420	ENST00000607272		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000234420	ENST00000234420		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000234420	ENST00000540021		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000234420	ENST00000538136		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000540021	ENST00000607272		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000540021	ENST00000234420		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000540021	ENST00000540021		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000540021	ENST00000538136		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000538136	ENST00000607272		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000538136	ENST00000234420		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000538136	ENST00000540021		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
5CDS-intron	ENST00000538136	ENST00000538136		ChiTaRS3.1			AW805096	MSH6	chr2	48028064	-	MSH6	chr2	48028122	+
intron-intron	ENST00000283148	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000283148	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000283148	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000540130	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000540130	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000540130	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409501	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409501	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409501	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409032	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409032	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000409032	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000428048	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000428048	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000428048	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000479621	ENST00000432306		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000479621	ENST00000393077		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000479621	ENST00000483122		ChiTaRS3.1			BF367966	UXS1	chr2	106710518	+	VTI1A	chr10	114374416	+
intron-intron	ENST00000256544	ENST00000273980		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000256544	ENST00000432496		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000256544	ENST00000361687		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000256544	ENST00000394706		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000256544	ENST00000394708		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000256544	ENST00000514689		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000273980		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000432496		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000361687		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000394706		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000394708		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-intron	ENST00000560915	ENST00000514689		ChiTaRS3.1			R01956	KATNBL1	chr15	34435197	-	TBCK	chr4	107014418	-
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB134886	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-intron	ENST00000245680	ENST00000245680		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000245680	ENST00000470204		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000245680	ENST00000409342		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000470204	ENST00000245680		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000470204	ENST00000470204		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000470204	ENST00000409342		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000409342	ENST00000245680		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000409342	ENST00000470204		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000409342	ENST00000409342		ChiTaRS3.1			AW182866	SLC35F5	chr2	114493824	+	SLC35F5	chr2	114485968	+
intron-intron	ENST00000238571	ENST00000238571		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-3UTR	ENST00000238571	ENST00000325680		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-3UTR	ENST00000238571	ENST00000552421		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-intron	ENST00000238571	ENST00000546901		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-intron	ENST00000325680	ENST00000238571		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-3UTR	ENST00000325680	ENST00000325680		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-3UTR	ENST00000325680	ENST00000552421		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-intron	ENST00000325680	ENST00000546901		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-intron	ENST00000552421	ENST00000238571		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-3UTR	ENST00000552421	ENST00000325680		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-3UTR	ENST00000552421	ENST00000552421		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
5CDS-intron	ENST00000552421	ENST00000546901		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-intron	ENST00000546901	ENST00000238571		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-3UTR	ENST00000546901	ENST00000325680		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-3UTR	ENST00000546901	ENST00000552421		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-intron	ENST00000546901	ENST00000546901		ChiTaRS3.1			AA420866	YLPM1	chr14	75301993	+	YLPM1	chr14	75302143	-
intron-intron	ENST00000564085	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564085	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000268533	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000568787	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000437314	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000563839	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000292123		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000592224		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000586934		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000454510		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000433404		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000588852		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-intron	ENST00000564031	ENST00000538656		ChiTaRS3.1			DY655726	NUDT7	chr16	77756393	-	SAFB	chr19	5666924	+
intron-3CDS	ENST00000338205	ENST00000338205		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000338205	ENST00000259335		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000338205	ENST00000374378		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000338205	ENST00000465499		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000259335	ENST00000338205		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000259335	ENST00000259335		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000259335	ENST00000374378		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000259335	ENST00000465499		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000374378	ENST00000338205		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000374378	ENST00000259335		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000374378	ENST00000374378		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000374378	ENST00000465499		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000465499	ENST00000338205		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-3CDS	ENST00000465499	ENST00000259335		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000465499	ENST00000374378		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000465499	ENST00000465499		ChiTaRS3.1			BI018816	KIAA0368	chr9	114131431	+	KIAA0368	chr9	114173419	-
intron-intron	ENST00000254636	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000254636	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000254636	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000254636	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000254636	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000254636	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000449247	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000410111	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000442664	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000409051	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000372572		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000372573		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000361346		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000361776		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000545068		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
intron-intron	ENST00000490238	ENST00000372571		ChiTaRS3.1			BF816706	IMMT	chr2	86398590	+	FOXJ3	chr1	42705688	+
5CDS-intron	ENST00000394667	ENST00000471595		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394667	ENST00000478469		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000251654		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000483687		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000490504		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000466072		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000482086		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000468777		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394667	ENST00000462637		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394667	ENST00000469217		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394667	ENST00000474833		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000502534	ENST00000471595		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000502534	ENST00000478469		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000251654		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000483687		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000490504		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000466072		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000482086		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000468777		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000502534	ENST00000462637		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000502534	ENST00000469217		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000502534	ENST00000474833		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394665	ENST00000471595		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394665	ENST00000478469		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000251654		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000483687		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000490504		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000466072		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000482086		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000468777		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394665	ENST00000462637		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394665	ENST00000469217		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394665	ENST00000474833		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000506397	ENST00000471595		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000506397	ENST00000478469		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000251654		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000483687		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000490504		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000466072		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000482086		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000468777		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000506397	ENST00000462637		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000506397	ENST00000469217		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000506397	ENST00000474833		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394668	ENST00000471595		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394668	ENST00000478469		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000251654		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000483687		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000490504		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000466072		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000482086		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000468777		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-5UTR	ENST00000394668	ENST00000462637		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394668	ENST00000469217		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
5CDS-intron	ENST00000394668	ENST00000474833		ChiTaRS3.1			AU126976	RPL34	chr4	109543328	+	PCCB	chr3	135969191	+
3UTR-3CDS	ENST00000358026	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000358026	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3UTR	ENST00000358026	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000344626	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000344626	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000344626	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000429416	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000429416	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3UTR	ENST00000429416	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000541122	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000541122	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000541122	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000589677	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000589677	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000589677	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000444061	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000444061	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000444061	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000590574	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000590574	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000590574	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000413806	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000413806	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3UTR	ENST00000413806	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000450717	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3CDS	ENST00000450717	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
3UTR-3UTR	ENST00000450717	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000538456	ENST00000370179		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3CDS	ENST00000538456	ENST00000370177		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000538456	ENST00000473620		ChiTaRS3.1			BF222816	SMARCA4	chr19	11172886	-	PPDPF	chr20	62153211	-
intron-3UTR	ENST00000244769	ENST00000299134		ChiTaRS3.1			BQ639696	ATXN1	chr6	16695543	-	SVOP	chr12	109304744	-
intron-3UTR	ENST00000436367	ENST00000299134		ChiTaRS3.1			BQ639696	ATXN1	chr6	16695543	-	SVOP	chr12	109304744	-
intron-3UTR	ENST00000467008	ENST00000299134		ChiTaRS3.1			BQ639696	ATXN1	chr6	16695543	-	SVOP	chr12	109304744	-
intron-intron	ENST00000430725	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000430725	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000430725	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000430725	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000430725	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000430725	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000430725	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000430725	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000325438	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000325438	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000325438	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000325438	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000325438	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000325438	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000325438	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000325438	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000458164	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000458164	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000458164	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000458164	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000458164	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000458164	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000458164	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000458164	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000447393	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000447393	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000447393	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000447393	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000447393	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000447393	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000447393	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000447393	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000547217	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000547217	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000547217	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000547217	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000547217	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000547217	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000547217	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000547217	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551743	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551743	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551743	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551743	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551743	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551743	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551743	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551743	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551801	ENST00000532456		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551801	ENST00000539648		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551801	ENST00000528499		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-5UTR	ENST00000551801	ENST00000263574		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551801	ENST00000345598		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551801	ENST00000338167		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551801	ENST00000278756		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
intron-intron	ENST00000551801	ENST00000543137		ChiTaRS3.1			DA405826	PACS2	chr14	105841155	-	APLP2	chr11	129990599	+
5CDS-intron	ENST00000271532	ENST00000390548		ChiTaRS3.1			AF343666	FCRL4	chr1	157566117	-	IGHG1	chr14	106170940	-
intron-intron	ENST00000448509	ENST00000390548		ChiTaRS3.1			AF343666	FCRL4	chr1	157566117	-	IGHG1	chr14	106170940	-
3UTR-3UTR	ENST00000535861	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000535861	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000535861	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000535861	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000318504	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318504	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318504	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318504	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000539731	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000539731	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000539731	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000539731	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000324823	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000324823	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000324823	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000324823	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000449285	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000449285	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000449285	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000449285	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000370268	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000370268	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000370268	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000370268	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
intron-3UTR	ENST00000370270	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
intron-intron	ENST00000370270	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
intron-intron	ENST00000370270	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
intron-intron	ENST00000370270	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000318529	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318529	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318529	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000318529	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-3UTR	ENST00000454925	ENST00000558401		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000454925	ENST00000559916		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000454925	ENST00000544417		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
3UTR-intron	ENST00000454925	ENST00000559220		ChiTaRS3.1			AW997596	ZNF185	chrX	152141128	+	B2M	chr15	45010424	-
intron-3CDS	ENST00000382110	ENST00000539068		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000382110	ENST00000536438		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000382110	ENST00000357266		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000382110	ENST00000540787		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000382110	ENST00000542713		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000324266	ENST00000539068		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000324266	ENST00000536438		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000324266	ENST00000357266		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000324266	ENST00000540787		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000324266	ENST00000542713		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000469147	ENST00000539068		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000469147	ENST00000536438		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000469147	ENST00000357266		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000469147	ENST00000540787		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-3CDS	ENST00000469147	ENST00000542713		ChiTaRS3.1			DB042736	TRAPPC12	chr2	3463314	+	FKBP5	chr6	35565056	-
intron-intron	ENST00000375664	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375664	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000375646	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000347934	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000354911	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000428935	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374875		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000265371		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374867		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000395995		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374821		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374822		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374823		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000374816		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-intron	ENST00000532233	ENST00000432372		ChiTaRS3.1			AW373556	WAC	chr10	28880511	+	NRP1	chr10	33536978	-
intron-3CDS	ENST00000377298	ENST00000455600		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-intron	ENST00000377298	ENST00000468041		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-3CDS	ENST00000361311	ENST00000455600		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-intron	ENST00000361311	ENST00000468041		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-3CDS	ENST00000377288	ENST00000455600		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-intron	ENST00000377288	ENST00000468041		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-3CDS	ENST00000477264	ENST00000455600		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-intron	ENST00000477264	ENST00000468041		ChiTaRS3.1			BP274296	CLSTN1	chr1	9801079	-	RUSC2	chr9	35560384	+
intron-intron	ENST00000367433	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367433	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367433	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367433	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367433	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367433	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000498426	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000367431	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000609185	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000451324	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000367433		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000498426		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000367431		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000609185		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000451324		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000294725	ENST00000294725		ChiTaRS3.1			CN286506	KCNT2	chr1	196249484	+	KCNT2	chr1	196249448	-
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835126	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
Frame-shit	ENST00000314970	ENST00000314970		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000314970	ENST00000515774		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000314970	ENST00000503752		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000314970	ENST00000512834		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
5CDS-intron	ENST00000314970	ENST00000510864		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
In-frame	ENST00000515774	ENST00000314970		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
In-frame	ENST00000515774	ENST00000515774		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
In-frame	ENST00000515774	ENST00000503752		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
In-frame	ENST00000515774	ENST00000512834		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
5CDS-intron	ENST00000515774	ENST00000510864		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000503752	ENST00000314970		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000503752	ENST00000515774		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000503752	ENST00000503752		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000503752	ENST00000512834		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
5CDS-intron	ENST00000503752	ENST00000510864		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000512834	ENST00000314970		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000512834	ENST00000515774		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000512834	ENST00000503752		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
Frame-shit	ENST00000512834	ENST00000512834		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
5CDS-intron	ENST00000512834	ENST00000510864		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
3UTR-3CDS	ENST00000510864	ENST00000314970		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
3UTR-3CDS	ENST00000510864	ENST00000515774		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
3UTR-3CDS	ENST00000510864	ENST00000503752		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
3UTR-3CDS	ENST00000510864	ENST00000512834		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
3UTR-intron	ENST00000510864	ENST00000510864		ChiTaRS3.1			CF130286	PRIMPOL	chr4	185615762	-	PRIMPOL	chr4	185612820	+
intron-3CDS	ENST00000241052	ENST00000440884		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000416682		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000429436		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000303622		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000216288		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000553942		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000241052	ENST00000335102		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000241052	ENST00000561071		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000440884		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000416682		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000429436		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000303622		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000216288		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000553942		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3CDS	ENST00000534710	ENST00000335102		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
intron-3UTR	ENST00000534710	ENST00000561071		ChiTaRS3.1			BI024396	CAT	chr11	34480167	-	MARK3	chr14	103958203	+
In-frame	ENST00000244230	ENST00000244230		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
In-frame	ENST00000244230	ENST00000498451		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
5CDS-intron	ENST00000244230	ENST00000468427		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000498451	ENST00000244230		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000498451	ENST00000498451		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-intron	ENST00000498451	ENST00000468427		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000468427	ENST00000244230		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000468427	ENST00000498451		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-intron	ENST00000468427	ENST00000468427		ChiTaRS3.1			CA315016	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-intron	ENST00000536774	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000536774	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000536774	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000536774	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000536774	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000327441	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000327441	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000327441	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000327441	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000327441	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539062	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539062	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539062	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539062	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539062	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000556451	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000556451	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000556451	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000556451	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000556451	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000396294	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000396294	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000396294	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000396294	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000396294	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000545536	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000545536	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000545536	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000545536	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000545536	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000537471	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000537471	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000537471	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000537471	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000537471	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539174	ENST00000526148		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539174	ENST00000525681		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539174	ENST00000339995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539174	ENST00000396525		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-intron	ENST00000539174	ENST00000525995		ChiTaRS3.1			BQ940036	MIPOL1	chr14	37676809	+	EIF4G2	chr11	10820022	-
intron-3UTR	ENST00000381844	ENST00000220772		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-3UTR	ENST00000381844	ENST00000379845		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-3UTR	ENST00000238081	ENST00000220772		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-3UTR	ENST00000238081	ENST00000379845		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-3UTR	ENST00000474715	ENST00000220772		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-3UTR	ENST00000474715	ENST00000379845		ChiTaRS3.1			CN271876	YWHAQ	chr2	9724332	+	SFRP1	chr8	41121036	-
intron-intron	ENST00000367328	ENST00000367328		ChiTaRS3.1			BQ893566	PLEKHG1	chr6	151147037	+	PLEKHG1	chr6	151138948	+
intron-intron	ENST00000367328	ENST00000358517		ChiTaRS3.1			BQ893566	PLEKHG1	chr6	151147037	+	PLEKHG1	chr6	151138948	+
intron-intron	ENST00000358517	ENST00000367328		ChiTaRS3.1			BQ893566	PLEKHG1	chr6	151147037	+	PLEKHG1	chr6	151138948	+
intron-intron	ENST00000358517	ENST00000358517		ChiTaRS3.1			BQ893566	PLEKHG1	chr6	151147037	+	PLEKHG1	chr6	151138948	+
intron-intron	ENST00000462274	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000462274	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000462274	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000462274	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000462274	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000338785	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000338785	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000338785	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000338785	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000338785	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000451934	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000451934	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000451934	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000451934	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000451934	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000321219	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000321219	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000321219	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000321219	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000321219	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000339659	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000339659	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000339659	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000339659	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000339659	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398960	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398960	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398960	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000398960	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000398960	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398956	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398956	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000398956	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000398956	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000398956	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000455387	ENST00000564353		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000455387	ENST00000345005		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-intron	ENST00000455387	ENST00000395066		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000455387	ENST00000348245		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
intron-3UTR	ENST00000455387	ENST00000352989		ChiTaRS3.1			BF884316	DYRK1A	chr21	38817557	-	CLK3	chr15	74919753	+
5CDS-intron	ENST00000263645	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000263645	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000492627	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000381036	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000526072	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
intron-intron	ENST00000524805	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000406775		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000342771		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000403018		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000481687	ENST00000489774		ChiTaRS3.1			AW498576	CD81	chr11	2418062	+	AUTS2	chr7	69183134	-
5CDS-intron	ENST00000356798	ENST00000215071		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000356798	ENST00000602911		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-5UTR	ENST00000356798	ENST00000592035		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000358164	ENST00000215071		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-intron	ENST00000358164	ENST00000602911		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5CDS-5UTR	ENST00000358164	ENST00000592035		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000454514	ENST00000215071		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000454514	ENST00000602911		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000454514	ENST00000592035		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000433423	ENST00000215071		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000433423	ENST00000602911		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000433423	ENST00000592035		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000568012	ENST00000215071		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-intron	ENST00000568012	ENST00000602911		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
intron-5UTR	ENST00000568012	ENST00000592035		ChiTaRS3.1			AX794816	ITGAL	chr16	30518119	-	PSMD8	chr19	38866122	+
5UTR-3CDS	ENST00000236877	ENST00000328771		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
5UTR-intron	ENST00000236877	ENST00000471451		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
5UTR-3CDS	ENST00000539381	ENST00000328771		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
5UTR-intron	ENST00000539381	ENST00000471451		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
5UTR-3CDS	ENST00000542837	ENST00000328771		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
5UTR-intron	ENST00000542837	ENST00000471451		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
intron-3CDS	ENST00000601757	ENST00000328771		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
intron-intron	ENST00000601757	ENST00000471451		ChiTaRS3.1			DA080126	SLC8A2	chr19	47975045	-	DHX34	chr19	47885235	+
intron-3CDS	ENST00000370532	ENST00000448907		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000371827		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000357083		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000371824		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000371823		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000371821		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-3CDS	ENST00000370532	ENST00000371819		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-intron	ENST00000370532	ENST00000492299		ChiTaRS3.1			BY798206	CDR1	chrX	139866259	+	ELAVL4	chr1	50666827	+
intron-5UTR	ENST00000378609	ENST00000250498		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000489532		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000538631		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000378609	ENST00000543337		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-5UTR	ENST00000472614	ENST00000250498		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000489532		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000538631		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-intron	ENST00000472614	ENST00000543337		ChiTaRS3.1			BC013646	GNB1	chr1	1717154	+	DAD1	chr14	23058136	-
intron-3UTR	ENST00000368034	ENST00000325006		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368034	ENST00000446544		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368034	ENST00000531335		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368034	ENST00000474594		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368034	ENST00000446212		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368034	ENST00000490911		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368034	ENST00000472554		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368033	ENST00000325006		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368033	ENST00000446544		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368033	ENST00000531335		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368033	ENST00000474594		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368033	ENST00000446212		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368033	ENST00000490911		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368033	ENST00000472554		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000322302	ENST00000325006		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000322302	ENST00000446544		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000322302	ENST00000531335		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000322302	ENST00000474594		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000322302	ENST00000446212		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000322302	ENST00000490911		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000322302	ENST00000472554		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368032	ENST00000325006		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368032	ENST00000446544		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368032	ENST00000531335		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368032	ENST00000474594		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000368032	ENST00000446212		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368032	ENST00000490911		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000368032	ENST00000472554		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000481677	ENST00000325006		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000481677	ENST00000446544		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000481677	ENST00000531335		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000481677	ENST00000474594		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-3UTR	ENST00000481677	ENST00000446212		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000481677	ENST00000490911		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000481677	ENST00000472554		ChiTaRS3.1			AW947006	CD244	chr1	160810825	+	AHCYL2	chr7	129069615	-
intron-intron	ENST00000261866	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000261866	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000535302	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000535302	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000427534	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000427534	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000558319	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000558319	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000558253	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000558253	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000559193	ENST00000468573		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
intron-intron	ENST00000559193	ENST00000255380		ChiTaRS3.1			AW812006	SPG11	chr15	44876116	-	CHRM3	chr1	239903964	-
3UTR-3CDS	ENST00000373886	ENST00000475548		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
3UTR-3CDS	ENST00000373886	ENST00000358743		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
3UTR-3CDS	ENST00000373886	ENST00000347557		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
3UTR-3CDS	ENST00000373886	ENST00000333137		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
3UTR-intron	ENST00000373886	ENST00000404574		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000263103	ENST00000475548		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000263103	ENST00000358743		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000263103	ENST00000347557		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000263103	ENST00000333137		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-intron	ENST00000263103	ENST00000404574		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000476684	ENST00000475548		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000476684	ENST00000358743		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000476684	ENST00000347557		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-3CDS	ENST00000476684	ENST00000333137		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-intron	ENST00000476684	ENST00000404574		ChiTaRS3.1			AU099326	BICC1	chr10	60589093	+	SMTN	chr22	31477306	+
intron-intron	ENST00000378954	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000378954	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000406122	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000402054	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000539122	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000332337	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000419554	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000452935	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000546051	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000378954		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000406122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000402054		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000539122		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000332337		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000419554		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000452935		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000546051		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-intron	ENST00000486927	ENST00000486927		ChiTaRS3.1			AI500486	ATL2	chr2	38535653	+	ATL2	chr1	27259225	-
intron-3CDS	ENST00000585509	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000585509	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000585509	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000589297	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000589297	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000589297	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000591455	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000591455	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000591455	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000446868	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000446868	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000446868	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000361101	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000361101	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000361101	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000589296	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000589296	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000589296	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000586175	ENST00000334062		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3CDS	ENST00000586175	ENST00000389544		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-3UTR	ENST00000586175	ENST00000542651		ChiTaRS3.1			BF088116	CYTH1	chr17	76713890	+	RASA3	chr13	114783633	-
intron-intron	ENST00000354989	ENST00000397817		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000219431		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000475280		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000397817		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000219431		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000475280		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000397817		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000219431		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000475280		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000397817		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000219431		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000475280		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000397817		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000219431		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000475280		ChiTaRS3.1			EL584406	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
5UTR-3CDS	ENST00000470258	ENST00000352251		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
5UTR-3CDS	ENST00000470258	ENST00000350125		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
5UTR-intron	ENST00000470258	ENST00000484434		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
Frame-shit	ENST00000379600	ENST00000352251		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
Frame-shit	ENST00000379600	ENST00000350125		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
5CDS-intron	ENST00000379600	ENST00000484434		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
Frame-shit	ENST00000379599	ENST00000352251		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
Frame-shit	ENST00000379599	ENST00000350125		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
5CDS-intron	ENST00000379599	ENST00000484434		ChiTaRS3.1			BI031416	NHLRC3	chr13	39613849	+	PROSER1	chr13	39600525	-
intron-intron	ENST00000332624	ENST00000605105		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000332624	ENST00000605014		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000332624	ENST00000439539		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000332624	ENST00000603771		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000430254	ENST00000605105		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000430254	ENST00000605014		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000430254	ENST00000439539		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000430254	ENST00000603771		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000451703	ENST00000605105		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000451703	ENST00000605014		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000451703	ENST00000439539		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
intron-intron	ENST00000451703	ENST00000603771		ChiTaRS3.1			BF849706	TRAK2	chr2	202250978	+	GHRLOS	chr3	10333402	+
5CDS-intron	ENST00000377674	ENST00000343259		ChiTaRS3.1			BF915076	ZBTB48	chr1	6649165	+	ARHGEF39	chr9	35675565	-
5CDS-intron	ENST00000377674	ENST00000378387		ChiTaRS3.1			BF915076	ZBTB48	chr1	6649165	+	ARHGEF39	chr9	35675565	-
5CDS-intron	ENST00000377674	ENST00000378395		ChiTaRS3.1			BF915076	ZBTB48	chr1	6649165	+	ARHGEF39	chr9	35675565	-
5CDS-intron	ENST00000377674	ENST00000490970		ChiTaRS3.1			BF915076	ZBTB48	chr1	6649165	+	ARHGEF39	chr9	35675565	-
intron-3UTR	ENST00000378609	ENST00000240185		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-3UTR	ENST00000378609	ENST00000439080		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-intron	ENST00000378609	ENST00000315091		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-intron	ENST00000378609	ENST00000480464		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-3UTR	ENST00000472614	ENST00000240185		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-3UTR	ENST00000472614	ENST00000439080		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-intron	ENST00000472614	ENST00000315091		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-intron	ENST00000472614	ENST00000480464		ChiTaRS3.1			AA864236	GNB1	chr1	1716836	+	TARDBP	chr1	11082905	-
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
intron-intron	ENST00000548589	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000552699	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000267115	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000549385	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000423828	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000395006	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000552699		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000267115		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000549385		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000423828		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000395006		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
5CDS-intron	ENST00000547798	ENST00000547798		ChiTaRS3.1			BM984466	TMBIM6	chr12	50152507	-	TMBIM6	chr12	50152163	+
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			C06296	CALR	chr19	13050261	-	CALR	chr19	13050325	+
intron-3CDS	ENST00000399332	ENST00000526148		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000525681		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000339995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000399332	ENST00000396525		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000399332	ENST00000525995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000526148		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000525681		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000339995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000553700	ENST00000396525		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000553700	ENST00000525995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000526148		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000525681		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000339995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-3CDS	ENST00000556474	ENST00000396525		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000556474	ENST00000525995		ChiTaRS3.1			BE088866	HECTD1	chr14	31569989	+	EIF4G2	chr11	10820550	+
intron-intron	ENST00000333677	ENST00000474063		ChiTaRS3.1			T41216	ARHGEF37	chr5	148969771	+	DIRC3	chr2	218615010	+
intron-intron	ENST00000333677	ENST00000423123		ChiTaRS3.1			T41216	ARHGEF37	chr5	148969771	+	DIRC3	chr2	218615010	+
In-frame	ENST00000512994	ENST00000324932		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000512994	ENST00000359171		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000512994	ENST00000355260		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000512994	ENST00000397004		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000512994	ENST00000397007		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
5CDS-intron	ENST00000512994	ENST00000488828		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000505939	ENST00000324932		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000505939	ENST00000359171		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000505939	ENST00000355260		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000505939	ENST00000397004		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000505939	ENST00000397007		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
5CDS-intron	ENST00000505939	ENST00000488828		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000240499	ENST00000324932		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000240499	ENST00000359171		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000240499	ENST00000355260		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000240499	ENST00000397004		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
In-frame	ENST00000240499	ENST00000397007		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
5CDS-intron	ENST00000240499	ENST00000488828		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3CDS	ENST00000579770	ENST00000324932		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3CDS	ENST00000579770	ENST00000359171		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3CDS	ENST00000579770	ENST00000355260		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3CDS	ENST00000579770	ENST00000397004		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3CDS	ENST00000579770	ENST00000397007		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-intron	ENST00000579770	ENST00000488828		ChiTaRS3.1			DA817816	ZNF141	chr4	337645	+	NUP98	chr11	3756511	-
intron-3UTR	ENST00000361641	ENST00000541285		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3UTR	ENST00000361641	ENST00000399138		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3UTR	ENST00000533373	ENST00000541285		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3UTR	ENST00000533373	ENST00000399138		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3UTR	ENST00000423085	ENST00000541285		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3UTR	ENST00000423085	ENST00000399138		ChiTaRS3.1			BQ011056	TSEN15	chr1	184032832	+	ALKBH5	chr17	18112703	-
intron-3CDS	ENST00000398571	ENST00000433496		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
intron-3CDS	ENST00000398571	ENST00000392481		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
intron-3CDS	ENST00000398571	ENST00000296273		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
intron-3CDS	ENST00000472689	ENST00000433496		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
intron-3CDS	ENST00000472689	ENST00000392481		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
intron-3CDS	ENST00000472689	ENST00000296273		ChiTaRS3.1			CV347166	USP34	chr2	61667113	-	RFC4	chr3	186509629	-
3UTR-3UTR	ENST00000454876	ENST00000454876		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-3UTR	ENST00000454876	ENST00000360861		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-intron	ENST00000454876	ENST00000416216		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-intron	ENST00000454876	ENST00000484191		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-3UTR	ENST00000360861	ENST00000454876		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-3UTR	ENST00000360861	ENST00000360861		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-intron	ENST00000360861	ENST00000416216		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
3UTR-intron	ENST00000360861	ENST00000484191		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-3UTR	ENST00000416216	ENST00000454876		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-3UTR	ENST00000416216	ENST00000360861		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-intron	ENST00000416216	ENST00000416216		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-intron	ENST00000416216	ENST00000484191		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-3UTR	ENST00000484191	ENST00000454876		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-3UTR	ENST00000484191	ENST00000360861		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-intron	ENST00000484191	ENST00000416216		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
intron-intron	ENST00000484191	ENST00000484191		ChiTaRS3.1			W25826	SLC6A6	chr3	14529992	-	SLC6A6	chr3	14529798	+
In-frame	ENST00000591090	ENST00000591090		ChiTaRS3.1			CN270486	ASNA1	chr19	12858839	+	ASNA1	chr19	12858060	+
In-frame	ENST00000591090	ENST00000357332		ChiTaRS3.1			CN270486	ASNA1	chr19	12858839	+	ASNA1	chr19	12858060	+
In-frame	ENST00000357332	ENST00000591090		ChiTaRS3.1			CN270486	ASNA1	chr19	12858839	+	ASNA1	chr19	12858060	+
In-frame	ENST00000357332	ENST00000357332		ChiTaRS3.1			CN270486	ASNA1	chr19	12858839	+	ASNA1	chr19	12858060	+
intron-3UTR	ENST00000265909	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000265909	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000534726	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000534726	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000545537	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000545537	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000426933	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000426933	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000533318	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000533318	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000530356	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000530356	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000539184	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000539184	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000528555	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000528555	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000533214	ENST00000366684		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-3UTR	ENST00000533214	ENST00000366683		ChiTaRS3.1			BP316776	SNX19	chr11	130746875	-	ACTA1	chr1	229567050	-
intron-intron	ENST00000367355	ENST00000367355		ChiTaRS3.1			BE504066	LINC00862	chr1	200332270	+	LINC00862	chr1	200331533	+
intron-intron	ENST00000375643	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375643	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375629	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000443024	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000447699	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000375627	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000432059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000335472		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000264986		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000507030		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000394062		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000394059		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000511315		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000511374		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-intron	ENST00000474340	ENST00000502607		ChiTaRS3.1			W52666	IARS	chr9	95019084	+	SLC10A7	chr4	147187380	+
intron-3UTR	ENST00000522695	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000522695	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000524300	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000524300	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000523558	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000523558	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000521210	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000521210	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000355780	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000355780	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000519961	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000519961	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000521727	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000521727	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000521451	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000521451	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000522509	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000522509	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000517542	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000517542	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000524104	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000524104	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000522962	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000522962	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-3UTR	ENST00000521419	ENST00000397239		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000521419	ENST00000244776		ChiTaRS3.1			BF336846	STAU2	chr8	74650555	+	DEK	chr6	18224753	-
intron-intron	ENST00000379251	ENST00000379251		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-intron	ENST00000379251	ENST00000379253		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379251	ENST00000379254		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379251	ENST00000379270		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379251	ENST00000489394		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-intron	ENST00000379253	ENST00000379251		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-intron	ENST00000379253	ENST00000379253		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379253	ENST00000379254		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379253	ENST00000379270		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
intron-3UTR	ENST00000379253	ENST00000489394		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-intron	ENST00000379254	ENST00000379251		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-intron	ENST00000379254	ENST00000379253		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379254	ENST00000379254		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379254	ENST00000379270		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379254	ENST00000489394		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-intron	ENST00000379270	ENST00000379251		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-intron	ENST00000379270	ENST00000379253		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379270	ENST00000379254		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379270	ENST00000379270		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
5CDS-3UTR	ENST00000379270	ENST00000489394		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
3UTR-intron	ENST00000489394	ENST00000379251		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
3UTR-intron	ENST00000489394	ENST00000379253		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
3UTR-3UTR	ENST00000489394	ENST00000379254		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
3UTR-3UTR	ENST00000489394	ENST00000379270		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
3UTR-3UTR	ENST00000489394	ENST00000489394		ChiTaRS3.1			W39276	SAT1	chrX	23803945	-	SAT1	chrX	23804095	+
Frame-shit	ENST00000357685	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000393032	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000361053	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000438022	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000526088	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000532593	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
Frame-shit	ENST00000531169	ENST00000322861		ChiTaRS3.1			F00366	BCO2	chr11	112064380	+	MYLPF	chr16	30389178	-
intron-3CDS	ENST00000251195	ENST00000504734		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000251195	ENST00000415618		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000251195	ENST00000452673		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000251195	ENST00000247461		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000251195	ENST00000512607		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-intron	ENST00000251195	ENST00000503126		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000466308	ENST00000504734		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000466308	ENST00000415618		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000466308	ENST00000452673		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000466308	ENST00000247461		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000466308	ENST00000512607		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-intron	ENST00000466308	ENST00000503126		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000373220	ENST00000504734		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000373220	ENST00000415618		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000373220	ENST00000452673		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000373220	ENST00000247461		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000373220	ENST00000512607		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-intron	ENST00000373220	ENST00000503126		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000520551	ENST00000504734		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000520551	ENST00000415618		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000520551	ENST00000452673		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000520551	ENST00000247461		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000520551	ENST00000512607		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-intron	ENST00000520551	ENST00000503126		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000318121	ENST00000504734		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000318121	ENST00000415618		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000318121	ENST00000452673		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000318121	ENST00000247461		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-3CDS	ENST00000318121	ENST00000512607		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
intron-intron	ENST00000318121	ENST00000503126		ChiTaRS3.1			BI019346	CLSPN	chr1	36230155	-	CANX	chr5	179136910	-
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000354520	ENST00000395146		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000354520	ENST00000307808		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AF177236	KMT2A	chr11	118353211	+	AFF1	chr4	88011134	+
In-frame	ENST00000375571	ENST00000534358		ChiTaRS3.1			AY752859	MAPRE1	chr20	31427663	+	KMT2A	chr11	118354896	+
In-frame	ENST00000375571	ENST00000389506		ChiTaRS3.1			AY752859	MAPRE1	chr20	31427663	+	KMT2A	chr11	118354896	+
In-frame	ENST00000375571	ENST00000354520		ChiTaRS3.1			AY752859	MAPRE1	chr20	31427663	+	KMT2A	chr11	118354896	+
5CDS-3UTR	ENST00000375571	ENST00000420751		ChiTaRS3.1			AY752859	MAPRE1	chr20	31427663	+	KMT2A	chr11	118354896	+
intron-intron	ENST00000311573	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000311573	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000311573	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368340	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368340	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368340	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000347088	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000347088	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000347088	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000361831	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000361831	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000361831	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000355499	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000355499	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000355499	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000404643	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000404643	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000404643	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000407221	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000407221	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000407221	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000359205	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000359205	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000359205	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000295566	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000295566	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000295566	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368330	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368330	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368330	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368339	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368339	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000368339	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000535662	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000535662	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000535662	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000405763	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000405763	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000405763	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000438245	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000438245	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000438245	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000476093	ENST00000396352		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000476093	ENST00000317201		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000476093	ENST00000521401		ChiTaRS3.1			BG954176	YY1AP1	chr1	155736144	-	HOXA3	chr7	27162309	-
intron-intron	ENST00000261880	ENST00000261880		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000261880	ENST00000538028		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000261880	ENST00000561452		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000261880	ENST00000542650		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000538028	ENST00000261880		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000538028	ENST00000538028		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000538028	ENST00000561452		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000538028	ENST00000542650		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000561452	ENST00000261880		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000561452	ENST00000538028		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000561452	ENST00000561452		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000561452	ENST00000542650		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000542650	ENST00000261880		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000542650	ENST00000538028		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000542650	ENST00000561452		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000542650	ENST00000542650		ChiTaRS3.1			BE676486	AAGAB	chr15	67514912	-	AAGAB	chr15	67516947	-
intron-intron	ENST00000358368	ENST00000393772		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000379308		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000379306		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000379305		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000436908		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000313221		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000456695		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000455112		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000358368	ENST00000471074		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000393772		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000379308		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000379306		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000379305		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000436908		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000313221		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000456695		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000455112		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000534844	ENST00000471074		ChiTaRS3.1			BQ355746	XAB2	chr19	7692207	-	FBXL13	chr7	102560612	-
intron-intron	ENST00000242719	ENST00000394196		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000242719	ENST00000557381		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000242719	ENST00000420239		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000242719	ENST00000536619		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000242719	ENST00000554122		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000494873	ENST00000394196		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000494873	ENST00000557381		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000494873	ENST00000420239		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000494873	ENST00000536619		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-intron	ENST00000494873	ENST00000554122		ChiTaRS3.1			BQ339506	RNF11	chr1	51704434	-	CHD2	chr15	93543460	+
intron-3UTR	ENST00000377200	ENST00000377200		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000377200	ENST00000340434		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000377200	ENST00000472967		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-3UTR	ENST00000340434	ENST00000377200		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000340434	ENST00000340434		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000340434	ENST00000472967		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-3UTR	ENST00000472967	ENST00000377200		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000472967	ENST00000340434		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
intron-intron	ENST00000472967	ENST00000472967		ChiTaRS3.1			BG289106	PTAR1	chr9	72325442	+	PTAR1	chr9	72324667	-
3UTR-3UTR	ENST00000457880	ENST00000457880		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-3UTR	ENST00000457880	ENST00000370867		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000457880	ENST00000421739		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000457880	ENST00000479111		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000457880	ENST00000467646		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-3UTR	ENST00000370867	ENST00000457880		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-3UTR	ENST00000370867	ENST00000370867		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000370867	ENST00000421739		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000370867	ENST00000479111		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
3UTR-intron	ENST00000370867	ENST00000467646		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000421739	ENST00000457880		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000421739	ENST00000370867		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000421739	ENST00000421739		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000421739	ENST00000479111		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000421739	ENST00000467646		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000479111	ENST00000457880		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000479111	ENST00000370867		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000479111	ENST00000421739		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000479111	ENST00000479111		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000479111	ENST00000467646		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000467646	ENST00000457880		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-3UTR	ENST00000467646	ENST00000370867		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000467646	ENST00000421739		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000467646	ENST00000479111		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
intron-intron	ENST00000467646	ENST00000467646		ChiTaRS3.1			AW502886	TYW3	chr1	75231215	-	TYW3	chr1	75230424	+
5CDS-3UTR	ENST00000374303	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374303	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374303	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374303	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374303	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374303	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374303	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374303	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374303	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000474295	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000474295	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000474295	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000474295	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-intron	ENST00000469815	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-intron	ENST00000469815	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-intron	ENST00000469815	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
3UTR-3UTR	ENST00000469815	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000526894	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000526894	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000526894	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000526894	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000524618	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000524618	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000524618	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000524618	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374307	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374307	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374307	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374307	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374301	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374301	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374301	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374301	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374300	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374300	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000374300	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000374300	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000374303		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000474295		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000466284	ENST00000469815		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000466284	ENST00000526894		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-intron	ENST00000466284	ENST00000524618		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000374307		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000374301		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000374300		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
5CDS-3UTR	ENST00000466284	ENST00000466284		ChiTaRS3.1			BF336776	MTFR1L	chr1	26156224	-	MTFR1L	chr1	26159163	+
intron-intron	ENST00000293303	ENST00000513454		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000293303	ENST00000311337		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000293303	ENST00000458112		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000293303	ENST00000500692		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000293303	ENST00000508177		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000293303	ENST00000503794		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-intron	ENST00000293303	ENST00000542860		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-intron	ENST00000485613	ENST00000513454		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000485613	ENST00000311337		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000485613	ENST00000458112		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000485613	ENST00000500692		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000485613	ENST00000508177		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-3UTR	ENST00000485613	ENST00000503794		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-intron	ENST00000485613	ENST00000542860		ChiTaRS3.1			BE162856	KLHL10	chr17	40001339	+	GNPDA1	chr5	141380648	+
intron-intron	ENST00000262430	ENST00000262430		ChiTaRS3.1			BF805316	MLYCD	chr16	83935396	-	MLYCD	chr16	83935205	+
In-frame	ENST00000283357	ENST00000283357		ChiTaRS3.1			CA311866	FAM81B	chr5	94785950	-	FAM81B	chr5	94782373	+
5CDS-intron	ENST00000283357	ENST00000506418		ChiTaRS3.1			CA311866	FAM81B	chr5	94785950	-	FAM81B	chr5	94782373	+
intron-3CDS	ENST00000506418	ENST00000283357		ChiTaRS3.1			CA311866	FAM81B	chr5	94785950	-	FAM81B	chr5	94782373	+
intron-intron	ENST00000506418	ENST00000506418		ChiTaRS3.1			CA311866	FAM81B	chr5	94785950	-	FAM81B	chr5	94782373	+
intron-3CDS	ENST00000549231	ENST00000314888		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
intron-3CDS	ENST00000549231	ENST00000540444		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
intron-intron	ENST00000549231	ENST00000464379		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
In-frame	ENST00000355673	ENST00000314888		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
In-frame	ENST00000355673	ENST00000540444		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
5CDS-intron	ENST00000355673	ENST00000464379		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
In-frame	ENST00000431731	ENST00000314888		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
In-frame	ENST00000431731	ENST00000540444		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
5CDS-intron	ENST00000431731	ENST00000464379		ChiTaRS3.1			BG983096	MBD6	chr12	57922750	-	TLN1	chr9	35698651	+
3UTR-3CDS	ENST00000380629	ENST00000368653		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
3UTR-3CDS	ENST00000380629	ENST00000368654		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
3UTR-intron	ENST00000380629	ENST00000484853		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000523515	ENST00000368653		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000523515	ENST00000368654		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-intron	ENST00000523515	ENST00000484853		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000520409	ENST00000368653		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000520409	ENST00000368654		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-intron	ENST00000520409	ENST00000484853		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
3UTR-3CDS	ENST00000518611	ENST00000368653		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
3UTR-3CDS	ENST00000518611	ENST00000368654		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
3UTR-intron	ENST00000518611	ENST00000484853		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000521254	ENST00000368653		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3CDS	ENST00000521254	ENST00000368654		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-intron	ENST00000521254	ENST00000484853		ChiTaRS3.1			AA002186	BNIP3L	chr8	26268254	-	MKI67	chr10	129903843	+
intron-3UTR	ENST00000337318	ENST00000337318		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000337318	ENST00000392754		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000337318	ENST00000280780		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-3UTR	ENST00000392754	ENST00000337318		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000392754	ENST00000392754		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000392754	ENST00000280780		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-3UTR	ENST00000280780	ENST00000337318		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000280780	ENST00000392754		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-intron	ENST00000280780	ENST00000280780		ChiTaRS3.1			AA292476	FAM53B	chr10	126308133	+	FAM53B	chr10	126308312	-
intron-3CDS	ENST00000336798	ENST00000336798		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-3CDS	ENST00000336798	ENST00000339394		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-intron	ENST00000336798	ENST00000471567		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-3CDS	ENST00000339394	ENST00000336798		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-3CDS	ENST00000339394	ENST00000339394		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-intron	ENST00000339394	ENST00000471567		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-3CDS	ENST00000471567	ENST00000336798		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-3CDS	ENST00000471567	ENST00000339394		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
intron-intron	ENST00000471567	ENST00000471567		ChiTaRS3.1			BM991776	SDC3	chr1	31342662	+	SDC3	chr1	31346079	-
3UTR-intron	ENST00000407597	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000407597	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000407597	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000407597	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000424279	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000424279	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000424279	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000424279	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000536365	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000536365	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000536365	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000536365	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000380961	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000380961	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000380961	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000380961	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000217964	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000217964	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000217964	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
3UTR-intron	ENST00000217964	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000497555	ENST00000261681		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000497555	ENST00000555925		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000497555	ENST00000554911		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-intron	ENST00000497555	ENST00000556345		ChiTaRS3.1			M86146	TBL1X	chrX	9685853	-	MPP5	chr14	67751528	+
intron-3CDS	ENST00000542955	ENST00000358252		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
intron-3CDS	ENST00000542955	ENST00000532437		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
intron-intron	ENST00000542955	ENST00000530920		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
3UTR-3CDS	ENST00000269593	ENST00000358252		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
3UTR-3CDS	ENST00000269593	ENST00000532437		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
3UTR-intron	ENST00000269593	ENST00000530920		ChiTaRS3.1			BF756786	IGFBP4	chr17	38613640	-	TNKS1BP1	chr11	57076360	+
intron-intron	ENST00000390237	ENST00000316020		ChiTaRS3.1			AW378556	IGKC	chr2	89156952	-	OFCC1	chr6	9973953	-
intron-intron	ENST00000390237	ENST00000472329		ChiTaRS3.1			AW378556	IGKC	chr2	89156952	-	OFCC1	chr6	9973953	-
5CDS-3UTR	ENST00000310144	ENST00000538309		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000310144	ENST00000538839		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000310144	ENST00000290597		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000310144	ENST00000375341		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000310144	ENST00000454547		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-3UTR	ENST00000582420	ENST00000538309		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-3UTR	ENST00000582420	ENST00000538839		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-intron	ENST00000582420	ENST00000290597		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-3UTR	ENST00000582420	ENST00000375341		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-intron	ENST00000582420	ENST00000454547		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000580864	ENST00000538309		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000580864	ENST00000538839		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000580864	ENST00000290597		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000580864	ENST00000375341		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000580864	ENST00000454547		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000375812	ENST00000538309		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000375812	ENST00000538839		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000375812	ENST00000290597		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000375812	ENST00000375341		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000375812	ENST00000454547		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000581882	ENST00000538309		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000581882	ENST00000538839		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000581882	ENST00000290597		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-3UTR	ENST00000581882	ENST00000375341		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
5CDS-intron	ENST00000581882	ENST00000454547		ChiTaRS3.1			DB320226	PSMC5	chr17	61909094	-	ALDH4A1	chr1	19198500	+
intron-3CDS	ENST00000372072	ENST00000353801		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372072	ENST00000371646		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372072	ENST00000371554		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372073	ENST00000353801		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372073	ENST00000371646		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372073	ENST00000371554		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372068	ENST00000353801		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372068	ENST00000371646		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000372068	ENST00000371554		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000288381	ENST00000353801		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000288381	ENST00000371646		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000288381	ENST00000371554		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000464177	ENST00000353801		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000464177	ENST00000371646		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-3CDS	ENST00000464177	ENST00000371554		ChiTaRS3.1			BF084206	TMEM164	chrX	109261438	-	HSP90AB1	chr6	44218073	-
intron-intron	ENST00000481195	ENST00000409003		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-intron	ENST00000481195	ENST00000314727		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-intron	ENST00000481195	ENST00000527515		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-intron	ENST00000231504	ENST00000409003		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-intron	ENST00000231504	ENST00000314727		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-intron	ENST00000231504	ENST00000527515		ChiTaRS3.1			DB352016	PPP2CA	chr5	133533005	+	SAMD12	chr8	119271563	+
intron-3UTR	ENST00000375110	ENST00000374580		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000375110	ENST00000374574		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-intron	ENST00000375110	ENST00000479069		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000319778	ENST00000374580		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000319778	ENST00000374574		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-intron	ENST00000319778	ENST00000479069		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000263062	ENST00000374580		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000263062	ENST00000374574		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-intron	ENST00000263062	ENST00000479069		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000480402	ENST00000374580		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-3UTR	ENST00000480402	ENST00000374574		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
intron-intron	ENST00000480402	ENST00000479069		ChiTaRS3.1			CB052856	EPC1	chr10	32598519	+	BMPR2	chr2	203427718	-
In-frame	ENST00000304636	ENST00000360184		ChiTaRS3.1			BE838936	COL3A1	chr2	189875519	+	DYNC1H1	chr14	102483567	-
5CDS-intron	ENST00000304636	ENST00000556791		ChiTaRS3.1			BE838936	COL3A1	chr2	189875519	+	DYNC1H1	chr14	102483567	-
In-frame	ENST00000317840	ENST00000360184		ChiTaRS3.1			BE838936	COL3A1	chr2	189875519	+	DYNC1H1	chr14	102483567	-
5CDS-intron	ENST00000317840	ENST00000556791		ChiTaRS3.1			BE838936	COL3A1	chr2	189875519	+	DYNC1H1	chr14	102483567	-
intron-3UTR	ENST00000367142	ENST00000367142		ChiTaRS3.1			AA713656	NUCKS1	chr1	205686751	+	NUCKS1	chr1	205685390	+
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			AA713656	NUCKS1	chr1	205686751	+	NUCKS1	chr1	205685390	+
intron-3UTR	ENST00000464938	ENST00000367142		ChiTaRS3.1			AA713656	NUCKS1	chr1	205686751	+	NUCKS1	chr1	205685390	+
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			AA713656	NUCKS1	chr1	205686751	+	NUCKS1	chr1	205685390	+
3UTR-intron	ENST00000526767	ENST00000491071		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000348717		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000518273		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000522291		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000517960		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000521978		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000520567		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000264839		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000401910		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000523963		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000425662		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000517827		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000538414		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000431478		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000526767	ENST00000414192		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000491071		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000348717		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000518273		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000522291		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000517960		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000521978		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000520567		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000264839		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000401910		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000523963		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000425662		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000517827		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000538414		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000431478		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-intron	ENST00000530128	ENST00000414192		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000491071		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000348717		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000518273		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000522291		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000517960		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000521978		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000520567		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000264839		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000401910		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000523963		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000425662		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000517827		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000538414		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000431478		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
3UTR-intron	ENST00000381057	ENST00000414192		ChiTaRS3.1			BP334116	HTN3	chr4	70902151	+	RIMS1	chr6	73101663	+
intron-3CDS	ENST00000348547	ENST00000348547		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000357394		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000279052		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000348547	ENST00000447986		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000348547	ENST00000482338		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000348547		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000357394		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000279052		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000357394	ENST00000447986		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000357394	ENST00000482338		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000348547		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000357394		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000279052		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000279052	ENST00000447986		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000279052	ENST00000482338		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000348547		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000357394		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000279052		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000447986	ENST00000447986		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000447986	ENST00000482338		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000348547		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000357394		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000279052		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-3CDS	ENST00000482338	ENST00000447986		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
intron-intron	ENST00000482338	ENST00000482338		ChiTaRS3.1			BI039286	ERGIC3	chr20	34130071	-	ERGIC3	chr20	34144774	-
3UTR-intron	ENST00000400274	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000400274	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000427143	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000427143	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000318711	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000318711	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000417564	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000417564	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000457905	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000457905	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000466639	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000466639	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000435722	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-intron	ENST00000435722	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000479654	ENST00000314073		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
3UTR-intron	ENST00000479654	ENST00000394168		ChiTaRS3.1			D80006	DIP2A	chr21	47988221	+	GLTSCR1L	chr6	42827355	+
intron-3CDS	ENST00000585916	ENST00000585916		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000585916	ENST00000545673		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000585916	ENST00000324794		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-intron	ENST00000585916	ENST00000590944		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000545673	ENST00000585916		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000545673	ENST00000545673		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000545673	ENST00000324794		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-intron	ENST00000545673	ENST00000590944		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000324794	ENST00000585916		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000324794	ENST00000545673		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000324794	ENST00000324794		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-intron	ENST00000324794	ENST00000590944		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000590944	ENST00000585916		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000590944	ENST00000545673		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-3CDS	ENST00000590944	ENST00000324794		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-intron	ENST00000590944	ENST00000590944		ChiTaRS3.1			AA244416	PIAS2	chr18	44400857	-	PIAS2	chr18	44400956	+
intron-intron	ENST00000221169	ENST00000415676		ChiTaRS3.1			EB387086	NEFL	chr8	24811159	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000221169	ENST00000288197		ChiTaRS3.1			EB387086	NEFL	chr8	24811159	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000221169	ENST00000474759		ChiTaRS3.1			EB387086	NEFL	chr8	24811159	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000221169	ENST00000490478		ChiTaRS3.1			EB387086	NEFL	chr8	24811159	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000221169	ENST00000478261		ChiTaRS3.1			EB387086	NEFL	chr8	24811159	-	CACNA2D3	chr3	54660646	+
intron-3UTR	ENST00000257897	ENST00000264563		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-3UTR	ENST00000257897	ENST00000590625		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-3UTR	ENST00000257897	ENST00000585513		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-3UTR	ENST00000547588	ENST00000264563		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-3UTR	ENST00000547588	ENST00000590625		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-3UTR	ENST00000547588	ENST00000585513		ChiTaRS3.1			BM893846	AGAP2	chr12	58122051	-	IL11	chr19	55877003	+
intron-intron	ENST00000403681	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000403681	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000403681	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000403681	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000403681	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000403681	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000541363	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393577	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000393578	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000425208	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000536545	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000487861		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000471583		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000487270		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000488612		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000390683		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000354636	ENST00000469165		ChiTaRS3.1			AY387666	HMGA2	chr12	66260583	-	RAD51B	chr14	68949447	-
intron-intron	ENST00000495072	ENST00000584900		ChiTaRS3.1			AA321826	IPP	chr1	46183479	-	DTX2P1-UPK3BP1-PMS2P11	chr7	76661278	-
intron-intron	ENST00000396478	ENST00000584900		ChiTaRS3.1			AA321826	IPP	chr1	46183479	-	DTX2P1-UPK3BP1-PMS2P11	chr7	76661278	-
intron-3UTR	ENST00000458659	ENST00000458659		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000458659	ENST00000501704		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000458659	ENST00000261489		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-intron	ENST00000458659	ENST00000460842		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000501704	ENST00000458659		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000501704	ENST00000501704		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000501704	ENST00000261489		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-intron	ENST00000501704	ENST00000460842		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000261489	ENST00000458659		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000261489	ENST00000501704		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000261489	ENST00000261489		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-intron	ENST00000261489	ENST00000460842		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000460842	ENST00000458659		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000460842	ENST00000501704		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-3UTR	ENST00000460842	ENST00000261489		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-intron	ENST00000460842	ENST00000460842		ChiTaRS3.1			AA593046	TSC22D1	chr13	45007963	+	TSC22D1	chr13	45008015	-
intron-intron	ENST00000532324	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000532324	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366974	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000530441	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526641	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000531963	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
3UTR-intron	ENST00000366973	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000526997	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000293618		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000429001		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000398473		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000518444		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000347328		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000522085		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000525569	ENST00000518561		ChiTaRS3.1			AA946586	TATDN3	chr1	212989144	-	LARP4	chr12	50833935	-
intron-intron	ENST00000308158	ENST00000382582		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000355994		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397875		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397866		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397865		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000527041		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000359645		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000528160		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397869		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000354542		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000526111		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000580402		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000579129		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000578193		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397863		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000397860		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000308158	ENST00000487778		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000382582		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000355994		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397875		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397866		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397865		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000527041		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000359645		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000528160		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397869		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000354542		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000526111		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000580402		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000579129		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000578193		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397863		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000397860		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000481811	ENST00000487778		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000382582		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000355994		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397875		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397866		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397865		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000527041		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000359645		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000528160		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397869		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000354542		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000526111		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000580402		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000579129		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000578193		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397863		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000397860		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
intron-intron	ENST00000476170	ENST00000487778		ChiTaRS3.1			BI027996	PHYKPL	chr5	177638575	-	MBP	chr18	74692526	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BU674886	MALAT1	chr11	65267054	-	MALAT1	chr11	65266874	+
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850196	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850196	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850196	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850196	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
Frame-shit	ENST00000579662	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000579662	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000579662	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000579662	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000579662	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
Frame-shit	ENST00000339591	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000339591	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000339591	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000339591	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000339591	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
Frame-shit	ENST00000200181	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000200181	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000200181	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000200181	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000200181	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
Frame-shit	ENST00000450894	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000450894	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000450894	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000450894	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000450894	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
Frame-shit	ENST00000449880	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000449880	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000449880	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000449880	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5CDS-intron	ENST00000449880	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
intron-3CDS	ENST00000584558	ENST00000342435		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
intron-intron	ENST00000584558	ENST00000448205		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
intron-intron	ENST00000584558	ENST00000487389		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
intron-intron	ENST00000584558	ENST00000448787		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
intron-intron	ENST00000584558	ENST00000484560		ChiTaRS3.1			AW369496	ITGB4	chr17	73748632	+	PLSCR1	chr3	146239375	+
5UTR-3CDS	ENST00000359139	ENST00000360957		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000359139	ENST00000418234		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395741	ENST00000360957		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395741	ENST00000418234		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395744	ENST00000360957		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000395744	ENST00000418234		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000216061	ENST00000360957		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
5UTR-3CDS	ENST00000216061	ENST00000418234		ChiTaRS3.1			BM847416	PPP6R2	chr22	50810580	+	PPP1R13L	chr19	45889440	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766256	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766256	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-5UTR	ENST00000509018	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000509018	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000509018	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000509018	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000509018	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000509018	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000307984	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000307984	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000307984	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000307984	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000307984	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000307984	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000507093	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000507093	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000507093	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000507093	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000507093	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000507093	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000296859	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000296859	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000296859	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000296859	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000296859	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000296859	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000512052	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000512052	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000512052	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000512052	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000512052	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000512052	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000308008	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000308008	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000308008	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000308008	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000308008	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000308008	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000510071	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000510071	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000510071	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000510071	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000510071	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000510071	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000503398	ENST00000395326		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000503398	ENST00000431089		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000503398	ENST00000398684		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-5UTR	ENST00000503398	ENST00000338592		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000503398	ENST00000415001		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
intron-intron	ENST00000503398	ENST00000492264		ChiTaRS3.1			BE261476	RAPGEF6	chr5	130994821	+	CRCP	chr7	65579863	+
3UTR-intron	ENST00000373509	ENST00000369983		ChiTaRS3.1			AI536746	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
3UTR-intron	ENST00000373509	ENST00000476019		ChiTaRS3.1			AI536746	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-intron	ENST00000468243	ENST00000369983		ChiTaRS3.1			AI536746	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-intron	ENST00000468243	ENST00000476019		ChiTaRS3.1			AI536746	PIM1	chr6	37143123	-	GBF1	chr10	104116680	-
intron-3UTR	ENST00000264255	ENST00000228506		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000264255	ENST00000412616		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000264255	ENST00000535413		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-3UTR	ENST00000409434	ENST00000228506		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000409434	ENST00000412616		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000409434	ENST00000535413		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-3UTR	ENST00000434323	ENST00000228506		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000434323	ENST00000412616		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000434323	ENST00000535413		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-3UTR	ENST00000477337	ENST00000228506		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000477337	ENST00000412616		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000477337	ENST00000535413		ChiTaRS3.1			AI651406	TXNDC9	chr2	99953945	-	MLEC	chr12	121137195	-
intron-intron	ENST00000274811	ENST00000408388		ChiTaRS3.1			BI029096	RNF44	chr5	175958652	+	PVT1	chr8	128866232	-
intron-intron	ENST00000537487	ENST00000408388		ChiTaRS3.1			BI029096	RNF44	chr5	175958652	+	PVT1	chr8	128866232	-
intron-intron	ENST00000509404	ENST00000408388		ChiTaRS3.1			BI029096	RNF44	chr5	175958652	+	PVT1	chr8	128866232	-
Frame-shit	ENST00000371486	ENST00000371486		ChiTaRS3.1			AA531596	CPT2	chr1	53679197	-	CPT2	chr1	53679197	+
5CDS-intron	ENST00000371486	ENST00000468572		ChiTaRS3.1			AA531596	CPT2	chr1	53679197	-	CPT2	chr1	53679197	+
intron-3CDS	ENST00000468572	ENST00000371486		ChiTaRS3.1			AA531596	CPT2	chr1	53679197	-	CPT2	chr1	53679197	+
intron-intron	ENST00000468572	ENST00000468572		ChiTaRS3.1			AA531596	CPT2	chr1	53679197	-	CPT2	chr1	53679197	+
intron-intron	ENST00000472413	ENST00000452510		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000472413	ENST00000354283		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000472413	ENST00000509178		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000328085	ENST00000452510		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000328085	ENST00000354283		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000328085	ENST00000509178		ChiTaRS3.1			AB075516	NPIPA1	chr16	15044557	+	DDX46	chr5	134104188	+
intron-intron	ENST00000481781	ENST00000260402		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000481781	ENST00000557821		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000481781	ENST00000456256		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-3UTR	ENST00000481781	ENST00000543785		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000260402		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000557821		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-intron	ENST00000397270	ENST00000456256		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-3UTR	ENST00000397270	ENST00000543785		ChiTaRS3.1			N69126	INS-IGF2	chr11	2150546	+	PLCB2	chr15	40593197	+
intron-3CDS	ENST00000382582	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000382582	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000355994	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000355994	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397875	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397875	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397866	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397866	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397865	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397865	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000527041	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000527041	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000359645	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000359645	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000528160	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000528160	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397869	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397869	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000354542	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000354542	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000526111	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000526111	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000580402	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000580402	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000579129	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000579129	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000578193	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000578193	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397863	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397863	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000397860	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000397860	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-3CDS	ENST00000487778	ENST00000378609		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
intron-intron	ENST00000487778	ENST00000472614		ChiTaRS3.1			BG315176	MBP	chr18	74725205	+	GNB1	chr1	1718782	-
3UTR-3CDS	ENST00000356805	ENST00000356805		ChiTaRS3.1			AA262426	SPTBN1	chr2	54895770	+	SPTBN1	chr2	54876924	+
3UTR-3CDS	ENST00000356805	ENST00000333896		ChiTaRS3.1			AA262426	SPTBN1	chr2	54895770	+	SPTBN1	chr2	54876924	+
intron-3CDS	ENST00000333896	ENST00000356805		ChiTaRS3.1			AA262426	SPTBN1	chr2	54895770	+	SPTBN1	chr2	54876924	+
intron-3CDS	ENST00000333896	ENST00000333896		ChiTaRS3.1			AA262426	SPTBN1	chr2	54895770	+	SPTBN1	chr2	54876924	+
intron-3UTR	ENST00000379589	ENST00000334530		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-3UTR	ENST00000379589	ENST00000306306		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-3UTR	ENST00000379589	ENST00000523293		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-3UTR	ENST00000495922	ENST00000334530		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-3UTR	ENST00000495922	ENST00000306306		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-3UTR	ENST00000495922	ENST00000523293		ChiTaRS3.1			BE122646	LHFP	chr13	39917631	-	REEP4	chr8	21995798	-
intron-intron	ENST00000273038	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000273038	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000430365	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000404339	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000480288	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000413604	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000451674	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000273038		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000430365		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000404339		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000480288		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000413604		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000451674		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000424529	ENST00000424529		ChiTaRS3.1			BF854976	VGLL4	chr3	11640144	-	VGLL4	chr3	11640546	+
intron-intron	ENST00000341861	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000341861	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000358939	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000300141	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321147	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000321118	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000339244	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000559233	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000341861		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000358939		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000300141		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000321147		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000321118		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000339244		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000559233		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
intron-intron	ENST00000560048	ENST00000560048		ChiTaRS3.1			CD367446	DPP8	chr15	65747162	+	DPP8	chr15	65746208	+
In-frame	ENST00000360876	ENST00000360876		ChiTaRS3.1			BG253176	EIF3B	chr7	2418349	-	EIF3B	chr7	2418354	+
In-frame	ENST00000360876	ENST00000397011		ChiTaRS3.1			BG253176	EIF3B	chr7	2418349	-	EIF3B	chr7	2418354	+
In-frame	ENST00000397011	ENST00000360876		ChiTaRS3.1			BG253176	EIF3B	chr7	2418349	-	EIF3B	chr7	2418354	+
In-frame	ENST00000397011	ENST00000397011		ChiTaRS3.1			BG253176	EIF3B	chr7	2418349	-	EIF3B	chr7	2418354	+
intron-3CDS	ENST00000472863	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000472863	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000472863	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000498678	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000498678	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000498678	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000460160	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000460160	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000460160	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
Frame-shit	ENST00000476342	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
Frame-shit	ENST00000476342	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
5CDS-intron	ENST00000476342	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000552000	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000552000	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000552000	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000470495	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000470495	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000470495	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000311626	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000311626	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000311626	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000490677	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000490677	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000490677	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000485909	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000485909	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000485909	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000489475	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000489475	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000489475	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000465120	ENST00000522684		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3CDS	ENST00000465120	ENST00000535192		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000519465		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000517887		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000521059		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000395218		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000538769		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000340930		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000519419		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000430260		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000519881		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000520892		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000519635		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000517712		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000522950		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-intron	ENST00000465120	ENST00000520151		ChiTaRS3.1			CN373156	HOXB3	chr17	46627701	+	PTK2	chr8	141874500	-
intron-3UTR	ENST00000292211	ENST00000292211		ChiTaRS3.1			AV753456	UBE2Q1	chr1	154523885	+	UBE2Q1	chr1	154522879	-
intron-intron	ENST00000292211	ENST00000497453		ChiTaRS3.1			AV753456	UBE2Q1	chr1	154523885	+	UBE2Q1	chr1	154522879	-
intron-3UTR	ENST00000497453	ENST00000292211		ChiTaRS3.1			AV753456	UBE2Q1	chr1	154523885	+	UBE2Q1	chr1	154522879	-
intron-intron	ENST00000497453	ENST00000497453		ChiTaRS3.1			AV753456	UBE2Q1	chr1	154523885	+	UBE2Q1	chr1	154522879	-
intron-3CDS	ENST00000395555	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000395555	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000494157	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000494157	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000225740	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000225740	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000444455	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000444455	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000457500	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000457500	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000485231	ENST00000541428		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000485231	ENST00000379454		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000523897		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522919		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000356457		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000518068		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517903		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000445642		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517847		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522835		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517856		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000389204		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522603		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000379449		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517661		ChiTaRS3.1			BU679486	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3UTR	ENST00000298355	ENST00000317089		ChiTaRS3.1			BQ340966	TRIM9	chr14	51443336	+	DNAJA2	chr16	46990804	+
intron-3UTR	ENST00000338969	ENST00000317089		ChiTaRS3.1			BQ340966	TRIM9	chr14	51443336	+	DNAJA2	chr16	46990804	+
intron-3UTR	ENST00000360392	ENST00000317089		ChiTaRS3.1			BQ340966	TRIM9	chr14	51443336	+	DNAJA2	chr16	46990804	+
intron-3UTR	ENST00000557456	ENST00000317089		ChiTaRS3.1			BQ340966	TRIM9	chr14	51443336	+	DNAJA2	chr16	46990804	+
intron-5UTR	ENST00000478423	ENST00000478423		ChiTaRS3.1			BF915896	NPHP4	chr1	6046302	+	NPHP4	chr1	5987720	+
intron-5UTR	ENST00000478423	ENST00000378156		ChiTaRS3.1			BF915896	NPHP4	chr1	6046302	+	NPHP4	chr1	5987720	+
intron-5UTR	ENST00000378156	ENST00000478423		ChiTaRS3.1			BF915896	NPHP4	chr1	6046302	+	NPHP4	chr1	5987720	+
intron-5UTR	ENST00000378156	ENST00000378156		ChiTaRS3.1			BF915896	NPHP4	chr1	6046302	+	NPHP4	chr1	5987720	+
intron-3CDS	ENST00000434640	ENST00000434640		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380368		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380375		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380379		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000434640	ENST00000464040		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000434640		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380368		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380375		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380379		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380368	ENST00000464040		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000434640		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380368		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380375		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380379		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380375	ENST00000464040		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000434640		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380368		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380375		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380379		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380379	ENST00000464040		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000434640		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380368		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380375		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380379		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000464040	ENST00000464040		ChiTaRS3.1			BF448366	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000265734	ENST00000265631		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000265734	ENST00000416240		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000265734	ENST00000542654		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000265734	ENST00000494085		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000424848	ENST00000265631		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000424848	ENST00000416240		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000424848	ENST00000542654		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000424848	ENST00000494085		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000491250	ENST00000265631		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000491250	ENST00000416240		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000491250	ENST00000542654		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-intron	ENST00000491250	ENST00000494085		ChiTaRS3.1			BI480726	CDK6	chr7	92352483	-	SLC25A13	chr7	95767055	-
intron-3UTR	ENST00000446906	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000446906	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000446906	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000446906	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000377072	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377072	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377072	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377072	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000307729	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000307729	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000307729	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000307729	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000377059	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377059	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377059	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377059	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000495130	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000495130	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000495130	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000495130	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000377100	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377100	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377100	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377100	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-3UTR	ENST00000377091	ENST00000361781		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377091	ENST00000429490		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377091	ENST00000492601		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000377091	ENST00000361543		ChiTaRS3.1			BF845226	MLLT10	chr10	22023141	-	SGMS1	chr10	52066624	+
intron-intron	ENST00000254508	ENST00000296812		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000281623		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000509134		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000296812		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000281623		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000509134		ChiTaRS3.1			BE073326	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000381525	ENST00000360004		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000399450		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000444645		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000460546		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000328980		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000437784		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000419393		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000381525	ENST00000553034		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000360004		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000399450		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000444645		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000460546		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000328980		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000437784		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000419393		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000362009	ENST00000553034		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000360004		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000399450		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000444645		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000460546		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000328980		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000437784		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000419393		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000307236	ENST00000553034		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000360004		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000399450		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000444645		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000460546		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000328980		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000437784		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000419393		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000542100	ENST00000553034		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000360004		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000399450		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000444645		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000460546		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000328980		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000437784		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000419393		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-intron	ENST00000546212	ENST00000553034		ChiTaRS3.1			BQ029286	E2F6	chr2	11600260	-	HLA-DRB1	chr6	3934130	+
intron-3UTR	ENST00000401605	ENST00000402198		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401605	ENST00000402466		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401605	ENST00000406341		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401605	ENST00000407969		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000401605	ENST00000302463		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000401605	ENST00000488236		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401617	ENST00000402198		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401617	ENST00000402466		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401617	ENST00000406341		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000401617	ENST00000407969		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000401617	ENST00000302463		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000401617	ENST00000488236		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000404424	ENST00000402198		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000404424	ENST00000402466		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000404424	ENST00000406341		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000404424	ENST00000407969		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000404424	ENST00000302463		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000404424	ENST00000488236		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000320081	ENST00000402198		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000320081	ENST00000402466		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000320081	ENST00000406341		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000320081	ENST00000407969		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000320081	ENST00000302463		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000320081	ENST00000488236		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000481628	ENST00000402198		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000481628	ENST00000402466		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000481628	ENST00000406341		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-3UTR	ENST00000481628	ENST00000407969		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000481628	ENST00000302463		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-intron	ENST00000481628	ENST00000488236		ChiTaRS3.1			BE837056	CLIP4	chr2	29339685	+	SETD5	chr3	9519100	+
intron-5UTR	ENST00000377316	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377316	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377316	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377316	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377316	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377321	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377321	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377321	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377321	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377321	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377326	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377326	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377326	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377326	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377326	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000312049	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000312049	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000312049	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000312049	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000312049	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000315422	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000315422	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000315422	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000315422	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000315422	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000443283	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000443283	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000443283	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000443283	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000443283	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394374	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394374	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394374	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394374	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394374	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000337652	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000337652	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000337652	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000337652	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000337652	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394376	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394376	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394376	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394376	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000394376	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377313	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377313	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377313	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377313	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000377313	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000478548	ENST00000550241		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000478548	ENST00000602871		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000478548	ENST00000394349		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000478548	ENST00000549164		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-5UTR	ENST00000478548	ENST00000338662		ChiTaRS3.1			BF798946	MEN1	chr11	64571527	+	ATP5G2	chr12	54062985	-
intron-3UTR	ENST00000571995	ENST00000571995		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000571995	ENST00000571880		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000571995	ENST00000269347		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000571995	ENST00000538809		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000571880	ENST00000571995		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000571880	ENST00000571880		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000571880	ENST00000269347		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000571880	ENST00000538809		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000269347	ENST00000571995		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000269347	ENST00000571880		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000269347	ENST00000269347		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000269347	ENST00000538809		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000538809	ENST00000571995		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000538809	ENST00000571880		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-3UTR	ENST00000538809	ENST00000269347		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000538809	ENST00000538809		ChiTaRS3.1			AA640526	RAB40B	chr17	80614950	-	RAB40B	chr17	80615094	+
intron-intron	ENST00000259089	ENST00000259089		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000259089	ENST00000529894		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000259089	ENST00000525389		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000529894	ENST00000259089		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000529894	ENST00000529894		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000529894	ENST00000525389		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000525389	ENST00000259089		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000525389	ENST00000529894		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
intron-intron	ENST00000525389	ENST00000525389		ChiTaRS3.1			AW737026	BLK	chr8	11419804	+	BLK	chr8	11419903	-
3UTR-intron	ENST00000602402	ENST00000434013		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
3UTR-3UTR	ENST00000602402	ENST00000541064		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
3UTR-3UTR	ENST00000602402	ENST00000555619		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
3UTR-3UTR	ENST00000602402	ENST00000238633		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
3UTR-intron	ENST00000602402	ENST00000557510		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
intron-intron	ENST00000376795	ENST00000434013		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
intron-3UTR	ENST00000376795	ENST00000541064		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
intron-3UTR	ENST00000376795	ENST00000555619		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
intron-3UTR	ENST00000376795	ENST00000238633		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
intron-intron	ENST00000376795	ENST00000557510		ChiTaRS3.1			BE004606	DNAJC3	chr13	96444701	-	NPC2	chr14	74946734	+
3UTR-3CDS	ENST00000378565	ENST00000378565		ChiTaRS3.1			EB388086	ITM2B	chr13	48835898	-	ITM2B	chr13	48832266	+
3UTR-intron	ENST00000378565	ENST00000378549		ChiTaRS3.1			EB388086	ITM2B	chr13	48835898	-	ITM2B	chr13	48832266	+
intron-3CDS	ENST00000378549	ENST00000378565		ChiTaRS3.1			EB388086	ITM2B	chr13	48835898	-	ITM2B	chr13	48832266	+
intron-intron	ENST00000378549	ENST00000378549		ChiTaRS3.1			EB388086	ITM2B	chr13	48835898	-	ITM2B	chr13	48832266	+
intron-intron	ENST00000338687	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000338687	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000545398	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000545398	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372939	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372939	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372935	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372935	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372936	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372936	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000372931	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000372931	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-intron	ENST00000478422	ENST00000573001		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000326577		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000341627		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
intron-3UTR	ENST00000478422	ENST00000575124		ChiTaRS3.1			BI056376	TRMT2B	chrX	100264905	+	TNFRSF12A	chr16	3072102	-
5UTR-5UTR	ENST00000521831	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521831	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521831	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521831	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000355315	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000355315	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000355315	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000355315	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000303759	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000303759	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000303759	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000303759	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000517933	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000517933	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000517933	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000517933	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000518801	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000518801	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000518801	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000518801	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000523975	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523975	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523975	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523975	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000396723	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000396723	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000396723	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000396723	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000523061	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523061	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523061	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000523061	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-5UTR	ENST00000521524	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521524	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521524	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
5UTR-intron	ENST00000521524	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
intron-5UTR	ENST00000519367	ENST00000316981		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
intron-intron	ENST00000519367	ENST00000423799		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
intron-intron	ENST00000519367	ENST00000429357		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
intron-intron	ENST00000519367	ENST00000519027		ChiTaRS3.1			DQ478931	CHCHD7	chr8	57124398	+	PLAG1	chr8	57092074	-
In-frame	ENST00000373566	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373566	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373566	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373566	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373566	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373566	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000373566	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000373566	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000373563	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000373563	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000373563	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409480	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409480	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409480	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409547	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409547	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409547	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409196	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409196	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409196	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
In-frame	ENST00000409451	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409451	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
5CDS-intron	ENST00000409451	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000482666	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-intron	ENST00000482666	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-intron	ENST00000482666	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000373566		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000373563		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000409480		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000409547		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000409196		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3CDS	ENST00000452341	ENST00000409451		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-intron	ENST00000452341	ENST00000482666		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-intron	ENST00000452341	ENST00000452341		ChiTaRS3.1			Z78386	GIGYF2	chr2	233715019	+	GIGYF2	chr2	233680416	+
intron-3UTR	ENST00000544484	ENST00000544484		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544484	ENST00000357008		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544484	ENST00000309577		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544484	ENST00000544040		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-intron	ENST00000544484	ENST00000540960		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000357008	ENST00000544484		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000357008	ENST00000357008		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000357008	ENST00000309577		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000357008	ENST00000544040		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-intron	ENST00000357008	ENST00000540960		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000309577	ENST00000544484		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000309577	ENST00000357008		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000309577	ENST00000309577		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000309577	ENST00000544040		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-intron	ENST00000309577	ENST00000540960		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544040	ENST00000544484		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544040	ENST00000357008		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544040	ENST00000309577		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000544040	ENST00000544040		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-intron	ENST00000544040	ENST00000540960		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000540960	ENST00000544484		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000540960	ENST00000357008		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000540960	ENST00000309577		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3UTR	ENST00000540960	ENST00000544040		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-intron	ENST00000540960	ENST00000540960		ChiTaRS3.1			AA639516	CHD4	chr12	6690326	+	CHD4	chr12	6679707	+
intron-3CDS	ENST00000305264	ENST00000367071		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-3CDS	ENST00000305264	ENST00000291700		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-3CDS	ENST00000305264	ENST00000397648		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-3CDS	ENST00000469207	ENST00000367071		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-3CDS	ENST00000469207	ENST00000291700		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-3CDS	ENST00000469207	ENST00000397648		ChiTaRS3.1			AV717686	HDAC3	chr5	141000772	-	S100B	chr21	48022311	-
intron-5UTR	ENST00000263390	ENST00000542802		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-5UTR	ENST00000263390	ENST00000312010		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-intron	ENST00000263390	ENST00000449938		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-intron	ENST00000263390	ENST00000588467		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-5UTR	ENST00000263390	ENST00000589424		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-5UTR	ENST00000263390	ENST00000590546		ChiTaRS3.1			DA456356	MED26	chr19	16683835	+	USP36	chr17	76834833	-
intron-3UTR	ENST00000398637	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000398637	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000398637	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549049	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549049	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549049	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000439706	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000439706	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000439706	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000546893	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000546893	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000546893	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549633	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549633	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000549633	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000552197	ENST00000263238		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000552197	ENST00000536059		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000552197	ENST00000535589		ChiTaRS3.1			BE708046	SLC38A1	chr12	46578574	+	ACTR3	chr2	114715073	-
intron-3UTR	ENST00000300134	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000300134	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000300134	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000300134	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000300134	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000300134	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000538913	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000538913	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000538913	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000538913	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000538913	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000538913	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000543873	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000543873	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000543873	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000543873	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000543873	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000543873	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000556155	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000556155	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000556155	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000556155	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000556155	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000556155	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000537215	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000537215	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000537215	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000537215	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000537215	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000537215	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000454075	ENST00000335742		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000454075	ENST00000261509		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000454075	ENST00000505667		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000454075	ENST00000333488		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000454075	ENST00000512127		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-3UTR	ENST00000454075	ENST00000507735		ChiTaRS3.1			BG953466	STAT6	chr12	57489821	+	PALLD	chr4	169848998	-
intron-intron	ENST00000376030	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000167462		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000375227		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000392550		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000578363		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000577200		ChiTaRS3.1			AW002886	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
3UTR-3CDS	ENST00000230419	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000230419	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000230419	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000230419	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000230419	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000230419	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000230419	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000349241	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000349241	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000349241	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000349241	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000349241	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000349241	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000349241	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000345201	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000345201	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000345201	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000345201	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000345201	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000345201	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000345201	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000352931	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000352931	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000352931	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000352931	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-3CDS	ENST00000352931	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000352931	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
3UTR-intron	ENST00000352931	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000481273	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000481273	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000481273	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000481273	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000481273	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000481273	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000481273	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000476760	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000476760	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000476760	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000476760	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000476760	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000476760	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000476760	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000471863	ENST00000230419		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000471863	ENST00000349241		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000471863	ENST00000345201		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000471863	ENST00000352931		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3CDS	ENST00000471863	ENST00000481273		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000471863	ENST00000476760		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-intron	ENST00000471863	ENST00000471863		ChiTaRS3.1			AA490376	PTK7	chr6	43129190	+	PTK7	chr6	43098312	+
intron-3UTR	ENST00000253861	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000253861	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-3UTR	ENST00000539845	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000539845	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-3UTR	ENST00000393161	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000393161	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-3UTR	ENST00000545148	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000545148	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-3UTR	ENST00000460346	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000460346	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-3UTR	ENST00000541309	ENST00000228515		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000541309	ENST00000550461		ChiTaRS3.1			AW579506	EXOC4	chr7	133381183	+	CSRNP2	chr12	51455848	-
intron-intron	ENST00000533902	ENST00000533902		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000280258		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000441050		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000531521		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000533902		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000280258		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000441050		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000531521		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000533902		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000280258		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000441050		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000531521		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000533902		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000280258		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000441050		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000531521		ChiTaRS3.1			AW841356	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-3CDS	ENST00000357214	ENST00000357214		ChiTaRS3.1			BE926576	SFPQ	chr1	35656449	+	SFPQ	chr1	35652657	+
intron-intron	ENST00000357214	ENST00000468598		ChiTaRS3.1			BE926576	SFPQ	chr1	35656449	+	SFPQ	chr1	35652657	+
intron-3CDS	ENST00000468598	ENST00000357214		ChiTaRS3.1			BE926576	SFPQ	chr1	35656449	+	SFPQ	chr1	35652657	+
intron-intron	ENST00000468598	ENST00000468598		ChiTaRS3.1			BE926576	SFPQ	chr1	35656449	+	SFPQ	chr1	35652657	+
intron-intron	ENST00000316549	ENST00000315183		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000316549	ENST00000562829		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000316549	ENST00000395799		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000316549	ENST00000432286		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000498717	ENST00000315183		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000498717	ENST00000562829		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000498717	ENST00000395799		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000498717	ENST00000432286		ChiTaRS3.1			CV353496	SLC9A9	chr3	143030963	+	TNRC6A	chr16	24769851	-
intron-intron	ENST00000341657	ENST00000341657		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000341657	ENST00000570535		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000341657	ENST00000574367		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000341657	ENST00000573722		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000341657	ENST00000433651		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000570535	ENST00000341657		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000570535	ENST00000570535		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000570535	ENST00000574367		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000570535	ENST00000573722		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000570535	ENST00000433651		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000574367	ENST00000341657		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000574367	ENST00000570535		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000574367	ENST00000574367		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000574367	ENST00000573722		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000574367	ENST00000433651		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000573722	ENST00000341657		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000573722	ENST00000570535		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000573722	ENST00000574367		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000573722	ENST00000573722		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000573722	ENST00000433651		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000433651	ENST00000341657		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000433651	ENST00000570535		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000433651	ENST00000574367		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000433651	ENST00000573722		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000433651	ENST00000433651		ChiTaRS3.1			BE144976	ANKFY1	chr17	4145124	+	ANKFY1	chr17	4143652	+
intron-intron	ENST00000265070	ENST00000449098		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000320084		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000336053		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000554969		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000556142		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000554455		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000430246		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000553753		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000555914		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000555309		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000556628		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000555883		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000556513		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000557201		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000553300		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000556897		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000265070	ENST00000420743		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000449098		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000320084		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000336053		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000554969		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000556142		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000554455		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000430246		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000553753		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000555914		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000555309		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000556628		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000555883		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000556513		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000557201		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000553300		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000556897		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
intron-intron	ENST00000512668	ENST00000420743		ChiTaRS3.1			CV404756	GOLPH3	chr5	32158632	+	HNRNPC	chr14	21727739	+
3UTR-3UTR	ENST00000290551	ENST00000290551		ChiTaRS3.1			BE935216	BTG2	chr1	203277314	-	BTG2	chr1	203277899	-
intron-intron	ENST00000261839	ENST00000287912		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000401878		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000392759		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000486747		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000261839	ENST00000341148		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000287912		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000401878		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000392759		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000486747		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000443683	ENST00000341148		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000287912		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000401878		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000392759		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000486747		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-intron	ENST00000541028	ENST00000341148		ChiTaRS3.1			BF834846	MYO5C	chr15	52540225	-	RBM33	chr7	155461668	+
intron-3UTR	ENST00000335508	ENST00000298569		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-5UTR	ENST00000335508	ENST00000393728		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000335508	ENST00000393725		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000335508	ENST00000510164		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000335508	ENST00000533553		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000462613	ENST00000298569		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-5UTR	ENST00000462613	ENST00000393728		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000462613	ENST00000393725		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000462613	ENST00000510164		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000462613	ENST00000533553		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000409915	ENST00000298569		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-5UTR	ENST00000409915	ENST00000393728		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000409915	ENST00000393725		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000409915	ENST00000510164		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000409915	ENST00000533553		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000414963	ENST00000298569		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-5UTR	ENST00000414963	ENST00000393728		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000414963	ENST00000393725		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000414963	ENST00000510164		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000414963	ENST00000533553		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000487698	ENST00000298569		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-5UTR	ENST00000487698	ENST00000393728		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-3UTR	ENST00000487698	ENST00000393725		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000487698	ENST00000510164		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
intron-intron	ENST00000487698	ENST00000533553		ChiTaRS3.1			BG573946	SF3B1	chr2	198288654	-	KIAA1191	chr5	175773667	-
3UTR-3CDS	ENST00000379370	ENST00000311528		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
3UTR-3CDS	ENST00000379370	ENST00000567815		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
3UTR-3CDS	ENST00000379370	ENST00000452368		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
3UTR-3CDS	ENST00000379370	ENST00000393099		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
intron-3CDS	ENST00000477585	ENST00000311528		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
intron-3CDS	ENST00000477585	ENST00000567815		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
intron-3CDS	ENST00000477585	ENST00000452368		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
intron-3CDS	ENST00000477585	ENST00000393099		ChiTaRS3.1			BG423236	AGRN	chr1	991423	-	RPL13	chr16	89628763	+
intron-3CDS	ENST00000529163	ENST00000557515		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000338631		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000357481		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000605057		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000457657		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000262710		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000397341		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000529163	ENST00000555053		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-intron	ENST00000529163	ENST00000555352		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000557515		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000338631		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000357481		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000605057		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000457657		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000262710		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000397341		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000394920	ENST00000555053		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-intron	ENST00000394920	ENST00000555352		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000557515		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000338631		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000357481		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000605057		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000457657		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000262710		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000397341		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000527914	ENST00000555053		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-intron	ENST00000527914	ENST00000555352		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000557515		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000338631		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000357481		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000605057		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000457657		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000262710		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000397341		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000262584	ENST00000555053		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-intron	ENST00000262584	ENST00000555352		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000557515		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000338631		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000357481		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000605057		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000457657		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000262710		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000397341		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-3CDS	ENST00000528957	ENST00000555053		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
intron-intron	ENST00000528957	ENST00000555352		ChiTaRS3.1			CX752756	RPL8	chr8	146015760	-	ACIN1	chr14	23531702	-
Frame-shit	ENST00000295897	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000295897	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000295897	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000415165	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000415165	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000503124	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000503124	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000509063	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000509063	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
Frame-shit	ENST00000401494	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
5CDS-3UTR	ENST00000401494	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000295897		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000415165		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000503124		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000509063		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3CDS	ENST00000505649	ENST00000401494		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3UTR	ENST00000505649	ENST00000505649		ChiTaRS3.1			AF075316	ALB	chr4	74284021	+	ALB	chr4	74279160	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BQ632546	MALAT1	chr11	65267132	-	MALAT1	chr11	65267661	-
intron-3CDS	ENST00000262554	ENST00000262554		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000262554	ENST00000482632		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000262554	ENST00000337841		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-3CDS	ENST00000482632	ENST00000262554		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000482632	ENST00000482632		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000482632	ENST00000337841		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-3CDS	ENST00000337841	ENST00000262554		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000337841	ENST00000482632		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-5UTR	ENST00000337841	ENST00000337841		ChiTaRS3.1			BF803026	SPTLC1	chr9	94821587	+	SPTLC1	chr9	94842354	-
intron-3UTR	ENST00000263754	ENST00000528852		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-3UTR	ENST00000263754	ENST00000311445		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-intron	ENST00000263754	ENST00000530519		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-3UTR	ENST00000426228	ENST00000528852		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-3UTR	ENST00000426228	ENST00000311445		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-intron	ENST00000426228	ENST00000530519		ChiTaRS3.1			BI912966	KAT2B	chr3	20120316	+	CNIH2	chr11	66051619	+
intron-3CDS	ENST00000444303	ENST00000371589		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000444303	ENST00000474902		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000444303	ENST00000540391		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-3CDS	ENST00000396554	ENST00000371589		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000396554	ENST00000474902		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000396554	ENST00000540391		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-3CDS	ENST00000530864	ENST00000371589		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000530864	ENST00000474902		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-intron	ENST00000530864	ENST00000540391		ChiTaRS3.1			BF915326	AMPD3	chr11	10494805	-	MAN1B1	chr9	139983346	-
intron-3CDS	ENST00000374140	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000374140	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000374140	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000350696	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000350696	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000350696	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000317613	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000317613	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000317613	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000343817	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000343817	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000343817	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000394646	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000394646	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000394646	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000374136	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000374136	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000374136	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000462143	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000462143	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000462143	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000463806	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000463806	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000463806	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000342620	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000342620	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000342620	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000374134	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000374134	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000374134	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000462403	ENST00000388712		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-3CDS	ENST00000462403	ENST00000388711		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-5UTR	ENST00000462403	ENST00000257504		ChiTaRS3.1			BG985226	RGS3	chr9	116292479	+	GOLM1	chr9	88655741	+
intron-intron	ENST00000546323	ENST00000546323		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-intron	ENST00000546323	ENST00000536503		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-3UTR	ENST00000546323	ENST00000282892		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-intron	ENST00000536503	ENST00000546323		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-intron	ENST00000536503	ENST00000536503		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-3UTR	ENST00000536503	ENST00000282892		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
3UTR-intron	ENST00000282892	ENST00000546323		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
3UTR-intron	ENST00000282892	ENST00000536503		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
3UTR-3UTR	ENST00000282892	ENST00000282892		ChiTaRS3.1			AA662056	MED21	chr12	27182670	+	MED21	chr12	27182516	-
intron-intron	ENST00000528282	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000528282	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530481	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530481	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000445890	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000445890	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000337057	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000337057	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530757	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530757	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000392427	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000392427	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000368128	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000368128	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000527411	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000527411	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000524581	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000524581	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000525271	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000525271	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000525193	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000525193	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000527659	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000527659	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000529208	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000529208	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000531410	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000531410	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530148	ENST00000359842		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000530148	ENST00000470566		ChiTaRS3.1			BM714636	EPB41L2	chr6	131160718	-	RXRG	chr1	165370782	-
intron-intron	ENST00000381086	ENST00000381086		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381086	ENST00000275521		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381086	ENST00000381083		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381086	ENST00000465642		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000275521	ENST00000381086		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000275521	ENST00000275521		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000275521	ENST00000381083		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000275521	ENST00000465642		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381083	ENST00000381086		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381083	ENST00000275521		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381083	ENST00000381083		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000381083	ENST00000465642		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000465642	ENST00000381086		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000465642	ENST00000275521		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000465642	ENST00000381083		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-intron	ENST00000465642	ENST00000465642		ChiTaRS3.1			DA554686	IGFBP3	chr7	45953389	-	IGFBP3	chr7	45960533	-
intron-3CDS	ENST00000607016	ENST00000380358		ChiTaRS3.1			BF737506	NUDT3	chr6	34261287	-	CHD3	chr17	7807291	-
intron-3CDS	ENST00000607016	ENST00000358181		ChiTaRS3.1			BF737506	NUDT3	chr6	34261287	-	CHD3	chr17	7807291	-
intron-3CDS	ENST00000607016	ENST00000330494		ChiTaRS3.1			BF737506	NUDT3	chr6	34261287	-	CHD3	chr17	7807291	-
intron-intron	ENST00000607016	ENST00000570758		ChiTaRS3.1			BF737506	NUDT3	chr6	34261287	-	CHD3	chr17	7807291	-
intron-intron	ENST00000464524	ENST00000464524		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
intron-intron	ENST00000464524	ENST00000418611		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
intron-intron	ENST00000464524	ENST00000389061		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
intron-intron	ENST00000464524	ENST00000541314		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000418611	ENST00000464524		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000418611	ENST00000418611		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000418611	ENST00000389061		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000418611	ENST00000541314		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000389061	ENST00000464524		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000389061	ENST00000418611		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000389061	ENST00000389061		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000389061	ENST00000541314		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000541314	ENST00000464524		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000541314	ENST00000418611		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000541314	ENST00000389061		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
5CDS-intron	ENST00000541314	ENST00000541314		ChiTaRS3.1			CA949726	SACM1L	chr3	45781107	-	SACM1L	chr3	45785077	+
intron-3UTR	ENST00000369037	ENST00000369037		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000369037	ENST00000453874		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000369037	ENST00000369031		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-3UTR	ENST00000453874	ENST00000369037		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000453874	ENST00000453874		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000453874	ENST00000369031		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-3UTR	ENST00000369031	ENST00000369037		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000369031	ENST00000453874		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-intron	ENST00000369031	ENST00000369031		ChiTaRS3.1			CA313496	PDSS2	chr6	107474000	+	PDSS2	chr6	107474566	-
intron-3UTR	ENST00000369443	ENST00000369443		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000369443	ENST00000369442		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000369443	ENST00000464026		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-3UTR	ENST00000369442	ENST00000369443		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000369442	ENST00000369442		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000369442	ENST00000464026		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-3UTR	ENST00000464026	ENST00000369443		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000464026	ENST00000369442		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000464026	ENST00000464026		ChiTaRS3.1			BE064706	GDAP2	chr1	118406501	-	GDAP2	chr1	118406425	+
intron-intron	ENST00000371217	ENST00000566780		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000406884		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000539474		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000402655		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000408984		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000355860		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000565791		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371217	ENST00000569818		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000566780		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000406884		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000539474		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000402655		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000408984		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000355860		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000565791		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000265993	ENST00000569818		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000566780		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000406884		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000539474		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000402655		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000408984		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000355860		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000565791		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000430368	ENST00000569818		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000566780		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000406884		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000539474		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000402655		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000408984		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000355860		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000565791		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000371209	ENST00000569818		ChiTaRS3.1			AW576726	TCTN3	chr10	97446847	+	WWOX	chr16	78495424	+
intron-intron	ENST00000300291	ENST00000375838		ChiTaRS3.1			AW375576	NUDT21	chr16	56465638	-	DNAJC16	chr1	47101218	+
intron-intron	ENST00000300291	ENST00000375847		ChiTaRS3.1			AW375576	NUDT21	chr16	56465638	-	DNAJC16	chr1	47101218	+
intron-intron	ENST00000300291	ENST00000375849		ChiTaRS3.1			AW375576	NUDT21	chr16	56465638	-	DNAJC16	chr1	47101218	+
intron-intron	ENST00000300291	ENST00000483270		ChiTaRS3.1			AW375576	NUDT21	chr16	56465638	-	DNAJC16	chr1	47101218	+
3UTR-3UTR	ENST00000265109	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000265109	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000265109	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000265109	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000265109	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000265109	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000265109	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000265109	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000512629	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000512629	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000512629	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000512629	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000512629	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000512629	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000512629	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000512629	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000428746	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000428746	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000428746	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000428746	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000428746	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000428746	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000428746	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000428746	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000503673	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000503673	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000503673	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000503673	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000503673	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000503673	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000503673	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000503673	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000515799	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000515799	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000515799	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000515799	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000515799	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000515799	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000515799	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000515799	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000506376	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000506376	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000506376	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000506376	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000506376	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000506376	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000506376	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000506376	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000507276	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000507276	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000507276	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000507276	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000507276	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000507276	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-intron	ENST00000507276	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-3UTR	ENST00000507276	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000397449	ENST00000265109		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000397449	ENST00000512629		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000397449	ENST00000428746		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000397449	ENST00000503673		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000397449	ENST00000515799		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000397449	ENST00000506376		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-intron	ENST00000397449	ENST00000507276		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
3UTR-3UTR	ENST00000397449	ENST00000397449		ChiTaRS3.1			CA313526	RAI14	chr5	34832571	-	RAI14	chr5	34832464	+
intron-5UTR	ENST00000502517	ENST00000502517		ChiTaRS3.1			BG959766	LINC00483	chr17	48836343	+	LINC00483	chr17	48840906	-
intron-3UTR	ENST00000216181	ENST00000246151		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000216181	ENST00000374524		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000475726	ENST00000246151		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000475726	ENST00000374524		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000401701	ENST00000246151		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-3UTR	ENST00000401701	ENST00000374524		ChiTaRS3.1			AK093546	MYH9	chr22	36730924	-	PITHD1	chr1	24113959	+
intron-intron	ENST00000478654	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000478654	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000460911	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000350995	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000320356	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000541220	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000476773	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000483967	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000478654		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000460911		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000350995		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000320356		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000541220		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000476773		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000483967		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
intron-intron	ENST00000536783	ENST00000536783		ChiTaRS3.1			BF223536	EZH2	chr7	148508935	+	EZH2	chr7	148508915	-
5CDS-intron	ENST00000391726	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391726	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391726	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391726	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391726	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000469767	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000469767	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000469767	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000469767	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000355524	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000355524	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000355524	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000355524	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000345937	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000345937	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000345937	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000345937	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391725	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391725	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391725	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391725	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391724	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391724	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391724	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391724	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000359272	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000359272	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000359272	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000359272	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-intron	ENST00000482092	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-3UTR	ENST00000482092	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-3UTR	ENST00000482092	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
3UTR-3UTR	ENST00000482092	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-intron	ENST00000391723	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391723	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391723	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
5CDS-3UTR	ENST00000391723	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000391726		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000469767		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000355524		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000345937		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000391725		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000391724		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000353758	ENST00000359272		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-3UTR	ENST00000353758	ENST00000482092		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-3UTR	ENST00000353758	ENST00000391723		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-3UTR	ENST00000353758	ENST00000353758		ChiTaRS3.1			BI030876	FCAR	chr19	55396717	+	FCAR	chr19	55399484	-
intron-intron	ENST00000258484	ENST00000380958		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000258484	ENST00000399613		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000258484	ENST00000282391		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000258484	ENST00000483842		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000409654	ENST00000380958		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000409654	ENST00000399613		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000409654	ENST00000282391		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-intron	ENST00000409654	ENST00000483842		ChiTaRS3.1			CV341936	EPC2	chr2	149523284	+	PAN3	chr13	28778207	+
intron-3CDS	ENST00000340855	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000340855	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000340855	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000340855	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000340855	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000340855	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000340855	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000340855	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000340855	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000537071	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000537071	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000537071	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000537071	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000537071	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000537071	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000537071	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000537071	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000537071	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000541269	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000541269	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000541269	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000541269	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000541269	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000541269	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000541269	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000541269	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000541269	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000422081	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000422081	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000422081	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000422081	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000422081	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000422081	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000422081	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000422081	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000422081	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370441	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370441	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370441	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370441	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370441	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370441	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370441	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370441	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370441	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000490775	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000490775	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000490775	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000490775	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000490775	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000490775	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000490775	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000490775	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000490775	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370443	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370443	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370443	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000370443	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370443	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370443	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370443	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370443	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000370443	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000427113	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000427113	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000427113	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000427113	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000427113	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000427113	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000427113	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000427113	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000427113	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000428056	ENST00000340855		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000428056	ENST00000537071		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000428056	ENST00000541269		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-3CDS	ENST00000428056	ENST00000422081		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000428056	ENST00000370441		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000428056	ENST00000490775		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000428056	ENST00000370443		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000428056	ENST00000427113		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000428056	ENST00000428056		ChiTaRS3.1			CB306816	IDS	chrX	148564400	+	IDS	chrX	148564520	-
intron-intron	ENST00000342704	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000342704	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000375279	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000344201	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397798	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000346541	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000397800	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000492345	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000359606	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000491618	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000413405		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000414457		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000446807		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000423223		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000445521		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000455774		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000430295		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000608994		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000609413		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000537908		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000427063		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000543126	ENST00000438202		ChiTaRS3.1			AW241736	CBFA2T2	chr20	32211532	-	PTCHD3P1	chr10	29748715	-
intron-intron	ENST00000298834	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000298834	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000298834	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000298834	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000298834	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000426438	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000426438	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000426438	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000426438	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000426438	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000314845	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000314845	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000314845	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000314845	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000314845	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000533727	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000533727	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000533727	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000533727	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000533727	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000534300	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000534300	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000534300	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000534300	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000534300	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000458649	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000458649	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000458649	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000458649	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000458649	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000528950	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000528950	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000528950	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000528950	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000528950	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000529963	ENST00000521891		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000529963	ENST00000517683		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000529963	ENST00000050961		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000529963	ENST00000455469		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-intron	ENST00000529963	ENST00000518282		ChiTaRS3.1			AW389896	AMBRA1	chr11	46496512	-	ZFHX4	chr8	77699520	+
intron-3UTR	ENST00000216410	ENST00000442123		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-3UTR	ENST00000216410	ENST00000354586		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-intron	ENST00000216410	ENST00000556861		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-3UTR	ENST00000554421	ENST00000442123		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-3UTR	ENST00000554421	ENST00000354586		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-intron	ENST00000554421	ENST00000556861		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-3UTR	ENST00000554230	ENST00000442123		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-3UTR	ENST00000554230	ENST00000354586		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-intron	ENST00000554230	ENST00000556861		ChiTaRS3.1			DW412766	GNPNAT1	chr14	53255709	+	STYX	chr14	53241434	+
intron-5UTR	ENST00000498485	ENST00000498485		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000498485	ENST00000259457		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000498485	ENST00000536392		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000259457	ENST00000498485		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000259457	ENST00000259457		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000259457	ENST00000536392		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000536392	ENST00000498485		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000536392	ENST00000259457		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-5UTR	ENST00000536392	ENST00000536392		ChiTaRS3.1			BQ424626	PSMB7	chr9	127177699	+	PSMB7	chr9	127174738	-
intron-intron	ENST00000215882	ENST00000335154		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000215882	ENST00000550488		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000215882	ENST00000352151		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000215882	ENST00000293590		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000215882	ENST00000550668		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000451283	ENST00000335154		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000451283	ENST00000550488		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000451283	ENST00000352151		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000451283	ENST00000293590		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000451283	ENST00000550668		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000461267	ENST00000335154		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000461267	ENST00000550488		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000461267	ENST00000352151		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000461267	ENST00000293590		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-intron	ENST00000461267	ENST00000550668		ChiTaRS3.1			AI394736	SLC25A1	chr22	19163213	+	FMNL3	chr12	50069340	+
intron-3CDS	ENST00000383744	ENST00000383744		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383744	ENST00000344387		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383744	ENST00000383745		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383744	ENST00000396058		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
In-frame	ENST00000344387	ENST00000383744		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
In-frame	ENST00000344387	ENST00000344387		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
In-frame	ENST00000344387	ENST00000383745		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
Frame-shit	ENST00000344387	ENST00000396058		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383745	ENST00000383744		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383745	ENST00000344387		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383745	ENST00000383745		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
intron-3CDS	ENST00000383745	ENST00000396058		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
Frame-shit	ENST00000396058	ENST00000383744		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
Frame-shit	ENST00000396058	ENST00000344387		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
Frame-shit	ENST00000396058	ENST00000383745		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
In-frame	ENST00000396058	ENST00000396058		ChiTaRS3.1			BI057816	ZNF197	chr3	44683481	+	ZNF197	chr3	44670762	+
3UTR-3UTR	ENST00000249356	ENST00000299427		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-3UTR	ENST00000249356	ENST00000533371		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-intron	ENST00000249356	ENST00000534644		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
3UTR-intron	ENST00000249356	ENST00000528657		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-3UTR	ENST00000465725	ENST00000299427		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-3UTR	ENST00000465725	ENST00000533371		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-intron	ENST00000465725	ENST00000534644		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-intron	ENST00000465725	ENST00000528657		ChiTaRS3.1			AW956976	DNAJB9	chr7	108214110	-	TPP1	chr11	6634997	+
intron-3CDS	ENST00000287275	ENST00000287275		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000287275	ENST00000532258		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000287275	ENST00000533636		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000532258	ENST00000287275		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000532258	ENST00000532258		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000532258	ENST00000533636		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000533636	ENST00000287275		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-3CDS	ENST00000533636	ENST00000532258		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000533636	ENST00000533636		ChiTaRS3.1			BU676996	GLYATL2	chr11	58601640	+	GLYATL2	chr11	58602112	-
intron-intron	ENST00000295408	ENST00000295408		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000295408	ENST00000421804		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000295408	ENST00000409780		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000421804	ENST00000295408		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000421804	ENST00000421804		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000421804	ENST00000409780		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000409780	ENST00000295408		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000409780	ENST00000421804		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000409780	ENST00000409780		ChiTaRS3.1			BE178416	MERTK	chr2	112663328	-	MERTK	chr2	112664319	-
intron-intron	ENST00000295240	ENST00000543923		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000435985		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000280020		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000591619		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000586135		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000592521		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000586501		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000295240	ENST00000601437		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000543923		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000435985		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000280020		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000591619		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000586135		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000592521		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000586501		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000554017	ENST00000601437		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000543923		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000435985		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000280020		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000591619		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000586135		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000592521		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000586501		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
intron-intron	ENST00000392663	ENST00000601437		ChiTaRS3.1			BQ356256	BBS5	chr2	170355998	-	KIAA1328	chr18	34567677	-
In-frame	ENST00000538352	ENST00000538352		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000538352	ENST00000025399		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000538352	ENST00000419869		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000025399	ENST00000538352		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000025399	ENST00000025399		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000025399	ENST00000419869		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000419869	ENST00000538352		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000419869	ENST00000025399		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
In-frame	ENST00000419869	ENST00000419869		ChiTaRS3.1			BI862036	STRAP	chr12	16048392	-	STRAP	chr12	16050814	+
intron-intron	ENST00000383791	ENST00000307378		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000383791	ENST00000537524		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000383791	ENST00000473830		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000383791	ENST00000452078		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000383791	ENST00000458504		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000383791	ENST00000390670		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000307378		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000537524		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000473830		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000452078		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000458504		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000253688	ENST00000390670		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000307378		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000537524		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000473830		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000452078		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000458504		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000426925	ENST00000390670		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000307378		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000537524		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000473830		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000452078		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000458504		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000408919	ENST00000390670		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000307378		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000537524		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000473830		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000452078		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000458504		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-intron	ENST00000465894	ENST00000390670		ChiTaRS3.1			BP384906	SH3BP5	chr3	15368962	-	SLCO1A2	chr12	21531983	+
intron-5UTR	ENST00000171887	ENST00000546591		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000171887	ENST00000501597		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000171887	ENST00000552314		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000419504	ENST00000546591		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000419504	ENST00000501597		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000419504	ENST00000552314		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000430930	ENST00000546591		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000430930	ENST00000501597		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000430930	ENST00000552314		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000310858	ENST00000546591		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000310858	ENST00000501597		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000310858	ENST00000552314		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000480665	ENST00000546591		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000480665	ENST00000501597		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-5UTR	ENST00000480665	ENST00000552314		ChiTaRS3.1			AI174756	TNS1	chr2	218694896	+	RPL41	chr12	56510562	+
intron-3UTR	ENST00000437198	ENST00000534336		ChiTaRS3.1			BG572766	PARN	chr16	14704613	-	MALAT1	chr11	65270148	+
intron-3UTR	ENST00000420015	ENST00000534336		ChiTaRS3.1			BG572766	PARN	chr16	14704613	-	MALAT1	chr11	65270148	+
intron-3UTR	ENST00000341484	ENST00000534336		ChiTaRS3.1			BG572766	PARN	chr16	14704613	-	MALAT1	chr11	65270148	+
intron-3UTR	ENST00000539279	ENST00000534336		ChiTaRS3.1			BG572766	PARN	chr16	14704613	-	MALAT1	chr11	65270148	+
intron-3UTR	ENST00000566021	ENST00000534336		ChiTaRS3.1			BG572766	PARN	chr16	14704613	-	MALAT1	chr11	65270148	+
Frame-shit	ENST00000589037	ENST00000589037		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000589037	ENST00000253788		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
In-frame	ENST00000589037	ENST00000589913		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
5CDS-intron	ENST00000589037	ENST00000590864		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000253788	ENST00000589037		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000253788	ENST00000253788		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000253788	ENST00000589913		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
5CDS-intron	ENST00000253788	ENST00000590864		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000589913	ENST00000589037		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000589913	ENST00000253788		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000589913	ENST00000589913		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
5CDS-intron	ENST00000589913	ENST00000590864		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
In-frame	ENST00000590864	ENST00000589037		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
In-frame	ENST00000590864	ENST00000253788		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
Frame-shit	ENST00000590864	ENST00000589913		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
5CDS-intron	ENST00000590864	ENST00000590864		ChiTaRS3.1			BC021886	RPL27	chr17	41154906	-	RPL27	chr17	41150801	+
intron-intron	ENST00000309982	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000309982	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000438105	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000297574	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000330955	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000306391	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000543385		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000336727		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000344733		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000382788		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000306648		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000338806		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000508158		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-intron	ENST00000523754	ENST00000538395		ChiTaRS3.1			BI058636	BAALC	chr8	104178201	-	RGS12	chr4	3389909	+
intron-3UTR	ENST00000370192	ENST00000309166		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-intron	ENST00000370192	ENST00000531090		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-3UTR	ENST00000474241	ENST00000309166		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-intron	ENST00000474241	ENST00000531090		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-3UTR	ENST00000423006	ENST00000309166		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-intron	ENST00000423006	ENST00000531090		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-3UTR	ENST00000306031	ENST00000309166		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-intron	ENST00000306031	ENST00000531090		ChiTaRS3.1			BI603836	DPYD	chr1	98048815	-	NRIP3	chr11	9002769	-
intron-3CDS	ENST00000395146	ENST00000289968		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000395146	ENST00000441763		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000395146	ENST00000303665		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-intron	ENST00000395146	ENST00000575975		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3CDS	ENST00000307808	ENST00000289968		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000307808	ENST00000441763		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000307808	ENST00000303665		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-intron	ENST00000307808	ENST00000575975		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3CDS	ENST00000544085	ENST00000289968		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000544085	ENST00000441763		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000544085	ENST00000303665		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-intron	ENST00000544085	ENST00000575975		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3CDS	ENST00000511996	ENST00000289968		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000511996	ENST00000441763		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-3UTR	ENST00000511996	ENST00000303665		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-intron	ENST00000511996	ENST00000575975		ChiTaRS3.1			BI030606	AFF1	chr4	87928684	+	ARHGAP17	chr16	24942612	+
intron-intron	ENST00000383699	ENST00000429124		ChiTaRS3.1			BF230016	CADM2	chr3	85310733	+	FTX	chrX	73464613	-
intron-intron	ENST00000407528	ENST00000429124		ChiTaRS3.1			BF230016	CADM2	chr3	85310733	+	FTX	chrX	73464613	-
intron-intron	ENST00000405615	ENST00000429124		ChiTaRS3.1			BF230016	CADM2	chr3	85310733	+	FTX	chrX	73464613	-
intron-intron	ENST00000485126	ENST00000429124		ChiTaRS3.1			BF230016	CADM2	chr3	85310733	+	FTX	chrX	73464613	-
intron-intron	ENST00000357668	ENST00000487694		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000357668	ENST00000461745		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000357668	ENST00000332191		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000357668	ENST00000469233		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000518721	ENST00000487694		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000518721	ENST00000461745		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000518721	ENST00000332191		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000518721	ENST00000469233		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000520625	ENST00000487694		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000520625	ENST00000461745		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000520625	ENST00000332191		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000520625	ENST00000469233		ChiTaRS3.1			CK902636	ASAP1	chr8	131418992	-	ROBO2	chr3	77402910	+
intron-intron	ENST00000584307	ENST00000331768		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000584307	ENST00000329331		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000584307	ENST00000436070		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000584307	ENST00000453938		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000314574	ENST00000331768		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000314574	ENST00000329331		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000314574	ENST00000436070		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000314574	ENST00000453938		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577611	ENST00000331768		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577611	ENST00000329331		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577611	ENST00000436070		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577611	ENST00000453938		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577961	ENST00000331768		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577961	ENST00000329331		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577961	ENST00000436070		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000577961	ENST00000453938		ChiTaRS3.1			AI810066	YES1	chr18	721932	+	SETD3	chr14	99892308	+
intron-intron	ENST00000550241	ENST00000550241		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000550241	ENST00000602871		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000550241	ENST00000394349		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000550241	ENST00000549164		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000550241	ENST00000338662		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000602871	ENST00000550241		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000602871	ENST00000602871		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000602871	ENST00000394349		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000602871	ENST00000549164		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000602871	ENST00000338662		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000394349	ENST00000550241		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000394349	ENST00000602871		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000394349	ENST00000394349		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000394349	ENST00000549164		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000394349	ENST00000338662		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000549164	ENST00000550241		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000549164	ENST00000602871		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000549164	ENST00000394349		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000549164	ENST00000549164		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000549164	ENST00000338662		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000338662	ENST00000550241		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000338662	ENST00000602871		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000338662	ENST00000394349		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000338662	ENST00000549164		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000338662	ENST00000338662		ChiTaRS3.1			BF768786	ATP5G2	chr12	54066794	+	ATP5G2	chr12	54066579	-
intron-intron	ENST00000334232	ENST00000274276		ChiTaRS3.1			BF379986	EDARADD	chr1	236619568	-	OSMR	chr5	38904711	+
intron-intron	ENST00000334232	ENST00000502536		ChiTaRS3.1			BF379986	EDARADD	chr1	236619568	-	OSMR	chr5	38904711	+
intron-intron	ENST00000359362	ENST00000274276		ChiTaRS3.1			BF379986	EDARADD	chr1	236619568	-	OSMR	chr5	38904711	+
intron-intron	ENST00000359362	ENST00000502536		ChiTaRS3.1			BF379986	EDARADD	chr1	236619568	-	OSMR	chr5	38904711	+
intron-3CDS	ENST00000365032	ENST00000524918		ChiTaRS3.1			AK097596	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-3CDS	ENST00000365032	ENST00000313028		ChiTaRS3.1			AK097596	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-3CDS	ENST00000365032	ENST00000525773		ChiTaRS3.1			AK097596	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
intron-5UTR	ENST00000365032	ENST00000533665		ChiTaRS3.1			AK097596	SNHG11	chr20	37076141	+	PARP10	chr8	145059243	-
Frame-shit	ENST00000450943	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000450943	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000450943	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000450943	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000354888	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000354888	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000354888	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393108	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393108	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393108	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393110	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393110	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393110	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393106	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393106	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393106	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000393107	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393107	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000393107	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000409811	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000409811	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000409811	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000230419		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000349241		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000345201		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000352931		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
Frame-shit	ENST00000425223	ENST00000481273		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000425223	ENST00000476760		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
5CDS-intron	ENST00000425223	ENST00000471863		ChiTaRS3.1			BP287506	STEAP3	chr2	120003550	+	PTK7	chr6	43100233	+
intron-3CDS	ENST00000297785	ENST00000297785		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-3CDS	ENST00000297785	ENST00000376939		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-5UTR	ENST00000297785	ENST00000482210		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-3CDS	ENST00000376939	ENST00000297785		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-3CDS	ENST00000376939	ENST00000376939		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-5UTR	ENST00000376939	ENST00000482210		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-3CDS	ENST00000482210	ENST00000297785		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-3CDS	ENST00000482210	ENST00000376939		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-5UTR	ENST00000482210	ENST00000482210		ChiTaRS3.1			BQ317586	ALDH1A1	chr9	75543894	+	ALDH1A1	chr9	75545895	-
intron-intron	ENST00000545391	ENST00000545391		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000545391	ENST00000361171		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000545391	ENST00000436593		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000545391	ENST00000535766		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000545391	ENST00000485886		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000361171	ENST00000545391		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-3UTR	ENST00000361171	ENST00000361171		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000361171	ENST00000436593		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000361171	ENST00000535766		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-3UTR	ENST00000361171	ENST00000485886		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000436593	ENST00000545391		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000436593	ENST00000361171		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000436593	ENST00000436593		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000436593	ENST00000535766		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000436593	ENST00000485886		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000535766	ENST00000545391		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000535766	ENST00000361171		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000535766	ENST00000436593		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-intron	ENST00000535766	ENST00000535766		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000535766	ENST00000485886		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000485886	ENST00000545391		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-3UTR	ENST00000485886	ENST00000361171		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000485886	ENST00000436593		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-intron	ENST00000485886	ENST00000535766		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
3UTR-3UTR	ENST00000485886	ENST00000485886		ChiTaRS3.1			BE832956	MVB12B	chr9	129268332	-	MVB12B	chr9	129268169	+
intron-3UTR	ENST00000252577	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000252577	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000360315	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000360315	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000537887	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000537887	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000404158	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000404158	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000358713	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000358713	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000429563	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000429563	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-3UTR	ENST00000473184	ENST00000301011		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
intron-intron	ENST00000473184	ENST00000452588		ChiTaRS3.1			AW935086	GATAD2A	chr19	19547192	-	ZC3H18	chr16	88698063	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BE767916	MALAT1	chr11	65271221	-	MALAT1	chr11	65271056	+
5CDS-intron	ENST00000348520	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000380038	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000389744	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000557575	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000553286	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000347839	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000555836	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000334553	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000246489	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000557450	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000554280	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000452929	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
5CDS-intron	ENST00000445352	ENST00000369219		ChiTaRS3.1			AA410206	KLC1	chr14	104121062	+	NBPF14	chr1	145072166	-
intron-intron	ENST00000368679	ENST00000337959		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368679	ENST00000263246		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368679	ENST00000407585		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368679	ENST00000403744		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368679	ENST00000402229		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368676	ENST00000337959		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368676	ENST00000263246		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368676	ENST00000407585		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368676	ENST00000403744		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000368676	ENST00000402229		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000467145	ENST00000337959		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000467145	ENST00000263246		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000467145	ENST00000407585		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000467145	ENST00000403744		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000467145	ENST00000402229		ChiTaRS3.1			BG002846	ADAM12	chr10	127774926	+	PACSIN2	chr22	43404557	+
intron-intron	ENST00000473039	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000473039	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373624	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000542603	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394219	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373620	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000394215	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000473039		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000373624		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000542603		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000394219		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000373620		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000394215		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-intron	ENST00000373618	ENST00000373618		ChiTaRS3.1			BI053116	DENND1A	chr9	126284700	+	DENND1A	chr9	126284549	-
intron-3CDS	ENST00000458244	ENST00000368738		ChiTaRS3.1			DB325356	KRT4	chr12	53200693	+	S100A9	chr1	153333215	-
intron-3CDS	ENST00000293774	ENST00000368738		ChiTaRS3.1			DB325356	KRT4	chr12	53200693	+	S100A9	chr1	153333215	-
intron-3CDS	ENST00000551956	ENST00000368738		ChiTaRS3.1			DB325356	KRT4	chr12	53200693	+	S100A9	chr1	153333215	-
intron-intron	ENST00000406028	ENST00000389462		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000406028	ENST00000309083		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000406028	ENST00000538057		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-intron	ENST00000403084	ENST00000389462		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000403084	ENST00000309083		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000403084	ENST00000538057		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-intron	ENST00000413119	ENST00000389462		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000413119	ENST00000309083		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3UTR	ENST00000413119	ENST00000538057		ChiTaRS3.1			BM986976	CLDN5	chr22	19510838	+	PTMS	chr12	6880050	+
intron-3CDS	ENST00000359486	ENST00000359486		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000335626		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000404876		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000359486		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000335626		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000404876		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000359486		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000335626		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000404876		ChiTaRS3.1			AW134986	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
3UTR-intron	ENST00000303305	ENST00000342505		ChiTaRS3.1			CV396726	PA2G4	chr12	56507469	-	JAK1	chr1	65362875	-
3UTR-intron	ENST00000303305	ENST00000465376		ChiTaRS3.1			CV396726	PA2G4	chr12	56507469	-	JAK1	chr1	65362875	-
intron-intron	ENST00000552766	ENST00000342505		ChiTaRS3.1			CV396726	PA2G4	chr12	56507469	-	JAK1	chr1	65362875	-
intron-intron	ENST00000552766	ENST00000465376		ChiTaRS3.1			CV396726	PA2G4	chr12	56507469	-	JAK1	chr1	65362875	-
intron-3CDS	ENST00000589037	ENST00000222145		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000589037	ENST00000594232		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000253788	ENST00000222145		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000253788	ENST00000594232		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-3CDS	ENST00000589913	ENST00000222145		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
5UTR-intron	ENST00000589913	ENST00000594232		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000590864	ENST00000222145		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-intron	ENST00000590864	ENST00000594232		ChiTaRS3.1			CV327306	RPL27	chr17	41150760	-	RASIP1	chr19	49228152	+
intron-3CDS	ENST00000262746	ENST00000262746		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000262746	ENST00000319248		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-intron	ENST00000262746	ENST00000372079		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-5UTR	ENST00000262746	ENST00000483583		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000319248	ENST00000262746		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000319248	ENST00000319248		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-intron	ENST00000319248	ENST00000372079		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-5UTR	ENST00000319248	ENST00000483583		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000372079	ENST00000262746		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000372079	ENST00000319248		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-intron	ENST00000372079	ENST00000372079		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-5UTR	ENST00000372079	ENST00000483583		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000483583	ENST00000262746		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-3CDS	ENST00000483583	ENST00000319248		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-intron	ENST00000483583	ENST00000372079		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
intron-5UTR	ENST00000483583	ENST00000483583		ChiTaRS3.1			CN267646	PRDX1	chr1	45980245	+	PRDX1	chr1	45981431	-
In-frame	ENST00000376929	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000376929	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000376929	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
intron-3CDS	ENST00000506690	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
intron-intron	ENST00000506690	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
intron-intron	ENST00000506690	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
In-frame	ENST00000389805	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000389805	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000389805	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
In-frame	ENST00000402874	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000402874	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000402874	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
In-frame	ENST00000510187	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000510187	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000510187	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
In-frame	ENST00000360718	ENST00000389048		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000360718	ENST00000431873		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000360718	ENST00000498037		ChiTaRS3.1			AB583922	SQSTM1	chr5	179252226	+	ALK	chr2	29446395	-
3UTR-3UTR	ENST00000396441	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000396441	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000396441	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389707	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000389707	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000401424	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000401424	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000389708	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000389708	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000361003	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000361003	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403290	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000403290	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403510	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000403510	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-3UTR	ENST00000403482	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
3UTR-intron	ENST00000403482	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000396441		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000389707		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000401424		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000389708		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000361003		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000403290		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000403510		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-3UTR	ENST00000497429	ENST00000403482		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
intron-intron	ENST00000497429	ENST00000497429		ChiTaRS3.1			CA310696	ARNTL	chr11	13408512	-	ARNTL	chr11	13408336	+
In-frame	ENST00000354185	ENST00000354185		ChiTaRS3.1			AA133576	DDX21	chr10	70726950	+	DDX21	chr10	70726845	-
intron-3CDS	ENST00000298248	ENST00000263346		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3UTR	ENST00000298248	ENST00000563406		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-intron	ENST00000298248	ENST00000263347		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3CDS	ENST00000382812	ENST00000263346		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3UTR	ENST00000382812	ENST00000563406		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-intron	ENST00000382812	ENST00000263347		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3CDS	ENST00000480748	ENST00000263346		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3UTR	ENST00000480748	ENST00000563406		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-intron	ENST00000480748	ENST00000263347		ChiTaRS3.1			AW391896	CRYL1	chr13	21045258	-	TCF25	chr16	89949801	-
intron-3CDS	ENST00000262316	ENST00000262316		ChiTaRS3.1			AI907156	RHBDF1	chr16	112376	+	RHBDF1	chr16	113613	-
intron-3CDS	ENST00000262316	ENST00000454039		ChiTaRS3.1			AI907156	RHBDF1	chr16	112376	+	RHBDF1	chr16	113613	-
intron-3CDS	ENST00000454039	ENST00000262316		ChiTaRS3.1			AI907156	RHBDF1	chr16	112376	+	RHBDF1	chr16	113613	-
intron-3CDS	ENST00000454039	ENST00000454039		ChiTaRS3.1			AI907156	RHBDF1	chr16	112376	+	RHBDF1	chr16	113613	-
intron-3CDS	ENST00000333430	ENST00000333430		ChiTaRS3.1			BP193336	S1PR5	chr19	10625029	-	S1PR5	chr19	10625427	-
intron-3CDS	ENST00000333430	ENST00000439028		ChiTaRS3.1			BP193336	S1PR5	chr19	10625029	-	S1PR5	chr19	10625427	-
intron-3CDS	ENST00000439028	ENST00000333430		ChiTaRS3.1			BP193336	S1PR5	chr19	10625029	-	S1PR5	chr19	10625427	-
intron-3CDS	ENST00000439028	ENST00000439028		ChiTaRS3.1			BP193336	S1PR5	chr19	10625029	-	S1PR5	chr19	10625427	-
intron-3UTR	ENST00000355832	ENST00000367607		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-intron	ENST00000355832	ENST00000490141		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-3UTR	ENST00000542458	ENST00000367607		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-intron	ENST00000542458	ENST00000490141		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-3UTR	ENST00000465653	ENST00000367607		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-intron	ENST00000465653	ENST00000490141		ChiTaRS3.1			BF094116	ERCC6	chr10	50678306	+	CEP350	chr1	180081105	-
intron-intron	ENST00000525560	ENST00000525560		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000525560	ENST00000344954		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000525560	ENST00000527786		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000525560	ENST00000534087		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000525560	ENST00000281428		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000344954	ENST00000525560		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000344954	ENST00000344954		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000344954	ENST00000527786		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000344954	ENST00000534087		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000344954	ENST00000281428		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000527786	ENST00000525560		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000527786	ENST00000344954		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000527786	ENST00000527786		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000527786	ENST00000534087		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000527786	ENST00000281428		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000534087	ENST00000525560		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000534087	ENST00000344954		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000534087	ENST00000527786		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000534087	ENST00000534087		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000534087	ENST00000281428		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000281428	ENST00000525560		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000281428	ENST00000344954		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000281428	ENST00000527786		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000281428	ENST00000534087		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-intron	ENST00000281428	ENST00000281428		ChiTaRS3.1			BM720416	FLI1	chr11	128591097	+	FLI1	chr11	128590408	+
intron-3CDS	ENST00000565749	ENST00000344691		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000565749	ENST00000325074		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000565749	ENST00000437180		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000565749	ENST00000300305		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000565749	ENST00000399240		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000565749	ENST00000486278		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000565749	ENST00000494829		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000565749	ENST00000358356		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000344691		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000325074		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000437180		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000300305		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000399240		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000442925	ENST00000486278		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000442925	ENST00000494829		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000442925	ENST00000358356		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000344691		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000325074		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000437180		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000300305		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000399240		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000422265	ENST00000486278		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000422265	ENST00000494829		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000422265	ENST00000358356		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000344691		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000325074		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000437180		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000300305		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000399240		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-3CDS	ENST00000273145	ENST00000486278		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000273145	ENST00000494829		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
intron-intron	ENST00000273145	ENST00000358356		ChiTaRS3.1			DB320986	ACKR2	chr17	40831967	-	RUNX1	chr21	36259343	+
5CDS-intron	ENST00000361417	ENST00000598810		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000593945		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000601519		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000311227		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000377214		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000539846		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000361417	ENST00000598397		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000598810		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000593945		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000601519		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000311227		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000377214		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000539846		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
5CDS-intron	ENST00000356063	ENST00000598397		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000598810		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000593945		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000601519		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000311227		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000377214		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000539846		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000534672	ENST00000598397		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000598810		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000593945		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000601519		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000311227		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000377214		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000539846		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000527898	ENST00000598397		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000598810		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000593945		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000601519		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000311227		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000377214		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000539846		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
intron-intron	ENST00000524713	ENST00000598397		ChiTaRS3.1			BG983176	PHLDB1	chr11	118498210	+	TEAD2	chr19	49845951	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BU784876	MALAT1	chr11	65267066	-	MALAT1	chr11	65269637	-
intron-3UTR	ENST00000397063	ENST00000267085		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397063	ENST00000379843		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397063	ENST00000379846		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397063	ENST00000444623		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397063	ENST00000453446		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397063	ENST00000542115		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397063	ENST00000491654		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397062	ENST00000267085		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397062	ENST00000379843		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397062	ENST00000379846		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000397062	ENST00000444623		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397062	ENST00000453446		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397062	ENST00000542115		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000397062	ENST00000491654		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000446151	ENST00000267085		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000446151	ENST00000379843		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000446151	ENST00000379846		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000446151	ENST00000444623		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000446151	ENST00000453446		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000446151	ENST00000542115		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000446151	ENST00000491654		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000464747	ENST00000267085		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000464747	ENST00000379843		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000464747	ENST00000379846		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000464747	ENST00000444623		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000464747	ENST00000453446		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000464747	ENST00000542115		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000464747	ENST00000491654		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000423513	ENST00000267085		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000423513	ENST00000379843		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000423513	ENST00000379846		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3UTR	ENST00000423513	ENST00000444623		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000423513	ENST00000453446		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000423513	ENST00000542115		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-intron	ENST00000423513	ENST00000491654		ChiTaRS3.1			AI032646	NFE2L2	chr2	178112110	+	CSAD	chr12	53552222	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911176	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911176	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911176	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911176	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3UTR	ENST00000360239	ENST00000360239		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000360239	ENST00000326495		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000360239	ENST00000551165		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000360239	ENST00000326470		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000360239	ENST00000546812		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000326495	ENST00000360239		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000326495	ENST00000326495		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326495	ENST00000551165		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326495	ENST00000326470		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326495	ENST00000546812		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000551165	ENST00000360239		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000551165	ENST00000326495		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000551165	ENST00000551165		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000551165	ENST00000326470		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000551165	ENST00000546812		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000326470	ENST00000360239		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000326470	ENST00000326495		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326470	ENST00000551165		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326470	ENST00000326470		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000326470	ENST00000546812		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000546812	ENST00000360239		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-3UTR	ENST00000546812	ENST00000326495		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000546812	ENST00000551165		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000546812	ENST00000326470		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000546812	ENST00000546812		ChiTaRS3.1			AA480626	SSH1	chr12	109177221	-	SSH1	chr12	109176848	+
intron-intron	ENST00000264888	ENST00000254691		ChiTaRS3.1			AW801916	CXCL9	chr4	76924792	-	CARD6	chr5	40842770	+
intron-intron	ENST00000264888	ENST00000381677		ChiTaRS3.1			AW801916	CXCL9	chr4	76924792	-	CARD6	chr5	40842770	+
In-frame	ENST00000356239	ENST00000356239		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000358100		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000359028		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000356239	ENST00000394564		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000356239		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000358100		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000359028		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000358100	ENST00000394564		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000356239		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000358100		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000359028		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
In-frame	ENST00000359028	ENST00000394564		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
5CDS-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000356239		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000358100		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000359028		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000394564	ENST00000394564		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000356239		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000358100		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000359028		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-3CDS	ENST00000491695	ENST00000394564		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BU072746	AKAP9	chr7	91630522	+	AKAP9	chr7	91622250	+
3UTR-3CDS	ENST00000379261	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-5UTR	ENST00000379261	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000416382	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000416382	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-3CDS	ENST00000450189	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-5UTR	ENST00000450189	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000542579	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000542579	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000399850	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000399850	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000417956	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000417956	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-3CDS	ENST00000354440	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-5UTR	ENST00000354440	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-3CDS	ENST00000427450	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-5UTR	ENST00000427450	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-3CDS	ENST00000315874	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
3UTR-5UTR	ENST00000315874	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000608830	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000608830	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000609692	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000609692	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000354897	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000354897	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-3CDS	ENST00000537122	ENST00000427569		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-5UTR	ENST00000537122	ENST00000416949		ChiTaRS3.1			AI916936	CELF2	chr10	11375428	-	AARSD1	chr17	41108518	+
intron-intron	ENST00000345146	ENST00000305997		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-intron	ENST00000345146	ENST00000486484		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-intron	ENST00000446179	ENST00000305997		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-intron	ENST00000446179	ENST00000486484		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-intron	ENST00000415913	ENST00000305997		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-intron	ENST00000415913	ENST00000486484		ChiTaRS3.1			AW001546	IDH1	chr2	209101195	+	MBOAT2	chr2	9077895	+
intron-3UTR	ENST00000342228	ENST00000340533		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000342228	ENST00000494131		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000342228	ENST00000397914		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000342228	ENST00000299438		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000342228	ENST00000579064		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000340533		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000494131		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520262	ENST00000397914		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520262	ENST00000299438		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520262	ENST00000579064		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000340533		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000494131		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520179	ENST00000397914		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000520179	ENST00000299438		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000520179	ENST00000579064		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000340533		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000494131		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000523340	ENST00000397914		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-3UTR	ENST00000523340	ENST00000299438		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-intron	ENST00000523340	ENST00000579064		ChiTaRS3.1			AI207656	SLC20A2	chr8	42274318	+	CYB5A	chr18	71920674	-
intron-5UTR	ENST00000334746	ENST00000316292		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000334746	ENST00000491404		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000334746	ENST00000309268		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000334746	ENST00000331523		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000316292		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000554565	ENST00000491404		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000309268		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000554565	ENST00000331523		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000316292		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000393170	ENST00000491404		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000309268		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000393170	ENST00000331523		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000316292		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000298896	ENST00000491404		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000309268		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000298896	ENST00000331523		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000316292		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-intron	ENST00000555525	ENST00000491404		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000309268		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-5UTR	ENST00000555525	ENST00000331523		ChiTaRS3.1			BC023536	BTBD7	chr14	93708104	+	EEF1A1	chr6	74229761	-
intron-3CDS	ENST00000341846	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000341846	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000341846	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000341846	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000341846	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000341846	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3CDS	ENST00000524816	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000524816	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000524816	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000524816	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000524816	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000524816	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3CDS	ENST00000541857	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000541857	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000541857	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000541857	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000541857	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000541857	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3CDS	ENST00000525887	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000525887	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000525887	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000525887	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000525887	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000525887	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3CDS	ENST00000528870	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000528870	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000528870	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000528870	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000528870	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000528870	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3CDS	ENST00000529044	ENST00000341846		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000529044	ENST00000524816		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000529044	ENST00000541857		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000529044	ENST00000525887		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000529044	ENST00000528870		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-intron	ENST00000529044	ENST00000529044		ChiTaRS3.1			BF842536	TRIM29	chr11	119991311	-	TRIM29	chr11	119996568	+
intron-3UTR	ENST00000311669	ENST00000311669		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000311669	ENST00000456471		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000311669	ENST00000567733		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-3UTR	ENST00000456471	ENST00000311669		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000456471	ENST00000456471		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000456471	ENST00000567733		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-3UTR	ENST00000567733	ENST00000311669		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000567733	ENST00000456471		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
intron-intron	ENST00000567733	ENST00000567733		ChiTaRS3.1			BU676386	ADPGK	chr15	73043801	+	ADPGK	chr15	73043939	-
5CDS-3UTR	ENST00000246554	ENST00000558401		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000246554	ENST00000559916		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000246554	ENST00000544417		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000246554	ENST00000559220		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000592141	ENST00000558401		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000592141	ENST00000559916		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000592141	ENST00000544417		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000592141	ENST00000559220		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000392201	ENST00000558401		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000392201	ENST00000559916		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-intron	ENST00000392201	ENST00000544417		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5CDS-3UTR	ENST00000392201	ENST00000559220		ChiTaRS3.1			BU078026	COX6B1	chr19	36149541	-	B2M	chr15	45009947	-
5UTR-5UTR	ENST00000557636	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000557636	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000557636	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-5UTR	ENST00000286650	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000286650	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000286650	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-5UTR	ENST00000298832	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000298832	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000298832	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-5UTR	ENST00000556893	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000556893	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000556893	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-5UTR	ENST00000554510	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000554510	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000554510	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-5UTR	ENST00000556977	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000556977	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
5UTR-intron	ENST00000556977	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-5UTR	ENST00000555422	ENST00000263354		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000555422	ENST00000595227		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-intron	ENST00000555422	ENST00000593785		ChiTaRS3.1			BG984526	TTLL5	chr14	76127701	-	NAPA	chr19	48018293	-
intron-3UTR	ENST00000327761	ENST00000533820		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000327761	ENST00000533129		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000327761	ENST00000524773		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000327761	ENST00000279247		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000327761	ENST00000527469		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000327761	ENST00000527323		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000395126	ENST00000533820		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000395126	ENST00000533129		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000395126	ENST00000524773		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000395126	ENST00000279247		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000395126	ENST00000527469		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000395126	ENST00000527323		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000357043	ENST00000533820		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000357043	ENST00000533129		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000357043	ENST00000524773		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000357043	ENST00000279247		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000357043	ENST00000527469		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000357043	ENST00000527323		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000359365	ENST00000533820		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000359365	ENST00000533129		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000359365	ENST00000524773		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000359365	ENST00000279247		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000359365	ENST00000527469		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000359365	ENST00000527323		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000488024	ENST00000533820		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000488024	ENST00000533129		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000488024	ENST00000524773		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000488024	ENST00000279247		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000488024	ENST00000527469		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-3UTR	ENST00000488024	ENST00000527323		ChiTaRS3.1			BI013636	RASSF1	chr3	50375136	-	CAPN1	chr11	64978837	+
intron-intron	ENST00000405995	ENST00000405995		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000405995	ENST00000357304		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000405995	ENST00000458550		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000405995	ENST00000372249		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000405995	ENST00000465931		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000357304	ENST00000405995		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000357304	ENST00000357304		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000357304	ENST00000458550		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000357304	ENST00000372249		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000357304	ENST00000465931		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000458550	ENST00000405995		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000458550	ENST00000357304		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000458550	ENST00000458550		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000458550	ENST00000372249		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000458550	ENST00000465931		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000372249	ENST00000405995		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000372249	ENST00000357304		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000372249	ENST00000458550		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000372249	ENST00000372249		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000372249	ENST00000465931		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000465931	ENST00000405995		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000465931	ENST00000357304		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000465931	ENST00000458550		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000465931	ENST00000372249		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-intron	ENST00000465931	ENST00000465931		ChiTaRS3.1			BF733026	PRRC2B	chr9	134298402	+	PRRC2B	chr9	134297712	+
intron-5UTR	ENST00000393240	ENST00000383168		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000393240	ENST00000581374		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000393240	ENST00000440832		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000393240	ENST00000583022		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-5UTR	ENST00000261205	ENST00000383168		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000261205	ENST00000581374		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000261205	ENST00000440832		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000261205	ENST00000583022		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-5UTR	ENST00000457153	ENST00000383168		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000457153	ENST00000581374		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000457153	ENST00000440832		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000457153	ENST00000583022		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-5UTR	ENST00000552744	ENST00000383168		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000552744	ENST00000581374		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000552744	ENST00000440832		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000552744	ENST00000583022		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-5UTR	ENST00000549454	ENST00000383168		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000549454	ENST00000581374		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000549454	ENST00000440832		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
intron-intron	ENST00000549454	ENST00000583022		ChiTaRS3.1			U34846	SYT1	chr12	79273914	-	AQP4	chr18	24445669	-
3UTR-intron	ENST00000314133	ENST00000409979		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-3UTR	ENST00000314133	ENST00000310078		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-intron	ENST00000314133	ENST00000409315		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-intron	ENST00000314133	ENST00000373671		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-intron	ENST00000314133	ENST00000409171		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-intron	ENST00000314133	ENST00000486932		ChiTaRS3.1			AA292136	COX8A	chr11	63743917	-	AGFG1	chr2	228424087	+
3UTR-3CDS	ENST00000452533	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000452533	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000553257	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000553257	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000549701	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000549701	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-3CDS	ENST00000358214	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000358214	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000548671	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000548671	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000266481	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000266481	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000547312	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000547312	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-3CDS	ENST00000414834	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000414834	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-3CDS	ENST00000381000	ENST00000491306		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000600880		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000446558		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000456586		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000598925		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000427280		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
3UTR-intron	ENST00000381000	ENST00000441179		ChiTaRS3.1			BC000136	DNM1L	chr12	32897354	+	RPL37A	chr2	217366103	+
intron-intron	ENST00000604938	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401010	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000339388	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000369323	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000605317	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000479926	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000604894	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-intron	ENST00000401009	ENST00000369219		ChiTaRS3.1			BC046646	NBPF11	chr1	147931723	-	NBPF14	chr1	145004781	+
intron-3CDS	ENST00000332830	ENST00000332830		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000332830	ENST00000577226		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000332830	ENST00000268756		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-5UTR	ENST00000332830	ENST00000582655		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000577226	ENST00000332830		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000577226	ENST00000577226		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000577226	ENST00000268756		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-5UTR	ENST00000577226	ENST00000582655		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000268756	ENST00000332830		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000268756	ENST00000577226		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000268756	ENST00000268756		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-5UTR	ENST00000268756	ENST00000582655		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000582655	ENST00000332830		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000582655	ENST00000577226		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000582655	ENST00000268756		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-5UTR	ENST00000582655	ENST00000582655		ChiTaRS3.1			BF823276	PHF12	chr17	27239993	+	PHF12	chr17	27240095	-
intron-3CDS	ENST00000497424	ENST00000338432		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000497424	ENST00000377854		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000497424	ENST00000377848		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000497424	ENST00000543080		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000497424	ENST00000543201		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000316562	ENST00000338432		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000316562	ENST00000377854		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000316562	ENST00000377848		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000316562	ENST00000543080		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000316562	ENST00000543201		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000610179	ENST00000338432		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000610179	ENST00000377854		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000610179	ENST00000377848		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000610179	ENST00000543080		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000610179	ENST00000543201		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000464452	ENST00000338432		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000464452	ENST00000377854		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-3CDS	ENST00000464452	ENST00000377848		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000464452	ENST00000543080		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000464452	ENST00000543201		ChiTaRS3.1			BF375856	PANK2	chr20	3873479	-	ACACB	chr12	109625921	+
intron-intron	ENST00000260327	ENST00000260327		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000396780		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558966		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000558373		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000260327	ENST00000561189		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000260327		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000396780		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558966		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000558373		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000396780	ENST00000561189		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000260327		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000396780		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558966		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000558373		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558966	ENST00000561189		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000260327		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000396780		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558966		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000558373		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000558373	ENST00000561189		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000260327		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000396780		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558966		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000558373		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
intron-intron	ENST00000561189	ENST00000561189		ChiTaRS3.1			AA007396	CTDSPL2	chr15	44724200	-	CTDSPL2	chr15	44730137	-
3UTR-3UTR	ENST00000262238	ENST00000262238		ChiTaRS3.1			CB410366	YY1	chr14	100747924	-	YY1	chr14	100748026	+
intron-intron	ENST00000372447	ENST00000370951		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000405432		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370950		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000454435		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000436161		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000484162		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000372447	ENST00000370949		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370951		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000405432		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370950		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000454435		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000436161		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000484162		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-intron	ENST00000461762	ENST00000370949		ChiTaRS3.1			AI917006	C9orf78	chr9	132590057	+	SRSF11	chr1	70714667	-
intron-3CDS	ENST00000237654	ENST00000217131		ChiTaRS3.1			AF032906	CCNI	chr4	77997136	+	CTSZ	chr20	57582302	-
intron-3CDS	ENST00000537948	ENST00000217131		ChiTaRS3.1			AF032906	CCNI	chr4	77997136	+	CTSZ	chr20	57582302	-
intron-3CDS	ENST00000504697	ENST00000217131		ChiTaRS3.1			AF032906	CCNI	chr4	77997136	+	CTSZ	chr20	57582302	-
intron-intron	ENST00000396153	ENST00000330430		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000371374		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000306764		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000405162		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000330430		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000371374		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000306764		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000405162		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000330430		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000371374		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000306764		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000405162		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000330430		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000371374		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000306764		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000405162		ChiTaRS3.1			CV391116	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-3UTR	ENST00000265909	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000265909	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000265909	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000265909	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000265909	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000265909	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000265909	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000534726	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000534726	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000534726	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000534726	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000534726	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000534726	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000534726	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000545537	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000545537	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000545537	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000545537	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000545537	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000545537	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000545537	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000426933	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000426933	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000426933	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000426933	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000426933	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000426933	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000426933	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533318	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533318	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533318	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533318	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533318	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533318	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533318	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000530356	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000530356	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000530356	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000530356	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000530356	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000530356	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000530356	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000539184	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000539184	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000539184	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000539184	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000539184	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000539184	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000539184	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000528555	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000528555	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000528555	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000528555	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000528555	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000528555	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000528555	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533214	ENST00000372045		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533214	ENST00000218054		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000533214	ENST00000434224		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533214	ENST00000394797		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533214	ENST00000372042		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533214	ENST00000482160		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-intron	ENST00000533214	ENST00000444321		ChiTaRS3.1			AA029156	SNX19	chr11	130780046	-	CHRDL1	chrX	109917723	-
intron-3UTR	ENST00000369026	ENST00000369026		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000369026	ENST00000464132		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000369026	ENST00000307940		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-3UTR	ENST00000464132	ENST00000369026		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000464132	ENST00000464132		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000464132	ENST00000307940		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-3UTR	ENST00000307940	ENST00000369026		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000307940	ENST00000464132		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000307940	ENST00000307940		ChiTaRS3.1			AW019996	MCL1	chr1	150547280	+	MCL1	chr1	150547234	-
intron-intron	ENST00000355621	ENST00000550418		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000553186		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000547372		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000422070		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000535565		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000547427		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000552089		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000547338		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000436368		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000311745		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000355637		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000355621	ENST00000340209		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000550418		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000553186		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000547372		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000422070		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000535565		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000547427		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000552089		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000547338		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000436368		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000311745		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000355637		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000473814	ENST00000340209		ChiTaRS3.1			CD653316	UBE2H	chr7	129535163	-	RBFOX1	chr16	6176974	+
intron-intron	ENST00000218089	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000218089	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000469481	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000354548	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371160	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371157	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371145	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000218089		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000469481		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000354548		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371160		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371157		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371145		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
intron-intron	ENST00000371144	ENST00000371144		ChiTaRS3.1			BE072226	STAG2	chrX	123105508	-	STAG2	chrX	123104349	+
5CDS-5UTR	ENST00000238571	ENST00000535454		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-5UTR	ENST00000238571	ENST00000542674		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-intron	ENST00000238571	ENST00000286482		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-intron	ENST00000238571	ENST00000493910		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-5UTR	ENST00000325680	ENST00000535454		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-5UTR	ENST00000325680	ENST00000542674		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-intron	ENST00000325680	ENST00000286482		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-intron	ENST00000325680	ENST00000493910		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-5UTR	ENST00000552421	ENST00000535454		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-5UTR	ENST00000552421	ENST00000542674		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-intron	ENST00000552421	ENST00000286482		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-intron	ENST00000552421	ENST00000493910		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-5UTR	ENST00000546901	ENST00000535454		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-5UTR	ENST00000546901	ENST00000542674		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-intron	ENST00000546901	ENST00000286482		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
intron-intron	ENST00000546901	ENST00000493910		ChiTaRS3.1			DA831846	YLPM1	chr14	75264461	+	MAGEA8	chrX	149009985	+
5CDS-intron	ENST00000341547	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000341547	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000341547	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000341547	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000341547	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000357063	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000357063	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000357063	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000357063	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000357063	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000377534	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000377534	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000377534	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000377534	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000377534	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000321797	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000321797	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000321797	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000321797	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000321797	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000526202	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000526202	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000526202	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000526202	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000526202	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000465261	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000465261	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000465261	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-5UTR	ENST00000465261	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
5CDS-intron	ENST00000465261	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-intron	ENST00000605961	ENST00000465259		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-intron	ENST00000605961	ENST00000310053		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-intron	ENST00000605961	ENST00000392912		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-5UTR	ENST00000605961	ENST00000494055		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-intron	ENST00000605961	ENST00000481663		ChiTaRS3.1			Z46606	LMO7	chr13	76423309	-	HLTF	chr3	148804317	-
intron-intron	ENST00000177742	ENST00000338368		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-intron	ENST00000177742	ENST00000314191		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-intron	ENST00000177742	ENST00000523565		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-intron	ENST00000397375	ENST00000338368		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-intron	ENST00000397375	ENST00000314191		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-intron	ENST00000397375	ENST00000523565		ChiTaRS3.1			AI634126	MRPS34	chr16	1822023	-	PRKDC	chr8	48685673	+
intron-5UTR	ENST00000346693	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000346693	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000346693	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000346693	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000346693	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000346693	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-5UTR	ENST00000370377	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000370377	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000370377	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000370377	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000370377	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000370377	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-5UTR	ENST00000355149	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000355149	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000355149	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000355149	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000355149	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000355149	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-5UTR	ENST00000437787	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000437787	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000437787	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000437787	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000437787	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000437787	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-5UTR	ENST00000466436	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000466436	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000466436	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000466436	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000466436	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000466436	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-5UTR	ENST00000320893	ENST00000346693		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000320893	ENST00000370377		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000320893	ENST00000355149		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-3UTR	ENST00000320893	ENST00000437787		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000320893	ENST00000466436		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000320893	ENST00000320893		ChiTaRS3.1			BG252856	CD99L2	chrX	149935297	+	CD99L2	chrX	149935229	-
intron-intron	ENST00000371657	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371657	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371657	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000396059	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000396059	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000396059	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371674	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371674	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371674	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371677	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371677	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000371677	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000340309	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000340309	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000340309	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000420027	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000420027	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000420027	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000415862	ENST00000304786		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000415862	ENST00000366839		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
intron-intron	ENST00000415862	ENST00000366838		ChiTaRS3.1			AW361026	UBE2V1	chr20	48698765	-	SRP9	chr1	225973991	-
3UTR-intron	ENST00000261267	ENST00000370801		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
3UTR-intron	ENST00000261267	ENST00000370798		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
3UTR-intron	ENST00000261267	ENST00000476275		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000549690	ENST00000370801		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000549690	ENST00000370798		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000549690	ENST00000476275		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000548839	ENST00000370801		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000548839	ENST00000370798		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
intron-intron	ENST00000548839	ENST00000476275		ChiTaRS3.1			BE042786	LYZ	chr12	69747488	-	ZZZ3	chr1	78036110	+
5CDS-intron	ENST00000250784	ENST00000591142		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-3UTR	ENST00000250784	ENST00000591601		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-intron	ENST00000250784	ENST00000309340		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-3UTR	ENST00000250784	ENST00000250896		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-intron	ENST00000250784	ENST00000541165		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-intron	ENST00000250784	ENST00000591588		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-intron	ENST00000250784	ENST00000588014		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-intron	ENST00000477725	ENST00000591142		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-3UTR	ENST00000477725	ENST00000591601		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-intron	ENST00000477725	ENST00000309340		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-3UTR	ENST00000477725	ENST00000250896		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-intron	ENST00000477725	ENST00000541165		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-intron	ENST00000477725	ENST00000591588		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
3UTR-intron	ENST00000477725	ENST00000588014		ChiTaRS3.1			BQ351516	RPS4Y1	chrY	2733263	+	MKNK2	chr19	2037878	+
5CDS-intron	ENST00000348697	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
5CDS-intron	ENST00000402984	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
5CDS-intron	ENST00000262722	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
5CDS-intron	ENST00000327858	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
5CDS-intron	ENST00000442170	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
5CDS-intron	ENST00000340923	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
intron-intron	ENST00000476366	ENST00000390168		ChiTaRS3.1			BG005486	FBLN1	chr22	45944585	-	H19	chr11	2016807	+
3UTR-intron	ENST00000513024	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000513024	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000513024	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000513024	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000513024	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509638	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509638	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509638	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509638	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000508501	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000508501	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000508501	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000508501	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512946	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512946	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512946	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512946	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000313860	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000313860	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000313860	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000313860	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512632	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512632	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512632	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512632	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512820	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512820	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000512820	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000512820	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000503057	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000503057	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000503057	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000503057	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000511496	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000511496	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000511496	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000511496	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000514096	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000514096	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000514096	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000514096	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509277	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509277	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509277	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509277	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000396595	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000396595	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000396595	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000396595	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000381753	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000381753	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-3UTR	ENST00000381753	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
3UTR-intron	ENST00000381753	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509454	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509454	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000509454	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000509454	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000513024		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000509638		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000508501		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000512946		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000515785	ENST00000313860		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000512632		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000512820		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000503057		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000511496		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000514096		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000509277		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000515785	ENST00000396595		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-3UTR	ENST00000515785	ENST00000381753		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000509454		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000515785	ENST00000515785		ChiTaRS3.1			BU675776	LIMCH1	chr4	41700910	-	LIMCH1	chr4	41701411	+
intron-intron	ENST00000385130	ENST00000330978		ChiTaRS3.1			BI013096	MIR34A	chr1	9227880	-	BOLA2	chr16	30005986	-
intron-3CDS	ENST00000598205	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000598205	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000376970	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000425460	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000440075	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000601313	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
3UTR-3CDS	ENST00000262269	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000598205		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000376970		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000425460		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000440075		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000601313		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000262269		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000596571	ENST00000596571		ChiTaRS3.1			BG984016	MYH14	chr19	50813312	+	MYH14	chr19	50794235	+
intron-3CDS	ENST00000225655	ENST00000238788		ChiTaRS3.1			BQ361296	PFN1	chr17	4849986	+	TMEM214	chr2	27262651	-
intron-3CDS	ENST00000225655	ENST00000404032		ChiTaRS3.1			BQ361296	PFN1	chr17	4849986	+	TMEM214	chr2	27262651	-
intron-3CDS	ENST00000574872	ENST00000238788		ChiTaRS3.1			BQ361296	PFN1	chr17	4849986	+	TMEM214	chr2	27262651	-
intron-3CDS	ENST00000574872	ENST00000404032		ChiTaRS3.1			BQ361296	PFN1	chr17	4849986	+	TMEM214	chr2	27262651	-
3UTR-3UTR	ENST00000302313	ENST00000302313		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-intron	ENST00000302313	ENST00000418020		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000302313	ENST00000544962		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000302313	ENST00000396258		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000302313	ENST00000466405		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
intron-3UTR	ENST00000418020	ENST00000302313		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
intron-intron	ENST00000418020	ENST00000418020		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
intron-3UTR	ENST00000418020	ENST00000544962		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
intron-3UTR	ENST00000418020	ENST00000396258		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
intron-3UTR	ENST00000418020	ENST00000466405		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000544962	ENST00000302313		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-intron	ENST00000544962	ENST00000418020		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000544962	ENST00000544962		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000544962	ENST00000396258		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000544962	ENST00000466405		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000396258	ENST00000302313		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-intron	ENST00000396258	ENST00000418020		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000396258	ENST00000544962		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000396258	ENST00000396258		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000396258	ENST00000466405		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000466405	ENST00000302313		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-intron	ENST00000466405	ENST00000418020		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000466405	ENST00000544962		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000466405	ENST00000396258		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
3UTR-3UTR	ENST00000466405	ENST00000466405		ChiTaRS3.1			BU675916	WDR48	chr3	39137401	-	WDR48	chr3	39137316	+
5CDS-intron	ENST00000308664	ENST00000308664		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-3UTR	ENST00000308664	ENST00000395494		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000308664	ENST00000539276		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000308664	ENST00000550248		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000308664	ENST00000552636		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000395494	ENST00000308664		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-3UTR	ENST00000395494	ENST00000395494		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000395494	ENST00000539276		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000395494	ENST00000550248		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000395494	ENST00000552636		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000539276	ENST00000308664		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-3UTR	ENST00000539276	ENST00000395494		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000539276	ENST00000539276		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000539276	ENST00000550248		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
5CDS-intron	ENST00000539276	ENST00000552636		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000550248	ENST00000308664		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-3UTR	ENST00000550248	ENST00000395494		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000550248	ENST00000539276		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000550248	ENST00000550248		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000550248	ENST00000552636		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000552636	ENST00000308664		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-3UTR	ENST00000552636	ENST00000395494		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000552636	ENST00000539276		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000552636	ENST00000550248		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-intron	ENST00000552636	ENST00000552636		ChiTaRS3.1			BF673146	ATP2A2	chr12	110783892	-	ATP2A2	chr12	110787709	+
intron-3CDS	ENST00000583129	ENST00000361924		ChiTaRS3.1			BF436416	MIR548O2	chr8	30105495	+	GOLGA4	chr3	37370004	-
intron-intron	ENST00000583129	ENST00000435830		ChiTaRS3.1			BF436416	MIR548O2	chr8	30105495	+	GOLGA4	chr3	37370004	-
intron-intron	ENST00000583129	ENST00000444882		ChiTaRS3.1			BF436416	MIR548O2	chr8	30105495	+	GOLGA4	chr3	37370004	-
intron-intron	ENST00000583129	ENST00000356847		ChiTaRS3.1			BF436416	MIR548O2	chr8	30105495	+	GOLGA4	chr3	37370004	-
intron-3UTR	ENST00000262525	ENST00000265062		ChiTaRS3.1			BE855536	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-3UTR	ENST00000262525	ENST00000482525		ChiTaRS3.1			BE855536	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-3UTR	ENST00000262525	ENST00000485280		ChiTaRS3.1			BE855536	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-3CDS	ENST00000375446	ENST00000389749		ChiTaRS3.1			AA429416	NINJ1	chr9	95883840	+	TRMT61A	chr14	103999142	-
intron-3CDS	ENST00000489274	ENST00000389749		ChiTaRS3.1			AA429416	NINJ1	chr9	95883840	+	TRMT61A	chr14	103999142	-
intron-5UTR	ENST00000263918	ENST00000368830		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-5UTR	ENST00000263918	ENST00000467306		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-intron	ENST00000263918	ENST00000368829		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-5UTR	ENST00000379213	ENST00000368830		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-5UTR	ENST00000379213	ENST00000467306		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-intron	ENST00000379213	ENST00000368829		ChiTaRS3.1			BM837406	STRN	chr2	37072134	-	MRPL9	chr1	151735972	-
intron-intron	ENST00000518347	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518347	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518347	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518347	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518347	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518347	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000424248	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000262585	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000519811	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000518806	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000518347		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000424248		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000262585		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000519811		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000518806		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-intron	ENST00000523308	ENST00000523308		ChiTaRS3.1			AA449866	DENND3	chr8	142203974	+	DENND3	chr8	142202644	+
intron-3CDS	ENST00000549115	ENST00000264639		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000549115	ENST00000541736		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000607599	ENST00000264639		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000607599	ENST00000541736		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000548752	ENST00000264639		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000548752	ENST00000541736		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000359118	ENST00000264639		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000359118	ENST00000541736		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000552002	ENST00000264639		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-3CDS	ENST00000552002	ENST00000541736		ChiTaRS3.1			AW376286	CHURC1	chr14	65406426	+	PSMD3	chr17	38146136	-
intron-intron	ENST00000555917	ENST00000555917		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000555917	ENST00000361956		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000555917	ENST00000381280		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000361956	ENST00000555917		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000361956	ENST00000361956		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000361956	ENST00000381280		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000381280	ENST00000555917		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000381280	ENST00000361956		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-intron	ENST00000381280	ENST00000381280		ChiTaRS3.1			BF955356	SMOC1	chr14	70470824	+	SMOC1	chr14	70470782	-
intron-3UTR	ENST00000346178	ENST00000346178		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000346178	ENST00000356638		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000346178	ENST00000534779		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000346178	ENST00000540933		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000346178	ENST00000534422		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000356638	ENST00000346178		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000356638	ENST00000356638		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000356638	ENST00000534779		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000356638	ENST00000540933		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000356638	ENST00000534422		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000534779	ENST00000346178		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000534779	ENST00000356638		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534779	ENST00000534779		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534779	ENST00000540933		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534779	ENST00000534422		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000540933	ENST00000346178		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000540933	ENST00000356638		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000540933	ENST00000534779		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000540933	ENST00000540933		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000540933	ENST00000534422		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000534422	ENST00000346178		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-3UTR	ENST00000534422	ENST00000356638		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534422	ENST00000534779		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534422	ENST00000540933		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000534422	ENST00000534422		ChiTaRS3.1			BE710656	GANAB	chr11	62392861	+	GANAB	chr11	62393141	-
intron-intron	ENST00000393386	ENST00000587625		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000393386	ENST00000247970		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000393386	ENST00000588695		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000393386	ENST00000380889		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000449182	ENST00000587625		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000449182	ENST00000247970		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000449182	ENST00000588695		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000449182	ENST00000380889		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000483028	ENST00000587625		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000483028	ENST00000247970		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000483028	ENST00000588695		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-intron	ENST00000483028	ENST00000380889		ChiTaRS3.1			AA442546	PTPRZ1	chr7	121538065	-	PIN1	chr19	9948823	+
intron-5UTR	ENST00000372842	ENST00000372842		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372842	ENST00000372838		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372842	ENST00000493788		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372842		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000372838	ENST00000372838		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000372838	ENST00000493788		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372842		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-5UTR	ENST00000493788	ENST00000372838		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000493788	ENST00000493788		ChiTaRS3.1			BU174826	CERCAM	chr9	131186903	+	CERCAM	chr9	131185146	+
intron-intron	ENST00000288235	ENST00000310441		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000288235	ENST00000369984		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000288235	ENST00000354233		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000288235	ENST00000461098		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000558814	ENST00000310441		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000558814	ENST00000369984		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000558814	ENST00000354233		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
intron-intron	ENST00000558814	ENST00000461098		ChiTaRS3.1			BF835836	MYO1E	chr15	59445873	+	HCFC1	chrX	153229873	+
3UTR-3CDS	ENST00000488633	ENST00000265593		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-3CDS	ENST00000488633	ENST00000344937		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-5UTR	ENST00000488633	ENST00000423355		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-intron	ENST00000488633	ENST00000434054		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-intron	ENST00000488633	ENST00000457512		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-intron	ENST00000488633	ENST00000475279		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-3CDS	ENST00000469320	ENST00000265593		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-3CDS	ENST00000469320	ENST00000344937		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-5UTR	ENST00000469320	ENST00000423355		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-intron	ENST00000469320	ENST00000434054		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-intron	ENST00000469320	ENST00000457512		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
intron-intron	ENST00000469320	ENST00000475279		ChiTaRS3.1			AA451826	CIAO1	chr2	96937163	-	CLCN2	chr3	184076564	+
3UTR-intron	ENST00000347136	ENST00000409068		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000347136	ENST00000409085		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-3UTR	ENST00000347136	ENST00000406297		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000347136	ENST00000470281		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372406	ENST00000409068		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372406	ENST00000409085		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-3UTR	ENST00000372406	ENST00000406297		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372406	ENST00000470281		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372410	ENST00000409068		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372410	ENST00000409085		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-3UTR	ENST00000372410	ENST00000406297		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000372410	ENST00000470281		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
intron-intron	ENST00000415344	ENST00000409068		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
intron-intron	ENST00000415344	ENST00000409085		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
intron-3UTR	ENST00000415344	ENST00000406297		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
intron-intron	ENST00000415344	ENST00000470281		ChiTaRS3.1			BF934986	GPR107	chr9	132902312	-	AAK1	chr2	69708449	-
3UTR-intron	ENST00000254722	ENST00000395339		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000374882		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000374881		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000446855		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000455660		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000436627		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000457261		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000447073		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000416134		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000449883		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000446762		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000441960		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000546794		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000425784		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000429645		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000416564		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000399630		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000383236		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000383238		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000427919		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000421445		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-intron	ENST00000254722	ENST00000452573		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-3UTR	ENST00000254722	ENST00000458543		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-3UTR	ENST00000254722	ENST00000438442		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-3UTR	ENST00000254722	ENST00000435978		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000395339		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000374882		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000374881		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000446855		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000455660		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000436627		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000457261		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000447073		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000416134		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000449883		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000446762		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000441960		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000546794		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000425784		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000429645		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000416564		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000399630		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000383236		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000383238		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000427919		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000421445		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-intron	ENST00000571870	ENST00000452573		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-3UTR	ENST00000571870	ENST00000458543		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-3UTR	ENST00000571870	ENST00000438442		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
intron-3UTR	ENST00000571870	ENST00000435978		ChiTaRS3.1			AI280186	SERPINF1	chr17	1680762	-	PSMB8	chr6	4239280	+
3UTR-3CDS	ENST00000493763	ENST00000609084		ChiTaRS3.1			BC014216	RPL7L1	chr6	42855072	+	CRYBB2P1	chr22	25855943	+
intron-3CDS	ENST00000397415	ENST00000609084		ChiTaRS3.1			BC014216	RPL7L1	chr6	42855072	+	CRYBB2P1	chr22	25855943	+
3UTR-3CDS	ENST00000304734	ENST00000609084		ChiTaRS3.1			BC014216	RPL7L1	chr6	42855072	+	CRYBB2P1	chr22	25855943	+
intron-3CDS	ENST00000424341	ENST00000609084		ChiTaRS3.1			BC014216	RPL7L1	chr6	42855072	+	CRYBB2P1	chr22	25855943	+
intron-3CDS	ENST00000602561	ENST00000609084		ChiTaRS3.1			BC014216	RPL7L1	chr6	42855072	+	CRYBB2P1	chr22	25855943	+
3UTR-5UTR	ENST00000232905	ENST00000232905		ChiTaRS3.1			AA740716	EIF1B	chr3	40353585	-	EIF1B	chr3	40351390	+
intron-intron	ENST00000597652	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597652	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000596604	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597342	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597832	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000595295	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000600634	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000435989	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000597652		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000596604		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000597342		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000597832		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000595295		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000600634		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000435989		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000597807	ENST00000597807		ChiTaRS3.1			AA744506	ZNF814	chr19	58380496	+	ZNF814	chr19	58376374	+
intron-intron	ENST00000375437	ENST00000360162		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375437	ENST00000356080		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375437	ENST00000277900		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375437	ENST00000497125		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000357398	ENST00000360162		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000357398	ENST00000356080		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000357398	ENST00000277900		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000357398	ENST00000497125		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000283256	ENST00000360162		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000283256	ENST00000356080		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000283256	ENST00000277900		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000283256	ENST00000497125		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375427	ENST00000360162		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375427	ENST00000356080		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375427	ENST00000277900		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-intron	ENST00000375427	ENST00000497125		ChiTaRS3.1			BF944956	SCN2A	chr2	166185941	-	ADD3	chr10	111773642	+
intron-3CDS	ENST00000253408	ENST00000253408		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000253408	ENST00000588735		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000253408	ENST00000435360		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000253408	ENST00000586793		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-5UTR	ENST00000253408	ENST00000591327		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000588735	ENST00000253408		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000588735	ENST00000588735		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000588735	ENST00000435360		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000588735	ENST00000586793		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-5UTR	ENST00000588735	ENST00000591327		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000435360	ENST00000253408		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000435360	ENST00000588735		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000435360	ENST00000435360		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000435360	ENST00000586793		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-5UTR	ENST00000435360	ENST00000591327		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000586793	ENST00000253408		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000586793	ENST00000588735		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000586793	ENST00000435360		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000586793	ENST00000586793		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-5UTR	ENST00000586793	ENST00000591327		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000591327	ENST00000253408		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000591327	ENST00000588735		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000591327	ENST00000435360		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-3CDS	ENST00000591327	ENST00000586793		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
intron-5UTR	ENST00000591327	ENST00000591327		ChiTaRS3.1			CV326566	GFAP	chr17	42984612	+	GFAP	chr17	42992800	-
3UTR-3CDS	ENST00000374050	ENST00000374050		ChiTaRS3.1			CB852306	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
3UTR-intron	ENST00000374050	ENST00000473413		ChiTaRS3.1			CB852306	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-3CDS	ENST00000473413	ENST00000374050		ChiTaRS3.1			CB852306	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-intron	ENST00000473413	ENST00000473413		ChiTaRS3.1			CB852306	ATP6V1G1	chr9	117360191	-	ATP6V1G1	chr9	117359947	+
intron-3UTR	ENST00000400454	ENST00000395211		ChiTaRS3.1			AF131836	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-3UTR	ENST00000400454	ENST00000259365		ChiTaRS3.1			AF131836	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-intron	ENST00000400454	ENST00000375175		ChiTaRS3.1			AF131836	DSCAM	chr21	41955916	-	TMOD1	chr9	100363842	-
intron-intron	ENST00000375587	ENST00000375587		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375587	ENST00000375579		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375587	ENST00000375576		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375579	ENST00000375587		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375579	ENST00000375579		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375579	ENST00000375576		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375576	ENST00000375587		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375576	ENST00000375579		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
intron-intron	ENST00000375576	ENST00000375576		ChiTaRS3.1			BI494156	CENPP	chr9	95146355	+	CENPP	chr9	95146404	-
In-frame	ENST00000266517	ENST00000333957		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000446597		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000536386		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000396028		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000542676		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000544930		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000266517	ENST00000545552		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
5CDS-intron	ENST00000266517	ENST00000540703		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000333957		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000446597		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000536386		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000396028		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000542676		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000544930		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
In-frame	ENST00000335148	ENST00000545552		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
5CDS-intron	ENST00000335148	ENST00000540703		ChiTaRS3.1			BG386606	ETNK1	chr12	22778521	+	C2CD5	chr12	22659755	-
5CDS-intron	ENST00000442092	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000442092	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000442092	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000266022	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000266022	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000266022	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000443081	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000443081	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000443081	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000539992	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000539992	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000539992	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
intron-intron	ENST00000441115	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
intron-intron	ENST00000441115	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
intron-intron	ENST00000441115	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000422955	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000422955	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000422955	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000421682	ENST00000217130		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000421682	ENST00000450537		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
5CDS-intron	ENST00000421682	ENST00000369888		ChiTaRS3.1			BQ448366	RBM6	chr3	50114463	-	ZNF512B	chr20	62598715	+
intron-intron	ENST00000379081	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379081	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379081	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379087	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379087	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379087	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379080	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379080	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379080	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379084	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379084	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379084	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379089	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379089	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379089	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000445726	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000445726	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000445726	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000297620	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000297620	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000297620	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379078	ENST00000334187		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379078	ENST00000244070		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
intron-intron	ENST00000379078	ENST00000462333		ChiTaRS3.1			BF952326	FAM219A	chr9	34399568	-	PPP4R1L	chr20	56843292	-
5CDS-intron	ENST00000203166	ENST00000203166		ChiTaRS3.1			DN994236	HAUS5	chr19	36113888	-	HAUS5	chr19	36103662	+
5CDS-intron	ENST00000203166	ENST00000379045		ChiTaRS3.1			DN994236	HAUS5	chr19	36113888	-	HAUS5	chr19	36103662	+
3UTR-intron	ENST00000379045	ENST00000203166		ChiTaRS3.1			DN994236	HAUS5	chr19	36113888	-	HAUS5	chr19	36103662	+
3UTR-intron	ENST00000379045	ENST00000379045		ChiTaRS3.1			DN994236	HAUS5	chr19	36113888	-	HAUS5	chr19	36103662	+
3UTR-3CDS	ENST00000431679	ENST00000302451		ChiTaRS3.1			DB054606	GS1-259H13.2	chr7	99204497	+	PDILT	chr16	20410477	+
intron-3CDS	ENST00000263202	ENST00000394126		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000356271		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000394128		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000394127		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000263202	ENST00000501516		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000263202	ENST00000479829		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394126		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000356271		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394128		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000394127		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000360834	ENST00000501516		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000360834	ENST00000479829		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394126		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000356271		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394128		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000394127		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000399523	ENST00000501516		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000399523	ENST00000479829		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394126		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000356271		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394128		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000394127		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000484101	ENST00000501516		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-intron	ENST00000484101	ENST00000479829		ChiTaRS3.1			BE465526	UFD1L	chr22	19438402	+	MED24	chr17	38176561	+
intron-3CDS	ENST00000359062	ENST00000366955		ChiTaRS3.1			AF118076	PDE3A	chr12	20597267	-	CENPF	chr1	214822023	+
intron-3CDS	ENST00000359062	ENST00000467765		ChiTaRS3.1			AF118076	PDE3A	chr12	20597267	-	CENPF	chr1	214822023	+
intron-3CDS	ENST00000544307	ENST00000366955		ChiTaRS3.1			AF118076	PDE3A	chr12	20597267	-	CENPF	chr1	214822023	+
intron-3CDS	ENST00000544307	ENST00000467765		ChiTaRS3.1			AF118076	PDE3A	chr12	20597267	-	CENPF	chr1	214822023	+
Frame-shit	ENST00000379370	ENST00000379370		ChiTaRS3.1			CK000816	AGRN	chr1	987189	+	AGRN	chr1	983716	+
5CDS-intron	ENST00000379370	ENST00000477585		ChiTaRS3.1			CK000816	AGRN	chr1	987189	+	AGRN	chr1	983716	+
intron-3CDS	ENST00000477585	ENST00000379370		ChiTaRS3.1			CK000816	AGRN	chr1	987189	+	AGRN	chr1	983716	+
intron-intron	ENST00000477585	ENST00000477585		ChiTaRS3.1			CK000816	AGRN	chr1	987189	+	AGRN	chr1	983716	+
3UTR-3UTR	ENST00000347330	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000347330	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000347330	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000347330	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000347330	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000413209	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000413209	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000413209	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000413209	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000413209	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000338641	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000338641	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000338641	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000338641	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000338641	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403435	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403435	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403435	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403435	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403435	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000361452	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000361452	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000361452	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-3UTR	ENST00000361452	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
3UTR-intron	ENST00000361452	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403999	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403999	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403999	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000403999	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000403999	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000334961	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000334961	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000334961	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000334961	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000334961	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000353887	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000353887	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000353887	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000353887	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000353887	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361166	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361166	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361166	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361166	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361166	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000397789	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000397789	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000397789	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000397789	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000397789	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361676	ENST00000347330		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361676	ENST00000413209		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361676	ENST00000338641		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000403435		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-3UTR	ENST00000361676	ENST00000361452		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000403999		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000334961		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000353887		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000361166		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000397789		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
intron-intron	ENST00000361676	ENST00000361676		ChiTaRS3.1			BF666966	NF2	chr22	30091773	+	NF2	chr22	30092742	-
5CDS-intron	ENST00000324225	ENST00000324225		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000324225	ENST00000431081		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000324225	ENST00000530948		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000324225	ENST00000532062		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000431081	ENST00000324225		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000431081	ENST00000431081		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000431081	ENST00000530948		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
5CDS-intron	ENST00000431081	ENST00000532062		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000530948	ENST00000324225		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000530948	ENST00000431081		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000530948	ENST00000530948		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000530948	ENST00000532062		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000532062	ENST00000324225		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000532062	ENST00000431081		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000532062	ENST00000530948		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000532062	ENST00000532062		ChiTaRS3.1			BF352676	SIDT2	chr11	117063078	+	SIDT2	chr11	117061455	-
intron-intron	ENST00000367739	ENST00000367739		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367739	ENST00000543628		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367739	ENST00000367735		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367739	ENST00000478333		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000543628	ENST00000367739		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000543628	ENST00000543628		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000543628	ENST00000367735		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000543628	ENST00000478333		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367735	ENST00000367739		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367735	ENST00000543628		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367735	ENST00000367735		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000367735	ENST00000478333		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000478333	ENST00000367739		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000478333	ENST00000543628		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000478333	ENST00000367735		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000478333	ENST00000478333		ChiTaRS3.1			BU677116	IFNGR1	chr6	137523372	+	IFNGR1	chr6	137523175	-
intron-intron	ENST00000434536	ENST00000485760		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000371236		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000371234		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000420954		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000439789		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000414851		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000371231		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000434536	ENST00000371230		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000485760		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000371236		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000371234		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000420954		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000439789		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000414851		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000371231		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000252512	ENST00000371230		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000485760		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000371236		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000371234		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000420954		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000439789		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000414851		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000371231		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000518017	ENST00000371230		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000485760		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000371236		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000371234		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000420954		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000439789		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000414851		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000371231		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000433566	ENST00000371230		ChiTaRS3.1			DB319216	XPO7	chr8	21790103	+	DAB1	chr1	58995981	+
intron-intron	ENST00000509176	ENST00000261250		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000509176	ENST00000545746		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000509176	ENST00000509318		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000333691	ENST00000261250		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000333691	ENST00000545746		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000333691	ENST00000509318		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000432775	ENST00000261250		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000432775	ENST00000545746		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000432775	ENST00000509318		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000504150	ENST00000261250		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000504150	ENST00000545746		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-intron	ENST00000504150	ENST00000509318		ChiTaRS3.1			BE082946	CCSER1	chr4	92254117	+	C12orf4	chr12	4639646	-
intron-5UTR	ENST00000406697	ENST00000406697		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000406697	ENST00000328916		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000406697	ENST00000360817		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000406697	ENST00000402681		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-intron	ENST00000406697	ENST00000495061		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000328916	ENST00000406697		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000328916	ENST00000328916		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000328916	ENST00000360817		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000328916	ENST00000402681		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-intron	ENST00000328916	ENST00000495061		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000360817	ENST00000406697		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000360817	ENST00000328916		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000360817	ENST00000360817		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000360817	ENST00000402681		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-intron	ENST00000360817	ENST00000495061		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000402681	ENST00000406697		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000402681	ENST00000328916		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000402681	ENST00000360817		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-5UTR	ENST00000402681	ENST00000402681		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
5UTR-intron	ENST00000402681	ENST00000495061		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000495061	ENST00000406697		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000495061	ENST00000328916		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000495061	ENST00000360817		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-5UTR	ENST00000495061	ENST00000402681		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-intron	ENST00000495061	ENST00000495061		ChiTaRS3.1			X06596	C1S	chr12	7168071	-	C1S	chr12	7169140	+
intron-intron	ENST00000239144	ENST00000389054		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000520569		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000253811		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000398566		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000398562		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000398557		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000389057		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000518047		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000239144	ENST00000494967		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000389054		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000520569		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000253811		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000398566		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000398562		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000398557		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000389057		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000518047		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-intron	ENST00000576562	ENST00000494967		ChiTaRS3.1			BX951816	HOXB8	chr17	46689848	-	DIAPH1	chr5	140910871	-
intron-3UTR	ENST00000375299	ENST00000331079		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
intron-intron	ENST00000375299	ENST00000437750		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
intron-3UTR	ENST00000351487	ENST00000331079		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
intron-intron	ENST00000351487	ENST00000437750		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
intron-3UTR	ENST00000475218	ENST00000331079		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
intron-intron	ENST00000475218	ENST00000437750		ChiTaRS3.1			BE695866	UPF3A	chr13	115064222	+	PRMT3	chr11	20530649	+
3UTR-3CDS	ENST00000585603	ENST00000373017		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000585603	ENST00000470902		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000585603	ENST00000540948		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000585603	ENST00000277480		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000585603	ENST00000373013		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000585603	ENST00000372998		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-3CDS	ENST00000221770	ENST00000373017		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000221770	ENST00000470902		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000221770	ENST00000540948		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000221770	ENST00000277480		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000221770	ENST00000373013		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000221770	ENST00000372998		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-3CDS	ENST00000392279	ENST00000373017		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000392279	ENST00000470902		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000392279	ENST00000540948		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000392279	ENST00000277480		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000392279	ENST00000373013		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
3UTR-intron	ENST00000392279	ENST00000372998		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-3CDS	ENST00000591824	ENST00000373017		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-intron	ENST00000591824	ENST00000470902		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-intron	ENST00000591824	ENST00000540948		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-intron	ENST00000591824	ENST00000277480		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-intron	ENST00000591824	ENST00000373013		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
intron-intron	ENST00000591824	ENST00000372998		ChiTaRS3.1			AA076566	POP4	chr19	30106485	-	LCN2	chr9	130912565	+
Frame-shit	ENST00000304858	ENST00000304858		ChiTaRS3.1			CA428616	HSPA4	chr5	132426999	-	HSPA4	chr5	132426925	+
5CDS-intron	ENST00000304858	ENST00000504328		ChiTaRS3.1			CA428616	HSPA4	chr5	132426999	-	HSPA4	chr5	132426925	+
intron-3CDS	ENST00000504328	ENST00000304858		ChiTaRS3.1			CA428616	HSPA4	chr5	132426999	-	HSPA4	chr5	132426925	+
intron-intron	ENST00000504328	ENST00000504328		ChiTaRS3.1			CA428616	HSPA4	chr5	132426999	-	HSPA4	chr5	132426925	+
In-frame	ENST00000296443	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000296443	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000296443	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000296443	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000296443	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000296443	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000296443	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000433541	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000433541	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000433541	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000433541	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000433541	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000433541	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000433541	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000422277	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000422277	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000422277	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000422277	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000422277	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000422277	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000422277	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000436480	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000436480	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000436480	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000436480	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000436480	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000436480	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000436480	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000444177	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000444177	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000456089	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000456089	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000456089	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000456089	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
Frame-shit	ENST00000456089	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
In-frame	ENST00000456089	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
5CDS-3UTR	ENST00000456089	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000296443		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000433541		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000422277		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000436480		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000444177		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3CDS	ENST00000492235	ENST00000456089		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
3UTR-3UTR	ENST00000492235	ENST00000492235		ChiTaRS3.1			BG981046	TREX1	chr3	48508537	+	TREX1	chr3	48508730	-
intron-3CDS	ENST00000536230	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-3CDS	ENST00000536230	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-intron	ENST00000536230	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-3CDS	ENST00000392282	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-3CDS	ENST00000392282	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-intron	ENST00000392282	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000538427	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000538427	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-intron	ENST00000538427	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000367456	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000367456	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-intron	ENST00000367456	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-3CDS	ENST00000461481	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-3CDS	ENST00000461481	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-intron	ENST00000461481	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000286332	ENST00000380516		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-3CDS	ENST00000286332	ENST00000536328		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
3UTR-intron	ENST00000286332	ENST00000557950		ChiTaRS3.1			AW379046	TAB2	chr6	149731578	-	SLTM	chr15	59185559	-
intron-intron	ENST00000481781	ENST00000434618		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000475304		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000489157		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000426633		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000456592		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000467834		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000374568		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000374572		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000395114		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000550330		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000552779		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000480059		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000437315		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000417059		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000456807		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000549949		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000553235		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000495024		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000383067		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000383066		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000551943		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000383065		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000546700		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000550794		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000461837		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000412144		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000383198		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000548408		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000383197		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000550915		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000481781	ENST00000549142		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000434618		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000475304		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000489157		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000426633		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000456592		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000467834		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000374568		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000374572		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000395114		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000550330		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000552779		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000480059		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000437315		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000417059		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000456807		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000549949		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000553235		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000495024		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000383067		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000383066		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000551943		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000383065		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000546700		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000550794		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000461837		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000412144		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000383198		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000548408		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000383197		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000550915		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
intron-intron	ENST00000397270	ENST00000549142		ChiTaRS3.1			BQ100666	INS-IGF2	chr11	2181065	+	TAPBP	chr6	4505306	+
5CDS-intron	ENST00000262305	ENST00000262305		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000457159		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000450428		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000262305		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000457159		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000450428		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000262305		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000457159		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000450428		ChiTaRS3.1			BM560676	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
intron-intron	ENST00000300853	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000300853	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000300853	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000423698	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000588738	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000340192	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000591636	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000589165	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000399537		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000430969		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000013807	ENST00000399434		ChiTaRS3.1			BF853556	ERCC1	chr19	45976850	-	TNRC18	chr7	5394075	-
intron-intron	ENST00000301732	ENST00000301732		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000301732	ENST00000382381		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000301732	ENST00000567910		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000382381	ENST00000301732		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000382381	ENST00000382381		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000382381	ENST00000567910		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000567910	ENST00000301732		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000567910	ENST00000382381		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000567910	ENST00000567910		ChiTaRS3.1			AV706856	ABCA3	chr16	2370928	-	ABCA3	chr16	2372048	-
intron-intron	ENST00000376322	ENST00000376322		ChiTaRS3.1			BE076666	PLP2	chrX	49031102	+	PLP2	chrX	49031338	-
intron-3UTR	ENST00000376322	ENST00000376327		ChiTaRS3.1			BE076666	PLP2	chrX	49031102	+	PLP2	chrX	49031338	-
3UTR-intron	ENST00000376327	ENST00000376322		ChiTaRS3.1			BE076666	PLP2	chrX	49031102	+	PLP2	chrX	49031338	-
3UTR-3UTR	ENST00000376327	ENST00000376327		ChiTaRS3.1			BE076666	PLP2	chrX	49031102	+	PLP2	chrX	49031338	-
intron-intron	ENST00000395338	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000395338	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000395338	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000395338	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000395338	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000458307	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000458307	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000458307	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000458307	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000458307	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000476226	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000476226	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000476226	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000476226	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000476226	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000538581	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000538581	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000538581	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000538581	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000538581	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000273588	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000273588	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000273588	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000273588	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000273588	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000546031	ENST00000475548		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000546031	ENST00000358743		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000546031	ENST00000347557		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000546031	ENST00000333137		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-intron	ENST00000546031	ENST00000404574		ChiTaRS3.1			DB332956	AMT	chr3	49454385	+	SMTN	chr22	31500736	-
intron-3UTR	ENST00000371225	ENST00000371225		ChiTaRS3.1			AA532706	TACSTD2	chr1	59041360	-	TACSTD2	chr1	59041123	+
intron-intron	ENST00000371720	ENST00000252577		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000360315		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000537887		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000404158		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000358713		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000429563		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000371720	ENST00000473184		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000252577		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000360315		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000537887		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000404158		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000358713		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000429563		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000371717	ENST00000473184		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000252577		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000360315		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000537887		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000404158		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000358713		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000429563		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
3UTR-intron	ENST00000399219	ENST00000473184		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000252577		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000360315		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000537887		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000404158		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000358713		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000429563		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-intron	ENST00000462616	ENST00000473184		ChiTaRS3.1			M78956	PMPCA	chr9	139317962	-	GATAD2A	chr19	19619740	-
intron-3CDS	ENST00000583688	ENST00000216465		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-5UTR	ENST00000583688	ENST00000361389		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-5UTR	ENST00000583688	ENST00000554279		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-intron	ENST00000583688	ENST00000557639		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-intron	ENST00000583688	ENST00000349555		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-intron	ENST00000583688	ENST00000556627		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-intron	ENST00000583688	ENST00000557053		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-5UTR	ENST00000583688	ENST00000393734		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-5UTR	ENST00000583688	ENST00000553586		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-3CDS	ENST00000330889	ENST00000216465		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000330889	ENST00000361389		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000330889	ENST00000554279		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000330889	ENST00000557639		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000330889	ENST00000349555		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000330889	ENST00000556627		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000330889	ENST00000557053		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000330889	ENST00000393734		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000330889	ENST00000553586		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-3CDS	ENST00000580525	ENST00000216465		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000580525	ENST00000361389		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000580525	ENST00000554279		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000580525	ENST00000557639		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000580525	ENST00000349555		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000580525	ENST00000556627		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-intron	ENST00000580525	ENST00000557053		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000580525	ENST00000393734		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
3UTR-5UTR	ENST00000580525	ENST00000553586		ChiTaRS3.1			AI636936	ADAP2	chr17	29284924	-	GSTZ1	chr14	77791235	-
intron-intron	ENST00000334512	ENST00000487917		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000334512	ENST00000323927		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000478357	ENST00000487917		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000478357	ENST00000323927		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000446377	ENST00000487917		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000446377	ENST00000323927		ChiTaRS3.1			BI058046	ZMIZ1	chr10	80879849	-	ANAPC2	chr9	140073844	+
intron-intron	ENST00000419277	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000419277	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000428995	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000463066	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000443117	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551196	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000480521	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000415247	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000484255	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000454805	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000549300	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000475500	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000374808	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000552158	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000488565	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000383224	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000551933	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000474244	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000422504	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550806	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000494775	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000515317	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000550456	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000419277		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000428995		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000463066		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000443117		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000551196		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000480521		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000415247		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000484255		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000454805		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000549300		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000475500		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000374808		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000552158		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000488565		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000383224		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000551933		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000474244		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000422504		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000550806		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000494775		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000515317		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000550456		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-intron	ENST00000502285	ENST00000502285		ChiTaRS3.1			AA744436	HLA-DPA1	chr6	4517085	+	HLA-DPA1	chr6	4268980	-
intron-3UTR	ENST00000265044	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000265044	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000467789	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000467789	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000476217	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000476217	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000478842	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000478842	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000463503	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000463503	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000496050	ENST00000375712		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000496050	ENST00000418717		ChiTaRS3.1			AI096496	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000435213	ENST00000435213		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000435213	ENST00000314904		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000435213	ENST00000373387		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000435213	ENST00000496711		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000314904	ENST00000435213		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000314904	ENST00000314904		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000314904	ENST00000373387		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000314904	ENST00000496711		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000373387	ENST00000435213		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000373387	ENST00000314904		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000373387	ENST00000373387		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000373387	ENST00000496711		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000496711	ENST00000435213		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000496711	ENST00000314904		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000496711	ENST00000373387		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
intron-intron	ENST00000496711	ENST00000496711		ChiTaRS3.1			T05476	GARNL3	chr9	130131176	-	GARNL3	chr9	130134933	-
3UTR-3UTR	ENST00000264451	ENST00000264451		ChiTaRS3.1			BM906216	SLC30A9	chr4	42088924	-	SLC30A9	chr4	42088945	+
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY282404	MLLT3	chr9	20373293	-	KMT2A	chr11	118359137	+
intron-intron	ENST00000504032	ENST00000361756		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000533380		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000393713		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000490867		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000545854		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000530137		ChiTaRS3.1			AI005126	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
Frame-shit	ENST00000374640	ENST00000374640		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374640	ENST00000374639		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374640	ENST00000374637		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374639	ENST00000374640		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374639	ENST00000374639		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374639	ENST00000374637		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374637	ENST00000374640		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
Frame-shit	ENST00000374637	ENST00000374639		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
In-frame	ENST00000374637	ENST00000374637		ChiTaRS3.1			BE769806	C1QC	chr1	22970664	-	C1QC	chr1	22974216	-
intron-3CDS	ENST00000359486	ENST00000359486		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000335626		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000359486	ENST00000404876		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000359486		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000335626		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000335626	ENST00000404876		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000359486		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000335626		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-3CDS	ENST00000404876	ENST00000404876		ChiTaRS3.1			BE218956	TCF20	chr22	42556269	+	TCF20	chr22	42575684	-
intron-5UTR	ENST00000373570	ENST00000368521		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000373570	ENST00000362076		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000373570	ENST00000350592		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000373570	ENST00000368519		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-intron	ENST00000373570	ENST00000483282		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-intron	ENST00000373570	ENST00000368518		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000373570	ENST00000368516		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000348462	ENST00000368521		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000348462	ENST00000362076		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000348462	ENST00000350592		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000348462	ENST00000368519		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-intron	ENST00000348462	ENST00000483282		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-intron	ENST00000348462	ENST00000368518		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
intron-5UTR	ENST00000348462	ENST00000368516		ChiTaRS3.1			CN394906	RPL35	chr9	127620281	+	C1orf43	chr1	154193017	-
Frame-shit	ENST00000609104	ENST00000356352		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
Frame-shit	ENST00000609104	ENST00000357604		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
Frame-shit	ENST00000609104	ENST00000397053		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
5CDS-intron	ENST00000609104	ENST00000460569		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000277575	ENST00000356352		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000277575	ENST00000357604		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000277575	ENST00000397053		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-intron	ENST00000277575	ENST00000460569		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000379237	ENST00000356352		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000379237	ENST00000357604		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000379237	ENST00000397053		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-intron	ENST00000379237	ENST00000460569		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000443016	ENST00000356352		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000443016	ENST00000357604		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000443016	ENST00000397053		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-intron	ENST00000443016	ENST00000460569		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000609853	ENST00000356352		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000609853	ENST00000357604		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-3CDS	ENST00000609853	ENST00000397053		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-intron	ENST00000609853	ENST00000460569		ChiTaRS3.1			BG385736	USP6NL	chr10	11639628	-	UPF2	chr10	11998520	-
intron-intron	ENST00000533760	ENST00000360822		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000533760	ENST00000359309		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000533760	ENST00000349780		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000533760	ENST00000360190		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-5UTR	ENST00000533760	ENST00000480467		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000397957	ENST00000360822		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000397957	ENST00000359309		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000397957	ENST00000349780		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000397957	ENST00000360190		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-5UTR	ENST00000397957	ENST00000480467		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000316851	ENST00000360822		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000316851	ENST00000359309		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000316851	ENST00000349780		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000316851	ENST00000360190		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-5UTR	ENST00000316851	ENST00000480467		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000401611	ENST00000360822		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000401611	ENST00000359309		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000401611	ENST00000349780		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000401611	ENST00000360190		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-5UTR	ENST00000401611	ENST00000480467		ChiTaRS3.1			BI038396	NCAM1	chr11	113133265	-	CDK5RAP2	chr9	123165648	-
intron-intron	ENST00000359087	ENST00000359087		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000359087	ENST00000290810		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000359087	ENST00000379463		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000359087	ENST00000394074		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000359087	ENST00000564040		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000290810	ENST00000359087		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000290810	ENST00000290810		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000290810	ENST00000379463		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000290810	ENST00000394074		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000290810	ENST00000564040		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000379463	ENST00000359087		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000379463	ENST00000290810		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000379463	ENST00000379463		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000379463	ENST00000394074		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000379463	ENST00000564040		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000394074	ENST00000359087		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000394074	ENST00000290810		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000394074	ENST00000379463		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000394074	ENST00000394074		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000394074	ENST00000564040		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000564040	ENST00000359087		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000564040	ENST00000290810		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000564040	ENST00000379463		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000564040	ENST00000394074		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
intron-intron	ENST00000564040	ENST00000564040		ChiTaRS3.1			AA165566	NAE1	chr16	66847498	-	NAE1	chr16	66847472	+
5CDS-3UTR	ENST00000326291	ENST00000360635		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-3UTR	ENST00000326291	ENST00000238091		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-3UTR	ENST00000326291	ENST00000355346		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-5UTR	ENST00000326291	ENST00000490426		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-3UTR	ENST00000326291	ENST00000359712		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-3UTR	ENST00000326291	ENST00000488451		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
5CDS-intron	ENST00000326291	ENST00000456913		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-3UTR	ENST00000489922	ENST00000360635		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-3UTR	ENST00000489922	ENST00000238091		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-3UTR	ENST00000489922	ENST00000355346		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-5UTR	ENST00000489922	ENST00000490426		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-3UTR	ENST00000489922	ENST00000359712		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-3UTR	ENST00000489922	ENST00000488451		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
intron-intron	ENST00000489922	ENST00000456913		ChiTaRS3.1			CN414976	PIBF1	chr13	73428207	-	ITGB1BP1	chr2	9546876	-
Frame-shit	ENST00000444495	ENST00000444495		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
Frame-shit	ENST00000444495	ENST00000273783		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
5CDS-intron	ENST00000444495	ENST00000432569		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
5CDS-intron	ENST00000444495	ENST00000498831		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
Frame-shit	ENST00000273783	ENST00000444495		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
Frame-shit	ENST00000273783	ENST00000273783		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
5CDS-intron	ENST00000273783	ENST00000432569		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
5CDS-intron	ENST00000273783	ENST00000498831		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-3CDS	ENST00000432569	ENST00000444495		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-3CDS	ENST00000432569	ENST00000273783		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-intron	ENST00000432569	ENST00000432569		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-intron	ENST00000432569	ENST00000498831		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-3CDS	ENST00000498831	ENST00000444495		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-3CDS	ENST00000498831	ENST00000273783		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-intron	ENST00000498831	ENST00000432569		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
intron-intron	ENST00000498831	ENST00000498831		ChiTaRS3.1			BM011896	EIF2B5	chr3	183860093	-	EIF2B5	chr3	183858403	+
5CDS-intron	ENST00000373913	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373913	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373913	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373913	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
3UTR-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000373913		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000401952		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000339266		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000475894		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
5CDS-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			AV707446	DLGAP4	chr20	35128717	+	DLGAP4	chr20	35128117	+
intron-3UTR	ENST00000458694	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000458694	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000458694	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000359201	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000359201	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000359201	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394263	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394263	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000394263	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394259	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394259	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000394259	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394260	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000394260	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000394260	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000463606	ENST00000361198		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3UTR	ENST00000463606	ENST00000425280		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-intron	ENST00000463606	ENST00000490751		ChiTaRS3.1			BE716596	PRICKLE4	chr6	41757408	-	LDB1	chr10	103867564	+
intron-3CDS	ENST00000376113	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000376113	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000376113	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000376113	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000346226	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000346226	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000346226	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000346226	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000352848	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000352848	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000352848	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000352848	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393041	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393041	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393041	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393041	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000348750	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000348750	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000348750	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000348750	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000357970	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000357970	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000357970	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000357970	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000259238	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000259238	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000259238	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000259238	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393040	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393040	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000393040	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000393040	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000351659	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000351659	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000351659	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000351659	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000316724	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000316724	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000316724	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000316724	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000409400	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000409400	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000409400	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000409400	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000466111	ENST00000262953		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000466111	ENST00000455444		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000466111	ENST00000591529		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000586422		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000447365		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000443826		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000590536		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000426948		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-intron	ENST00000466111	ENST00000587217		ChiTaRS3.1			BE839306	BIN1	chr2	127830315	+	TLE2	chr19	3005524	+
intron-3CDS	ENST00000299432	ENST00000374807		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000299432	ENST00000374811		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000299432	ENST00000374804		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000299432	ENST00000312391		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000372912	ENST00000374807		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000372912	ENST00000374811		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000372912	ENST00000374804		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-3CDS	ENST00000372912	ENST00000312391		ChiTaRS3.1			AK129496	MSS51	chr10	75186863	-	LAS1L	chrX	64749630	-
intron-intron	ENST00000535891	ENST00000513408		ChiTaRS3.1			BI019996	AOAH	chr7	36557833	+	GUSBP3	chr5	69414291	+
intron-intron	ENST00000258749	ENST00000513408		ChiTaRS3.1			BI019996	AOAH	chr7	36557833	+	GUSBP3	chr5	69414291	+
intron-intron	ENST00000431169	ENST00000513408		ChiTaRS3.1			BI019996	AOAH	chr7	36557833	+	GUSBP3	chr5	69414291	+
intron-intron	ENST00000538464	ENST00000513408		ChiTaRS3.1			BI019996	AOAH	chr7	36557833	+	GUSBP3	chr5	69414291	+
intron-intron	ENST00000491444	ENST00000513408		ChiTaRS3.1			BI019996	AOAH	chr7	36557833	+	GUSBP3	chr5	69414291	+
intron-3CDS	ENST00000394947	ENST00000572887		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000394947	ENST00000219240		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3UTR	ENST00000394947	ENST00000573922		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000360439	ENST00000572887		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000360439	ENST00000219240		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3UTR	ENST00000360439	ENST00000573922		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000394949	ENST00000572887		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000394949	ENST00000219240		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3UTR	ENST00000394949	ENST00000573922		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000567289	ENST00000572887		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3CDS	ENST00000567289	ENST00000219240		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-3UTR	ENST00000567289	ENST00000573922		ChiTaRS3.1			AW006026	SIN3A	chr15	75663568	+	DHODH	chr16	72057095	-
intron-intron	ENST00000260766	ENST00000260766		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000260766	ENST00000371380		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000260766	ENST00000371385		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000260766	ENST00000371375		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000260766	ENST00000464214		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371380	ENST00000260766		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371380	ENST00000371380		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371380	ENST00000371385		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371380	ENST00000371375		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371380	ENST00000464214		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371385	ENST00000260766		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371385	ENST00000371380		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371385	ENST00000371385		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371385	ENST00000371375		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371385	ENST00000464214		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371375	ENST00000260766		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371375	ENST00000371380		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371375	ENST00000371385		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371375	ENST00000371375		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000371375	ENST00000464214		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000464214	ENST00000260766		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000464214	ENST00000371380		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000464214	ENST00000371385		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000464214	ENST00000371375		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-intron	ENST00000464214	ENST00000464214		ChiTaRS3.1			AK025366	PLCE1	chr10	96013085	+	PLCE1	chr10	96008147	+
intron-3UTR	ENST00000378609	ENST00000378609		ChiTaRS3.1			AA650206	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-intron	ENST00000378609	ENST00000472614		ChiTaRS3.1			AA650206	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-3UTR	ENST00000472614	ENST00000378609		ChiTaRS3.1			AA650206	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-intron	ENST00000472614	ENST00000472614		ChiTaRS3.1			AA650206	GNB1	chr1	1717039	-	GNB1	chr1	1717101	+
intron-3CDS	ENST00000368704	ENST00000535601		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368704	ENST00000218364		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368706	ENST00000535601		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368706	ENST00000218364		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368703	ENST00000535601		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368703	ENST00000218364		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368705	ENST00000535601		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000368705	ENST00000218364		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000474991	ENST00000535601		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
intron-3CDS	ENST00000474991	ENST00000218364		ChiTaRS3.1			AI343506	S100A16	chr1	153579487	+	HTATSF1	chrX	135594016	-
5CDS-intron	ENST00000389266	ENST00000238256		ChiTaRS3.1			T29506	GARS	chr7	30673418	-	FKBP15	chr9	115944272	+
5CDS-intron	ENST00000389266	ENST00000493847		ChiTaRS3.1			T29506	GARS	chr7	30673418	-	FKBP15	chr9	115944272	+
intron-intron	ENST00000453228	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000453228	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000453228	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000354410	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000354410	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000354410	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558856	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558856	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558856	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558812	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558812	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000558812	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000338042	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000338042	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000338042	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557785	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557785	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557785	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000449277	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000449277	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000449277	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557942	ENST00000205061		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557942	ENST00000422840		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000557942	ENST00000447066		ChiTaRS3.1			BQ722566	MEF2A	chr15	100210538	+	GLG1	chr16	74484506	-
intron-intron	ENST00000338205	ENST00000338205		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000338205	ENST00000259335		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000338205	ENST00000374378		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000338205	ENST00000465499		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000259335	ENST00000338205		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000259335	ENST00000259335		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000259335	ENST00000374378		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000259335	ENST00000465499		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000374378	ENST00000338205		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000374378	ENST00000259335		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000374378	ENST00000374378		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000374378	ENST00000465499		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000465499	ENST00000338205		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000465499	ENST00000259335		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000465499	ENST00000374378		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
intron-intron	ENST00000465499	ENST00000465499		ChiTaRS3.1			AW805636	KIAA0368	chr9	114124674	+	KIAA0368	chr9	114124634	-
5CDS-intron	ENST00000368445	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368445	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368449	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000448116	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368450	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000368453	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
5CDS-intron	ENST00000606391	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000382275		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000507958		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000502796		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000511273		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000274170		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000506372		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
intron-intron	ENST00000490667	ENST00000510297		ChiTaRS3.1			CD238366	SHC1	chr1	154934774	-	CDH18	chr5	19835607	-
3UTR-intron	ENST00000312521	ENST00000376406		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000376405		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000494654		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000427406		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000547874		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000551460		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000547700		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000481026		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000552522		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000420019		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548112		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000550004		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548103		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000473187		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000552474		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000420320		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000552263		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000551204		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000549428		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000495325		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000547681		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000449153		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000553048		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000546487		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000553196		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000494715		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000547353		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000383566		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548827		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000552349		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000550408		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000481547		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000550688		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000440369		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000547047		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548542		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548248		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000482029		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000550500		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000435664		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000548433		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-3UTR	ENST00000312521	ENST00000551740		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000467476		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
3UTR-intron	ENST00000312521	ENST00000546539		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000376406		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000376405		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000494654		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000427406		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000547874		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000551460		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000547700		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000481026		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000552522		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000420019		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548112		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000550004		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548103		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000473187		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000552474		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000420320		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000552263		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000551204		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000549428		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000495325		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000547681		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000449153		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000553048		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000546487		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000553196		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000494715		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000547353		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000383566		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548827		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000552349		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000550408		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000481547		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000550688		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000440369		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000547047		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548542		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548248		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000482029		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000550500		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000435664		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000548433		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-3UTR	ENST00000492552	ENST00000551740		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000467476		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000492552	ENST00000546539		ChiTaRS3.1			BF802516	NR1D2	chr3	24021321	+	MDC1	chr6	2005041	+
intron-intron	ENST00000378204	ENST00000378204		ChiTaRS3.1			AI209006	EXT1	chr8	118875219	-	EXT1	chr8	118875594	+
Frame-shit	ENST00000261658	ENST00000261658		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000261658	ENST00000563971		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000261658	ENST00000426842		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000261658	ENST00000563082		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000261658		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000563971		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000563971	ENST00000426842		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000563971	ENST00000563082		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000261658		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000563971		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
Frame-shit	ENST00000426842	ENST00000426842		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
5CDS-intron	ENST00000426842	ENST00000563082		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000261658		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000563971		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000563082	ENST00000426842		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-intron	ENST00000563082	ENST00000563082		ChiTaRS3.1			BQ424556	BFAR	chr16	14748960	-	BFAR	chr16	14749017	+
intron-3CDS	ENST00000316649	ENST00000421974		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000456496		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000479613		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000606024		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000316649	ENST00000464662		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000425642		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000316649	ENST00000495408		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000367748	ENST00000421974		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000456496		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000479613		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000606024		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367748	ENST00000464662		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000425642		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367748	ENST00000495408		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000541547	ENST00000421974		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000456496		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000479613		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000606024		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000541547	ENST00000464662		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000425642		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000541547	ENST00000495408		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000468393	ENST00000421974		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000456496		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000479613		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000606024		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000468393	ENST00000464662		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000425642		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000468393	ENST00000495408		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000367746	ENST00000421974		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000456496		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000479613		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000606024		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367746	ENST00000464662		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000425642		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367746	ENST00000495408		ChiTaRS3.1			AA528216	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000265563	ENST00000475040		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
intron-intron	ENST00000265563	ENST00000272418		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
intron-intron	ENST00000454963	ENST00000475040		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
intron-intron	ENST00000454963	ENST00000272418		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
intron-intron	ENST00000296446	ENST00000475040		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
intron-intron	ENST00000296446	ENST00000272418		ChiTaRS3.1			BG990796	PRKAR2A	chr3	48788257	-	MRPS5	chr2	95781052	-
Frame-shit	ENST00000192788	ENST00000192788		ChiTaRS3.1			AL045936	UHRF1BP1	chr6	34826618	-	UHRF1BP1	chr6	34826652	+
Frame-shit	ENST00000192788	ENST00000452449		ChiTaRS3.1			AL045936	UHRF1BP1	chr6	34826618	-	UHRF1BP1	chr6	34826652	+
Frame-shit	ENST00000452449	ENST00000192788		ChiTaRS3.1			AL045936	UHRF1BP1	chr6	34826618	-	UHRF1BP1	chr6	34826652	+
Frame-shit	ENST00000452449	ENST00000452449		ChiTaRS3.1			AL045936	UHRF1BP1	chr6	34826618	-	UHRF1BP1	chr6	34826652	+
5CDS-3UTR	ENST00000370544	ENST00000370544		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
5CDS-3UTR	ENST00000370544	ENST00000370542		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
5CDS-3UTR	ENST00000370544	ENST00000489303		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
5CDS-3UTR	ENST00000370542	ENST00000370544		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
5CDS-3UTR	ENST00000370542	ENST00000370542		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
5CDS-3UTR	ENST00000370542	ENST00000489303		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
3UTR-3UTR	ENST00000489303	ENST00000370544		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
3UTR-3UTR	ENST00000489303	ENST00000370542		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
3UTR-3UTR	ENST00000489303	ENST00000489303		ChiTaRS3.1			BF834546	LMO4	chr1	87805745	-	LMO4	chr1	87810530	+
intron-3CDS	ENST00000526148	ENST00000526148		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000525681		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000339995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000526148	ENST00000396525		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000526148		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000525681		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000339995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525681	ENST00000396525		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000526148		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000525681		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000339995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000339995	ENST00000396525		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000526148		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000525681		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000339995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000396525	ENST00000396525		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000526148		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000525681		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000339995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3CDS	ENST00000525995	ENST00000396525		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			AW948786	EIF4G2	chr11	10823908	-	EIF4G2	chr11	10825034	+
intron-3UTR	ENST00000375640	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375640	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375640	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375640	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375640	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375640	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375641	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375638	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375635	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375639	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375642	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395789	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000375633	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000395788	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000424962	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456268	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000435938	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433752	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000458514	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000549426	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550200	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000430690	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436558	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000456690	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439907	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444974	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000439865	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000413638	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423640	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444192	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551797	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000552514	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000440361	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000443974	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000416886	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436205	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000450610	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000433697	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000414434	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421605	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000444331	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000551957	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000550492	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000423916	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000436495	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000426843	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000421039	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000414536	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400038	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383384	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383385	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000383383	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000547624	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5CDS-3UTR	ENST00000550685	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400037	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
5UTR-3UTR	ENST00000400035	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400034	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000466801		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000409321		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000409115		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000341369		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000409683		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-3UTR	ENST00000400039	ENST00000410064		ChiTaRS3.1			BG531546	C6orf48	chr6	3096426	+	PTMA	chr2	232576612	+
intron-intron	ENST00000406337	ENST00000406337		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000406337	ENST00000265713		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000406337	ENST00000396930		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000406337	ENST00000485568		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000265713	ENST00000406337		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000265713	ENST00000265713		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000265713	ENST00000396930		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000265713	ENST00000485568		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000396930	ENST00000406337		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000396930	ENST00000265713		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000396930	ENST00000396930		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000396930	ENST00000485568		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000485568	ENST00000406337		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000485568	ENST00000265713		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000485568	ENST00000396930		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-intron	ENST00000485568	ENST00000485568		ChiTaRS3.1			AA868356	KAT6A	chr8	41895620	+	KAT6A	chr8	41850830	+
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394464	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000343796	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000415690	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000424646	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504572	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000394466	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000231509	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000416954	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000503201	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-3UTR	ENST00000504336	ENST00000415690		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000424646		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			AW975686	NR3C1	chr5	142658366	-	NR3C1	chr5	142658431	+
intron-intron	ENST00000322507	ENST00000563675		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000541464		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000381414		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000396229		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000542583		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000219821		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000561503		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000322507	ENST00000564959		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000563675		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000541464		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000381414		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000396229		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000542583		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000219821		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000561503		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000345356	ENST00000564959		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000563675		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000541464		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000381414		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000396229		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000542583		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000219821		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000561503		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000416123	ENST00000564959		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000563675		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000541464		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000381414		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000396229		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000542583		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000219821		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000561503		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000483888	ENST00000564959		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000563675		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000541464		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000381414		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000396229		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000542583		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000219821		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000561503		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
intron-intron	ENST00000511023	ENST00000564959		ChiTaRS3.1			BM987506	COL12A1	chr6	75796003	+	TMC5	chr16	19462412	-
5UTR-3CDS	ENST00000535781	ENST00000535781		ChiTaRS3.1			AI620966	PRPF6	chr20	62612591	-	PRPF6	chr20	62642697	-
3UTR-3UTR	ENST00000300086	ENST00000300086		ChiTaRS3.1			AA113346	TERF2IP	chr16	75690984	-	TERF2IP	chr16	75690850	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW419196	MALAT1	chr11	65267333	+	MALAT1	chr11	65266763	+
Frame-shit	ENST00000274000	ENST00000313117		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
Frame-shit	ENST00000274000	ENST00000446327		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
Frame-shit	ENST00000274000	ENST00000409276		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
intron-3CDS	ENST00000309703	ENST00000313117		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
intron-3CDS	ENST00000309703	ENST00000446327		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
intron-3CDS	ENST00000309703	ENST00000409276		ChiTaRS3.1			AK094126	AP1AR	chr4	113184184	+	SRSF7	chr2	38976683	-
intron-3CDS	ENST00000452135	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000452135	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000452135	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000393360	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000393360	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000393360	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000455781	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000455781	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000455781	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000343111	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000343111	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000343111	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000347470	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000347470	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000347470	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000397072	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000397072	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000397072	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000425491	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000425491	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000425491	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000539014	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000539014	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000539014	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000524170	ENST00000496817		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000524170	ENST00000368719		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-3CDS	ENST00000524170	ENST00000368720		ChiTaRS3.1			BI963166	MAPK9	chr5	179660683	+	S100A6	chr1	153507760	+
intron-intron	ENST00000400105	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000400105	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000317931	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000317931	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000284898	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000284898	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000400104	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000400104	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000535782	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000535782	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000578677	ENST00000488633		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-intron	ENST00000578677	ENST00000469320		ChiTaRS3.1			AK098406	L3MBTL4	chr18	6241403	-	CIAO1	chr2	96938354	+
intron-3UTR	ENST00000478194	ENST00000380087		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000478194	ENST00000380084		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000478194	ENST00000404022		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000217289	ENST00000380087		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000217289	ENST00000380084		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000217289	ENST00000404022		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000536936	ENST00000380087		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000536936	ENST00000380084		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
intron-3UTR	ENST00000536936	ENST00000404022		ChiTaRS3.1			AW054656	FERMT1	chr20	6055568	+	RBBP7	chrX	16862858	+
In-frame	ENST00000378526	ENST00000378526		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
In-frame	ENST00000378526	ENST00000262327		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
5CDS-intron	ENST00000378526	ENST00000586407		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
In-frame	ENST00000262327	ENST00000378526		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
In-frame	ENST00000262327	ENST00000262327		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
5CDS-intron	ENST00000262327	ENST00000586407		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
intron-3CDS	ENST00000586407	ENST00000378526		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
intron-3CDS	ENST00000586407	ENST00000262327		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
intron-intron	ENST00000586407	ENST00000586407		ChiTaRS3.1			BQ306956	LIG3	chr17	33321419	+	LIG3	chr17	33323156	-
intron-intron	ENST00000376980	ENST00000376980		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000376980	ENST00000376946		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000376980	ENST00000483085		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000376946	ENST00000376980		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000376946	ENST00000376946		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000376946	ENST00000483085		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000483085	ENST00000376980		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000483085	ENST00000376946		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
intron-intron	ENST00000483085	ENST00000483085		ChiTaRS3.1			AK129626	DNAJC1	chr10	22196342	-	DNAJC1	chr10	22199731	-
3UTR-intron	ENST00000389757	ENST00000425019		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000324219		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000350198		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000302217		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000413150		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000347699		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000456652		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000350878		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389757	ENST00000498066		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000425019		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000324219		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000350198		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000302217		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000413150		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000347699		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000456652		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000350878		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
3UTR-intron	ENST00000389759	ENST00000498066		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000425019		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000324219		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000350198		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000302217		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000413150		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000347699		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000456652		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000350878		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000495123	ENST00000498066		ChiTaRS3.1			AW896076	PKP4	chr2	159537234	-	MAP4K4	chr2	102480029	+
intron-intron	ENST00000558170	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000558170	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000409487	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000303660	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000539609	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000493689	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000470879	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000465070	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000550418		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000553186		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000547372		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000422070		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000535565		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000547427		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000552089		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000547338		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000436368		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000311745		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000355637		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-intron	ENST00000462355	ENST00000340209		ChiTaRS3.1			BF948186	ZEB2	chr2	145156278	+	RBFOX1	chr16	7055658	-
intron-3UTR	ENST00000264414	ENST00000264414		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000264414	ENST00000344951		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000264414	ENST00000409096		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000264414	ENST00000409777		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000264414	ENST00000432260		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000344951	ENST00000264414		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000344951	ENST00000344951		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000344951	ENST00000409096		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000344951	ENST00000409777		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000344951	ENST00000432260		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000409096	ENST00000264414		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000409096	ENST00000344951		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409096	ENST00000409096		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409096	ENST00000409777		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409096	ENST00000432260		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000409777	ENST00000264414		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000409777	ENST00000344951		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409777	ENST00000409096		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409777	ENST00000409777		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000409777	ENST00000432260		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000432260	ENST00000264414		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-3UTR	ENST00000432260	ENST00000344951		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000432260	ENST00000409096		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000432260	ENST00000409777		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000432260	ENST00000432260		ChiTaRS3.1			BQ231996	CUL3	chr2	225337789	+	CUL3	chr2	225337755	-
intron-intron	ENST00000470422	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000470422	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000470422	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000470422	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000470422	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000470422	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000246043	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377813	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000377807	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000360807	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000470422		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000246043		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000377813		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000377807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000360807		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000455029	ENST00000455029		ChiTaRS3.1			BG984836	RRBP1	chr20	17594690	-	RRBP1	chr20	17615002	-
intron-intron	ENST00000398842	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398842	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398809	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000461841	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000299366	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000224721	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000398788	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398309		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000376104		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000418306		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000280241		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000543673		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000376106		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000330014		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000537455		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000524982		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000532653		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000531015		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398301		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000426717		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000404783		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000398304		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000530800		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-intron	ENST00000475158	ENST00000472545		ChiTaRS3.1			T05956	CDH23	chr10	73510655	+	DLG2	chr11	84752058	+
intron-3CDS	ENST00000521308	ENST00000253270		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3CDS	ENST00000521308	ENST00000375259		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3CDS	ENST00000521308	ENST00000375257		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-5UTR	ENST00000521308	ENST00000482643		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3CDS	ENST00000355417	ENST00000253270		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3CDS	ENST00000355417	ENST00000375259		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3CDS	ENST00000355417	ENST00000375257		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-5UTR	ENST00000355417	ENST00000482643		ChiTaRS3.1			BF085006	CCDC69	chr5	150581162	+	SLC35D2	chr9	99113415	-
intron-3UTR	ENST00000295324	ENST00000295324		ChiTaRS3.1			BU177566	CDC42EP3	chr2	37872398	+	CDC42EP3	chr2	37872765	-
intron-intron	ENST00000376773	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376773	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376773	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376772	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376772	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376769	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376769	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376765	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376765	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376763	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376763	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000376758	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000376758	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000441553	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000441553	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437937	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437937	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000446310	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000446310	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414618	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414618	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000434591	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000434591	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000452227	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000452227	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430828	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430828	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000436591	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000436591	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448210	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448210	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444994	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444994	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000412077	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000412077	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000422273	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000422273	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000433942	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000433942	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000452679	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000452679	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000417223	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000417223	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000436833	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000436833	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000428563	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000428563	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-3UTR	ENST00000449435	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
5CDS-intron	ENST00000449435	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455350	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455350	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448378	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448378	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000429382	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000429382	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000418211	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000418211	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000444101	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000444101	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000430959	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000430959	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400658	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400658	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000383612	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000383612	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400657	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400657	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400656	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400656	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400655	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400655	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-3UTR	ENST00000400654	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
3UTR-intron	ENST00000400654	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000448550	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000448550	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431424	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431424	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000414032	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000414032	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000439463	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000439463	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000451993	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000451993	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000450177	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000450177	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000437171	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000437171	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000449087	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000449087	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000431977	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000431977	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000433662	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000433662	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000458506	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000458506	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376773		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376772		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376769		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376765		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376763		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000376758		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000441553		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000437937		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000446310		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000414618		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000434591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000452227		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000430828		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000436591		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000448210		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000444994		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000412077		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000422273		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000433942		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000452679		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000417223		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000436833		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000428563		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000449435		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000455350		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000448378		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000429382		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000418211		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000444101		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000430959		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000400658		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000383612		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000400657		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000400656		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000400655		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-3UTR	ENST00000455887	ENST00000400654		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000448550		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000431424		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000414032		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000439463		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000451993		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000450177		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000437171		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000449087		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000431977		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000433662		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000458506		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000455887	ENST00000455887		ChiTaRS3.1			BU182636	PPP1R11	chr6	1330621	-	PPP1R11	chr6	1330882	+
intron-intron	ENST00000389221	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000389221	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000508903	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000508903	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397462	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397462	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000391893	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000391893	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000403703	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000403703	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000248104	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000248104	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397464	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000397464	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000402641	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000402641	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000301712	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000301712	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000503648	ENST00000159647		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-intron	ENST00000503648	ENST00000395842		ChiTaRS3.1			H18396	UNKL	chr16	1427390	-	PANX2	chr22	50617619	+
intron-5UTR	ENST00000221859	ENST00000355857		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-5UTR	ENST00000221859	ENST00000535617		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-5UTR	ENST00000221859	ENST00000535757		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-5UTR	ENST00000221859	ENST00000409094		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-intron	ENST00000221859	ENST00000311521		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-intron	ENST00000221859	ENST00000460901		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-intron	ENST00000221859	ENST00000542275		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-intron	ENST00000221859	ENST00000393103		ChiTaRS3.1			AA165636	POLR2I	chr19	36604957	+	DBI	chr2	120124574	+
intron-3UTR	ENST00000178638	ENST00000178638		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000178638	ENST00000344366		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000178638	ENST00000422263		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000178638	ENST00000560666		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-3UTR	ENST00000344366	ENST00000178638		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000344366	ENST00000344366		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000344366	ENST00000422263		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000344366	ENST00000560666		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-3UTR	ENST00000422263	ENST00000178638		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000422263	ENST00000344366		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000422263	ENST00000422263		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000422263	ENST00000560666		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-3UTR	ENST00000560666	ENST00000178638		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000560666	ENST00000344366		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000560666	ENST00000422263		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000560666	ENST00000560666		ChiTaRS3.1			CA312936	CA12	chr15	63616064	+	CA12	chr15	63616358	-
intron-intron	ENST00000497571	ENST00000367505		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000497571	ENST00000367503		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000497571	ENST00000438092		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000497571	ENST00000275233		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000542957	ENST00000367505		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000542957	ENST00000367503		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000542957	ENST00000438092		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000542957	ENST00000275233		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000173785	ENST00000367505		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000173785	ENST00000367503		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000173785	ENST00000438092		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000173785	ENST00000275233		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000469435	ENST00000367505		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000469435	ENST00000367503		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000469435	ENST00000438092		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
intron-intron	ENST00000469435	ENST00000275233		ChiTaRS3.1			DB360426	KLF6	chr10	3821339	+	SHPRH	chr6	146253257	+
3UTR-intron	ENST00000582707	ENST00000324768		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
3UTR-intron	ENST00000582707	ENST00000495455		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
intron-intron	ENST00000400266	ENST00000324768		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
intron-intron	ENST00000400266	ENST00000495455		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
3UTR-intron	ENST00000383589	ENST00000324768		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
3UTR-intron	ENST00000383589	ENST00000495455		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
3UTR-intron	ENST00000261601	ENST00000324768		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
3UTR-intron	ENST00000261601	ENST00000495455		ChiTaRS3.1			BG179286	USP14	chr18	211366	+	CREG2	chr2	101998163	-
intron-intron	ENST00000380473	ENST00000400098		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000400100		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000400097		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000553597		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000390687		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000346403		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000554227		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000577565		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000380473	ENST00000444203		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000400098		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000400100		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000400097		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000553597		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000390687		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000346403		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000554227		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000577565		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
intron-intron	ENST00000530916	ENST00000444203		ChiTaRS3.1			BU609006	TEX26	chr13	31548983	-	SNRPN	chr15	25247443	+
In-frame	ENST00000238571	ENST00000238571		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
In-frame	ENST00000238571	ENST00000325680		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
5CDS-intron	ENST00000238571	ENST00000552421		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
5CDS-intron	ENST00000238571	ENST00000546901		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
In-frame	ENST00000325680	ENST00000238571		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
In-frame	ENST00000325680	ENST00000325680		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
5CDS-intron	ENST00000325680	ENST00000552421		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
5CDS-intron	ENST00000325680	ENST00000546901		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-3CDS	ENST00000552421	ENST00000238571		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-3CDS	ENST00000552421	ENST00000325680		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-intron	ENST00000552421	ENST00000552421		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-intron	ENST00000552421	ENST00000546901		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-3CDS	ENST00000546901	ENST00000238571		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-3CDS	ENST00000546901	ENST00000325680		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-intron	ENST00000546901	ENST00000552421		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-intron	ENST00000546901	ENST00000546901		ChiTaRS3.1			BI018976	YLPM1	chr14	75265090	+	YLPM1	chr14	75265292	-
intron-intron	ENST00000335953	ENST00000335953		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000335953	ENST00000392996		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000335953	ENST00000535379		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000335953		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000392996		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000535379		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000335953		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000392996		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000535379		ChiTaRS3.1			AW973946	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-3UTR	ENST00000405694	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000405694	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000405694	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-intron	ENST00000405694	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000405694	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000405694	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-intron	ENST00000405694	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368607	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368607	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368607	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368607	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368607	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368607	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368607	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000271889	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000271889	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000271889	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000271889	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000271889	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000271889	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000271889	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368601	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368601	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368601	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368601	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368601	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368601	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368601	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368603	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368603	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368603	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368603	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368603	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368603	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368603	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368600	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368600	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368600	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368600	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368600	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-3UTR	ENST00000368600	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
5CDS-intron	ENST00000368600	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000468845	ENST00000405694		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000468845	ENST00000368607		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000468845	ENST00000271889		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-intron	ENST00000468845	ENST00000368601		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000468845	ENST00000368603		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3UTR	ENST00000468845	ENST00000368600		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-intron	ENST00000468845	ENST00000468845		ChiTaRS3.1			AI620796	CREB3L4	chr1	153941516	-	CREB3L4	chr1	153946639	-
intron-3CDS	ENST00000380649	ENST00000380649		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000380649	ENST00000457468		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000380649	ENST00000461025		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-3CDS	ENST00000457468	ENST00000380649		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000457468	ENST00000457468		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000457468	ENST00000461025		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-3CDS	ENST00000461025	ENST00000380649		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000461025	ENST00000457468		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-intron	ENST00000461025	ENST00000461025		ChiTaRS3.1			BQ330936	HADHA	chr2	26417980	-	HADHA	chr2	26416589	+
intron-3CDS	ENST00000279230	ENST00000379312		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000279230	ENST00000566522		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000279230	ENST00000042381		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000279230	ENST00000540839		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000279230	ENST00000422602		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000279230	ENST00000428437		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-3CDS	ENST00000540288	ENST00000379312		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000540288	ENST00000566522		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000540288	ENST00000042381		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000540288	ENST00000540839		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000540288	ENST00000422602		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000540288	ENST00000428437		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-3CDS	ENST00000325234	ENST00000379312		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000325234	ENST00000566522		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000325234	ENST00000042381		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000325234	ENST00000540839		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000325234	ENST00000422602		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
intron-intron	ENST00000325234	ENST00000428437		ChiTaRS3.1			AA323946	PLCB3	chr11	64032217	+	FAM65A	chr16	67576722	+
3UTR-5UTR	ENST00000389120	ENST00000230538		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-5UTR	ENST00000389120	ENST00000522006		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-5UTR	ENST00000389120	ENST00000389463		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-intron	ENST00000389120	ENST00000424408		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-intron	ENST00000389120	ENST00000524032		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-intron	ENST00000389120	ENST00000431543		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-intron	ENST00000389120	ENST00000368638		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
3UTR-intron	ENST00000389120	ENST00000453937		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-5UTR	ENST00000481046	ENST00000230538		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-5UTR	ENST00000481046	ENST00000522006		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-5UTR	ENST00000481046	ENST00000389463		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000481046	ENST00000424408		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000481046	ENST00000524032		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000481046	ENST00000431543		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000481046	ENST00000368638		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000481046	ENST00000453937		ChiTaRS3.1			U77706	RNF20	chr9	104325520	-	LAMA4	chr6	112575797	-
intron-intron	ENST00000263441	ENST00000331683		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000374309		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000432529		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000413312		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000272898		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000447990		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000263441	ENST00000414961		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000331683		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000374309		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000432529		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000413312		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000272898		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000447990		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000395325	ENST00000414961		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000331683		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000374309		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000432529		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000413312		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000272898		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000447990		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000371069	ENST00000414961		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000331683		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000374309		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000432529		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000413312		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000272898		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000447990		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
intron-intron	ENST00000498720	ENST00000414961		ChiTaRS3.1			CV343756	DNAJC6	chr1	65839116	+	SPAG16	chr2	214177010	+
5CDS-3UTR	ENST00000264832	ENST00000429586		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
5CDS-3UTR	ENST00000264832	ENST00000292808		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
5CDS-3UTR	ENST00000423829	ENST00000429586		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
5CDS-3UTR	ENST00000423829	ENST00000292808		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
intron-3UTR	ENST00000585443	ENST00000429586		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
intron-3UTR	ENST00000585443	ENST00000292808		ChiTaRS3.1			BF916346	ICAM1	chr19	10395869	-	ABCF3	chr3	183911712	+
3UTR-3UTR	ENST00000226574	ENST00000226574		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000394820		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000505458		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000226574	ENST00000510638		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000226574	ENST00000600343		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000226574		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000394820		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000505458		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-intron	ENST00000394820	ENST00000510638		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000394820	ENST00000600343		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000226574		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000394820		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000505458		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000505458	ENST00000510638		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000505458	ENST00000600343		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000226574		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000394820		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000505458		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-intron	ENST00000510638	ENST00000510638		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3UTR	ENST00000510638	ENST00000600343		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000226574		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000394820		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000505458		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-intron	ENST00000600343	ENST00000510638		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
3UTR-3UTR	ENST00000600343	ENST00000600343		ChiTaRS3.1			CA313276	NFKB1	chr4	103538082	-	NFKB1	chr4	103537757	+
intron-3CDS	ENST00000397542	ENST00000228284		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000397542	ENST00000431469		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000397542	ENST00000552221		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000397542	ENST00000546611		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000358353	ENST00000228284		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000358353	ENST00000431469		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000358353	ENST00000552221		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000358353	ENST00000546611		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000349570	ENST00000228284		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000349570	ENST00000431469		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000349570	ENST00000552221		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000349570	ENST00000546611		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000529337	ENST00000228284		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-3CDS	ENST00000529337	ENST00000431469		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000529337	ENST00000552221		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
intron-intron	ENST00000529337	ENST00000546611		ChiTaRS3.1			BG979986	CDHR5	chr11	621218	+	SART3	chr12	108919999	+
3UTR-3UTR	ENST00000369066	ENST00000369066		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
3UTR-intron	ENST00000369066	ENST00000535438		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
3UTR-intron	ENST00000369066	ENST00000487681		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-3UTR	ENST00000535438	ENST00000369066		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-intron	ENST00000535438	ENST00000535438		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-intron	ENST00000535438	ENST00000487681		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-3UTR	ENST00000487681	ENST00000369066		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-intron	ENST00000487681	ENST00000535438		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-intron	ENST00000487681	ENST00000487681		ChiTaRS3.1			CA438996	AIM1	chr6	107017601	+	AIM1	chr6	107017675	-
intron-intron	ENST00000328965	ENST00000354532		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000328965	ENST00000599846		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000328965	ENST00000596957		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000328965	ENST00000347545		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000328965	ENST00000378152		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000328965	ENST00000337665		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000354532		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000599846		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000596957		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000347545		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000378152		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000531220	ENST00000337665		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000354532		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000599846		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000596957		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000347545		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000378152		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-intron	ENST00000534735	ENST00000337665		ChiTaRS3.1			BQ373966	OAF	chr11	120097494	-	ARHGEF1	chr19	42421352	+
intron-3UTR	ENST00000372733	ENST00000372733		ChiTaRS3.1			BQ312086	SDC4	chr20	43955655	-	SDC4	chr20	43955777	+
intron-3UTR	ENST00000372733	ENST00000537976		ChiTaRS3.1			BQ312086	SDC4	chr20	43955655	-	SDC4	chr20	43955777	+
intron-3UTR	ENST00000537976	ENST00000372733		ChiTaRS3.1			BQ312086	SDC4	chr20	43955655	-	SDC4	chr20	43955777	+
intron-3UTR	ENST00000537976	ENST00000537976		ChiTaRS3.1			BQ312086	SDC4	chr20	43955655	-	SDC4	chr20	43955777	+
intron-intron	ENST00000268251	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000268251	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000268251	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000396600	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000396600	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000396600	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000563215	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000563215	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000563215	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000567812	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000567812	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000567812	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000425191	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000425191	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000425191	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000569156	ENST00000356126		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000569156	ENST00000357146		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-5UTR	ENST00000569156	ENST00000581618		ChiTaRS3.1			BF064196	ABAT	chr16	8865884	-	PSMD12	chr17	65351510	+
intron-intron	ENST00000354817	ENST00000354817		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000527202		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000532502		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000354817		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000527202		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000532502		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000354817		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000527202		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000532502		ChiTaRS3.1			BI019366	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-3UTR	ENST00000455304	ENST00000352131		ChiTaRS3.1			BF056046	LINC00466	chr1	63635878	+	RFC2	chr7	73646299	+
intron-3UTR	ENST00000455304	ENST00000055077		ChiTaRS3.1			BF056046	LINC00466	chr1	63635878	+	RFC2	chr7	73646299	+
intron-3CDS	ENST00000438576	ENST00000358933		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-intron	ENST00000438576	ENST00000574770		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-3CDS	ENST00000449692	ENST00000358933		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-intron	ENST00000449692	ENST00000574770		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-3CDS	ENST00000530188	ENST00000358933		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-intron	ENST00000530188	ENST00000574770		ChiTaRS3.1			BF961366	C11orf68	chr11	65684545	+	EDC4	chr16	67916607	+
intron-5UTR	ENST00000390168	ENST00000229239		ChiTaRS3.1			BC011866	H19	chr11	2017901	+	GAPDH	chr12	6643711	+
intron-5UTR	ENST00000390168	ENST00000396856		ChiTaRS3.1			BC011866	H19	chr11	2017901	+	GAPDH	chr12	6643711	+
intron-5UTR	ENST00000390168	ENST00000396861		ChiTaRS3.1			BC011866	H19	chr11	2017901	+	GAPDH	chr12	6643711	+
intron-intron	ENST00000390168	ENST00000396859		ChiTaRS3.1			BC011866	H19	chr11	2017901	+	GAPDH	chr12	6643711	+
intron-intron	ENST00000390168	ENST00000396858		ChiTaRS3.1			BC011866	H19	chr11	2017901	+	GAPDH	chr12	6643711	+
3UTR-3UTR	ENST00000394196	ENST00000394196		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
3UTR-intron	ENST00000394196	ENST00000557381		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
3UTR-intron	ENST00000394196	ENST00000420239		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
3UTR-intron	ENST00000394196	ENST00000536619		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
3UTR-intron	ENST00000394196	ENST00000554122		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-3UTR	ENST00000557381	ENST00000394196		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000557381	ENST00000557381		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000557381	ENST00000420239		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000557381	ENST00000536619		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000557381	ENST00000554122		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-3UTR	ENST00000420239	ENST00000394196		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000420239	ENST00000557381		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000420239	ENST00000420239		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000420239	ENST00000536619		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000420239	ENST00000554122		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-3UTR	ENST00000536619	ENST00000394196		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000536619	ENST00000557381		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000536619	ENST00000420239		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000536619	ENST00000536619		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000536619	ENST00000554122		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-3UTR	ENST00000554122	ENST00000394196		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000554122	ENST00000557381		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000554122	ENST00000420239		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000554122	ENST00000536619		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
intron-intron	ENST00000554122	ENST00000554122		ChiTaRS3.1			AI909166	CHD2	chr15	93569884	-	CHD2	chr15	93570051	+
Frame-shit	ENST00000262982	ENST00000262982		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000262982	ENST00000542325		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000262982	ENST00000396192		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
5CDS-3UTR	ENST00000262982	ENST00000469700		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000542325	ENST00000262982		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000542325	ENST00000542325		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000542325	ENST00000396192		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
5CDS-3UTR	ENST00000542325	ENST00000469700		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000396192	ENST00000262982		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000396192	ENST00000542325		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
Frame-shit	ENST00000396192	ENST00000396192		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
5CDS-3UTR	ENST00000396192	ENST00000469700		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
3UTR-3CDS	ENST00000469700	ENST00000262982		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
3UTR-3CDS	ENST00000469700	ENST00000542325		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
3UTR-3CDS	ENST00000469700	ENST00000396192		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
3UTR-3UTR	ENST00000469700	ENST00000469700		ChiTaRS3.1			BU074286	CSE1L	chr20	47712949	+	CSE1L	chr20	47711357	-
3UTR-3UTR	ENST00000353703	ENST00000353703		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-intron	ENST00000353703	ENST00000479421		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-3UTR	ENST00000479421	ENST00000353703		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-intron	ENST00000479421	ENST00000479421		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000372839	ENST00000353703		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-intron	ENST00000372839	ENST00000479421		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			BE547046	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807836	UBE2V1	chr20	48709820	-	UBE2V1	chr20	48710193	-
3UTR-3UTR	ENST00000270642	ENST00000372524		ChiTaRS3.1			BU730256	IGLON5	chr19	51832239	+	ZNF503	chr10	77158319	-
3UTR-3UTR	ENST00000270642	ENST00000535216		ChiTaRS3.1			BU730256	IGLON5	chr19	51832239	+	ZNF503	chr10	77158319	-
intron-intron	ENST00000540306	ENST00000393651		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000540306	ENST00000357311		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000540306	ENST00000489828		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000540306	ENST00000493638		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000262415	ENST00000393651		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000262415	ENST00000357311		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000262415	ENST00000489828		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
intron-intron	ENST00000262415	ENST00000493638		ChiTaRS3.1			AW364116	DHX8	chr17	41598101	-	SRPK2	chr7	104920382	-
5CDS-intron	ENST00000361204	ENST00000238112		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
5CDS-intron	ENST00000361204	ENST00000460593		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
5CDS-intron	ENST00000361204	ENST00000489403		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000238112		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000460593		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
3UTR-intron	ENST00000491541	ENST00000489403		ChiTaRS3.1			BI196066	SREBF2	chr22	42298986	-	CPSF3	chr2	9608103	-
intron-intron	ENST00000464233	ENST00000464233		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000464233	ENST00000436010		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000464233	ENST00000495273		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000464233	ENST00000467549		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000464233	ENST00000466906		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000436010	ENST00000464233		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000436010	ENST00000436010		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000436010	ENST00000495273		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000436010	ENST00000467549		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000436010	ENST00000466906		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000495273	ENST00000464233		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000495273	ENST00000436010		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000495273	ENST00000495273		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000495273	ENST00000467549		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000495273	ENST00000466906		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000467549	ENST00000464233		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000467549	ENST00000436010		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000467549	ENST00000495273		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000467549	ENST00000467549		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000467549	ENST00000466906		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000466906	ENST00000464233		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000466906	ENST00000436010		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000466906	ENST00000495273		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000466906	ENST00000467549		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000466906	ENST00000466906		ChiTaRS3.1			BX101366	ROBO1	chr3	78908146	-	ROBO1	chr3	78910325	-
intron-intron	ENST00000329957	ENST00000274456		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000329957	ENST00000513374		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000329957	ENST00000504771		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000329957	ENST00000503646		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000329957	ENST00000504642		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000329957	ENST00000415806		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000274456		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000513374		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000504771		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000503646		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000504642		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
intron-intron	ENST00000526462	ENST00000415806		ChiTaRS3.1			BF868816	MOB2	chr11	1774494	+	TNFAIP8	chr5	118704541	+
5UTR-intron	ENST00000267103	ENST00000267103		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
5UTR-intron	ENST00000267103	ENST00000548632		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
5UTR-intron	ENST00000267103	ENST00000549488		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000267103		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000548632		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000548632	ENST00000549488		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000267103		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000548632		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000549488	ENST00000549488		ChiTaRS3.1			CB046466	C12orf10	chr12	53693503	-	C12orf10	chr12	53693868	-
intron-intron	ENST00000421745	ENST00000421745		ChiTaRS3.1			BF814796	BIRC6	chr2	32731898	-	BIRC6	chr2	32731469	+
5CDS-intron	ENST00000344147	ENST00000360057		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000344147	ENST00000538212		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000344147	ENST00000549981		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000344147	ENST00000378099		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000344147	ENST00000547966		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
3UTR-intron	ENST00000479629	ENST00000360057		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
3UTR-intron	ENST00000479629	ENST00000538212		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
3UTR-intron	ENST00000479629	ENST00000549981		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
3UTR-intron	ENST00000479629	ENST00000378099		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
3UTR-intron	ENST00000479629	ENST00000547966		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000373714	ENST00000360057		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000373714	ENST00000538212		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000373714	ENST00000549981		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000373714	ENST00000378099		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000373714	ENST00000547966		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000546109	ENST00000360057		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000546109	ENST00000538212		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000546109	ENST00000549981		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000546109	ENST00000378099		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000546109	ENST00000547966		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000422613	ENST00000360057		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000422613	ENST00000538212		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000422613	ENST00000549981		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000422613	ENST00000378099		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
5CDS-intron	ENST00000422613	ENST00000547966		ChiTaRS3.1			EC547646	ZCCHC17	chr1	31819530	-	TPK1	chr7	144271457	+
intron-3UTR	ENST00000379471	ENST00000379471		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000379471	ENST00000464829		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000379471	ENST00000455041		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-3UTR	ENST00000464829	ENST00000379471		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000464829	ENST00000464829		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000464829	ENST00000455041		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-3UTR	ENST00000455041	ENST00000379471		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000455041	ENST00000464829		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000455041	ENST00000455041		ChiTaRS3.1			AA496406	NOL6	chr9	33462305	+	NOL6	chr9	33462085	-
intron-intron	ENST00000518852	ENST00000276297		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000358919		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000512044		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000316609		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000511869		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000510318		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000518852	ENST00000520226		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000276297		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000358919		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000512044		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000316609		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000511869		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000510318		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000240139	ENST00000520226		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000276297		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000358919		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000512044		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000316609		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000511869		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000510318		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000289963	ENST00000520226		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000276297		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000358919		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000512044		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000316609		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000511869		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000510318		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000397775	ENST00000520226		ChiTaRS3.1			BF358436	PPP3CC	chr8	22392911	+	DLC1	chr8	12959874	-
intron-intron	ENST00000262812	ENST00000296440		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000262812	ENST00000358459		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000262812	ENST00000358536		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000262812	ENST00000448774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000262812	ENST00000456774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000262812	ENST00000465117		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000296440		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000358459		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000358536		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000448774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000456774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000349893	ENST00000465117		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000296440		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000358459		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000358536		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000448774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000456774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000600932	ENST00000465117		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000296440		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000358459		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000358536		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000448774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000456774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000598969	ENST00000465117		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000296440		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000358459		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000358536		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000448774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000456774		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000351079	ENST00000465117		ChiTaRS3.1			AK126476	COPE	chr19	19010391	-	PLXNB1	chr3	48448371	-
intron-intron	ENST00000421834	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000421834	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370769	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000312431	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370754	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370788	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000361203	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000244364	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000446842	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000340834	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000370765	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000421834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000370769		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000312431		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000370754		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000370788		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000361203		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000244364		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000446842		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000340834		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000370765		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-intron	ENST00000518935	ENST00000518935		ChiTaRS3.1			BG989836	DST	chr6	56493983	-	DST	chr6	56493948	+
intron-3UTR	ENST00000239231	ENST00000233143		ChiTaRS3.1			BU165536	PANK3	chr5	167979389	-	TMSB10	chr2	85133687	+
intron-3UTR	ENST00000520504	ENST00000233143		ChiTaRS3.1			BU165536	PANK3	chr5	167979389	-	TMSB10	chr2	85133687	+
intron-5UTR	ENST00000256404	ENST00000404233		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000256404	ENST00000529972		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000256404	ENST00000525859		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000256404	ENST00000543287		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000521284	ENST00000404233		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000521284	ENST00000529972		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000521284	ENST00000525859		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
intron-5UTR	ENST00000521284	ENST00000543287		ChiTaRS3.1			DA760206	PEBP4	chr8	22647040	-	HYOU1	chr11	118927764	-
5UTR-3CDS	ENST00000379540	ENST00000379540		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-3CDS	ENST00000379540	ENST00000379521		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-3CDS	ENST00000379540	ENST00000318524		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-intron	ENST00000379540	ENST00000463421		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-3CDS	ENST00000379521	ENST00000379540		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-3CDS	ENST00000379521	ENST00000379521		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-3CDS	ENST00000379521	ENST00000318524		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
5UTR-intron	ENST00000379521	ENST00000463421		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000318524	ENST00000379540		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000318524	ENST00000379521		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000318524	ENST00000318524		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-intron	ENST00000318524	ENST00000463421		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000463421	ENST00000379540		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000463421	ENST00000379521		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-3CDS	ENST00000463421	ENST00000318524		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-intron	ENST00000463421	ENST00000463421		ChiTaRS3.1			U15306	NFX1	chr9	33290538	-	NFX1	chr9	33294534	+
intron-intron	ENST00000432648	ENST00000432648		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000432648	ENST00000446189		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000432648	ENST00000372984		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000446189	ENST00000432648		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000446189	ENST00000446189		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000446189	ENST00000372984		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000372984	ENST00000432648		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000372984	ENST00000446189		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-intron	ENST00000372984	ENST00000372984		ChiTaRS3.1			CB987276	AKIRIN1	chr1	39458449	-	AKIRIN1	chr1	39457675	+
intron-3CDS	ENST00000379261	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000379261	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000379261	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000379261	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000379261	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000379261	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000379261	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000416382	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000416382	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000450189	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000450189	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000542579	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000542579	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000399850	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000399850	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000417956	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000417956	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354440	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000354440	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000427450	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000427450	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000315874	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000315874	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000608830	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000608830	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000609692	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000609692	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000354897	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000354897	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000325006		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000446544		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000531335		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000474594		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000446212		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-3CDS	ENST00000537122	ENST00000490911		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000537122	ENST00000472554		ChiTaRS3.1			DB138706	CELF2	chr10	11259477	+	AHCYL2	chr7	129062680	+
intron-intron	ENST00000377038	ENST00000323116		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
intron-intron	ENST00000377038	ENST00000493826		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
intron-intron	ENST00000377038	ENST00000482794		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
intron-intron	ENST00000377036	ENST00000323116		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
intron-intron	ENST00000377036	ENST00000493826		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
intron-intron	ENST00000377036	ENST00000482794		ChiTaRS3.1			CN266606	DFFA	chr1	10521256	-	ATP11B	chr3	182575205	+
In-frame	ENST00000409709	ENST00000409709		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409709	ENST00000409893		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409709	ENST00000458637		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409709	ENST00000409619		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-3UTR	ENST00000409709	ENST00000605744		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-3CDS	ENST00000409893	ENST00000409709		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-intron	ENST00000409893	ENST00000409893		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-intron	ENST00000409893	ENST00000458637		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-intron	ENST00000409893	ENST00000409619		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-3UTR	ENST00000409893	ENST00000605744		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
In-frame	ENST00000458637	ENST00000409709		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000458637	ENST00000409893		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000458637	ENST00000458637		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000458637	ENST00000409619		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-3UTR	ENST00000458637	ENST00000605744		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
In-frame	ENST00000409619	ENST00000409709		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409619	ENST00000409893		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409619	ENST00000458637		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-intron	ENST00000409619	ENST00000409619		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
5CDS-3UTR	ENST00000409619	ENST00000605744		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
3UTR-3CDS	ENST00000605744	ENST00000409709		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
3UTR-intron	ENST00000605744	ENST00000409893		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
3UTR-intron	ENST00000605744	ENST00000458637		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
3UTR-intron	ENST00000605744	ENST00000409619		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
3UTR-3UTR	ENST00000605744	ENST00000605744		ChiTaRS3.1			BI050206	MYO7A	chr11	76918377	-	MYO7A	chr11	76922267	+
intron-intron	ENST00000598205	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000598205	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000598205	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000598205	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000598205	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000376970	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000376970	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000376970	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000376970	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000376970	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000425460	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000425460	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000425460	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000425460	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000425460	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000440075	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000440075	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000440075	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000440075	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000440075	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000601313	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000601313	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000601313	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000601313	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000601313	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000262269	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000262269	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000262269	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000262269	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000262269	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000596571	ENST00000370345		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000596571	ENST00000494350		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000596571	ENST00000451524		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000596571	ENST00000535773		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-intron	ENST00000596571	ENST00000370329		ChiTaRS3.1			BE149136	MYH14	chr19	50807461	-	SEC31B	chr10	102281741	+
intron-5UTR	ENST00000372555	ENST00000372555		ChiTaRS3.1			BF672376	TNNC2	chr20	44451937	-	TNNC2	chr20	44455938	-
intron-intron	ENST00000372555	ENST00000372557		ChiTaRS3.1			BF672376	TNNC2	chr20	44451937	-	TNNC2	chr20	44455938	-
intron-5UTR	ENST00000372557	ENST00000372555		ChiTaRS3.1			BF672376	TNNC2	chr20	44451937	-	TNNC2	chr20	44455938	-
intron-intron	ENST00000372557	ENST00000372557		ChiTaRS3.1			BF672376	TNNC2	chr20	44451937	-	TNNC2	chr20	44455938	-
intron-intron	ENST00000412585	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000412585	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000412585	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000412585	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000412585	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000412585	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000425848	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000425848	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000425848	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000425848	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000425848	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000425848	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000450871	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000450871	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000450871	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000450871	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000450871	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000450871	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000359635	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000359635	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000359635	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000359635	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000359635	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000359635	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000435618	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000435618	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000435618	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000435618	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000435618	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000435618	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000421349	ENST00000412585		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3UTR	ENST00000421349	ENST00000425848		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000421349	ENST00000450871		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000421349	ENST00000359635		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000421349	ENST00000435618		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-intron	ENST00000421349	ENST00000421349		ChiTaRS3.1			BF909066	HLA-B	chr6	2656056	+	HLA-B	chr6	2834598	-
intron-3CDS	ENST00000358901	ENST00000358901		ChiTaRS3.1			T23066	VCP	chr9	35062310	+	VCP	chr9	35062271	-
3UTR-3UTR	ENST00000372126	ENST00000375990		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
3UTR-3UTR	ENST00000372126	ENST00000259253		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
3UTR-intron	ENST00000372126	ENST00000465836		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
3UTR-3UTR	ENST00000472542	ENST00000375990		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
3UTR-3UTR	ENST00000472542	ENST00000259253		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
3UTR-intron	ENST00000472542	ENST00000465836		ChiTaRS3.1			AK025416	C10orf99	chr10	85944737	+	UGGT1	chr2	128951780	+
intron-intron	ENST00000380121	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
intron-intron	ENST00000380121	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000504114	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000504114	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000357505	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000357505	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000399396	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000399396	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000446957	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
5CDS-intron	ENST00000446957	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
intron-intron	ENST00000267068	ENST00000286657		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
intron-intron	ENST00000267068	ENST00000505193		ChiTaRS3.1			BQ332326	N4BP2L2	chr13	33091994	-	ADAMTS3	chr4	73284970	-
intron-intron	ENST00000321556	ENST00000445552		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000337845		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000329240		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000573185		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000570550		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000336125		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000549904		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000550273		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000549665		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000321556	ENST00000553155		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000445552		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000337845		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000329240		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000573185		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000570550		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000336125		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000549904		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000550273		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000549665		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000492302	ENST00000553155		ChiTaRS3.1			AI174936	PINK1	chr1	20961633	-	ARL17A	chr17	1513789	-
intron-intron	ENST00000532984	ENST00000532984		ChiTaRS3.1			BQ771776	FXYD6-FXYD2	chr11	117709425	+	FXYD6-FXYD2	chr11	117708679	+
intron-intron	ENST00000253408	ENST00000265394		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000396276		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000409850		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000488891		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000265394		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000396276		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000409850		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000488891		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000265394		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000396276		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000409850		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000488891		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000265394		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000396276		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000409850		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000488891		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000265394		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000396276		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000409850		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000488891		ChiTaRS3.1			L29126	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
Frame-shit	ENST00000264170	ENST00000264170		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000264170	ENST00000375773		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000264170	ENST00000409512		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
5CDS-intron	ENST00000264170	ENST00000410015		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000375773	ENST00000264170		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000375773	ENST00000375773		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000375773	ENST00000409512		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
5CDS-intron	ENST00000375773	ENST00000410015		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000409512	ENST00000264170		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000409512	ENST00000375773		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
Frame-shit	ENST00000409512	ENST00000409512		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
5CDS-intron	ENST00000409512	ENST00000410015		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
intron-3CDS	ENST00000410015	ENST00000264170		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
intron-3CDS	ENST00000410015	ENST00000375773		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
intron-3CDS	ENST00000410015	ENST00000409512		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
intron-intron	ENST00000410015	ENST00000410015		ChiTaRS3.1			BF907726	KYNU	chr2	143743591	+	KYNU	chr2	143712379	+
intron-intron	ENST00000527174	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000527174	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000534028	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000377152	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000398802	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000360662	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000294187	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000417511	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000303635		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000439411		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000476163		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000557126		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000473578		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000467404		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000526432	ENST00000476864		ChiTaRS3.1			BU930096	SLC25A45	chr11	65149456	-	CAMTA1	chr1	6988111	+
intron-intron	ENST00000261405	ENST00000193403		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000261405	ENST00000394419		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000261405	ENST00000438964		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000261405	ENST00000376839		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000261405	ENST00000538545		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000261405	ENST00000554508		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000193403		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000394419		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000438964		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000376839		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000538545		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000572068	ENST00000554508		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000193403		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000394419		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000438964		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000376839		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000538545		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000545906	ENST00000554508		ChiTaRS3.1			AA327436	VWF	chr12	6092379	-	ACTN1	chr14	69392415	-
intron-intron	ENST00000346329	ENST00000393518		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000346329	ENST00000510276		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000346329	ENST00000503136		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000346329	ENST00000440605		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000346329	ENST00000513554		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000301843	ENST00000393518		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000301843	ENST00000510276		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000301843	ENST00000503136		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000301843	ENST00000440605		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000301843	ENST00000513554		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000527622	ENST00000393518		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000527622	ENST00000510276		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000527622	ENST00000503136		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000527622	ENST00000440605		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000527622	ENST00000513554		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000376561	ENST00000393518		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000376561	ENST00000510276		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000376561	ENST00000503136		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000376561	ENST00000440605		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000376561	ENST00000513554		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000538675	ENST00000393518		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000538675	ENST00000510276		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000538675	ENST00000503136		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000538675	ENST00000440605		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000538675	ENST00000513554		ChiTaRS3.1			AW388086	CTTN	chr11	70274881	-	FAM153A	chr5	177138855	+
intron-intron	ENST00000457351	ENST00000457351		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000457351	ENST00000296487		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000457351	ENST00000323588		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000457351	ENST00000409502		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000296487	ENST00000457351		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000296487	ENST00000296487		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000296487	ENST00000323588		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000296487	ENST00000409502		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000323588	ENST00000457351		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000323588	ENST00000296487		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000323588	ENST00000323588		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000323588	ENST00000409502		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000409502	ENST00000457351		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000409502	ENST00000296487		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000409502	ENST00000323588		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000409502	ENST00000409502		ChiTaRS3.1			CR981976	PPM1M	chr3	52280467	+	PPM1M	chr3	52280625	-
intron-intron	ENST00000484457	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000484457	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538892	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000283627	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000538181	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000446237	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000507198	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000484457		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000538892		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000283627		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000538181		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000446237		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000507198		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000542085	ENST00000542085		ChiTaRS3.1			AW752436	FBXL2	chr3	33430929	+	FBXL2	chr3	33430554	+
intron-intron	ENST00000540275	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000540275	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000540275	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000540275	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000540275	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000540275	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000452085	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000537543	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000331677	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000359564	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000540275		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000452085		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000537543		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000331677		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000359564		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000606265	ENST00000606265		ChiTaRS3.1			AA557756	DSE	chr6	116599216	-	DSE	chr6	116599435	+
intron-intron	ENST00000368226	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368226	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368226	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368226	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368226	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368227	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368227	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368227	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368227	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368227	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000532331	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000532331	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000532331	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000532331	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000532331	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368213	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368213	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368213	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368213	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368213	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368210	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368210	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368210	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368210	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368210	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368215	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368215	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368215	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368215	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368215	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368207	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368207	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368207	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368207	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000368207	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000524481	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000524481	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000524481	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000524481	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000524481	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000525459	ENST00000419821		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000525459	ENST00000392533		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000525459	ENST00000537952		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000525459	ENST00000543709		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-intron	ENST00000525459	ENST00000536979		ChiTaRS3.1			AK025196	PTPRK	chr6	128752086	-	TAOK3	chr12	118727098	+
intron-3CDS	ENST00000374706	ENST00000374746		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000374748		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000374749		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000374751		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000602371		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000374742		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000537177		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374706	ENST00000478044		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-3CDS	ENST00000265375	ENST00000374746		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000374748		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000374749		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000374751		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000602371		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000374742		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000537177		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000265375	ENST00000478044		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-3CDS	ENST00000339497	ENST00000374746		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000374748		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000374749		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000374751		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000602371		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000374742		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000537177		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000339497	ENST00000478044		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-3CDS	ENST00000374704	ENST00000374746		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000374748		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000374749		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000374751		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000602371		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000374742		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000537177		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000374704	ENST00000478044		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-3CDS	ENST00000492478	ENST00000374746		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000374748		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000374749		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000374751		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000602371		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000374742		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000537177		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-5UTR	ENST00000492478	ENST00000478044		ChiTaRS3.1			DB474006	CCNY	chr10	35636422	+	CUL2	chr10	35360267	-
intron-intron	ENST00000506722	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000506722		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000394537		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000357077		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000264366		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000509550		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000510275		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000504887		ChiTaRS3.1			AI758236	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-3UTR	ENST00000221431	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000221431	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000221431	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000221431	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000221431	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-intron	ENST00000221431	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000594171	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000594171	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000594171	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000594171	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-3UTR	ENST00000594171	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
5CDS-intron	ENST00000594171	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000430193	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000430193	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000430193	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000430193	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000430193	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-intron	ENST00000430193	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000598831	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000598831	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000598831	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000598831	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000598831	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-intron	ENST00000598831	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000448145	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000448145	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000448145	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000448145	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000448145	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-intron	ENST00000448145	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000600042	ENST00000221431		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000600042	ENST00000594171		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000600042	ENST00000430193		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000600042	ENST00000598831		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3UTR	ENST00000600042	ENST00000448145		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-intron	ENST00000600042	ENST00000600042		ChiTaRS3.1			AA630836	SARS2	chr19	39405908	-	SARS2	chr19	39406083	+
intron-3CDS	ENST00000347055	ENST00000347055		ChiTaRS3.1			AK025986	KRCC1	chr2	88327003	-	KRCC1	chr2	88327518	-
intron-3CDS	ENST00000540593	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
intron-3CDS	ENST00000540593	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
intron-intron	ENST00000540593	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
In-frame	ENST00000324593	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
Frame-shit	ENST00000324593	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
5CDS-intron	ENST00000324593	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
3UTR-3CDS	ENST00000412490	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
3UTR-3CDS	ENST00000412490	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
3UTR-intron	ENST00000412490	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
In-frame	ENST00000442160	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
Frame-shit	ENST00000442160	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
5CDS-intron	ENST00000442160	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
In-frame	ENST00000555044	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
Frame-shit	ENST00000555044	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
5CDS-intron	ENST00000555044	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
In-frame	ENST00000334521	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
Frame-shit	ENST00000334521	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
5CDS-intron	ENST00000334521	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
In-frame	ENST00000556797	ENST00000295633		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
Frame-shit	ENST00000556797	ENST00000424703		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
5CDS-intron	ENST00000556797	ENST00000485968		ChiTaRS3.1			DB252176	ZNF410	chr14	74363069	+	FSTL1	chr3	120115839	-
intron-intron	ENST00000273221	ENST00000399959		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000273221	ENST00000478993		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000273221	ENST00000457138		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000273221	ENST00000441189		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000273221	ENST00000542215		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000473088	ENST00000399959		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000473088	ENST00000478993		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000473088	ENST00000457138		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000473088	ENST00000441189		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000473088	ENST00000542215		ChiTaRS3.1			CD674186	IQSEC1	chr3	12978732	-	DDX3X	chrX	41200519	+
intron-intron	ENST00000376509	ENST00000376509		ChiTaRS3.1			AW364926	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000376509	ENST00000485431		ChiTaRS3.1			AW364926	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-intron	ENST00000485431	ENST00000376509		ChiTaRS3.1			AW364926	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
intron-5UTR	ENST00000485431	ENST00000485431		ChiTaRS3.1			AW364926	PIM2	chrX	48772528	+	PIM2	chrX	48772103	-
3UTR-3UTR	ENST00000537098	ENST00000537098		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000537098	ENST00000539778		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-intron	ENST00000537098	ENST00000566513		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000537098	ENST00000398040		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000539778	ENST00000537098		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000539778	ENST00000539778		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-intron	ENST00000539778	ENST00000566513		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000539778	ENST00000398040		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
intron-3UTR	ENST00000566513	ENST00000537098		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
intron-3UTR	ENST00000566513	ENST00000539778		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
intron-intron	ENST00000566513	ENST00000566513		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
intron-3UTR	ENST00000566513	ENST00000398040		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000398040	ENST00000537098		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000398040	ENST00000539778		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-intron	ENST00000398040	ENST00000566513		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-3UTR	ENST00000398040	ENST00000398040		ChiTaRS3.1			AW505506	CMIP	chr16	81743770	-	CMIP	chr16	81743853	+
3UTR-intron	ENST00000372523	ENST00000376447		ChiTaRS3.1			BF058356	ZSWIM1	chr20	44513648	-	RASEF	chr9	85673744	+
3UTR-intron	ENST00000372523	ENST00000340717		ChiTaRS3.1			BF058356	ZSWIM1	chr20	44513648	-	RASEF	chr9	85673744	+
3UTR-intron	ENST00000372520	ENST00000376447		ChiTaRS3.1			BF058356	ZSWIM1	chr20	44513648	-	RASEF	chr9	85673744	+
3UTR-intron	ENST00000372520	ENST00000340717		ChiTaRS3.1			BF058356	ZSWIM1	chr20	44513648	-	RASEF	chr9	85673744	+
intron-3CDS	ENST00000342085	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000342085	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000342085	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000342085	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000342085	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000441549	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000441549	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000441549	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000441549	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000441549	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000268673	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000268673	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000268673	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000268673	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000268673	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000354836	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000354836	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000354836	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000354836	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000354836	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000389224	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000389224	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000389224	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000389224	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000389224	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000471311	ENST00000526054		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000471311	ENST00000529182		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000471311	ENST00000377348		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-3CDS	ENST00000471311	ENST00000292510		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
intron-intron	ENST00000471311	ENST00000526734		ChiTaRS3.1			AK129716	PDPK1	chr16	2597923	+	VPS28	chr8	145650123	-
5CDS-3UTR	ENST00000331563	ENST00000331563		ChiTaRS3.1			CA450526	PKP3	chr11	400645	-	PKP3	chr11	404678	-
5CDS-intron	ENST00000331563	ENST00000530695		ChiTaRS3.1			CA450526	PKP3	chr11	400645	-	PKP3	chr11	404678	-
intron-3UTR	ENST00000530695	ENST00000331563		ChiTaRS3.1			CA450526	PKP3	chr11	400645	-	PKP3	chr11	404678	-
intron-intron	ENST00000530695	ENST00000530695		ChiTaRS3.1			CA450526	PKP3	chr11	400645	-	PKP3	chr11	404678	-
intron-intron	ENST00000219481	ENST00000322536		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000219481	ENST00000526794		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000219481	ENST00000534221		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000397710	ENST00000322536		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000397710	ENST00000526794		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000397710	ENST00000534221		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000424398	ENST00000322536		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000424398	ENST00000526794		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000424398	ENST00000534221		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000461947	ENST00000322536		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000461947	ENST00000526794		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-intron	ENST00000461947	ENST00000534221		ChiTaRS3.1			EL582516	DECR2	chr16	460179	-	DDX10	chr11	108727592	-
intron-3UTR	ENST00000409003	ENST00000481195		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
intron-intron	ENST00000409003	ENST00000231504		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
intron-3UTR	ENST00000314727	ENST00000481195		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
intron-intron	ENST00000314727	ENST00000231504		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
intron-3UTR	ENST00000527515	ENST00000481195		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
intron-intron	ENST00000527515	ENST00000231504		ChiTaRS3.1			AK124366	SAMD12	chr8	119271563	-	PPP2CA	chr5	133533005	-
3UTR-3CDS	ENST00000332556	ENST00000560403		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000419198		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-3CDS	ENST00000332556	ENST00000216799		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
3UTR-5UTR	ENST00000332556	ENST00000558200		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000560403		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000419198		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000397181	ENST00000216799		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000397181	ENST00000558200		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000560403		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000419198		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-3CDS	ENST00000471046	ENST00000216799		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-5UTR	ENST00000471046	ENST00000558200		ChiTaRS3.1			BF223156	LAMP1	chr13	113977650	-	EMC9	chr14	24608768	+
intron-intron	ENST00000274008	ENST00000274008		ChiTaRS3.1			DW430236	SPATA5	chr4	124127158	+	SPATA5	chr4	124126321	+
intron-intron	ENST00000274008	ENST00000422835		ChiTaRS3.1			DW430236	SPATA5	chr4	124127158	+	SPATA5	chr4	124126321	+
intron-intron	ENST00000422835	ENST00000274008		ChiTaRS3.1			DW430236	SPATA5	chr4	124127158	+	SPATA5	chr4	124126321	+
intron-intron	ENST00000422835	ENST00000422835		ChiTaRS3.1			DW430236	SPATA5	chr4	124127158	+	SPATA5	chr4	124126321	+
3UTR-3UTR	ENST00000372398	ENST00000372398		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-intron	ENST00000372398	ENST00000493042		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000372398	ENST00000458469		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-3UTR	ENST00000493042	ENST00000372398		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-intron	ENST00000493042	ENST00000493042		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-3UTR	ENST00000493042	ENST00000458469		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000458469	ENST00000372398		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-intron	ENST00000458469	ENST00000493042		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
3UTR-3UTR	ENST00000458469	ENST00000458469		ChiTaRS3.1			BE256096	NCS1	chr9	132998320	+	NCS1	chr9	132997416	+
intron-intron	ENST00000436428	ENST00000456972		ChiTaRS3.1			CN307746	MSMP	chr9	35754541	+	RGP1	chr9	35752920	+
intron-3UTR	ENST00000436428	ENST00000378078		ChiTaRS3.1			CN307746	MSMP	chr9	35754541	+	RGP1	chr9	35752920	+
intron-intron	ENST00000414286	ENST00000456972		ChiTaRS3.1			CN307746	MSMP	chr9	35754541	+	RGP1	chr9	35752920	+
intron-3UTR	ENST00000414286	ENST00000378078		ChiTaRS3.1			CN307746	MSMP	chr9	35754541	+	RGP1	chr9	35752920	+
intron-3CDS	ENST00000287600	ENST00000287600		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3UTR	ENST00000287600	ENST00000409772		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-intron	ENST00000287600	ENST00000477748		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3CDS	ENST00000409772	ENST00000287600		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3UTR	ENST00000409772	ENST00000409772		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-intron	ENST00000409772	ENST00000477748		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3CDS	ENST00000477748	ENST00000287600		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3UTR	ENST00000477748	ENST00000409772		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-intron	ENST00000477748	ENST00000477748		ChiTaRS3.1			AJ001626	PDE6D	chr2	232597635	-	PDE6D	chr2	232597697	+
intron-3CDS	ENST00000358825	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000358825	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000358825	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000358825	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000358825	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000358825	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000304538	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000304538	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000304538	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000304538	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000304538	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000304538	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000360871	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000360871	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000360871	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000360871	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000360871	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000360871	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000423662	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000423662	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000423662	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000423662	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000423662	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000423662	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000528746	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000528746	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000528746	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000528746	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000528746	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000528746	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000526082	ENST00000409895		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000526082	ENST00000409432		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000526082	ENST00000282412		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3CDS	ENST00000526082	ENST00000378551		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-3UTR	ENST00000526082	ENST00000378540		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
intron-intron	ENST00000526082	ENST00000345249		ChiTaRS3.1			DA528196	PRDM10	chr11	129795721	-	PPM1B	chr2	44428360	+
5CDS-intron	ENST00000311380	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000311380	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000311380	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000311380	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000311380	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000311380	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000375250	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375250	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000375250	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375250	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375250	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375250	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-intron	ENST00000492028	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-5UTR	ENST00000492028	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-intron	ENST00000492028	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-5UTR	ENST00000492028	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-5UTR	ENST00000492028	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-5UTR	ENST00000492028	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000344936	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000344936	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000344936	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000344936	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000344936	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000344936	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000396144	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000396144	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000396144	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000396144	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000396144	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000396144	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000375245	ENST00000311380		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375245	ENST00000375250		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-intron	ENST00000375245	ENST00000492028		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375245	ENST00000344936		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375245	ENST00000396144		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
5CDS-5UTR	ENST00000375245	ENST00000375245		ChiTaRS3.1			BF329236	ARHGAP12	chr10	32197098	-	ARHGAP12	chr10	32199492	-
intron-intron	ENST00000335953	ENST00000335953		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000335953	ENST00000392996		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000335953	ENST00000535379		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000335953		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000392996		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000392996	ENST00000535379		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000335953		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000392996		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-intron	ENST00000535379	ENST00000535379		ChiTaRS3.1			AA558546	ZBTB16	chr11	113958035	+	ZBTB16	chr11	113957986	-
intron-3UTR	ENST00000373755	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000373755	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373755	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373755	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373755	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373755	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000373755	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373754	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000373754	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373754	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373754	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373754	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000373754	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000373754	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000340587	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000340587	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000340587	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000340587	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000340587	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000340587	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000340587	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000394319	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000394319	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000394319	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000394319	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000394319	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000394319	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000394319	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559895	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000559895	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559895	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559895	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559895	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559895	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000559895	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000541397	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000541397	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000541397	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000541397	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000541397	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000541397	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000541397	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000464484	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000464484	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000464484	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000464484	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000464484	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000464484	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000464484	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000482062	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000482062	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000482062	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000482062	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000482062	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000482062	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000482062	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559529	ENST00000372989		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-5UTR	ENST00000559529	ENST00000491602		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559529	ENST00000454200		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559529	ENST00000276141		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559529	ENST00000455616		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000559529	ENST00000263033		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-intron	ENST00000559529	ENST00000372981		ChiTaRS3.1			DB295306	LHX6	chr9	124977432	+	SYTL4	chrX	99930904	+
intron-3UTR	ENST00000258729	ENST00000295702		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000258729	ENST00000529008		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000258729	ENST00000496742		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000258729	ENST00000480567		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000491719	ENST00000295702		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000491719	ENST00000529008		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000491719	ENST00000496742		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
intron-3UTR	ENST00000491719	ENST00000480567		ChiTaRS3.1			BF326256	IGF2BP3	chr7	23436312	-	SSR2	chr1	155979325	+
5CDS-intron	ENST00000371627	ENST00000335012		ChiTaRS3.1			DW433576	TNKS2	chr10	93619406	+	C3orf70	chr3	184863472	+
intron-intron	ENST00000367990	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000367990	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000468465	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000463812	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000470459	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000464492	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000411990		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367080		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000367079		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000545806		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000541914		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-intron	ENST00000491350	ENST00000473310		ChiTaRS3.1			AF090896	APOA2	chr1	161192731	+	PFKFB2	chr1	207222316	-
intron-3CDS	ENST00000318789	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000318789	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000318789	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000475937	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000475937	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000475937	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000493089	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000493089	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000493089	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000484350	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000484350	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000484350	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000318779	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000318779	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000318779	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000491238	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000491238	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000491238	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000498215	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000498215	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000498215	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000468577	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000468577	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000468577	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000472382	ENST00000358506		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000472382	ENST00000296122		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
intron-3CDS	ENST00000472382	ENST00000395366		ChiTaRS3.1			AL597156	FOXP1	chr3	71630550	-	PPP1CB	chr2	28999716	+
3UTR-3UTR	ENST00000253814	ENST00000253814		ChiTaRS3.1			AI242266	NDFIP1	chr5	141532274	-	NDFIP1	chr5	141532173	+
3UTR-intron	ENST00000253814	ENST00000509436		ChiTaRS3.1			AI242266	NDFIP1	chr5	141532274	-	NDFIP1	chr5	141532173	+
intron-3UTR	ENST00000509436	ENST00000253814		ChiTaRS3.1			AI242266	NDFIP1	chr5	141532274	-	NDFIP1	chr5	141532173	+
intron-intron	ENST00000509436	ENST00000509436		ChiTaRS3.1			AI242266	NDFIP1	chr5	141532274	-	NDFIP1	chr5	141532173	+
intron-intron	ENST00000577297	ENST00000577297		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000577297	ENST00000498979		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000577297	ENST00000500970		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000577297	ENST00000578923		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000577297	ENST00000530002		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000498979	ENST00000577297		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000498979	ENST00000498979		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000498979	ENST00000500970		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000498979	ENST00000578923		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000498979	ENST00000530002		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000500970	ENST00000577297		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000500970	ENST00000498979		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000500970	ENST00000500970		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000500970	ENST00000578923		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000500970	ENST00000530002		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000578923	ENST00000577297		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000578923	ENST00000498979		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000578923	ENST00000500970		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000578923	ENST00000578923		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000578923	ENST00000530002		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000530002	ENST00000577297		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000530002	ENST00000498979		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000530002	ENST00000500970		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000530002	ENST00000578923		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000530002	ENST00000530002		ChiTaRS3.1			R73026	USP2-AS1	chr11	119289587	+	USP2-AS1	chr11	119289538	-
intron-intron	ENST00000228495	ENST00000306385		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000228495	ENST00000354870		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000228495	ENST00000397816		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000228495	ENST00000306349		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000228495	ENST00000397814		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000228495	ENST00000523849		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000306385		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000354870		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000397816		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000306349		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000397814		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540089	ENST00000523849		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000306385		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000354870		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000397816		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000306349		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000397814		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000424763	ENST00000523849		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000306385		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000354870		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000397816		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000306349		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000397814		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000538161	ENST00000523849		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000306385		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000354870		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000397816		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000306349		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000397814		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-intron	ENST00000540411	ENST00000523849		ChiTaRS3.1			BQ370786	KCTD10	chr12	109888974	+	BMP1	chr8	22058394	-
intron-5UTR	ENST00000268125	ENST00000268125		ChiTaRS3.1			W28826	RLBP1	chr15	89762220	+	RLBP1	chr15	89762292	-
3UTR-intron	ENST00000347162	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000347162	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000347162	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000453940	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000453940	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000453940	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000458460	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000458460	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-intron	ENST00000458460	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000259708	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000259708	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000259708	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000479388	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000479388	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000479388	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394056	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394056	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394056	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394058	ENST00000336890		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394058	ENST00000333070		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
3UTR-intron	ENST00000394058	ENST00000373564		ChiTaRS3.1			AA778926	KLC4	chr6	43042760	-	LCK	chr1	32719134	-
intron-3CDS	ENST00000267970	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000267970	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000267970	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000267970	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000267970	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000267970	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000267970	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000346495	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000346495	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000346495	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000346495	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000346495	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000346495	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000346495	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000424443	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000424443	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000424443	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000424443	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000424443	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000424443	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000424443	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000561277	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000561277	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000561277	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000561277	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000561277	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000561277	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000561277	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000559494	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000559494	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000559494	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000559494	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000559494	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000559494	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000559494	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558745	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558745	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558745	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558745	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558745	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558745	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000558745	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558394	ENST00000267970		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558394	ENST00000346495		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3CDS	ENST00000558394	ENST00000424443		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558394	ENST00000561277		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558394	ENST00000559494		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-5UTR	ENST00000558394	ENST00000558745		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-intron	ENST00000558394	ENST00000558394		ChiTaRS3.1			W28286	TSPAN3	chr15	77348559	+	TSPAN3	chr15	77344793	-
intron-3UTR	ENST00000302102	ENST00000244745		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-intron	ENST00000302102	ENST00000543472		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-3UTR	ENST00000545399	ENST00000244745		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-intron	ENST00000545399	ENST00000543472		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-3UTR	ENST00000543770	ENST00000244745		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-intron	ENST00000543770	ENST00000543472		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-3UTR	ENST00000602133	ENST00000244745		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-intron	ENST00000602133	ENST00000543472		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-3UTR	ENST00000468774	ENST00000244745		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-intron	ENST00000468774	ENST00000543472		ChiTaRS3.1			BX478866	ATP1A3	chr19	42470950	+	SOX4	chr6	21596930	+
intron-3CDS	ENST00000261192	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000261192	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000261192	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000261192	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000538118	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000538118	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000538118	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000538118	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000342945	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000342945	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000342945	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000342945	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000539282	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539282	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539282	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539282	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000539780	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539780	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539780	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000539780	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000544418	ENST00000263980		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000544418	ENST00000490329		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000544418	ENST00000545949		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-intron	ENST00000544418	ENST00000374086		ChiTaRS3.1			BF996876	BCAT1	chr12	24968990	+	SLC9A1	chr1	27432495	-
intron-3CDS	ENST00000491387	ENST00000265107		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-intron	ENST00000491387	ENST00000504564		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-intron	ENST00000491387	ENST00000510699		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
3UTR-3CDS	ENST00000308521	ENST00000265107		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
3UTR-intron	ENST00000308521	ENST00000504564		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
3UTR-intron	ENST00000308521	ENST00000510699		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-3CDS	ENST00000381565	ENST00000265107		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-intron	ENST00000381565	ENST00000504564		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-intron	ENST00000381565	ENST00000510699		ChiTaRS3.1			BU565456	APOBEC3F	chr22	39448927	+	WDR70	chr5	37752596	+
intron-3UTR	ENST00000244711	ENST00000244711		ChiTaRS3.1			AA627306	MEA1	chr6	42980046	-	MEA1	chr6	42979974	+
intron-3CDS	ENST00000319622	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000319622	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000319622	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000319622	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000319622	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000319622	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000319622	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000319622	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565184	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565184	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565184	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565184	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565184	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565184	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565184	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565184	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000389093	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000389093	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000389093	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000389093	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000389093	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000389093	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000389093	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000389093	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000335181	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000335181	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000335181	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000335181	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000335181	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000335181	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000335181	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000335181	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568883	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568883	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568883	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568883	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568883	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568883	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568883	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568883	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000449901	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000449901	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000449901	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000449901	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000449901	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000449901	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000449901	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000449901	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565154	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565154	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565154	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000565154	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565154	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565154	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565154	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000565154	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568459	ENST00000319622		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568459	ENST00000565184		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568459	ENST00000389093		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-3CDS	ENST00000568459	ENST00000335181		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568459	ENST00000568883		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568459	ENST00000449901		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568459	ENST00000565154		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000568459	ENST00000568459		ChiTaRS3.1			CF132406	PKM	chr15	72499187	-	PKM	chr15	72502747	-
intron-intron	ENST00000334940	ENST00000334940		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000334940	ENST00000374417		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000334940	ENST00000340258		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000334940	ENST00000472561		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000374417	ENST00000334940		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000374417	ENST00000374417		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000374417	ENST00000340258		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000374417	ENST00000472561		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000340258	ENST00000334940		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000340258	ENST00000374417		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000340258	ENST00000340258		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000340258	ENST00000472561		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000472561	ENST00000334940		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000472561	ENST00000374417		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000472561	ENST00000340258		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-intron	ENST00000472561	ENST00000472561		ChiTaRS3.1			BQ932506	RASSF4	chr10	45472139	-	RASSF4	chr10	45473280	-
intron-3CDS	ENST00000457008	ENST00000457008		ChiTaRS3.1			AW375746	ERN2	chr16	23712335	+	ERN2	chr16	23717710	-
intron-3CDS	ENST00000457008	ENST00000256797		ChiTaRS3.1			AW375746	ERN2	chr16	23712335	+	ERN2	chr16	23717710	-
intron-3CDS	ENST00000256797	ENST00000457008		ChiTaRS3.1			AW375746	ERN2	chr16	23712335	+	ERN2	chr16	23717710	-
intron-3CDS	ENST00000256797	ENST00000256797		ChiTaRS3.1			AW375746	ERN2	chr16	23712335	+	ERN2	chr16	23717710	-
intron-intron	ENST00000408388	ENST00000357248		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000349721		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000382203		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000382194		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000491574		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000324954		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000302401		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000382186		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-intron	ENST00000408388	ENST00000382185		ChiTaRS3.1			BF934626	PVT1	chr8	129024886	+	SMARCA2	chr9	2111914	+
intron-3CDS	ENST00000264010	ENST00000272102		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3CDS	ENST00000264010	ENST00000540651		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3UTR	ENST00000264010	ENST00000478424		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3UTR	ENST00000264010	ENST00000541182		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3CDS	ENST00000401394	ENST00000272102		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3CDS	ENST00000401394	ENST00000540651		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3UTR	ENST00000401394	ENST00000478424		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-3UTR	ENST00000401394	ENST00000541182		ChiTaRS3.1			BF809756	CTCF	chr16	67617758	-	ARF1	chr1	228284855	+
intron-intron	ENST00000339007	ENST00000268296		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-intron	ENST00000339007	ENST00000562918		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-intron	ENST00000339007	ENST00000562522		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-intron	ENST00000595840	ENST00000268296		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-intron	ENST00000595840	ENST00000562918		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-intron	ENST00000595840	ENST00000562522		ChiTaRS3.1			CD370606	LRRC25	chr19	18502157	+	ITGAX	chr16	31369616	-
intron-3CDS	ENST00000270459	ENST00000261534		ChiTaRS3.1			BF871706	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000270459	ENST00000556880		ChiTaRS3.1			BF871706	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-3CDS	ENST00000587279	ENST00000261534		ChiTaRS3.1			BF871706	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000587279	ENST00000556880		ChiTaRS3.1			BF871706	ZNF787	chr19	56611319	+	POMT2	chr14	77751311	+
intron-intron	ENST00000476647	ENST00000264001		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000476647	ENST00000362093		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000476647	ENST00000351137		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000476647	ENST00000345436		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000476647	ENST00000417030		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000476647	ENST00000563092		ChiTaRS3.1			BC068076	KCP	chr7	128507727	-	CKLF	chr16	66596067	+
intron-intron	ENST00000452400	ENST00000401084		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000264203		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000375142		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000433834		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000264202		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000482808		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000452400	ENST00000375144		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000401084		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000264203		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000375142		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000433834		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000264202		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000482808		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000267974	ENST00000375144		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000401084		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000264203		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000375142		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000433834		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000264202		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000482808		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-intron	ENST00000524223	ENST00000375144		ChiTaRS3.1			AL706656	NCOA2	chr8	71290981	-	CAPZB	chr1	19672964	-
intron-3UTR	ENST00000436639	ENST00000436639		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000436639	ENST00000302071		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000436639	ENST00000356644		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-intron	ENST00000436639	ENST00000517548		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000302071	ENST00000436639		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000302071	ENST00000302071		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000302071	ENST00000356644		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-intron	ENST00000302071	ENST00000517548		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000356644	ENST00000436639		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000356644	ENST00000302071		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000356644	ENST00000356644		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-intron	ENST00000356644	ENST00000517548		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000517548	ENST00000436639		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000517548	ENST00000302071		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-3UTR	ENST00000517548	ENST00000356644		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
intron-intron	ENST00000517548	ENST00000517548		ChiTaRS3.1			BG165736	SESN1	chr6	109308759	+	SESN1	chr6	109308708	-
Frame-shit	ENST00000358026	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000358026	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000358026	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000344626	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000344626	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000429416	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000429416	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000541122	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000541122	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000589677	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000589677	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000444061	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000444061	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000590574	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000590574	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000413806	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000413806	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
Frame-shit	ENST00000450717	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
5CDS-intron	ENST00000450717	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000358026		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000344626		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000429416		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000541122		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000589677		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000444061		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000590574		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000413806		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-3CDS	ENST00000538456	ENST00000450717		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-intron	ENST00000538456	ENST00000538456		ChiTaRS3.1			BQ223626	SMARCA4	chr19	11105645	+	SMARCA4	chr19	11099993	+
intron-intron	ENST00000337537	ENST00000337537		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000337537	ENST00000555899		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000337537	ENST00000422769		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000337537	ENST00000553266		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000555899	ENST00000337537		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000555899	ENST00000555899		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000555899	ENST00000422769		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000555899	ENST00000553266		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000422769	ENST00000337537		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000422769	ENST00000555899		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000422769	ENST00000422769		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000422769	ENST00000553266		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000553266	ENST00000337537		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000553266	ENST00000555899		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000553266	ENST00000422769		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000553266	ENST00000553266		ChiTaRS3.1			BF988116	PPP2R5E	chr14	63987056	-	PPP2R5E	chr14	63987502	-
intron-intron	ENST00000532317	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000532317	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000532317	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000532317	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000532317	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000532317	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000526033	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000393346	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528398	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000356360	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000362005		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000370389		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000399546		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000394530		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000402388		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
intron-intron	ENST00000528411	ENST00000484781		ChiTaRS3.1			AW367786	PICALM	chr11	85701748	-	BRDT	chr1	92444130	+
5CDS-intron	ENST00000389501	ENST00000379933		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000389501	ENST00000379938		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000389501	ENST00000334984		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000389501	ENST00000349384		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000474652	ENST00000379933		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000474652	ENST00000379938		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000474652	ENST00000334984		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
5CDS-intron	ENST00000474652	ENST00000349384		ChiTaRS3.1			BE938066	SMYD5	chr2	73449044	+	RREB1	chr6	7113629	+
Frame-shit	ENST00000589037	ENST00000589037		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
Frame-shit	ENST00000589037	ENST00000253788		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
Frame-shit	ENST00000589037	ENST00000589913		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
5CDS-5UTR	ENST00000589037	ENST00000590864		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000253788	ENST00000589037		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000253788	ENST00000253788		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000253788	ENST00000589913		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
5CDS-5UTR	ENST00000253788	ENST00000590864		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000589913	ENST00000589037		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000589913	ENST00000253788		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
In-frame	ENST00000589913	ENST00000589913		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
5CDS-5UTR	ENST00000589913	ENST00000590864		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
Frame-shit	ENST00000590864	ENST00000589037		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
Frame-shit	ENST00000590864	ENST00000253788		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
Frame-shit	ENST00000590864	ENST00000589913		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
5CDS-5UTR	ENST00000590864	ENST00000590864		ChiTaRS3.1			BU685466	RPL27	chr17	41154913	-	RPL27	chr17	41151948	+
intron-intron	ENST00000393043	ENST00000393043		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-3UTR	ENST00000393043	ENST00000269122		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000393043	ENST00000579456		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000393043	ENST00000579815		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
3UTR-intron	ENST00000269122	ENST00000393043		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
3UTR-3UTR	ENST00000269122	ENST00000269122		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
3UTR-intron	ENST00000269122	ENST00000579456		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
3UTR-intron	ENST00000269122	ENST00000579815		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579456	ENST00000393043		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-3UTR	ENST00000579456	ENST00000269122		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579456	ENST00000579456		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579456	ENST00000579815		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579815	ENST00000393043		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-3UTR	ENST00000579815	ENST00000269122		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579815	ENST00000579456		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-intron	ENST00000579815	ENST00000579815		ChiTaRS3.1			CN414696	CLTC	chr17	57771931	-	CLTC	chr17	57771969	+
intron-3CDS	ENST00000322507	ENST00000392951		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000322507	ENST00000530649		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000322507	ENST00000532870		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000345356	ENST00000392951		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000345356	ENST00000530649		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000345356	ENST00000532870		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000416123	ENST00000392951		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000416123	ENST00000530649		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000416123	ENST00000532870		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000483888	ENST00000392951		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000483888	ENST00000530649		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000483888	ENST00000532870		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000511023	ENST00000392951		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000511023	ENST00000530649		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-3CDS	ENST00000511023	ENST00000532870		ChiTaRS3.1			BU945056	COL12A1	chr6	75797391	-	TAGLN	chr11	117075021	+
intron-intron	ENST00000370018	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370018	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370018	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370018	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370018	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370018	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000318100	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000508582	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000360203	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000488316	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000370018		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000318100		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000508582		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000360203		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000488316		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-intron	ENST00000370003	ENST00000370003		ChiTaRS3.1			BE879166	RTEL1	chr20	62328501	-	RTEL1	chr20	62328711	+
intron-3CDS	ENST00000604900	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000604900	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000604900	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000604900	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000412716	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000412716	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000412716	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000412716	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000449723	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000449723	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000449723	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
3UTR-3CDS	ENST00000449723	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549555	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549555	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549555	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549555	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000439799	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000439799	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000439799	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000439799	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000425012	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000425012	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000425012	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000425012	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549732	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549732	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549732	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000549732	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551534	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551534	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551534	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551534	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551313	ENST00000331925		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551313	ENST00000573283		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551313	ENST00000575842		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
intron-3CDS	ENST00000551313	ENST00000575087		ChiTaRS3.1			BE836126	DAZAP2	chr12	51637108	+	ACTG1	chr17	79478315	+
In-frame	ENST00000298310	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000298310	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000298310	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000298310	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000298310	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000298310	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
In-frame	ENST00000382135	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000382135	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000382135	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000382135	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000382135	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000382135	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
In-frame	ENST00000545773	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000545773	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000545773	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000545773	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000545773	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000545773	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-3CDS	ENST00000556925	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-intron	ENST00000556925	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-intron	ENST00000556925	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-5UTR	ENST00000556925	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-5UTR	ENST00000556925	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5UTR-intron	ENST00000556925	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
In-frame	ENST00000546046	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000546046	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000546046	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000546046	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-5UTR	ENST00000546046	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
5CDS-intron	ENST00000546046	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-3CDS	ENST00000556672	ENST00000298310		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-intron	ENST00000556672	ENST00000382135		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-intron	ENST00000556672	ENST00000545773		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-5UTR	ENST00000556672	ENST00000556925		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-5UTR	ENST00000556672	ENST00000546046		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-intron	ENST00000556672	ENST00000556672		ChiTaRS3.1			BU541686	NEMF	chr14	50255863	-	NEMF	chr14	50298082	-
intron-intron	ENST00000265113	ENST00000528780		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000265113	ENST00000328221		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000265113	ENST00000408968		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-intron	ENST00000265113	ENST00000525554		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-intron	ENST00000506725	ENST00000528780		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000506725	ENST00000328221		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000506725	ENST00000408968		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-intron	ENST00000506725	ENST00000525554		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-intron	ENST00000381918	ENST00000528780		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000381918	ENST00000328221		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-5UTR	ENST00000381918	ENST00000408968		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
intron-intron	ENST00000381918	ENST00000525554		ChiTaRS3.1			AW888966	SLC1A3	chr5	36684643	+	IFITM1	chr11	314122	+
3UTR-3UTR	ENST00000264158	ENST00000271417		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000529387		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000528703		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000526687		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000469934		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000525740		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000264158	ENST00000529071		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000539493	ENST00000271417		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000529387		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000528703		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000526687		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000469934		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000525740		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000539493	ENST00000529071		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-3UTR	ENST00000442034	ENST00000271417		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000529387		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000528703		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000526687		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000469934		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000525740		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-intron	ENST00000442034	ENST00000529071		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000487003	ENST00000271417		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000529387		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000528703		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000526687		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000469934		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000525740		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000487003	ENST00000529071		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-3UTR	ENST00000425393	ENST00000271417		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000529387		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000528703		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000526687		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000469934		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000525740		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
intron-intron	ENST00000425393	ENST00000529071		ChiTaRS3.1			AI655736	RAB3GAP1	chr2	135926556	-	ILDR2	chr1	166884911	+
3UTR-3UTR	ENST00000337132	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000337132	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000337132	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000337132	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-3UTR	ENST00000337132	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000337132	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000504551	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000504551	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000504551	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000504551	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000504551	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000504551	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000457722	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000457722	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000457722	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000457722	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000457722	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000457722	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000406746	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000406746	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000406746	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000406746	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000406746	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000406746	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-3UTR	ENST00000443980	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000443980	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000443980	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000443980	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-3UTR	ENST00000443980	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
3UTR-intron	ENST00000443980	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000486390	ENST00000337132		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000486390	ENST00000504551		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000486390	ENST00000457722		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000486390	ENST00000406746		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-3UTR	ENST00000486390	ENST00000443980		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
intron-intron	ENST00000486390	ENST00000486390		ChiTaRS3.1			BQ424276	NECAP2	chr1	16785760	-	NECAP2	chr1	16785833	+
5UTR-3CDS	ENST00000261772	ENST00000393567		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000448089		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000448691		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000321489		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000538248		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000541601		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000288168		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000393550		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
5UTR-intron	ENST00000261772	ENST00000543639		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-3CDS	ENST00000564359	ENST00000393567		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000448089		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000448691		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000321489		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000538248		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000541601		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000288168		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000393550		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000564359	ENST00000543639		ChiTaRS3.1			BG829246	AARS	chr16	70323322	-	HYDIN	chr16	70929985	-
intron-intron	ENST00000324306	ENST00000324306		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000324306	ENST00000426572		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000324306	ENST00000535170		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000324306		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000426572		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000426572	ENST00000535170		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000324306		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000426572		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000535170	ENST00000535170		ChiTaRS3.1			BF760316	ZKSCAN1	chr7	99621040	-	ZKSCAN1	chr7	99621931	-
intron-intron	ENST00000454498	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000454498	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000454498	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000454498	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000454498	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000454498	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000332246	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000311540	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000522854	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000544602	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000454498		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000332246		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000311540		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000522854		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000544602		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
intron-intron	ENST00000518542	ENST00000518542		ChiTaRS3.1			DW420626	CSGALNACT1	chr8	19589501	-	CSGALNACT1	chr8	19591809	-
3UTR-3UTR	ENST00000538546	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000538546	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000538546	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000538546	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000538546	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000538546	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000538546	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535623	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535623	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535623	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535623	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535623	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000535623	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000535623	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535011	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535011	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535011	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535011	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000535011	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000535011	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000535011	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000542996	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000542996	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000542996	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000542996	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000542996	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000542996	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000542996	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000249364	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000249364	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000249364	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000249364	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000249364	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000249364	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000249364	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000449187	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000449187	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000449187	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000449187	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-3UTR	ENST00000449187	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000449187	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
3UTR-intron	ENST00000449187	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-3UTR	ENST00000479257	ENST00000538546		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-3UTR	ENST00000479257	ENST00000535623		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-3UTR	ENST00000479257	ENST00000535011		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-3UTR	ENST00000479257	ENST00000542996		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-3UTR	ENST00000479257	ENST00000249364		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-intron	ENST00000479257	ENST00000449187		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
intron-intron	ENST00000479257	ENST00000479257		ChiTaRS3.1			AW196446	CALU	chr7	128410500	-	CALU	chr7	128411216	-
5CDS-intron	ENST00000314797	ENST00000504557		ChiTaRS3.1			BG395696	COPG1	chr3	128991716	-	HOXC9	chr12	54393942	+
5CDS-5UTR	ENST00000314797	ENST00000508190		ChiTaRS3.1			BG395696	COPG1	chr3	128991716	-	HOXC9	chr12	54393942	+
5CDS-5UTR	ENST00000314797	ENST00000303450		ChiTaRS3.1			BG395696	COPG1	chr3	128991716	-	HOXC9	chr12	54393942	+
intron-3UTR	ENST00000409251	ENST00000313949		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000409251	ENST00000371098		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000371075		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000371100		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000409251	ENST00000371099		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000371102		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000464624		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000409251	ENST00000306120		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000371095		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000371085		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000354359		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000265620		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000409251	ENST00000306090		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000409251	ENST00000371081		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000313949		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000295718	ENST00000371098		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000371075		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000371100		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000295718	ENST00000371099		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000371102		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000464624		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000295718	ENST00000306120		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000371095		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000371085		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000354359		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000265620		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000295718	ENST00000306090		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000295718	ENST00000371081		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000313949		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000423636	ENST00000371098		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000371075		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000371100		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000423636	ENST00000371099		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000371102		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000464624		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000423636	ENST00000306120		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000371095		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000371085		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000354359		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000265620		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000423636	ENST00000306090		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000423636	ENST00000371081		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000313949		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000497977	ENST00000371098		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000371075		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000371100		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000497977	ENST00000371099		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000371102		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000464624		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000497977	ENST00000306120		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000371095		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000371085		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000354359		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000265620		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-3UTR	ENST00000497977	ENST00000306090		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
intron-intron	ENST00000497977	ENST00000371081		ChiTaRS3.1			BP388116	PTPRN	chr2	220154577	+	GNAS	chr20	57485990	+
Frame-shit	ENST00000341911	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000341911	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000341911	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000341911	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000341911	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000341911	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000341911	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000341911	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000341911	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000316528	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000316528	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000316528	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000316528	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000316528	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000316528	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000316528	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000316528	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000316528	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000442647	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000442647	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000442647	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000442647	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000442647	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000442647	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000442647	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000442647	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000442647	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000367814	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000367814	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000367814	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000367814	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000367814	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000367814	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000367814	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000367814	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000367814	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000525369	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000525369	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000525369	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000525369	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000525369	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000525369	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000525369	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000525369	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000525369	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534121	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534121	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534121	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534121	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534121	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534121	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534121	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534121	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000534121	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000533624	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000533624	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000533624	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000533624	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000533624	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000533624	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000533624	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000533624	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000533624	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534044	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534044	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534044	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534044	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534044	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534044	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000534044	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000534044	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000534044	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000528774	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000528774	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000528774	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000528774	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000528774	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000528774	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000528774	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000528774	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000528774	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-3CDS	ENST00000531845	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
3UTR-intron	ENST00000531845	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000527615	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
In-frame	ENST00000527615	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
Frame-shit	ENST00000527615	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
5CDS-intron	ENST00000527615	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000380934		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000380959		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000380953		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000397575		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000397581		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000397579		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000543693		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000420123	ENST00000380924		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-intron	ENST00000420123	ENST00000380921		ChiTaRS3.1			FJ969916	MYB	chr6	135524462	+	NFIB	chr9	14088328	-
intron-3CDS	ENST00000528498	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528498	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528498	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528498	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528498	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528498	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528498	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528498	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528498	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528900	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528900	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528900	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000528900	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528900	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528900	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528900	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528900	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000528900	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000405097	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000405097	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000405097	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000405097	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000405097	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000405097	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000405097	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000405097	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000405097	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000530301	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000530301	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000530301	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000530301	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000530301	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000530301	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000530301	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000530301	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000530301	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000343115	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000343115	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000343115	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000343115	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000343115	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000343115	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000343115	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000343115	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000343115	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000544551	ENST00000552285		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000544551	ENST00000315970		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000544551	ENST00000439210		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000544551	ENST00000389146		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000544551	ENST00000413095		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000544551	ENST00000551035		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000544551	ENST00000435406		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000544551	ENST00000257966		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-intron	ENST00000544551	ENST00000389142		ChiTaRS3.1			BC000476	RDX	chr5	148876399	+	OS9	chr12	58089754	+
intron-3CDS	ENST00000301764	ENST00000301764		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000301764	ENST00000450997		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000451943		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000538470		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000301764	ENST00000545930		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000450997	ENST00000301764		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000450997	ENST00000450997		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000451943		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000538470		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000450997	ENST00000545930		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000451943	ENST00000301764		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000451943	ENST00000450997		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000451943		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000538470		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000451943	ENST00000545930		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000538470	ENST00000301764		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000538470	ENST00000450997		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000451943		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000538470		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000538470	ENST00000545930		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000545930	ENST00000301764		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-3CDS	ENST00000545930	ENST00000450997		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000451943		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000538470		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000545930	ENST00000545930		ChiTaRS3.1			BF976636	DDB1	chr11	61077807	+	DDB1	chr11	61077421	-
intron-intron	ENST00000338252	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000338252	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000338252	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000338252	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000338252	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000338252	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000338252	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508830	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508830	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508830	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508830	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508830	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508830	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000359176	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000359176	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000359176	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000359176	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000359176	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000359176	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395812	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395812	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395812	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395812	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395812	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395812	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000325674	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000325674	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000325674	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000325674	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000325674	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000325674	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395813	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395813	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395813	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395813	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000395813	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000395813	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000510756	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000510756	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000510756	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000510756	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000510756	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000510756	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508608	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508608	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508608	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508608	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508608	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508608	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000341926	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000341926	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000341926	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000341926	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000341926	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000341926	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511049	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511049	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511049	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511049	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511049	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511049	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000309190	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000309190	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000309190	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000309190	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-3UTR	ENST00000309190	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
3UTR-intron	ENST00000309190	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000509903	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000509903	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000509903	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000509903	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000509903	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000509903	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511782	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511782	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511782	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511782	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000511782	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000511782	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000504465	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000504465	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000504465	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000504465	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000504465	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000504465	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000348386	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000348386	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000348386	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000348386	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000348386	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000348386	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508579	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508579	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508579	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508579	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000508579	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000508579	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000338252		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000508830		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000515663	ENST00000359176		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000515663	ENST00000395812		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000515663	ENST00000325674		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000515663	ENST00000395813		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000510756		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000508608		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000341926		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000511049		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3UTR	ENST00000515663	ENST00000309190		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000509903		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000511782		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000504465		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000348386		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000508579		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-intron	ENST00000515663	ENST00000515663		ChiTaRS3.1			CV573006	CAST	chr5	96109993	-	CAST	chr5	96109284	+
intron-3CDS	ENST00000372090	ENST00000372090		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3CDS	ENST00000372090	ENST00000539779		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3UTR	ENST00000372090	ENST00000495703		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3CDS	ENST00000539779	ENST00000372090		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3CDS	ENST00000539779	ENST00000539779		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3UTR	ENST00000539779	ENST00000495703		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
3UTR-3CDS	ENST00000495703	ENST00000372090		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
3UTR-3CDS	ENST00000495703	ENST00000539779		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
3UTR-3UTR	ENST00000495703	ENST00000495703		ChiTaRS3.1			CT001896	TOE1	chr1	45808432	-	TOE1	chr1	45808754	+
intron-3UTR	ENST00000220325	ENST00000220325		ChiTaRS3.1			AA287066	EHD4	chr15	42191800	+	EHD4	chr15	42192171	-
intron-intron	ENST00000413021	ENST00000227155		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000413021	ENST00000342935		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000413021	ENST00000530931		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
3UTR-intron	ENST00000219345	ENST00000227155		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
3UTR-intron	ENST00000219345	ENST00000342935		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
3UTR-intron	ENST00000219345	ENST00000530931		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000566188	ENST00000227155		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000566188	ENST00000342935		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000566188	ENST00000530931		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000444212	ENST00000227155		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000444212	ENST00000342935		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000444212	ENST00000530931		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000568599	ENST00000227155		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000568599	ENST00000342935		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000568599	ENST00000530931		ChiTaRS3.1			CN480826	PLA2G15	chr16	68294413	-	CD82	chr11	44638370	-
intron-intron	ENST00000567684	ENST00000567684		ChiTaRS3.1			BF994136	HSD11B2	chr16	67465523	-	HSD11B2	chr16	67469379	-
intron-intron	ENST00000567684	ENST00000326152		ChiTaRS3.1			BF994136	HSD11B2	chr16	67465523	-	HSD11B2	chr16	67469379	-
intron-intron	ENST00000326152	ENST00000567684		ChiTaRS3.1			BF994136	HSD11B2	chr16	67465523	-	HSD11B2	chr16	67469379	-
intron-intron	ENST00000326152	ENST00000326152		ChiTaRS3.1			BF994136	HSD11B2	chr16	67465523	-	HSD11B2	chr16	67469379	-
3UTR-3UTR	ENST00000225387	ENST00000361970		ChiTaRS3.1			BM666166	CRYBA1	chr17	27581455	-	CCDC152	chr5	42800554	+
3UTR-intron	ENST00000225387	ENST00000388827		ChiTaRS3.1			BM666166	CRYBA1	chr17	27581455	-	CCDC152	chr5	42800554	+
intron-intron	ENST00000009041	ENST00000009041		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000009041	ENST00000544203		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000009041	ENST00000434197		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000009041	ENST00000396013		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000544203	ENST00000009041		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000544203	ENST00000544203		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000544203	ENST00000434197		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000544203	ENST00000396013		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000434197	ENST00000009041		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000434197	ENST00000544203		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000434197	ENST00000434197		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000434197	ENST00000396013		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000396013	ENST00000009041		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000396013	ENST00000544203		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000396013	ENST00000434197		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-intron	ENST00000396013	ENST00000396013		ChiTaRS3.1			BU199306	STARD3NL	chr7	38240856	+	STARD3NL	chr7	38233212	+
intron-5UTR	ENST00000224950	ENST00000224950		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000224950	ENST00000369764		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000224950	ENST00000466828		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000369764	ENST00000224950		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000369764	ENST00000369764		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000369764	ENST00000466828		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000466828	ENST00000224950		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000466828	ENST00000369764		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-5UTR	ENST00000466828	ENST00000466828		ChiTaRS3.1			BG427356	OBFC1	chr10	105638199	-	OBFC1	chr10	105677393	-
intron-intron	ENST00000450514	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450514	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450514	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450514	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450514	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422366	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422366	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422366	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422366	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422366	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427196	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427196	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427196	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427196	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427196	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000442228	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000442228	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000442228	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000442228	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000442228	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425999	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425999	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425999	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425999	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425999	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425404	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425404	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425404	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425404	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000425404	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427938	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427938	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427938	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427938	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000427938	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450532	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450532	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450532	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450532	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000450532	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422493	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422493	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422493	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422493	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000422493	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
3UTR-intron	ENST00000440216	ENST00000535628		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
3UTR-intron	ENST00000440216	ENST00000588982		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
3UTR-intron	ENST00000440216	ENST00000586438		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
3UTR-intron	ENST00000440216	ENST00000590800		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
3UTR-intron	ENST00000440216	ENST00000332053		ChiTaRS3.1			BF820096	HCG25	chr6	4698710	+	ZBTB7C	chr18	45840872	+
intron-intron	ENST00000359282	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359282	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000603815	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000437231	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000447282	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000549863	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000359462	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000546463	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552296	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000552819	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000455667	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000439930	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-intron	ENST00000548933	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000359282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000603815		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000437231		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000447282		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000549863		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000359462		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000546463		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000552296		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000552819		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000455667		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000439930		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000548933		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
3UTR-intron	ENST00000541275	ENST00000541275		ChiTaRS3.1			BF805026	PCBP2	chr12	53861286	+	PCBP2	chr12	53861471	-
intron-3CDS	ENST00000360772	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000360772	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000360772	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360772	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000359169	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000359169	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000359169	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000359169	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000360304	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000360304	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000360304	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000360304	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000418370	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000418370	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000418370	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000418370	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000578202	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000578202	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000578202	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000578202	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000354792	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000354792	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000354792	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000354792	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000346322	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000346322	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000346322	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000346322	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000583087	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000583087	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000583087	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000583087	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000475616	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000475616	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000475616	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000475616	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000510775	ENST00000360772		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000510775	ENST00000359169		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000510775	ENST00000360304		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000418370		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000578202		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000354792		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000346322		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000583087		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000475616		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-intron	ENST00000510775	ENST00000510775		ChiTaRS3.1			BP376396	MYLK	chr3	123359267	-	MYLK	chr3	123376183	-
intron-3CDS	ENST00000591142	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591142	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591142	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591601	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591601	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591601	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000309340	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000309340	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000309340	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000250896	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000250896	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000250896	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000541165	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000541165	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000541165	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591588	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591588	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000591588	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000588014	ENST00000367612		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000588014	ENST00000609928		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000588014	ENST00000482587		ChiTaRS3.1			BF765876	MKNK2	chr19	2038867	+	TOR1AIP2	chr1	179846934	-
intron-3CDS	ENST00000356766	ENST00000315872		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000356766	ENST00000462366		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000356766	ENST00000401753		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-3CDS	ENST00000521356	ENST00000315872		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000521356	ENST00000462366		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000521356	ENST00000401753		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-3CDS	ENST00000454009	ENST00000315872		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000454009	ENST00000462366		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
intron-intron	ENST00000454009	ENST00000401753		ChiTaRS3.1			BF061806	PIWIL2	chr8	22133947	-	ROCK2	chr2	11351915	+
3UTR-3UTR	ENST00000250092	ENST00000263955		ChiTaRS3.1			AA279176	CD68	chr17	7485224	-	STK17B	chr2	197000641	+
3UTR-intron	ENST00000250092	ENST00000409228		ChiTaRS3.1			AA279176	CD68	chr17	7485224	-	STK17B	chr2	197000641	+
3UTR-3UTR	ENST00000380498	ENST00000263955		ChiTaRS3.1			AA279176	CD68	chr17	7485224	-	STK17B	chr2	197000641	+
3UTR-intron	ENST00000380498	ENST00000409228		ChiTaRS3.1			AA279176	CD68	chr17	7485224	-	STK17B	chr2	197000641	+
intron-intron	ENST00000369002	ENST00000342895		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
intron-intron	ENST00000369002	ENST00000370138		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
intron-intron	ENST00000369002	ENST00000370137		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
intron-intron	ENST00000460009	ENST00000342895		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
intron-intron	ENST00000460009	ENST00000370138		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
intron-intron	ENST00000460009	ENST00000370137		ChiTaRS3.1			BU570466	SEC63	chr6	108248564	-	LRRC39	chr1	100626390	+
3UTR-intron	ENST00000379516	ENST00000378743		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
3UTR-intron	ENST00000379516	ENST00000548100		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
3UTR-intron	ENST00000379516	ENST00000552037		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
3UTR-intron	ENST00000379516	ENST00000549407		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000514949	ENST00000378743		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000514949	ENST00000548100		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000514949	ENST00000552037		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000514949	ENST00000549407		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000510372	ENST00000378743		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000510372	ENST00000548100		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000510372	ENST00000552037		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-intron	ENST00000510372	ENST00000549407		ChiTaRS3.1			AI738516	SNX2	chr5	122165494	-	ZFC3H1	chr12	72023384	+
intron-3CDS	ENST00000452401	ENST00000247001		ChiTaRS3.1			BE938476	SPPL2B	chr19	2344549	-	SUGP1	chr19	19413086	+
intron-intron	ENST00000452401	ENST00000585763		ChiTaRS3.1			BE938476	SPPL2B	chr19	2344549	-	SUGP1	chr19	19413086	+
intron-intron	ENST00000452401	ENST00000334782		ChiTaRS3.1			BE938476	SPPL2B	chr19	2344549	-	SUGP1	chr19	19413086	+
intron-3CDS	ENST00000340482	ENST00000340482		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-3CDS	ENST00000340482	ENST00000225275		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-intron	ENST00000340482	ENST00000578493		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-3CDS	ENST00000225275	ENST00000340482		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-3CDS	ENST00000225275	ENST00000225275		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-intron	ENST00000225275	ENST00000578493		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-3CDS	ENST00000578493	ENST00000340482		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-3CDS	ENST00000578493	ENST00000225275		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
intron-intron	ENST00000578493	ENST00000578493		ChiTaRS3.1			BF901556	MPO	chr17	56350995	-	MPO	chr17	56357991	-
Frame-shit	ENST00000267103	ENST00000267103		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
Frame-shit	ENST00000267103	ENST00000548632		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
5CDS-intron	ENST00000267103	ENST00000549488		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
Frame-shit	ENST00000548632	ENST00000267103		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
Frame-shit	ENST00000548632	ENST00000548632		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
5CDS-intron	ENST00000548632	ENST00000549488		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
Frame-shit	ENST00000549488	ENST00000267103		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
Frame-shit	ENST00000549488	ENST00000548632		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
5CDS-intron	ENST00000549488	ENST00000549488		ChiTaRS3.1			AW363996	C12orf10	chr12	53700889	+	C12orf10	chr12	53696919	+
intron-intron	ENST00000301923	ENST00000301923		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000301923	ENST00000402203		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000301923	ENST00000454349		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000301923	ENST00000335727		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000301923	ENST00000497559		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000402203	ENST00000301923		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000402203	ENST00000402203		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000402203	ENST00000454349		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000402203	ENST00000335727		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000402203	ENST00000497559		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000454349	ENST00000301923		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000454349	ENST00000402203		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000454349	ENST00000454349		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000454349	ENST00000335727		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000454349	ENST00000497559		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000335727	ENST00000301923		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000335727	ENST00000402203		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000335727	ENST00000454349		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000335727	ENST00000335727		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000335727	ENST00000497559		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000497559	ENST00000301923		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000497559	ENST00000402203		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000497559	ENST00000454349		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000497559	ENST00000335727		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000497559	ENST00000497559		ChiTaRS3.1			N54856	TNRC6B	chr22	40643788	+	TNRC6B	chr22	40642474	+
intron-intron	ENST00000348428	ENST00000396402		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000260433		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000396404		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000559878		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000405913		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000557858		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000492852		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000396402		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000260433		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000396404		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000559878		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000405913		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000557858		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000492852		ChiTaRS3.1			BF888866	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-3CDS	ENST00000358901	ENST00000356495		ChiTaRS3.1			BQ320186	VCP	chr9	35056447	+	PIGR	chr1	207110540	-
intron-intron	ENST00000358901	ENST00000487208		ChiTaRS3.1			BQ320186	VCP	chr9	35056447	+	PIGR	chr1	207110540	-
intron-intron	ENST00000342247	ENST00000287218		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000342247	ENST00000373391		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000342247	ENST00000463847		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400585	ENST00000287218		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400585	ENST00000373391		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400585	ENST00000463847		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000497534	ENST00000287218		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000497534	ENST00000373391		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000497534	ENST00000463847		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400573	ENST00000287218		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400573	ENST00000373391		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000400573	ENST00000463847		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000262608	ENST00000287218		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000262608	ENST00000373391		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
5CDS-intron	ENST00000262608	ENST00000463847		ChiTaRS3.1			BE144286	CECR2	chr22	18022156	-	ZFAND3	chr6	38114094	+
intron-intron	ENST00000524115	ENST00000524115		ChiTaRS3.1			BI030456	NKX6-3	chr8	41530409	-	NKX6-3	chr8	41542160	+
intron-intron	ENST00000264444	ENST00000260197		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000264444	ENST00000532451		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000264444	ENST00000525532		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000264444	ENST00000532694		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000264444	ENST00000534286		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000264444	ENST00000527934		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000260197		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000532451		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000525532		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000532694		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000534286		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000540449	ENST00000527934		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000260197		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000532451		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000525532		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000532694		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000534286		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000465446	ENST00000527934		ChiTaRS3.1			AW866776	MXD1	chr2	70151472	-	SORL1	chr11	121359835	-
intron-intron	ENST00000542265	ENST00000542265		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542265	ENST00000542314		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542265	ENST00000538804		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542265	ENST00000539446		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542265	ENST00000535200		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542314	ENST00000542265		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542314	ENST00000542314		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542314	ENST00000538804		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542314	ENST00000539446		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000542314	ENST00000535200		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000538804	ENST00000542265		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000538804	ENST00000542314		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000538804	ENST00000538804		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000538804	ENST00000539446		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000538804	ENST00000535200		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000539446	ENST00000542265		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000539446	ENST00000542314		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000539446	ENST00000538804		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000539446	ENST00000539446		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000539446	ENST00000535200		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000535200	ENST00000542265		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000535200	ENST00000542314		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000535200	ENST00000538804		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000535200	ENST00000539446		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-intron	ENST00000535200	ENST00000535200		ChiTaRS3.1			BF834386	PXN-AS1	chr12	120648642	+	PXN-AS1	chr12	120648466	-
intron-3CDS	ENST00000216484	ENST00000216484		ChiTaRS3.1			AW376106	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-intron	ENST00000216484	ENST00000556264		ChiTaRS3.1			AW376106	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-3CDS	ENST00000556264	ENST00000216484		ChiTaRS3.1			AW376106	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-intron	ENST00000556264	ENST00000556264		ChiTaRS3.1			AW376106	SPTLC2	chr14	77978692	-	SPTLC2	chr14	77978648	+
intron-intron	ENST00000254624	ENST00000254624		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000254624	ENST00000334503		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000254624	ENST00000519656		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000254624	ENST00000521940		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000334503	ENST00000254624		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000334503	ENST00000334503		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000334503	ENST00000519656		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000334503	ENST00000521940		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000519656	ENST00000254624		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000519656	ENST00000334503		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000519656	ENST00000519656		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000519656	ENST00000521940		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000521940	ENST00000254624		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000521940	ENST00000334503		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000521940	ENST00000519656		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000521940	ENST00000521940		ChiTaRS3.1			BE005906	EFR3A	chr8	133004065	-	EFR3A	chr8	133004249	+
intron-intron	ENST00000233813	ENST00000373570		ChiTaRS3.1			AI682966	IGFBP5	chr2	217537116	+	RPL35	chr9	127624210	-
intron-5UTR	ENST00000233813	ENST00000348462		ChiTaRS3.1			AI682966	IGFBP5	chr2	217537116	+	RPL35	chr9	127624210	-
intron-intron	ENST00000431794	ENST00000431794		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000431794	ENST00000268852		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000431794	ENST00000586007		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000431794	ENST00000544606		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000431794	ENST00000590081		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000268852	ENST00000431794		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000268852	ENST00000268852		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000268852	ENST00000586007		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000268852	ENST00000544606		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000268852	ENST00000590081		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000586007	ENST00000431794		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000586007	ENST00000268852		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000586007	ENST00000586007		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000586007	ENST00000544606		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000586007	ENST00000590081		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000544606	ENST00000431794		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000544606	ENST00000268852		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000544606	ENST00000586007		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000544606	ENST00000544606		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000544606	ENST00000590081		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000590081	ENST00000431794		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000590081	ENST00000268852		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000590081	ENST00000586007		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-3UTR	ENST00000590081	ENST00000544606		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000590081	ENST00000590081		ChiTaRS3.1			AA053916	MYO19	chr17	34869145	+	MYO19	chr17	34869020	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			BI013736	IGHG1	chr14	106174188	+	IGHG1	chr14	106174465	-
3UTR-intron	ENST00000521913	ENST00000472110		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
3UTR-3UTR	ENST00000521913	ENST00000402966		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
3UTR-intron	ENST00000311151	ENST00000472110		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
3UTR-3UTR	ENST00000311151	ENST00000402966		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
intron-intron	ENST00000523027	ENST00000472110		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
intron-3UTR	ENST00000523027	ENST00000402966		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
intron-intron	ENST00000521983	ENST00000472110		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
intron-3UTR	ENST00000521983	ENST00000402966		ChiTaRS3.1			BE699656	DPYSL2	chr8	26514113	-	C22orf46	chr22	42091795	+
intron-intron	ENST00000388996	ENST00000370331		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000540033		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000543509		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000388996	ENST00000491940		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000370331		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000540033		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000543509		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000521134	ENST00000491940		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000370331		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000540033		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000543509		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-intron	ENST00000519445	ENST00000491940		ChiTaRS3.1			BF509246	KCNQ3	chr8	133133675	+	EVI5	chr1	93112734	+
intron-3CDS	ENST00000400324	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400324	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400324	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400324	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400324	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400324	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000400324	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400330	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000400330	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400319	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000400319	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000400320	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000400320	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000377908	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000377908	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000267215	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000267215	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000400324		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000400330		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000400319		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000400320		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000377908		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-3CDS	ENST00000465066	ENST00000267215		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
intron-5UTR	ENST00000465066	ENST00000465066		ChiTaRS3.1			BU960336	DIAPH3	chr13	60348315	-	DIAPH3	chr13	60385058	-
5CDS-3UTR	ENST00000354618	ENST00000534336		ChiTaRS3.1			BE835426	THRAP3	chr1	36754698	-	MALAT1	chr11	65268032	-
5CDS-3UTR	ENST00000469141	ENST00000534336		ChiTaRS3.1			BE835426	THRAP3	chr1	36754698	-	MALAT1	chr11	65268032	-
intron-3UTR	ENST00000466743	ENST00000534336		ChiTaRS3.1			BE835426	THRAP3	chr1	36754698	-	MALAT1	chr11	65268032	-
5CDS-3UTR	ENST00000415229	ENST00000415229		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-intron	ENST00000415229	ENST00000535727		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-3UTR	ENST00000415229	ENST00000301776		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-intron	ENST00000415229	ENST00000528206		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-3UTR	ENST00000535727	ENST00000415229		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-intron	ENST00000535727	ENST00000535727		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-3UTR	ENST00000535727	ENST00000301776		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-intron	ENST00000535727	ENST00000528206		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-3UTR	ENST00000301776	ENST00000415229		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-intron	ENST00000301776	ENST00000535727		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-3UTR	ENST00000301776	ENST00000301776		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
5CDS-intron	ENST00000301776	ENST00000528206		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-3UTR	ENST00000528206	ENST00000415229		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-intron	ENST00000528206	ENST00000535727		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-3UTR	ENST00000528206	ENST00000301776		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
intron-intron	ENST00000528206	ENST00000528206		ChiTaRS3.1			DB298136	ASRGL1	chr11	62159694	-	ASRGL1	chr11	62160381	-
3UTR-3UTR	ENST00000394670	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-intron	ENST00000394670	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000394670	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000321233	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-intron	ENST00000321233	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000321233	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000394673	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-intron	ENST00000394673	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000394673	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000341711	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-intron	ENST00000341711	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
3UTR-3UTR	ENST00000341711	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000342555	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-intron	ENST00000342555	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000342555	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000577908	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-intron	ENST00000577908	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000577908	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000584416	ENST00000394123		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-intron	ENST00000584416	ENST00000543466		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000584416	ENST00000356245		ChiTaRS3.1			BP429626	ZNF207	chr17	30696896	+	G3BP1	chr5	151184083	-
intron-3UTR	ENST00000368985	ENST00000442123		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-3UTR	ENST00000368985	ENST00000354586		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-intron	ENST00000368985	ENST00000556861		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-3UTR	ENST00000448301	ENST00000442123		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-3UTR	ENST00000448301	ENST00000354586		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-intron	ENST00000448301	ENST00000556861		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-3UTR	ENST00000480760	ENST00000442123		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-3UTR	ENST00000480760	ENST00000354586		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
intron-intron	ENST00000480760	ENST00000556861		ChiTaRS3.1			CA748546	CTSS	chr1	150705276	+	STYX	chr14	53241158	-
3UTR-intron	ENST00000344642	ENST00000549405		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000393205		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000332156		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000604798		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000552808		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000548651		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000552435		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000344642	ENST00000602941		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000549405		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000393205		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000332156		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000604798		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000552808		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000548651		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000552435		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000543870	ENST00000602941		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000549405		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000393205		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000332156		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000604798		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000552808		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000548651		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000552435		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
3UTR-intron	ENST00000484271	ENST00000602941		ChiTaRS3.1			BI002606	LDLRAD2	chr1	22148743	-	MGAT4C	chr12	86588704	+
intron-intron	ENST00000217246	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000217246	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000217246	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000217246	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000217246	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000217246	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000310348	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000464883	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000402914	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000378058	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000217246		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000310348		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000464883		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000402914		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000378058		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
intron-intron	ENST00000407045	ENST00000407045		ChiTaRS3.1			DW425296	MACROD2	chr20	14808619	+	MACROD2	chr20	14806744	+
3UTR-3UTR	ENST00000256383	ENST00000256383		ChiTaRS3.1			CA450266	EIF2S1	chr14	67850381	-	EIF2S1	chr14	67850306	+
3UTR-3UTR	ENST00000256383	ENST00000466499		ChiTaRS3.1			CA450266	EIF2S1	chr14	67850381	-	EIF2S1	chr14	67850306	+
3UTR-3UTR	ENST00000466499	ENST00000256383		ChiTaRS3.1			CA450266	EIF2S1	chr14	67850381	-	EIF2S1	chr14	67850306	+
3UTR-3UTR	ENST00000466499	ENST00000466499		ChiTaRS3.1			CA450266	EIF2S1	chr14	67850381	-	EIF2S1	chr14	67850306	+
intron-intron	ENST00000356860	ENST00000356860		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000356253		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000423588		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000464354		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000535308		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000356860		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000356253		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000423588		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000464354		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000535308		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000356860		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000356253		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000423588		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000464354		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000535308		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000356860		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000356253		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000423588		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000464354		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000535308		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000356860		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000356253		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000423588		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000464354		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000535308		ChiTaRS3.1			BF750086	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
In-frame	ENST00000324631	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000324631	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000324631	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377328	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377328	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000352115	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000352115	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000282343	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000282343	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377331	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377331	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000396576	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000396576	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377319	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377319	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377329	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377329	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
In-frame	ENST00000377315	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
5CDS-intron	ENST00000377315	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000324932		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000359171		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000355260		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000397004		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-3CDS	ENST00000467034	ENST00000397007		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-intron	ENST00000467034	ENST00000488828		ChiTaRS3.1			BF922976	CACNB2	chr10	18827246	-	NUP98	chr11	3793058	+
intron-intron	ENST00000571133	ENST00000265753		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-intron	ENST00000571133	ENST00000353999		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-intron	ENST00000571133	ENST00000495187		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-intron	ENST00000542106	ENST00000265753		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-intron	ENST00000542106	ENST00000353999		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-intron	ENST00000542106	ENST00000495187		ChiTaRS3.1			CN419986	RSL1D1	chr16	11931660	-	EIF4H	chr7	73606366	+
intron-3CDS	ENST00000359568	ENST00000444376		ChiTaRS3.1			BE939196	PCNT	chr21	47767183	+	HNRNPU	chr1	245018332	+
intron-3CDS	ENST00000359568	ENST00000283179		ChiTaRS3.1			BE939196	PCNT	chr21	47767183	+	HNRNPU	chr1	245018332	+
intron-3CDS	ENST00000480896	ENST00000444376		ChiTaRS3.1			BE939196	PCNT	chr21	47767183	+	HNRNPU	chr1	245018332	+
intron-3CDS	ENST00000480896	ENST00000283179		ChiTaRS3.1			BE939196	PCNT	chr21	47767183	+	HNRNPU	chr1	245018332	+
intron-intron	ENST00000371743	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000371743	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000450535	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000441722	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000417721	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000458653	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000326677	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000417172		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000361388		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000422748		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000361675		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000361901		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000393118		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000495522		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000424922		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000543443		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
intron-intron	ENST00000428008	ENST00000466704		ChiTaRS3.1			DA834176	ZFAS1	chr20	47895556	+	CALD1	chr7	134570772	+
5CDS-intron	ENST00000372577	ENST00000265260		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
5CDS-intron	ENST00000372577	ENST00000469941		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
5CDS-intron	ENST00000372577	ENST00000296024		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
5CDS-intron	ENST00000372577	ENST00000486406		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
intron-intron	ENST00000550219	ENST00000265260		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
intron-intron	ENST00000550219	ENST00000469941		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
intron-intron	ENST00000550219	ENST00000296024		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
intron-intron	ENST00000550219	ENST00000486406		ChiTaRS3.1			BC071936	NUP188	chr9	131768366	-	PCNP	chr3	101295811	-
intron-intron	ENST00000308406	ENST00000366691		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000308406	ENST00000493528		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000299612	ENST00000366691		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000299612	ENST00000493528		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000571657	ENST00000366691		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000571657	ENST00000493528		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000395602	ENST00000366691		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000395602	ENST00000493528		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000395604	ENST00000366691		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-intron	ENST00000395604	ENST00000493528		ChiTaRS3.1			AW816696	MAPK7	chr17	19283642	-	RHOU	chr1	228823147	-
intron-3UTR	ENST00000287263	ENST00000287263		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000287263	ENST00000330843		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000287263	ENST00000522727		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000287263	ENST00000523182		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000287263	ENST00000524118		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000330843	ENST00000287263		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000330843	ENST00000330843		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000330843	ENST00000522727		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000330843	ENST00000523182		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000330843	ENST00000524118		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000522727	ENST00000287263		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000522727	ENST00000330843		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000522727	ENST00000522727		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000522727	ENST00000523182		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000522727	ENST00000524118		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000523182	ENST00000287263		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000523182	ENST00000330843		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000523182	ENST00000522727		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000523182	ENST00000523182		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000523182	ENST00000524118		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000524118	ENST00000287263		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000524118	ENST00000330843		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000524118	ENST00000522727		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000524118	ENST00000523182		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-intron	ENST00000524118	ENST00000524118		ChiTaRS3.1			BU680326	RAB11FIP1	chr8	37716728	+	RAB11FIP1	chr8	37716834	-
intron-3UTR	ENST00000364938	ENST00000310455		ChiTaRS3.1			BM474506	SNHG3	chr1	28835849	+	PPP1R3B	chr8	8997180	-
intron-3UTR	ENST00000364938	ENST00000519699		ChiTaRS3.1			BM474506	SNHG3	chr1	28835849	+	PPP1R3B	chr8	8997180	-
intron-3CDS	ENST00000392129	ENST00000392129		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000392129	ENST00000367881		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000392129	ENST00000580248		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000392129	ENST00000464650		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000367881	ENST00000392129		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000367881	ENST00000367881		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000367881	ENST00000580248		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000367881	ENST00000464650		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000580248	ENST00000392129		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000580248	ENST00000367881		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000580248	ENST00000580248		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000580248	ENST00000464650		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000464650	ENST00000392129		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000464650	ENST00000367881		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000464650	ENST00000580248		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
intron-3CDS	ENST00000464650	ENST00000464650		ChiTaRS3.1			CA312776	TMCO1	chr1	165697033	+	TMCO1	chr1	165697262	-
3UTR-3UTR	ENST00000373265	ENST00000373265		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
3UTR-3UTR	ENST00000373265	ENST00000373264		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
3UTR-intron	ENST00000373265	ENST00000480353		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
3UTR-3UTR	ENST00000373264	ENST00000373265		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
3UTR-3UTR	ENST00000373264	ENST00000373264		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
3UTR-intron	ENST00000373264	ENST00000480353		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
intron-3UTR	ENST00000480353	ENST00000373265		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
intron-3UTR	ENST00000480353	ENST00000373264		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
intron-intron	ENST00000480353	ENST00000480353		ChiTaRS3.1			BI024596	CDK9	chr9	130552004	-	CDK9	chr9	130552084	+
intron-3CDS	ENST00000441750	ENST00000426496		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-3CDS	ENST00000441750	ENST00000392078		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000441750	ENST00000476522		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000441750	ENST00000367742		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000441750	ENST00000338920		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-3CDS	ENST00000281513	ENST00000426496		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-3CDS	ENST00000281513	ENST00000392078		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000281513	ENST00000476522		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000281513	ENST00000367742		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-intron	ENST00000281513	ENST00000338920		ChiTaRS3.1			BG015456	NBAS	chr2	15319158	+	PRRC2C	chr1	171553138	-
intron-3CDS	ENST00000234195	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000234195	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000234195	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000469469	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000469469	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000469469	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000354545	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000354545	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000354545	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000406384	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000406384	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000406384	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000407257	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000407257	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000407257	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000417700	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000417700	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000417700	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3CDS	ENST00000402091	ENST00000234195		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000469469		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000354545		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000406384		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000407257		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-3UTR	ENST00000402091	ENST00000417700		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000402091	ENST00000402091		ChiTaRS3.1			BF093246	RMDN2	chr2	38230662	-	RMDN2	chr2	38231131	+
intron-intron	ENST00000431446	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000431446	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000431446	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000431446	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000496459	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000496459	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000496459	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000496459	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000570135	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000570135	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000570135	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000570135	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000320676	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000320676	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000320676	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000320676	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000562646	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000562646	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000562646	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000562646	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000565438	ENST00000342679		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000565438	ENST00000534743		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000565438	ENST00000361818		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-intron	ENST00000565438	ENST00000316920		ChiTaRS3.1			DA620086	RBMX	chrX	135961357	-	MAP2K3	chr17	21187958	+
intron-3UTR	ENST00000245441	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000245441	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000245441	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000389868	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000389868	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000389868	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000530997	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000530997	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000530997	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000382043	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000382043	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382043	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000382041	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000382041	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000382041	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000324330	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000324330	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000324330	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000453196	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000453196	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000453196	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000486200	ENST00000245441		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-3UTR	ENST00000486200	ENST00000389868		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000530997		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000382043		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000382041		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000324330		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000453196		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
intron-intron	ENST00000486200	ENST00000486200		ChiTaRS3.1			BU609146	NIN	chr14	51187241	+	NIN	chr14	51187329	-
5UTR-3UTR	ENST00000373880	ENST00000227507		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
5UTR-intron	ENST00000373880	ENST00000536559		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
5UTR-3UTR	ENST00000433653	ENST00000227507		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
5UTR-intron	ENST00000433653	ENST00000536559		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
intron-3UTR	ENST00000373878	ENST00000227507		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
intron-intron	ENST00000373878	ENST00000536559		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
intron-3UTR	ENST00000472199	ENST00000227507		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
intron-intron	ENST00000472199	ENST00000536559		ChiTaRS3.1			BE930736	PHYHIPL	chr10	60936575	-	CCND1	chr11	69468043	-
intron-intron	ENST00000545334	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000545334	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000545334	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000537927	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000318304	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000535047	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000542629	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
5CDS-intron	ENST00000228425	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000389048		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000431873		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000541633	ENST00000498037		ChiTaRS3.1			AB600939	PPFIBP1	chr12	27807749	+	ALK	chr2	29447593	-
intron-intron	ENST00000589222	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000589222	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000589222	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000407086	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000407086	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000407086	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000390652	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000390652	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000390652	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000408905	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000408905	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000408905	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588462	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588462	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588462	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585744	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585744	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585744	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588874	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588874	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000588874	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585812	ENST00000361368		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585812	ENST00000361125		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000585812	ENST00000480055		ChiTaRS3.1			CD675856	BCAS3	chr17	59308954	+	SMURF1	chr7	98720964	-
intron-intron	ENST00000544392	ENST00000544392		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-3UTR	ENST00000544392	ENST00000369151		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-intron	ENST00000544392	ENST00000340214		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-intron	ENST00000369151	ENST00000544392		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-3UTR	ENST00000369151	ENST00000369151		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-intron	ENST00000369151	ENST00000340214		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-intron	ENST00000340214	ENST00000544392		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-3UTR	ENST00000340214	ENST00000369151		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-intron	ENST00000340214	ENST00000340214		ChiTaRS3.1			AI829926	CACUL1	chr10	120514198	+	CACUL1	chr10	120443446	+
intron-3CDS	ENST00000375068	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375068	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375068	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375068	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000375068	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000375053	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375053	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375053	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375053	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000375053	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000347546	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000347546	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000347546	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000347546	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000347546	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000375062	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375062	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375062	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375062	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000375062	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000218439	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000218439	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000218439	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000218439	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000218439	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000375058	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375058	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375058	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375058	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000375058	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000375060	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375060	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375060	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000375060	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000375060	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000396224	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000396224	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000396224	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000396224	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000396224	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-3CDS	ENST00000497484	ENST00000295470		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000497484	ENST00000349655		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000497484	ENST00000602300		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-intron	ENST00000497484	ENST00000502762		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
intron-5UTR	ENST00000497484	ENST00000514511		ChiTaRS3.1			BF376806	MAGED2	chrX	54839755	-	HNRNPDL	chr4	83347785	-
5CDS-intron	ENST00000340384	ENST00000396986		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-3UTR	ENST00000340384	ENST00000300730		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000396993		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000396991		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000532017		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000465307		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000493547		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-3UTR	ENST00000340384	ENST00000278243		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000463452		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000479072		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
5CDS-intron	ENST00000340384	ENST00000496834		ChiTaRS3.1			BQ319576	TUBB4B	chr9	140138159	+	PGAP2	chr11	3847574	-
intron-3CDS	ENST00000339859	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000339859	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000339859	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000339859	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000339859	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000339859	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000339859	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000408019	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000408019	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000408019	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000408019	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000408019	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000408019	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000408019	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000428547	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000428547	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000428547	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000428547	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000428547	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000428547	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000428547	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000394811	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000394811	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000394811	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000394811	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000394811	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000394811	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000394811	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000497106	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000497106	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000497106	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000497106	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000497106	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000497106	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000497106	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000422491	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000422491	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000422491	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000422491	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000422491	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000422491	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000422491	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000319786	ENST00000339859		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-3CDS	ENST00000319786	ENST00000408019		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000319786	ENST00000428547		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000319786	ENST00000394811		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-5UTR	ENST00000319786	ENST00000497106		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000319786	ENST00000422491		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000319786	ENST00000319786		ChiTaRS3.1			AW836906	USP54	chr10	75297720	+	USP54	chr10	75302603	-
intron-intron	ENST00000334464	ENST00000306071		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000334464	ENST00000536404		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000334464	ENST00000576360		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000334464	ENST00000575379		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000482496	ENST00000306071		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000482496	ENST00000536404		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000482496	ENST00000576360		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
intron-intron	ENST00000482496	ENST00000575379		ChiTaRS3.1			AW062966	PDZD8	chr10	119043511	-	CHRNB1	chr17	7350764	+
3UTR-intron	ENST00000528057	ENST00000358204		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000528057	ENST00000537767		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000528057	ENST00000393481		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000528057	ENST00000485009		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000334205	ENST00000358204		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000334205	ENST00000537767		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000334205	ENST00000393481		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000334205	ENST00000485009		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000294261	ENST00000358204		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000294261	ENST00000537767		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000294261	ENST00000393481		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
3UTR-intron	ENST00000294261	ENST00000485009		ChiTaRS3.1			AI688216	RPS6KA4	chr11	64139362	-	TES	chr7	115851617	-
intron-intron	ENST00000261799	ENST00000373625		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000261799	ENST00000537234		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000261799	ENST00000469790		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000261799	ENST00000545542		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000523456	ENST00000373625		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000523456	ENST00000537234		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000523456	ENST00000469790		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
intron-intron	ENST00000523456	ENST00000545542		ChiTaRS3.1			BI050756	PDGFRB	chr5	149494107	+	KPNA6	chr1	32628323	-
In-frame	ENST00000313143	ENST00000389757		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
In-frame	ENST00000313143	ENST00000389759		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
5CDS-intron	ENST00000313143	ENST00000495123		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
In-frame	ENST00000431765	ENST00000389757		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
In-frame	ENST00000431765	ENST00000389759		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
5CDS-intron	ENST00000431765	ENST00000495123		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
intron-3CDS	ENST00000462665	ENST00000389757		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
intron-3CDS	ENST00000462665	ENST00000389759		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
intron-intron	ENST00000462665	ENST00000495123		ChiTaRS3.1			AW842036	DVL3	chr3	183885479	-	PKP4	chr2	159389774	+
intron-intron	ENST00000354329	ENST00000295897		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000415165		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000503124		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000509063		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000401494		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000505649		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000295897		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000415165		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000503124		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000509063		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000401494		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000505649		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000295897		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000415165		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000503124		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000509063		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000401494		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000505649		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000295897		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000415165		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000503124		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000509063		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000401494		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000505649		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000295897		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000415165		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000503124		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000509063		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000401494		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000505649		ChiTaRS3.1			BG563936	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-3UTR	ENST00000425690	ENST00000393784		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000425690	ENST00000519860		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000425690	ENST00000523291		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000425690	ENST00000326654		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-3UTR	ENST00000344956	ENST00000393784		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000344956	ENST00000519860		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000344956	ENST00000523291		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000344956	ENST00000326654		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-3UTR	ENST00000403059	ENST00000393784		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000403059	ENST00000519860		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000403059	ENST00000523291		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000403059	ENST00000326654		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-3UTR	ENST00000406449	ENST00000393784		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000406449	ENST00000519860		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000406449	ENST00000523291		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000406449	ENST00000326654		ChiTaRS3.1			AV709596	PVR	chr19	45153712	-	ERGIC1	chr5	172379471	+
intron-intron	ENST00000269346	ENST00000341516		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000269346	ENST00000554215		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000269346	ENST00000556847		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000269346	ENST00000557386		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000269346	ENST00000389997		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000269346	ENST00000553293		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000341516		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000554215		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000556847		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000557386		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000389997		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000529107	ENST00000553293		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000341516		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000554215		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000556847		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000557386		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000389997		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000534346	ENST00000553293		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000341516		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000554215		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000556847		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000557386		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000389997		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-intron	ENST00000441391	ENST00000553293		ChiTaRS3.1			CA428136	TTYH2	chr17	72253037	-	DCAF5	chr14	69544391	+
intron-3UTR	ENST00000382247	ENST00000367763		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000382247	ENST00000367762		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000382247	ENST00000465717		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-3UTR	ENST00000536863	ENST00000367763		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000536863	ENST00000367762		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000536863	ENST00000465717		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-3UTR	ENST00000507768	ENST00000367763		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000507768	ENST00000367762		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000507768	ENST00000465717		ChiTaRS3.1			AW131866	DCAF16	chr4	17802442	+	GORAB	chr1	170522255	+
intron-intron	ENST00000375533	ENST00000375533		ChiTaRS3.1			BX113436	BAMBI	chr10	28967855	-	BAMBI	chr10	28967681	+
intron-intron	ENST00000350026	ENST00000244007		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000350026	ENST00000373272		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000350026	ENST00000373271		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000350026	ENST00000608689		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000346085	ENST00000244007		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000346085	ENST00000373272		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000346085	ENST00000373271		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000346085	ENST00000608689		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000367148	ENST00000244007		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000367148	ENST00000373272		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000367148	ENST00000373271		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000367148	ENST00000608689		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000275248	ENST00000244007		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000275248	ENST00000373272		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000275248	ENST00000373271		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000275248	ENST00000608689		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000478761	ENST00000244007		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000478761	ENST00000373272		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000478761	ENST00000373271		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-intron	ENST00000478761	ENST00000608689		ChiTaRS3.1			BF770556	ARID1B	chr6	157110928	-	PLCG1	chr20	39799456	-
intron-3CDS	ENST00000052754	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000052754	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000052754	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000425043	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000425043	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000393155	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000393155	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000228329	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000228329	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000303320	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000303320	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000552962	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000552962	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000441303	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000441303	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000420120	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000420120	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000547568	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000547568	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000456569	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000456569	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546370	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000546370	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000546745	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000546745	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000550099	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000550099	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000551354	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000551354	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000052754		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000425043		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000393155		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000228329		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000303320		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000552962		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000441303		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000420120		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000547568		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000456569		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000546370		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000546745		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000550099		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-3CDS	ENST00000548768	ENST00000551354		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
intron-intron	ENST00000548768	ENST00000548768		ChiTaRS3.1			AI752586	DCN	chr12	91576581	+	DCN	chr12	91572313	-
3UTR-intron	ENST00000560302	ENST00000440909		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000448921		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000437397		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-intron	ENST00000560302	ENST00000355814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000393087		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000393088		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000404814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000449399		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-intron	ENST00000560302	ENST00000402629		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
3UTR-5UTR	ENST00000560302	ENST00000555289		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394518	ENST00000440909		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000448921		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000437397		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394518	ENST00000355814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000393087		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000393088		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000404814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000449399		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394518	ENST00000402629		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394518	ENST00000555289		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000361243	ENST00000440909		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000448921		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000437397		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000361243	ENST00000355814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000393087		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000393088		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000404814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000449399		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000361243	ENST00000402629		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000361243	ENST00000555289		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000560579	ENST00000440909		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000448921		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000437397		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000560579	ENST00000355814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000393087		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000393088		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000404814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000449399		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000560579	ENST00000402629		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000560579	ENST00000555289		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394510	ENST00000440909		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000448921		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000437397		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394510	ENST00000355814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000393087		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000393088		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000404814		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000449399		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000394510	ENST00000402629		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-5UTR	ENST00000394510	ENST00000555289		ChiTaRS3.1			AF113676	AKAP13	chr15	86077413	-	SERPINA1	chr14	94854940	-
intron-intron	ENST00000244769	ENST00000244769		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000244769	ENST00000436367		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000244769	ENST00000467008		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000244769		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000436367		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000467008		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000244769		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000436367		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000467008		ChiTaRS3.1			AU119016	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000283147	ENST00000283147		ChiTaRS3.1			BF368716	BMP6	chr6	7775894	+	BMP6	chr6	7776198	-
intron-intron	ENST00000324331	ENST00000324331		ChiTaRS3.1			AW850186	FARS2	chr6	5627765	-	FARS2	chr6	5632278	+
intron-intron	ENST00000324331	ENST00000274680		ChiTaRS3.1			AW850186	FARS2	chr6	5627765	-	FARS2	chr6	5632278	+
intron-intron	ENST00000274680	ENST00000324331		ChiTaRS3.1			AW850186	FARS2	chr6	5627765	-	FARS2	chr6	5632278	+
intron-intron	ENST00000274680	ENST00000274680		ChiTaRS3.1			AW850186	FARS2	chr6	5627765	-	FARS2	chr6	5632278	+
intron-intron	ENST00000280871	ENST00000287878		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000280871	ENST00000418337		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000280871	ENST00000433631		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000280871	ENST00000492843		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000280871	ENST00000392801		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000280871	ENST00000461529		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000287878		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000418337		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000433631		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000492843		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000392801		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000380858	ENST00000461529		ChiTaRS3.1			AK130536	SLC2A13	chr12	40416841	-	PRKAG2	chr7	151566014	-
intron-intron	ENST00000466764	ENST00000466764		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000466764	ENST00000376759		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000466764	ENST00000430348		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000466764	ENST00000376755		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000466764	ENST00000354480		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000376759	ENST00000466764		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376759	ENST00000376759		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376759	ENST00000430348		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000376759	ENST00000376755		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376759	ENST00000354480		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000430348	ENST00000466764		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000430348	ENST00000376759		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000430348	ENST00000430348		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000430348	ENST00000376755		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000430348	ENST00000354480		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000376755	ENST00000466764		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376755	ENST00000376759		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376755	ENST00000430348		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000376755	ENST00000376755		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000376755	ENST00000354480		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000354480	ENST00000466764		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000354480	ENST00000376759		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000354480	ENST00000430348		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-intron	ENST00000354480	ENST00000376755		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3UTR	ENST00000354480	ENST00000354480		ChiTaRS3.1			H20596	RBM3	chrX	48438805	+	RBM3	chrX	48436436	+
intron-3CDS	ENST00000429711	ENST00000322088		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000429711	ENST00000444322		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000429711	ENST00000477989		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000429711	ENST00000462990		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000429711	ENST00000473455		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000396957	ENST00000322088		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000396957	ENST00000444322		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396957	ENST00000477989		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396957	ENST00000462990		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396957	ENST00000473455		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000273223	ENST00000322088		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000273223	ENST00000444322		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000273223	ENST00000477989		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000273223	ENST00000462990		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000273223	ENST00000473455		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000435983	ENST00000322088		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000435983	ENST00000444322		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000435983	ENST00000477989		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000435983	ENST00000462990		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000435983	ENST00000473455		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000396953	ENST00000322088		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000396953	ENST00000444322		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396953	ENST00000477989		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396953	ENST00000462990		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-intron	ENST00000396953	ENST00000473455		ChiTaRS3.1			W48816	RPL32	chr3	12877645	+	PPP2R1A	chr19	52719874	-
intron-3CDS	ENST00000255557	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000255557	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-intron	ENST00000255557	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000577615	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-intron	ENST00000577615	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000268942	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-intron	ENST00000268942	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-3CDS	ENST00000359042	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
3UTR-intron	ENST00000359042	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000426147	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-intron	ENST00000426147	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000535032	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-intron	ENST00000535032	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000420083		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000449870		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000318511		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000407004		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000589998		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000250241		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000592763		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000588657		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-3CDS	ENST00000582793	ENST00000590261		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
intron-intron	ENST00000582793	ENST00000586544		ChiTaRS3.1			CB218536	C17orf80	chr17	71244788	-	ILF3	chr19	10781860	-
Frame-shit	ENST00000368357	ENST00000529410		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000533560		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000361794		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000368139		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000526019		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000368357	ENST00000368136		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000529410		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000533560		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000361794		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000368139		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000526019		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
Frame-shit	ENST00000392477	ENST00000368136		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000529410		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000533560		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000361794		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000368139		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000526019		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
5UTR-3CDS	ENST00000229634	ENST00000368136		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000529410		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000533560		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000361794		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000368139		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000526019		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
3UTR-3CDS	ENST00000487635	ENST00000368136		ChiTaRS3.1			AK092756	NCOA7	chr6	126136552	+	L3MBTL3	chr6	130387497	+
intron-3CDS	ENST00000509108	ENST00000370096		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000509108	ENST00000353414		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000509108	ENST00000358392		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000509108	ENST00000512756		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000509108	ENST00000461720		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000306193	ENST00000370096		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000306193	ENST00000353414		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000306193	ENST00000358392		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000306193	ENST00000512756		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000306193	ENST00000461720		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000504480	ENST00000370096		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000504480	ENST00000353414		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-3CDS	ENST00000504480	ENST00000358392		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000504480	ENST00000512756		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000504480	ENST00000461720		ChiTaRS3.1			AW175786	CBR4	chr4	169917061	+	COL11A1	chr1	103488351	+
intron-intron	ENST00000354891	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000354891	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-3UTR	ENST00000322350	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000336740	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000397202	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000397210	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000506135	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000354891		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000514476	ENST00000322350		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000336740		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000397202		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000397210		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000506135		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000514476		ChiTaRS3.1			AL048116	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000299441	ENST00000252996		ChiTaRS3.1			AI633846	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000299441	ENST00000609045		ChiTaRS3.1			AI633846	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000367988	ENST00000432884		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367988	ENST00000262942		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367988	ENST00000471960		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000432884		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000262942		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000545897	ENST00000471960		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000432884		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000262942		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000474486	ENST00000471960		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000432884		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000262942		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000367987	ENST00000471960		ChiTaRS3.1			BE720796	TOMM40L	chr1	161196443	-	ARPC1A	chr7	98963510	+
intron-intron	ENST00000606975	ENST00000355875		ChiTaRS3.1			BF762716	RPL23AP53	chr8	169820	-	SDCCAG8	chr1	243529496	+
intron-intron	ENST00000606975	ENST00000366541		ChiTaRS3.1			BF762716	RPL23AP53	chr8	169820	-	SDCCAG8	chr1	243529496	+
intron-intron	ENST00000606975	ENST00000343783		ChiTaRS3.1			BF762716	RPL23AP53	chr8	169820	-	SDCCAG8	chr1	243529496	+
intron-intron	ENST00000606975	ENST00000391846		ChiTaRS3.1			BF762716	RPL23AP53	chr8	169820	-	SDCCAG8	chr1	243529496	+
intron-intron	ENST00000606975	ENST00000496361		ChiTaRS3.1			BF762716	RPL23AP53	chr8	169820	-	SDCCAG8	chr1	243529496	+
5CDS-5UTR	ENST00000535572	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000535572	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000535572	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000537687	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000537687	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000537687	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000315939	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000315939	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000315939	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000447667	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000447667	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000447667	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000530271	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000530271	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000530271	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000540360	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000540360	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000540360	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000340908	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000340908	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
5CDS-5UTR	ENST00000340908	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000574564	ENST00000395319		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000574564	ENST00000395321		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-5UTR	ENST00000574564	ENST00000226253		ChiTaRS3.1			DA088736	WNK1	chr12	987436	+	ALDOC	chr17	26903883	-
intron-3CDS	ENST00000539907	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000539907	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000539907	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000539907	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000539907	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000539907	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000540617	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000540617	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000540617	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000540617	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000540617	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000540617	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000374840	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374840	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374840	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374840	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374840	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374840	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000468526	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000468526	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000468526	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000468526	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000468526	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000468526	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000374832	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374832	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374832	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374832	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374832	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374832	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000425315	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000425315	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000425315	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000425315	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000425315	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000425315	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000374830	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374830	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374830	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374830	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374830	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374830	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-3CDS	ENST00000374829	ENST00000264122		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374829	ENST00000407712		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374829	ENST00000394027		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374829	ENST00000403724		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374829	ENST00000405772		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
intron-intron	ENST00000374829	ENST00000545639		ChiTaRS3.1			BF851316	ALPL	chr1	21844162	-	CBLB	chr3	105421229	+
3UTR-3CDS	ENST00000352456	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000352456	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000352456	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000352456	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000352456	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000352456	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000352456	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000352456	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000595018	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000595018	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000595018	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000595018	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000595018	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000595018	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000595018	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000595018	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000392006	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000392006	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000392006	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000392006	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000392006	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000392006	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000392006	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000392006	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000378215	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000378215	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000378215	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000378215	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000378215	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000378215	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000378215	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000378215	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000602130	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000602130	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000602130	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000602130	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000602130	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000602130	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000602130	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000602130	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000593587	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000593587	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000593587	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000593587	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000593587	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000593587	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000593587	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000593587	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000263367	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000263367	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-3CDS	ENST00000263367	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000263367	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000263367	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000263367	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000263367	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
3UTR-intron	ENST00000263367	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-3CDS	ENST00000594207	ENST00000563679		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-3CDS	ENST00000594207	ENST00000325823		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-3CDS	ENST00000594207	ENST00000447912		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-intron	ENST00000594207	ENST00000535621		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-intron	ENST00000594207	ENST00000455313		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-intron	ENST00000594207	ENST00000396410		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-intron	ENST00000594207	ENST00000569715		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-intron	ENST00000594207	ENST00000450288		ChiTaRS3.1			AI933296	HNRNPUL1	chr19	41812724	-	PDXDC1	chr16	15125672	-
intron-3CDS	ENST00000295688	ENST00000295688		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000295688	ENST00000368259		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000295688	ENST00000368261		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000295688	ENST00000472765		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000295688	ENST00000368256		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368259	ENST00000295688		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368259	ENST00000368259		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368259	ENST00000368261		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368259	ENST00000472765		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000368259	ENST00000368256		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368261	ENST00000295688		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368261	ENST00000368259		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368261	ENST00000368261		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368261	ENST00000472765		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000368261	ENST00000368256		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000472765	ENST00000295688		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000472765	ENST00000368259		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000472765	ENST00000368261		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000472765	ENST00000472765		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000472765	ENST00000368256		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368256	ENST00000295688		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368256	ENST00000368259		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368256	ENST00000368261		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-3CDS	ENST00000368256	ENST00000472765		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000368256	ENST00000368256		ChiTaRS3.1			BE783136	CCT3	chr1	156303425	+	CCT3	chr1	156290710	-
intron-intron	ENST00000356840	ENST00000356840		ChiTaRS3.1			AA847526	MYLIP	chr6	16148333	+	MYLIP	chr6	16148479	-
intron-intron	ENST00000356840	ENST00000349606		ChiTaRS3.1			AA847526	MYLIP	chr6	16148333	+	MYLIP	chr6	16148479	-
3UTR-intron	ENST00000349606	ENST00000356840		ChiTaRS3.1			AA847526	MYLIP	chr6	16148333	+	MYLIP	chr6	16148479	-
3UTR-intron	ENST00000349606	ENST00000349606		ChiTaRS3.1			AA847526	MYLIP	chr6	16148333	+	MYLIP	chr6	16148479	-
In-frame	ENST00000338970	ENST00000338970		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
Frame-shit	ENST00000338970	ENST00000396203		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
5CDS-3UTR	ENST00000338970	ENST00000416518		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
5CDS-intron	ENST00000338970	ENST00000461368		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
Frame-shit	ENST00000396203	ENST00000338970		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
Frame-shit	ENST00000396203	ENST00000396203		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
5CDS-3UTR	ENST00000396203	ENST00000416518		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
5CDS-intron	ENST00000396203	ENST00000461368		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
3UTR-3CDS	ENST00000416518	ENST00000338970		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
3UTR-3CDS	ENST00000416518	ENST00000396203		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
3UTR-3UTR	ENST00000416518	ENST00000416518		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
3UTR-intron	ENST00000416518	ENST00000461368		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
intron-3CDS	ENST00000461368	ENST00000338970		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
intron-3CDS	ENST00000461368	ENST00000396203		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
intron-3UTR	ENST00000461368	ENST00000416518		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
intron-intron	ENST00000461368	ENST00000461368		ChiTaRS3.1			BU608656	RPL14	chr3	40503457	-	RPL14	chr3	40503485	+
intron-intron	ENST00000265107	ENST00000396821		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000265107	ENST00000444597		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000265107	ENST00000381633		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000265107	ENST00000432525		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000504564	ENST00000396821		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000504564	ENST00000444597		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000504564	ENST00000381633		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000504564	ENST00000432525		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000510699	ENST00000396821		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000510699	ENST00000444597		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000510699	ENST00000381633		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-intron	ENST00000510699	ENST00000432525		ChiTaRS3.1			BI034946	WDR70	chr5	37433943	-	DDX17	chr22	38885837	+
intron-3UTR	ENST00000577830	ENST00000577830		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000577830	ENST00000407144		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000577830	ENST00000360238		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000577830	ENST00000577840		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-5UTR	ENST00000577830	ENST00000578357		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000407144	ENST00000577830		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000407144	ENST00000407144		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000407144	ENST00000360238		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000407144	ENST00000577840		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-5UTR	ENST00000407144	ENST00000578357		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000360238	ENST00000577830		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000360238	ENST00000407144		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000360238	ENST00000360238		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000360238	ENST00000577840		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-5UTR	ENST00000360238	ENST00000578357		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000577840	ENST00000577830		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000577840	ENST00000407144		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000577840	ENST00000360238		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000577840	ENST00000577840		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-5UTR	ENST00000577840	ENST00000578357		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000578357	ENST00000577830		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000578357	ENST00000407144		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-3UTR	ENST00000578357	ENST00000360238		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000578357	ENST00000577840		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-5UTR	ENST00000578357	ENST00000578357		ChiTaRS3.1			BF684426	CUEDC1	chr17	55940349	-	CUEDC1	chr17	55940527	-
intron-intron	ENST00000318560	ENST00000305877		ChiTaRS3.1			JQ425240	ABL1	chr9	133686164	+	BCR	chr22	23632728	+
intron-intron	ENST00000318560	ENST00000359540		ChiTaRS3.1			JQ425240	ABL1	chr9	133686164	+	BCR	chr22	23632728	+
intron-intron	ENST00000318560	ENST00000398512		ChiTaRS3.1			JQ425240	ABL1	chr9	133686164	+	BCR	chr22	23632728	+
intron-intron	ENST00000318560	ENST00000436990		ChiTaRS3.1			JQ425240	ABL1	chr9	133686164	+	BCR	chr22	23632728	+
intron-intron	ENST00000298248	ENST00000550418		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000553186		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000547372		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000422070		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000535565		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000547427		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000552089		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000547338		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000436368		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000311745		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000355637		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000298248	ENST00000340209		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000550418		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000553186		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000547372		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000422070		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000535565		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000547427		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000552089		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000547338		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000436368		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000311745		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000355637		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000382812	ENST00000340209		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000550418		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000553186		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000547372		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000422070		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000535565		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000547427		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000552089		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000547338		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000436368		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000311745		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000355637		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000480748	ENST00000340209		ChiTaRS3.1			T05216	CRYL1	chr13	21086541	+	RBFOX1	chr16	7198872	-
intron-intron	ENST00000436443	ENST00000490337		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000389636		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000471742		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000302490		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000389634		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000436443	ENST00000497291		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000490337		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000389636		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000471742		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000302490		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000389634		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000342788	ENST00000497291		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000490337		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000389636		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000471742		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000302490		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000389634		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000402597	ENST00000497291		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000490337		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000389636		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000471742		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000302490		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000389634		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000484474	ENST00000497291		ChiTaRS3.1			BF108506	ERBB4	chr2	213122214	-	KCNAB1	chr3	156192469	-
intron-intron	ENST00000378004	ENST00000378004		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000378004	ENST00000274498		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000378004	ENST00000486650		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000274498	ENST00000378004		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000274498	ENST00000274498		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000274498	ENST00000486650		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000486650	ENST00000378004		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000486650	ENST00000274498		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-intron	ENST00000486650	ENST00000486650		ChiTaRS3.1			EL584886	ARHGAP26	chr5	142196463	-	ARHGAP26	chr5	142195600	+
intron-5UTR	ENST00000389722	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000389722	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000389722	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000556626	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000556626	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000556626	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000389721	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000389721	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000389721	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000542895	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000542895	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000542895	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000389720	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000389720	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000389720	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000342835	ENST00000280346		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-5UTR	ENST00000342835	ENST00000393051		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-intron	ENST00000342835	ENST00000537636		ChiTaRS3.1			AI022776	SPTB	chr14	65319074	+	DLAT	chr11	111896173	+
intron-3CDS	ENST00000503238	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000503238	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000358350	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000358350	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000537810	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000537810	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000264319	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000264319	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000507711	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000507711	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000514783	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000514783	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000507873	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000507873	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3CDS	ENST00000506685	ENST00000374550		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-3UTR	ENST00000506685	ENST00000482370		ChiTaRS3.1			AU100496	FRYL	chr4	48531069	+	RPL11	chr1	24019132	+
intron-intron	ENST00000537403	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000537403	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000307712	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000307712	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000536508	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000536508	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000545328	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000545328	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000553925	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000553925	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000548032	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000548032	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000557280	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000557280	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000553970	ENST00000372970		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000553970	ENST00000255174		ChiTaRS3.1			BQ647036	SEC23A	chr14	39572252	-	OSER1	chr20	42839097	-
intron-intron	ENST00000369911	ENST00000369911		ChiTaRS3.1			AW850806	DNAJC5	chr20	62534626	+	DNAJC5	chr20	62528912	+
intron-intron	ENST00000369911	ENST00000360864		ChiTaRS3.1			AW850806	DNAJC5	chr20	62534626	+	DNAJC5	chr20	62528912	+
intron-intron	ENST00000360864	ENST00000369911		ChiTaRS3.1			AW850806	DNAJC5	chr20	62534626	+	DNAJC5	chr20	62528912	+
intron-intron	ENST00000360864	ENST00000360864		ChiTaRS3.1			AW850806	DNAJC5	chr20	62534626	+	DNAJC5	chr20	62528912	+
intron-3CDS	ENST00000583578	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000583578	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000583578	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000583578	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000578092	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000578092	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000578092	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000578092	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000578613	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000578613	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000578613	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000578613	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000584910	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000584910	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000584910	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000584910	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000582452	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000582452	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000582452	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000582452	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000584120	ENST00000309971		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-3CDS	ENST00000584120	ENST00000372770		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-5UTR	ENST00000584120	ENST00000539582		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000584120	ENST00000494417		ChiTaRS3.1			DB025846	LINC00908	chr18	74283136	+	GLE1	chr9	131271149	+
intron-intron	ENST00000274695	ENST00000422945		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000556068		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000554442		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000328724		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000350249		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000445439		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000334743		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000557095		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000556260		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000556946		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000274695	ENST00000557714		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000422945		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000556068		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000554442		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000328724		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000350249		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000445439		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000334743		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000557095		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000556260		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000556946		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378624	ENST00000557714		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000422945		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000556068		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000554442		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000328724		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000350249		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000445439		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000334743		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000557095		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000556260		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000556946		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000378610	ENST00000557714		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000422945		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000556068		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000554442		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000328724		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000350249		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000445439		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000334743		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000557095		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000556260		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000556946		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-intron	ENST00000476517	ENST00000557714		ChiTaRS3.1			BQ717736	CDKAL1	chr6	21003468	+	PPP2R5C	chr14	102391037	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766326	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766326	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000337318	ENST00000337318		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000337318	ENST00000392754		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000337318	ENST00000280780		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000392754	ENST00000337318		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000392754	ENST00000392754		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000392754	ENST00000280780		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000280780	ENST00000337318		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000280780	ENST00000392754		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-intron	ENST00000280780	ENST00000280780		ChiTaRS3.1			CV419906	FAM53B	chr10	126394512	+	FAM53B	chr10	126395034	-
intron-3CDS	ENST00000323786	ENST00000323786		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000323786	ENST00000393612		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000323786	ENST00000564653		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-3CDS	ENST00000393612	ENST00000323786		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000393612	ENST00000393612		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000393612	ENST00000564653		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-3CDS	ENST00000564653	ENST00000323786		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000564653	ENST00000393612		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
intron-intron	ENST00000564653	ENST00000564653		ChiTaRS3.1			BG983246	COG4	chr16	70543265	+	COG4	chr16	70517847	+
5CDS-5UTR	ENST00000336761	ENST00000597960		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000336761	ENST00000610101		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000336761	ENST00000596558		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000336761	ENST00000222308		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000336761	ENST00000608443		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000336761	ENST00000453489		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000597960		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000610101		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000596558		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000222308		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000608443		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
5CDS-5UTR	ENST00000233078	ENST00000453489		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000597960		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000610101		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000596558		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000222308		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000608443		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-5UTR	ENST00000586579	ENST00000453489		ChiTaRS3.1			BQ717786	DAZAP1	chr19	1407802	+	FKBP8	chr19	18652806	-
3UTR-3UTR	ENST00000329565	ENST00000329565		ChiTaRS3.1			AA448746	SNN	chr16	11772492	+	SNN	chr16	11772052	+
3UTR-3CDS	ENST00000053867	ENST00000169298		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000053867	ENST00000457772		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000053867	ENST00000448044		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000053867	ENST00000487031		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000169298		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000457772		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-3CDS	ENST00000589265	ENST00000448044		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000589265	ENST00000487031		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000169298		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000457772		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-3CDS	ENST00000589923	ENST00000448044		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
intron-intron	ENST00000589923	ENST00000487031		ChiTaRS3.1			AA705426	GRN	chr17	42430358	-	ST6GAL1	chr3	186792004	-
3UTR-intron	ENST00000487694	ENST00000409682		ChiTaRS3.1			BQ337746	ROBO2	chr3	77695522	+	PSMD14	chr2	162184290	-
3UTR-intron	ENST00000461745	ENST00000409682		ChiTaRS3.1			BQ337746	ROBO2	chr3	77695522	+	PSMD14	chr2	162184290	-
3UTR-intron	ENST00000332191	ENST00000409682		ChiTaRS3.1			BQ337746	ROBO2	chr3	77695522	+	PSMD14	chr2	162184290	-
intron-intron	ENST00000469233	ENST00000409682		ChiTaRS3.1			BQ337746	ROBO2	chr3	77695522	+	PSMD14	chr2	162184290	-
intron-intron	ENST00000391743	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000348231	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000391742	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000434277	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000313038	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000474878	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-intron	ENST00000463489	ENST00000362582		ChiTaRS3.1			AA991196	LAIR1	chr19	54866472	+	SNHG17	chr20	37050671	+
intron-3CDS	ENST00000291568	ENST00000291568		ChiTaRS3.1			AW265426	CSTB	chr21	45194579	+	CSTB	chr21	45194143	-
intron-intron	ENST00000397601	ENST00000397601		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000397601	ENST00000343600		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000397601	ENST00000345429		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000397601	ENST00000376673		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000397601	ENST00000445661		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000343600	ENST00000397601		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000343600	ENST00000343600		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000343600	ENST00000345429		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000343600	ENST00000376673		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000343600	ENST00000445661		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000345429	ENST00000397601		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000345429	ENST00000343600		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000345429	ENST00000345429		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000345429	ENST00000376673		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000345429	ENST00000445661		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000376673	ENST00000397601		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000376673	ENST00000343600		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000376673	ENST00000345429		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000376673	ENST00000376673		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000376673	ENST00000445661		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000445661	ENST00000397601		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000445661	ENST00000343600		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000445661	ENST00000345429		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000445661	ENST00000376673		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
intron-intron	ENST00000445661	ENST00000445661		ChiTaRS3.1			AA225376	MBNL2	chr13	98006253	+	MBNL2	chr13	98006286	-
In-frame	ENST00000233114	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000233114	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000233114	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000233114	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000233114	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000233114	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000233114	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409908	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000409908	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000409476	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000409476	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000539945	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000539945	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000544381	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000544381	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
In-frame	ENST00000394423	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
5CDS-intron	ENST00000394423	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000233114		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000409908		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000409476		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000539945		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000544381		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3CDS	ENST00000462944	ENST00000394423		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-intron	ENST00000462944	ENST00000462944		ChiTaRS3.1			BG290076	MDH1	chr2	63833146	+	MDH1	chr2	63831899	+
intron-3UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
intron-3UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			BF082446	TIMP2	chr17	76850803	+	TIMP2	chr17	76849938	+
In-frame	ENST00000353703	ENST00000353703		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
5CDS-3UTR	ENST00000353703	ENST00000479421		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
5CDS-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
3UTR-3CDS	ENST00000479421	ENST00000353703		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
3UTR-3UTR	ENST00000479421	ENST00000479421		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
3UTR-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
In-frame	ENST00000372839	ENST00000353703		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
5CDS-3UTR	ENST00000372839	ENST00000479421		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
5CDS-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			CN276496	YWHAB	chr20	43534683	-	YWHAB	chr20	43530285	+
intron-3CDS	ENST00000394480	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000557856	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000357724	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000355254	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000360948	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000542733	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558676	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000317501	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558306	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000540489	ENST00000335754		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000488802		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000482349		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000231909		ChiTaRS3.1			AI671176	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
3UTR-3CDS	ENST00000375980	ENST00000455789		ChiTaRS3.1			AA582766	EFHD2	chr1	15756466	-	SP3	chr2	174777966	+
3UTR-3CDS	ENST00000375980	ENST00000310015		ChiTaRS3.1			AA582766	EFHD2	chr1	15756466	-	SP3	chr2	174777966	+
3UTR-3CDS	ENST00000375980	ENST00000418194		ChiTaRS3.1			AA582766	EFHD2	chr1	15756466	-	SP3	chr2	174777966	+
3UTR-intron	ENST00000375980	ENST00000483084		ChiTaRS3.1			AA582766	EFHD2	chr1	15756466	-	SP3	chr2	174777966	+
intron-intron	ENST00000391976	ENST00000279873		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000391976	ENST00000309334		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000310931	ENST00000279873		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000310931	ENST00000309334		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000391975	ENST00000279873		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000391975	ENST00000309334		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000427183	ENST00000279873		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000427183	ENST00000309334		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000476807	ENST00000279873		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000476807	ENST00000309334		ChiTaRS3.1			BF930016	HDLBP	chr2	242227199	-	ARID5B	chr10	63814854	+
intron-intron	ENST00000408742	ENST00000408742		ChiTaRS3.1			F00536	MIR548N	chr2	179416978	-	MIR548N	chr2	179453312	+
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF333336	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
3UTR-3CDS	ENST00000223054	ENST00000227520		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-intron	ENST00000223054	ENST00000545580		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-3CDS	ENST00000379527	ENST00000227520		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-intron	ENST00000379527	ENST00000545580		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-3CDS	ENST00000393950	ENST00000227520		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-intron	ENST00000393950	ENST00000545580		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-3CDS	ENST00000424091	ENST00000227520		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
3UTR-intron	ENST00000424091	ENST00000545580		ChiTaRS3.1			AA777656	MOSPD3	chr7	100212916	-	CCDC86	chr11	60609989	+
intron-intron	ENST00000469172	ENST00000469172		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-3UTR	ENST00000469172	ENST00000265866		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000469172	ENST00000441000		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000469172	ENST00000354695		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
3UTR-intron	ENST00000265866	ENST00000469172		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
3UTR-3UTR	ENST00000265866	ENST00000265866		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
3UTR-intron	ENST00000265866	ENST00000441000		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
3UTR-intron	ENST00000265866	ENST00000354695		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000441000	ENST00000469172		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-3UTR	ENST00000441000	ENST00000265866		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000441000	ENST00000441000		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000441000	ENST00000354695		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000354695	ENST00000469172		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-3UTR	ENST00000354695	ENST00000265866		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000354695	ENST00000441000		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000354695	ENST00000354695		ChiTaRS3.1			AA489606	HNRNPH3	chr10	70102211	-	HNRNPH3	chr10	70102229	+
intron-intron	ENST00000378707	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378707	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000359836	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000541735	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000343523	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378677	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000357033	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000474231	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378723	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378702	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000361471	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000378680	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000288447	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000378707		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000359836		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000541735		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000343523		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000378677		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000357033		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000474231		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000378723		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000378702		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000361471		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000378680		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000288447		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000445312	ENST00000445312		ChiTaRS3.1			AW377486	DMD	chrX	32361360	-	DMD	chrX	32563429	-
intron-intron	ENST00000261772	ENST00000302538		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000544583		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000572441		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000574437		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000291107		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000543210		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000536794		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000261772	ENST00000573895		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000302538		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000544583		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000572441		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000574437		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000291107		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000543210		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000536794		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000564359	ENST00000573895		ChiTaRS3.1			BF772216	AARS	chr16	70296291	+	ABR	chr17	998996	+
intron-intron	ENST00000450943	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000354888	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393108	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393110	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393106	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393107	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000409811	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000425223	ENST00000463480		ChiTaRS3.1			AV649306	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000389413	ENST00000550404		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000389413	ENST00000261739		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000409483	ENST00000550404		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000409483	ENST00000261739		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000389416	ENST00000550404		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000389416	ENST00000261739		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000389418	ENST00000550404		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000389418	ENST00000261739		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000404321	ENST00000550404		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000404321	ENST00000261739		ChiTaRS3.1			BF813226	PTPRN2	chr7	157846864	+	ANKRD13A	chr12	110472113	-
intron-intron	ENST00000529163	ENST00000392272		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000529163	ENST00000368173		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000529163	ENST00000360089		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000529163	ENST00000359209		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000529163	ENST00000416935		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-3UTR	ENST00000529163	ENST00000368172		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000394920	ENST00000392272		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000394920	ENST00000368173		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000394920	ENST00000360089		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000394920	ENST00000359209		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000394920	ENST00000416935		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-3UTR	ENST00000394920	ENST00000368172		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000527914	ENST00000392272		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000527914	ENST00000368173		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000527914	ENST00000360089		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000527914	ENST00000359209		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000527914	ENST00000416935		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-3UTR	ENST00000527914	ENST00000368172		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000262584	ENST00000392272		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000262584	ENST00000368173		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000262584	ENST00000360089		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000262584	ENST00000359209		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000262584	ENST00000416935		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-3UTR	ENST00000262584	ENST00000368172		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000528957	ENST00000392272		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000528957	ENST00000368173		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000528957	ENST00000360089		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000528957	ENST00000359209		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-intron	ENST00000528957	ENST00000416935		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
intron-3UTR	ENST00000528957	ENST00000368172		ChiTaRS3.1			AI638676	RPL8	chr8	146015279	+	KIRREL	chr1	158069421	-
Frame-shit	ENST00000334121	ENST00000383440		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
Frame-shit	ENST00000334121	ENST00000262126		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
5CDS-intron	ENST00000334121	ENST00000540578		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
5CDS-intron	ENST00000334121	ENST00000400020		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
Frame-shit	ENST00000380918	ENST00000383440		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
Frame-shit	ENST00000380918	ENST00000262126		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
5CDS-intron	ENST00000380918	ENST00000540578		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
5CDS-intron	ENST00000380918	ENST00000400020		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
3UTR-3CDS	ENST00000284041	ENST00000383440		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
3UTR-3CDS	ENST00000284041	ENST00000262126		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
3UTR-intron	ENST00000284041	ENST00000540578		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
3UTR-intron	ENST00000284041	ENST00000400020		ChiTaRS3.1			BQ325146	SREK1	chr5	65470826	-	ANKRD12	chr18	9255717	-
intron-3CDS	ENST00000545168	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000545168	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000545168	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000545168	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000545168	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-intron	ENST00000545168	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376989	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376989	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376989	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376989	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376989	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-intron	ENST00000376989	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000238018	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000238018	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000238018	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000238018	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000238018	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-intron	ENST00000238018	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376986	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376986	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376986	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376986	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000376986	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-intron	ENST00000376986	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-3CDS	ENST00000358399	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-3CDS	ENST00000358399	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-3CDS	ENST00000358399	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-3CDS	ENST00000358399	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-3CDS	ENST00000358399	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
3UTR-intron	ENST00000358399	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000477618	ENST00000545168		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000477618	ENST00000376989		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000477618	ENST00000238018		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000477618	ENST00000376986		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000477618	ENST00000358399		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-intron	ENST00000477618	ENST00000477618		ChiTaRS3.1			BM968596	GDA	chr9	74866810	-	GDA	chr9	74860152	+
intron-3CDS	ENST00000520753	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520753	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520753	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520753	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520753	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000521613	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000521613	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000521613	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000521613	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000521613	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000519940	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000519940	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519940	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519940	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519940	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000519332	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000519332	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519332	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519332	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000519332	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520007	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520007	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520007	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520007	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520007	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000600800	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000600800	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000600800	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000600800	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000600800	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000357778	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000357778	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000357778	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000357778	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000357778	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000391898	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000391898	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000391898	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000391898	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000391898	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000359009	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000359009	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000359009	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000359009	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000359009	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000447740	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000447740	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000447740	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000447740	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000447740	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520153	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520153	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520153	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520153	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520153	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520015	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000520015	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520015	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520015	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000520015	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000522431	ENST00000342129		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000522431	ENST00000340951		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000522431	ENST00000479452		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000522431	ENST00000475006		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-intron	ENST00000522431	ENST00000465160		ChiTaRS3.1			DA917896	CARD8	chr19	48759062	+	EXD3	chr9	140246568	-
intron-3CDS	ENST00000238682	ENST00000368814		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000238682	ENST00000477437		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000238682	ENST00000489410		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-3CDS	ENST00000556285	ENST00000368814		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000556285	ENST00000477437		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000556285	ENST00000489410		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-3CDS	ENST00000556674	ENST00000368814		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000556674	ENST00000477437		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-intron	ENST00000556674	ENST00000489410		ChiTaRS3.1			AV709436	TGFB3	chr14	76434305	-	THEM4	chr1	151867559	-
intron-3UTR	ENST00000526451	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000526451	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000526451	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000526451	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000526451	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000526451	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000312234	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000312234	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000312234	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000312234	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000312234	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000312234	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000525767	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000525767	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000525767	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000525767	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000525767	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000525767	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000529964	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000529964	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000529964	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000529964	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000529964	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000529964	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000533544	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000533544	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000533544	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000533544	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000533544	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000533544	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000527249	ENST00000526451		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-3UTR	ENST00000527249	ENST00000312234		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000527249	ENST00000525767		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000527249	ENST00000529964		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000527249	ENST00000533544		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000527249	ENST00000527249		ChiTaRS3.1			BF515226	EIF1AD	chr11	65764215	+	EIF1AD	chr11	65765792	-
intron-intron	ENST00000360943	ENST00000360943		ChiTaRS3.1			CV350036	UBE2Z	chr17	46998151	-	UBE2Z	chr17	46998980	-
intron-intron	ENST00000323848	ENST00000283882		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000323848	ENST00000564286		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000447431	ENST00000283882		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000447431	ENST00000564286		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000374389	ENST00000283882		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000374389	ENST00000564286		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000479034	ENST00000283882		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000479034	ENST00000564286		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000537199	ENST00000283882		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000537199	ENST00000564286		ChiTaRS3.1			BG178896	SRRM1	chr1	24999772	+	CFDP1	chr16	75462047	-
intron-intron	ENST00000354891	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000354891	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000354891	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-3UTR	ENST00000322350	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
3UTR-intron	ENST00000322350	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000336740	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000336740	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000397202	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397202	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000397210	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000397210	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000506135	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000506135	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000354891		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000514476	ENST00000322350		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000336740		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000397202		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000397210		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000506135		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-intron	ENST00000514476	ENST00000514476		ChiTaRS3.1			AL048126	EGFLAM	chr5	38464757	-	EGFLAM	chr5	38464790	+
intron-3UTR	ENST00000526148	ENST00000396821		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000526148	ENST00000444597		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000526148	ENST00000381633		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-intron	ENST00000526148	ENST00000432525		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525681	ENST00000396821		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525681	ENST00000444597		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525681	ENST00000381633		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-intron	ENST00000525681	ENST00000432525		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000339995	ENST00000396821		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000339995	ENST00000444597		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000339995	ENST00000381633		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-intron	ENST00000339995	ENST00000432525		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000396525	ENST00000396821		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000396525	ENST00000444597		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000396525	ENST00000381633		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-intron	ENST00000396525	ENST00000432525		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525995	ENST00000396821		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525995	ENST00000444597		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-3UTR	ENST00000525995	ENST00000381633		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
intron-intron	ENST00000525995	ENST00000432525		ChiTaRS3.1			BP431076	EIF4G2	chr11	10822333	-	DDX17	chr22	38879650	+
In-frame	ENST00000297268	ENST00000297268		ChiTaRS3.1			AU120016	COL1A2	chr7	94058639	+	COL1A2	chr7	94051227	+
intron-intron	ENST00000269886	ENST00000400198		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000269886	ENST00000472226		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000269886	ENST00000375926		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000598564	ENST00000400198		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000598564	ENST00000472226		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000598564	ENST00000375926		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000417295	ENST00000400198		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000417295	ENST00000472226		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000417295	ENST00000375926		ChiTaRS3.1			BF757126	SH3GL1	chr19	4365608	+	ARGLU1	chr13	107210297	+
intron-intron	ENST00000561975	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000445793	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000361742	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000565159	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000435464	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000453268	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000565540	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
5CDS-intron	ENST00000419208	ENST00000380682		ChiTaRS3.1			BM174926	ISLR2	chr15	74427135	+	FRMPD4	chrX	12669899	+
intron-3CDS	ENST00000268483	ENST00000295897		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000268483	ENST00000415165		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000268483	ENST00000503124		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000268483	ENST00000509063		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000268483	ENST00000401494		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3UTR	ENST00000268483	ENST00000505649		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000423037	ENST00000295897		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000423037	ENST00000415165		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000423037	ENST00000503124		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000423037	ENST00000509063		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000423037	ENST00000401494		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3UTR	ENST00000423037	ENST00000505649		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000426362	ENST00000295897		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000426362	ENST00000415165		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3CDS	ENST00000426362	ENST00000503124		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000426362	ENST00000509063		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-intron	ENST00000426362	ENST00000401494		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3UTR	ENST00000426362	ENST00000505649		ChiTaRS3.1			DQ145726	TXNL4B	chr16	72094073	-	ALB	chr4	74285996	+
intron-3UTR	ENST00000421812	ENST00000421812		ChiTaRS3.1			BE891316	ZNF697	chr1	120162442	+	ZNF697	chr1	120162417	-
intron-3CDS	ENST00000396863	ENST00000396863		ChiTaRS3.1			AW246196	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000396863	ENST00000217026		ChiTaRS3.1			AW246196	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000396863		ChiTaRS3.1			AW246196	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000217026		ChiTaRS3.1			AW246196	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-intron	ENST00000264963	ENST00000264963		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000264963	ENST00000377079		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000264963	ENST00000426463		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000264963	ENST00000537039		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000264963	ENST00000534882		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000377079	ENST00000264963		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000377079	ENST00000377079		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000377079	ENST00000426463		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000377079	ENST00000537039		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000377079	ENST00000534882		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000426463	ENST00000264963		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000426463	ENST00000377079		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000426463	ENST00000426463		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000426463	ENST00000537039		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000426463	ENST00000534882		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000537039	ENST00000264963		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000537039	ENST00000377079		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000537039	ENST00000426463		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000537039	ENST00000537039		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000537039	ENST00000534882		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000534882	ENST00000264963		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000534882	ENST00000377079		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000534882	ENST00000426463		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000534882	ENST00000537039		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-intron	ENST00000534882	ENST00000534882		ChiTaRS3.1			AW176246	LMAN2L	chr2	97378543	+	LMAN2L	chr2	97378681	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911256	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911256	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911256	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911256	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000393805	ENST00000409785		ChiTaRS3.1			BI462676	ST3GAL5	chr2	86115945	-	KCMF1	chr2	85255010	+
Frame-shit	ENST00000377332	ENST00000409785		ChiTaRS3.1			BI462676	ST3GAL5	chr2	86115945	-	KCMF1	chr2	85255010	+
Frame-shit	ENST00000525834	ENST00000409785		ChiTaRS3.1			BI462676	ST3GAL5	chr2	86115945	-	KCMF1	chr2	85255010	+
5UTR-3CDS	ENST00000484728	ENST00000409785		ChiTaRS3.1			BI462676	ST3GAL5	chr2	86115945	-	KCMF1	chr2	85255010	+
intron-3CDS	ENST00000393808	ENST00000409785		ChiTaRS3.1			BI462676	ST3GAL5	chr2	86115945	-	KCMF1	chr2	85255010	+
intron-3UTR	ENST00000257821	ENST00000257821		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000257821	ENST00000323180		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000257821	ENST00000418153		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000257821	ENST00000527753		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-3UTR	ENST00000323180	ENST00000257821		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000323180	ENST00000323180		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000323180	ENST00000418153		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000323180	ENST00000527753		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-3UTR	ENST00000418153	ENST00000257821		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000418153	ENST00000323180		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000418153	ENST00000418153		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000418153	ENST00000527753		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-3UTR	ENST00000527753	ENST00000257821		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000527753	ENST00000323180		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000527753	ENST00000418153		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000527753	ENST00000527753		ChiTaRS3.1			AA442046	PHF21A	chr11	45951570	-	PHF21A	chr11	45953262	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			AW804986	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			AW993226	CD59	chr11	33743971	+	CD59	chr11	33731187	+
intron-intron	ENST00000396556	ENST00000229238		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000396556	ENST00000543164		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000396556	ENST00000543703		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-intron	ENST00000438237	ENST00000229238		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000438237	ENST00000543164		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000438237	ENST00000543703		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-intron	ENST00000467647	ENST00000229238		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000467647	ENST00000543164		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
intron-5UTR	ENST00000467647	ENST00000543703		ChiTaRS3.1			AA906776	OSBPL10	chr3	31725260	+	MRPL51	chr12	6602979	-
3UTR-3UTR	ENST00000242057	ENST00000242057		ChiTaRS3.1			BU686796	AHR	chr7	17385393	-	AHR	chr7	17385163	+
3UTR-intron	ENST00000242057	ENST00000492120		ChiTaRS3.1			BU686796	AHR	chr7	17385393	-	AHR	chr7	17385163	+
intron-3UTR	ENST00000492120	ENST00000242057		ChiTaRS3.1			BU686796	AHR	chr7	17385393	-	AHR	chr7	17385163	+
intron-intron	ENST00000492120	ENST00000492120		ChiTaRS3.1			BU686796	AHR	chr7	17385393	-	AHR	chr7	17385163	+
intron-3UTR	ENST00000259199	ENST00000344063		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000431533		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000428193		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558815		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000259199	ENST00000560583		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000560055		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000559463		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558131		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558752		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000458349		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000344063		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000431533		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000428193		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558815		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000560583		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000560055		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000559463		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558131		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558752		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000458349		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000344063		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000431533		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000428193		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558815		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000560583		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000560055		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000559463		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558131		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558752		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000458349		ChiTaRS3.1			BQ646046	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000578312	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000578312	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000262394	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000262394	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000579733	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000579733	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000583193	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000583193	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000581185	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000581185	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000427287	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000427287	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000348811	ENST00000377966		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000348811	ENST00000479053		ChiTaRS3.1			AI472026	WSB1	chr17	25622072	-	RECK	chr9	36083764	-
intron-intron	ENST00000606784	ENST00000330430		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606784	ENST00000371374		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606784	ENST00000306764		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606784	ENST00000405162		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-intron	ENST00000369663	ENST00000330430		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000369663	ENST00000371374		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000369663	ENST00000306764		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000369663	ENST00000405162		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-intron	ENST00000606521	ENST00000330430		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606521	ENST00000371374		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606521	ENST00000306764		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-5UTR	ENST00000606521	ENST00000405162		ChiTaRS3.1			DB270826	TBX18	chr6	85472205	+	RCAN2	chr6	46424717	-
intron-3UTR	ENST00000358252	ENST00000310300		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-intron	ENST00000358252	ENST00000497245		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-3UTR	ENST00000532437	ENST00000310300		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-intron	ENST00000532437	ENST00000497245		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-3UTR	ENST00000530920	ENST00000310300		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-intron	ENST00000530920	ENST00000497245		ChiTaRS3.1			AV704306	TNKS1BP1	chr11	57075094	-	LRCH4	chr7	100172403	-
intron-3CDS	ENST00000217074	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000217074	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000255136	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000255136	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000537323	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000537323	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000217073	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000217073	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000490798	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000490798	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000372824	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000372824	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000372819	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000372819	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-3CDS	ENST00000217075	ENST00000266718		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000217075	ENST00000548071		ChiTaRS3.1			AW590716	PABPC1L	chr20	43571067	+	LUM	chr12	91502645	+
intron-intron	ENST00000540687	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000540687	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000540687	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000566220	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000566220	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000566220	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
3UTR-intron	ENST00000519077	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
3UTR-intron	ENST00000519077	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
3UTR-intron	ENST00000519077	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000521091	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000521091	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000521091	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569149	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569149	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569149	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000563812	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000563812	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000563812	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602393	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602393	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602393	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602971	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602971	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000602971	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569384	ENST00000468758		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569384	ENST00000409645		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000569384	ENST00000281923		ChiTaRS3.1			AF088006	TUG1	chr22	31372180	+	MGAT5	chr2	135156105	-
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-intron	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331566	N4BP2L2	chr13	33101671	+	N4BP2L2	chr13	33091994	+
intron-3UTR	ENST00000371026	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000371026	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371026	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371026	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371026	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371026	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000431318	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000431318	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000431318	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000431318	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000431318	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000431318	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000371023	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000371023	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371023	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371023	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371023	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371023	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000371022	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000371022	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371022	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371022	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371022	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000371022	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000488333	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000488333	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000488333	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000488333	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000488333	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000488333	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000493572	ENST00000371026		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-3UTR	ENST00000493572	ENST00000431318		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000493572	ENST00000371023		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000493572	ENST00000371022		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000493572	ENST00000488333		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000493572	ENST00000493572		ChiTaRS3.1			CB242186	WDR78	chr1	67278657	+	WDR78	chr1	67278868	-
intron-intron	ENST00000580974	ENST00000580974		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000580974	ENST00000299954		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000580974	ENST00000335257		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000580974	ENST00000581322		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000299954	ENST00000580974		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000299954	ENST00000299954		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000299954	ENST00000335257		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000299954	ENST00000581322		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000335257	ENST00000580974		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000335257	ENST00000299954		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000335257	ENST00000335257		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000335257	ENST00000581322		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000581322	ENST00000580974		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000581322	ENST00000299954		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000581322	ENST00000335257		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
intron-intron	ENST00000581322	ENST00000581322		ChiTaRS3.1			BE159536	PITPNC1	chr17	65387268	+	PITPNC1	chr17	65387333	-
5CDS-3UTR	ENST00000355630	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000355630	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-intron	ENST00000355630	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000396617	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000396617	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-intron	ENST00000396617	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000402042	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000402042	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-intron	ENST00000402042	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
intron-3UTR	ENST00000466278	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
intron-3UTR	ENST00000466278	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
intron-intron	ENST00000466278	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000407029	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000407029	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-intron	ENST00000407029	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000402630	ENST00000369784		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-3UTR	ENST00000402630	ENST00000487146		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
5CDS-intron	ENST00000402630	ENST00000602849		ChiTaRS3.1			AF364036	MKL1	chr22	40859225	-	RBM15	chr1	110888930	+
3UTR-3UTR	ENST00000519728	ENST00000519728		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
3UTR-3UTR	ENST00000519728	ENST00000520220		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
3UTR-intron	ENST00000519728	ENST00000420292		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
3UTR-3UTR	ENST00000520220	ENST00000519728		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
3UTR-3UTR	ENST00000520220	ENST00000520220		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
3UTR-intron	ENST00000520220	ENST00000420292		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
intron-3UTR	ENST00000420292	ENST00000519728		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
intron-3UTR	ENST00000420292	ENST00000520220		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
intron-intron	ENST00000420292	ENST00000420292		ChiTaRS3.1			BU674256	LYN	chr8	56922982	-	LYN	chr8	56922792	+
5CDS-intron	ENST00000313269	ENST00000447054		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000313269	ENST00000265022		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000313269	ENST00000344484		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000313269	ENST00000382164		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000313269	ENST00000544847		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000395068	ENST00000447054		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000395068	ENST00000265022		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000395068	ENST00000344484		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000395068	ENST00000382164		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
5CDS-intron	ENST00000395068	ENST00000544847		ChiTaRS3.1			BF732626	GRINA	chr8	145065536	+	DGKG	chr3	185910768	+
In-frame	ENST00000371692	ENST00000371692		ChiTaRS3.1			AA305656	FAM69B	chr9	139617734	-	FAM69B	chr9	139617931	+
In-frame	ENST00000371692	ENST00000371691		ChiTaRS3.1			AA305656	FAM69B	chr9	139617734	-	FAM69B	chr9	139617931	+
In-frame	ENST00000371691	ENST00000371692		ChiTaRS3.1			AA305656	FAM69B	chr9	139617734	-	FAM69B	chr9	139617931	+
In-frame	ENST00000371691	ENST00000371691		ChiTaRS3.1			AA305656	FAM69B	chr9	139617734	-	FAM69B	chr9	139617931	+
In-frame	ENST00000391984	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000391984	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000391984	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000391984	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000391984	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000391984	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-3CDS	ENST00000391982	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000391982	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000391982	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000391982	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000391982	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000391982	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
In-frame	ENST00000404753	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000404753	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000404753	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000404753	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000404753	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000404753	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-3CDS	ENST00000270364	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000270364	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000270364	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000270364	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000270364	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000270364	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
Frame-shit	ENST00000352879	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000352879	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000352879	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000352879	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000352879	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000352879	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
Frame-shit	ENST00000354082	ENST00000391984		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000354082	ENST00000391982		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000354082	ENST00000404753		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000354082	ENST00000270364		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000354082	ENST00000352879		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
5CDS-intron	ENST00000354082	ENST00000354082		ChiTaRS3.1			CX870856	CAPN10	chr2	241538076	-	CAPN10	chr2	241535799	+
intron-intron	ENST00000550418	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000550418	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000550418	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000550418	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000550418	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000553186	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000553186	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000553186	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000553186	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000553186	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547372	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547372	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547372	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000547372	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547372	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000422070	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000422070	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000422070	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000422070	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000422070	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000535565	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000535565	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000535565	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000535565	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000535565	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547427	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547427	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547427	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000547427	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547427	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000552089	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000552089	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000552089	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000552089	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000552089	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547338	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547338	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547338	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000547338	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000547338	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000436368	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000436368	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000436368	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000436368	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000436368	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000311745	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000311745	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000311745	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000311745	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000311745	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000355637	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000355637	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000355637	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000355637	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000355637	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000340209	ENST00000438666		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000340209	ENST00000451493		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000340209	ENST00000355182		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-5UTR	ENST00000340209	ENST00000494062		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
intron-intron	ENST00000340209	ENST00000495510		ChiTaRS3.1			DA388806	RBFOX1	chr16	6708213	+	SPG20	chr13	36920497	-
5CDS-3UTR	ENST00000377795	ENST00000327367		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
5CDS-intron	ENST00000377795	ENST00000559092		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
5CDS-intron	ENST00000377795	ENST00000540846		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
5CDS-intron	ENST00000377795	ENST00000439724		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
5CDS-intron	ENST00000377795	ENST00000537194		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-3UTR	ENST00000353334	ENST00000327367		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000353334	ENST00000559092		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000353334	ENST00000540846		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000353334	ENST00000439724		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000353334	ENST00000537194		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-3UTR	ENST00000524315	ENST00000327367		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000524315	ENST00000559092		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000524315	ENST00000540846		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000524315	ENST00000439724		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000524315	ENST00000537194		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-3UTR	ENST00000009530	ENST00000327367		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000009530	ENST00000559092		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000009530	ENST00000540846		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000009530	ENST00000439724		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
intron-intron	ENST00000009530	ENST00000537194		ChiTaRS3.1			BI003846	CD74	chr5	149781198	-	SMAD3	chr15	67487371	-
3UTR-intron	ENST00000326427	ENST00000323060		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000326427	ENST00000263275		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000326427	ENST00000544371		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000335005	ENST00000323060		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000335005	ENST00000263275		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000335005	ENST00000544371		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000326407	ENST00000323060		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000326407	ENST00000263275		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
3UTR-intron	ENST00000326407	ENST00000544371		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000409704	ENST00000323060		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000409704	ENST00000263275		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000409704	ENST00000544371		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000492029	ENST00000323060		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000492029	ENST00000263275		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000492029	ENST00000544371		ChiTaRS3.1			AA523886	ITM2C	chr2	231743878	-	OPA3	chr19	46086336	+
intron-intron	ENST00000366956	ENST00000366956		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000366956	ENST00000543945		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000366956	ENST00000491277		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000543945	ENST00000366956		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000543945	ENST00000543945		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000543945	ENST00000491277		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000491277	ENST00000366956		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000491277	ENST00000543945		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
intron-intron	ENST00000491277	ENST00000491277		ChiTaRS3.1			BF379386	PTPN14	chr1	214540452	-	PTPN14	chr1	214540357	+
5CDS-intron	ENST00000402696	ENST00000466411		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000435050		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000431918		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000402696	ENST00000340958		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000466411		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000435050		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000431918		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
5CDS-intron	ENST00000264998	ENST00000340958		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000466411		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000435050		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000431918		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
intron-intron	ENST00000475382	ENST00000340958		ChiTaRS3.1			AF075336	TF	chr3	133495988	-	CLDN4	chr7	73247126	-
3UTR-3CDS	ENST00000409785	ENST00000409785		ChiTaRS3.1			AW803556	KCMF1	chr2	85280559	-	KCMF1	chr2	85273353	+
intron-intron	ENST00000393245	ENST00000421182		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000357867		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000323926		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000336916		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000354785		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000357009		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000346544		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000345488		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000359671		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000446046		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000443816		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000432072		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000356005		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000490833		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000393245	ENST00000426059		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000421182		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000357867		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000323926		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000336916		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000354785		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000357009		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000346544		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000345488		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000359671		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000446046		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000443816		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000432072		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000356005		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000490833		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000265388	ENST00000426059		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000421182		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000357867		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000323926		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000336916		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000354785		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000357009		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000346544		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000345488		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000359671		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000446046		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000443816		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000432072		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000356005		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000490833		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000482320	ENST00000426059		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000421182		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000357867		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000323926		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000336916		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000354785		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000357009		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000346544		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000345488		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000359671		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000446046		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000443816		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000432072		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000356005		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000490833		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471234	ENST00000426059		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000421182		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000357867		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000323926		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000336916		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000354785		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000357009		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000346544		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000345488		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000359671		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000446046		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000443816		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000432072		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000356005		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000490833		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000471166	ENST00000426059		ChiTaRS3.1			BF773006	TNPO3	chr7	128658520	+	FN1	chr2	216241456	-
intron-intron	ENST00000531610	ENST00000546177		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000531610	ENST00000332349		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000531610	ENST00000458427		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000289957	ENST00000546177		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000289957	ENST00000332349		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000289957	ENST00000458427		ChiTaRS3.1			BE464466	CHRNB3	chr8	42559297	+	JRKL	chr11	96183356	+
intron-intron	ENST00000273038	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000273038	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000273038	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000273038	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000430365	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000430365	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000430365	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000430365	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000404339	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000404339	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000404339	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000404339	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000480288	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000480288	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000480288	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000480288	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000413604	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000413604	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000413604	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000413604	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000451674	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000451674	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000451674	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000451674	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000424529	ENST00000446450		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000424529	ENST00000354956		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-3UTR	ENST00000424529	ENST00000354449		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
intron-intron	ENST00000424529	ENST00000469654		ChiTaRS3.1			BF084816	VGLL4	chr3	11606345	-	ATG7	chr3	11597842	+
3UTR-3UTR	ENST00000355294	ENST00000355294		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000355294	ENST00000367117		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000355294	ENST00000304534		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000355294	ENST00000491368		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000367117	ENST00000355294		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000367117	ENST00000367117		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000367117	ENST00000304534		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000367117	ENST00000491368		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000304534	ENST00000355294		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000304534	ENST00000367117		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000304534	ENST00000304534		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000304534	ENST00000491368		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000491368	ENST00000355294		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000491368	ENST00000367117		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000491368	ENST00000304534		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-3UTR	ENST00000491368	ENST00000491368		ChiTaRS3.1			BE159686	RASSF5	chr1	206760374	+	RASSF5	chr1	206760755	-
3UTR-intron	ENST00000553331	ENST00000380516		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
3UTR-intron	ENST00000553331	ENST00000536328		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
3UTR-intron	ENST00000553331	ENST00000557950		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
5CDS-intron	ENST00000216832	ENST00000380516		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
5CDS-intron	ENST00000216832	ENST00000536328		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
5CDS-intron	ENST00000216832	ENST00000557950		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
intron-intron	ENST00000556530	ENST00000380516		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
intron-intron	ENST00000556530	ENST00000536328		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
intron-intron	ENST00000556530	ENST00000557950		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
3UTR-intron	ENST00000557680	ENST00000380516		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
3UTR-intron	ENST00000557680	ENST00000536328		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
3UTR-intron	ENST00000557680	ENST00000557950		ChiTaRS3.1			BE933906	PNN	chr14	39648338	-	SLTM	chr15	59182468	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			AW440166	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-5UTR	ENST00000206423	ENST00000206423		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000206423	ENST00000439685		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000206423	ENST00000475181		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-5UTR	ENST00000439685	ENST00000206423		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000439685	ENST00000439685		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000439685	ENST00000475181		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-5UTR	ENST00000475181	ENST00000206423		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000475181	ENST00000439685		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
intron-intron	ENST00000475181	ENST00000475181		ChiTaRS3.1			BU634396	CCDC80	chr3	112359938	+	CCDC80	chr3	112359336	+
Frame-shit	ENST00000370951	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370951	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370951	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370951	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370951	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370951	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000405432	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000405432	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000405432	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000405432	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000405432	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000405432	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370950	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370950	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370950	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370950	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370950	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370950	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000454435	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000454435	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000454435	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000454435	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000454435	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000454435	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000436161	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000436161	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3CDS	ENST00000436161	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000436161	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000436161	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-3UTR	ENST00000436161	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3CDS	ENST00000484162	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3CDS	ENST00000484162	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3CDS	ENST00000484162	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3UTR	ENST00000484162	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3UTR	ENST00000484162	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
3UTR-3UTR	ENST00000484162	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370949	ENST00000370951		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370949	ENST00000405432		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
Frame-shit	ENST00000370949	ENST00000370950		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370949	ENST00000436161		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370949	ENST00000484162		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
5CDS-3UTR	ENST00000370949	ENST00000370949		ChiTaRS3.1			BU689906	SRSF11	chr1	70705152	-	SRSF11	chr1	70700409	+
intron-intron	ENST00000438447	ENST00000438447		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000438447	ENST00000282493		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000438447	ENST00000513490		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000282493	ENST00000438447		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000282493	ENST00000282493		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000282493	ENST00000513490		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000513490	ENST00000438447		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000513490	ENST00000282493		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-intron	ENST00000513490	ENST00000513490		ChiTaRS3.1			AW885636	PDZD2	chr5	31994699	+	PDZD2	chr5	31993735	+
intron-3UTR	ENST00000334444	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000334444	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000334444	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000334444	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000334444	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000334444	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000334444	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000265586	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000265586	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000265586	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000265586	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000265586	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000265586	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000265586	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000492216	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000492216	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000492216	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000492216	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000492216	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000492216	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000492216	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000427120	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000427120	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000427120	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000427120	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000427120	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000427120	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000427120	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000392579	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000392579	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000392579	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000392579	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000392579	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000392579	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000392579	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000382494	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000382494	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000382494	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000382494	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000382494	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000382494	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000382494	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000446941	ENST00000429989		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000446941	ENST00000481124		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000446941	ENST00000372164		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000446941	ENST00000372158		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000446941	ENST00000341863		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-intron	ENST00000446941	ENST00000372156		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
intron-3UTR	ENST00000446941	ENST00000265450		ChiTaRS3.1			AW062626	ABCC5	chr3	183638354	-	TSPAN14	chr10	82278551	+
3UTR-3UTR	ENST00000166139	ENST00000166139		ChiTaRS3.1			BF848346	FSTL3	chr19	681969	+	FSTL3	chr19	682060	-
3UTR-3UTR	ENST00000166139	ENST00000592947		ChiTaRS3.1			BF848346	FSTL3	chr19	681969	+	FSTL3	chr19	682060	-
3UTR-3UTR	ENST00000592947	ENST00000166139		ChiTaRS3.1			BF848346	FSTL3	chr19	681969	+	FSTL3	chr19	682060	-
3UTR-3UTR	ENST00000592947	ENST00000592947		ChiTaRS3.1			BF848346	FSTL3	chr19	681969	+	FSTL3	chr19	682060	-
intron-3UTR	ENST00000336023	ENST00000361272		ChiTaRS3.1			DB368876	TUBA1B	chr12	49521699	+	CNOT7	chr8	17087282	+
intron-intron	ENST00000336023	ENST00000523917		ChiTaRS3.1			DB368876	TUBA1B	chr12	49521699	+	CNOT7	chr8	17087282	+
intron-intron	ENST00000336023	ENST00000518885		ChiTaRS3.1			DB368876	TUBA1B	chr12	49521699	+	CNOT7	chr8	17087282	+
3UTR-3UTR	ENST00000359511	ENST00000220751		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
3UTR-intron	ENST00000359511	ENST00000540020		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
intron-3UTR	ENST00000423538	ENST00000220751		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
intron-intron	ENST00000423538	ENST00000540020		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
3UTR-3UTR	ENST00000469537	ENST00000220751		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
3UTR-intron	ENST00000469537	ENST00000540020		ChiTaRS3.1			BM929466	SLC25A44	chr1	156182470	-	RIPK2	chr8	90803215	+
intron-3UTR	ENST00000408978	ENST00000355621		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-intron	ENST00000408978	ENST00000473814		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-3UTR	ENST00000409044	ENST00000355621		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-intron	ENST00000409044	ENST00000473814		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-3UTR	ENST00000334231	ENST00000355621		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-intron	ENST00000334231	ENST00000473814		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-3UTR	ENST00000602629	ENST00000355621		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-intron	ENST00000602629	ENST00000473814		ChiTaRS3.1			AI972676	MYO3B	chr2	171115489	+	UBE2H	chr7	129473838	+
intron-3CDS	ENST00000292614	ENST00000373913		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000292614	ENST00000401952		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000292614	ENST00000373907		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000292614	ENST00000339266		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3UTR	ENST00000292614	ENST00000475894		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3UTR	ENST00000292614	ENST00000340491		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000393794	ENST00000373913		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000393794	ENST00000401952		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000393794	ENST00000373907		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3CDS	ENST00000393794	ENST00000339266		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3UTR	ENST00000393794	ENST00000475894		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3UTR	ENST00000393794	ENST00000340491		ChiTaRS3.1			AI202736	POLR2J	chr7	102113978	+	DLGAP4	chr20	35128721	-
intron-3UTR	ENST00000395465	ENST00000229239		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000395465	ENST00000396856		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000395465	ENST00000396861		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000395465	ENST00000396859		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-intron	ENST00000395465	ENST00000396858		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000448060	ENST00000229239		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000448060	ENST00000396856		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000448060	ENST00000396861		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000448060	ENST00000396859		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-intron	ENST00000448060	ENST00000396858		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000540479	ENST00000229239		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000540479	ENST00000396856		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000540479	ENST00000396861		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000540479	ENST00000396859		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-intron	ENST00000540479	ENST00000396858		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000467889	ENST00000229239		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000467889	ENST00000396856		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000467889	ENST00000396861		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-3UTR	ENST00000467889	ENST00000396859		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
intron-intron	ENST00000467889	ENST00000396858		ChiTaRS3.1			BQ420306	CALML4	chr15	68490023	+	GAPDH	chr12	6647483	+
3UTR-intron	ENST00000360639	ENST00000449086		ChiTaRS3.1			AF495726	C15orf39	chr15	75503862	+	LINC00954	chr2	20069636	+
3UTR-intron	ENST00000394987	ENST00000449086		ChiTaRS3.1			AF495726	C15orf39	chr15	75503862	+	LINC00954	chr2	20069636	+
3UTR-intron	ENST00000567617	ENST00000449086		ChiTaRS3.1			AF495726	C15orf39	chr15	75503862	+	LINC00954	chr2	20069636	+
intron-intron	ENST00000346173	ENST00000380909		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000346173	ENST00000303434		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000346173	ENST00000395827		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000346173	ENST00000395829		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000406846	ENST00000380909		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000406846	ENST00000303434		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000406846	ENST00000395827		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000406846	ENST00000395829		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000304421	ENST00000380909		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000304421	ENST00000303434		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000304421	ENST00000395827		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000304421	ENST00000395829		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000541117	ENST00000380909		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000541117	ENST00000303434		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000541117	ENST00000395827		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000541117	ENST00000395829		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000469138	ENST00000380909		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000469138	ENST00000303434		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000469138	ENST00000395827		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-intron	ENST00000469138	ENST00000395829		ChiTaRS3.1			CA313756	FSHR	chr2	49216916	+	TRABD	chr22	50629936	+
intron-3CDS	ENST00000250894	ENST00000303714		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000250894	ENST00000409829		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000250894	ENST00000409349		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000303714		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000409829		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000356010	ENST00000409349		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000303714		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000409829		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000568271	ENST00000409349		ChiTaRS3.1			BE842906	MAPK8IP3	chr16	1817447	-	ANTXR1	chr2	69350190	+
intron-3CDS	ENST00000532636	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000532636	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000532636		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000533540		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000453788		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534624		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000227378		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534319		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526110		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526862		ChiTaRS3.1			BF082086	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000360162	ENST00000399161		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000360162	ENST00000428368		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000360162	ENST00000407844		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000360162	ENST00000471668		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000356080	ENST00000399161		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000356080	ENST00000428368		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000356080	ENST00000407844		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000356080	ENST00000471668		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000277900	ENST00000399161		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000277900	ENST00000428368		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000277900	ENST00000407844		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000277900	ENST00000471668		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000497125	ENST00000399161		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000497125	ENST00000428368		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000497125	ENST00000407844		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000497125	ENST00000471668		ChiTaRS3.1			BF960116	ADD3	chr10	111881219	-	MYT1L	chr2	2158978	+
intron-intron	ENST00000610020	ENST00000425687		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000263552		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000336425		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000436047		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000416849		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000414508		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000448866		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000455353		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000458722		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000411653		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000462275		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000610020	ENST00000539806		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000425687		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000263552		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000336425		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000436047		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000416849		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000414508		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000448866		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000455353		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000458722		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000411653		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000462275		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-intron	ENST00000484158	ENST00000539806		ChiTaRS3.1			BF893936	RPAP2	chr1	92813801	-	TBXAS1	chr7	139548448	+
intron-3CDS	ENST00000372600	ENST00000286091		ChiTaRS3.1			BF807186	LRRC8A	chr9	131655570	+	PDIA4	chr7	148702439	+
intron-3CDS	ENST00000372599	ENST00000286091		ChiTaRS3.1			BF807186	LRRC8A	chr9	131655570	+	PDIA4	chr7	148702439	+
intron-3CDS	ENST00000259324	ENST00000286091		ChiTaRS3.1			BF807186	LRRC8A	chr9	131655570	+	PDIA4	chr7	148702439	+
intron-3CDS	ENST00000492784	ENST00000286091		ChiTaRS3.1			BF807186	LRRC8A	chr9	131655570	+	PDIA4	chr7	148702439	+
3UTR-3UTR	ENST00000519374	ENST00000519374		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000519374	ENST00000519911		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000519374	ENST00000265093		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-intron	ENST00000519374	ENST00000517669		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000519911	ENST00000519374		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000519911	ENST00000519911		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000519911	ENST00000265093		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-intron	ENST00000519911	ENST00000517669		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000265093	ENST00000519374		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000265093	ENST00000519911		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000265093	ENST00000265093		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-intron	ENST00000265093	ENST00000517669		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
intron-3UTR	ENST00000517669	ENST00000519374		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
intron-3UTR	ENST00000517669	ENST00000519911		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
intron-3UTR	ENST00000517669	ENST00000265093		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
intron-intron	ENST00000517669	ENST00000517669		ChiTaRS3.1			W92666	ATP6V0E1	chr5	172461428	-	ATP6V0E1	chr5	172461552	+
3UTR-3UTR	ENST00000372067	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372067	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372067	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372067	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000417285	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000417285	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000417285	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000417285	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000324450	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000324450	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000324450	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000324450	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000413642	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000413642	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000413642	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000413642	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000372055	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000372055	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000372055	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000372055	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000482630	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000482630	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000482630	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000482630	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000425836	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000425836	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000425836	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000425836	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372064	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372064	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372064	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372064	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372077	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372077	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-3UTR	ENST00000372077	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
3UTR-intron	ENST00000372077	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000520948	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000520948	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000520948	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000520948	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523873	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523873	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523873	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523873	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523950	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523950	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523950	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523950	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518689	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518689	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518689	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518689	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523125	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523125	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000523125	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000523125	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000457104	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000457104	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000457104	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000457104	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518824	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518824	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000518824	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000518824	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000230480	ENST00000372067		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000417285		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000324450		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000413642		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000372055		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000482630		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000425836		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000230480	ENST00000372064		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-3UTR	ENST00000230480	ENST00000372077		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000520948		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000523873		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000523950		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000518689		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000523125		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000457104		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000518824		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
intron-intron	ENST00000230480	ENST00000230480		ChiTaRS3.1			BF340246	VEGFA	chr6	43753387	-	VEGFA	chr6	43753432	+
5CDS-intron	ENST00000230658	ENST00000536985		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000379789		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000540253		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000317350		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000379785		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000379782		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000360521		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000230658	ENST00000379775		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000536985		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000379789		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000540253		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000317350		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000379785		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000379782		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000360521		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
5CDS-intron	ENST00000511384	ENST00000379775		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000536985		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000379789		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000540253		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000317350		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000379785		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000379782		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000360521		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000505475	ENST00000379775		ChiTaRS3.1			BI047516	ISL1	chr5	50689409	+	PFKFB3	chr10	6253156	-
intron-intron	ENST00000409900	ENST00000405201		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409900	ENST00000404621		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409900	ENST00000404121		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409900	ENST00000356219		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409900	ENST00000397355		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409900	ENST00000429285		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000405201		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000404621		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000404121		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000356219		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000397355		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000488080	ENST00000429285		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000405201		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000404621		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000404121		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000356219		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000397355		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409156	ENST00000429285		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000405201		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000404621		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000404121		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000356219		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000397355		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000295497	ENST00000429285		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000405201		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000404621		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000404121		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000356219		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000397355		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000409597	ENST00000429285		ChiTaRS3.1			BF924756	CHN1	chr2	175673268	-	NCOR2	chr12	124956726	+
intron-intron	ENST00000427662	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000427662	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000427662	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000427662	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000427662	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000427662	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000369774	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000355946	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000315994	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000540321	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000427662		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000369774		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000355946		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000315994		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000540321		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000538130	ENST00000538130		ChiTaRS3.1			BE142046	SH3PXD2A	chr10	105481582	+	SH3PXD2A	chr10	105477519	-
intron-intron	ENST00000472876	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000472876	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000472876	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000472876	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000472876	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395527	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395527	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395527	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395527	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395527	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395529	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395529	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395529	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395529	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395529	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000261503	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000261503	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000261503	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000261503	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000261503	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395530	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395530	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395530	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395530	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395530	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000536879	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000536879	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000536879	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000536879	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000536879	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395522	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395522	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395522	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395522	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395522	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395525	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395525	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395525	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395525	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000395525	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000584527	ENST00000066544		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000584527	ENST00000531206		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000584527	ENST00000446365		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000584527	ENST00000527547		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
intron-intron	ENST00000584527	ENST00000528748		ChiTaRS3.1			BF904626	SPECC1	chr17	20216167	+	CDC27	chr17	45251827	-
3UTR-3UTR	ENST00000308330	ENST00000373547		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
3UTR-3UTR	ENST00000308330	ENST00000415905		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
3UTR-3UTR	ENST00000308330	ENST00000451402		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
3UTR-intron	ENST00000308330	ENST00000373546		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
intron-3UTR	ENST00000541171	ENST00000373547		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
intron-3UTR	ENST00000541171	ENST00000415905		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
intron-3UTR	ENST00000541171	ENST00000451402		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
intron-intron	ENST00000541171	ENST00000373546		ChiTaRS3.1			BE173646	LEMD3	chr12	65640157	+	PPP6C	chr9	127909188	-
intron-3CDS	ENST00000261574	ENST00000261574		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000261574	ENST00000490680		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000261574	ENST00000539640		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000261574	ENST00000493492		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000261574		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000490680		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-3CDS	ENST00000490680	ENST00000539640		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
5UTR-intron	ENST00000490680	ENST00000493492		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000261574		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000490680		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000539640	ENST00000539640		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000539640	ENST00000493492		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000261574		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000490680		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3CDS	ENST00000493492	ENST00000539640		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-intron	ENST00000493492	ENST00000493492		ChiTaRS3.1			BE856566	IPO5	chr13	98628910	-	IPO5	chr13	98666336	-
intron-3UTR	ENST00000396981	ENST00000396981		ChiTaRS3.1			AA747626	UBE2G1	chr17	4172900	-	UBE2G1	chr17	4172933	+
intron-intron	ENST00000396981	ENST00000572484		ChiTaRS3.1			AA747626	UBE2G1	chr17	4172900	-	UBE2G1	chr17	4172933	+
intron-3UTR	ENST00000572484	ENST00000396981		ChiTaRS3.1			AA747626	UBE2G1	chr17	4172900	-	UBE2G1	chr17	4172933	+
intron-intron	ENST00000572484	ENST00000572484		ChiTaRS3.1			AA747626	UBE2G1	chr17	4172900	-	UBE2G1	chr17	4172933	+
intron-intron	ENST00000493485	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000493485	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000493485	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000494186	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000494186	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000494186	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000331410	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000331410	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000331410	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000483089	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000483089	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000483089	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000448667	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000448667	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000448667	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000379724	ENST00000335953		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000379724	ENST00000392996		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-intron	ENST00000379724	ENST00000535379		ChiTaRS3.1			BG740456	ZNF789	chr7	99080578	+	ZBTB16	chr11	113937755	+
intron-3CDS	ENST00000571133	ENST00000571133		ChiTaRS3.1			CB410586	RSL1D1	chr16	11940395	+	RSL1D1	chr16	11933681	+
intron-3CDS	ENST00000571133	ENST00000542106		ChiTaRS3.1			CB410586	RSL1D1	chr16	11940395	+	RSL1D1	chr16	11933681	+
intron-3CDS	ENST00000542106	ENST00000571133		ChiTaRS3.1			CB410586	RSL1D1	chr16	11940395	+	RSL1D1	chr16	11933681	+
intron-3CDS	ENST00000542106	ENST00000542106		ChiTaRS3.1			CB410586	RSL1D1	chr16	11940395	+	RSL1D1	chr16	11933681	+
intron-intron	ENST00000317147	ENST00000317147		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000317147	ENST00000569240		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000317147	ENST00000441024		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000317147	ENST00000569732		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000317147	ENST00000245138		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569240	ENST00000317147		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569240	ENST00000569240		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569240	ENST00000441024		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569240	ENST00000569732		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569240	ENST00000245138		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000441024	ENST00000317147		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000441024	ENST00000569240		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000441024	ENST00000441024		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000441024	ENST00000569732		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000441024	ENST00000245138		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569732	ENST00000317147		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569732	ENST00000569240		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569732	ENST00000441024		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569732	ENST00000569732		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000569732	ENST00000245138		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000245138	ENST00000317147		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000245138	ENST00000569240		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000245138	ENST00000441024		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000245138	ENST00000569732		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000245138	ENST00000245138		ChiTaRS3.1			AW835606	CNOT1	chr16	58651042	+	CNOT1	chr16	58650528	-
intron-intron	ENST00000297423	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000297423	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000297423	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000297423	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000297423	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000297423	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518074	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000541342	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000521214	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000517693	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000297423		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000518074		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000541342		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000521214		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000517693		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-intron	ENST00000518060	ENST00000518060		ChiTaRS3.1			CA310756	SPIDR	chr8	48649556	+	SPIDR	chr8	48649720	-
intron-3CDS	ENST00000356206	ENST00000356206		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000356206	ENST00000521321		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000356206	ENST00000358689		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000356206	ENST00000417069		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-3CDS	ENST00000521321	ENST00000356206		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000521321	ENST00000521321		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000521321	ENST00000358689		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000521321	ENST00000417069		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-3CDS	ENST00000358689	ENST00000356206		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000358689	ENST00000521321		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000358689	ENST00000358689		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000358689	ENST00000417069		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-3CDS	ENST00000417069	ENST00000356206		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000417069	ENST00000521321		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000417069	ENST00000358689		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000417069	ENST00000417069		ChiTaRS3.1			BF872346	ENTPD4	chr8	23297311	-	ENTPD4	chr8	23299526	+
intron-intron	ENST00000330430	ENST00000396153		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000371778		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000545823		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000472808		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000396153		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000371778		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000545823		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000472808		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000396153		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000371778		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000545823		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000472808		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000396153		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000371778		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000545823		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000472808		ChiTaRS3.1			CV391946	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-3CDS	ENST00000439817	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000439817	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000439817	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000439817	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000439817	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000439817	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000361464	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000361464	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000361464	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000361464	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000361464	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000361464	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000482611	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000482611	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000482611	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000482611	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000482611	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000482611	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000357797	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000357797	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000357797	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000357797	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000357797	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000357797	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000370094	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000370094	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000370094	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000370094	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000370094	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000370094	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000419011	ENST00000439817		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3CDS	ENST00000419011	ENST00000361464		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000419011	ENST00000482611		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000419011	ENST00000357797		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-intron	ENST00000419011	ENST00000370094		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
intron-3UTR	ENST00000419011	ENST00000419011		ChiTaRS3.1			BE840906	MGEA5	chr10	103573328	+	MGEA5	chr10	103567574	-
3UTR-3CDS	ENST00000361136	ENST00000361136		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
3UTR-3CDS	ENST00000361136	ENST00000361875		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
3UTR-intron	ENST00000361136	ENST00000492828		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
3UTR-3CDS	ENST00000361875	ENST00000361136		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
3UTR-3CDS	ENST00000361875	ENST00000361875		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
3UTR-intron	ENST00000361875	ENST00000492828		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
intron-3CDS	ENST00000492828	ENST00000361136		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
intron-3CDS	ENST00000492828	ENST00000361875		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
intron-intron	ENST00000492828	ENST00000492828		ChiTaRS3.1			BP250566	TSC22D2	chr3	150176970	+	TSC22D2	chr3	150176337	-
intron-3CDS	ENST00000337959	ENST00000398599		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000337959	ENST00000221992		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000337959	ENST00000405816		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000263246	ENST00000398599		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000263246	ENST00000221992		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000263246	ENST00000405816		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000407585	ENST00000398599		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000407585	ENST00000221992		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000407585	ENST00000405816		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000403744	ENST00000398599		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000403744	ENST00000221992		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000403744	ENST00000405816		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000402229	ENST00000398599		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000402229	ENST00000221992		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
intron-3CDS	ENST00000402229	ENST00000405816		ChiTaRS3.1			CA432846	PACSIN2	chr22	43267006	+	CEACAM5	chr19	42221405	-
5CDS-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
5CDS-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
5CDS-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
5CDS-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AF373585	KMT2A	chr11	118355676	+	MLLT1	chr19	6244694	-
intron-intron	ENST00000369250	ENST00000369250		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369250	ENST00000369248		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369250	ENST00000369246		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369248	ENST00000369250		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369248	ENST00000369248		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369248	ENST00000369246		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369246	ENST00000369250		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369246	ENST00000369248		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
intron-intron	ENST00000369246	ENST00000369246		ChiTaRS3.1			BE090036	FAM160B1	chr10	116613584	-	FAM160B1	chr10	116614455	+
3UTR-intron	ENST00000409975	ENST00000254799		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409975	ENST00000439371		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409975	ENST00000502323		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409975	ENST00000545193		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409975	ENST00000508091		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000357765	ENST00000254799		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000357765	ENST00000439371		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000357765	ENST00000502323		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000357765	ENST00000545193		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000357765	ENST00000508091		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409347	ENST00000254799		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409347	ENST00000439371		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409347	ENST00000502323		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409347	ENST00000545193		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
3UTR-intron	ENST00000409347	ENST00000508091		ChiTaRS3.1			BM998716	UNC50	chr2	99234924	-	GRSF1	chr4	71703966	+
5CDS-intron	ENST00000534358	ENST00000395146		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000534358	ENST00000307808		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000534358	ENST00000544085		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000389506	ENST00000395146		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000389506	ENST00000307808		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000389506	ENST00000544085		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000354520	ENST00000395146		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000354520	ENST00000307808		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000354520	ENST00000544085		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
3UTR-intron	ENST00000420751	ENST00000395146		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
3UTR-intron	ENST00000420751	ENST00000307808		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
3UTR-intron	ENST00000420751	ENST00000544085		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
3UTR-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			AM050774	KMT2A	chr11	118355010	+	AFF1	chr4	87995281	+
intron-3CDS	ENST00000382009	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000382009	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000382009	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000382009	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000382009	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000237364	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000237364	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000237364	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000237364	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000237364	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000467087	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000467087	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000467087	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000467087	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000467087	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000412829	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000412829	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000412829	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000412829	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000412829	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000467011	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000467011	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000467011	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000467011	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000467011	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000465503	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000465503	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000465503	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000465503	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000465503	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000478425	ENST00000260970		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3CDS	ENST00000478425	ENST00000409714		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000478425	ENST00000462903		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000478425	ENST00000448752		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-3UTR	ENST00000478425	ENST00000482772		ChiTaRS3.1			BF930056	STIM2	chr4	26932226	-	PPIG	chr2	170492692	+
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF847846	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF847846	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF847846	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF847846	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000561743	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000561743	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-3UTR	ENST00000219281	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000539737	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000423271	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000565662	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000536939		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000456907		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000563149	ENST00000377793		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000539656		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000542163		ChiTaRS3.1			AA947586	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3CDS	ENST00000549920	ENST00000309428		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000549920	ENST00000585894		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000549920	ENST00000543197		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000550645	ENST00000309428		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000550645	ENST00000585894		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000550645	ENST00000543197		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000552588	ENST00000309428		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000552588	ENST00000585894		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000552588	ENST00000543197		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000549273	ENST00000309428		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000549273	ENST00000585894		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3CDS	ENST00000549273	ENST00000543197		ChiTaRS3.1			AI699466	RPL18	chr19	49118691	+	FAM134C	chr17	40734722	+
intron-3UTR	ENST00000559488	ENST00000334528		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000559488	ENST00000561249		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000559488	ENST00000559047		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000559488	ENST00000558197		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000559488	ENST00000559150		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000559488	ENST00000320930		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-3UTR	ENST00000571680	ENST00000334528		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000571680	ENST00000561249		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000571680	ENST00000559047		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000571680	ENST00000558197		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000571680	ENST00000559150		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000571680	ENST00000320930		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-3UTR	ENST00000435993	ENST00000334528		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000435993	ENST00000561249		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000435993	ENST00000559047		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000435993	ENST00000558197		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000435993	ENST00000559150		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000435993	ENST00000320930		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-3UTR	ENST00000560629	ENST00000334528		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000560629	ENST00000561249		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000560629	ENST00000559047		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000560629	ENST00000558197		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000560629	ENST00000559150		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000560629	ENST00000320930		ChiTaRS3.1			BC015906	ITGB3	chr17	45390031	+	FMN1	chr15	33063392	-
intron-intron	ENST00000187910	ENST00000292205		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000187910	ENST00000368474		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000187910	ENST00000368471		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000187910	ENST00000471068		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000402603	ENST00000292205		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000402603	ENST00000368474		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000402603	ENST00000368471		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000402603	ENST00000471068		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000292125	ENST00000292205		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000292125	ENST00000368474		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000292125	ENST00000368471		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000292125	ENST00000471068		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000601833	ENST00000292205		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000601833	ENST00000368474		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000601833	ENST00000368471		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-intron	ENST00000601833	ENST00000471068		ChiTaRS3.1			BE930876	PSG6	chr19	43698720	+	ADAR	chr1	154571429	-
intron-3CDS	ENST00000263634	ENST00000215793		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000263634	ENST00000439242		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000215793		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000439242		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000215793		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000439242		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000215793		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000439242		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000215793		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000439242		ChiTaRS3.1			AW449106	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
5UTR-3UTR	ENST00000450793	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000450793	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000450793	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000450793	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000538141	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000538141	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000538141	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000538141	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000380180	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000380180	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000380180	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000380180	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000318007	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000318007	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000318007	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000318007	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000437932	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000437932	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000437932	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000437932	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000317968	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000317968	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000317968	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000317968	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000542407	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000542407	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000542407	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000542407	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000508216	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000508216	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000508216	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000508216	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000514743	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000514743	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000514743	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000514743	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
intron-3UTR	ENST00000380176	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
intron-intron	ENST00000380176	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
intron-3UTR	ENST00000380176	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
intron-intron	ENST00000380176	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000359265	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000359265	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000359265	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000359265	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000512274	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000512274	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000512274	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000512274	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000504489	ENST00000240185		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000504489	ENST00000439080		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-3UTR	ENST00000504489	ENST00000315091		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
5UTR-intron	ENST00000504489	ENST00000480464		ChiTaRS3.1			DA887356	PDLIM5	chr4	95376414	+	TARDBP	chr1	11083670	+
In-frame	ENST00000360876	ENST00000360876		ChiTaRS3.1			CN267276	EIF3B	chr7	2402295	-	EIF3B	chr7	2402339	+
In-frame	ENST00000360876	ENST00000397011		ChiTaRS3.1			CN267276	EIF3B	chr7	2402295	-	EIF3B	chr7	2402339	+
In-frame	ENST00000397011	ENST00000360876		ChiTaRS3.1			CN267276	EIF3B	chr7	2402295	-	EIF3B	chr7	2402339	+
In-frame	ENST00000397011	ENST00000397011		ChiTaRS3.1			CN267276	EIF3B	chr7	2402295	-	EIF3B	chr7	2402339	+
intron-3UTR	ENST00000225737	ENST00000225737		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000225737	ENST00000395536		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000225737	ENST00000572155		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-3UTR	ENST00000395536	ENST00000225737		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000395536	ENST00000395536		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000395536	ENST00000572155		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-3UTR	ENST00000572155	ENST00000225737		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000572155	ENST00000395536		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
intron-intron	ENST00000572155	ENST00000572155		ChiTaRS3.1			BE930056	AKAP10	chr17	19812534	-	AKAP10	chr17	19809174	+
3UTR-3UTR	ENST00000007708	ENST00000007708		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
3UTR-3UTR	ENST00000007708	ENST00000503176		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
3UTR-intron	ENST00000007708	ENST00000511026		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
3UTR-3UTR	ENST00000503176	ENST00000007708		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
3UTR-3UTR	ENST00000503176	ENST00000503176		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
3UTR-intron	ENST00000503176	ENST00000511026		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
intron-3UTR	ENST00000511026	ENST00000007708		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
intron-3UTR	ENST00000511026	ENST00000503176		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
intron-intron	ENST00000511026	ENST00000511026		ChiTaRS3.1			BU607786	PDK2	chr17	48188218	-	PDK2	chr17	48188023	+
5CDS-intron	ENST00000255078	ENST00000366978		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000255078	ENST00000366977		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000255078	ENST00000422588		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000255078	ENST00000366975		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000255078	ENST00000366976		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000255078	ENST00000473995		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000366978		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000366977		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000422588		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000366975		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000366976		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
5CDS-intron	ENST00000539224	ENST00000473995		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000366978		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000366977		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000422588		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000366975		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000366976		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
intron-intron	ENST00000541229	ENST00000473995		ChiTaRS3.1			AW881166	IGHMBP2	chr11	68675683	-	NSL1	chr1	212903958	+
3UTR-intron	ENST00000014914	ENST00000377191		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
3UTR-intron	ENST00000014914	ENST00000430571		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
3UTR-intron	ENST00000014914	ENST00000539513		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
intron-intron	ENST00000542056	ENST00000377191		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
intron-intron	ENST00000542056	ENST00000430571		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
intron-intron	ENST00000542056	ENST00000539513		ChiTaRS3.1			AI917076	GPRC5A	chr12	13066290	-	XRN2	chr20	21322677	-
3UTR-3UTR	ENST00000333090	ENST00000333090		ChiTaRS3.1			AA506906	TSKU	chr11	76509184	+	TSKU	chr11	76508893	-
3UTR-3UTR	ENST00000333090	ENST00000527881		ChiTaRS3.1			AA506906	TSKU	chr11	76509184	+	TSKU	chr11	76508893	-
5CDS-3UTR	ENST00000527881	ENST00000333090		ChiTaRS3.1			AA506906	TSKU	chr11	76509184	+	TSKU	chr11	76508893	-
5CDS-3UTR	ENST00000527881	ENST00000527881		ChiTaRS3.1			AA506906	TSKU	chr11	76509184	+	TSKU	chr11	76508893	-
intron-intron	ENST00000256637	ENST00000265565		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000256637	ENST00000441517		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000256637	ENST00000545718		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000256637	ENST00000465628		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000538502	ENST00000265565		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000538502	ENST00000441517		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000538502	ENST00000545718		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000538502	ENST00000465628		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000482236	ENST00000265565		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000482236	ENST00000441517		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000482236	ENST00000545718		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
intron-intron	ENST00000482236	ENST00000465628		ChiTaRS3.1			AW869316	SORT1	chr1	109870707	-	SCAP	chr3	47466690	+
3UTR-3UTR	ENST00000261254	ENST00000261254		ChiTaRS3.1			BU740506	CCND2	chr12	4410395	-	CCND2	chr12	4411810	-
3UTR-intron	ENST00000261254	ENST00000541542		ChiTaRS3.1			BU740506	CCND2	chr12	4410395	-	CCND2	chr12	4411810	-
intron-3UTR	ENST00000541542	ENST00000261254		ChiTaRS3.1			BU740506	CCND2	chr12	4410395	-	CCND2	chr12	4411810	-
intron-intron	ENST00000541542	ENST00000541542		ChiTaRS3.1			BU740506	CCND2	chr12	4410395	-	CCND2	chr12	4411810	-
intron-intron	ENST00000405486	ENST00000282020		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000405486	ENST00000505687		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000405486	ENST00000510992		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000356244	ENST00000282020		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000356244	ENST00000505687		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000356244	ENST00000510992		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000455915	ENST00000282020		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000455915	ENST00000505687		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
intron-intron	ENST00000455915	ENST00000510992		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
5CDS-intron	ENST00000407260	ENST00000282020		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
5CDS-intron	ENST00000407260	ENST00000505687		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
5CDS-intron	ENST00000407260	ENST00000510992		ChiTaRS3.1			BI042006	RANGAP1	chr22	41642447	-	GRID2	chr4	94557617	-
3UTR-3UTR	ENST00000435070	ENST00000435070		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
3UTR-intron	ENST00000435070	ENST00000456847		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
3UTR-intron	ENST00000435070	ENST00000266679		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
3UTR-intron	ENST00000435070	ENST00000550987		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
3UTR-intron	ENST00000435070	ENST00000551516		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-3UTR	ENST00000456847	ENST00000435070		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000456847	ENST00000456847		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000456847	ENST00000266679		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000456847	ENST00000550987		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000456847	ENST00000551516		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-3UTR	ENST00000266679	ENST00000435070		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000266679	ENST00000456847		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000266679	ENST00000266679		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000266679	ENST00000550987		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000266679	ENST00000551516		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-3UTR	ENST00000550987	ENST00000435070		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000550987	ENST00000456847		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000550987	ENST00000266679		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000550987	ENST00000550987		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000550987	ENST00000551516		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-3UTR	ENST00000551516	ENST00000435070		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000551516	ENST00000456847		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000551516	ENST00000266679		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000551516	ENST00000550987		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000551516	ENST00000551516		ChiTaRS3.1			BG222116	CPSF6	chr12	69664946	+	CPSF6	chr12	69664461	-
intron-intron	ENST00000550746	ENST00000550746		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000550746	ENST00000319106		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000550746	ENST00000485960		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000550746	ENST00000393309		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000550746	ENST00000548679		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000319106	ENST00000550746		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000319106	ENST00000319106		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000319106	ENST00000485960		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000319106	ENST00000393309		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000319106	ENST00000548679		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000485960	ENST00000550746		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000485960	ENST00000319106		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000485960	ENST00000485960		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000485960	ENST00000393309		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000485960	ENST00000548679		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000393309	ENST00000550746		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000393309	ENST00000319106		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000393309	ENST00000485960		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000393309	ENST00000393309		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000393309	ENST00000548679		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000548679	ENST00000550746		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000548679	ENST00000319106		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000548679	ENST00000485960		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000548679	ENST00000393309		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
intron-intron	ENST00000548679	ENST00000548679		ChiTaRS3.1			BF906286	TBC1D15	chr12	72233931	-	TBC1D15	chr12	72233828	+
5CDS-intron	ENST00000356577	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000356577	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000290239	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381692	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000300278	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
5CDS-intron	ENST00000381679	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000319622		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000565184		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000389093		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000335181		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000568883		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000449901		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000565154		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000470533	ENST00000568459		ChiTaRS3.1			BE816196	SON	chr21	34929569	-	PKM	chr15	72502012	+
intron-intron	ENST00000375300	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375300	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375300	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375300	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375300	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000292055	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000292055	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000292055	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000292055	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000292055	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375288	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375288	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375288	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375288	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000375288	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000434315	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000434315	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000434315	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000434315	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000434315	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000542607	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000542607	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000542607	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000542607	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000542607	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000446921	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000446921	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000446921	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000446921	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000446921	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000488337	ENST00000361972		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000488337	ENST00000397167		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000488337	ENST00000379713		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000488337	ENST00000379711		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000488337	ENST00000397160		ChiTaRS3.1			W28136	SIK3	chr11	116900687	-	SFMBT2	chr10	7391745	+
intron-intron	ENST00000537978	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000537978	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000537978	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000537978	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000537978	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000537978	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000525139	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000256737	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531646	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000531568	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000537978		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000525139		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000256737		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000531646		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000531568		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-intron	ENST00000529242	ENST00000529242		ChiTaRS3.1			DA828576	ANO3	chr11	26581613	-	ANO3	chr11	26587439	-
intron-3UTR	ENST00000258198	ENST00000258198		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000258198	ENST00000379482		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000258198	ENST00000443351		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000258198	ENST00000570201		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000258198	ENST00000440564		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-3UTR	ENST00000379482	ENST00000258198		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000379482	ENST00000379482		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000379482	ENST00000443351		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000379482	ENST00000570201		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000379482	ENST00000440564		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-3UTR	ENST00000443351	ENST00000258198		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000443351	ENST00000379482		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000443351	ENST00000443351		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000443351	ENST00000570201		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000443351	ENST00000440564		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-3UTR	ENST00000570201	ENST00000258198		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000570201	ENST00000379482		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000570201	ENST00000443351		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000570201	ENST00000570201		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000570201	ENST00000440564		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-3UTR	ENST00000440564	ENST00000258198		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000440564	ENST00000379482		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000440564	ENST00000443351		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000440564	ENST00000570201		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-intron	ENST00000440564	ENST00000440564		ChiTaRS3.1			CB853306	DYNC1LI2	chr16	66755778	+	DYNC1LI2	chr16	66755561	-
intron-3CDS	ENST00000337137	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
intron-3CDS	ENST00000380995	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
intron-3CDS	ENST00000407381	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
intron-3CDS	ENST00000355704	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
intron-3CDS	ENST00000472791	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
intron-3CDS	ENST00000406733	ENST00000287143		ChiTaRS3.1			BI023286	TBC1D22A	chr22	47404646	+	PRG3	chr11	57147170	-
5CDS-intron	ENST00000252725	ENST00000432884		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
5CDS-intron	ENST00000252725	ENST00000262942		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
5CDS-intron	ENST00000252725	ENST00000471960		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
5CDS-intron	ENST00000451682	ENST00000432884		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
5CDS-intron	ENST00000451682	ENST00000262942		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
5CDS-intron	ENST00000451682	ENST00000471960		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
intron-intron	ENST00000474880	ENST00000432884		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
intron-intron	ENST00000474880	ENST00000262942		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
intron-intron	ENST00000474880	ENST00000471960		ChiTaRS3.1			BM049376	ARPC1B	chr7	98987606	+	ARPC1A	chr7	98972330	+
intron-3CDS	ENST00000368096	ENST00000448637		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000368096	ENST00000312675		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000368096	ENST00000543006		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-intron	ENST00000368096	ENST00000471917		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000368097	ENST00000448637		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000368097	ENST00000312675		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000368097	ENST00000543006		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-intron	ENST00000368097	ENST00000471917		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000478033	ENST00000448637		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000478033	ENST00000312675		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000478033	ENST00000543006		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-intron	ENST00000478033	ENST00000471917		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000320307	ENST00000448637		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000320307	ENST00000312675		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000320307	ENST00000543006		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-intron	ENST00000320307	ENST00000471917		ChiTaRS3.1			BE073626	TAGLN2	chr1	159889096	-	LPP	chr3	188124005	-
intron-3CDS	ENST00000315183	ENST00000254719		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-intron	ENST00000315183	ENST00000573924		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-3CDS	ENST00000562829	ENST00000254719		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-intron	ENST00000562829	ENST00000573924		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-3CDS	ENST00000395799	ENST00000254719		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-intron	ENST00000395799	ENST00000573924		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-3CDS	ENST00000432286	ENST00000254719		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-intron	ENST00000432286	ENST00000573924		ChiTaRS3.1			BE175576	TNRC6A	chr16	24813992	-	RPA1	chr17	1782975	-
intron-3CDS	ENST00000441714	ENST00000441714		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000441714	ENST00000345046		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000441714	ENST00000458587		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-intron	ENST00000441714	ENST00000468947		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000345046	ENST00000441714		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000345046	ENST00000345046		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000345046	ENST00000458587		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-intron	ENST00000345046	ENST00000468947		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000458587	ENST00000441714		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000458587	ENST00000345046		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000458587	ENST00000458587		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-intron	ENST00000458587	ENST00000468947		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000468947	ENST00000441714		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000468947	ENST00000345046		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000468947	ENST00000458587		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-intron	ENST00000468947	ENST00000468947		ChiTaRS3.1			BE077216	BCAP31	chrX	152989823	+	BCAP31	chrX	152969451	+
intron-3CDS	ENST00000345136	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000345136	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000357649	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354589	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000398774	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000322810	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000354958	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000356346	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000436759	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000345136		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000357649		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000354589		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000398774		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000322810		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000354958		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000356346		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000436759		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
intron-3CDS	ENST00000527096	ENST00000527096		ChiTaRS3.1			CF121826	PLEC	chr8	144991682	+	PLEC	chr8	144992039	-
3UTR-intron	ENST00000269489	ENST00000232564		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
3UTR-intron	ENST00000269489	ENST00000468623		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
3UTR-intron	ENST00000269489	ENST00000465153		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
3UTR-intron	ENST00000344731	ENST00000232564		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
3UTR-intron	ENST00000344731	ENST00000468623		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
3UTR-intron	ENST00000344731	ENST00000465153		ChiTaRS3.1			BE155686	SERPINB13	chr18	61264663	+	GNB4	chr3	179134926	-
intron-5UTR	ENST00000308482	ENST00000258947		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000308482	ENST00000509507		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000308482	ENST00000448105		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000308482	ENST00000416445		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000308482	ENST00000508679		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000308482	ENST00000510997		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000468950	ENST00000258947		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000468950	ENST00000509507		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000468950	ENST00000448105		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000468950	ENST00000416445		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000468950	ENST00000508679		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000468950	ENST00000510997		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000289175	ENST00000258947		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000289175	ENST00000509507		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000289175	ENST00000448105		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000289175	ENST00000416445		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000289175	ENST00000508679		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000289175	ENST00000510997		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000244815	ENST00000258947		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000244815	ENST00000509507		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000244815	ENST00000448105		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000244815	ENST00000416445		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000244815	ENST00000508679		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000244815	ENST00000510997		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000392000	ENST00000258947		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000392000	ENST00000509507		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-5UTR	ENST00000392000	ENST00000448105		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000392000	ENST00000416445		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000392000	ENST00000508679		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-intron	ENST00000392000	ENST00000510997		ChiTaRS3.1			DB151056	LRRFIP1	chr2	238603627	-	CALCOCO2	chr17	46908389	+
intron-3CDS	ENST00000380871	ENST00000300413		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-intron	ENST00000380871	ENST00000579618		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-intron	ENST00000380871	ENST00000582475		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-3CDS	ENST00000523261	ENST00000300413		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-intron	ENST00000523261	ENST00000579618		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-intron	ENST00000523261	ENST00000582475		ChiTaRS3.1			BI855676	NKX3-1	chr8	23536680	+	SNRPD1	chr18	19209074	+
intron-5UTR	ENST00000443617	ENST00000374379		ChiTaRS3.1			DA405736	HERC1	chr15	63933251	-	CLIC4	chr1	25071938	+
intron-3UTR	ENST00000443617	ENST00000497755		ChiTaRS3.1			DA405736	HERC1	chr15	63933251	-	CLIC4	chr1	25071938	+
Frame-shit	ENST00000380794	ENST00000338970		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
In-frame	ENST00000380794	ENST00000396203		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-3UTR	ENST00000380794	ENST00000416518		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-intron	ENST00000380794	ENST00000461368		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
In-frame	ENST00000405623	ENST00000338970		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
Frame-shit	ENST00000405623	ENST00000396203		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-3UTR	ENST00000405623	ENST00000416518		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-intron	ENST00000405623	ENST00000461368		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
Frame-shit	ENST00000264708	ENST00000338970		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
In-frame	ENST00000264708	ENST00000396203		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-3UTR	ENST00000264708	ENST00000416518		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-intron	ENST00000264708	ENST00000461368		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
In-frame	ENST00000395826	ENST00000338970		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
Frame-shit	ENST00000395826	ENST00000396203		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-3UTR	ENST00000395826	ENST00000416518		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
5CDS-intron	ENST00000395826	ENST00000461368		ChiTaRS3.1			CD251046	POMC	chr2	25387510	-	RPL14	chr3	40503530	+
intron-intron	ENST00000354989	ENST00000397817		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000219431		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000475280		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000397817		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000219431		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000475280		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000397817		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000219431		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000475280		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000397817		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000219431		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000475280		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000397817		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000219431		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000475280		ChiTaRS3.1			EL583106	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-3UTR	ENST00000265678	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000265678	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000510118	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000510118	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000503859	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000503859	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000481261	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000481261	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000405189	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000405189	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000366863	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000366863	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-3UTR	ENST00000509742	ENST00000216962		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000509742	ENST00000471359		ChiTaRS3.1			Z18966	RPS6KA2	chr6	166945450	+	PYGB	chr20	25277317	+
intron-intron	ENST00000440491	ENST00000604938		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401010		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000339388		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000369323		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000605317		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000479926		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000604894		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401009		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604938		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401010		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000339388		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000369323		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000605317		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000479926		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604894		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401009		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604938		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401010		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000339388		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000369323		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000605317		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000479926		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604894		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401009		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604938		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401010		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000339388		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000369323		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000605317		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000479926		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604894		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401009		ChiTaRS3.1			AB042556	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000267485	ENST00000356206		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000267485	ENST00000521321		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000267485	ENST00000358689		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000267485	ENST00000417069		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000334342	ENST00000356206		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000334342	ENST00000521321		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000334342	ENST00000358689		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000334342	ENST00000417069		ChiTaRS3.1			BF084356	C14orf37	chr14	58686232	-	ENTPD4	chr8	23267941	+
intron-intron	ENST00000302277	ENST00000318063		ChiTaRS3.1			DA397336	ZNF804A	chr2	185676287	+	MICU3	chr8	16953200	+
intron-intron	ENST00000302277	ENST00000519866		ChiTaRS3.1			DA397336	ZNF804A	chr2	185676287	+	MICU3	chr8	16953200	+
intron-intron	ENST00000451564	ENST00000393376		ChiTaRS3.1			H65666	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000473553		ChiTaRS3.1			H65666	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000417368		ChiTaRS3.1			H65666	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-3UTR	ENST00000346798	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000354192	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000348990	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000357903	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000358918	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000359726	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000448388	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000440126	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000439274	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-3UTR	ENST00000474136	ENST00000534336		ChiTaRS3.1			BP198916	APP	chr21	27253345	-	MALAT1	chr11	65266515	+
intron-intron	ENST00000517417	ENST00000517417		ChiTaRS3.1			AI214146	PCDHGA1	chr5	140870412	+	PCDHGA1	chr5	140870164	-
intron-intron	ENST00000517417	ENST00000378105		ChiTaRS3.1			AI214146	PCDHGA1	chr5	140870412	+	PCDHGA1	chr5	140870164	-
intron-intron	ENST00000378105	ENST00000517417		ChiTaRS3.1			AI214146	PCDHGA1	chr5	140870412	+	PCDHGA1	chr5	140870164	-
intron-intron	ENST00000378105	ENST00000378105		ChiTaRS3.1			AI214146	PCDHGA1	chr5	140870412	+	PCDHGA1	chr5	140870164	-
intron-intron	ENST00000447998	ENST00000498485		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000447998	ENST00000259457		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000447998	ENST00000536392		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000424236	ENST00000498485		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000424236	ENST00000259457		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000424236	ENST00000536392		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000446090	ENST00000498485		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000446090	ENST00000259457		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000446090	ENST00000536392		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000521093	ENST00000498485		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000521093	ENST00000259457		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
intron-intron	ENST00000521093	ENST00000536392		ChiTaRS3.1			BF831316	DCTN4	chr5	150112318	-	PSMB7	chr9	127120646	+
3UTR-3UTR	ENST00000369817	ENST00000254663		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000369817	ENST00000373332		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-3UTR	ENST00000369817	ENST00000555827		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000369817	ENST00000409736		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000369817	ENST00000422984		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000369817	ENST00000429612		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000369817	ENST00000480859		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-3UTR	ENST00000479366	ENST00000254663		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-intron	ENST00000479366	ENST00000373332		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-3UTR	ENST00000479366	ENST00000555827		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-intron	ENST00000479366	ENST00000409736		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-intron	ENST00000479366	ENST00000422984		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-intron	ENST00000479366	ENST00000429612		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-intron	ENST00000479366	ENST00000480859		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-3UTR	ENST00000424325	ENST00000254663		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000424325	ENST00000373332		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-3UTR	ENST00000424325	ENST00000555827		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000424325	ENST00000409736		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000424325	ENST00000422984		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000424325	ENST00000429612		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000424325	ENST00000480859		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-3UTR	ENST00000406022	ENST00000254663		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000406022	ENST00000373332		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-3UTR	ENST00000406022	ENST00000555827		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000406022	ENST00000409736		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000406022	ENST00000422984		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000406022	ENST00000429612		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
3UTR-intron	ENST00000406022	ENST00000480859		ChiTaRS3.1			AA813916	RPL10	chrX	153629200	-	SCLY	chr2	239007567	-
intron-3UTR	ENST00000397898	ENST00000397898		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000397898	ENST00000332859		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-5UTR	ENST00000397898	ENST00000479153		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000397898	ENST00000411651		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000397898	ENST00000397893		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000332859	ENST00000397898		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000332859	ENST00000332859		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-5UTR	ENST00000332859	ENST00000479153		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000332859	ENST00000411651		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000332859	ENST00000397893		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000479153	ENST00000397898		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000479153	ENST00000332859		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-5UTR	ENST00000479153	ENST00000479153		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000479153	ENST00000411651		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000479153	ENST00000397893		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000411651	ENST00000397898		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000411651	ENST00000332859		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-5UTR	ENST00000411651	ENST00000479153		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000411651	ENST00000411651		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000411651	ENST00000397893		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000397893	ENST00000397898		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-3UTR	ENST00000397893	ENST00000332859		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-5UTR	ENST00000397893	ENST00000479153		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000397893	ENST00000411651		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000397893	ENST00000397893		ChiTaRS3.1			W52396	SUMO3	chr21	46226132	+	SUMO3	chr21	46226073	-
intron-intron	ENST00000366647	ENST00000366647		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000366647	ENST00000366646		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000366647	ENST00000469332		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000366646	ENST00000366647		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000366646	ENST00000366646		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000366646	ENST00000469332		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000469332	ENST00000366647		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000469332	ENST00000366646		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000469332	ENST00000469332		ChiTaRS3.1			AW810786	GNPAT	chr1	231393186	-	GNPAT	chr1	231392635	+
intron-intron	ENST00000544246	ENST00000229195		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000544246	ENST00000418359		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000544246	ENST00000548230		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000544246	ENST00000551483		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377865	ENST00000229195		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377865	ENST00000418359		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377865	ENST00000548230		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377865	ENST00000551483		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000456367	ENST00000229195		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000456367	ENST00000418359		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000456367	ENST00000548230		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000456367	ENST00000551483		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000328454	ENST00000229195		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000328454	ENST00000418359		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000328454	ENST00000548230		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000328454	ENST00000551483		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377861	ENST00000229195		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377861	ENST00000418359		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377861	ENST00000548230		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-intron	ENST00000377861	ENST00000551483		ChiTaRS3.1			BC008476	PCDH9	chr13	67748432	-	CNOT2	chr12	70677266	+
intron-3UTR	ENST00000370331	ENST00000389834		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000370331	ENST00000448392		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000370331	ENST00000307216		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000370331	ENST00000568432		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-3UTR	ENST00000540033	ENST00000389834		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000540033	ENST00000448392		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000540033	ENST00000307216		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000540033	ENST00000568432		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-3UTR	ENST00000543509	ENST00000389834		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000543509	ENST00000448392		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000543509	ENST00000307216		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000543509	ENST00000568432		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-3UTR	ENST00000491940	ENST00000389834		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000491940	ENST00000448392		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000491940	ENST00000307216		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
intron-intron	ENST00000491940	ENST00000568432		ChiTaRS3.1			BM475516	EVI5	chr1	93175639	-	TMEM87A	chr15	42503337	+
Frame-shit	ENST00000373960	ENST00000373960		ChiTaRS3.1			CV336076	DES	chr2	220285227	-	DES	chr2	220290425	-
intron-intron	ENST00000532226	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532226	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000525151	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000438298	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000442928	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000532353	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000420651	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000449449	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000456352	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440001	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000440395	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000606892	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000532226		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000525151		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000438298		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000442928		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000532353		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000420651		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000449449		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000456352		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000440001		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000440395		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000606892		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
intron-intron	ENST00000607066	ENST00000607066		ChiTaRS3.1			BU679926	TRAF3IP2-AS1	chr6	111880270	+	TRAF3IP2-AS1	chr6	111880375	-
3UTR-3UTR	ENST00000217971	ENST00000217971		ChiTaRS3.1			AW946376	PGRMC1	chrX	118377951	-	PGRMC1	chrX	118378319	+
3UTR-3UTR	ENST00000217971	ENST00000535419		ChiTaRS3.1			AW946376	PGRMC1	chrX	118377951	-	PGRMC1	chrX	118378319	+
3UTR-3UTR	ENST00000535419	ENST00000217971		ChiTaRS3.1			AW946376	PGRMC1	chrX	118377951	-	PGRMC1	chrX	118378319	+
3UTR-3UTR	ENST00000535419	ENST00000535419		ChiTaRS3.1			AW946376	PGRMC1	chrX	118377951	-	PGRMC1	chrX	118378319	+
intron-3UTR	ENST00000376088	ENST00000376088		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376088	ENST00000376091		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376088	ENST00000482218		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376088	ENST00000376108		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376088	ENST00000307367		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-3UTR	ENST00000376091	ENST00000376088		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376091	ENST00000376091		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376091	ENST00000482218		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376091	ENST00000376108		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376091	ENST00000307367		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-3UTR	ENST00000482218	ENST00000376088		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000482218	ENST00000376091		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000482218	ENST00000482218		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000482218	ENST00000376108		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000482218	ENST00000307367		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-3UTR	ENST00000376108	ENST00000376088		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376108	ENST00000376091		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376108	ENST00000482218		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376108	ENST00000376108		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000376108	ENST00000307367		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-3UTR	ENST00000307367	ENST00000376088		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000307367	ENST00000376091		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000307367	ENST00000482218		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000307367	ENST00000376108		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
intron-intron	ENST00000307367	ENST00000307367		ChiTaRS3.1			EB386816	CLCN5	chrX	49843306	-	CLCN5	chrX	49860503	-
Frame-shit	ENST00000274487	ENST00000262462		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
Frame-shit	ENST00000274487	ENST00000395266		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
Frame-shit	ENST00000274487	ENST00000506176		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000262462		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000395266		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
intron-3CDS	ENST00000509467	ENST00000506176		ChiTaRS3.1			DN914996	ADAMTS19	chr5	128797450	+	SLC27A6	chr5	128364037	+
3UTR-intron	ENST00000336375	ENST00000397195		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
3UTR-intron	ENST00000336375	ENST00000572915		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
3UTR-intron	ENST00000336375	ENST00000451360		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000397195		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000572915		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000475741	ENST00000451360		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000397195		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000572915		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000351273	ENST00000451360		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000397195		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000572915		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000489084	ENST00000451360		ChiTaRS3.1			BQ372756	ACPP	chr3	132077108	+	PAFAH1B1	chr17	2578733	-
intron-intron	ENST00000383202	ENST00000383202		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000383202	ENST00000236698		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000383202	ENST00000434713		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000383202	ENST00000480733		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000383202	ENST00000536929		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000236698	ENST00000383202		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000236698	ENST00000236698		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000236698	ENST00000434713		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000236698	ENST00000480733		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000236698	ENST00000536929		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000434713	ENST00000383202		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000434713	ENST00000236698		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000434713	ENST00000434713		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000434713	ENST00000480733		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000434713	ENST00000536929		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000480733	ENST00000383202		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000480733	ENST00000236698		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000480733	ENST00000434713		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000480733	ENST00000480733		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000480733	ENST00000536929		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000536929	ENST00000383202		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000536929	ENST00000236698		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000536929	ENST00000434713		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000536929	ENST00000480733		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-intron	ENST00000536929	ENST00000536929		ChiTaRS3.1			AA526196	STAG1	chr3	136061601	-	STAG1	chr3	136061506	+
intron-3UTR	ENST00000253778	ENST00000253778		ChiTaRS3.1			AW867686	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-intron	ENST00000253778	ENST00000520165		ChiTaRS3.1			AW867686	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-3UTR	ENST00000520165	ENST00000253778		ChiTaRS3.1			AW867686	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-intron	ENST00000520165	ENST00000520165		ChiTaRS3.1			AW867686	GFPT2	chr5	179727892	+	GFPT2	chr5	179728102	-
intron-3CDS	ENST00000379350	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379350	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379350	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000379350	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379350	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379350	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379350	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379350	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000379348	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379348	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379348	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000379348	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379348	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379348	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379348	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379348	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000332995	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000332995	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000332995	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000332995	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000332995	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000332995	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000332995	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000332995	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000482982	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000482982	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000482982	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000482982	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000482982	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000482982	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000482982	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000482982	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000379345	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379345	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379345	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000379345	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379345	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379345	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379345	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379345	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000457702	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000457702	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000457702	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000457702	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000457702	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000457702	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000457702	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000457702	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000379335	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379335	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379335	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000379335	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379335	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379335	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379335	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379335	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3CDS	ENST00000379329	ENST00000379350		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379329	ENST00000379348		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379329	ENST00000332995		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000379329	ENST00000482982		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379329	ENST00000379345		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-5UTR	ENST00000379329	ENST00000457702		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379329	ENST00000379335		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-intron	ENST00000379329	ENST00000379329		ChiTaRS3.1			DA794726	PHACTR1	chr6	13287893	+	PHACTR1	chr6	13053649	+
intron-3UTR	ENST00000607772	ENST00000607772		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000607772	ENST00000479339		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000607772	ENST00000433165		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-3UTR	ENST00000479339	ENST00000607772		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000479339	ENST00000479339		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000479339	ENST00000433165		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-3UTR	ENST00000433165	ENST00000607772		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000433165	ENST00000479339		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
intron-intron	ENST00000433165	ENST00000433165		ChiTaRS3.1			AA406296	CNKSR3	chr6	154718677	+	CNKSR3	chr6	154719115	-
5CDS-intron	ENST00000310144	ENST00000544840		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000310144	ENST00000434554		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000310144	ENST00000225573		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000310144	ENST00000534893		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
intron-intron	ENST00000582420	ENST00000544840		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
intron-intron	ENST00000582420	ENST00000434554		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
intron-intron	ENST00000582420	ENST00000225573		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
intron-intron	ENST00000582420	ENST00000534893		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000580864	ENST00000544840		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000580864	ENST00000434554		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000580864	ENST00000225573		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000580864	ENST00000534893		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000375812	ENST00000544840		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000375812	ENST00000434554		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000375812	ENST00000225573		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000375812	ENST00000534893		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000581882	ENST00000544840		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000581882	ENST00000434554		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000581882	ENST00000225573		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
5CDS-intron	ENST00000581882	ENST00000534893		ChiTaRS3.1			AB209036	PSMC5	chr17	61908877	+	PNPO	chr17	46026318	+
intron-intron	ENST00000301180	ENST00000225972		ChiTaRS3.1			BF336736	DIP2B	chr12	50924425	-	LRRC59	chr17	48469238	-
intron-intron	ENST00000301180	ENST00000576448		ChiTaRS3.1			BF336736	DIP2B	chr12	50924425	-	LRRC59	chr17	48469238	-
intron-3CDS	ENST00000519807	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000519807	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000009589	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000009589	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000524349	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000524349	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000520490	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000520490	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000520627	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000520627	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000521262	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000521262	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000523936	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000523936	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000519606	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000519606	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000518875	ENST00000327726		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000518875	ENST00000592860		ChiTaRS3.1			BP428696	RPS20	chr8	56986958	-	CFD	chr19	861721	+
intron-3CDS	ENST00000521861	ENST00000354655		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000479936		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000393081		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000433418		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000356116		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000354273		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000521861	ENST00000369410		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-3CDS	ENST00000276682	ENST00000354655		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000479936		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000393081		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000433418		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000356116		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000354273		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-intron	ENST00000276682	ENST00000369410		ChiTaRS3.1			AI302586	EIF3H	chr8	117658757	+	ACSL5	chr10	114181373	-
intron-3UTR	ENST00000487143	ENST00000589123		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000346156		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000395111		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000586919		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000341919		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000590282		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000443272		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000487143	ENST00000588839		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-3UTR	ENST00000355999	ENST00000589123		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000346156		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000395111		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000586919		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000341919		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000590282		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000443272		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
intron-intron	ENST00000355999	ENST00000588839		ChiTaRS3.1			AA876316	STK39	chr2	169078843	+	NFIC	chr19	3464961	+
Frame-shit	ENST00000582888	ENST00000361658		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000582888	ENST00000395544		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000582888	ENST00000580130		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000602676	ENST00000361658		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000602676	ENST00000395544		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000602676	ENST00000580130		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000322297	ENST00000361658		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000322297	ENST00000395544		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000322297	ENST00000580130		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000583542	ENST00000361658		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000583542	ENST00000395544		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000583542	ENST00000580130		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-3CDS	ENST00000588673	ENST00000361658		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-3CDS	ENST00000588673	ENST00000395544		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-intron	ENST00000588673	ENST00000580130		ChiTaRS3.1			AK098316	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-5UTR	ENST00000399302	ENST00000399302		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
5CDS-3UTR	ENST00000399302	ENST00000527250		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
5CDS-5UTR	ENST00000399302	ENST00000527788		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
intron-5UTR	ENST00000527250	ENST00000399302		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
intron-3UTR	ENST00000527250	ENST00000527250		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
intron-5UTR	ENST00000527250	ENST00000527788		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
5CDS-5UTR	ENST00000527788	ENST00000399302		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
5CDS-3UTR	ENST00000527788	ENST00000527250		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
5CDS-5UTR	ENST00000527788	ENST00000527788		ChiTaRS3.1			AA053856	QSER1	chr11	32956981	+	QSER1	chr11	32948701	+
intron-intron	ENST00000437508	ENST00000248929		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-intron	ENST00000437508	ENST00000454798		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-intron	ENST00000494872	ENST00000248929		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-intron	ENST00000494872	ENST00000454798		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-intron	ENST00000338700	ENST00000248929		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-intron	ENST00000338700	ENST00000454798		ChiTaRS3.1			BF934766	TRIM2	chr4	154197383	+	SGSM3	chr22	40800105	+
intron-3CDS	ENST00000481781	ENST00000376929		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000481781	ENST00000506690		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000481781	ENST00000389805		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000481781	ENST00000402874		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000481781	ENST00000510187		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000481781	ENST00000360718		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-3CDS	ENST00000397270	ENST00000376929		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000397270	ENST00000506690		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000397270	ENST00000389805		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000397270	ENST00000402874		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000397270	ENST00000510187		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-intron	ENST00000397270	ENST00000360718		ChiTaRS3.1			BU076816	INS-IGF2	chr11	2150536	+	SQSTM1	chr5	179263539	+
intron-3CDS	ENST00000356692	ENST00000372621		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000356692	ENST00000541520		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000356692	ENST00000475060		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000356692	ENST00000543104		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000356692	ENST00000372616		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000295862	ENST00000372621		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000295862	ENST00000541520		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000295862	ENST00000475060		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000295862	ENST00000543104		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000295862	ENST00000372616		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000394284	ENST00000372621		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000394284	ENST00000541520		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000394284	ENST00000475060		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000394284	ENST00000543104		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000394284	ENST00000372616		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000495566	ENST00000372621		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-3CDS	ENST00000495566	ENST00000541520		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000495566	ENST00000475060		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000495566	ENST00000543104		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000495566	ENST00000372616		ChiTaRS3.1			BF876536	PPP4R2	chr3	73063651	-	CTPS1	chr1	41475144	+
intron-intron	ENST00000441068	ENST00000441068		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000254090		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000369272		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000441068	ENST00000465173		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000441068		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000254090		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000369272		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000254090	ENST00000465173		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000441068		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000254090		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000369272		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000369272	ENST00000465173		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000441068		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000254090		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000369272		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-intron	ENST00000465173	ENST00000465173		ChiTaRS3.1			AW972276	FMO5	chr1	146656768	-	FMO5	chr1	146656863	+
intron-5UTR	ENST00000325324	ENST00000584667		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000325324	ENST00000355423		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000325324	ENST00000579864		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409296	ENST00000584667		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409296	ENST00000355423		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409296	ENST00000579864		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409534	ENST00000584667		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409534	ENST00000355423		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000409534	ENST00000579864		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000512177	ENST00000584667		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000512177	ENST00000355423		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-5UTR	ENST00000512177	ENST00000579864		ChiTaRS3.1			CB155026	IPO11	chr5	61819528	+	SAP30BP	chr17	73663450	+
intron-3UTR	ENST00000368679	ENST00000394609		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000405240		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000357376		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000317610		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000357732		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000337526		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000394611		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368679	ENST00000404909		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-5UTR	ENST00000368679	ENST00000486085		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000368679	ENST00000354474		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000368679	ENST00000402434		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000394609		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000405240		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000357376		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000317610		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000357732		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000337526		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000394611		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000368676	ENST00000404909		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-5UTR	ENST00000368676	ENST00000486085		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000368676	ENST00000354474		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000368676	ENST00000402434		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000394609		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000405240		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000357376		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000317610		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000357732		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000337526		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000394611		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-3UTR	ENST00000467145	ENST00000404909		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-5UTR	ENST00000467145	ENST00000486085		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000467145	ENST00000354474		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000467145	ENST00000402434		ChiTaRS3.1			BG009006	ADAM12	chr10	127704285	+	RTN4	chr2	55199733	-
intron-intron	ENST00000540275	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000540275	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000540275	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000540275	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000540275	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000540275	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000452085	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000537543	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000331677	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000359564	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000540275		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000452085		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000537543		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000331677		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000359564		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
intron-intron	ENST00000606265	ENST00000606265		ChiTaRS3.1			BF959216	DSE	chr6	116599359	+	DSE	chr6	116599267	-
Frame-shit	ENST00000330498	ENST00000330498		ChiTaRS3.1			BI517676	SLC5A2	chr16	31500053	+	SLC5A2	chr16	31499745	-
5CDS-intron	ENST00000330498	ENST00000564197		ChiTaRS3.1			BI517676	SLC5A2	chr16	31500053	+	SLC5A2	chr16	31499745	-
intron-3CDS	ENST00000564197	ENST00000330498		ChiTaRS3.1			BI517676	SLC5A2	chr16	31500053	+	SLC5A2	chr16	31499745	-
intron-intron	ENST00000564197	ENST00000564197		ChiTaRS3.1			BI517676	SLC5A2	chr16	31500053	+	SLC5A2	chr16	31499745	-
5CDS-intron	ENST00000355528	ENST00000517913		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000355528	ENST00000435422		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000355528	ENST00000447401		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000355528	ENST00000337851		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000397466	ENST00000517913		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000397466	ENST00000435422		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000397466	ENST00000447401		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000397466	ENST00000337851		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000539345	ENST00000517913		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000539345	ENST00000435422		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000539345	ENST00000447401		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
5CDS-intron	ENST00000539345	ENST00000337851		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000576691	ENST00000517913		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000576691	ENST00000435422		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000576691	ENST00000447401		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000576691	ENST00000337851		ChiTaRS3.1			BF931286	TBCD	chr17	80879419	+	SGCD	chr5	156077901	+
intron-intron	ENST00000343823	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000343823	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000343823	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000343823	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000343823	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000343823	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000250635	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000545394	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000428278	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
5UTR-intron	ENST00000521652	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000295065		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000379383		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000404530		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000490459		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000426310		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-intron	ENST00000524263	ENST00000407893		ChiTaRS3.1			BI335876	ASH2L	chr8	37963591	-	MEMO1	chr2	32264376	+
intron-3CDS	ENST00000358763	ENST00000230122		ChiTaRS3.1			BQ344906	SYN3	chr22	33258806	+	ZBTB24	chr6	109802624	+
intron-3CDS	ENST00000332840	ENST00000230122		ChiTaRS3.1			BQ344906	SYN3	chr22	33258806	+	ZBTB24	chr6	109802624	+
intron-3CDS	ENST00000467095	ENST00000230122		ChiTaRS3.1			BQ344906	SYN3	chr22	33258806	+	ZBTB24	chr6	109802624	+
intron-intron	ENST00000589222	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000589222	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000589222	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000407086	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000407086	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000407086	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000390652	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000390652	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000390652	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000408905	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000408905	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000408905	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588462	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588462	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588462	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585744	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585744	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585744	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588874	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588874	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000588874	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585812	ENST00000271732		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585812	ENST00000540514		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000585812	ENST00000479757		ChiTaRS3.1			BG956566	BCAS3	chr17	59420542	-	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000261712	ENST00000524630		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000529919		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000399039		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000360682		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000361796		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000361391		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000530094		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000428599		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000361332		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000527467		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000415361		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000532245		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000532463		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000528232		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000529986		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000531014		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000358694		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000526772		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000532787		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000533667		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000529873		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000525902		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000529526		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000532649		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000426142		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000532844		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000528621		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000399050		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000526357		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000530748		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000534579		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000261712	ENST00000526938		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000524630		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000529919		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000399039		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000360682		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000361796		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000361391		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000530094		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000428599		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000361332		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000527467		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000415361		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000532245		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000532463		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000528232		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000529986		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000531014		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000358694		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000526772		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000532787		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000533667		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000529873		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000525902		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000529526		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000532649		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000426142		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000532844		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000528621		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000399050		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000526357		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000530748		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000534579		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000457654	ENST00000526938		ChiTaRS3.1			AW835516	PSMD11	chr17	30777413	-	CTNND1	chr11	57536507	+
intron-intron	ENST00000244661	ENST00000494118		ChiTaRS3.1			DB156306	HIST1H3B	chr6	26031824	-	ZNF385D	chr3	22269726	+
intron-intron	ENST00000244661	ENST00000281523		ChiTaRS3.1			DB156306	HIST1H3B	chr6	26031824	-	ZNF385D	chr3	22269726	+
Frame-shit	ENST00000322652	ENST00000322652		ChiTaRS3.1			AW369466	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000322652	ENST00000580398		ChiTaRS3.1			AW369466	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000580398	ENST00000322652		ChiTaRS3.1			AW369466	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
Frame-shit	ENST00000580398	ENST00000580398		ChiTaRS3.1			AW369466	SUZ12	chr17	30320303	+	SUZ12	chr17	30310084	+
intron-intron	ENST00000608083	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000608083	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377855	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000545482	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000361521	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377842	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000377845	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000608083		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000377855		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000545482		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000361521		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000377842		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000377845		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-intron	ENST00000541130	ENST00000541130		ChiTaRS3.1			U91316	ACOT7	chr1	6324403	+	ACOT7	chr1	6453438	-
intron-3UTR	ENST00000388768	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000388768	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000602465	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000602465	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000265865	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000265865	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000399200	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000399200	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000454950	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000454950	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000472394	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000472394	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3UTR	ENST00000342616	ENST00000388768		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000602465		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000265865		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000399200		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000454950		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000472394		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-intron	ENST00000342616	ENST00000342616		ChiTaRS3.1			AA828786	RUFY2	chr10	70103341	-	RUFY2	chr10	70103342	+
intron-3CDS	ENST00000448418	ENST00000324096		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000448418	ENST00000597681		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000448418	ENST00000544059		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-3CDS	ENST00000358117	ENST00000324096		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000358117	ENST00000597681		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000358117	ENST00000544059		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-3CDS	ENST00000524667	ENST00000324096		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000524667	ENST00000597681		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000524667	ENST00000544059		ChiTaRS3.1			AL036336	MPPED2	chr11	30605781	+	MAP1S	chr19	17844000	+
intron-intron	ENST00000450966	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000450966	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000450966	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000450966	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000251722	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000251722	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000251722	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000251722	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000427112	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000427112	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000427112	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000427112	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000496298	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000496298	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000496298	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000496298	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000409945	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000409945	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000409945	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000409945	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000443711	ENST00000304979		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000443711	ENST00000372550		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-intron	ENST00000443711	ENST00000372549		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3UTR	ENST00000443711	ENST00000455203		ChiTaRS3.1			BE707176	USP40	chr2	234431898	+	PPIH	chr1	43133204	-
intron-3CDS	ENST00000302708	ENST00000542672		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3CDS	ENST00000302708	ENST00000366578		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3UTR	ENST00000302708	ENST00000492634		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-intron	ENST00000302708	ENST00000546208		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3CDS	ENST00000378840	ENST00000542672		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3CDS	ENST00000378840	ENST00000366578		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3UTR	ENST00000378840	ENST00000492634		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-intron	ENST00000378840	ENST00000546208		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3CDS	ENST00000532410	ENST00000542672		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3CDS	ENST00000532410	ENST00000366578		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-3UTR	ENST00000532410	ENST00000492634		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-intron	ENST00000532410	ENST00000546208		ChiTaRS3.1			BX501306	ALKBH3	chr11	43903015	+	ACTN2	chr1	236891005	+
intron-intron	ENST00000447110	ENST00000538935		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000447110	ENST00000359570		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000447110	ENST00000450745		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000447110	ENST00000455936		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000447110	ENST00000474278		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000581552	ENST00000538935		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000581552	ENST00000359570		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000581552	ENST00000450745		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000581552	ENST00000455936		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000581552	ENST00000474278		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000584803	ENST00000538935		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000584803	ENST00000359570		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000584803	ENST00000450745		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000584803	ENST00000455936		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000584803	ENST00000474278		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000583222	ENST00000538935		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000583222	ENST00000359570		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000583222	ENST00000450745		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000583222	ENST00000455936		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
intron-intron	ENST00000583222	ENST00000474278		ChiTaRS3.1			BF849586	PIK3R5	chr17	8863944	-	INPP5D	chr2	234105106	-
3UTR-3CDS	ENST00000481739	ENST00000481739		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000481739	ENST00000356384		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000481739	ENST00000540193		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3CDS	ENST00000356384	ENST00000481739		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000356384	ENST00000356384		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000356384	ENST00000540193		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3CDS	ENST00000540193	ENST00000481739		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000540193	ENST00000356384		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
3UTR-3UTR	ENST00000540193	ENST00000540193		ChiTaRS3.1			AW881216	RXRA	chr9	137328705	+	RXRA	chr9	137325987	+
intron-intron	ENST00000307961	ENST00000476049		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-intron	ENST00000307961	ENST00000394052		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-intron	ENST00000568588	ENST00000476049		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-intron	ENST00000568588	ENST00000394052		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-intron	ENST00000564517	ENST00000476049		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-intron	ENST00000564517	ENST00000394052		ChiTaRS3.1			AV754796	RPL4	chr15	66794352	-	KRT222	chr17	38812069	-
intron-3CDS	ENST00000521264	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000521264	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000521264	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000521264	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522314	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000522314	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000520382	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000520382	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000524142	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000524142	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000313115	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000313115	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000370661		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000316077		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000522710	ENST00000370663		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-5UTR	ENST00000522710	ENST00000495432		ChiTaRS3.1			BI862136	ATOX1	chr5	151122445	+	MAP7D3	chrX	135309592	-
intron-3CDS	ENST00000534328	ENST00000388922		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000534328	ENST00000550683		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000534328	ENST00000419526		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000534328	ENST00000550084		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000388922		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000550683		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000332231	ENST00000419526		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000332231	ENST00000550084		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000388922		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000550683		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000448903	ENST00000419526		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000448903	ENST00000550084		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000388922		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000550683		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-3CDS	ENST00000525891	ENST00000419526		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000525891	ENST00000550084		ChiTaRS3.1			AA368346	AP2A2	chr11	1006527	-	ACVRL1	chr12	52312792	+
intron-intron	ENST00000404039	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
intron-intron	ENST00000406326	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
intron-intron	ENST00000377770	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
intron-intron	ENST00000332007	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
intron-intron	ENST00000496611	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
intron-intron	ENST00000427557	ENST00000390548		ChiTaRS3.1			AB073646	DPP6	chr7	153966050	+	IGHG1	chr15	22587484	+
In-frame	ENST00000341845	ENST00000341845		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000341845	ENST00000430046		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000341845	ENST00000512348		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
5CDS-intron	ENST00000341845	ENST00000287761		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000430046	ENST00000341845		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000430046	ENST00000430046		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000430046	ENST00000512348		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
5CDS-intron	ENST00000430046	ENST00000287761		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000512348	ENST00000341845		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000512348	ENST00000430046		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
In-frame	ENST00000512348	ENST00000512348		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
5CDS-intron	ENST00000512348	ENST00000287761		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
intron-3CDS	ENST00000287761	ENST00000341845		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
intron-3CDS	ENST00000287761	ENST00000430046		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
intron-3CDS	ENST00000287761	ENST00000512348		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
intron-intron	ENST00000287761	ENST00000287761		ChiTaRS3.1			BE005026	FCHO2	chr5	72373320	+	FCHO2	chr5	72354258	+
3UTR-3CDS	ENST00000534336	ENST00000380394		ChiTaRS3.1			BF815926	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-intron	ENST00000534336	ENST00000498815		ChiTaRS3.1			BF815926	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000380384		ChiTaRS3.1			BF815926	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000315377		ChiTaRS3.1			BF815926	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
3UTR-5UTR	ENST00000534336	ENST00000380381		ChiTaRS3.1			BF815926	MALAT1	chr11	65266525	-	RPS6	chr9	19379594	-
intron-3UTR	ENST00000355238	ENST00000355238		ChiTaRS3.1			AA846916	SYNCRIP	chr6	86322014	+	SYNCRIP	chr6	86322014	-
intron-intron	ENST00000355238	ENST00000369622		ChiTaRS3.1			AA846916	SYNCRIP	chr6	86322014	+	SYNCRIP	chr6	86322014	-
intron-3UTR	ENST00000369622	ENST00000355238		ChiTaRS3.1			AA846916	SYNCRIP	chr6	86322014	+	SYNCRIP	chr6	86322014	-
intron-intron	ENST00000369622	ENST00000369622		ChiTaRS3.1			AA846916	SYNCRIP	chr6	86322014	+	SYNCRIP	chr6	86322014	-
intron-3CDS	ENST00000298925	ENST00000399161		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000298925	ENST00000428368		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000298925	ENST00000407844		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000298925	ENST00000471668		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000357134	ENST00000399161		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000357134	ENST00000428368		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000357134	ENST00000407844		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000357134	ENST00000471668		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000325319	ENST00000399161		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000325319	ENST00000428368		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000325319	ENST00000407844		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000325319	ENST00000471668		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000532434	ENST00000399161		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000532434	ENST00000428368		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000532434	ENST00000407844		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000532434	ENST00000471668		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000529218	ENST00000399161		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-3CDS	ENST00000529218	ENST00000428368		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000529218	ENST00000407844		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000529218	ENST00000471668		ChiTaRS3.1			T06926	NELL1	chr11	21407852	-	MYT1L	chr2	1906950	-
intron-intron	ENST00000263881	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000263881	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000263881	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000263881	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000263881	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000263881	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000437545	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000341681	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000484274	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000536018	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000263881		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000437545		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000341681		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000484274		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000536018		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
intron-intron	ENST00000474502	ENST00000474502		ChiTaRS3.1			AI885076	MAP4K3	chr2	39583447	-	MAP4K3	chr2	39570529	+
3UTR-3UTR	ENST00000260653	ENST00000260653		ChiTaRS3.1			BQ188356	SIX3	chr2	45172101	-	SIX3	chr2	45172305	+
intron-intron	ENST00000583688	ENST00000583688		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-5UTR	ENST00000583688	ENST00000330889		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-5UTR	ENST00000583688	ENST00000580525		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
3UTR-intron	ENST00000330889	ENST00000583688		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
3UTR-5UTR	ENST00000330889	ENST00000330889		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
3UTR-5UTR	ENST00000330889	ENST00000580525		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-intron	ENST00000580525	ENST00000583688		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-5UTR	ENST00000580525	ENST00000330889		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-5UTR	ENST00000580525	ENST00000580525		ChiTaRS3.1			DA646406	ADAP2	chr17	29286199	+	ADAP2	chr17	29248965	+
intron-intron	ENST00000369093	ENST00000527132		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000396505		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000326932		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000525493		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369093	ENST00000450094		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000527132		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000396505		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000326932		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000525493		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000463089	ENST00000450094		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000527132		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000396505		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000326932		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000525493		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000369092	ENST00000450094		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000527132		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000396505		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000326932		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000525493		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
intron-intron	ENST00000436547	ENST00000450094		ChiTaRS3.1			AI057596	TIAL1	chr10	121335242	+	DKK3	chr11	12023982	-
3UTR-3UTR	ENST00000370283	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370283	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370283	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370283	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000547204	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000547204	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000547204	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519604	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519604	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519604	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519273	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000519273	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000519273	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370275	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-intron	ENST00000370275	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
3UTR-3UTR	ENST00000370275	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000353546	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000353546	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000353546	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000370283		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000518794	ENST00000547204		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-intron	ENST00000518794	ENST00000519604		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000519273		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000370275		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000353546		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3UTR	ENST00000518794	ENST00000518794		ChiTaRS3.1			AA454556	ARFGAP1	chr20	61921078	+	ARFGAP1	chr20	61919533	+
intron-3CDS	ENST00000504387	ENST00000504387		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000504387	ENST00000379446		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000504387	ENST00000379433		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000504387	ENST00000508800		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000379446	ENST00000504387		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000379446	ENST00000379446		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000379446	ENST00000379433		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000379446	ENST00000508800		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000379433	ENST00000504387		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000379433	ENST00000379446		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000379433	ENST00000379433		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000379433	ENST00000508800		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000508800	ENST00000504387		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000508800	ENST00000379446		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000508800	ENST00000379433		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-intron	ENST00000508800	ENST00000508800		ChiTaRS3.1			BM968296	NEDD9	chr6	11185449	+	NEDD9	chr6	11185400	-
intron-3CDS	ENST00000314888	ENST00000314888		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-3CDS	ENST00000314888	ENST00000540444		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-intron	ENST00000314888	ENST00000464379		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-3CDS	ENST00000540444	ENST00000314888		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-3CDS	ENST00000540444	ENST00000540444		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-intron	ENST00000540444	ENST00000464379		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-3CDS	ENST00000464379	ENST00000314888		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-3CDS	ENST00000464379	ENST00000540444		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-intron	ENST00000464379	ENST00000464379		ChiTaRS3.1			BI116596	TLN1	chr9	35700362	+	TLN1	chr9	35700308	-
intron-intron	ENST00000536525	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000536525	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000536525	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000536525	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000536525	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000536525	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000397909	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000228327	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000266692	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000552300	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000536525		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000397909		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000228327		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000266692		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000552300		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-intron	ENST00000541270	ENST00000541270		ChiTaRS3.1			AW898446	NAV3	chr12	78515330	-	NAV3	chr12	78515010	+
intron-3CDS	ENST00000367455	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367455	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000367454	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367454	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000367451	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367451	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000367448	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367448	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000367449	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367449	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000367452	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000367452	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000530098	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000530098	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-3CDS	ENST00000483156	ENST00000335968		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
intron-intron	ENST00000483156	ENST00000559492		ChiTaRS3.1			BE067206	UCHL5	chr1	192981972	+	TARSL2	chr15	102211765	-
3UTR-3UTR	ENST00000260653	ENST00000260653		ChiTaRS3.1			CK299836	SIX3	chr2	45172305	-	SIX3	chr2	45172101	+
5CDS-3UTR	ENST00000339976	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000339976	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000339976	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000004980	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000004980	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000004980	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000448372	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000448372	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000448372	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000551330	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000551330	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000551330	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549518	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549518	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549518	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549595	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549595	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5CDS-3UTR	ENST00000549595	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5UTR-3UTR	ENST00000547886	ENST00000462832		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5UTR-3UTR	ENST00000547886	ENST00000379579		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
5UTR-3UTR	ENST00000547886	ENST00000334056		ChiTaRS3.1			BI462236	SENP1	chr12	48490119	-	SPDYA	chr2	29041912	+
intron-intron	ENST00000408742	ENST00000408742		ChiTaRS3.1			Z24856	MIR548N	chr2	179417481	+	MIR548N	chr2	179417547	-
intron-5UTR	ENST00000406775	ENST00000393957		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000406775	ENST00000564104		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000406775	ENST00000290942		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000406775	ENST00000562206		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000342771	ENST00000393957		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000342771	ENST00000564104		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000342771	ENST00000290942		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000342771	ENST00000562206		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000403018	ENST00000393957		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000403018	ENST00000564104		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000403018	ENST00000290942		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000403018	ENST00000562206		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000489774	ENST00000393957		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000489774	ENST00000564104		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000489774	ENST00000290942		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
intron-5UTR	ENST00000489774	ENST00000562206		ChiTaRS3.1			BF995986	AUTS2	chr7	69197004	-	TPPP3	chr16	67425017	-
5CDS-5UTR	ENST00000395412	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000395412	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000395412	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395412	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000395412	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000345990	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000345990	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000345990	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000345990	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000345990	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000395411	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000395411	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000395411	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000395411	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000395411	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000511130	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000511130	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000511130	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000511130	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-3UTR	ENST00000511130	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000512718	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000512718	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000512718	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000512718	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000512718	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000521364	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000521364	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000521364	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000521364	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000521364	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000510842	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000510842	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000510842	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000510842	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000510842	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000361991	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000361991	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000361991	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000361991	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000361991	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000360683	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000360683	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-5UTR	ENST00000360683	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-intron	ENST00000360683	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
5CDS-3UTR	ENST00000360683	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000508708	ENST00000395412		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000508708	ENST00000345990		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000508708	ENST00000395411		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000511130		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000512718		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000521364		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000510842		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000361991		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-intron	ENST00000508708	ENST00000360683		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-3UTR	ENST00000508708	ENST00000508708		ChiTaRS3.1			AW582006	CSNK1G3	chr5	122893258	+	CSNK1G3	chr5	122881109	+
intron-5UTR	ENST00000377795	ENST00000487099		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000377795	ENST00000373584		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000377795	ENST00000416460		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000377795	ENST00000344523		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000353334	ENST00000487099		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000353334	ENST00000373584		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000353334	ENST00000416460		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000353334	ENST00000344523		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000524315	ENST00000487099		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000524315	ENST00000373584		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000524315	ENST00000416460		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000524315	ENST00000344523		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000009530	ENST00000487099		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000009530	ENST00000373584		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000009530	ENST00000416460		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
intron-5UTR	ENST00000009530	ENST00000344523		ChiTaRS3.1			U64876	CD74	chr5	149792319	+	NR6A1	chr9	127533473	-
In-frame	ENST00000332149	ENST00000539068		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000332149	ENST00000536438		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000332149	ENST00000357266		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000332149	ENST00000540787		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000332149	ENST00000542713		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000539068		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000536438		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
In-frame	ENST00000398585	ENST00000357266		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000398585	ENST00000540787		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000398585	ENST00000542713		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000539068		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000536438		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
Frame-shit	ENST00000458356	ENST00000357266		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000458356	ENST00000540787		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
5CDS-5UTR	ENST00000458356	ENST00000542713		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000539068		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000536438		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3CDS	ENST00000497881	ENST00000357266		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-5UTR	ENST00000497881	ENST00000540787		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-5UTR	ENST00000497881	ENST00000542713		ChiTaRS3.1			HM245389	TMPRSS2	chr21	42866283	-	FKBP5	chr6	35565187	-
intron-3UTR	ENST00000351293	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000351293	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000351293	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000351293	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322635	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000322635	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000322635	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000394762	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000394762	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000394762	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000423381	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000423381	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000423381	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000322680	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000322680	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000322680	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000305762	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000305762	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000305762	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000372765	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000372765	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000372765	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000472912	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000472912	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000472912	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000351293		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000322635		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000394762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000423381		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000322680		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000305762		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000444854	ENST00000372765		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-5UTR	ENST00000444854	ENST00000472912		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-intron	ENST00000444854	ENST00000444854		ChiTaRS3.1			BU676896	CAMK2G	chr10	75574094	+	CAMK2G	chr10	75574202	-
intron-3UTR	ENST00000367498	ENST00000254799		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000367498	ENST00000439371		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367498	ENST00000502323		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367498	ENST00000545193		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367498	ENST00000508091		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000459929	ENST00000254799		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000459929	ENST00000439371		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000459929	ENST00000502323		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000459929	ENST00000545193		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000459929	ENST00000508091		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000392007	ENST00000254799		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000392007	ENST00000439371		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000392007	ENST00000502323		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000392007	ENST00000545193		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000392007	ENST00000508091		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000367497	ENST00000254799		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000367497	ENST00000439371		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367497	ENST00000502323		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367497	ENST00000545193		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-intron	ENST00000367497	ENST00000508091		ChiTaRS3.1			BE173356	IVNS1ABP	chr1	185266657	-	GRSF1	chr4	71685543	+
intron-3UTR	ENST00000392882	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000392882	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000392882	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000392882	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000392882	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000392882	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000392882	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000358655	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000358655	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000355338	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000355338	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000344102	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000344102	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000557135	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000557135	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000556645	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000556645	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000392882		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000358655		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000355338		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000344102		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000557135		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-3UTR	ENST00000554084	ENST00000556645		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000554084	ENST00000554084		ChiTaRS3.1			AW796806	WARS	chr14	100801004	+	WARS	chr14	100800943	-
intron-intron	ENST00000412050	ENST00000412050		ChiTaRS3.1			DW465696	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000412050	ENST00000265997		ChiTaRS3.1			DW465696	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000265997	ENST00000412050		ChiTaRS3.1			DW465696	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-intron	ENST00000265997	ENST00000265997		ChiTaRS3.1			DW465696	CPEB3	chr10	93987193	-	CPEB3	chr10	93988264	-
intron-3UTR	ENST00000260630	ENST00000260630		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000260630	ENST00000494864		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000260630	ENST00000407341		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-3UTR	ENST00000494864	ENST00000260630		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000494864	ENST00000494864		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000494864	ENST00000407341		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-3UTR	ENST00000407341	ENST00000260630		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000407341	ENST00000494864		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-intron	ENST00000407341	ENST00000407341		ChiTaRS3.1			AA358226	CYP1B1	chr2	38295677	+	CYP1B1	chr2	38295189	+
intron-5UTR	ENST00000264235	ENST00000322347		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000264235	ENST00000562233		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000264235	ENST00000567270		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000264235	ENST00000568783		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000264235	ENST00000568517		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000264235	ENST00000564811		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000316626	ENST00000322347		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000316626	ENST00000562233		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000316626	ENST00000567270		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000316626	ENST00000568783		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000316626	ENST00000568517		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000316626	ENST00000564811		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000473886	ENST00000322347		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000473886	ENST00000562233		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000473886	ENST00000567270		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000473886	ENST00000568783		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000473886	ENST00000568517		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-intron	ENST00000473886	ENST00000564811		ChiTaRS3.1			BE538296	GSK3B	chr3	119543372	-	COX5A	chr15	75230407	-
intron-5UTR	ENST00000395184	ENST00000395184		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000395184	ENST00000503995		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395184	ENST00000506421		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395184	ENST00000395183		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395184	ENST00000264343		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000503995	ENST00000395184		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000503995	ENST00000503995		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000503995	ENST00000506421		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000503995	ENST00000395183		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000503995	ENST00000264343		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000506421	ENST00000395184		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000506421	ENST00000503995		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000506421	ENST00000506421		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000506421	ENST00000395183		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000506421	ENST00000264343		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000395183	ENST00000395184		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000395183	ENST00000503995		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395183	ENST00000506421		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395183	ENST00000395183		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000395183	ENST00000264343		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000264343	ENST00000395184		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-5UTR	ENST00000264343	ENST00000503995		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000264343	ENST00000506421		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000264343	ENST00000395183		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-intron	ENST00000264343	ENST00000264343		ChiTaRS3.1			AK130576	ARHGAP24	chr4	86646342	+	ARHGAP24	chr4	86396528	+
intron-3UTR	ENST00000267485	ENST00000368096		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-3UTR	ENST00000267485	ENST00000368097		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-intron	ENST00000267485	ENST00000478033		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-intron	ENST00000267485	ENST00000320307		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-3UTR	ENST00000334342	ENST00000368096		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-3UTR	ENST00000334342	ENST00000368097		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-intron	ENST00000334342	ENST00000478033		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-intron	ENST00000334342	ENST00000320307		ChiTaRS3.1			AI859366	C14orf37	chr14	58701294	-	TAGLN2	chr1	159888131	+
intron-intron	ENST00000376300	ENST00000259371		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000376300	ENST00000408936		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000376300	ENST00000309989		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000376300	ENST00000487716		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000319432	ENST00000259371		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000319432	ENST00000408936		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000319432	ENST00000309989		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000319432	ENST00000487716		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000460781	ENST00000259371		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000460781	ENST00000408936		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000460781	ENST00000309989		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-intron	ENST00000460781	ENST00000487716		ChiTaRS3.1			BF370686	CCDC93	chr2	118737147	+	DAB2IP	chr9	124539632	-
intron-3UTR	ENST00000388901	ENST00000388901		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000388901	ENST00000299259		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000388901	ENST00000542928		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000299259	ENST00000388901		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000299259	ENST00000299259		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000299259	ENST00000542928		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000542928	ENST00000388901		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000542928	ENST00000299259		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000542928	ENST00000542928		ChiTaRS3.1			BM721536	COPS2	chr15	49419925	+	COPS2	chr15	49419888	-
intron-3UTR	ENST00000318698	ENST00000533895		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000424158		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000532779		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000399066		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000446070		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000528331		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000276646		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000528647		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000440310		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000433638		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000408908		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000408889		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000422135		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000419099		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000533065		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000318698	ENST00000533171		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000318698	ENST00000529175		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000318698	ENST00000529690		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000318698	ENST00000527707		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000533895		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000424158		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000532779		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000399066		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000446070		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000528331		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000276646		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000528647		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000440310		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000433638		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000408908		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000408889		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000422135		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000419099		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000533065		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000566473	ENST00000533171		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000566473	ENST00000529175		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000566473	ENST00000529690		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000566473	ENST00000527707		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000533895		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000424158		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000532779		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000399066		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000446070		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000528331		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000276646		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000528647		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000440310		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000433638		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000408908		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000408889		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000422135		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000419099		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000533065		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000574292	ENST00000533171		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-3UTR	ENST00000574292	ENST00000529175		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000574292	ENST00000529690		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
intron-intron	ENST00000574292	ENST00000527707		ChiTaRS3.1			T06066	ANKFN1	chr17	54259959	+	SYBU	chr8	110586879	+
Frame-shit	ENST00000376741	ENST00000376741		ChiTaRS3.1			BE162526	SP2	chr17	45994496	+	SP2	chr17	45992675	+
intron-3UTR	ENST00000415807	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000415807	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000415807	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000415807	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000336824	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000336824	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000336824	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000336824	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000416957	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000416957	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000416957	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000416957	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000392699	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000392699	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000392699	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000392699	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000421757	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000421757	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000421757	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000421757	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000423424	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000423424	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000423424	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000423424	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000476794	ENST00000580974		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000476794	ENST00000299954		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000476794	ENST00000335257		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-3UTR	ENST00000476794	ENST00000581322		ChiTaRS3.1			AW752536	FNDC3B	chr3	171887768	+	PITPNC1	chr17	65688763	+
intron-intron	ENST00000341861	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000341861	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000358939	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000358939	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000300141	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000300141	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000321147	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000321147	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000321118	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000321118	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000339244	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000339244	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000559233	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000559233	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000560048	ENST00000198801		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000560048	ENST00000526712		ChiTaRS3.1			AW810166	DPP8	chr15	65801425	-	MOGAT2	chr11	75439550	-
intron-intron	ENST00000600335	ENST00000600335		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000600335	ENST00000334213		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000600335	ENST00000485451		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000334213	ENST00000600335		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000334213	ENST00000334213		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000334213	ENST00000485451		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000485451	ENST00000600335		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000485451	ENST00000334213		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000485451	ENST00000485451		ChiTaRS3.1			AX721266	ZNF20	chr19	12253775	+	ZNF20	chr19	12253746	-
intron-intron	ENST00000462446	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000462446	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000304311	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000416153	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000547450	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
5CDS-intron	ENST00000546848	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000548730	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000462446		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000304311		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000416153		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000547450		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000546848		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000548730		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000547331	ENST00000547331		ChiTaRS3.1			AI674906	DPCR1	chr6	2214327	-	DPCR1	chr6	2212815	+
intron-intron	ENST00000301067	ENST00000446906		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000377072		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000307729		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000377059		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000495130		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000377100		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000301067	ENST00000377091		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000446906		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000377072		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000307729		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000377059		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000495130		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000377100		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-intron	ENST00000549743	ENST00000377091		ChiTaRS3.1			AW379456	KMT2D	chr12	49443557	+	MLLT10	chr10	21940694	+
intron-3CDS	ENST00000307751	ENST00000368395		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000338684		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000438413		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000457295		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000462215		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368392		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368393		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368390		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368396		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000343256		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368398		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000368389		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000342482		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000307751	ENST00000337604		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-3CDS	ENST00000597803	ENST00000368395		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000338684		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000438413		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000457295		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000462215		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368392		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368393		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368390		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368396		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000343256		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368398		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000368389		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000342482		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
intron-intron	ENST00000597803	ENST00000337604		ChiTaRS3.1			AW391726	LGALS4	chr19	39293186	+	MUC1	chr1	155161943	+
In-frame	ENST00000163416	ENST00000355710		ChiTaRS3.1			X15786	GOLGA5	chr14	93282767	+	RET	chr10	43612030	+
In-frame	ENST00000163416	ENST00000340058		ChiTaRS3.1			X15786	GOLGA5	chr14	93282767	+	RET	chr10	43612030	+
In-frame	ENST00000355976	ENST00000355710		ChiTaRS3.1			X15786	GOLGA5	chr14	93282767	+	RET	chr10	43612030	+
In-frame	ENST00000355976	ENST00000340058		ChiTaRS3.1			X15786	GOLGA5	chr14	93282767	+	RET	chr10	43612030	+
5UTR-intron	ENST00000569418	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000569418	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000569418	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000569418	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000540145	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000540145	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000540145	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000540145	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000311559	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000311559	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000311559	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000311559	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000564326	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000564326	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000564326	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000564326	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000566206	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000566206	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000566206	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000566206	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000398568	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000398568	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000398568	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000398568	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000427738	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000427738	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000427738	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
5UTR-intron	ENST00000427738	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000568704	ENST00000436909		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000568704	ENST00000561678		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000568704	ENST00000357464		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-intron	ENST00000568704	ENST00000573002		ChiTaRS3.1			DA414506	CYLD	chr16	50776752	+	PAPD5	chr16	50249976	+
intron-3UTR	ENST00000290776	ENST00000256637		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000290776	ENST00000538502		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000290776	ENST00000482236		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-3UTR	ENST00000537605	ENST00000256637		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000537605	ENST00000538502		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000537605	ENST00000482236		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-3UTR	ENST00000535318	ENST00000256637		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000535318	ENST00000538502		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000535318	ENST00000482236		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-3UTR	ENST00000565874	ENST00000256637		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000565874	ENST00000538502		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000565874	ENST00000482236		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-3UTR	ENST00000565951	ENST00000256637		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000565951	ENST00000538502		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-intron	ENST00000565951	ENST00000482236		ChiTaRS3.1			BE831726	CPNE2	chr16	57178338	-	SORT1	chr1	109853100	+
intron-3UTR	ENST00000481038	ENST00000295633		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-intron	ENST00000481038	ENST00000424703		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-intron	ENST00000481038	ENST00000485968		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-3UTR	ENST00000379019	ENST00000295633		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-intron	ENST00000379019	ENST00000424703		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-intron	ENST00000379019	ENST00000485968		ChiTaRS3.1			AW889516	GPCPD1	chr20	5542846	-	FSTL1	chr3	120113901	+
intron-intron	ENST00000379300	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379300	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379300	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379300	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379300	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379300	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000356436	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000379307	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000343141	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607658	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000379300		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000356436		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000379307		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000343141		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000607658		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-intron	ENST00000607532	ENST00000607532		ChiTaRS3.1			BE002346	TBC1D7	chr6	13327139	+	TBC1D7	chr1	159327959	-
intron-3UTR	ENST00000399537	ENST00000399537		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-3UTR	ENST00000399537	ENST00000430969		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-intron	ENST00000399537	ENST00000399434		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-3UTR	ENST00000430969	ENST00000399537		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-3UTR	ENST00000430969	ENST00000430969		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-intron	ENST00000430969	ENST00000399434		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-3UTR	ENST00000399434	ENST00000399537		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-3UTR	ENST00000399434	ENST00000430969		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-intron	ENST00000399434	ENST00000399434		ChiTaRS3.1			BG696996	TNRC18	chr7	5346807	+	TNRC18	chr7	5346711	-
intron-intron	ENST00000604900	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000604900	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000604900	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000604900	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000604900	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000604900	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000604900	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000604900	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000604900	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000412716	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000412716	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000412716	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000412716	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000412716	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000412716	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000412716	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000412716	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000412716	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000449723	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000449723	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000449723	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000449723	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000449723	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-5UTR	ENST00000449723	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000449723	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000449723	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
3UTR-intron	ENST00000449723	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549555	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549555	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549555	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549555	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549555	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549555	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549555	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549555	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549555	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000439799	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000439799	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000439799	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000439799	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000439799	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000439799	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000439799	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000439799	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000439799	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000425012	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000425012	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000425012	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000425012	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000425012	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000425012	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000425012	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000425012	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000425012	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549732	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549732	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549732	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549732	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549732	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000549732	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549732	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549732	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000549732	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551534	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551534	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551534	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551534	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551534	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551534	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551534	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551534	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551534	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551313	ENST00000604900		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551313	ENST00000412716		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551313	ENST00000449723		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551313	ENST00000549555		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551313	ENST00000439799		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-5UTR	ENST00000551313	ENST00000425012		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551313	ENST00000549732		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551313	ENST00000551534		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-intron	ENST00000551313	ENST00000551313		ChiTaRS3.1			W22826	DAZAP2	chr12	51636836	-	DAZAP2	chr12	51632618	+
intron-3UTR	ENST00000429277	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000429277	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000429277	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000429277	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000429277	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000352360	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000352360	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000352360	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000352360	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000352360	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000458213	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000458213	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000458213	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000458213	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000458213	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000263066	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000263066	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000263066	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000263066	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000263066	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000361373	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000361373	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000361373	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000361373	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000361373	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000372066	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000372066	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372066	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372066	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372066	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000372056	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000372056	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372056	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372056	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000372056	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000310944	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000310944	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000310944	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000310944	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000310944	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000542786	ENST00000264071		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-3UTR	ENST00000542786	ENST00000540257		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000542786	ENST00000601152		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000542786	ENST00000598006		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000542786	ENST00000596926		ChiTaRS3.1			BF946266	LDB3	chr10	88458259	-	TUBB4A	chr19	6495154	+
intron-intron	ENST00000258534	ENST00000258534		ChiTaRS3.1			AF461896	DRAM1	chr12	102301246	+	DRAM1	chr12	102291242	+
intron-intron	ENST00000258534	ENST00000544152		ChiTaRS3.1			AF461896	DRAM1	chr12	102301246	+	DRAM1	chr12	102291242	+
intron-intron	ENST00000544152	ENST00000258534		ChiTaRS3.1			AF461896	DRAM1	chr12	102301246	+	DRAM1	chr12	102291242	+
intron-intron	ENST00000544152	ENST00000544152		ChiTaRS3.1			AF461896	DRAM1	chr12	102301246	+	DRAM1	chr12	102291242	+
intron-3UTR	ENST00000535458	ENST00000593829		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000535458	ENST00000252816		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
3UTR-3UTR	ENST00000290158	ENST00000593829		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
3UTR-3UTR	ENST00000290158	ENST00000252816		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000540627	ENST00000593829		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000540627	ENST00000252816		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000537679	ENST00000593829		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000537679	ENST00000252816		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000577918	ENST00000593829		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000577918	ENST00000252816		ChiTaRS3.1			AI110736	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
5CDS-3UTR	ENST00000244745	ENST00000409682		ChiTaRS3.1			BF590156	SOX4	chr6	21595892	+	PSMD14	chr2	162268139	-
5CDS-3UTR	ENST00000543472	ENST00000409682		ChiTaRS3.1			BF590156	SOX4	chr6	21595892	+	PSMD14	chr2	162268139	-
5CDS-5UTR	ENST00000273130	ENST00000412849		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000401392		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000264159		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
5CDS-5UTR	ENST00000273130	ENST00000536680		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000412849		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000401392		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000264159		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-5UTR	ENST00000432458	ENST00000536680		ChiTaRS3.1			BC064616	DYNC1LI1	chr3	32587345	-	ZRANB3	chr2	135988208	-
intron-intron	ENST00000607334	ENST00000413834		ChiTaRS3.1			AA639666	DLEU2	chr13	50662817	+	ATP5J2-PTCD1	chr7	99055814	+
intron-intron	ENST00000607334	ENST00000437572		ChiTaRS3.1			AA639666	DLEU2	chr13	50662817	+	ATP5J2-PTCD1	chr7	99055814	+
intron-3CDS	ENST00000260643	ENST00000260643		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000260643	ENST00000406567		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000260643	ENST00000416802		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000406567	ENST00000260643		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000406567	ENST00000406567		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000406567	ENST00000416802		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000416802	ENST00000260643		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-3CDS	ENST00000416802	ENST00000406567		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000416802	ENST00000416802		ChiTaRS3.1			AA467896	PREB	chr2	27355503	-	PREB	chr2	27356056	+
intron-5UTR	ENST00000535300	ENST00000535300		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000535300	ENST00000496055		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000535300	ENST00000319942		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000535300	ENST00000370826		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
3UTR-5UTR	ENST00000496055	ENST00000535300		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
3UTR-3UTR	ENST00000496055	ENST00000496055		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
3UTR-3UTR	ENST00000496055	ENST00000319942		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
3UTR-3UTR	ENST00000496055	ENST00000370826		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-5UTR	ENST00000319942	ENST00000535300		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000319942	ENST00000496055		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000319942	ENST00000319942		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000319942	ENST00000370826		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-5UTR	ENST00000370826	ENST00000535300		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000370826	ENST00000496055		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000370826	ENST00000319942		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
intron-3UTR	ENST00000370826	ENST00000370826		ChiTaRS3.1			CN264416	RABGGTB	chr1	76255614	-	RABGGTB	chr1	76255645	+
3UTR-3CDS	ENST00000261735	ENST00000371900		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
3UTR-intron	ENST00000261735	ENST00000463626		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
3UTR-3CDS	ENST00000455836	ENST00000371900		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
3UTR-intron	ENST00000455836	ENST00000463626		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
3UTR-3CDS	ENST00000546477	ENST00000371900		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
3UTR-intron	ENST00000546477	ENST00000463626		ChiTaRS3.1			CA312866	ERP29	chr12	112460680	-	SLC6A14	chrX	115577914	+
intron-intron	ENST00000414242	ENST00000414242		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-3UTR	ENST00000414242	ENST00000361479		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-intron	ENST00000414242	ENST00000496525		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
3UTR-intron	ENST00000361479	ENST00000414242		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
3UTR-3UTR	ENST00000361479	ENST00000361479		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
3UTR-intron	ENST00000361479	ENST00000496525		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-intron	ENST00000496525	ENST00000414242		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-3UTR	ENST00000496525	ENST00000361479		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-intron	ENST00000496525	ENST00000496525		ChiTaRS3.1			BM674866	MPHOSPH8	chr13	20246503	-	MPHOSPH8	chr13	20246954	-
intron-3UTR	ENST00000326799	ENST00000267484		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000326799	ENST00000395090		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000326799	ENST00000342503		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-intron	ENST00000326799	ENST00000557422		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000376016	ENST00000267484		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000376016	ENST00000395090		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000376016	ENST00000342503		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-intron	ENST00000376016	ENST00000557422		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000375972	ENST00000267484		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000375972	ENST00000395090		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000375972	ENST00000342503		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-intron	ENST00000375972	ENST00000557422		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000463270	ENST00000267484		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000463270	ENST00000395090		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000463270	ENST00000342503		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-intron	ENST00000463270	ENST00000557422		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000477432	ENST00000267484		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000477432	ENST00000395090		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-3UTR	ENST00000477432	ENST00000342503		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
intron-intron	ENST00000477432	ENST00000557422		ChiTaRS3.1			BM510146	YME1L1	chr10	27443300	+	RTN1	chr14	60063356	-
5CDS-5UTR	ENST00000325954	ENST00000538177		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000537216		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000537624		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000286749		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000537703		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000394573		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000325954	ENST00000338602		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000538177		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000537216		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000537624		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000286749		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000537703		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000394573		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
5CDS-5UTR	ENST00000413266	ENST00000338602		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000538177		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000537216		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000537624		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000286749		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000537703		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000394573		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-5UTR	ENST00000542701	ENST00000338602		ChiTaRS3.1			U62966	RNF10	chr12	120995399	-	SLC28A1	chr15	85427909	+
intron-3CDS	ENST00000382582	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000382582	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000382582	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000355994	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000355994	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000355994	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397875	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397875	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397875	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397866	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397866	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397866	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397865	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397865	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397865	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000527041	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000527041	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000527041	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000359645	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000359645	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000359645	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000528160	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000528160	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000528160	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397869	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397869	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397869	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000354542	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000354542	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000354542	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000526111	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000526111	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000526111	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000580402	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000580402	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000580402	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000579129	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000579129	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000579129	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000578193	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000578193	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000578193	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397863	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397863	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397863	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397860	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000397860	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000397860	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000487778	ENST00000340482		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-3CDS	ENST00000487778	ENST00000225275		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000487778	ENST00000578493		ChiTaRS3.1			BF900196	MBP	chr18	74726241	+	MPO	chr17	56350987	-
intron-intron	ENST00000461263	ENST00000461263		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000461263	ENST00000315758		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000461263	ENST00000443006		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000461263	ENST00000490105		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000461263	ENST00000432020		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000315758	ENST00000461263		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000315758	ENST00000315758		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000315758	ENST00000443006		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000315758	ENST00000490105		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000315758	ENST00000432020		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000443006	ENST00000461263		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000443006	ENST00000315758		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000443006	ENST00000443006		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000443006	ENST00000490105		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000443006	ENST00000432020		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000490105	ENST00000461263		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000490105	ENST00000315758		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000490105	ENST00000443006		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000490105	ENST00000490105		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000490105	ENST00000432020		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000432020	ENST00000461263		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000432020	ENST00000315758		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000432020	ENST00000443006		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000432020	ENST00000490105		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-intron	ENST00000432020	ENST00000432020		ChiTaRS3.1			BF794536	MDH2	chr7	75695601	-	MDH2	chr7	75695658	+
intron-3UTR	ENST00000398148	ENST00000233813		ChiTaRS3.1			AA628946	KHSRP	chr19	6414351	+	IGFBP5	chr2	217541404	+
3UTR-intron	ENST00000288561	ENST00000528080		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
3UTR-intron	ENST00000288561	ENST00000527813		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
3UTR-intron	ENST00000288561	ENST00000533723		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
3UTR-intron	ENST00000473989	ENST00000528080		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
3UTR-intron	ENST00000473989	ENST00000527813		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
3UTR-intron	ENST00000473989	ENST00000533723		ChiTaRS3.1			AW377636	UBN2	chr7	138987534	-	TMEM41B	chr11	9311599	-
intron-intron	ENST00000407228	ENST00000261349		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000407228	ENST00000543091		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000407228	ENST00000540415		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000261349		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000543091		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000540415		ChiTaRS3.1			BE067646	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
3UTR-3UTR	ENST00000246069	ENST00000246069		ChiTaRS3.1			CN411146	DSTN	chr20	17588076	-	DSTN	chr20	17588124	+
3UTR-3UTR	ENST00000246069	ENST00000474024		ChiTaRS3.1			CN411146	DSTN	chr20	17588076	-	DSTN	chr20	17588124	+
3UTR-3UTR	ENST00000474024	ENST00000246069		ChiTaRS3.1			CN411146	DSTN	chr20	17588076	-	DSTN	chr20	17588124	+
3UTR-3UTR	ENST00000474024	ENST00000474024		ChiTaRS3.1			CN411146	DSTN	chr20	17588076	-	DSTN	chr20	17588124	+
5CDS-5UTR	ENST00000321153	ENST00000335295		ChiTaRS3.1			AA367796	RPLP2	chr11	812574	-	HBB	chr11	5248258	-
3UTR-5UTR	ENST00000532004	ENST00000335295		ChiTaRS3.1			AA367796	RPLP2	chr11	812574	-	HBB	chr11	5248258	-
5CDS-5UTR	ENST00000530797	ENST00000335295		ChiTaRS3.1			AA367796	RPLP2	chr11	812574	-	HBB	chr11	5248258	-
3UTR-3UTR	ENST00000261769	ENST00000261769		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
3UTR-intron	ENST00000261769	ENST00000422392		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
3UTR-intron	ENST00000261769	ENST00000562836		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-3UTR	ENST00000422392	ENST00000261769		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-intron	ENST00000422392	ENST00000422392		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-intron	ENST00000422392	ENST00000562836		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-3UTR	ENST00000562836	ENST00000261769		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-intron	ENST00000562836	ENST00000422392		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
intron-intron	ENST00000562836	ENST00000562836		ChiTaRS3.1			AW843356	CDH1	chr16	68868970	+	CDH1	chr16	68868933	-
3UTR-3UTR	ENST00000261590	ENST00000261590		ChiTaRS3.1			AW600916	DSG2	chr18	29127669	-	DSG2	chr18	29128247	-
3UTR-intron	ENST00000261590	ENST00000585206		ChiTaRS3.1			AW600916	DSG2	chr18	29127669	-	DSG2	chr18	29128247	-
intron-3UTR	ENST00000585206	ENST00000261590		ChiTaRS3.1			AW600916	DSG2	chr18	29127669	-	DSG2	chr18	29128247	-
intron-intron	ENST00000585206	ENST00000585206		ChiTaRS3.1			AW600916	DSG2	chr18	29127669	-	DSG2	chr18	29128247	-
intron-3CDS	ENST00000316509	ENST00000535648		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000346706		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000340094		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000345230		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000350763		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000341037		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000423613		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000537320		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000316509	ENST00000542877		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-intron	ENST00000316509	ENST00000481475		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000535648		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000346706		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000340094		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000345230		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000350763		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000341037		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000423613		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000537320		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000404970	ENST00000542877		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-intron	ENST00000404970	ENST00000481475		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000535648		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000346706		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000340094		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000345230		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000350763		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000341037		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000423613		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000537320		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000488857	ENST00000542877		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-intron	ENST00000488857	ENST00000481475		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000535648		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000346706		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000340094		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000345230		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000350763		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000341037		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000423613		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000537320		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-3CDS	ENST00000481878	ENST00000542877		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
intron-intron	ENST00000481878	ENST00000481475		ChiTaRS3.1			BE771726	VAMP2	chr17	8064504	-	TNC	chr9	117838801	-
3UTR-3CDS	ENST00000417689	ENST00000417689		ChiTaRS3.1			CN478636	CES2	chr16	66978857	-	CES2	chr16	66977905	+
3UTR-3CDS	ENST00000417689	ENST00000317091		ChiTaRS3.1			CN478636	CES2	chr16	66978857	-	CES2	chr16	66977905	+
3UTR-3CDS	ENST00000317091	ENST00000417689		ChiTaRS3.1			CN478636	CES2	chr16	66978857	-	CES2	chr16	66977905	+
3UTR-3CDS	ENST00000317091	ENST00000317091		ChiTaRS3.1			CN478636	CES2	chr16	66978857	-	CES2	chr16	66977905	+
Frame-shit	ENST00000358232	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000358232	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000358232	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000351393	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000351393	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000351393	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000442325	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000442325	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000442325	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000423854	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000423854	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000423854	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000350494	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000350494	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000350494	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000542824	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000542824	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
Frame-shit	ENST00000542824	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
intron-3CDS	ENST00000542050	ENST00000382031		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
intron-3CDS	ENST00000542050	ENST00000399453		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
intron-3CDS	ENST00000542050	ENST00000300231		ChiTaRS3.1			BE700126	ELP2	chr18	33718253	-	MAP1A	chr15	43818492	-
intron-3UTR	ENST00000544865	ENST00000228799		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000544865	ENST00000419778		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000544865	ENST00000542548		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-intron	ENST00000544865	ENST00000545509		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000263073	ENST00000228799		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000263073	ENST00000419778		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000263073	ENST00000542548		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-intron	ENST00000263073	ENST00000545509		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000354901	ENST00000228799		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000354901	ENST00000419778		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000354901	ENST00000542548		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-intron	ENST00000354901	ENST00000545509		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000536871	ENST00000228799		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000536871	ENST00000419778		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000536871	ENST00000542548		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-intron	ENST00000536871	ENST00000545509		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000573166	ENST00000228799		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000573166	ENST00000419778		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-3UTR	ENST00000573166	ENST00000542548		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
intron-intron	ENST00000573166	ENST00000545509		ChiTaRS3.1			BE837736	SMG6	chr17	2115998	+	ITFG2	chr12	2933402	+
5CDS-3UTR	ENST00000334976	ENST00000273590		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
5CDS-intron	ENST00000334976	ENST00000493381		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
5CDS-3UTR	ENST00000376918	ENST00000273590		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
5CDS-intron	ENST00000376918	ENST00000493381		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
5CDS-3UTR	ENST00000598585	ENST00000273590		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
5CDS-intron	ENST00000598585	ENST00000493381		ChiTaRS3.1			BG661036	EMC10	chr19	50982270	-	TCTA	chr3	49453383	-
intron-intron	ENST00000337147	ENST00000314067		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000337147	ENST00000238628		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-3UTR	ENST00000337147	ENST00000556742		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000337147	ENST00000553338		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000367075	ENST00000314067		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000367075	ENST00000238628		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-3UTR	ENST00000367075	ENST00000556742		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000367075	ENST00000553338		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000392177	ENST00000314067		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000392177	ENST00000238628		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-3UTR	ENST00000392177	ENST00000556742		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000392177	ENST00000553338		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000476189	ENST00000314067		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000476189	ENST00000238628		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-3UTR	ENST00000476189	ENST00000556742		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-intron	ENST00000476189	ENST00000553338		ChiTaRS3.1			BE090566	EZR	chr6	159228665	+	IFT43	chr14	76525237	+
intron-3CDS	ENST00000342669	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000585392	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000587367	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000588599	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000391932	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000588301	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000590212	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000587579	ENST00000358901		ChiTaRS3.1			BE336906	SNRPD2	chr19	46195195	+	VCP	chr9	35061616	-
intron-3CDS	ENST00000536769	ENST00000536769		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536769	ENST00000538617		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536769	ENST00000546120		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536769	ENST00000339647		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-intron	ENST00000536769	ENST00000536661		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000538617	ENST00000536769		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000538617	ENST00000538617		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000538617	ENST00000546120		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000538617	ENST00000339647		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-intron	ENST00000538617	ENST00000536661		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000546120	ENST00000536769		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000546120	ENST00000538617		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000546120	ENST00000546120		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000546120	ENST00000339647		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-intron	ENST00000546120	ENST00000536661		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000339647	ENST00000536769		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000339647	ENST00000538617		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000339647	ENST00000546120		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000339647	ENST00000339647		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-intron	ENST00000339647	ENST00000536661		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536661	ENST00000536769		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536661	ENST00000538617		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536661	ENST00000546120		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-3CDS	ENST00000536661	ENST00000339647		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
intron-intron	ENST00000536661	ENST00000536661		ChiTaRS3.1			BG924526	UBC	chr12	125397961	+	UBC	chr12	125396418	-
3UTR-3UTR	ENST00000356948	ENST00000534336		ChiTaRS3.1			AI005156	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000350092	ENST00000534336		ChiTaRS3.1			AI005156	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000349038	ENST00000534336		ChiTaRS3.1			AI005156	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
3UTR-3UTR	ENST00000394601	ENST00000534336		ChiTaRS3.1			AI005156	PTBP1	chr19	811111	-	MALAT1	chr11	65268068	-
intron-intron	ENST00000512055	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000512055	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000512055	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000429747	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000429747	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000429747	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000512332	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000512332	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000512332	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000511604	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000511604	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000511604	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000502818	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000502818	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000502818	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000503204	ENST00000527985		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3UTR	ENST00000503204	ENST00000287169		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-intron	ENST00000503204	ENST00000527090		ChiTaRS3.1			BQ638056	CPNE4	chr3	131763733	-	ZDHHC5	chr11	57468536	-
intron-3CDS	ENST00000299138	ENST00000299138		ChiTaRS3.1			BQ225946	VPS35	chr16	46706276	+	VPS35	chr16	46706246	-
intron-intron	ENST00000299138	ENST00000568642		ChiTaRS3.1			BQ225946	VPS35	chr16	46706276	+	VPS35	chr16	46706246	-
intron-3CDS	ENST00000568642	ENST00000299138		ChiTaRS3.1			BQ225946	VPS35	chr16	46706276	+	VPS35	chr16	46706246	-
intron-intron	ENST00000568642	ENST00000568642		ChiTaRS3.1			BQ225946	VPS35	chr16	46706276	+	VPS35	chr16	46706246	-
intron-intron	ENST00000436008	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000436008	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000436008	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000436008	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000436008	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000436008	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000406686	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380302	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000490273	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000380298	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000436008		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000406686		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000380302		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000490273		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000380298		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
intron-intron	ENST00000433689	ENST00000433689		ChiTaRS3.1			BE159486	SLC22A23	chr6	3293475	+	SLC22A23	chr6	3293829	-
5UTR-intron	ENST00000584667	ENST00000536005		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000299694		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000561796		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000564819		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000563075		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000536005		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000299694		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000561796		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000564819		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000563075		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000536005		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000299694		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000561796		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000564819		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000563075		ChiTaRS3.1			CD624676	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-3CDS	ENST00000423245	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000423245	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000423245	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000423245	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000423245	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000423245	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000317905	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000317905	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000317905	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000317905	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000317905	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000317905	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000420326	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000420326	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000420326	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000420326	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000420326	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000420326	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000340830	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000340830	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000340830	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000340830	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000340830	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000340830	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000584999	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000584999	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000584999	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000584999	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000584999	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000584999	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000443199	ENST00000423245		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-3CDS	ENST00000443199	ENST00000317905		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000443199	ENST00000420326		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000443199	ENST00000340830		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-intron	ENST00000443199	ENST00000584999		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
intron-5UTR	ENST00000443199	ENST00000443199		ChiTaRS3.1			BQ316256	RECQL5	chr17	73658858	+	RECQL5	chr17	73625833	+
5CDS-intron	ENST00000371217	ENST00000535225		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371217	ENST00000358657		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371217	ENST00000453097		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371217	ENST00000394856		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371217	ENST00000514353		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371217	ENST00000546663		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000535225		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000358657		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000453097		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000394856		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000514353		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000265993	ENST00000546663		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000535225		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000358657		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000453097		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000394856		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000514353		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000430368	ENST00000546663		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000535225		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000358657		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000453097		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000394856		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000514353		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
5CDS-intron	ENST00000371209	ENST00000546663		ChiTaRS3.1			BE065656	TCTN3	chr10	97446799	-	SLC4A8	chr12	51903097	-
3UTR-3CDS	ENST00000360612	ENST00000360612		ChiTaRS3.1			BU180116	PIM3	chr22	50357199	+	PIM3	chr22	50354843	+
intron-intron	ENST00000594624	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594624	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000594688	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000457234	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593491	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000597203	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000599276	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000593740	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000594624		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000594688		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000457234		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000593491		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000597203		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000599276		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000593740		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-intron	ENST00000596116	ENST00000596116		ChiTaRS3.1			AV686116	LIPE-AS1	chr19	42905003	+	LIPE-AS1	chr19	42902882	+
intron-3UTR	ENST00000336665	ENST00000448662		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000336665	ENST00000431808		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000336665	ENST00000284776		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000437304		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000319471		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000449407		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000355634		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000393528		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000336665	ENST00000418609		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000336665	ENST00000498125		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000304032	ENST00000448662		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000304032	ENST00000431808		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000304032	ENST00000284776		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000437304		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000319471		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000449407		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000355634		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000393528		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000304032	ENST00000418609		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000304032	ENST00000498125		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409538	ENST00000448662		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409538	ENST00000431808		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409538	ENST00000284776		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000437304		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000319471		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000449407		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000355634		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000393528		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409538	ENST00000418609		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409538	ENST00000498125		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000428334	ENST00000448662		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000428334	ENST00000431808		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000428334	ENST00000284776		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000437304		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000319471		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000449407		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000355634		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000393528		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000428334	ENST00000418609		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000428334	ENST00000498125		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409457	ENST00000448662		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409457	ENST00000431808		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409457	ENST00000284776		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000437304		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000319471		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000449407		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000355634		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000393528		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-3UTR	ENST00000409457	ENST00000418609		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000409457	ENST00000498125		ChiTaRS3.1			BE827936	AGAP1	chr2	236702727	+	SORBS2	chr4	186507136	-
intron-intron	ENST00000393446	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393446	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000265437	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000265437	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393451	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393451	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393449	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393449	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000323984	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000323984	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000432298	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000432298	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000422922	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000422922	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000487459	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000487459	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393443	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393443	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393447	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393447	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393444	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000393444	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000465133	ENST00000375377		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
intron-intron	ENST00000465133	ENST00000464386		ChiTaRS3.1			N41206	ST7	chr7	116793921	+	KIAA1462	chr10	30337491	-
3UTR-3UTR	ENST00000373715	ENST00000373715		ChiTaRS3.1			BF337666	SRSF3	chr6	36570900	-	SRSF3	chr6	36570964	+
3UTR-intron	ENST00000373715	ENST00000339436		ChiTaRS3.1			BF337666	SRSF3	chr6	36570900	-	SRSF3	chr6	36570964	+
intron-3UTR	ENST00000339436	ENST00000373715		ChiTaRS3.1			BF337666	SRSF3	chr6	36570900	-	SRSF3	chr6	36570964	+
intron-intron	ENST00000339436	ENST00000339436		ChiTaRS3.1			BF337666	SRSF3	chr6	36570900	-	SRSF3	chr6	36570964	+
Frame-shit	ENST00000542413	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000542413	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-3CDS	ENST00000600978	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000600978	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
Frame-shit	ENST00000598168	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000598168	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
Frame-shit	ENST00000411902	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000411902	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
Frame-shit	ENST00000253727	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000253727	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
Frame-shit	ENST00000599105	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000599105	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
Frame-shit	ENST00000593926	ENST00000542413		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000600978		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000598168		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000411902		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000253727		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000599105		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
5CDS-intron	ENST00000593926	ENST00000593926		ChiTaRS3.1			BM989946	NR1H2	chr19	50885340	-	NR1H2	chr19	50885265	+
intron-intron	ENST00000522706	ENST00000370314		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000522706	ENST00000535043		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000522706	ENST00000497894		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000262109	ENST00000370314		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000262109	ENST00000535043		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000262109	ENST00000497894		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000518277	ENST00000370314		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000518277	ENST00000535043		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-intron	ENST00000518277	ENST00000497894		ChiTaRS3.1			BI043226	ERICH1	chr8	617409	+	GABRA3	chrX	151361826	-
intron-3UTR	ENST00000346178	ENST00000346178		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000346178	ENST00000356638		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000346178	ENST00000534779		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000346178	ENST00000540933		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000346178	ENST00000534422		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000356638	ENST00000346178		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000356638	ENST00000356638		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000356638	ENST00000534779		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000356638	ENST00000540933		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000356638	ENST00000534422		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000534779	ENST00000346178		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000534779	ENST00000356638		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534779	ENST00000534779		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534779	ENST00000540933		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534779	ENST00000534422		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000540933	ENST00000346178		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000540933	ENST00000356638		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000540933	ENST00000534779		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000540933	ENST00000540933		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000540933	ENST00000534422		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000534422	ENST00000346178		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-3UTR	ENST00000534422	ENST00000356638		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534422	ENST00000534779		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534422	ENST00000540933		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000534422	ENST00000534422		ChiTaRS3.1			AA557976	GANAB	chr11	62392736	-	GANAB	chr11	62392841	+
intron-intron	ENST00000538348	ENST00000252211		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000538348	ENST00000341464		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000538348	ENST00000377255		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000451195	ENST00000252211		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000451195	ENST00000341464		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000451195	ENST00000377255		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000304177	ENST00000252211		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000304177	ENST00000341464		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000304177	ENST00000377255		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000513601	ENST00000252211		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000513601	ENST00000341464		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000513601	ENST00000377255		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000565712	ENST00000252211		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000565712	ENST00000341464		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-3UTR	ENST00000565712	ENST00000377255		ChiTaRS3.1			BI334606	C15orf40	chr15	83678995	-	ZKSCAN3	chr6	28336020	+
intron-intron	ENST00000298248	ENST00000355044		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000298248	ENST00000423111		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000298248	ENST00000303745		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000298248	ENST00000529665		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000298248	ENST00000527407		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000382812	ENST00000355044		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000382812	ENST00000423111		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000382812	ENST00000303745		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000382812	ENST00000529665		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000382812	ENST00000527407		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000480748	ENST00000355044		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000480748	ENST00000423111		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000480748	ENST00000303745		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000480748	ENST00000529665		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000480748	ENST00000527407		ChiTaRS3.1			BE069946	CRYL1	chr13	20978257	-	ATRNL1	chr10	117503329	+
intron-intron	ENST00000533076	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000533076	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000531974	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000362021	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000354884	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000524928	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000533076		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000531974		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000362021		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000354884		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000524928		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
intron-intron	ENST00000529740	ENST00000529740		ChiTaRS3.1			AW851656	SLC39A13	chr11	47415526	-	SLC39A13	chr11	47429438	-
3UTR-3UTR	ENST00000351193	ENST00000351193		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-intron	ENST00000351193	ENST00000472947		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-3UTR	ENST00000351193	ENST00000460469		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-intron	ENST00000351193	ENST00000478160		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-3UTR	ENST00000472947	ENST00000351193		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-intron	ENST00000472947	ENST00000472947		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-3UTR	ENST00000472947	ENST00000460469		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-intron	ENST00000472947	ENST00000478160		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-3UTR	ENST00000460469	ENST00000351193		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-intron	ENST00000460469	ENST00000472947		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-3UTR	ENST00000460469	ENST00000460469		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
3UTR-intron	ENST00000460469	ENST00000478160		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-3UTR	ENST00000478160	ENST00000351193		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-intron	ENST00000478160	ENST00000472947		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-3UTR	ENST00000478160	ENST00000460469		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-intron	ENST00000478160	ENST00000478160		ChiTaRS3.1			BM903576	NMD3	chr3	160969494	-	NMD3	chr3	160969537	+
intron-intron	ENST00000490882	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000490882	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000490882	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000429972	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000429972	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000429972	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000295956	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000295956	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000295956	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000358537	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000358537	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000358537	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000357272	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000357272	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000357272	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000348383	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000348383	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000348383	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000493452	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000493452	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000493452	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000419752	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000419752	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000419752	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000484981	ENST00000433197		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000484981	ENST00000577567		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000484981	ENST00000606895		ChiTaRS3.1			BF370506	FLNB	chr3	58094525	-	ERN1	chr17	62138848	+
intron-intron	ENST00000435344	ENST00000435344		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-3UTR	ENST00000435344	ENST00000477737		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000435344	ENST00000451075		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000435344	ENST00000490947		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
3UTR-intron	ENST00000477737	ENST00000435344		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
3UTR-3UTR	ENST00000477737	ENST00000477737		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
3UTR-intron	ENST00000477737	ENST00000451075		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
3UTR-intron	ENST00000477737	ENST00000490947		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000451075	ENST00000435344		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-3UTR	ENST00000451075	ENST00000477737		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000451075	ENST00000451075		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000451075	ENST00000490947		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000490947	ENST00000435344		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-3UTR	ENST00000490947	ENST00000477737		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000490947	ENST00000451075		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
intron-intron	ENST00000490947	ENST00000490947		ChiTaRS3.1			BU607596	VWA3B	chr2	98929154	-	VWA3B	chr2	98929029	+
5CDS-5UTR	ENST00000427410	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000427410	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000427410	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000447388	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000447388	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000447388	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000425457	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000425457	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000425457	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000456393	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000456393	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000456393	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372654	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000372654	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372654	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372653	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000372653	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372653	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372652	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000372652	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372652	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372651	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000372651	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000372651	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000440226	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000440226	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000440226	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000308733	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-3UTR	ENST00000308733	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
5CDS-5UTR	ENST00000308733	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
intron-5UTR	ENST00000483091	ENST00000321153		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
intron-3UTR	ENST00000483091	ENST00000532004		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
intron-5UTR	ENST00000483091	ENST00000530797		ChiTaRS3.1			BP393246	NFYC	chr1	41235058	-	RPLP2	chr11	809991	+
intron-3UTR	ENST00000377411	ENST00000378892		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000377411	ENST00000277010		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000377411	ENST00000477726		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-5UTR	ENST00000377411	ENST00000461426		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000414642	ENST00000378892		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000414642	ENST00000277010		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000414642	ENST00000477726		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-5UTR	ENST00000414642	ENST00000461426		ChiTaRS3.1			CA945116	GPR157	chr1	9175286	-	SIGMAR1	chr9	34635583	-
intron-3UTR	ENST00000360507	ENST00000360507		ChiTaRS3.1			BF034466	CNPPD1	chr2	220036822	+	CNPPD1	chr2	220036891	-
intron-intron	ENST00000360507	ENST00000409789		ChiTaRS3.1			BF034466	CNPPD1	chr2	220036822	+	CNPPD1	chr2	220036891	-
intron-3UTR	ENST00000409789	ENST00000360507		ChiTaRS3.1			BF034466	CNPPD1	chr2	220036822	+	CNPPD1	chr2	220036891	-
intron-intron	ENST00000409789	ENST00000409789		ChiTaRS3.1			BF034466	CNPPD1	chr2	220036822	+	CNPPD1	chr2	220036891	-
3UTR-3UTR	ENST00000484427	ENST00000484427		ChiTaRS3.1			BF798616	DDX27	chr20	47842988	-	DDX27	chr20	47851537	-
3UTR-3UTR	ENST00000484427	ENST00000371764		ChiTaRS3.1			BF798616	DDX27	chr20	47842988	-	DDX27	chr20	47851537	-
5CDS-3UTR	ENST00000371764	ENST00000484427		ChiTaRS3.1			BF798616	DDX27	chr20	47842988	-	DDX27	chr20	47851537	-
5CDS-3UTR	ENST00000371764	ENST00000371764		ChiTaRS3.1			BF798616	DDX27	chr20	47842988	-	DDX27	chr20	47851537	-
5CDS-3UTR	ENST00000310118	ENST00000392329		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000310118	ENST00000322522		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000310118	ENST00000541441		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000310118	ENST00000417336		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000392329		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000322522		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000435761	ENST00000541441		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000435761	ENST00000417336		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000392329		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000322522		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-3UTR	ENST00000439383	ENST00000541441		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
5CDS-intron	ENST00000439383	ENST00000417336		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000392329		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000322522		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3UTR	ENST00000459910	ENST00000541441		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-intron	ENST00000459910	ENST00000417336		ChiTaRS3.1			BE720196	PSMD2	chr3	184021161	-	INPP1	chr2	191236210	-
intron-3CDS	ENST00000344034	ENST00000344034		ChiTaRS3.1			BE732236	PPM1G	chr2	27607714	-	PPM1G	chr2	27632267	-
intron-3CDS	ENST00000344034	ENST00000350803		ChiTaRS3.1			BE732236	PPM1G	chr2	27607714	-	PPM1G	chr2	27632267	-
intron-3CDS	ENST00000350803	ENST00000344034		ChiTaRS3.1			BE732236	PPM1G	chr2	27607714	-	PPM1G	chr2	27632267	-
intron-3CDS	ENST00000350803	ENST00000350803		ChiTaRS3.1			BE732236	PPM1G	chr2	27607714	-	PPM1G	chr2	27632267	-
intron-3UTR	ENST00000367142	ENST00000367142		ChiTaRS3.1			AL708476	NUCKS1	chr1	205686769	+	NUCKS1	chr1	205687159	-
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			AL708476	NUCKS1	chr1	205686769	+	NUCKS1	chr1	205687159	-
intron-3UTR	ENST00000464938	ENST00000367142		ChiTaRS3.1			AL708476	NUCKS1	chr1	205686769	+	NUCKS1	chr1	205687159	-
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			AL708476	NUCKS1	chr1	205686769	+	NUCKS1	chr1	205687159	-
3UTR-3CDS	ENST00000341307	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000341307	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3UTR	ENST00000341307	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000356000	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000356000	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3UTR	ENST00000356000	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000538995	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000538995	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3UTR	ENST00000538995	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000377819	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000377819	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3UTR	ENST00000377819	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000339997	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000339997	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3UTR	ENST00000339997	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000540798	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000540798	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3UTR	ENST00000540798	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000537981	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3CDS	ENST00000537981	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
3UTR-3UTR	ENST00000537981	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000354497	ENST00000296702		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3CDS	ENST00000354497	ENST00000394421		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-3UTR	ENST00000354497	ENST00000509787		ChiTaRS3.1			AA099776	RTN3	chr11	63527121	-	TCERG1	chr5	145882945	+
intron-intron	ENST00000529261	ENST00000529261		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000529261	ENST00000278353		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000529261	ENST00000395700		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000278353	ENST00000529261		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000278353	ENST00000278353		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000278353	ENST00000395700		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000395700	ENST00000529261		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000395700	ENST00000278353		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-intron	ENST00000395700	ENST00000395700		ChiTaRS3.1			CB218116	HSD17B12	chr11	43716753	+	HSD17B12	chr11	43714781	+
intron-3CDS	ENST00000319622	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000319622	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000319622	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000319622	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000565184	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565184	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565184	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565184	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000389093	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000389093	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000389093	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000389093	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000335181	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000335181	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000335181	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000335181	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000568883	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568883	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568883	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568883	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000449901	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000449901	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000449901	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000449901	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000565154	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565154	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565154	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000565154	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-3CDS	ENST00000568459	ENST00000373233		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568459	ENST00000309279		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568459	ENST00000373222		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000568459	ENST00000480022		ChiTaRS3.1			BF763536	PKM	chr15	72494962	+	CHD6	chr20	40081436	-
intron-intron	ENST00000375400	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000375400	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000375400	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000375398	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000375398	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000375398	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000355867	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000355867	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000355867	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000535393	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000535393	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000535393	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000460007	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000460007	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000460007	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000538146	ENST00000555545		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000538146	ENST00000261245		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000538146	ENST00000539616		ChiTaRS3.1			BF871006	SVIL	chr10	29992704	+	MNAT1	chr14	61386486	-
intron-intron	ENST00000496811	ENST00000496811		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000496811	ENST00000308361		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000496811	ENST00000544526		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000496811	ENST00000329463		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000308361	ENST00000496811		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000308361	ENST00000308361		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000308361	ENST00000544526		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000308361	ENST00000329463		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000544526	ENST00000496811		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000544526	ENST00000308361		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000544526	ENST00000544526		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000544526	ENST00000329463		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000329463	ENST00000496811		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000329463	ENST00000308361		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000329463	ENST00000544526		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-intron	ENST00000329463	ENST00000329463		ChiTaRS3.1			DN916446	DHX36	chr3	154021151	+	DHX36	chr3	154012461	+
intron-3UTR	ENST00000368655	ENST00000357037		ChiTaRS3.1			CB265526	GATAD2B	chr1	153871033	-	PTRF	chr17	40555735	-
intron-3CDS	ENST00000499762	ENST00000318602		ChiTaRS3.1			CB054346	A2M-AS1	chr12	9222377	+	A2M	chr12	9225024	-
intron-intron	ENST00000499762	ENST00000542567		ChiTaRS3.1			CB054346	A2M-AS1	chr12	9222377	+	A2M	chr12	9225024	-
intron-3CDS	ENST00000561734	ENST00000579662		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000561734	ENST00000339591		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000561734	ENST00000200181		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000561734	ENST00000450894		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000561734	ENST00000449880		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-intron	ENST00000561734	ENST00000584558		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000007264	ENST00000579662		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000007264	ENST00000339591		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000007264	ENST00000200181		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000007264	ENST00000450894		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000007264	ENST00000449880		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-intron	ENST00000007264	ENST00000584558		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000565809	ENST00000579662		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000565809	ENST00000339591		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000565809	ENST00000200181		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000565809	ENST00000450894		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000565809	ENST00000449880		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-intron	ENST00000565809	ENST00000584558		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000567114	ENST00000579662		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000567114	ENST00000339591		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000567114	ENST00000200181		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000567114	ENST00000450894		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000567114	ENST00000449880		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-intron	ENST00000567114	ENST00000584558		ChiTaRS3.1			BF798086	RPUSD1	chr16	836326	+	ITGB4	chr17	73750719	+
intron-3CDS	ENST00000476971	ENST00000358127		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-3CDS	ENST00000476971	ENST00000523241		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000520154		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000377852		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000377853		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000522003		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000520281		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000414447		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000523145		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000446742		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000476971	ENST00000377847		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-3CDS	ENST00000359237	ENST00000358127		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-3CDS	ENST00000359237	ENST00000523241		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000520154		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000377852		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000377853		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000522003		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000520281		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000414447		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000523145		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000446742		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000359237	ENST00000377847		ChiTaRS3.1			T12626	PLAC1	chrX	133742576	+	PAX5	chr9	36846928	-
intron-intron	ENST00000400485	ENST00000400485		ChiTaRS3.1			AU185866	MORC3	chr21	37711073	-	MORC3	chr21	37717005	-
intron-intron	ENST00000400485	ENST00000487909		ChiTaRS3.1			AU185866	MORC3	chr21	37711073	-	MORC3	chr21	37717005	-
intron-intron	ENST00000487909	ENST00000400485		ChiTaRS3.1			AU185866	MORC3	chr21	37711073	-	MORC3	chr21	37717005	-
intron-intron	ENST00000487909	ENST00000487909		ChiTaRS3.1			AU185866	MORC3	chr21	37711073	-	MORC3	chr21	37717005	-
intron-intron	ENST00000372891	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372891	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372894	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372892	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372889	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372887	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372882	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000477390	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000372886	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372891		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372894		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372892		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372889		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372887		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372882		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000477390		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000372886		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-intron	ENST00000349959	ENST00000349959		ChiTaRS3.1			AA603416	PKIG	chr20	43246030	+	PKIG	chr20	43245949	-
intron-3UTR	ENST00000263401	ENST00000263401		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000263401	ENST00000452374		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000263401	ENST00000532705		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000263401	ENST00000533308		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000452374	ENST00000263401		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000452374	ENST00000452374		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000452374	ENST00000532705		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000452374	ENST00000533308		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000532705	ENST00000263401		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000532705	ENST00000452374		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000532705	ENST00000532705		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000532705	ENST00000533308		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000533308	ENST00000263401		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-3UTR	ENST00000533308	ENST00000452374		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000533308	ENST00000532705		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
intron-intron	ENST00000533308	ENST00000533308		ChiTaRS3.1			BI772756	COMMD9	chr11	36296019	+	COMMD9	chr11	36295836	-
5CDS-intron	ENST00000535539	ENST00000505350		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535539	ENST00000457016		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535539	ENST00000257430		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535539	ENST00000508376		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000378438	ENST00000505350		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000378438	ENST00000457016		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000378438	ENST00000257430		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000378438	ENST00000508376		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000544975	ENST00000505350		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000544975	ENST00000457016		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000544975	ENST00000257430		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000544975	ENST00000508376		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
intron-intron	ENST00000486558	ENST00000505350		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
intron-intron	ENST00000486558	ENST00000457016		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
intron-intron	ENST00000486558	ENST00000257430		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
intron-intron	ENST00000486558	ENST00000508376		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535777	ENST00000505350		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535777	ENST00000457016		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535777	ENST00000257430		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
5CDS-intron	ENST00000535777	ENST00000508376		ChiTaRS3.1			BQ348746	ATP6AP2	chrX	40465006	-	APC	chr5	112178950	+
intron-3CDS	ENST00000555699	ENST00000555699		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000555699	ENST00000334869		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000555699	ENST00000557434		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000555699	ENST00000393218		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-intron	ENST00000555699	ENST00000557034		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000334869	ENST00000555699		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000334869	ENST00000334869		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000334869	ENST00000557434		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000334869	ENST00000393218		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-intron	ENST00000334869	ENST00000557034		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557434	ENST00000555699		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557434	ENST00000334869		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557434	ENST00000557434		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557434	ENST00000393218		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-intron	ENST00000557434	ENST00000557034		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000393218	ENST00000555699		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000393218	ENST00000334869		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000393218	ENST00000557434		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000393218	ENST00000393218		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-intron	ENST00000393218	ENST00000557034		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557034	ENST00000555699		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557034	ENST00000334869		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557034	ENST00000557434		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-3CDS	ENST00000557034	ENST00000393218		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
intron-intron	ENST00000557034	ENST00000557034		ChiTaRS3.1			AW753026	LGMN	chr14	93185212	+	LGMN	chr14	93182515	-
3UTR-5UTR	ENST00000415430	ENST00000531188		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000415430	ENST00000530164		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000278572		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000534440		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000527446		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000526608		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000524851		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000529285		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000531188		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000530164		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000278572		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000534440		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000527446		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000526608		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000524851		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000529285		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000531188		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000530164		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000278572		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000534440		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000527446		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000526608		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000524851		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000529285		ChiTaRS3.1			BQ084066	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-3UTR	ENST00000587708	ENST00000323851		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000587708	ENST00000354944		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-5UTR	ENST00000587708	ENST00000521414		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000587708	ENST00000537882		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000587708	ENST00000414097		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000587708	ENST00000518176		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000587708	ENST00000522476		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000587708	ENST00000518066		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000591949	ENST00000323851		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000591949	ENST00000354944		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-5UTR	ENST00000591949	ENST00000521414		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000591949	ENST00000537882		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000591949	ENST00000414097		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000591949	ENST00000518176		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000591949	ENST00000522476		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000591949	ENST00000518066		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000222266	ENST00000323851		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000222266	ENST00000354944		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-5UTR	ENST00000222266	ENST00000521414		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000222266	ENST00000537882		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-3UTR	ENST00000222266	ENST00000414097		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000222266	ENST00000518176		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000222266	ENST00000522476		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
3UTR-intron	ENST00000222266	ENST00000518066		ChiTaRS3.1			EC471676	PSENEN	chr19	36237834	-	NDRG1	chr8	134249491	-
Frame-shit	ENST00000220509	ENST00000220509		ChiTaRS3.1			BU155386	VPS18	chr15	41192633	-	VPS18	chr15	41192676	+
5CDS-intron	ENST00000220509	ENST00000558474		ChiTaRS3.1			BU155386	VPS18	chr15	41192633	-	VPS18	chr15	41192676	+
intron-3CDS	ENST00000558474	ENST00000220509		ChiTaRS3.1			BU155386	VPS18	chr15	41192633	-	VPS18	chr15	41192676	+
intron-intron	ENST00000558474	ENST00000558474		ChiTaRS3.1			BU155386	VPS18	chr15	41192633	-	VPS18	chr15	41192676	+
intron-intron	ENST00000367903	ENST00000367903		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000367903	ENST00000534288		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-3UTR	ENST00000367903	ENST00000313961		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000367903	ENST00000530507		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000367903	ENST00000527988		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000534288	ENST00000367903		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000534288	ENST00000534288		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-3UTR	ENST00000534288	ENST00000313961		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000534288	ENST00000530507		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000534288	ENST00000527988		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000313961	ENST00000367903		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000313961	ENST00000534288		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-3UTR	ENST00000313961	ENST00000313961		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000313961	ENST00000530507		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000313961	ENST00000527988		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000530507	ENST00000367903		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000530507	ENST00000534288		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-3UTR	ENST00000530507	ENST00000313961		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000530507	ENST00000530507		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000530507	ENST00000527988		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000527988	ENST00000367903		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000527988	ENST00000534288		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-3UTR	ENST00000527988	ENST00000313961		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000527988	ENST00000530507		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000527988	ENST00000527988		ChiTaRS3.1			BI491626	RGS5	chr1	163112435	+	RGS5	chr1	163112400	-
intron-intron	ENST00000437840	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000437840	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000437840	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000437840	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000497454	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000497454	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000497454	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000444031	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000444031	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000444031	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000494749	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000494749	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000494749	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000413136	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000413136	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000413136	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000549377	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000549377	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000549377	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000473419	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000473419	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000473419	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000452084	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000452084	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000452084	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000550374	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000550374	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000550374	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000480780	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000480780	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000480780	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000416548	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000416548	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000416548	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000548778	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000548778	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000548778	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000383204	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000383204	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000383204	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000487403	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000487403	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000487403	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000437840		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000497454		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000444031		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000494749		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000413136		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000549377		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000473419		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000452084		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000550374		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000480780		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000416548		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000548778		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000547127	ENST00000383204		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000547127	ENST00000487403		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-5UTR	ENST00000547127	ENST00000547127		ChiTaRS3.1			BE159416	RGL2	chr6	4492035	+	RGL2	chr6	4493308	-
intron-intron	ENST00000355329	ENST00000287272		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
intron-intron	ENST00000355329	ENST00000453357		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
intron-intron	ENST00000355329	ENST00000404895		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
intron-intron	ENST00000355329	ENST00000420357		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
intron-intron	ENST00000355329	ENST00000416672		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
intron-intron	ENST00000355329	ENST00000449677		ChiTaRS3.1			BF335516	MORN3	chr12	122093936	-	UNC5D	chr8	35350815	-
3UTR-intron	ENST00000418310	ENST00000418310		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000418310	ENST00000336180		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000418310	ENST00000538333		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000418310	ENST00000491052		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000336180	ENST00000418310		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000336180	ENST00000336180		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000336180	ENST00000538333		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
3UTR-intron	ENST00000336180	ENST00000491052		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000538333	ENST00000418310		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000538333	ENST00000336180		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000538333	ENST00000538333		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000538333	ENST00000491052		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000491052	ENST00000418310		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000491052	ENST00000336180		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000491052	ENST00000538333		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000491052	ENST00000491052		ChiTaRS3.1			AK125156	LIMK1	chr7	73536612	+	LIMK1	chr7	73531613	+
intron-intron	ENST00000272427	ENST00000396324		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000272427	ENST00000452625		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000272427	ENST00000576790		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000272427	ENST00000300036		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000272427	ENST00000573908		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000490919	ENST00000396324		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000490919	ENST00000452625		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000490919	ENST00000576790		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000490919	ENST00000300036		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000490919	ENST00000573908		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000410104	ENST00000396324		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000410104	ENST00000452625		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000410104	ENST00000576790		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000410104	ENST00000300036		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-intron	ENST00000410104	ENST00000573908		ChiTaRS3.1			BQ356246	EXOC6B	chr2	72607004	+	MYH11	chr16	15869615	+
intron-3UTR	ENST00000370836	ENST00000482954		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370836	ENST00000476279		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000247866		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370836	ENST00000461457		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370836	ENST00000465506		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370836	ENST00000464564		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000204307		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000460088		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000472695		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000476470		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000471136		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370836	ENST00000475276		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000482954		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000521489	ENST00000476279		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000247866		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000521489	ENST00000461457		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000521489	ENST00000465506		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000521489	ENST00000464564		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000204307		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000460088		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000472695		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000476470		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000471136		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000521489	ENST00000475276		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000482954		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370833	ENST00000476279		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000247866		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370833	ENST00000461457		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370833	ENST00000465506		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000370833	ENST00000464564		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000204307		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000460088		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000472695		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000476470		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000471136		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000370833	ENST00000475276		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000482954		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000406696	ENST00000476279		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000247866		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000406696	ENST00000461457		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000406696	ENST00000465506		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000406696	ENST00000464564		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000204307		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000460088		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000472695		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000476470		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000471136		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000406696	ENST00000475276		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000482954		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000602570	ENST00000476279		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000247866		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000602570	ENST00000461457		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000602570	ENST00000465506		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-intron	ENST00000602570	ENST00000464564		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000204307		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000460088		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000472695		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000476470		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000471136		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
intron-3UTR	ENST00000602570	ENST00000475276		ChiTaRS3.1			BE940466	HS6ST2	chrX	132040222	-	NDUFB2	chr7	140406408	-
Frame-shit	ENST00000341441	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000341441	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000341441	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000341441	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000341441	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000341441	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000341441	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000378576	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000378576	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000416162	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000416162	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000393187	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000393187	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000223215	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000223215	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000437945	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
Frame-shit	ENST00000437945	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000437945	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000437945	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000437945	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000437945	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
5CDS-intron	ENST00000437945	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000341441		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000378576		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000416162		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000393187		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000223215		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-3CDS	ENST00000462132	ENST00000437945		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
intron-intron	ENST00000462132	ENST00000462132		ChiTaRS3.1			DA568356	MEST	chr7	130144831	+	MEST	chr7	130135276	+
In-frame	ENST00000231572	ENST00000231572		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
In-frame	ENST00000231572	ENST00000538719		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
5CDS-intron	ENST00000231572	ENST00000520421		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-3CDS	ENST00000538719	ENST00000231572		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-3CDS	ENST00000538719	ENST00000538719		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-intron	ENST00000538719	ENST00000520421		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-3CDS	ENST00000520421	ENST00000231572		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-3CDS	ENST00000520421	ENST00000538719		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-intron	ENST00000520421	ENST00000520421		ChiTaRS3.1			BE714426	RARS	chr5	167920969	-	RARS	chr5	167929089	-
intron-3UTR	ENST00000454817	ENST00000540947		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000454817	ENST00000338718		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000454817	ENST00000541479		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000454817	ENST00000398354		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000454817	ENST00000326686		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000454817	ENST00000540579		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000454817	ENST00000535696		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000454817	ENST00000397205		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000540947		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000338718		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000541479		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000398354		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000326686		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000328333	ENST00000540579		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000328333	ENST00000535696		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000328333	ENST00000397205		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000540947		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000338718		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000541479		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000398354		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000326686		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000470076	ENST00000540579		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-intron	ENST00000470076	ENST00000535696		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000470076	ENST00000397205		ChiTaRS3.1			BU198036	COL7A1	chr3	48601644	+	CES4A	chr16	67043577	+
intron-3UTR	ENST00000430524	ENST00000355280		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-3UTR	ENST00000430524	ENST00000347992		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-intron	ENST00000430524	ENST00000453408		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-3UTR	ENST00000402752	ENST00000355280		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-3UTR	ENST00000402752	ENST00000347992		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-intron	ENST00000402752	ENST00000453408		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-3UTR	ENST00000331821	ENST00000355280		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-3UTR	ENST00000331821	ENST00000347992		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
5UTR-intron	ENST00000331821	ENST00000453408		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-3UTR	ENST00000467920	ENST00000355280		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-3UTR	ENST00000467920	ENST00000347992		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-intron	ENST00000467920	ENST00000453408		ChiTaRS3.1			BU536386	RANBP1	chr22	20105147	+	MINK1	chr17	4801130	+
intron-3CDS	ENST00000231061	ENST00000231061		ChiTaRS3.1			BX118986	SPARC	chr5	151047041	-	SPARC	chr5	151054197	-
intron-intron	ENST00000231061	ENST00000537849		ChiTaRS3.1			BX118986	SPARC	chr5	151047041	-	SPARC	chr5	151054197	-
intron-3CDS	ENST00000537849	ENST00000231061		ChiTaRS3.1			BX118986	SPARC	chr5	151047041	-	SPARC	chr5	151054197	-
intron-intron	ENST00000537849	ENST00000537849		ChiTaRS3.1			BX118986	SPARC	chr5	151047041	-	SPARC	chr5	151054197	-
intron-intron	ENST00000355831	ENST00000310961		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000355831	ENST00000370958		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000355831	ENST00000035383		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000355831	ENST00000415775		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000355831	ENST00000565615		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000343439	ENST00000310961		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000343439	ENST00000370958		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000343439	ENST00000035383		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000343439	ENST00000415775		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000343439	ENST00000565615		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392782	ENST00000310961		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392782	ENST00000370958		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392782	ENST00000035383		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392782	ENST00000415775		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392782	ENST00000565615		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392783	ENST00000310961		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392783	ENST00000370958		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392783	ENST00000035383		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392783	ENST00000415775		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000392783	ENST00000565615		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000483316	ENST00000310961		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000483316	ENST00000370958		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000483316	ENST00000035383		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000483316	ENST00000415775		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-intron	ENST00000483316	ENST00000565615		ChiTaRS3.1			AW798556	BAZ2B	chr2	160447669	-	LRRC7	chr1	70423899	-
intron-3UTR	ENST00000395938	ENST00000366787		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-intron	ENST00000395938	ENST00000488355		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-3UTR	ENST00000312280	ENST00000366787		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-intron	ENST00000312280	ENST00000488355		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-3UTR	ENST00000494511	ENST00000366787		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-intron	ENST00000494511	ENST00000488355		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-3UTR	ENST00000395936	ENST00000366787		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-intron	ENST00000395936	ENST00000488355		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-3UTR	ENST00000426385	ENST00000366787		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
intron-intron	ENST00000426385	ENST00000488355		ChiTaRS3.1			AW580806	PMP22	chr17	15133902	-	THBS2	chr6	169616519	-
5CDS-intron	ENST00000368738	ENST00000302536		ChiTaRS3.1			BF736986	S100A9	chr1	153333279	-	VAT1L	chr16	77987596	+
5CDS-intron	ENST00000368738	ENST00000563850		ChiTaRS3.1			BF736986	S100A9	chr1	153333279	-	VAT1L	chr16	77987596	+
intron-intron	ENST00000430275	ENST00000368679		ChiTaRS3.1			BF993676	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000368676		ChiTaRS3.1			BF993676	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-intron	ENST00000430275	ENST00000467145		ChiTaRS3.1			BF993676	FER1L4	chr20	34169968	-	ADAM12	chr10	127781364	-
intron-3CDS	ENST00000300150	ENST00000300150		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000300150	ENST00000337979		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000300150	ENST00000535361		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000300150	ENST00000437946		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000300150	ENST00000529177		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000337979	ENST00000300150		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000337979	ENST00000337979		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000337979	ENST00000535361		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000337979	ENST00000437946		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000337979	ENST00000529177		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000535361	ENST00000300150		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000535361	ENST00000337979		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000535361	ENST00000535361		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000535361	ENST00000437946		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000535361	ENST00000529177		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000437946	ENST00000300150		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000437946	ENST00000337979		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000437946	ENST00000535361		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000437946	ENST00000437946		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000437946	ENST00000529177		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000529177	ENST00000300150		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000529177	ENST00000337979		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-3CDS	ENST00000529177	ENST00000535361		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000529177	ENST00000437946		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000529177	ENST00000529177		ChiTaRS3.1			W28076	STX3	chr11	59554223	-	STX3	chr11	59554561	+
intron-intron	ENST00000530157	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000530157	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000525451	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000308162	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000527344	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531407	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000524553	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000534769	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000530157		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000525451		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000308162		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000527344		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000531407		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000524553		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000534769		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
intron-intron	ENST00000531413	ENST00000531413		ChiTaRS3.1			BI006566	CFL1	chr11	65623562	+	CFL1	chr11	65622890	+
Frame-shit	ENST00000262982	ENST00000262982		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000262982	ENST00000542325		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000262982	ENST00000396192		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
5CDS-3UTR	ENST00000262982	ENST00000469700		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000542325	ENST00000262982		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000542325	ENST00000542325		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000542325	ENST00000396192		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
5CDS-3UTR	ENST00000542325	ENST00000469700		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000396192	ENST00000262982		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000396192	ENST00000542325		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
Frame-shit	ENST00000396192	ENST00000396192		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
5CDS-3UTR	ENST00000396192	ENST00000469700		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
3UTR-3CDS	ENST00000469700	ENST00000262982		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
3UTR-3CDS	ENST00000469700	ENST00000542325		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
3UTR-3CDS	ENST00000469700	ENST00000396192		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
3UTR-3UTR	ENST00000469700	ENST00000469700		ChiTaRS3.1			BU579546	CSE1L	chr20	47711357	+	CSE1L	chr20	47712949	-
intron-3CDS	ENST00000216267	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000216267	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000216267	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000216267	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000216267	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000216267	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000216267	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404034	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404034	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404034	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404034	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404034	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404034	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000404034	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404760	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404760	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000404760	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404760	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404760	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000404760	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000404760	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000457780	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000457780	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000457780	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000457780	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000457780	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000457780	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000457780	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000542442	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000542442	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000542442	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000542442	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000542442	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000542442	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000542442	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000342989	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000342989	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000342989	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000342989	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000342989	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000342989	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000342989	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000459821	ENST00000216267		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000459821	ENST00000404034		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3CDS	ENST00000459821	ENST00000404760		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000459821	ENST00000457780		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000459821	ENST00000542442		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-3UTR	ENST00000459821	ENST00000342989		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
intron-intron	ENST00000459821	ENST00000459821		ChiTaRS3.1			AA116016	BRD1	chr22	50167949	-	BRD1	chr22	50169353	+
5CDS-intron	ENST00000292123	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000292123	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000292123	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000592224	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000592224	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000592224	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
intron-intron	ENST00000586934	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
intron-intron	ENST00000586934	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
intron-intron	ENST00000586934	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000454510	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000454510	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000454510	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000433404	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000433404	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000433404	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000588852	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000588852	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000588852	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000538656	ENST00000524189		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000538656	ENST00000521515		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
5CDS-intron	ENST00000538656	ENST00000404075		ChiTaRS3.1			BF513396	SAFB	chr19	5667464	+	KIF13B	chr8	29088956	+
intron-intron	ENST00000457424	ENST00000342362		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000382002		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000231423		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000513753		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000397391		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000348262		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000542609		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000310101		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000511486		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000457424	ENST00000509934		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000342362		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000382002		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000231423		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000513753		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000397391		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000348262		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000542609		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000310101		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000511486		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000426172	ENST00000509934		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000342362		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000382002		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000231423		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000513753		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000397391		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000348262		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000542609		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000310101		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000511486		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000503780	ENST00000509934		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000342362		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000382002		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000231423		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000513753		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000397391		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000348262		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000542609		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000310101		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000511486		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
intron-intron	ENST00000296519	ENST00000509934		ChiTaRS3.1			BG184506	CEP44	chr4	175223641	-	PRLR	chr5	35195131	+
3UTR-3CDS	ENST00000369085	ENST00000369085		ChiTaRS3.1			CA313066	BAG3	chr10	121437127	-	BAG3	chr10	121436769	+
intron-3UTR	ENST00000366911	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366911	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366911	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000320285	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000320285	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000320285	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000457520	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000457520	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000457520	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366908	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366908	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366908	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366906	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366906	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366906	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366905	ENST00000366911		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-3UTR	ENST00000366905	ENST00000320285		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000457520		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366908		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366906		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000366905	ENST00000366905		ChiTaRS3.1			BU947826	AGPAT4	chr6	161551334	-	AGPAT4	chr6	161551572	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BE704226	CDR1	chrX	139865335	-	CDR1	chrX	139866825	-
intron-intron	ENST00000379441	ENST00000348547		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000379441	ENST00000357394		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000379441	ENST00000279052		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000379441	ENST00000447986		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000379441	ENST00000482338		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000179765	ENST00000348547		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000179765	ENST00000357394		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000179765	ENST00000279052		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000179765	ENST00000447986		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000179765	ENST00000482338		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000551812	ENST00000348547		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000551812	ENST00000357394		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000551812	ENST00000279052		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000551812	ENST00000447986		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000551812	ENST00000482338		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000549884	ENST00000348547		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000549884	ENST00000357394		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000549884	ENST00000279052		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000549884	ENST00000447986		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000549884	ENST00000482338		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000553222	ENST00000348547		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000553222	ENST00000357394		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000553222	ENST00000279052		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000553222	ENST00000447986		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000553222	ENST00000482338		ChiTaRS3.1			AW380796	BAZ2A	chr12	56993542	+	ERGIC3	chr20	34130484	-
intron-intron	ENST00000371208	ENST00000371208		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000371208	ENST00000465876		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000371208	ENST00000395561		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000465876	ENST00000371208		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000465876	ENST00000465876		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000465876	ENST00000395561		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000395561	ENST00000371208		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000395561	ENST00000465876		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000395561	ENST00000395561		ChiTaRS3.1			AA491736	HOOK1	chr1	60336031	+	HOOK1	chr1	60335904	-
intron-intron	ENST00000216085	ENST00000216085		ChiTaRS3.1			BF913686	RHBDD3	chr22	29663443	+	RHBDD3	chr22	29659574	+
intron-intron	ENST00000390168	ENST00000475381		ChiTaRS3.1			AF116626	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000273512		ChiTaRS3.1			AF116626	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000538775		ChiTaRS3.1			AF116626	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000390168	ENST00000543711		ChiTaRS3.1			AF116626	H19	chr11	2018981	+	NCEH1	chr3	172361111	+
intron-intron	ENST00000595437	ENST00000337907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000595437	ENST00000377464		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000595437	ENST00000400907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000595437	ENST00000400908		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000595437	ENST00000476556		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000595437	ENST00000460659		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000337907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000377464		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000400907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000400908		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000476556		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376586	ENST00000460659		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000337907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000377464		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000400907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000400908		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000476556		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000319562	ENST00000460659		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000337907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000377464		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000400907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000400908		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000476556		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000376581	ENST00000460659		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000337907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000377464		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000400907		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000400908		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000476556		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000593990	ENST00000460659		ChiTaRS3.1			BE065916	FARP1	chr13	98915905	-	RERE	chr1	8722944	+
intron-intron	ENST00000263773	ENST00000353411		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000263773	ENST00000522552		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000263773	ENST00000521216		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000263773	ENST00000517625		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000263773	ENST00000522855		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000534003	ENST00000353411		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000534003	ENST00000522552		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000534003	ENST00000521216		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000534003	ENST00000517625		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000534003	ENST00000522855		ChiTaRS3.1			AI793256	FNBP4	chr11	47748796	+	SKP1	chr5	133510221	-
intron-intron	ENST00000370982	ENST00000370982		ChiTaRS3.1			BF857926	GNG12	chr1	68619301	-	GNG12	chr1	68659868	-
intron-intron	ENST00000370982	ENST00000494936		ChiTaRS3.1			BF857926	GNG12	chr1	68619301	-	GNG12	chr1	68659868	-
intron-intron	ENST00000494936	ENST00000370982		ChiTaRS3.1			BF857926	GNG12	chr1	68619301	-	GNG12	chr1	68659868	-
intron-intron	ENST00000494936	ENST00000494936		ChiTaRS3.1			BF857926	GNG12	chr1	68619301	-	GNG12	chr1	68659868	-
intron-3CDS	ENST00000396526	ENST00000242848		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000396526	ENST00000378921		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000396526	ENST00000282007		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-5UTR	ENST00000396526	ENST00000470308		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-3CDS	ENST00000396534	ENST00000242848		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000396534	ENST00000378921		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000396534	ENST00000282007		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-5UTR	ENST00000396534	ENST00000470308		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-3CDS	ENST00000362031	ENST00000242848		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000362031	ENST00000378921		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000362031	ENST00000282007		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-5UTR	ENST00000362031	ENST00000470308		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-3CDS	ENST00000355110	ENST00000242848		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000355110	ENST00000378921		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-intron	ENST00000355110	ENST00000282007		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-5UTR	ENST00000355110	ENST00000470308		ChiTaRS3.1			BQ028676	SNX6	chr14	35037953	+	ZC3H13	chr13	46577292	+
intron-3UTR	ENST00000373996	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000373996	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000373996	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000373996	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000313400	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000313400	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000313400	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000313400	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361209	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361209	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361209	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000361209	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361477	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361477	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000361477	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000361477	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000288520	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000288520	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000288520	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000288520	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000341734	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000341734	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000341734	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000341734	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000358637	ENST00000497081		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000358637	ENST00000395592		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-3UTR	ENST00000358637	ENST00000299610		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000358637	ENST00000574313		ChiTaRS3.1			BE044246	ASTN2	chr9	119942968	+	MFAP4	chr17	19287702	+
intron-intron	ENST00000300853	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000300853	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000300853	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000300853	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000423698	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000423698	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000423698	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000423698	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000588738	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000588738	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000588738	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000588738	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000340192	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000340192	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000340192	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000340192	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000591636	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000591636	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000591636	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000591636	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000589165	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000589165	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000589165	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000589165	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000013807	ENST00000443824		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000013807	ENST00000359276		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000013807	ENST00000380241		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-intron	ENST00000013807	ENST00000483053		ChiTaRS3.1			BE826026	ERCC1	chr19	45977981	-	CTPS2	chrX	16684855	+
intron-3CDS	ENST00000529631	ENST00000221801		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-intron	ENST00000529631	ENST00000593503		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-3CDS	ENST00000529191	ENST00000221801		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-intron	ENST00000529191	ENST00000593503		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-3CDS	ENST00000273550	ENST00000221801		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-intron	ENST00000273550	ENST00000593503		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-3CDS	ENST00000526640	ENST00000221801		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-intron	ENST00000526640	ENST00000593503		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-3CDS	ENST00000532601	ENST00000221801		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
intron-intron	ENST00000532601	ENST00000593503		ChiTaRS3.1			BQ230476	FTH1	chr11	61734943	-	FBL	chr19	40331286	-
5UTR-3UTR	ENST00000244745	ENST00000244745		ChiTaRS3.1			AW207656	SOX4	chr6	21594242	-	SOX4	chr6	21596676	-
5UTR-intron	ENST00000244745	ENST00000543472		ChiTaRS3.1			AW207656	SOX4	chr6	21594242	-	SOX4	chr6	21596676	-
5UTR-3UTR	ENST00000543472	ENST00000244745		ChiTaRS3.1			AW207656	SOX4	chr6	21594242	-	SOX4	chr6	21596676	-
5UTR-intron	ENST00000543472	ENST00000543472		ChiTaRS3.1			AW207656	SOX4	chr6	21594242	-	SOX4	chr6	21596676	-
5CDS-3UTR	ENST00000336615	ENST00000372134		ChiTaRS3.1			BI017246	PNPLA2	chr11	821832	-	GHITM	chr10	85912193	+
intron-3UTR	ENST00000265070	ENST00000287263		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-3UTR	ENST00000265070	ENST00000330843		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000265070	ENST00000522727		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000265070	ENST00000523182		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000265070	ENST00000524118		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-3UTR	ENST00000512668	ENST00000287263		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-3UTR	ENST00000512668	ENST00000330843		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000512668	ENST00000522727		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000512668	ENST00000523182		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-intron	ENST00000512668	ENST00000524118		ChiTaRS3.1			BU754126	GOLPH3	chr5	32171792	+	RAB11FIP1	chr8	37719409	+
intron-3CDS	ENST00000602540	ENST00000373823		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000373808		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000436847		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000449733		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000412819		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000394353		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000341272		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000545652		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000602540	ENST00000373818		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000602540	ENST00000485767		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000602540	ENST00000373807		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000602540	ENST00000373806		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000373823		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000373808		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000436847		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000449733		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000412819		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000394353		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000341272		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000545652		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-3CDS	ENST00000266671	ENST00000373818		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000266671	ENST00000485767		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000266671	ENST00000373807		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000266671	ENST00000373806		ChiTaRS3.1			BF149146	PHLDA1	chr12	76423792	+	GSN	chr9	124089677	+
intron-intron	ENST00000511725	ENST00000511725		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-3UTR	ENST00000511725	ENST00000253815		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-3UTR	ENST00000511725	ENST00000398733		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-intron	ENST00000511725	ENST00000505548		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-intron	ENST00000253815	ENST00000511725		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-3UTR	ENST00000253815	ENST00000253815		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-3UTR	ENST00000253815	ENST00000398733		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-intron	ENST00000253815	ENST00000505548		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-intron	ENST00000398733	ENST00000511725		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-3UTR	ENST00000398733	ENST00000253815		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-3UTR	ENST00000398733	ENST00000398733		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
3UTR-intron	ENST00000398733	ENST00000505548		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-intron	ENST00000505548	ENST00000511725		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-3UTR	ENST00000505548	ENST00000253815		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-3UTR	ENST00000505548	ENST00000398733		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-intron	ENST00000505548	ENST00000505548		ChiTaRS3.1			BU685296	UBE2D2	chr5	139006944	-	UBE2D2	chr5	139006769	+
intron-intron	ENST00000420696	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000420696	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000401534	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000559240	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000367897	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540236	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000560641	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000474046	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000485769	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000420696		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000401534		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000559240		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000367897		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000540236		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000560641		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000474046		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000485769		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000540246	ENST00000540246		ChiTaRS3.1			BG949786	PBX1	chr1	164580286	+	PBX1	chr1	164580072	-
intron-intron	ENST00000379562	ENST00000379562		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000535925		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000463666		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000379562	ENST00000543003		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000379562		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000535925		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000463666		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000535925	ENST00000543003		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000379562		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000535925		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000463666		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000463666	ENST00000543003		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000379562		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000535925		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000463666		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-intron	ENST00000543003	ENST00000543003		ChiTaRS3.1			CV376786	KIN	chr10	7822668	-	KIN	chr10	7827515	-
intron-3UTR	ENST00000336934	ENST00000375151		ChiTaRS3.1			AL711716	STARD13	chr13	34112629	-	TSR2	chrX	54471626	+
intron-3UTR	ENST00000255486	ENST00000375151		ChiTaRS3.1			AL711716	STARD13	chr13	34112629	-	TSR2	chrX	54471626	+
intron-3UTR	ENST00000399365	ENST00000375151		ChiTaRS3.1			AL711716	STARD13	chr13	34112629	-	TSR2	chrX	54471626	+
intron-3UTR	ENST00000487412	ENST00000375151		ChiTaRS3.1			AL711716	STARD13	chr13	34112629	-	TSR2	chrX	54471626	+
intron-3UTR	ENST00000439831	ENST00000375151		ChiTaRS3.1			AL711716	STARD13	chr13	34112629	-	TSR2	chrX	54471626	+
intron-3UTR	ENST00000396526	ENST00000344749		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000396526	ENST00000262965		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396526	ENST00000453954		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396526	ENST00000395423		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396526	ENST00000588136		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000396534	ENST00000344749		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000396534	ENST00000262965		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396534	ENST00000453954		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396534	ENST00000395423		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000396534	ENST00000588136		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000362031	ENST00000344749		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000362031	ENST00000262965		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000362031	ENST00000453954		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000362031	ENST00000395423		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000362031	ENST00000588136		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000355110	ENST00000344749		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-3UTR	ENST00000355110	ENST00000262965		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000355110	ENST00000453954		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000355110	ENST00000395423		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000355110	ENST00000588136		ChiTaRS3.1			BC009346	SNX6	chr14	35038343	+	TCF3	chr19	1611021	-
intron-intron	ENST00000430117	ENST00000301634		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000430117	ENST00000405273		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000430117	ENST00000588734		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000430117	ENST00000590862		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000430117	ENST00000590430		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000262059	ENST00000301634		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000262059	ENST00000405273		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000262059	ENST00000588734		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000262059	ENST00000590862		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000262059	ENST00000590430		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000548263	ENST00000301634		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000548263	ENST00000405273		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000548263	ENST00000588734		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000548263	ENST00000590862		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000548263	ENST00000590430		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000550804	ENST00000301634		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000550804	ENST00000405273		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000550804	ENST00000588734		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000550804	ENST00000590862		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000550804	ENST00000590430		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000547885	ENST00000301634		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000547885	ENST00000405273		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000547885	ENST00000588734		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000547885	ENST00000590862		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-intron	ENST00000547885	ENST00000590430		ChiTaRS3.1			AW376086	CALCOCO1	chr12	54105313	+	TK1	chr17	76176597	+
intron-3CDS	ENST00000390394	ENST00000254722		ChiTaRS3.1			N36796	TRBV20-1	chr16	2011758	-	SERPINF1	chr17	1678419	-
intron-intron	ENST00000390394	ENST00000571870		ChiTaRS3.1			N36796	TRBV20-1	chr16	2011758	-	SERPINF1	chr17	1678419	-
intron-3UTR	ENST00000329565	ENST00000429989		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-intron	ENST00000329565	ENST00000481124		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-3UTR	ENST00000329565	ENST00000372164		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-intron	ENST00000329565	ENST00000372158		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-intron	ENST00000329565	ENST00000341863		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-intron	ENST00000329565	ENST00000372156		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-3UTR	ENST00000329565	ENST00000265450		ChiTaRS3.1			AI982566	SNN	chr16	11773083	+	TSPAN14	chr10	82278422	-
intron-3CDS	ENST00000355666	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000355666	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000355666	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000355666	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000355666	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000355666	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399017	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399017	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399017	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000399017	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000399017	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000399017	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000354749	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000354749	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000354749	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000354749	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000354749	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000354749	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000479930	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000479930	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000479930	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000479930	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000479930	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000479930	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000540756	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000540756	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000540756	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000540756	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000540756	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000540756	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399010	ENST00000355666		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399010	ENST00000399017		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3CDS	ENST00000399010	ENST00000354749		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000399010	ENST00000479930		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000399010	ENST00000540756		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-intron	ENST00000399010	ENST00000399010		ChiTaRS3.1			CN350086	TTC3	chr21	38537854	-	TTC3	chr21	38529155	+
intron-3UTR	ENST00000524717	ENST00000399231		ChiTaRS3.1			AW895156	MAML2	chr11	95961389	+	MYO5A	chr15	52603214	+
intron-3UTR	ENST00000524717	ENST00000356338		ChiTaRS3.1			AW895156	MAML2	chr11	95961389	+	MYO5A	chr15	52603214	+
intron-3UTR	ENST00000524717	ENST00000358212		ChiTaRS3.1			AW895156	MAML2	chr11	95961389	+	MYO5A	chr15	52603214	+
intron-3UTR	ENST00000524717	ENST00000399233		ChiTaRS3.1			AW895156	MAML2	chr11	95961389	+	MYO5A	chr15	52603214	+
intron-intron	ENST00000524717	ENST00000553916		ChiTaRS3.1			AW895156	MAML2	chr11	95961389	+	MYO5A	chr15	52603214	+
intron-3CDS	ENST00000421515	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000421515	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000421515	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000421515	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000421515	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000421515	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000388759	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000443659	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000425478	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000437230	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000412028	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000415901	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000282120		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000377386		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000398263		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000409232		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000409015		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
intron-3CDS	ENST00000416026	ENST00000444342		ChiTaRS3.1			AI675786	NKIRAS1	chr3	23962037	-	TGOLN2	chr2	85554240	+
3UTR-3UTR	ENST00000372358	ENST00000372358		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372358	ENST00000546165		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372358	ENST00000372352		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372358	ENST00000372351		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372358	ENST00000467138		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000546165	ENST00000372358		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000546165	ENST00000546165		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000546165	ENST00000372352		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000546165	ENST00000372351		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000546165	ENST00000467138		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372352	ENST00000372358		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372352	ENST00000546165		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372352	ENST00000372352		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372352	ENST00000372351		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372352	ENST00000467138		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372351	ENST00000372358		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372351	ENST00000546165		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372351	ENST00000372352		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372351	ENST00000372351		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000372351	ENST00000467138		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000467138	ENST00000372358		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000467138	ENST00000546165		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000467138	ENST00000372352		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000467138	ENST00000372351		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
3UTR-3UTR	ENST00000467138	ENST00000467138		ChiTaRS3.1			BF155556	EXOSC2	chr9	133579337	+	EXOSC2	chr9	133579227	-
intron-3CDS	ENST00000421587	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000318588	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000361962	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000378163	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000378158	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000378166	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000442742	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000472704	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-3CDS	ENST00000378154	ENST00000342694		ChiTaRS3.1			L13436	CASK	chrX	41441441	+	NPR2	chr9	35792152	+
intron-intron	ENST00000391918	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000391918	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000391918	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000391918	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000391918	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000391918	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000391918	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000391918	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-intron	ENST00000291295	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-3UTR	ENST00000291295	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-intron	ENST00000291295	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-intron	ENST00000291295	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-intron	ENST00000291295	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-intron	ENST00000291295	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-3UTR	ENST00000291295	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
3UTR-3UTR	ENST00000291295	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000597743	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000597743	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000597743	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000597743	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000597743	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000597743	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000597743	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000597743	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000477244	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000477244	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000477244	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000477244	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000477244	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000477244	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000477244	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000477244	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000598871	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000598871	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000598871	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000598871	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000598871	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000598871	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000598871	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000598871	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000594523	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000594523	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000594523	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000594523	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000594523	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000594523	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000594523	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000594523	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000599839	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000599839	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000599839	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000599839	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000599839	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000599839	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000599839	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000599839	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000596362	ENST00000391918		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000596362	ENST00000291295		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000596362	ENST00000597743		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000596362	ENST00000477244		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000596362	ENST00000598871		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-intron	ENST00000596362	ENST00000594523		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000596362	ENST00000599839		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
intron-3UTR	ENST00000596362	ENST00000596362		ChiTaRS3.1			AK124456	CALM3	chr19	47113824	+	CALM3	chr19	47112612	+
5CDS-intron	ENST00000376729	ENST00000377376		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000376729	ENST00000340305		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000376729	ENST00000340381		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000376729	ENST00000510900		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000218056	ENST00000377376		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000218056	ENST00000340305		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000218056	ENST00000340381		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
5CDS-intron	ENST00000218056	ENST00000510900		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
intron-intron	ENST00000492715	ENST00000377376		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
intron-intron	ENST00000492715	ENST00000340305		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
intron-intron	ENST00000492715	ENST00000340381		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
intron-intron	ENST00000492715	ENST00000510900		ChiTaRS3.1			AA934896	WDR13	chrX	48463293	-	TMEM201	chr1	9667473	-
intron-3UTR	ENST00000357718	ENST00000282041		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-intron	ENST00000357718	ENST00000585906		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-3UTR	ENST00000602817	ENST00000282041		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-intron	ENST00000602817	ENST00000585906		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-3UTR	ENST00000344416	ENST00000282041		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-intron	ENST00000344416	ENST00000585906		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-3UTR	ENST00000456111	ENST00000282041		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
intron-intron	ENST00000456111	ENST00000585906		ChiTaRS3.1			L44366	ANXA8	chr10	47122392	+	EPG5	chr18	43429612	+
3UTR-intron	ENST00000360448	ENST00000360448		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000360448	ENST00000297239		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000360448	ENST00000367081		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000360448	ENST00000469735		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000297239	ENST00000360448		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000297239	ENST00000297239		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000297239	ENST00000367081		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000297239	ENST00000469735		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000367081	ENST00000360448		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000367081	ENST00000297239		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000367081	ENST00000367081		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-intron	ENST00000367081	ENST00000469735		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
intron-intron	ENST00000469735	ENST00000360448		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
intron-intron	ENST00000469735	ENST00000297239		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
intron-intron	ENST00000469735	ENST00000367081		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
intron-intron	ENST00000469735	ENST00000469735		ChiTaRS3.1			AA593226	SYTL3	chr6	159185858	+	SYTL3	chr6	159185903	-
3UTR-3UTR	ENST00000320394	ENST00000320394		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000564186		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000541926		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000433597		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000562762		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000564186	ENST00000320394		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000564186		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000541926		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000433597		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000562762		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000541926	ENST00000320394		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000564186		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000541926		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000433597		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000562762		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000433597	ENST00000320394		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000564186		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000541926		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000433597		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000562762		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000562762	ENST00000320394		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000564186		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000541926		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000433597		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000562762		ChiTaRS3.1			BU673976	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3CDS	ENST00000379453	ENST00000379453		ChiTaRS3.1			M76446	ADRA1D	chr20	4229089	+	ADRA1D	chr20	4229356	-
intron-intron	ENST00000401950	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000401950	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000401950	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000401950	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000401950	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000333027	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000333027	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000333027	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000333027	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000333027	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000323630	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000323630	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000323630	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000323630	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000323630	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000351488	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000351488	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000351488	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000351488	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000351488	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000406629	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000406629	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000406629	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000406629	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000406629	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000415511	ENST00000333229		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000415511	ENST00000342449		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000415511	ENST00000380800		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000415511	ENST00000341322		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-intron	ENST00000415511	ENST00000470108		ChiTaRS3.1			T05096	MTMR3	chr22	30304346	+	BRWD1	chr21	40560343	+
intron-3UTR	ENST00000383729	ENST00000404338		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
intron-intron	ENST00000383729	ENST00000598548		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
intron-3UTR	ENST00000343546	ENST00000404338		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
intron-intron	ENST00000343546	ENST00000598548		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
intron-3UTR	ENST00000609406	ENST00000404338		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
intron-intron	ENST00000609406	ENST00000598548		ChiTaRS3.1			BQ322556	P4HTM	chr3	49039435	+	ARHGAP35	chr19	47505025	-
3UTR-intron	ENST00000366639	ENST00000273920		ChiTaRS3.1			BC000236	TSNAX	chr1	231700892	+	ENOPH1	chr4	83368350	+
3UTR-intron	ENST00000366639	ENST00000509635		ChiTaRS3.1			BC000236	TSNAX	chr1	231700892	+	ENOPH1	chr4	83368350	+
intron-intron	ENST00000602825	ENST00000273920		ChiTaRS3.1			BC000236	TSNAX	chr1	231700892	+	ENOPH1	chr4	83368350	+
intron-intron	ENST00000602825	ENST00000509635		ChiTaRS3.1			BC000236	TSNAX	chr1	231700892	+	ENOPH1	chr4	83368350	+
intron-intron	ENST00000441037	ENST00000441037		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000441037	ENST00000421325		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000441037	ENST00000389298		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000421325	ENST00000441037		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000421325	ENST00000421325		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000421325	ENST00000389298		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000389298	ENST00000441037		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000389298	ENST00000421325		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
intron-intron	ENST00000389298	ENST00000389298		ChiTaRS3.1			CB857866	AGBL1	chr15	86843206	-	AGBL1	chr15	86855613	-
3UTR-3UTR	ENST00000392455	ENST00000392455		ChiTaRS3.1			BQ227076	CCDC50	chr3	191109695	-	CCDC50	chr3	191109712	+
3UTR-3UTR	ENST00000392455	ENST00000392456		ChiTaRS3.1			BQ227076	CCDC50	chr3	191109695	-	CCDC50	chr3	191109712	+
3UTR-3UTR	ENST00000392456	ENST00000392455		ChiTaRS3.1			BQ227076	CCDC50	chr3	191109695	-	CCDC50	chr3	191109712	+
3UTR-3UTR	ENST00000392456	ENST00000392456		ChiTaRS3.1			BQ227076	CCDC50	chr3	191109695	-	CCDC50	chr3	191109712	+
intron-intron	ENST00000562778	ENST00000337565		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000562778	ENST00000393253		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000562778	ENST00000357757		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000562778	ENST00000308659		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000562778	ENST00000393256		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000562778	ENST00000405953		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000337565		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000393253		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000357757		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000308659		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000393256		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000268607	ENST00000405953		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000337565		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000393253		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000357757		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000308659		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000393256		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000565788	ENST00000405953		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000337565		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000393253		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000357757		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000308659		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000393256		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
3UTR-intron	ENST00000534986	ENST00000405953		ChiTaRS3.1			BQ368756	MAP1LC3B	chr16	87437454	-	BCL2L11	chr2	111902373	-
intron-intron	ENST00000408742	ENST00000408742		ChiTaRS3.1			AA194306	MIR548N	chr2	179414774	-	MIR548N	chr2	179414087	+
intron-3CDS	ENST00000552551	ENST00000319622		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000565184		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000389093		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000335181		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000568883		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000449901		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000565154		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552551	ENST00000568459		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000319622		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000565184		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000389093		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000335181		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000568883		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000449901		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000565154		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000293308	ENST00000568459		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000319622		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000565184		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000389093		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000335181		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000568883		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000449901		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000565154		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000546897	ENST00000568459		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000319622		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000565184		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000389093		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000335181		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000568883		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000449901		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000565154		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000552150	ENST00000568459		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000319622		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000565184		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000389093		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000335181		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000568883		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000449901		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000565154		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-3CDS	ENST00000549198	ENST00000568459		ChiTaRS3.1			BC051346	KRT8	chr12	53343622	+	PKM	chr15	72499549	-
intron-intron	ENST00000531326	ENST00000531326		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-intron	ENST00000531326	ENST00000392597		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-3UTR	ENST00000531326	ENST00000351677		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-intron	ENST00000392597	ENST00000531326		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-intron	ENST00000392597	ENST00000392597		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-3UTR	ENST00000392597	ENST00000351677		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
3UTR-intron	ENST00000351677	ENST00000531326		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
3UTR-intron	ENST00000351677	ENST00000392597		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
3UTR-3UTR	ENST00000351677	ENST00000351677		ChiTaRS3.1			AW362486	PTPN11	chr12	112946157	+	PTPN11	chr12	112946325	-
intron-intron	ENST00000418107	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418107	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000418107	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000418107	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000416244	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000416244	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000416244	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000413617	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000413617	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000413617	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000395312	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000395312	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000395312	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552299	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000552299	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000552299	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548611	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548611	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548611	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548183	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548183	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548183	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000418759	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000418759	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000418759	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000424822	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000424822	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000424822	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000447454	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000447454	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000447454	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000440078	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000440078	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000440078	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000548290	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548290	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000548290	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547478	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000547478	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000547478	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000551481	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000551481	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000551481	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000456428	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000456428	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000456428	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000450897	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000450897	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000450897	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428864	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000428864	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000428864	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000383231	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000383231	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000383231	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549152	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000549152	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000549152	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000552389	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000552389	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000552389	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000546855	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000546855	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000546855	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000452407	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000452407	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000452407	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000428420	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000428420	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000428420	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000550052	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000550052	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000550052	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000549556	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000549556	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000549556	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000547313	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000547313	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000547313	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000439344	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000439344	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000439344	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000418107		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000416244		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000413617		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000395312		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000552299		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000548611		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000548183		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000418759		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000424822		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000447454		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000440078		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000548290		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000547478		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000551481		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000456428		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000450897		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000428864		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000383231		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000549152		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000552389		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000546855		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000452407		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000428420		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000550052		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000549556		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000412948	ENST00000547313		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000412948	ENST00000439344		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-5UTR	ENST00000412948	ENST00000412948		ChiTaRS3.1			AW404996	HLA-DMB	chr6	4333891	+	HLA-DMB	chr6	4339396	-
intron-intron	ENST00000434826	ENST00000602198		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-intron	ENST00000434826	ENST00000253435		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-3UTR	ENST00000434826	ENST00000601707		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-5UTR	ENST00000434826	ENST00000598265		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-intron	ENST00000508011	ENST00000602198		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-intron	ENST00000508011	ENST00000253435		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-3UTR	ENST00000508011	ENST00000601707		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
intron-5UTR	ENST00000508011	ENST00000598265		ChiTaRS3.1			AF353396	C4orf45	chr4	159942809	+	TEX101	chr19	43919083	+
5CDS-3UTR	ENST00000438607	ENST00000227507		ChiTaRS3.1			BE926376	TMA7	chr3	48482006	-	CCND1	chr11	69469228	-
5CDS-intron	ENST00000438607	ENST00000536559		ChiTaRS3.1			BE926376	TMA7	chr3	48482006	-	CCND1	chr11	69469228	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807756	UBE2V1	chr20	48710193	+	UBE2V1	chr20	48709820	+
intron-intron	ENST00000536719	ENST00000593699		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000536719	ENST00000372499		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000536719	ENST00000496424		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000251968	ENST00000593699		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000251968	ENST00000372499		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000251968	ENST00000496424		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000357193	ENST00000593699		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000357193	ENST00000372499		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000357193	ENST00000496424		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000543087	ENST00000593699		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000543087	ENST00000372499		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
intron-intron	ENST00000543087	ENST00000496424		ChiTaRS3.1			BE708176	TSG101	chr11	18503193	-	C10orf11	chr10	77676750	+
5CDS-intron	ENST00000199764	ENST00000531028		ChiTaRS3.1			BG953926	CEACAM6	chr19	42259569	-	CAPN5	chr11	76828927	-
5CDS-intron	ENST00000199764	ENST00000278559		ChiTaRS3.1			BG953926	CEACAM6	chr19	42259569	-	CAPN5	chr11	76828927	-
5CDS-intron	ENST00000199764	ENST00000529629		ChiTaRS3.1			BG953926	CEACAM6	chr19	42259569	-	CAPN5	chr11	76828927	-
5CDS-intron	ENST00000199764	ENST00000456580		ChiTaRS3.1			BG953926	CEACAM6	chr19	42259569	-	CAPN5	chr11	76828927	-
intron-intron	ENST00000478136	ENST00000389794		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000389793		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000536965		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000478136	ENST00000473037		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000389794		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000389793		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000536965		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000496687	ENST00000473037		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000389794		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000389793		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000536965		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000491017	ENST00000473037		ChiTaRS3.1			CR745606	FAM19A1	chr3	68550039	+	LYST	chr1	235992241	-
intron-intron	ENST00000545217	ENST00000545217		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-3UTR	ENST00000545217	ENST00000262259		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000545217	ENST00000596504		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000545217	ENST00000436511		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
3UTR-intron	ENST00000262259	ENST00000545217		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
3UTR-3UTR	ENST00000262259	ENST00000262259		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
3UTR-intron	ENST00000262259	ENST00000596504		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
3UTR-intron	ENST00000262259	ENST00000436511		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000596504	ENST00000545217		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-3UTR	ENST00000596504	ENST00000262259		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000596504	ENST00000596504		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000596504	ENST00000436511		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000436511	ENST00000545217		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-3UTR	ENST00000436511	ENST00000262259		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000436511	ENST00000596504		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-intron	ENST00000436511	ENST00000436511		ChiTaRS3.1			AL043886	ZNF175	chr19	52091985	-	ZNF175	chr19	52092033	+
intron-3CDS	ENST00000401604	ENST00000392935		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000522572		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000521158		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000401604	ENST00000022615		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373985	ENST00000392935		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000522572		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000521158		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373985	ENST00000022615		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373980	ENST00000392935		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000522572		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000521158		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373980	ENST00000022615		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000373975	ENST00000392935		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000522572		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000521158		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-intron	ENST00000373975	ENST00000022615		ChiTaRS3.1			BF873326	PRKG1	chr10	53457852	+	VDAC3	chr8	42259417	-
intron-3CDS	ENST00000435459	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000435459	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383787	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383785	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383788	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603752	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383781	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000603808	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000417856		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000394067		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000421552		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000316924		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000394078		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000394066		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
intron-3CDS	ENST00000383786	ENST00000394065		ChiTaRS3.1			BG009216	COLQ	chr3	15492919	+	KLC2	chr11	66029642	-
3UTR-3UTR	ENST00000318008	ENST00000318008		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-intron	ENST00000318008	ENST00000433206		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000318008	ENST00000435347		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-3UTR	ENST00000433206	ENST00000318008		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-intron	ENST00000433206	ENST00000433206		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-3UTR	ENST00000433206	ENST00000435347		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000435347	ENST00000318008		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-intron	ENST00000435347	ENST00000433206		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
3UTR-3UTR	ENST00000435347	ENST00000435347		ChiTaRS3.1			AA658506	LASP1	chr17	37077900	+	LASP1	chr17	37077976	-
intron-intron	ENST00000549231	ENST00000598205		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000376970		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000425460		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000440075		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000601313		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000262269		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-intron	ENST00000549231	ENST00000596571		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000598205		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000376970		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000425460		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000440075		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000601313		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000262269		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000355673	ENST00000596571		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000598205		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000376970		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000425460		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000440075		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000601313		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000262269		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
3UTR-intron	ENST00000431731	ENST00000596571		ChiTaRS3.1			AW362436	MBD6	chr12	57923765	+	MYH14	chr19	50808382	+
intron-3UTR	ENST00000376390	ENST00000299427		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-3UTR	ENST00000376390	ENST00000533371		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000376390	ENST00000534644		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000376390	ENST00000528657		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-3UTR	ENST00000491199	ENST00000299427		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-3UTR	ENST00000491199	ENST00000533371		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000491199	ENST00000534644		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000491199	ENST00000528657		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-3UTR	ENST00000376386	ENST00000299427		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-3UTR	ENST00000376386	ENST00000533371		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000376386	ENST00000534644		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
intron-intron	ENST00000376386	ENST00000528657		ChiTaRS3.1			BQ345796	PRAF2	chrX	48933124	+	TPP1	chr11	6635321	+
Frame-shit	ENST00000393386	ENST00000393386		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
5CDS-intron	ENST00000393386	ENST00000449182		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
5CDS-intron	ENST00000393386	ENST00000483028		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-3CDS	ENST00000449182	ENST00000393386		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-intron	ENST00000449182	ENST00000449182		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-intron	ENST00000449182	ENST00000483028		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-3CDS	ENST00000483028	ENST00000393386		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-intron	ENST00000483028	ENST00000449182		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-intron	ENST00000483028	ENST00000483028		ChiTaRS3.1			AW149516	PTPRZ1	chr7	121652404	-	PTPRZ1	chr7	121652442	+
intron-5UTR	ENST00000311573	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000311573	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000311573	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000311573	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368340	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368340	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368340	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368340	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000347088	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000347088	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000347088	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000347088	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000361831	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000361831	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000361831	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000361831	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000355499	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000355499	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000355499	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000355499	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000404643	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000404643	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000404643	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000404643	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000407221	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000407221	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000407221	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000407221	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000359205	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000359205	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000359205	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000359205	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000295566	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000295566	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000295566	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000295566	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368330	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368330	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368330	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368330	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368339	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000368339	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368339	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000368339	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000535662	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000535662	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000535662	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000535662	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000405763	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000405763	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000405763	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000405763	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000438245	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000438245	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000438245	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000438245	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000476093	ENST00000463284		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-5UTR	ENST00000476093	ENST00000358435		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000476093	ENST00000405021		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-intron	ENST00000476093	ENST00000372879		ChiTaRS3.1			BU951526	YY1AP1	chr1	155629732	+	TOMM7	chr7	22862456	-
intron-3CDS	ENST00000481781	ENST00000226209		ChiTaRS3.1			AI290406	INS-IGF2	chr11	2150443	+	MYH3	chr17	10534999	+
intron-3CDS	ENST00000481781	ENST00000583535		ChiTaRS3.1			AI290406	INS-IGF2	chr11	2150443	+	MYH3	chr17	10534999	+
intron-3CDS	ENST00000397270	ENST00000226209		ChiTaRS3.1			AI290406	INS-IGF2	chr11	2150443	+	MYH3	chr17	10534999	+
intron-3CDS	ENST00000397270	ENST00000583535		ChiTaRS3.1			AI290406	INS-IGF2	chr11	2150443	+	MYH3	chr17	10534999	+
3UTR-3UTR	ENST00000355327	ENST00000466801		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000355327	ENST00000409321		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000355327	ENST00000409115		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000355327	ENST00000341369		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000355327	ENST00000409683		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000355327	ENST00000410064		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000466801		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000409321		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000409115		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000341369		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000409683		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-3UTR	ENST00000261862	ENST00000410064		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000466801		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000409321		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000409115		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000341369		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000409683		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000357769	ENST00000410064		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000466801		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000409321		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000409115		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000341369		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000409683		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
intron-3UTR	ENST00000567838	ENST00000410064		ChiTaRS3.1			BG249716	THSD4	chr15	72073665	+	PTMA	chr2	232576655	+
3UTR-5UTR	ENST00000415430	ENST00000531188		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000415430	ENST00000530164		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000278572		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000534440		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000527446		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000526608		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000524851		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000415430	ENST00000529285		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000531188		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-5UTR	ENST00000217957	ENST00000530164		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000278572		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000534440		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000527446		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000526608		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000524851		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
3UTR-intron	ENST00000217957	ENST00000529285		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000531188		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-5UTR	ENST00000485533	ENST00000530164		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000278572		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000534440		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000527446		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000526608		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000524851		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-intron	ENST00000485533	ENST00000529285		ChiTaRS3.1			BQ084386	VSIG1	chrX	107322131	+	RPS3	chr11	75110563	+
intron-3CDS	ENST00000251195	ENST00000251195		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000251195	ENST00000466308		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000251195	ENST00000373220		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000251195	ENST00000520551		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000251195	ENST00000318121		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-3CDS	ENST00000466308	ENST00000251195		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000466308	ENST00000466308		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000466308	ENST00000373220		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000466308	ENST00000520551		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000466308	ENST00000318121		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-3CDS	ENST00000373220	ENST00000251195		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000373220	ENST00000466308		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000373220	ENST00000373220		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000373220	ENST00000520551		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000373220	ENST00000318121		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-3CDS	ENST00000520551	ENST00000251195		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000520551	ENST00000466308		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000520551	ENST00000373220		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000520551	ENST00000520551		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000520551	ENST00000318121		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-3CDS	ENST00000318121	ENST00000251195		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000318121	ENST00000466308		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000318121	ENST00000373220		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000318121	ENST00000520551		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-intron	ENST00000318121	ENST00000318121		ChiTaRS3.1			BE931476	CLSPN	chr1	36215283	+	CLSPN	chr1	36225987	-
intron-3UTR	ENST00000297641	ENST00000234677		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000297641	ENST00000369923		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000297641	ENST00000468588		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000380701	ENST00000234677		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000380701	ENST00000369923		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000380701	ENST00000468588		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000535968	ENST00000234677		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000535968	ENST00000369923		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000535968	ENST00000468588		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000486641	ENST00000234677		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000486641	ENST00000369923		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-3UTR	ENST00000486641	ENST00000468588		ChiTaRS3.1			BF378126	CCDC171	chr9	15764333	-	SARS	chr1	109780558	-
intron-intron	ENST00000300784	ENST00000373840		ChiTaRS3.1			BC113976	FN3K	chr17	80707351	+	RAB14	chr9	123944275	+
intron-intron	ENST00000572813	ENST00000373840		ChiTaRS3.1			BC113976	FN3K	chr17	80707351	+	RAB14	chr9	123944275	+
intron-3UTR	ENST00000371884	ENST00000361475		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000371884	ENST00000536701		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000371884	ENST00000536724		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-3UTR	ENST00000371883	ENST00000361475		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000371883	ENST00000536701		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000371883	ENST00000536724		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-3UTR	ENST00000294339	ENST00000361475		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000294339	ENST00000536701		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000294339	ENST00000536724		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-3UTR	ENST00000459729	ENST00000361475		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000459729	ENST00000536701		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000459729	ENST00000536724		ChiTaRS3.1			R97066	TAL1	chr1	47694111	+	TGM2	chr20	36757621	+
intron-intron	ENST00000302277	ENST00000547702		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000551295		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000547849		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000347616		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000348761		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000550305		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-intron	ENST00000302277	ENST00000360099		ChiTaRS3.1			BF983866	ZNF804A	chr2	185678725	-	CNTN1	chr12	41266392	-
intron-3UTR	ENST00000290378	ENST00000446176		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-3UTR	ENST00000290378	ENST00000420781		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000290378	ENST00000355681		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000290378	ENST00000443566		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000290378	ENST00000478129		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-3UTR	ENST00000557860	ENST00000446176		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-3UTR	ENST00000557860	ENST00000420781		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000557860	ENST00000355681		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000557860	ENST00000443566		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000557860	ENST00000478129		ChiTaRS3.1			BF827676	ACTC1	chr15	35084733	+	FNBP1	chr9	132652200	-
intron-intron	ENST00000356239	ENST00000356239		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000358100		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000359028		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000394564		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000356239	ENST00000491695		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000356239		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000358100		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000359028		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000394564		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000358100	ENST00000491695		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000356239		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000358100		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000359028		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000394564		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000359028	ENST00000491695		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000356239		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000358100		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000359028		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000394564		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000394564	ENST00000491695		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000356239		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000358100		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000359028		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000394564		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
intron-intron	ENST00000491695	ENST00000491695		ChiTaRS3.1			BQ184576	AKAP9	chr7	91725926	-	AKAP9	chr7	91732433	-
5CDS-3UTR	ENST00000368635	ENST00000368635		ChiTaRS3.1			AW451126	MARCKS	chr6	114181218	-	MARCKS	chr6	114181870	-
intron-3CDS	ENST00000397799	ENST00000375999		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000397799	ENST00000417793		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000397799	ENST00000358897		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000397799	ENST00000375998		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000397799	ENST00000375995		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000397799	ENST00000401090		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3UTR	ENST00000397799	ENST00000471347		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-intron	ENST00000397799	ENST00000314740		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000375999		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000417793		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000358897		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000375998		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000375995		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000303143	ENST00000401090		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3UTR	ENST00000303143	ENST00000471347		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-intron	ENST00000303143	ENST00000314740		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000375999		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000417793		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000358897		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000375998		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000375995		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3CDS	ENST00000481785	ENST00000401090		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-3UTR	ENST00000481785	ENST00000471347		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
intron-intron	ENST00000481785	ENST00000314740		ChiTaRS3.1			BM707746	COL8A2	chr1	36561313	-	FHAD1	chr1	15655879	+
3UTR-3UTR	ENST00000351004	ENST00000534336		ChiTaRS3.1			AI982766	GNAI1	chr7	79848348	-	MALAT1	chr11	65269890	-
intron-3UTR	ENST00000457358	ENST00000534336		ChiTaRS3.1			AI982766	GNAI1	chr7	79848348	-	MALAT1	chr11	65269890	-
intron-3UTR	ENST00000490206	ENST00000534336		ChiTaRS3.1			AI982766	GNAI1	chr7	79848348	-	MALAT1	chr11	65269890	-
intron-3UTR	ENST00000334940	ENST00000373960		ChiTaRS3.1			F00836	RASSF4	chr10	45471956	-	DES	chr2	220290894	-
intron-3UTR	ENST00000374417	ENST00000373960		ChiTaRS3.1			F00836	RASSF4	chr10	45471956	-	DES	chr2	220290894	-
intron-3UTR	ENST00000340258	ENST00000373960		ChiTaRS3.1			F00836	RASSF4	chr10	45471956	-	DES	chr2	220290894	-
intron-3UTR	ENST00000472561	ENST00000373960		ChiTaRS3.1			F00836	RASSF4	chr10	45471956	-	DES	chr2	220290894	-
intron-intron	ENST00000264122	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000264122	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000264122	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000264122	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000264122	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000264122	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000407712	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000394027	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000403724	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000405772	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000264122		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000407712		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000394027		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000403724		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000405772		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000545639	ENST00000545639		ChiTaRS3.1			AW805816	CBLB	chr3	105399438	+	CBLB	chr3	105399059	-
intron-intron	ENST00000535648	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000535648	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000346706	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000340094	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000345230	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000350763	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000341037	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000423613	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000537320	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000542877	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000535648		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000346706		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000340094		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000345230		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000350763		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000341037		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000423613		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000537320		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000542877		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
intron-intron	ENST00000481475	ENST00000481475		ChiTaRS3.1			AW993656	TNC	chr9	117822036	+	TNC	chr9	117825405	-
3UTR-intron	ENST00000328252	ENST00000304058		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
3UTR-intron	ENST00000328252	ENST00000510708		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
3UTR-intron	ENST00000328252	ENST00000515439		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000534838	ENST00000304058		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000534838	ENST00000510708		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000534838	ENST00000515439		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000483254	ENST00000304058		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000483254	ENST00000510708		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000483254	ENST00000515439		ChiTaRS3.1			BG261136	PAPPA	chr9	119161041	-	DTWD2	chr5	118309671	+
intron-intron	ENST00000530124	ENST00000537855		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000379096		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000518937		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000519303		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000517427		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000520527		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000448733		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000379097		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000530124	ENST00000523395		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000537855		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000379096		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000518937		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000519303		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000517427		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000520527		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000448733		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000379097		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000257247	ENST00000523395		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000537855		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000379096		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000518937		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000519303		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000517427		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000520527		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000448733		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000379097		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000525875	ENST00000523395		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000537855		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000379096		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000518937		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000519303		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000517427		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000520527		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000448733		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000379097		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
intron-intron	ENST00000378024	ENST00000523395		ChiTaRS3.1			BF990876	AHNAK	chr11	62288378	-	TPD52	chr8	81035516	+
5CDS-intron	ENST00000511685	ENST00000356126		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
5CDS-intron	ENST00000511685	ENST00000357146		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
5CDS-intron	ENST00000511685	ENST00000581618		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
5CDS-intron	ENST00000406950	ENST00000356126		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
5CDS-intron	ENST00000406950	ENST00000357146		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
5CDS-intron	ENST00000406950	ENST00000581618		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
intron-intron	ENST00000502950	ENST00000356126		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
intron-intron	ENST00000502950	ENST00000357146		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
intron-intron	ENST00000502950	ENST00000581618		ChiTaRS3.1			BE084706	TENM3	chr4	183694800	+	PSMD12	chr17	65346755	-
intron-5UTR	ENST00000578892	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000578379	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000449662	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000579788	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000418105	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000412356	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000581417	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-5UTR	ENST00000579687	ENST00000234590		ChiTaRS3.1			BE267696	ICAM2	chr17	62097977	+	ENO1	chr1	8938728	-
intron-intron	ENST00000368073	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000368073		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000326837		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000368074		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			CA450406	DCAF8	chr1	160248120	+	DCAF8	chr1	160248176	-
intron-intron	ENST00000239944	ENST00000293218		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000239944	ENST00000589666		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000479209	ENST00000293218		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000479209	ENST00000589666		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000487153	ENST00000293218		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000487153	ENST00000589666		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000491660	ENST00000293218		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000491660	ENST00000589666		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000490945	ENST00000293218		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-intron	ENST00000490945	ENST00000589666		ChiTaRS3.1			BE161616	SERP1	chr3	150261195	-	UNK	chr17	73787306	+
intron-3UTR	ENST00000588262	ENST00000588262		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000588262	ENST00000252530		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000588262	ENST00000343358		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-intron	ENST00000588262	ENST00000585954		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000252530	ENST00000588262		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000252530	ENST00000252530		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000252530	ENST00000343358		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-intron	ENST00000252530	ENST00000585954		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000343358	ENST00000588262		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000343358	ENST00000252530		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000343358	ENST00000343358		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-intron	ENST00000343358	ENST00000585954		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000585954	ENST00000588262		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000585954	ENST00000252530		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000585954	ENST00000343358		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-intron	ENST00000585954	ENST00000585954		ChiTaRS3.1			BM873666	FAM98C	chr19	38897752	-	FAM98C	chr19	38899623	+
intron-3UTR	ENST00000258349	ENST00000258349		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000258349	ENST00000367696		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000258349	ENST00000367694		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367696	ENST00000258349		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367696	ENST00000367696		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367696	ENST00000367694		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367694	ENST00000258349		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367694	ENST00000367696		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000367694	ENST00000367694		ChiTaRS3.1			DW438066	RC3H1	chr1	173907485	-	RC3H1	chr1	173907775	-
intron-3UTR	ENST00000558170	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000558170	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000558170	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000409487	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000409487	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000409487	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000303660	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000303660	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000303660	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000539609	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000539609	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000539609	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000493689	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000493689	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000493689	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000470879	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000470879	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000470879	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000465070	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000465070	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000465070	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000462355	ENST00000374282		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-3UTR	ENST00000462355	ENST00000374284		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
intron-intron	ENST00000462355	ENST00000493892		ChiTaRS3.1			AK129536	ZEB2	chr2	145267236	-	PAFAH2	chr1	26287504	-
3UTR-3UTR	ENST00000346916	ENST00000346916		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000545507		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000333511		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000346916	ENST00000353555		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000346916		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000545507		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000333511		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000545507	ENST00000353555		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000346916		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000545507		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000333511		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000333511	ENST00000353555		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000346916		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000545507		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000333511		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-3UTR	ENST00000353555	ENST00000353555		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
3UTR-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000346916		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000545507		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000333511		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-3UTR	ENST00000574970	ENST00000353555		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			AW973156	BSG	chr19	583290	+	BSG	chr19	583441	-
intron-intron	ENST00000204549	ENST00000257765		ChiTaRS3.1			BM723006	PDCD7	chr15	65410170	-	KHDC1	chr6	73993564	+
intron-intron	ENST00000204549	ENST00000370384		ChiTaRS3.1			BM723006	PDCD7	chr15	65410170	-	KHDC1	chr6	73993564	+
intron-intron	ENST00000204549	ENST00000484801		ChiTaRS3.1			BM723006	PDCD7	chr15	65410170	-	KHDC1	chr6	73993564	+
intron-5UTR	ENST00000369155	ENST00000263168		ChiTaRS3.1			DA420196	HIST2H2BE	chr1	149857733	-	CAPZA1	chr1	113162452	+
intron-3UTR	ENST00000369155	ENST00000476936		ChiTaRS3.1			DA420196	HIST2H2BE	chr1	149857733	-	CAPZA1	chr1	113162452	+
intron-intron	ENST00000302279	ENST00000302279		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000302279	ENST00000342116		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000302279	ENST00000524546		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000302279	ENST00000529687		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000342116	ENST00000302279		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000342116	ENST00000342116		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000342116	ENST00000524546		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000342116	ENST00000529687		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000524546	ENST00000302279		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000524546	ENST00000342116		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000524546	ENST00000524546		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000524546	ENST00000529687		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000529687	ENST00000302279		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000529687	ENST00000342116		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000529687	ENST00000524546		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-intron	ENST00000529687	ENST00000529687		ChiTaRS3.1			AA833856	FNTA	chr8	42936918	-	FNTA	chr8	42937972	-
intron-3CDS	ENST00000389153	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000389153	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000389153	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000389153	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000389153	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000389153	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000389153	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000608853	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000608853	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000608853	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000608853	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000608853	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000608853	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000608853	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000377617	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000377617	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000377617	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000377617	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000377617	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000377617	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000377617	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000550104	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000550104	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000550104	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000550104	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000550104	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000550104	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000550104	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000542287	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000542287	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000542287	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000542287	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000542287	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000542287	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000542287	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000535949	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000535949	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000535949	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000535949	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000535949	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000535949	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000535949	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000549455	ENST00000389153		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000549455	ENST00000608853		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3CDS	ENST00000549455	ENST00000377617		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000549455	ENST00000550104		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000549455	ENST00000542287		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-3UTR	ENST00000549455	ENST00000535949		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
intron-intron	ENST00000549455	ENST00000549455		ChiTaRS3.1			BF833296	ATXN2	chr12	111893860	-	ATXN2	chr12	111907991	-
3UTR-3UTR	ENST00000380737	ENST00000380737		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
3UTR-intron	ENST00000380737	ENST00000315985		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
3UTR-intron	ENST00000380737	ENST00000523473		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-3UTR	ENST00000315985	ENST00000380737		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-intron	ENST00000315985	ENST00000315985		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-intron	ENST00000315985	ENST00000523473		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-3UTR	ENST00000523473	ENST00000380737		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-intron	ENST00000523473	ENST00000315985		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-intron	ENST00000523473	ENST00000523473		ChiTaRS3.1			AL050206	PPP2R2A	chr8	26228891	-	PPP2R2A	chr8	26228929	+
intron-intron	ENST00000547002	ENST00000547002		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000547002	ENST00000442892		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000547002	ENST00000442218		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000547002	ENST00000476104		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442892	ENST00000547002		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442892	ENST00000442892		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442892	ENST00000442218		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442892	ENST00000476104		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442218	ENST00000547002		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442218	ENST00000442892		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442218	ENST00000442218		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000442218	ENST00000476104		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000476104	ENST00000547002		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000476104	ENST00000442892		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000476104	ENST00000442218		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
intron-intron	ENST00000476104	ENST00000476104		ChiTaRS3.1			BF872886	SLC48A1	chr12	48170789	-	SLC48A1	chr12	48171726	-
Frame-shit	ENST00000393217	ENST00000393217		ChiTaRS3.1			AV734396	LRRIQ1	chr12	85497856	+	LRRIQ1	chr12	85449324	+
5CDS-intron	ENST00000393217	ENST00000528777		ChiTaRS3.1			AV734396	LRRIQ1	chr12	85497856	+	LRRIQ1	chr12	85449324	+
intron-3CDS	ENST00000528777	ENST00000393217		ChiTaRS3.1			AV734396	LRRIQ1	chr12	85497856	+	LRRIQ1	chr12	85449324	+
intron-intron	ENST00000528777	ENST00000528777		ChiTaRS3.1			AV734396	LRRIQ1	chr12	85497856	+	LRRIQ1	chr12	85449324	+
intron-5UTR	ENST00000360239	ENST00000536543		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000360239	ENST00000372525		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000360239	ENST00000468913		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000326495	ENST00000536543		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000326495	ENST00000372525		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000326495	ENST00000468913		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000551165	ENST00000536543		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000551165	ENST00000372525		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000551165	ENST00000468913		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000326470	ENST00000536543		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000326470	ENST00000372525		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000326470	ENST00000468913		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000546812	ENST00000536543		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-5UTR	ENST00000546812	ENST00000372525		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000546812	ENST00000468913		ChiTaRS3.1			BF885036	SSH1	chr12	109176863	+	C1orf50	chr1	43241014	-
intron-3UTR	ENST00000165698	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000165698	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000165698	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000535845	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000535845	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000535845	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000541910	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000541910	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000541910	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000538924	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000538924	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000538924	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000540790	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000540790	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000540790	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000473407	ENST00000373302		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000473407	ENST00000373299		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-intron	ENST00000473407	ENST00000481942		ChiTaRS3.1			AI014296	REEP1	chr2	86442071	+	STXBP1	chr9	130453709	-
intron-3UTR	ENST00000294053	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000538039	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000437826	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000340729	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000543042	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000445069	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000538021	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
intron-3UTR	ENST00000542555	ENST00000367658		ChiTaRS3.1			BF815616	CLPB	chr11	72053183	+	HECA	chr6	139499229	+
5UTR-3CDS	ENST00000332149	ENST00000539068		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000332149	ENST00000536438		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000332149	ENST00000357266		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000332149	ENST00000540787		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000332149	ENST00000542713		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000539068		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000536438		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000398585	ENST00000357266		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000398585	ENST00000540787		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000398585	ENST00000542713		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000539068		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000536438		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3CDS	ENST00000458356	ENST00000357266		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000458356	ENST00000540787		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-5UTR	ENST00000458356	ENST00000542713		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000539068		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000536438		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-3CDS	ENST00000497881	ENST00000357266		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000497881	ENST00000540787		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
5UTR-5UTR	ENST00000497881	ENST00000542713		ChiTaRS3.1			HM245388	TMPRSS2	chr21	42880008	-	FKBP5	chr6	35565184	-
intron-3UTR	ENST00000265471	ENST00000250111		ChiTaRS3.1			BU738636	B3GAT3	chr11	62382807	+	ATP1B2	chr17	7559565	-
intron-3UTR	ENST00000531383	ENST00000250111		ChiTaRS3.1			BU738636	B3GAT3	chr11	62382807	+	ATP1B2	chr17	7559565	-
intron-3UTR	ENST00000534026	ENST00000250111		ChiTaRS3.1			BU738636	B3GAT3	chr11	62382807	+	ATP1B2	chr17	7559565	-
intron-intron	ENST00000437508	ENST00000534358		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000437508	ENST00000389506		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000437508	ENST00000354520		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000437508	ENST00000420751		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000494872	ENST00000534358		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000494872	ENST00000389506		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000494872	ENST00000354520		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000494872	ENST00000420751		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000338700	ENST00000534358		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000338700	ENST00000389506		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000338700	ENST00000354520		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
intron-intron	ENST00000338700	ENST00000420751		ChiTaRS3.1			BE142546	TRIM2	chr4	154180822	+	KMT2A	chr11	118326096	+
3UTR-3UTR	ENST00000396000	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000396000	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000396000	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000396000	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000396000	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000396000	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000262735	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000262735	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000262735	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000262735	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000262735	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000262735	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000407236	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000407236	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-3UTR	ENST00000407236	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000407236	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000407236	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
3UTR-intron	ENST00000407236	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000481567	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000481567	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000481567	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000481567	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000481567	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000481567	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000402126	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000402126	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000402126	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000402126	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000402126	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000402126	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000434345	ENST00000396000		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000434345	ENST00000262735		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-3UTR	ENST00000434345	ENST00000407236		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000434345	ENST00000481567		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000434345	ENST00000402126		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000434345	ENST00000434345		ChiTaRS3.1			AA807786	PPARA	chr22	46637815	+	PPARA	chr22	46637692	-
intron-intron	ENST00000553127	ENST00000193403		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000553127	ENST00000394419		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000553127	ENST00000438964		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000553127	ENST00000376839		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000553127	ENST00000538545		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000553127	ENST00000554508		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000193403		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000394419		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000438964		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000376839		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000538545		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000321898	ENST00000554508		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000193403		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000394419		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000438964		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000376839		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000538545		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552918	ENST00000554508		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000193403		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000394419		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000438964		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000376839		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000538545		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000547865	ENST00000554508		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000193403		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000394419		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000438964		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000376839		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000538545		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-intron	ENST00000552557	ENST00000554508		ChiTaRS3.1			BF925646	SPATS2	chr12	49810592	-	ACTN1	chr14	69362567	+
intron-3CDS	ENST00000355235	ENST00000378814		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000355235	ENST00000259711		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000355235	ENST00000378843		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000355235	ENST00000378826		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000355235	ENST00000378816		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000355235	ENST00000502704		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000355235	ENST00000503342		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000356834	ENST00000378814		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000356834	ENST00000259711		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000356834	ENST00000378843		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000356834	ENST00000378826		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000356834	ENST00000378816		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000356834	ENST00000502704		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000356834	ENST00000503342		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000518085	ENST00000378814		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000518085	ENST00000259711		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000518085	ENST00000378843		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000518085	ENST00000378826		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000518085	ENST00000378816		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000518085	ENST00000502704		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000518085	ENST00000503342		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000519746	ENST00000378814		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000519746	ENST00000259711		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000519746	ENST00000378843		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000519746	ENST00000378826		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000519746	ENST00000378816		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000519746	ENST00000502704		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000519746	ENST00000503342		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000444477	ENST00000378814		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000444477	ENST00000259711		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000444477	ENST00000378843		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000444477	ENST00000378826		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-3CDS	ENST00000444477	ENST00000378816		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000444477	ENST00000502704		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
intron-intron	ENST00000444477	ENST00000503342		ChiTaRS3.1			BF001556	TBC1D9B	chr5	179289957	+	KIF13A	chr6	17826007	+
Frame-shit	ENST00000304636	ENST00000304636		ChiTaRS3.1			BE170276	COL3A1	chr2	189875608	+	COL3A1	chr2	189875006	+
Frame-shit	ENST00000304636	ENST00000317840		ChiTaRS3.1			BE170276	COL3A1	chr2	189875608	+	COL3A1	chr2	189875006	+
Frame-shit	ENST00000317840	ENST00000304636		ChiTaRS3.1			BE170276	COL3A1	chr2	189875608	+	COL3A1	chr2	189875006	+
Frame-shit	ENST00000317840	ENST00000317840		ChiTaRS3.1			BE170276	COL3A1	chr2	189875608	+	COL3A1	chr2	189875006	+
intron-3UTR	ENST00000366558	ENST00000534336		ChiTaRS3.1			BG573396	KMO	chr1	241749484	+	MALAT1	chr11	65266714	+
intron-3UTR	ENST00000366559	ENST00000534336		ChiTaRS3.1			BG573396	KMO	chr1	241749484	+	MALAT1	chr11	65266714	+
intron-3UTR	ENST00000484628	ENST00000534336		ChiTaRS3.1			BG573396	KMO	chr1	241749484	+	MALAT1	chr11	65266714	+
intron-3UTR	ENST00000366557	ENST00000534336		ChiTaRS3.1			BG573396	KMO	chr1	241749484	+	MALAT1	chr11	65266714	+
3UTR-3UTR	ENST00000297268	ENST00000297268		ChiTaRS3.1			BI491586	COL1A2	chr7	94060125	-	COL1A2	chr7	94060014	+
5CDS-intron	ENST00000446824	ENST00000369005		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000513429		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000515273		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000515603		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000453444		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000358010		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000334433		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000369001		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000369000		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000360561		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000368999		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000369004		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000260733		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000446824	ENST00000493951		ChiTaRS3.1			DA602236	HIST1H3F	chr6	26250371	-	TACC2	chr10	123936625	+
5CDS-intron	ENST00000261308	ENST00000370328		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000261308	ENST00000370325		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000261308	ENST00000393914		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000261308	ENST00000483564		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000535264	ENST00000370328		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000535264	ENST00000370325		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000535264	ENST00000393914		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000535264	ENST00000483564		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000538977	ENST00000370328		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000538977	ENST00000370325		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000538977	ENST00000393914		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
5CDS-intron	ENST00000538977	ENST00000483564		ChiTaRS3.1			BF993166	PPWD1	chr5	64867896	-	GABRE	chrX	151127054	-
intron-3CDS	ENST00000359470	ENST00000359470		ChiTaRS3.1			BQ328966	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000359470	ENST00000461135		ChiTaRS3.1			BQ328966	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000461135	ENST00000359470		ChiTaRS3.1			BQ328966	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000461135	ENST00000461135		ChiTaRS3.1			BQ328966	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-intron	ENST00000522092	ENST00000539406		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000222792		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000435288		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000495789		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000539389		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000546235		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000409041		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000424025		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000439711		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000421775		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000522092	ENST00000410098		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000539406		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000222792		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000435288		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000495789		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000539389		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000546235		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000409041		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000424025		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000439711		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000421775		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000578889	ENST00000410098		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000539406		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000222792		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000435288		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000495789		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000539389		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000546235		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000409041		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000424025		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000439711		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000421775		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000577187	ENST00000410098		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000539406		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000222792		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000435288		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000495789		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000539389		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000546235		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000409041		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000424025		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000439711		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000421775		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000524139	ENST00000410098		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000539406		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000222792		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000435288		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000495789		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000539389		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000546235		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000409041		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000424025		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000439711		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000421775		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-intron	ENST00000520816	ENST00000410098		ChiTaRS3.1			BE698666	ERICH1-AS1	chr8	975065	-	CHN2	chr7	29251087	+
intron-3UTR	ENST00000377795	ENST00000377795		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000353334		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000377795	ENST00000524315		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000377795	ENST00000009530		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000377795		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000353334		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000353334	ENST00000524315		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000353334	ENST00000009530		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000377795		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000353334		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000524315	ENST00000524315		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000524315	ENST00000009530		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000377795		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000353334		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3UTR	ENST00000009530	ENST00000524315		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-intron	ENST00000009530	ENST00000009530		ChiTaRS3.1			H42916	CD74	chr5	149781367	+	CD74	chr5	149781523	-
intron-3CDS	ENST00000293725	ENST00000358807		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3CDS	ENST00000293725	ENST00000358577		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3CDS	ENST00000293725	ENST00000368952		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-intron	ENST00000293725	ENST00000483856		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3CDS	ENST00000595977	ENST00000358807		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3CDS	ENST00000595977	ENST00000358577		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3CDS	ENST00000595977	ENST00000368952		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-intron	ENST00000595977	ENST00000483856		ChiTaRS3.1			DB152946	ZNF563	chr19	12444284	-	MICAL1	chr6	109775324	-
intron-3UTR	ENST00000484698	ENST00000413644		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-3UTR	ENST00000484698	ENST00000368961		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-3UTR	ENST00000484698	ENST00000310786		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-3UTR	ENST00000484698	ENST00000275080		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-3UTR	ENST00000484698	ENST00000324953		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-intron	ENST00000484698	ENST00000512821		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-intron	ENST00000484698	ENST00000504373		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
intron-intron	ENST00000484698	ENST00000506649		ChiTaRS3.1			C16646	LINC00882	chr3	106830147	-	CD164	chr6	109687791	-
3UTR-intron	ENST00000356978	ENST00000295851		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261017		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000430418		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000424558		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261016		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000422511		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000430574		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261018		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000295851		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261017		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000430418		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000424558		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261016		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000422511		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000430574		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261018		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000295851		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261017		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000430418		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000424558		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261016		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000422511		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000430574		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261018		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000295851		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261017		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000430418		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000424558		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261016		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000422511		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000430574		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261018		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000295851		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261017		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000430418		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000424558		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261016		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000422511		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000430574		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261018		ChiTaRS3.1			CB250526	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM758326	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000532636	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000532636	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000532636	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000533540	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000533540	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000453788	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000453788	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534624	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534624	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000227378	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000227378	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000534319	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000534319	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526110	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526110	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000532636		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-3CDS	ENST00000526862	ENST00000533540		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000453788		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534624		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000227378		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000534319		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526110		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000526862	ENST00000526862		ChiTaRS3.1			BF082156	HSPA8	chr11	122929465	+	HSPA8	chr11	122928553	+
intron-intron	ENST00000446823	ENST00000375499		ChiTaRS3.1			BF840536	FOXK1	chr7	4809510	+	SDHB	chr1	17354815	-
intron-intron	ENST00000446823	ENST00000466613		ChiTaRS3.1			BF840536	FOXK1	chr7	4809510	+	SDHB	chr1	17354815	-
3UTR-intron	ENST00000328914	ENST00000375499		ChiTaRS3.1			BF840536	FOXK1	chr7	4809510	+	SDHB	chr1	17354815	-
3UTR-intron	ENST00000328914	ENST00000466613		ChiTaRS3.1			BF840536	FOXK1	chr7	4809510	+	SDHB	chr1	17354815	-
intron-intron	ENST00000372530	ENST00000559717		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000372530	ENST00000360468		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000372530	ENST00000431652		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000372530	ENST00000430376		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000372530	ENST00000558538		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000443426	ENST00000559717		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000443426	ENST00000360468		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000443426	ENST00000431652		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000443426	ENST00000430376		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000443426	ENST00000558538		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000244533	ENST00000559717		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000244533	ENST00000360468		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000244533	ENST00000431652		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000244533	ENST00000430376		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000244533	ENST00000558538		ChiTaRS3.1			BE145876	ABCC10	chr6	43407711	+	MAN2A2	chr15	91457544	+
intron-intron	ENST00000345617	ENST00000440491		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000345617	ENST00000338347		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000345617	ENST00000468645		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000345617	ENST00000281815		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000543185	ENST00000440491		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000543185	ENST00000338347		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000543185	ENST00000468645		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000543185	ENST00000281815		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000541256	ENST00000440491		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000541256	ENST00000338347		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000541256	ENST00000468645		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000541256	ENST00000281815		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000553145	ENST00000440491		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000553145	ENST00000338347		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000553145	ENST00000468645		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
intron-intron	ENST00000553145	ENST00000281815		ChiTaRS3.1			AF370406	HDAC4	chr2	240083801	-	NBPF9	chr1	144594047	+
5CDS-intron	ENST00000344921	ENST00000344921		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000344921	ENST00000263121		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000344921	ENST00000407422		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000344921	ENST00000407082		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000263121	ENST00000344921		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000263121	ENST00000263121		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000263121	ENST00000407422		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000263121	ENST00000407082		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407422	ENST00000344921		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407422	ENST00000263121		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407422	ENST00000407422		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407422	ENST00000407082		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407082	ENST00000344921		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407082	ENST00000263121		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407082	ENST00000407422		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407082	ENST00000407082		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
5CDS-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000477836	ENST00000344921		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000477836	ENST00000263121		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000477836	ENST00000407422		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000477836	ENST00000407082		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BG390166	SMARCB1	chr22	24135825	-	SMARCB1	chr22	24143116	+
intron-intron	ENST00000456731	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000456731	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000456731	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000456731	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000367537	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000367537	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000367537	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000367537	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000508461	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000508461	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000508461	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000508461	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000347615	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000347615	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000347615	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000347615	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507469	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507469	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507469	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507469	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000515829	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000515829	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000515829	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000515829	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507406	ENST00000583610		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507406	ENST00000394294		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507406	ENST00000264658		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-intron	ENST00000507406	ENST00000577399		ChiTaRS3.1			H80346	SMG7	chr1	183463949	+	FBXL20	chr17	37525934	+
intron-3CDS	ENST00000297785	ENST00000297785		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000297785	ENST00000376939		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000297785	ENST00000482210		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-3CDS	ENST00000376939	ENST00000297785		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000376939	ENST00000376939		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000376939	ENST00000482210		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-3CDS	ENST00000482210	ENST00000297785		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000482210	ENST00000376939		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000482210	ENST00000482210		ChiTaRS3.1			BU674486	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
3UTR-intron	ENST00000371486	ENST00000220592		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
3UTR-intron	ENST00000371486	ENST00000519980		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
3UTR-intron	ENST00000371486	ENST00000517293		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
intron-intron	ENST00000468572	ENST00000220592		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
intron-intron	ENST00000468572	ENST00000519980		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
intron-intron	ENST00000468572	ENST00000517293		ChiTaRS3.1			W58236	CPT2	chr1	53679563	-	AGO2	chr8	141563832	-
intron-intron	ENST00000339083	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000339083	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000339083	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000339083	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000339083	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000339083	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369633	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369642	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285735	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369638	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369637	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369636	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000297423		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000518074		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000541342		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000521214		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000517693		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000369632	ENST00000518060		ChiTaRS3.1			BF927466	RHOC	chr1	113244200	+	SPIDR	chr8	48616535	-
intron-intron	ENST00000285279	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000285279	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000433959	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000545390	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428648	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000428097	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000418904	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000454227	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000453256	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000427700	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000285279		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000433959		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000545390		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428648		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000428097		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000418904		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000454227		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000453256		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000427700		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
intron-intron	ENST00000471168	ENST00000471168		ChiTaRS3.1			AW590086	VOPP1	chr7	55559224	+	VOPP1	chr7	55557725	+
3UTR-3UTR	ENST00000040584	ENST00000040584		ChiTaRS3.1			CA427346	HOXC8	chr12	54406045	-	HOXC8	chr12	54405573	+
intron-intron	ENST00000607016	ENST00000607016		ChiTaRS3.1			AA649636	NUDT3	chr6	34304844	-	NUDT3	chr6	34304762	+
In-frame	ENST00000344063	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000344063	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
Frame-shit	ENST00000431533	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000431533	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000428193	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000428193	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000558815	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558815	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000560583	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560583	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000560055	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000560055	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000559463	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000559463	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
Frame-shit	ENST00000558131	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558131	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000558752	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000558752	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
In-frame	ENST00000458349	ENST00000344063		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000431533		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000428193		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000558815		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000560583		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000560055		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000559463		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000558131		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000558752		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
5CDS-intron	ENST00000458349	ENST00000458349		ChiTaRS3.1			AI907286	RPL28	chr19	55898013	+	RPL28	chr19	55899360	-
intron-intron	ENST00000298310	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000298310	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000298310	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000382135	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000382135	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000382135	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000545773	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000545773	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000545773	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556925	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556925	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556925	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000546046	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000546046	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000546046	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556672	ENST00000343882		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556672	ENST00000406360		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
intron-intron	ENST00000556672	ENST00000540898		ChiTaRS3.1			BF989506	NEMF	chr14	50295816	-	FOXO3	chr6	108951529	+
3UTR-3UTR	ENST00000543086	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000543086	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000543086	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000543086	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000543086	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000543086	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000543086	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000546231	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000546231	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000546231	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000546231	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000546231	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000546231	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000546231	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000397203	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000397203	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000397203	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000397203	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000397203	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000397203	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000397203	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000360905	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000360905	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000360905	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000360905	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000360905	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000360905	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000360905	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000589028	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000589028	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000589028	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000589028	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000589028	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-3UTR	ENST00000589028	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
3UTR-intron	ENST00000589028	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000355446	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000355446	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000355446	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000355446	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000355446	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000355446	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000355446	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000536573	ENST00000543086		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000536573	ENST00000546231		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000536573	ENST00000397203		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000536573	ENST00000360905		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000536573	ENST00000589028		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3UTR	ENST00000536573	ENST00000355446		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-intron	ENST00000536573	ENST00000536573		ChiTaRS3.1			BF381126	ERC1	chr12	1603458	+	ERC1	chr12	1600310	+
intron-3CDS	ENST00000316509	ENST00000252996		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-intron	ENST00000316509	ENST00000609045		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-3CDS	ENST00000404970	ENST00000252996		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-intron	ENST00000404970	ENST00000609045		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-3CDS	ENST00000488857	ENST00000252996		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-intron	ENST00000488857	ENST00000609045		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-3CDS	ENST00000481878	ENST00000252996		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-intron	ENST00000481878	ENST00000609045		ChiTaRS3.1			BE272026	VAMP2	chr17	8063924	+	TAF4	chr20	60573216	-
intron-3CDS	ENST00000202677	ENST00000351266		ChiTaRS3.1			BI033006	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000202677	ENST00000378980		ChiTaRS3.1			BI033006	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000495793	ENST00000351266		ChiTaRS3.1			BI033006	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000495793	ENST00000378980		ChiTaRS3.1			BI033006	RALGAPA2	chr20	20475902	+	CNTFR	chr9	34557534	+
intron-3CDS	ENST00000370092	ENST00000340811		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000370092	ENST00000070846		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000370092	ENST00000546741		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000217901	ENST00000340811		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000217901	ENST00000070846		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000217901	ENST00000546741		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000370093	ENST00000340811		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000370093	ENST00000070846		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000370093	ENST00000546741		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000427365	ENST00000340811		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000427365	ENST00000070846		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000427365	ENST00000546741		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000497043	ENST00000340811		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-3CDS	ENST00000497043	ENST00000070846		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000497043	ENST00000546741		ChiTaRS3.1			AW390706	IDH3G	chrX	153051428	+	PKP2	chr12	32949101	+
intron-intron	ENST00000372188	ENST00000372188		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372188	ENST00000372187		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372188	ENST00000372185		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372188	ENST00000372181		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372187	ENST00000372188		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372187	ENST00000372187		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372187	ENST00000372185		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372187	ENST00000372181		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372185	ENST00000372188		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372185	ENST00000372187		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372185	ENST00000372185		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372185	ENST00000372181		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372181	ENST00000372188		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372181	ENST00000372187		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372181	ENST00000372185		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
intron-intron	ENST00000372181	ENST00000372181		ChiTaRS3.1			BF830856	FAM213A	chr10	82173958	+	FAM213A	chr10	82170008	+
5CDS-intron	ENST00000596304	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000596304	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000596304	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596304	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596304	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596304	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000430157	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000430157	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000430157	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000430157	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000430157	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000430157	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596273	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000596273	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000596273	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596273	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596273	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000596273	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000442744	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000442744	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000442744	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000442744	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000442744	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000442744	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595683	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000595683	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000595683	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595683	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595683	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595683	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595158	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000595158	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000595158	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595158	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595158	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000595158	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000598780	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000598780	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000598780	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000598780	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000598780	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000598780	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599551	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000599551	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000599551	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599551	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599551	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599551	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000597451	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000597451	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000597451	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000597451	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000597451	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000597451	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599595	ENST00000337018		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000599595	ENST00000452918		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-3UTR	ENST00000599595	ENST00000601879		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599595	ENST00000600377		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599595	ENST00000456085		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
5CDS-intron	ENST00000599595	ENST00000598202		ChiTaRS3.1			BP212026	UBA52	chr19	18685944	+	SUGP2	chr19	19103589	-
intron-3CDS	ENST00000280333	ENST00000499676		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000489671		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000486111		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000477292		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000495310		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000467072		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000317104		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000310282		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000479040		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000280333	ENST00000397991		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-intron	ENST00000280333	ENST00000464782		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000499676		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000489671		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000486111		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000477292		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000495310		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000467072		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000317104		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000310282		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000479040		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-3CDS	ENST00000484400	ENST00000397991		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-intron	ENST00000484400	ENST00000464782		ChiTaRS3.1			BF904716	DOCK1	chr10	128982307	-	TFDP2	chr3	141671372	-
intron-intron	ENST00000295225	ENST00000334456		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000376450		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000444035		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000544570		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000418754		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000540345		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000295225	ENST00000540380		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000334456		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000376450		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000444035		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000544570		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000418754		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000540345		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000377181	ENST00000540380		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000334456		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000376450		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000444035		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000544570		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000418754		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000540345		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000360990	ENST00000540380		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000334456		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000376450		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000444035		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000544570		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000418754		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000540345		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000468529	ENST00000540380		ChiTaRS3.1			AB209076	KCNIP3	chr2	95979644	+	PDE2A	chr11	72361943	-
intron-intron	ENST00000294785	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000294785	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000294785	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000294785	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000294785	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000294785	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000294785	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000368063	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368063	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000535857	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000535857	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000392212	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000392212	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000459963	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000459963	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000396402		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000260433		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000396404		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000559878		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-3UTR	ENST00000368065	ENST00000405913		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000557858		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000368065	ENST00000492852		ChiTaRS3.1			AA677716	NCSTN	chr1	160317420	+	CYP19A1	chr15	51514138	+
intron-intron	ENST00000510325	ENST00000510325		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000510325	ENST00000359359		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-3UTR	ENST00000510325	ENST00000480824		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000510325	ENST00000355190		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000510325	ENST00000373685		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000359359	ENST00000510325		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000359359	ENST00000359359		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-3UTR	ENST00000359359	ENST00000480824		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000359359	ENST00000355190		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000359359	ENST00000373685		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
3UTR-intron	ENST00000480824	ENST00000510325		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
3UTR-intron	ENST00000480824	ENST00000359359		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
3UTR-3UTR	ENST00000480824	ENST00000480824		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
3UTR-intron	ENST00000480824	ENST00000355190		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
3UTR-intron	ENST00000480824	ENST00000373685		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000355190	ENST00000510325		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000355190	ENST00000359359		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-3UTR	ENST00000355190	ENST00000480824		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000355190	ENST00000355190		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000355190	ENST00000373685		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000373685	ENST00000510325		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000373685	ENST00000359359		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-3UTR	ENST00000373685	ENST00000480824		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000373685	ENST00000355190		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-intron	ENST00000373685	ENST00000373685		ChiTaRS3.1			AI282416	C6orf89	chr6	36894816	-	C6orf89	chr6	36894917	+
intron-3CDS	ENST00000607838	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000607838	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000591724	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000591724	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000332065	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000332065	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000589210	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000589210	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000335146	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000335146	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000467929	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000467929	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000405575	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000405575	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000411744	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000411744	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000406660	ENST00000336273		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-3CDS	ENST00000406660	ENST00000519934		ChiTaRS3.1			W78806	EXOC7	chr17	74079452	-	MTDH	chr8	98731291	+
intron-intron	ENST00000399082	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399082	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399082	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399079	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399079	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399079	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000374943	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000374943	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000374943	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000434651	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000434651	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000434651	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399084	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399084	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399084	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000460185	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000460185	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000460185	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000383121	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000383121	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000383121	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000548953	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000548953	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000548953	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000434886	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000434886	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000434886	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000430790	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000430790	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000430790	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000416192	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000416192	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000416192	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399074	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399074	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399074	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000422950	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000422950	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000422950	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000486521	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000486521	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000486521	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000424530	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000424530	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000424530	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000433936	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000433936	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000433936	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399088	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399088	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399088	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399065	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399065	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399065	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000413089	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000413089	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000413089	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000476430	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000476430	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000476430	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000383247	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000383247	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000383247	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000399670	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399670	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000399670	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000551970	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000551970	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000551970	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000415926	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000415926	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000415926	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000428219	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000428219	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000428219	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000419914	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000419914	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000419914	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000421888	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000421888	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000421888	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000424806	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000424806	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000424806	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000547498	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000547498	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000547498	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000493020	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000493020	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000493020	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000414518	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000414518	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000414518	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000549367	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000549367	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000549367	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000548083	ENST00000465917		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000548083	ENST00000245796		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-3UTR	ENST00000548083	ENST00000441564		ChiTaRS3.1			BF829776	HLA-DQB1	chr6	32628836	-	PSD4	chr2	113960210	-
intron-intron	ENST00000356860	ENST00000356860		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356860	ENST00000356253		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356860	ENST00000423588		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356860	ENST00000464354		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356860	ENST00000535308		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356253	ENST00000356860		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356253	ENST00000356253		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356253	ENST00000423588		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356253	ENST00000464354		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000356253	ENST00000535308		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000423588	ENST00000356860		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000423588	ENST00000356253		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000423588	ENST00000423588		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000423588	ENST00000464354		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000423588	ENST00000535308		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000464354	ENST00000356860		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000464354	ENST00000356253		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000464354	ENST00000423588		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000464354	ENST00000464354		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000464354	ENST00000535308		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000535308	ENST00000356860		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000535308	ENST00000356253		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000535308	ENST00000423588		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000535308	ENST00000464354		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-intron	ENST00000535308	ENST00000535308		ChiTaRS3.1			AA491946	CACNA2D1	chr7	81890826	-	CACNA2D1	chr7	81890737	+
intron-3UTR	ENST00000446450	ENST00000345317		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000446450	ENST00000539623		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000446450	ENST00000489977		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000354956	ENST00000345317		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354956	ENST00000539623		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354956	ENST00000489977		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000354449	ENST00000345317		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354449	ENST00000539623		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354449	ENST00000489977		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000469654	ENST00000345317		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000469654	ENST00000539623		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000469654	ENST00000489977		ChiTaRS3.1			H72466	ATG7	chr3	11473625	+	SKAP2	chr7	26708076	-
intron-3CDS	ENST00000252242	ENST00000252242		ChiTaRS3.1			CV372526	KRT5	chr12	52912850	+	KRT5	chr12	52913610	-
intron-3UTR	ENST00000341685	ENST00000295754		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
intron-3UTR	ENST00000341685	ENST00000359013		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
intron-3UTR	ENST00000352451	ENST00000295754		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
intron-3UTR	ENST00000352451	ENST00000359013		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
intron-3UTR	ENST00000496436	ENST00000295754		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
intron-3UTR	ENST00000496436	ENST00000359013		ChiTaRS3.1			BF670326	MYL1	chr2	211159104	-	TGFBR2	chr3	30734477	+
5CDS-5UTR	ENST00000474362	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000474362	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000474362	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000474362	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000374721	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000374721	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000374721	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000374721	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489388	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489388	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489388	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000489388	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374726	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374726	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374726	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000374726	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000429130	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000429130	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000429130	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000429130	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000469949	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000469949	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000469949	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000469949	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000460270	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000460270	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000460270	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000460270	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000354759	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000354759	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000354759	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000354759	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489321	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489321	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000489321	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000489321	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395895	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395895	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395895	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000395895	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000374728	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000374728	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000374728	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000374728	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000345491	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000345491	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000345491	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000345491	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000333809	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000333809	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000333809	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000333809	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000439705	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000439705	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000439705	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000439705	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000337656	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000337656	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000337656	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000337656	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374734	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374734	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000374734	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000374734	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000479070	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000479070	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000479070	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000479070	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000348787	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000348787	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000348787	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000348787	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000361599	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000361599	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000361599	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000361599	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000484283	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000484283	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000484283	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000484283	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395887	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395887	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000395887	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000395887	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463314	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463314	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463314	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000463314	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000342105	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000342105	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000342105	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000342105	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463960	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463960	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000463960	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000463960	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000487763	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000487763	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000487763	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000487763	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000473940	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000473940	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000473940	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000473940	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000488328	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000488328	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000488328	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000488328	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000356917	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000356917	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000356917	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000356917	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000488741	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000488741	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000488741	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000488741	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000474931	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000474931	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-5UTR	ENST00000474931	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
intron-intron	ENST00000474931	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000468236	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000468236	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000468236	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000468236	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000344351	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000344351	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-5UTR	ENST00000344351	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
3UTR-intron	ENST00000344351	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000490511	ENST00000395535		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000490511	ENST00000352861		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-5UTR	ENST00000490511	ENST00000415949		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
5CDS-intron	ENST00000490511	ENST00000450622		ChiTaRS3.1			BP384146	CREM	chr10	35500659	-	SEC61G	chr7	54826908	-
Frame-shit	ENST00000395743	ENST00000375859		ChiTaRS3.1			BI758136	BTC	chr4	75695268	-	SPIN1	chr9	91083284	+
Frame-shit	ENST00000395743	ENST00000541629		ChiTaRS3.1			BI758136	BTC	chr4	75695268	-	SPIN1	chr9	91083284	+
5CDS-3UTR	ENST00000395743	ENST00000469017		ChiTaRS3.1			BI758136	BTC	chr4	75695268	-	SPIN1	chr9	91083284	+
intron-3CDS	ENST00000376281	ENST00000405201		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376281	ENST00000404621		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376281	ENST00000404121		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376281	ENST00000356219		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376281	ENST00000397355		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376281	ENST00000429285		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000405201		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000404621		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000404121		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000356219		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000397355		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376263	ENST00000429285		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000405201		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000404621		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000404121		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000356219		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000397355		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000376264	ENST00000429285		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000405201		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000404621		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000404121		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000356219		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000397355		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000351839	ENST00000429285		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000405201		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000404621		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000404121		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000356219		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000397355		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3CDS	ENST00000360384	ENST00000429285		ChiTaRS3.1			U37146	HNRNPK	chr9	86586958	+	NCOR2	chr12	124841329	-
intron-3UTR	ENST00000448701	ENST00000375980		ChiTaRS3.1			CB985286	KLK1	chr19	51322425	-	EFHD2	chr1	15756752	+
intron-3UTR	ENST00000301420	ENST00000375980		ChiTaRS3.1			CB985286	KLK1	chr19	51322425	-	EFHD2	chr1	15756752	+
intron-intron	ENST00000303635	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000303635	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000303635	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000303635	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000439411	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000439411	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000439411	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000439411	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476163	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476163	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476163	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476163	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000557126	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000557126	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000557126	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000557126	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000473578	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000473578	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000473578	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000473578	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000467404	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000467404	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000467404	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000467404	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476864	ENST00000261211		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476864	ENST00000543119		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476864	ENST00000542666		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
intron-intron	ENST00000476864	ENST00000553042		ChiTaRS3.1			AL598376	CAMTA1	chr1	6892191	+	CDK17	chr12	96767305	+
5CDS-5UTR	ENST00000393600	ENST00000290573		ChiTaRS3.1			Z46376	FAM50A	chrX	153674037	-	HK2	chr2	75061284	+
5CDS-intron	ENST00000393600	ENST00000409174		ChiTaRS3.1			Z46376	FAM50A	chrX	153674037	-	HK2	chr2	75061284	+
5CDS-intron	ENST00000585331	ENST00000376573		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000585331	ENST00000545335		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000585331	ENST00000323883		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000585331	ENST00000422321		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000317615	ENST00000376573		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000317615	ENST00000545335		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000317615	ENST00000323883		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000317615	ENST00000422321		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000590217	ENST00000376573		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000590217	ENST00000545335		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000590217	ENST00000323883		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
5CDS-intron	ENST00000590217	ENST00000422321		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
intron-intron	ENST00000589405	ENST00000376573		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
intron-intron	ENST00000589405	ENST00000545335		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
intron-intron	ENST00000589405	ENST00000323883		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
intron-intron	ENST00000589405	ENST00000422321		ChiTaRS3.1			BG007476	PSMG2	chr18	12720568	-	PIP4K2A	chr10	22834971	-
intron-3CDS	ENST00000408742	ENST00000252825		ChiTaRS3.1			AK129876	MIR548N	chr2	179431497	-	HRC	chr19	49657592	-
intron-3CDS	ENST00000408742	ENST00000595625		ChiTaRS3.1			AK129876	MIR548N	chr2	179431497	-	HRC	chr19	49657592	-
intron-intron	ENST00000452631	ENST00000272427		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000452631	ENST00000490919		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000452631	ENST00000410104		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000346219	ENST00000272427		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000346219	ENST00000490919		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000346219	ENST00000410104		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000308059	ENST00000272427		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000308059	ENST00000490919		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000308059	ENST00000410104		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000469151	ENST00000272427		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000469151	ENST00000490919		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000469151	ENST00000410104		ChiTaRS3.1			BF997326	DLEC1	chr3	38157003	-	EXOC6B	chr2	72432203	-
intron-intron	ENST00000261038	ENST00000309955		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000443227		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000341222		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000340870		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000355558		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000341582		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000342795		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000395148		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000423241		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000490965		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000440180		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000457277		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000494258		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261038	ENST00000479953		ChiTaRS3.1			R71296	DIRC2	chr3	122514840	+	CFLAR	chr2	201998619	+
intron-intron	ENST00000261168	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000261168	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000261168	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000261168	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000261168	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000261168	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000543189	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000536444	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000544627	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000541654	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000261168		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000543189		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000536444		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000544627		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000541654		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-intron	ENST00000540793	ENST00000540793		ChiTaRS3.1			CV391536	ATF7IP	chr12	14609492	-	ATF7IP	chr12	14619524	-
intron-3CDS	ENST00000347401	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000347401	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000347401	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000353578	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000353578	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000295550	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000295550	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000472056	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000472056	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000409809	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000409809	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000346358	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000346358	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392004	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392004	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000392003	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000392003	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541179		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379749		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379747		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379743		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000379742		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-3CDS	ENST00000473258	ENST00000541481		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000473258	ENST00000497145		ChiTaRS3.1			BE160966	COL6A3	chr2	238233218	+	POSTN	chr13	38154076	-
intron-intron	ENST00000507166	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507166	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507166	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507166	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507166	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507166	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000358575	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000337488	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000507922	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000306932	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000507166		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000358575		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000337488		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000507922		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000306932		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-intron	ENST00000510668	ENST00000510668		ChiTaRS3.1			AJ708056	FIP1L1	chr4	54282394	+	FIP1L1	chr4	54262298	+
intron-3CDS	ENST00000562787	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562787	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562787	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562787	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000562787	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000562787	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000440851	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000440851	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000440851	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000440851	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000440851	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000440851	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000219172	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000219172	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000219172	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000219172	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000219172	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000219172	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000564817	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000564817	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000564817	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000564817	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000564817	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000564817	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562947	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562947	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562947	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000562947	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000562947	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000562947	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000445712	ENST00000562787		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000445712	ENST00000440851		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000445712	ENST00000219172		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-3CDS	ENST00000445712	ENST00000564817		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000445712	ENST00000562947		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-5UTR	ENST00000445712	ENST00000445712		ChiTaRS3.1			BP209496	CENPT	chr16	67865743	-	CENPT	chr16	67866416	-
intron-intron	ENST00000219837	ENST00000216862		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000219837	ENST00000395955		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000219837	ENST00000460643		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000219837	ENST00000395954		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000568230	ENST00000216862		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000568230	ENST00000395955		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000568230	ENST00000460643		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000568230	ENST00000395954		ChiTaRS3.1			AL711186	KNOP1	chr16	19729035	-	CYP24A1	chr20	52772031	-
intron-intron	ENST00000264712	ENST00000367858		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000524929		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000413996		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000237305		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000367857		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000528577		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000475719		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000264712	ENST00000489458		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000367858		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000524929		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000413996		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000237305		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000367857		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000528577		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000475719		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000405914	ENST00000489458		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000367858		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000524929		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000413996		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000237305		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000367857		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000528577		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000475719		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
intron-intron	ENST00000496378	ENST00000489458		ChiTaRS3.1			BF364236	KIF3C	chr2	26174383	-	SGK1	chr6	134561979	-
Frame-shit	ENST00000325954	ENST00000325954		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
Frame-shit	ENST00000325954	ENST00000413266		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
5CDS-intron	ENST00000325954	ENST00000542701		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
Frame-shit	ENST00000413266	ENST00000325954		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
Frame-shit	ENST00000413266	ENST00000413266		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
5CDS-intron	ENST00000413266	ENST00000542701		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
intron-3CDS	ENST00000542701	ENST00000325954		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
intron-3CDS	ENST00000542701	ENST00000413266		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
intron-intron	ENST00000542701	ENST00000542701		ChiTaRS3.1			AI065156	RNF10	chr12	120995112	-	RNF10	chr12	120995175	+
intron-3CDS	ENST00000364938	ENST00000317096		ChiTaRS3.1			CB145466	SNHG3	chr1	28834672	+	PARL	chr3	183580590	-
intron-3CDS	ENST00000364938	ENST00000311101		ChiTaRS3.1			CB145466	SNHG3	chr1	28834672	+	PARL	chr3	183580590	-
intron-3CDS	ENST00000364938	ENST00000435888		ChiTaRS3.1			CB145466	SNHG3	chr1	28834672	+	PARL	chr3	183580590	-
5CDS-intron	ENST00000395135	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000395135	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000395132	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268059	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000354026	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000268058	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000565898	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569477	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000569965	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000567543	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000435786	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000436891	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000564428	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000359928	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
5CDS-intron	ENST00000563500	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000395135		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000395132		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000268059		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000354026		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000268058		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000565898		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000569477		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000569965		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000567543		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000435786		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000436891		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000564428		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000359928		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000563500		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
intron-intron	ENST00000569161	ENST00000569161		ChiTaRS3.1			CF887266	PML	chr15	74325552	+	PML	chr15	74317306	+
Frame-shit	ENST00000409236	ENST00000289371		ChiTaRS3.1			DA619466	AFF3	chr2	100720864	-	EIF5B	chr2	99976698	+
Frame-shit	ENST00000356421	ENST00000289371		ChiTaRS3.1			DA619466	AFF3	chr2	100720864	-	EIF5B	chr2	99976698	+
Frame-shit	ENST00000317233	ENST00000289371		ChiTaRS3.1			DA619466	AFF3	chr2	100720864	-	EIF5B	chr2	99976698	+
Frame-shit	ENST00000409579	ENST00000289371		ChiTaRS3.1			DA619466	AFF3	chr2	100720864	-	EIF5B	chr2	99976698	+
intron-3CDS	ENST00000483600	ENST00000289371		ChiTaRS3.1			DA619466	AFF3	chr2	100720864	-	EIF5B	chr2	99976698	+
intron-3CDS	ENST00000373318	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373318	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000391987	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000391987	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000373320	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000373320	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000406958	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000406958	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000272972	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000272972	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000361678	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000361678	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000403283	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000403283	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000401804	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000401804	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000536462	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000536462	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000405523	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405523	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000405002	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000405002	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-3CDS	ENST00000462004	ENST00000375300		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000292055		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000375288		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000434315		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000542607		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000446921		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000462004	ENST00000488337		ChiTaRS3.1			AB023216	ANKMY1	chr2	241497218	-	SIK3	chr11	116969104	-
intron-intron	ENST00000520381	ENST00000520381		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000520381	ENST00000262215		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000520381	ENST00000517955		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000520381	ENST00000518230		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000262215	ENST00000520381		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000262215	ENST00000262215		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000262215	ENST00000517955		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000262215	ENST00000518230		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000517955	ENST00000520381		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000517955	ENST00000262215		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000517955	ENST00000517955		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000517955	ENST00000518230		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000518230	ENST00000520381		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000518230	ENST00000262215		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000518230	ENST00000517955		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000518230	ENST00000518230		ChiTaRS3.1			BQ379416	ARFGEF1	chr8	68214703	+	ARFGEF1	chr8	68200190	+
intron-intron	ENST00000264235	ENST00000477717		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-intron	ENST00000264235	ENST00000496845		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-intron	ENST00000316626	ENST00000477717		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-intron	ENST00000316626	ENST00000496845		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-intron	ENST00000473886	ENST00000477717		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-intron	ENST00000473886	ENST00000496845		ChiTaRS3.1			DA572046	GSK3B	chr3	119545067	-	ST6GALNAC5	chr1	77398571	+
intron-3CDS	ENST00000359774	ENST00000361891		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000359774	ENST00000480213		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000359774	ENST00000368681		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-3CDS	ENST00000358147	ENST00000361891		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000358147	ENST00000480213		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000358147	ENST00000368681		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-3CDS	ENST00000392796	ENST00000361891		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000392796	ENST00000480213		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000392796	ENST00000368681		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-3CDS	ENST00000409990	ENST00000361891		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000409990	ENST00000480213		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000409990	ENST00000368681		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-3CDS	ENST00000409124	ENST00000361891		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000409124	ENST00000480213		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
intron-intron	ENST00000409124	ENST00000368681		ChiTaRS3.1			AW999616	WDSUB1	chr2	160125408	+	ILF2	chr1	153640135	-
3UTR-intron	ENST00000377403	ENST00000356607		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000377403	ENST00000538836		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000377403	ENST00000492696		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000356607		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000538836		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000602477	ENST00000492696		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000356607		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000538836		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
3UTR-intron	ENST00000495451	ENST00000492696		ChiTaRS3.1			AA701256	H6PD	chr1	9331249	-	PEX14	chr1	10660226	-
intron-intron	ENST00000344256	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000344256	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000344256	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000344256	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000344256	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000344256	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000379598	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000379598	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000379598	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000379598	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000379598	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000379598	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000467519	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000467519	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000467519	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000467519	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000467519	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000467519	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000245960	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000245960	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000245960	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-3UTR	ENST00000245960	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-3UTR	ENST00000245960	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000245960	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000439880	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000439880	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000439880	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-3UTR	ENST00000439880	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-3UTR	ENST00000439880	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
3UTR-intron	ENST00000439880	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000340833	ENST00000344256		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000340833	ENST00000379598		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000340833	ENST00000467519		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000340833	ENST00000245960		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-3UTR	ENST00000340833	ENST00000439880		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000340833	ENST00000340833		ChiTaRS3.1			BF205766	CDC25B	chr20	3786298	-	CDC25B	chr20	3786398	+
intron-intron	ENST00000369905	ENST00000369905		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000369905	ENST00000470322		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000369905	ENST00000487599		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000369905	ENST00000545684		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000369905	ENST00000446605		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000470322	ENST00000369905		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000470322	ENST00000470322		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000470322	ENST00000487599		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000470322	ENST00000545684		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000470322	ENST00000446605		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000487599	ENST00000369905		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000487599	ENST00000470322		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000487599	ENST00000487599		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000487599	ENST00000545684		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000487599	ENST00000446605		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000545684	ENST00000369905		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000545684	ENST00000470322		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000545684	ENST00000487599		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000545684	ENST00000545684		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000545684	ENST00000446605		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000446605	ENST00000369905		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000446605	ENST00000470322		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000446605	ENST00000487599		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000446605	ENST00000545684		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
intron-intron	ENST00000446605	ENST00000446605		ChiTaRS3.1			BI006066	ACTR1A	chr10	104244110	-	ACTR1A	chr10	104247893	+
3UTR-3UTR	ENST00000370544	ENST00000246337		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
3UTR-3UTR	ENST00000370544	ENST00000494399		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
3UTR-3UTR	ENST00000370542	ENST00000246337		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
3UTR-3UTR	ENST00000370542	ENST00000494399		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
intron-3UTR	ENST00000489303	ENST00000246337		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
intron-3UTR	ENST00000489303	ENST00000494399		ChiTaRS3.1			BM718816	LMO4	chr1	87810949	-	UROD	chr1	45481176	+
intron-5UTR	ENST00000488299	ENST00000488299		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000488299	ENST00000380843		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000488299	ENST00000380851		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380843	ENST00000488299		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380843	ENST00000380843		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380843	ENST00000380851		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380851	ENST00000488299		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380851	ENST00000380843		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
intron-5UTR	ENST00000380851	ENST00000380851		ChiTaRS3.1			DB143046	IDH3B	chr20	2640212	-	IDH3B	chr20	2644136	-
3UTR-3UTR	ENST00000219022	ENST00000219022		ChiTaRS3.1			AW934846	OLFM4	chr13	53625480	-	OLFM4	chr13	53625225	+
intron-3CDS	ENST00000558939	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000442299	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000317509	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000560589	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000559929	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000559048	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000560939	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000557997	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000539550	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000558201	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000440567	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000559191	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000558379	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000557907	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000451782	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
intron-3CDS	ENST00000559574	ENST00000329138		ChiTaRS3.1			BE811386	TLE3	chr15	70359013	+	HGS	chr17	79662059	+
5CDS-intron	ENST00000382119	ENST00000244769		ChiTaRS3.1			BC036226	NANOGNB	chr12	7926718	+	ATXN1	chr6	16451739	-
5CDS-intron	ENST00000382119	ENST00000436367		ChiTaRS3.1			BC036226	NANOGNB	chr12	7926718	+	ATXN1	chr6	16451739	-
5CDS-intron	ENST00000382119	ENST00000467008		ChiTaRS3.1			BC036226	NANOGNB	chr12	7926718	+	ATXN1	chr6	16451739	-
intron-intron	ENST00000434000	ENST00000440781		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000434000	ENST00000431837		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000434000	ENST00000448290		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000434000	ENST00000551736		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000591680	ENST00000440781		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000591680	ENST00000431837		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000591680	ENST00000448290		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000591680	ENST00000551736		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000586265	ENST00000440781		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000586265	ENST00000431837		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000586265	ENST00000448290		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000586265	ENST00000551736		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000592154	ENST00000440781		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000592154	ENST00000431837		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000592154	ENST00000448290		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000592154	ENST00000551736		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000588554	ENST00000440781		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000588554	ENST00000431837		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-3UTR	ENST00000588554	ENST00000448290		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000588554	ENST00000551736		ChiTaRS3.1			CA432346	GPATCH8	chr17	42540551	-	IRAK4	chr12	44181548	-
intron-intron	ENST00000451564	ENST00000393376		ChiTaRS3.1			BX282586	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000473553		ChiTaRS3.1			BX282586	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-intron	ENST00000451564	ENST00000417368		ChiTaRS3.1			BX282586	TLR8-AS1	chrX	12939444	+	AASS	chr7	121716095	-
intron-3UTR	ENST00000384891	ENST00000328252		ChiTaRS3.1			AA368136	MIR205HG	chr1	209605779	-	PAPPA	chr9	119160285	+
intron-intron	ENST00000384891	ENST00000534838		ChiTaRS3.1			AA368136	MIR205HG	chr1	209605779	-	PAPPA	chr9	119160285	+
intron-intron	ENST00000384891	ENST00000483254		ChiTaRS3.1			AA368136	MIR205HG	chr1	209605779	-	PAPPA	chr9	119160285	+
intron-intron	ENST00000372189	ENST00000330978		ChiTaRS3.1			BI011926	RAPGEF1	chr9	134453934	+	BOLA2	chr16	29982848	-
intron-intron	ENST00000372195	ENST00000330978		ChiTaRS3.1			BI011926	RAPGEF1	chr9	134453934	+	BOLA2	chr16	29982848	-
intron-intron	ENST00000372190	ENST00000330978		ChiTaRS3.1			BI011926	RAPGEF1	chr9	134453934	+	BOLA2	chr16	29982848	-
intron-intron	ENST00000481260	ENST00000330978		ChiTaRS3.1			BI011926	RAPGEF1	chr9	134453934	+	BOLA2	chr16	29982848	-
intron-3CDS	ENST00000435803	ENST00000543418		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000435803	ENST00000392833		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000435803	ENST00000362010		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000435803	ENST00000392832		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000435803	ENST00000469007		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000435803	ENST00000494677		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000435803	ENST00000537559		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000435803	ENST00000468233		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000544596	ENST00000543418		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000544596	ENST00000392833		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000544596	ENST00000362010		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-3CDS	ENST00000544596	ENST00000392832		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000544596	ENST00000469007		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000544596	ENST00000494677		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000544596	ENST00000537559		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000544596	ENST00000468233		ChiTaRS3.1			BI022466	ABCA13	chr7	48529412	+	VEPH1	chr3	157082111	+
intron-intron	ENST00000300417	ENST00000254658		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000300417	ENST00000254657		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000300417	ENST00000440245		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000300417	ENST00000355768		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373324	ENST00000254658		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373324	ENST00000254657		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373324	ENST00000440245		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373324	ENST00000355768		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000323301	ENST00000254658		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000323301	ENST00000254657		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000323301	ENST00000440245		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000323301	ENST00000355768		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373322	ENST00000254658		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373322	ENST00000254657		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373322	ENST00000440245		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000373322	ENST00000355768		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000483302	ENST00000254658		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000483302	ENST00000254657		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000483302	ENST00000440245		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-intron	ENST00000483302	ENST00000355768		ChiTaRS3.1			BF752946	LRSAM1	chr9	130259185	+	PER2	chr2	239179729	+
intron-3UTR	ENST00000539563	ENST00000471646		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000539563	ENST00000341843		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000539563	ENST00000348438		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000539563	ENST00000506074		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000539563	ENST00000462882		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-3UTR	ENST00000490035	ENST00000471646		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000490035	ENST00000341843		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000490035	ENST00000348438		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000490035	ENST00000506074		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000490035	ENST00000462882		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-3UTR	ENST00000498645	ENST00000471646		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000498645	ENST00000341843		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000498645	ENST00000348438		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000498645	ENST00000506074		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
intron-intron	ENST00000498645	ENST00000462882		ChiTaRS3.1			D44636	LSAMP	chr3	115903524	-	CRHR2	chr7	30692802	+
5UTR-5UTR	ENST00000229239	ENST00000229239		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
5UTR-5UTR	ENST00000229239	ENST00000396856		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
5UTR-5UTR	ENST00000229239	ENST00000396861		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
5UTR-5UTR	ENST00000229239	ENST00000396859		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
5UTR-intron	ENST00000229239	ENST00000396858		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396856	ENST00000229239		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396856	ENST00000396856		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396856	ENST00000396861		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396856	ENST00000396859		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-intron	ENST00000396856	ENST00000396858		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396861	ENST00000229239		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396861	ENST00000396856		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396861	ENST00000396861		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396861	ENST00000396859		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-intron	ENST00000396861	ENST00000396858		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396859	ENST00000229239		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396859	ENST00000396856		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396859	ENST00000396861		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396859	ENST00000396859		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-intron	ENST00000396859	ENST00000396858		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396858	ENST00000229239		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396858	ENST00000396856		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396858	ENST00000396861		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-5UTR	ENST00000396858	ENST00000396859		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-intron	ENST00000396858	ENST00000396858		ChiTaRS3.1			BI003826	GAPDH	chr12	6643683	-	GAPDH	chr12	6643978	+
intron-3UTR	ENST00000336199	ENST00000280772		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000336199	ENST00000373827		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000336199	ENST00000355288		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000336199	ENST00000503366		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000336199	ENST00000510382		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000336199	ENST00000460468		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000366540	ENST00000280772		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000366540	ENST00000373827		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366540	ENST00000355288		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366540	ENST00000503366		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366540	ENST00000510382		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366540	ENST00000460468		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000366539	ENST00000280772		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000366539	ENST00000373827		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366539	ENST00000355288		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366539	ENST00000503366		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366539	ENST00000510382		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000366539	ENST00000460468		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000263826	ENST00000280772		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000263826	ENST00000373827		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000263826	ENST00000355288		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000263826	ENST00000503366		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000263826	ENST00000510382		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000263826	ENST00000460468		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000492957	ENST00000280772		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000492957	ENST00000373827		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000492957	ENST00000355288		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000492957	ENST00000503366		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000492957	ENST00000510382		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-intron	ENST00000492957	ENST00000460468		ChiTaRS3.1			BE708406	AKT3	chr1	243762537	-	ANK3	chr10	61789448	+
intron-3UTR	ENST00000434753	ENST00000353801		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3UTR	ENST00000434753	ENST00000371646		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3UTR	ENST00000434753	ENST00000371554		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3UTR	ENST00000468691	ENST00000353801		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3UTR	ENST00000468691	ENST00000371646		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3UTR	ENST00000468691	ENST00000371554		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000371199	ENST00000353801		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000371199	ENST00000371646		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000371199	ENST00000371554		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000355640	ENST00000353801		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000355640	ENST00000371646		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
3UTR-3UTR	ENST00000355640	ENST00000371554		ChiTaRS3.1			BU945016	XIAP	chrX	123041522	+	HSP90AB1	chr6	44221529	+
intron-3CDS	ENST00000243997	ENST00000243997		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000243997	ENST00000395663		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000243997	ENST00000395659		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395663	ENST00000243997		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395663	ENST00000395663		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395663	ENST00000395659		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395659	ENST00000243997		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395659	ENST00000395663		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3CDS	ENST00000395659	ENST00000395659		ChiTaRS3.1			AW801206	ATP5E	chr20	57605400	-	ATP5E	chr20	57605367	+
intron-3UTR	ENST00000368016	ENST00000368016		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368016	ENST00000368013		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368016	ENST00000368015		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368013	ENST00000368016		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368013	ENST00000368013		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368013	ENST00000368015		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368015	ENST00000368016		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368015	ENST00000368013		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
intron-3UTR	ENST00000368015	ENST00000368015		ChiTaRS3.1			AW408146	ARHGAP30	chr1	161016873	+	ARHGAP30	chr1	161017142	-
Frame-shit	ENST00000311117	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000311117	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000311117	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000311117	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000311117	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000311117	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000334914	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000334914	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000334914	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000334914	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000334914	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000334914	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000257745	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000257745	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000257745	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000257745	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000257745	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000257745	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000334877	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000334877	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
In-frame	ENST00000334877	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
Frame-shit	ENST00000334877	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000334877	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
5CDS-intron	ENST00000334877	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000476671	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000476671	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000476671	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000476671	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-intron	ENST00000476671	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-intron	ENST00000476671	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000480368	ENST00000311117		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000480368	ENST00000334914		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000480368	ENST00000257745		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-3CDS	ENST00000480368	ENST00000334877		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-intron	ENST00000480368	ENST00000476671		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-intron	ENST00000480368	ENST00000480368		ChiTaRS3.1			W27516	KMT2E	chr7	104752434	-	KMT2E	chr7	104752303	+
intron-intron	ENST00000337414	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000337414	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000337414	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000337414	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380718	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380718	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380718	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380718	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380732	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380732	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380732	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380732	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000534860	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000534860	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000534860	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000534860	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380736	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380736	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380736	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000380736	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000303025	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000303025	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000303025	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000303025	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000413512	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000413512	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000413512	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000413512	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000491514	ENST00000257749		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000491514	ENST00000537989		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000491514	ENST00000343122		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000491514	ENST00000470301		ChiTaRS3.1			AI817616	ARHGAP6	chrX	11155837	+	BACH2	chr6	90651070	+
intron-intron	ENST00000358026	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000358026	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000358026	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000358026	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000358026	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000344626	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000344626	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000344626	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000344626	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000344626	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000429416	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000429416	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000429416	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000429416	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000429416	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000541122	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000541122	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000541122	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000541122	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000541122	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000589677	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000589677	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000589677	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000589677	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000589677	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000444061	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000444061	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000444061	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000444061	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000444061	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000590574	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000590574	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000590574	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000590574	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000590574	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000413806	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000413806	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000413806	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000413806	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000413806	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000450717	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000450717	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000450717	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000450717	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000450717	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000538456	ENST00000402746		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000538456	ENST00000399654		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000538456	ENST00000406869		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000538456	ENST00000265854		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000538456	ENST00000486340		ChiTaRS3.1			BF195576	SMARCA4	chr19	11151952	-	MAD1L1	chr7	2137638	+
intron-intron	ENST00000355630	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000355630	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000396617	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402042	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000466278	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000407029	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000382518		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000009180		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000382515		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
intron-intron	ENST00000402630	ENST00000481267		ChiTaRS3.1			BF770206	MKL1	chr22	40948149	-	CD9	chr12	6314946	-
5CDS-intron	ENST00000434316	ENST00000582151		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-3UTR	ENST00000434316	ENST00000250124		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-3UTR	ENST00000434316	ENST00000396501		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
5CDS-intron	ENST00000434316	ENST00000423172		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-intron	ENST00000375391	ENST00000582151		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-3UTR	ENST00000375391	ENST00000250124		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-3UTR	ENST00000375391	ENST00000396501		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-intron	ENST00000375391	ENST00000423172		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-intron	ENST00000474393	ENST00000582151		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-3UTR	ENST00000474393	ENST00000250124		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-3UTR	ENST00000474393	ENST00000396501		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
3UTR-intron	ENST00000474393	ENST00000423172		ChiTaRS3.1			BF746416	TMCO3	chr13	114188426	-	MPDU1	chr17	7491009	-
intron-5UTR	ENST00000271277	ENST00000340384		ChiTaRS3.1			BE902916	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-5UTR	ENST00000607039	ENST00000340384		ChiTaRS3.1			BE902916	CTTNBP2NL	chr1	112959928	-	TUBB4B	chr9	140135754	+
intron-intron	ENST00000265732	ENST00000357674		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000314062		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000346964		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000419354		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000452595		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000422288		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000448528		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000443183		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000450955		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000392382		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000265732	ENST00000485409		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000357674		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000314062		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000346964		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000419354		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000452595		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000422288		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000448528		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000443183		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000450955		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000392382		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-intron	ENST00000481551	ENST00000485409		ChiTaRS3.1			BE152396	RBM48	chr7	92163489	-	DLG1	chr3	196772736	+
intron-3CDS	ENST00000390168	ENST00000434271		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000353047		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000530640		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000531089		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-3CDS	ENST00000390168	ENST00000453527		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000415599		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000345125		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000533455		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000390168	ENST00000534510		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-5UTR	ENST00000390168	ENST00000525076		ChiTaRS3.1			AF062716	H19	chr11	2018117	-	CTSB	chr8	11706623	-
intron-intron	ENST00000283928	ENST00000437232		ChiTaRS3.1			AU120316	JAZF1	chr7	28175197	-	VIM-AS1	chr10	17271277	+
intron-intron	ENST00000283928	ENST00000605833		ChiTaRS3.1			AU120316	JAZF1	chr7	28175197	-	VIM-AS1	chr10	17271277	+
intron-intron	ENST00000466516	ENST00000437232		ChiTaRS3.1			AU120316	JAZF1	chr7	28175197	-	VIM-AS1	chr10	17271277	+
intron-intron	ENST00000466516	ENST00000605833		ChiTaRS3.1			AU120316	JAZF1	chr7	28175197	-	VIM-AS1	chr10	17271277	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW436856	MALAT1	chr11	65267649	+	MALAT1	chr11	65266635	+
intron-3CDS	ENST00000332050	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
intron-intron	ENST00000332050	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
In-frame	ENST00000397938	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
5CDS-intron	ENST00000397938	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
In-frame	ENST00000406548	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
5CDS-intron	ENST00000406548	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
intron-3CDS	ENST00000331029	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
intron-intron	ENST00000331029	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
In-frame	ENST00000414183	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
5CDS-intron	ENST00000414183	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
In-frame	ENST00000333395	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
5CDS-intron	ENST00000333395	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
In-frame	ENST00000332035	ENST00000262053		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
5CDS-intron	ENST00000332035	ENST00000539132		ChiTaRS3.1			JF290487	EWSR1	chr22	29684775	+	ATF1	chr12	51203238	+
intron-intron	ENST00000299240	ENST00000162749		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000299240	ENST00000540022		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000299240	ENST00000366159		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000299240	ENST00000437813		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000039989	ENST00000162749		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000039989	ENST00000540022		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000039989	ENST00000366159		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000039989	ENST00000437813		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000526774	ENST00000162749		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000526774	ENST00000540022		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000526774	ENST00000366159		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
intron-intron	ENST00000526774	ENST00000437813		ChiTaRS3.1			AW753226	TTC17	chr11	43395299	-	TNFRSF1A	chr12	6441862	+
In-frame	ENST00000334690	ENST00000334690		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000334690	ENST00000357207		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000334690	ENST00000511409		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000334690	ENST00000512476		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
Frame-shit	ENST00000357207	ENST00000334690		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000357207	ENST00000357207		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000357207	ENST00000511409		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000357207	ENST00000512476		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
intron-3CDS	ENST00000511409	ENST00000334690		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
intron-intron	ENST00000511409	ENST00000357207		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
intron-intron	ENST00000511409	ENST00000511409		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
intron-intron	ENST00000511409	ENST00000512476		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
In-frame	ENST00000512476	ENST00000334690		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000512476	ENST00000357207		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000512476	ENST00000511409		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
5CDS-intron	ENST00000512476	ENST00000512476		ChiTaRS3.1			AL133076	TRAPPC11	chr4	184629570	-	TRAPPC11	chr4	184629626	+
intron-5UTR	ENST00000390237	ENST00000485803		ChiTaRS3.1			BE825166	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-5UTR	ENST00000390237	ENST00000373016		ChiTaRS3.1			BE825166	IGKC	chr2	89156838	-	FHL3	chr1	38463204	+
intron-intron	ENST00000329276	ENST00000538486		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000397323		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000320203		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000287771		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000339877		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000517860		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000520161		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000519647		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000520191		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000329276	ENST00000520916		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000538486		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000397323		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000320203		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000287771		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000339877		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000517860		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000520161		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000519647		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000520191		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000492135	ENST00000520916		ChiTaRS3.1			AV759376	NOP56	chr20	2637652	+	RBPMS	chr8	30385662	+
intron-intron	ENST00000316157	ENST00000316157		ChiTaRS3.1			BF328296	LARP4B	chr10	881526	-	LARP4B	chr10	881445	+
intron-intron	ENST00000316157	ENST00000469487		ChiTaRS3.1			BF328296	LARP4B	chr10	881526	-	LARP4B	chr10	881445	+
intron-intron	ENST00000469487	ENST00000316157		ChiTaRS3.1			BF328296	LARP4B	chr10	881526	-	LARP4B	chr10	881445	+
intron-intron	ENST00000469487	ENST00000469487		ChiTaRS3.1			BF328296	LARP4B	chr10	881526	-	LARP4B	chr10	881445	+
intron-intron	ENST00000372391	ENST00000323963		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372391	ENST00000440191		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372391	ENST00000356531		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000323963		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000440191		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000372388	ENST00000356531		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000323963		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000440191		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-intron	ENST00000459739	ENST00000356531		ChiTaRS3.1			BF987336	DLG5	chr10	79584177	+	EIF4A2	chr3	186502299	-
intron-3UTR	ENST00000269576	ENST00000269576		ChiTaRS3.1			BM966996	KRT10	chr17	38974467	+	KRT10	chr17	38974430	-
intron-3CDS	ENST00000377041	ENST00000377041		ChiTaRS3.1			CN413546	ABHD17B	chr9	74489632	+	ABHD17B	chr9	74489582	-
intron-3CDS	ENST00000377041	ENST00000333421		ChiTaRS3.1			CN413546	ABHD17B	chr9	74489632	+	ABHD17B	chr9	74489582	-
intron-3CDS	ENST00000333421	ENST00000377041		ChiTaRS3.1			CN413546	ABHD17B	chr9	74489632	+	ABHD17B	chr9	74489582	-
intron-3CDS	ENST00000333421	ENST00000333421		ChiTaRS3.1			CN413546	ABHD17B	chr9	74489632	+	ABHD17B	chr9	74489582	-
5UTR-5UTR	ENST00000304166	ENST00000304166		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-5UTR	ENST00000304166	ENST00000409363		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-5UTR	ENST00000304166	ENST00000396211		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-intron	ENST00000304166	ENST00000409489		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-5UTR	ENST00000409363	ENST00000304166		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-5UTR	ENST00000409363	ENST00000409363		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-5UTR	ENST00000409363	ENST00000396211		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
5UTR-intron	ENST00000409363	ENST00000409489		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000396211	ENST00000304166		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000396211	ENST00000409363		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000396211	ENST00000396211		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-intron	ENST00000396211	ENST00000409489		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000409489	ENST00000304166		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000409489	ENST00000409363		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-5UTR	ENST00000409489	ENST00000396211		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-intron	ENST00000409489	ENST00000409489		ChiTaRS3.1			D17516	ADCYAP1R1	chr7	31092219	-	ADCYAP1R1	chr7	31102809	+
intron-3UTR	ENST00000328252	ENST00000577702		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-3UTR	ENST00000328252	ENST00000310827		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000328252	ENST00000431926		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000328252	ENST00000415273		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-3UTR	ENST00000534838	ENST00000577702		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-3UTR	ENST00000534838	ENST00000310827		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000534838	ENST00000431926		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000534838	ENST00000415273		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-3UTR	ENST00000483254	ENST00000577702		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-3UTR	ENST00000483254	ENST00000310827		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000483254	ENST00000431926		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
intron-intron	ENST00000483254	ENST00000415273		ChiTaRS3.1			BF987676	PAPPA	chr9	119005755	+	DCAF7	chr17	61671037	+
Frame-shit	ENST00000324932	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000324932	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000324932	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000324932	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000324932	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000324932	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000324932	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000359171	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000359171	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000359171	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000359171	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000359171	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000359171	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000359171	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000355260	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000355260	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000355260	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000355260	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000355260	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000355260	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000355260	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397004	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397004	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397004	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397004	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397004	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397004	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397004	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397007	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397007	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
Frame-shit	ENST00000397007	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397007	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397007	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397007	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-3UTR	ENST00000397007	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3CDS	ENST00000488828	ENST00000380158		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3CDS	ENST00000488828	ENST00000264572		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3CDS	ENST00000488828	ENST00000408927		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3UTR	ENST00000488828	ENST00000512857		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3UTR	ENST00000488828	ENST00000453712		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3UTR	ENST00000488828	ENST00000339360		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
intron-3UTR	ENST00000488828	ENST00000408900		ChiTaRS3.1			AF133332	NUP98	chr11	3765739	-	RAP1GDS1	chr4	99214554	+
5CDS-intron	ENST00000420323	ENST00000347370		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000349431		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000339385		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000348298		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000400929		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000360466		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000400930		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
5CDS-intron	ENST00000420323	ENST00000491779		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000347370		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000349431		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000339385		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000348298		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000400929		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000360466		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000400930		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
intron-intron	ENST00000466628	ENST00000491779		ChiTaRS3.1			BF878256	DNAH1	chr3	52423502	-	UBE2J2	chr1	1205978	-
Frame-shit	ENST00000493429	ENST00000360467		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
5CDS-intron	ENST00000493429	ENST00000462309		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
Frame-shit	ENST00000467291	ENST00000360467		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
5CDS-intron	ENST00000467291	ENST00000462309		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
Frame-shit	ENST00000360937	ENST00000360467		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
5CDS-intron	ENST00000360937	ENST00000462309		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
Frame-shit	ENST00000416793	ENST00000360467		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
5CDS-intron	ENST00000416793	ENST00000462309		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
3UTR-3CDS	ENST00000480582	ENST00000360467		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
3UTR-intron	ENST00000480582	ENST00000462309		ChiTaRS3.1			BF991446	AOC1	chr7	150558254	+	COL4A2	chr13	111077137	-
intron-intron	ENST00000366630	ENST00000313116		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000366630	ENST00000377065		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000366630	ENST00000397050		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000366630	ENST00000465311		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000262861	ENST00000313116		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000262861	ENST00000377065		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000262861	ENST00000397050		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000262861	ENST00000465311		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000308942	ENST00000313116		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000308942	ENST00000377065		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000308942	ENST00000397050		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000308942	ENST00000465311		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000486472	ENST00000313116		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000486472	ENST00000377065		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000486472	ENST00000397050		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-intron	ENST00000486472	ENST00000465311		ChiTaRS3.1			BG986926	SIPA1L2	chr1	232586486	+	ZNF41	chrX	47323769	-
intron-3CDS	ENST00000394440	ENST00000394440		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000394440	ENST00000461540		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000394440	ENST00000544079		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000394440	ENST00000544185		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000394440	ENST00000538252		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-3CDS	ENST00000461540	ENST00000394440		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000461540	ENST00000461540		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000461540	ENST00000544079		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000461540	ENST00000544185		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000461540	ENST00000538252		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-3CDS	ENST00000544079	ENST00000394440		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544079	ENST00000461540		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544079	ENST00000544079		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544079	ENST00000544185		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544079	ENST00000538252		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-3CDS	ENST00000544185	ENST00000394440		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544185	ENST00000461540		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544185	ENST00000544079		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544185	ENST00000544185		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000544185	ENST00000538252		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-3CDS	ENST00000538252	ENST00000394440		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000538252	ENST00000461540		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000538252	ENST00000544079		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000538252	ENST00000544185		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
intron-intron	ENST00000538252	ENST00000538252		ChiTaRS3.1			BM918916	CCT4	chr2	62100169	-	CCT4	chr2	62099409	+
3UTR-3CDS	ENST00000360160	ENST00000535622		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000400246		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000266091		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000382105		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000400249		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000382112		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000382111		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000360160	ENST00000400248		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000360160	ENST00000494060		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000360160	ENST00000536766		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000360160	ENST00000400242		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000360160	ENST00000539165		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000535622		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000400246		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000266091		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000382105		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000400249		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000382112		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000382111		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-3CDS	ENST00000336079	ENST00000400248		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000336079	ENST00000494060		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000336079	ENST00000536766		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000336079	ENST00000400242		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000336079	ENST00000539165		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000535622		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000400246		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000266091		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000382105		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000400249		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000382112		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000382111		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-3CDS	ENST00000463199	ENST00000400248		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-intron	ENST00000463199	ENST00000494060		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-intron	ENST00000463199	ENST00000536766		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-intron	ENST00000463199	ENST00000400242		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
intron-intron	ENST00000463199	ENST00000539165		ChiTaRS3.1			BE938106	DDX3Y	chrY	15030040	+	DEPDC5	chr22	32188078	-
3UTR-intron	ENST00000307098	ENST00000535334		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000303097		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000394222		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000539730		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000471138		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-intron	ENST00000307098	ENST00000486562		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000535334		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000303097		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000394222		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000539730		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000471138		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
intron-intron	ENST00000392661	ENST00000486562		ChiTaRS3.1			BE181426	SPRR1B	chr1	153005181	-	ARL13B	chr3	93722769	-
3UTR-3UTR	ENST00000299767	ENST00000299767		ChiTaRS3.1			N67356	HSP90B1	chr12	104341567	-	HSP90B1	chr12	104341444	+
3UTR-3UTR	ENST00000361866	ENST00000337198		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
3UTR-intron	ENST00000361866	ENST00000347770		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
3UTR-intron	ENST00000361866	ENST00000522311		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
3UTR-3UTR	ENST00000498614	ENST00000337198		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
3UTR-intron	ENST00000498614	ENST00000347770		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
3UTR-intron	ENST00000498614	ENST00000522311		ChiTaRS3.1			AI890066	COL6A1	chr21	47423955	-	AZIN1	chr8	103838694	+
Frame-shit	ENST00000318522	ENST00000389048		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
Frame-shit	ENST00000402711	ENST00000389048		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
intron-3CDS	ENST00000482660	ENST00000389048		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
Frame-shit	ENST00000401738	ENST00000389048		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5UTR-3CDS	ENST00000453191	ENST00000389048		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5UTR-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
5UTR-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			AB462412	EML4	chr2	42528532	+	ALK	chr2	29446382	-
intron-5UTR	ENST00000251582	ENST00000374550		ChiTaRS3.1			CV387556	ADAMTS2	chr5	178701856	-	RPL11	chr1	24018296	+
intron-intron	ENST00000251582	ENST00000482370		ChiTaRS3.1			CV387556	ADAMTS2	chr5	178701856	-	RPL11	chr1	24018296	+
intron-5UTR	ENST00000274609	ENST00000374550		ChiTaRS3.1			CV387556	ADAMTS2	chr5	178701856	-	RPL11	chr1	24018296	+
intron-intron	ENST00000274609	ENST00000482370		ChiTaRS3.1			CV387556	ADAMTS2	chr5	178701856	-	RPL11	chr1	24018296	+
intron-intron	ENST00000302584	ENST00000299481		ChiTaRS3.1			DB315876	NEUROD2	chr17	37761142	+	NLRP14	chr11	7065505	-
intron-5UTR	ENST00000340253	ENST00000340253		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000340253	ENST00000296701		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000340253	ENST00000394370		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000340253	ENST00000509699		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000340253	ENST00000513826		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-5UTR	ENST00000296701	ENST00000340253		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000296701	ENST00000296701		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000296701	ENST00000394370		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000296701	ENST00000509699		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000296701	ENST00000513826		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-5UTR	ENST00000394370	ENST00000340253		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000394370	ENST00000296701		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000394370	ENST00000394370		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000394370	ENST00000509699		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000394370	ENST00000513826		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-5UTR	ENST00000509699	ENST00000340253		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000509699	ENST00000296701		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000509699	ENST00000394370		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000509699	ENST00000509699		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000509699	ENST00000513826		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-5UTR	ENST00000513826	ENST00000340253		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000513826	ENST00000296701		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000513826	ENST00000394370		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000513826	ENST00000509699		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
intron-intron	ENST00000513826	ENST00000513826		ChiTaRS3.1			DA811966	FBXO38	chr5	147809152	+	FBXO38	chr5	147763520	+
Frame-shit	ENST00000406386	ENST00000396353		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000406386	ENST00000396355		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000406386	ENST00000396354		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000406386	ENST00000342673		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
5CDS-intron	ENST00000406386	ENST00000571896		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000407319	ENST00000396353		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000407319	ENST00000396355		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000407319	ENST00000396354		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000407319	ENST00000342673		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
5CDS-intron	ENST00000407319	ENST00000571896		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000403663	ENST00000396353		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000403663	ENST00000396355		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000403663	ENST00000396354		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
Frame-shit	ENST00000403663	ENST00000342673		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
5CDS-intron	ENST00000403663	ENST00000571896		ChiTaRS3.1			BM913836	TRIOBP	chr22	38153945	+	NDE1	chr16	15785061	+
3UTR-3CDS	ENST00000159111	ENST00000394456		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
3UTR-3CDS	ENST00000159111	ENST00000429701		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
intron-3CDS	ENST00000381759	ENST00000394456		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
intron-3CDS	ENST00000381759	ENST00000429701		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
3UTR-3CDS	ENST00000536461	ENST00000394456		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
3UTR-3CDS	ENST00000536461	ENST00000429701		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
intron-3CDS	ENST00000592175	ENST00000394456		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
intron-3CDS	ENST00000592175	ENST00000429701		ChiTaRS3.1			BU738576	KDM4B	chr19	5151781	-	GTF2F1	chr19	6381804	-
intron-3UTR	ENST00000321265	ENST00000393459		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-3UTR	ENST00000321265	ENST00000224807		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-intron	ENST00000321265	ENST00000466982		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-3UTR	ENST00000484772	ENST00000393459		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-3UTR	ENST00000484772	ENST00000224807		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-intron	ENST00000484772	ENST00000466982		ChiTaRS3.1			AI148046	NUDC	chr1	27223279	+	SFXN3	chr10	102800571	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766246	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766246	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000371068	ENST00000431726		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000371068	ENST00000265562		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000491749	ENST00000431726		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000491749	ENST00000265562		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000433625	ENST00000431726		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000433625	ENST00000265562		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000538167	ENST00000431726		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
intron-3CDS	ENST00000538167	ENST00000265562		ChiTaRS3.1			BG271696	EFHC1	chr6	52318323	-	PTPN23	chr3	47449268	+
5CDS-intron	ENST00000227266	ENST00000380861		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000227266	ENST00000454666		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000227266	ENST00000466248		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000524463	ENST00000380861		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000524463	ENST00000454666		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000524463	ENST00000466248		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000529974	ENST00000380861		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000529974	ENST00000454666		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5CDS-intron	ENST00000529974	ENST00000466248		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5UTR-intron	ENST00000393301	ENST00000380861		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5UTR-intron	ENST00000393301	ENST00000454666		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
5UTR-intron	ENST00000393301	ENST00000466248		ChiTaRS3.1			DA446566	CTSC	chr11	88068105	-	WWC3	chrX	10035313	+
3UTR-3UTR	ENST00000340857	ENST00000278886		ChiTaRS3.1			AI687456	H1F0	chr22	38203342	-	NINL	chr20	25433561	+
3UTR-3UTR	ENST00000340857	ENST00000422516		ChiTaRS3.1			AI687456	H1F0	chr22	38203342	-	NINL	chr20	25433561	+
3UTR-5UTR	ENST00000340857	ENST00000464285		ChiTaRS3.1			AI687456	H1F0	chr22	38203342	-	NINL	chr20	25433561	+
intron-intron	ENST00000222553	ENST00000355621		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-intron	ENST00000222553	ENST00000473814		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-intron	ENST00000354289	ENST00000355621		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-intron	ENST00000354289	ENST00000473814		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-intron	ENST00000484527	ENST00000355621		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-intron	ENST00000484527	ENST00000473814		ChiTaRS3.1			BF874906	NAMPT	chr7	105906073	-	UBE2H	chr7	129554703	+
intron-3CDS	ENST00000403766	ENST00000488299		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380843		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380851		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000376440	ENST00000488299		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380843		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380851		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000460562	ENST00000488299		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380843		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380851		ChiTaRS3.1			AF023266	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-intron	ENST00000416569	ENST00000416569		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000416569	ENST00000304437		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000416569	ENST00000297303		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000304437	ENST00000416569		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000304437	ENST00000304437		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000304437	ENST00000297303		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000297303	ENST00000416569		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000297303	ENST00000304437		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000297303	ENST00000297303		ChiTaRS3.1			CX165016	XKR6	chr8	10966943	-	XKR6	chr8	10971602	-
intron-intron	ENST00000513000	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000513000	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000509777	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000509777	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000262992	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000262992	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000308502	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000308502	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000508116	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000508116	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000507861	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000507861	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000506217	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000506217	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000508084	ENST00000333538		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000508084	ENST00000498380		ChiTaRS3.1			S60878	INPP4B	chr4	143719135	+	WBSCR17	chr7	70897806	-
intron-intron	ENST00000522362	ENST00000325722		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522362	ENST00000373266		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522362	ENST00000485551		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000325722		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000373266		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000485551		ChiTaRS3.1			AU125876	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000444610	ENST00000398117		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000444610	ENST00000333681		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000444610	ENST00000590515		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000444610	ENST00000589955		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000444610	ENST00000444484		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000218981	ENST00000398117		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000218981	ENST00000333681		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000218981	ENST00000590515		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000218981	ENST00000589955		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000218981	ENST00000444484		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000280056	ENST00000398117		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000280056	ENST00000333681		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000280056	ENST00000590515		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000280056	ENST00000589955		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000280056	ENST00000444484		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000490949	ENST00000398117		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000490949	ENST00000333681		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000490949	ENST00000590515		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000490949	ENST00000589955		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
intron-intron	ENST00000490949	ENST00000444484		ChiTaRS3.1			CV418406	DHRS12	chr13	52353930	+	BCL2	chr18	60854950	+
5CDS-intron	ENST00000447866	ENST00000373874		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
5CDS-intron	ENST00000447866	ENST00000373872		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
5CDS-intron	ENST00000368356	ENST00000373874		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
5CDS-intron	ENST00000368356	ENST00000373872		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
intron-intron	ENST00000487002	ENST00000373874		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
intron-intron	ENST00000487002	ENST00000373872		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
5CDS-intron	ENST00000356657	ENST00000373874		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
5CDS-intron	ENST00000356657	ENST00000373872		ChiTaRS3.1			BF928396	FDPS	chr1	155289617	-	TGIF2	chr20	35215858	-
intron-3UTR	ENST00000375631	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000375631	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000375631	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000375631	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000423382	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000423382	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000423382	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000423382	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000439648	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000439648	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000439648	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000439648	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000434496	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000434496	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000434496	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000434496	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000422978	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000422978	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000422978	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000422978	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000229725	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000229725	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000229725	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000229725	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000437432	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000437432	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000437432	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000437432	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000411774	ENST00000550487		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000411774	ENST00000317943		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000411774	ENST00000550654		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
intron-3UTR	ENST00000411774	ENST00000548985		ChiTaRS3.1			BG996916	NEU1	chr6	3159921	+	COX14	chr12	50514195	-
3UTR-3UTR	ENST00000393459	ENST00000324439		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-3UTR	ENST00000393459	ENST00000451788		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-3UTR	ENST00000393459	ENST00000380840		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000393459	ENST00000512706		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000393459	ENST00000513257		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000393459	ENST00000514021		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-3UTR	ENST00000224807	ENST00000324439		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-3UTR	ENST00000224807	ENST00000451788		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-3UTR	ENST00000224807	ENST00000380840		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000224807	ENST00000512706		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000224807	ENST00000513257		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
3UTR-intron	ENST00000224807	ENST00000514021		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-3UTR	ENST00000466982	ENST00000324439		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-3UTR	ENST00000466982	ENST00000451788		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-3UTR	ENST00000466982	ENST00000380840		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-intron	ENST00000466982	ENST00000512706		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-intron	ENST00000466982	ENST00000513257		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-intron	ENST00000466982	ENST00000514021		ChiTaRS3.1			CA425666	SFXN3	chr10	102800777	-	RCHY1	chr4	76407301	+
intron-intron	ENST00000395388	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000395388	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000374982	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383127	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000459705	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000434866	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000416883	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000481943	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
5CDS-intron	ENST00000411505	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000414698	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000546379	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000493431	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000418111	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383259	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000551750	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000461633	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000383258	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000442960	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000549531	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000482781	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000415767	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000411524	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000553193	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000498597	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000467460		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000263962		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000392649		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000485199		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000468741		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000476138		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000467440		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000472994		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000464614		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-intron	ENST00000427753	ENST00000465751		ChiTaRS3.1			AB209166	HLA-DRA	chr6	3689255	+	PEX5L	chr3	179749172	-
intron-3UTR	ENST00000329421	ENST00000329421		ChiTaRS3.1			BF748436	MARCKSL1	chr1	32799950	-	MARCKSL1	chr1	32800034	+
Frame-shit	ENST00000308664	ENST00000308664		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000308664	ENST00000395494		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000308664	ENST00000539276		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000308664	ENST00000550248		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000308664	ENST00000552636		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000395494	ENST00000308664		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000395494	ENST00000395494		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000395494	ENST00000539276		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000395494	ENST00000550248		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000395494	ENST00000552636		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000539276	ENST00000308664		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000539276	ENST00000395494		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
Frame-shit	ENST00000539276	ENST00000539276		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000539276	ENST00000550248		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
5CDS-intron	ENST00000539276	ENST00000552636		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000550248	ENST00000308664		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000550248	ENST00000395494		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000550248	ENST00000539276		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-intron	ENST00000550248	ENST00000550248		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-intron	ENST00000550248	ENST00000552636		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000552636	ENST00000308664		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000552636	ENST00000395494		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-3CDS	ENST00000552636	ENST00000539276		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-intron	ENST00000552636	ENST00000550248		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
intron-intron	ENST00000552636	ENST00000552636		ChiTaRS3.1			F00066	ATP2A2	chr12	110778520	+	ATP2A2	chr12	110764242	+
In-frame	ENST00000517671	ENST00000389048		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000517671	ENST00000431873		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000517671	ENST00000498037		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000296930	ENST00000389048		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000296930	ENST00000431873		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000296930	ENST00000498037		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000351986	ENST00000389048		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000351986	ENST00000431873		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000351986	ENST00000498037		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
In-frame	ENST00000393820	ENST00000389048		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000393820	ENST00000431873		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
5CDS-intron	ENST00000393820	ENST00000498037		ChiTaRS3.1			U04946	NPM1	chr5	170818803	+	ALK	chr2	29446396	-
intron-intron	ENST00000229416	ENST00000376215		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000229416	ENST00000376203		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000229416	ENST00000470978		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000514004	ENST00000376215		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000514004	ENST00000376203		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000514004	ENST00000470978		ChiTaRS3.1			DB542246	GCLC	chr6	53374761	-	PDSS1	chr10	27034523	-
intron-intron	ENST00000435064	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000435064	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000435064	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000411962	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000411962	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000411962	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000462432	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000462432	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000462432	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000540437	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000540437	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000540437	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000421495	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000421495	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000421495	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000419704	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000419704	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000419704	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000450926	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000450926	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000450926	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000545578	ENST00000286301		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000545578	ENST00000515239		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000545578	ENST00000543093		ChiTaRS3.1			BC017216	CPSF3L	chr1	1256455	+	CSF1R	chr5	149473881	+
intron-intron	ENST00000566228	ENST00000457167		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000566228	ENST00000426588		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000566228	ENST00000316603		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000566228	ENST00000589547		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000323433	ENST00000457167		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000323433	ENST00000426588		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000323433	ENST00000316603		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000323433	ENST00000589547		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000306030	ENST00000457167		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000306030	ENST00000426588		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000306030	ENST00000316603		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000306030	ENST00000589547		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000568359	ENST00000457167		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000568359	ENST00000426588		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000568359	ENST00000316603		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000568359	ENST00000589547		ChiTaRS3.1			BE148166	SNX29	chr16	12146318	-	DNAJC7	chr17	40137187	+
intron-intron	ENST00000357395	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000357395	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000358025	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000344113	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000341472	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000356081	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554584	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555002	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000394768	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000556725	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000553455	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000555022	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000554805	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000458046	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000357395		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000358025		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000344113		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000341472		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000356081		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000554584		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000555002		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000394768		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000556725		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000553455		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000555022		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000554805		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000458046		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000441438	ENST00000441438		ChiTaRS3.1			AU185086	SYNE2	chr14	64465632	-	SYNE2	chr14	64483359	-
intron-intron	ENST00000536551	ENST00000536551		ChiTaRS3.1			CB306736	STMND1	chr6	17122585	-	STMND1	chr6	17123347	-
intron-3CDS	ENST00000306065	ENST00000306065		ChiTaRS3.1			BE079446	ANKRD27	chr19	33113445	+	ANKRD27	chr19	33113473	-
intron-intron	ENST00000306065	ENST00000587352		ChiTaRS3.1			BE079446	ANKRD27	chr19	33113445	+	ANKRD27	chr19	33113473	-
intron-3CDS	ENST00000587352	ENST00000306065		ChiTaRS3.1			BE079446	ANKRD27	chr19	33113445	+	ANKRD27	chr19	33113473	-
intron-intron	ENST00000587352	ENST00000587352		ChiTaRS3.1			BE079446	ANKRD27	chr19	33113445	+	ANKRD27	chr19	33113473	-
intron-intron	ENST00000393038	ENST00000261658		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000393038	ENST00000563971		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000393038	ENST00000426842		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000393038	ENST00000563082		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000537860	ENST00000261658		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000537860	ENST00000563971		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000537860	ENST00000426842		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000537860	ENST00000563082		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000409433	ENST00000261658		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000409433	ENST00000563971		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000409433	ENST00000426842		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000409433	ENST00000563082		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000470557	ENST00000261658		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000470557	ENST00000563971		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000470557	ENST00000426842		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000470557	ENST00000563082		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000579915	ENST00000261658		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000579915	ENST00000563971		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000579915	ENST00000426842		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000579915	ENST00000563082		ChiTaRS3.1			BE939206	PTRH2	chr17	57774985	+	BFAR	chr16	14742169	+
intron-intron	ENST00000517671	ENST00000517671		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000517671	ENST00000296930		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000517671	ENST00000351986		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000517671	ENST00000393820		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000296930	ENST00000517671		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000296930	ENST00000296930		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000296930	ENST00000351986		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000296930	ENST00000393820		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000351986	ENST00000517671		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000351986	ENST00000296930		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000351986	ENST00000351986		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000351986	ENST00000393820		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
3UTR-intron	ENST00000393820	ENST00000517671		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
3UTR-intron	ENST00000393820	ENST00000296930		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
3UTR-intron	ENST00000393820	ENST00000351986		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
3UTR-intron	ENST00000393820	ENST00000393820		ChiTaRS3.1			BC024716	NPM1	chr5	170833727	+	NPM1	chr7	11297520	-
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000552699		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000549385		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000395006		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000547798		ChiTaRS3.1			BQ775216	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
5CDS-intron	ENST00000359511	ENST00000370689		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000370685		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000394838		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000370682		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000394839		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000370688		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000470673		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000359511	ENST00000370680		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000370689		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000370685		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000394838		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000370682		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000394839		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000370688		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000470673		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
5CDS-intron	ENST00000423538	ENST00000370680		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000370689		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000370685		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000394838		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000370682		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000394839		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000370688		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000470673		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
3UTR-intron	ENST00000469537	ENST00000370680		ChiTaRS3.1			DA223586	SLC25A44	chr1	156169881	+	PRKACB	chr1	84630378	+
intron-3UTR	ENST00000207549	ENST00000328252		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000207549	ENST00000534838		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000207549	ENST00000483254		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-3UTR	ENST00000412096	ENST00000328252		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000412096	ENST00000534838		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000412096	ENST00000483254		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-3UTR	ENST00000587504	ENST00000328252		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000587504	ENST00000534838		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-intron	ENST00000587504	ENST00000483254		ChiTaRS3.1			R26106	UNC13D	chr17	73823386	+	PAPPA	chr9	119161162	-
intron-3CDS	ENST00000313182	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000313182	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000313182	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000313182	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000313182	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000395644	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000395644	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000395644	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000395644	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000395644	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000567744	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000567744	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000567744	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000567744	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000567744	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000431261	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000431261	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000431261	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000431261	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000431261	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569491	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569491	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569491	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569491	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000569491	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000420799	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000420799	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000420799	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000420799	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000420799	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000442903	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000442903	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000442903	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000442903	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000442903	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569180	ENST00000464233		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569180	ENST00000436010		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569180	ENST00000495273		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-3CDS	ENST00000569180	ENST00000467549		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-5UTR	ENST00000569180	ENST00000466906		ChiTaRS3.1			AW389656	VWA9	chr15	65899757	-	ROBO1	chr3	78656056	+
intron-intron	ENST00000368679	ENST00000328299		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
intron-intron	ENST00000368679	ENST00000464140		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
intron-intron	ENST00000368676	ENST00000328299		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
intron-intron	ENST00000368676	ENST00000464140		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
intron-intron	ENST00000467145	ENST00000328299		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
intron-intron	ENST00000467145	ENST00000464140		ChiTaRS3.1			BG003526	ADAM12	chr10	127886468	-	ST6GALNAC3	chr1	76769836	+
5CDS-5UTR	ENST00000340473	ENST00000350148		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
5CDS-5UTR	ENST00000340473	ENST00000379826		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
5CDS-5UTR	ENST00000340473	ENST00000483941		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
5CDS-intron	ENST00000340473	ENST00000399275		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
intron-5UTR	ENST00000494087	ENST00000350148		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
intron-5UTR	ENST00000494087	ENST00000379826		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
intron-5UTR	ENST00000494087	ENST00000483941		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
intron-intron	ENST00000494087	ENST00000399275		ChiTaRS3.1			DA756136	GTF2F2	chr13	45694856	+	SMAD9	chr13	37454014	-
intron-intron	ENST00000489878	ENST00000489878		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000489878	ENST00000367109		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000489878	ENST00000367108		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000489878	ENST00000367106		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367109	ENST00000489878		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367109	ENST00000367109		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367109	ENST00000367108		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367109	ENST00000367106		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367108	ENST00000489878		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367108	ENST00000367109		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367108	ENST00000367108		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367108	ENST00000367106		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367106	ENST00000489878		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367106	ENST00000367109		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367106	ENST00000367108		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-intron	ENST00000367106	ENST00000367106		ChiTaRS3.1			CV414816	DYRK3	chr1	206826389	+	DYRK3	chr1	206823873	+
intron-5UTR	ENST00000567134	ENST00000236959		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000567134	ENST00000540518		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000567134	ENST00000435675		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000308588	ENST00000236959		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000308588	ENST00000540518		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000308588	ENST00000435675		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564644	ENST00000236959		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564644	ENST00000540518		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564644	ENST00000435675		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000371091	ENST00000236959		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000371091	ENST00000540518		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000371091	ENST00000435675		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564675	ENST00000236959		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564675	ENST00000540518		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-5UTR	ENST00000564675	ENST00000435675		ChiTaRS3.1			BC007306	SNUPN	chr15	75918632	-	ATIC	chr2	216176838	+
intron-3CDS	ENST00000375400	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000375400	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000375400	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000375400	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000375398	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000375398	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000375398	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000375398	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000355867	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000355867	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000355867	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000355867	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000535393	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000535393	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000535393	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000535393	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000460007	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000460007	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000460007	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000460007	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000538146	ENST00000560626		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3CDS	ENST00000538146	ENST00000558305		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000538146	ENST00000567337		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-intron	ENST00000538146	ENST00000312493		ChiTaRS3.1			BE933156	SVIL	chr10	29811430	+	PEAK1	chr15	77473883	+
intron-3UTR	ENST00000329235	ENST00000283415		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-5UTR	ENST00000329235	ENST00000503252		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-3UTR	ENST00000380291	ENST00000283415		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-5UTR	ENST00000380291	ENST00000503252		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-3UTR	ENST00000479184	ENST00000283415		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-5UTR	ENST00000479184	ENST00000503252		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-3UTR	ENST00000545766	ENST00000283415		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-5UTR	ENST00000545766	ENST00000503252		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-3UTR	ENST00000421527	ENST00000283415		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-5UTR	ENST00000421527	ENST00000503252		ChiTaRS3.1			BM693256	AP1S2	chrX	15845283	+	LPCAT1	chr5	1461951	-
intron-intron	ENST00000465878	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000465878	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000379655	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000379655	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000445690	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000445690	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000421376	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000421376	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000541240	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000541240	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000540079	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000540079	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000543930	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000543930	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000562903	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000562903	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000539578	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000539578	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000566975	ENST00000341500		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000566975	ENST00000302850		ChiTaRS3.1			CV355096	KIFC3	chr16	57806970	+	INSR	chr19	7228036	-
intron-intron	ENST00000561500	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000561500	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000561500	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000561500	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000561500	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000561500	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000561500	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000561500	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000379047	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000379047	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379047	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000320623	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000320623	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000320623	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000379046	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000379046	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000379046	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000439109	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000439109	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000439109	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000462274		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000564043	ENST00000338785		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000451934		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000321219		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000564043	ENST00000339659		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000398960		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000398956		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-intron	ENST00000564043	ENST00000455387		ChiTaRS3.1			BM983726	NQO1	chr16	69744922	+	DYRK1A	chr21	38887379	+
intron-3UTR	ENST00000258301	ENST00000367588		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000258301	ENST00000367587		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000258301	ENST00000461346		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-3UTR	ENST00000469135	ENST00000367588		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000469135	ENST00000367587		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000469135	ENST00000461346		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-3UTR	ENST00000542060	ENST00000367588		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000542060	ENST00000367587		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000542060	ENST00000461346		ChiTaRS3.1			BU742946	STX6	chr1	180920680	-	KIAA1614	chr1	180917302	+
intron-intron	ENST00000375105	ENST00000336915		ChiTaRS3.1			AY358606	PLA2G2D	chr1	20442040	-	SKAP1	chr17	46483648	+
intron-intron	ENST00000375105	ENST00000584924		ChiTaRS3.1			AY358606	PLA2G2D	chr1	20442040	-	SKAP1	chr17	46483648	+
3UTR-3CDS	ENST00000375442	ENST00000322723		ChiTaRS3.1			AI638866	TSPYL2	chrX	53117582	-	NCL	chr2	232320184	+
3UTR-intron	ENST00000493946	ENST00000494753		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
3UTR-intron	ENST00000493946	ENST00000411567		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
3UTR-intron	ENST00000493946	ENST00000276914		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
3UTR-intron	ENST00000493946	ENST00000380465		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
3UTR-intron	ENST00000493946	ENST00000380464		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5UTR-intron	ENST00000539281	ENST00000494753		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5UTR-intron	ENST00000539281	ENST00000411567		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5UTR-intron	ENST00000539281	ENST00000276914		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5UTR-intron	ENST00000539281	ENST00000380465		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5UTR-intron	ENST00000539281	ENST00000380464		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369710	ENST00000494753		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369710	ENST00000411567		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369710	ENST00000276914		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369710	ENST00000380465		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369710	ENST00000380464		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369713	ENST00000494753		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369713	ENST00000411567		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369713	ENST00000276914		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369713	ENST00000380465		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
5CDS-intron	ENST00000369713	ENST00000380464		ChiTaRS3.1			BG314836	GSTO1	chr10	106014951	-	PLIN2	chr9	19116268	-
intron-intron	ENST00000368069	ENST00000308482		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000368069	ENST00000468950		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000368069	ENST00000289175		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000368069	ENST00000244815		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000368069	ENST00000392000		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000241704	ENST00000308482		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000241704	ENST00000468950		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000241704	ENST00000289175		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000241704	ENST00000244815		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-intron	ENST00000241704	ENST00000392000		ChiTaRS3.1			BQ317876	COPA	chr1	160309405	+	LRRFIP1	chr2	238672667	-
intron-3CDS	ENST00000439211	ENST00000353487		ChiTaRS3.1			BQ328186	DHFR	chr5	79945919	+	SPPL3	chr12	121229364	-
intron-3CDS	ENST00000505337	ENST00000353487		ChiTaRS3.1			BQ328186	DHFR	chr5	79945919	+	SPPL3	chr12	121229364	-
intron-3CDS	ENST00000511032	ENST00000353487		ChiTaRS3.1			BQ328186	DHFR	chr5	79945919	+	SPPL3	chr12	121229364	-
intron-3CDS	ENST00000504396	ENST00000353487		ChiTaRS3.1			BQ328186	DHFR	chr5	79945919	+	SPPL3	chr12	121229364	-
intron-3CDS	ENST00000513048	ENST00000353487		ChiTaRS3.1			BQ328186	DHFR	chr5	79945919	+	SPPL3	chr12	121229364	-
Frame-shit	ENST00000358024	ENST00000358024		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000358024	ENST00000545499		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000358024	ENST00000495538		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000358024	ENST00000330675		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000358024	ENST00000329800		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000545499	ENST00000358024		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000545499	ENST00000545499		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000545499	ENST00000495538		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000545499	ENST00000330675		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000545499	ENST00000329800		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3CDS	ENST00000495538	ENST00000358024		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3CDS	ENST00000495538	ENST00000545499		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3UTR	ENST00000495538	ENST00000495538		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3UTR	ENST00000495538	ENST00000330675		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3UTR	ENST00000495538	ENST00000329800		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000330675	ENST00000358024		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000330675	ENST00000545499		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000330675	ENST00000495538		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000330675	ENST00000330675		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000330675	ENST00000329800		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000329800	ENST00000358024		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
Frame-shit	ENST00000329800	ENST00000545499		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000329800	ENST00000495538		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000329800	ENST00000330675		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
5CDS-3UTR	ENST00000329800	ENST00000329800		ChiTaRS3.1			BC053876	TMCC2	chr1	205241069	+	TMCC2	chr1	205238497	+
3UTR-3UTR	ENST00000369851	ENST00000369851		ChiTaRS3.1			H87926	GNAI3	chr1	110135903	-	GNAI3	chr1	110135929	+
In-frame	ENST00000262077	ENST00000262077		ChiTaRS3.1			AA281956	NUP153	chr6	17665469	-	NUP153	chr6	17669728	+
In-frame	ENST00000262077	ENST00000537253		ChiTaRS3.1			AA281956	NUP153	chr6	17665469	-	NUP153	chr6	17669728	+
In-frame	ENST00000537253	ENST00000262077		ChiTaRS3.1			AA281956	NUP153	chr6	17665469	-	NUP153	chr6	17669728	+
In-frame	ENST00000537253	ENST00000537253		ChiTaRS3.1			AA281956	NUP153	chr6	17665469	-	NUP153	chr6	17669728	+
intron-intron	ENST00000259486	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000259486	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000427067	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000427067	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000522167	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000522167	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000522826	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000522826	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000075322	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000075322	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000518109	ENST00000266517		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-intron	ENST00000518109	ENST00000335148		ChiTaRS3.1			BE061136	ENPP2	chr8	120609938	-	ETNK1	chr12	22787799	+
intron-3CDS	ENST00000545844	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000545844	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000545844	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000545844	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000545844	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000567887	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000567887	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000567887	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000567887	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000567887	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000372915	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000372915	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000372915	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000372915	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000372915	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000361689	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000361689	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000361689	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000361689	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000361689	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000539005	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000539005	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000539005	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000539005	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000539005	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000317713	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000317713	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000317713	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000317713	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000317713	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000564288	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000564288	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000564288	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000564288	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000564288	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000289893	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000289893	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000289893	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000289893	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000289893	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000536367	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000536367	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000536367	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000536367	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000536367	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000484793	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000484793	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000484793	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000484793	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000484793	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000602421	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000602421	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000602421	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000602421	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000602421	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000476350	ENST00000372324		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000476350	ENST00000434555		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000476350	ENST00000356836		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-3CDS	ENST00000476350	ENST00000309519		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000476350	ENST00000481924		ChiTaRS3.1			M78136	MACF1	chr1	39710618	-	B4GALT2	chr1	44447038	+
intron-intron	ENST00000301488	ENST00000390548		ChiTaRS3.1			BP421316	CDK2AP2	chr11	67274370	+	IGHG1	chr14	106174211	-
intron-intron	ENST00000531506	ENST00000390548		ChiTaRS3.1			BP421316	CDK2AP2	chr11	67274370	+	IGHG1	chr14	106174211	-
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AY839735	KMT2A	chr11	118354553	+	MLLT1	chr19	6275813	-
intron-3UTR	ENST00000390168	ENST00000368921		ChiTaRS3.1			AI655536	H19	chr11	2016466	+	MLLT11	chr1	151040070	-
In-frame	ENST00000403681	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000541363	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000393577	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000393578	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000425208	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000536545	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
In-frame	ENST00000354636	ENST00000286574		ChiTaRS3.1			EU263623	HMGA2	chr12	66232350	+	WIF1	chr12	65445251	-
intron-3UTR	ENST00000394464	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000394464	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000394464	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394464	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000343796	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000343796	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000343796	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000343796	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000415690	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000415690	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000415690	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000415690	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000424646	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000424646	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000424646	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000424646	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504572	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504572	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504572	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504572	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000394466	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000394466	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000394466	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000394466	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000231509	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000231509	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000231509	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000231509	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000416954	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000416954	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000416954	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000416954	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000503201	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000503201	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000503201	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000503201	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504336	ENST00000394464		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504336	ENST00000343796		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000415690		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-3UTR	ENST00000504336	ENST00000424646		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000504572		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000394466		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000231509		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000416954		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000503201		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000504336	ENST00000504336		ChiTaRS3.1			BU679196	NR3C1	chr5	142659526	+	NR3C1	chr5	142659634	-
intron-intron	ENST00000397977	ENST00000397977		ChiTaRS3.1			DB329146	INTS10	chr8	19703458	-	INTS10	chr8	19708057	-
intron-intron	ENST00000397977	ENST00000521758		ChiTaRS3.1			DB329146	INTS10	chr8	19703458	-	INTS10	chr8	19708057	-
intron-intron	ENST00000521758	ENST00000397977		ChiTaRS3.1			DB329146	INTS10	chr8	19703458	-	INTS10	chr8	19708057	-
intron-intron	ENST00000521758	ENST00000521758		ChiTaRS3.1			DB329146	INTS10	chr8	19703458	-	INTS10	chr8	19708057	-
Frame-shit	ENST00000268171	ENST00000378330		ChiTaRS3.1			BF823726	FURIN	chr15	91420238	+	ANKRD11	chr16	89348578	-
Frame-shit	ENST00000268171	ENST00000301030		ChiTaRS3.1			BF823726	FURIN	chr15	91420238	+	ANKRD11	chr16	89348578	-
5CDS-intron	ENST00000268171	ENST00000563291		ChiTaRS3.1			BF823726	FURIN	chr15	91420238	+	ANKRD11	chr16	89348578	-
5CDS-intron	ENST00000268171	ENST00000567736		ChiTaRS3.1			BF823726	FURIN	chr15	91420238	+	ANKRD11	chr16	89348578	-
intron-3CDS	ENST00000221566	ENST00000372422		ChiTaRS3.1			BM729296	SGTA	chr19	2762041	-	YIPF3	chr6	43481371	-
intron-3CDS	ENST00000221566	ENST00000506469		ChiTaRS3.1			BM729296	SGTA	chr19	2762041	-	YIPF3	chr6	43481371	-
intron-3CDS	ENST00000586711	ENST00000372422		ChiTaRS3.1			BM729296	SGTA	chr19	2762041	-	YIPF3	chr6	43481371	-
intron-3CDS	ENST00000586711	ENST00000506469		ChiTaRS3.1			BM729296	SGTA	chr19	2762041	-	YIPF3	chr6	43481371	-
3UTR-3UTR	ENST00000260356	ENST00000260356		ChiTaRS3.1			AA826156	THBS1	chr15	39889183	+	THBS1	chr15	39889123	-
intron-3UTR	ENST00000415912	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000415912	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000415912	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000415912	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000415912	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000415912	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-3UTR	ENST00000357071	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000357071	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000357071	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000357071	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000357071	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000357071	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-3UTR	ENST00000374893	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000374893	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000374893	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000374893	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000374893	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000374893	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-3UTR	ENST00000436918	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000436918	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000436918	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000436918	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000436918	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000436918	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-3UTR	ENST00000264205	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000264205	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000264205	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000264205	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000264205	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000264205	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-3UTR	ENST00000528294	ENST00000415912		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000528294	ENST00000357071		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000528294	ENST00000374893		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000528294	ENST00000436918		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000528294	ENST00000264205		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000528294	ENST00000528294		ChiTaRS3.1			AA864426	ECE1	chr1	21545462	+	ECE1	chr1	21544280	+
intron-intron	ENST00000327495	ENST00000187910		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000402603		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000292125		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000601833		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000187910		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000402603		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000292125		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000601833		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000187910		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000402603		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000292125		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000601833		ChiTaRS3.1			BE928986	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
3UTR-3UTR	ENST00000369304	ENST00000398532		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
3UTR-intron	ENST00000369304	ENST00000577454		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
3UTR-intron	ENST00000369304	ENST00000578648		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
3UTR-intron	ENST00000369304	ENST00000579565		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-3UTR	ENST00000539363	ENST00000398532		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000539363	ENST00000577454		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000539363	ENST00000578648		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000539363	ENST00000579565		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-3UTR	ENST00000538811	ENST00000398532		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000538811	ENST00000577454		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000538811	ENST00000578648		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000538811	ENST00000579565		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-3UTR	ENST00000481236	ENST00000398532		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000481236	ENST00000577454		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000481236	ENST00000578648		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000481236	ENST00000579565		ChiTaRS3.1			BQ345926	ITGA10	chr1	145543271	+	MSL1	chr17	38292142	-
intron-intron	ENST00000439951	ENST00000439951		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000313733		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000358053		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000471817		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000439951		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000313733		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000358053		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000471817		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000439951		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000313733		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000358053		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000471817		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000439951		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000313733		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000358053		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000471817		ChiTaRS3.1			CV393366	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-3UTR	ENST00000474267	ENST00000474267		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000474267	ENST00000264634		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000474267	ENST00000493406		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000474267	ENST00000497027		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000264634	ENST00000474267		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000264634	ENST00000264634		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000264634	ENST00000493406		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000264634	ENST00000497027		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000493406	ENST00000474267		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000493406	ENST00000264634		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000493406	ENST00000493406		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000493406	ENST00000497027		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000497027	ENST00000474267		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3UTR	ENST00000497027	ENST00000264634		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000497027	ENST00000493406		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-intron	ENST00000497027	ENST00000497027		ChiTaRS3.1			AA714996	WNT5A	chr3	55500232	-	WNT5A	chr3	55500307	+
intron-3CDS	ENST00000389048	ENST00000254719		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-3UTR	ENST00000389048	ENST00000573924		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-3CDS	ENST00000431873	ENST00000254719		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-3UTR	ENST00000431873	ENST00000573924		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-3CDS	ENST00000498037	ENST00000254719		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-3UTR	ENST00000498037	ENST00000573924		ChiTaRS3.1			BF945806	ALK	chr2	29478958	-	RPA1	chr17	1779045	+
intron-intron	ENST00000329957	ENST00000329957		ChiTaRS3.1			AW605506	MOB2	chr11	1775108	+	MOB2	chr11	1774883	-
intron-intron	ENST00000329957	ENST00000526462		ChiTaRS3.1			AW605506	MOB2	chr11	1775108	+	MOB2	chr11	1774883	-
intron-intron	ENST00000526462	ENST00000329957		ChiTaRS3.1			AW605506	MOB2	chr11	1775108	+	MOB2	chr11	1774883	-
intron-intron	ENST00000526462	ENST00000526462		ChiTaRS3.1			AW605506	MOB2	chr11	1775108	+	MOB2	chr11	1774883	-
intron-3UTR	ENST00000306270	ENST00000306270		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000306270	ENST00000503631		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000306270	ENST00000510291		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-3UTR	ENST00000503631	ENST00000306270		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000503631	ENST00000503631		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000503631	ENST00000510291		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-3UTR	ENST00000510291	ENST00000306270		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000510291	ENST00000503631		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000510291	ENST00000510291		ChiTaRS3.1			BE617876	IBTK	chr6	82880526	+	IBTK	chr6	82880616	-
intron-intron	ENST00000261708	ENST00000384891		ChiTaRS3.1			BF149116	UTP6	chr17	30228711	+	MIR205HG	chr1	209602184	+
intron-intron	ENST00000490218	ENST00000384891		ChiTaRS3.1			BF149116	UTP6	chr17	30228711	+	MIR205HG	chr1	209602184	+
intron-intron	ENST00000376842	ENST00000370915		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000376842	ENST00000253001		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000376842	ENST00000279068		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-intron	ENST00000327705	ENST00000370915		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000327705	ENST00000253001		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000327705	ENST00000279068		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-intron	ENST00000376841	ENST00000370915		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000376841	ENST00000253001		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000376841	ENST00000279068		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-intron	ENST00000515271	ENST00000370915		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000515271	ENST00000253001		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000515271	ENST00000279068		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-intron	ENST00000511589	ENST00000370915		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000511589	ENST00000253001		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-3UTR	ENST00000511589	ENST00000279068		ChiTaRS3.1			BF919146	BTNL9	chr5	180469231	+	LSM14B	chr20	60709217	+
intron-intron	ENST00000517298	ENST00000517298		ChiTaRS3.1			BE162396	CA13	chr8	86276224	+	CA13	chr8	86275882	+
intron-intron	ENST00000517298	ENST00000321764		ChiTaRS3.1			BE162396	CA13	chr8	86276224	+	CA13	chr8	86275882	+
intron-intron	ENST00000321764	ENST00000517298		ChiTaRS3.1			BE162396	CA13	chr8	86276224	+	CA13	chr8	86275882	+
intron-intron	ENST00000321764	ENST00000321764		ChiTaRS3.1			BE162396	CA13	chr8	86276224	+	CA13	chr8	86275882	+
intron-intron	ENST00000287878	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000287878	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000287878	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000287878	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000287878	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000287878	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000418337	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000433631	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000492843	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000392801	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000287878		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000418337		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000433631		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000492843		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000392801		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000461529	ENST00000461529		ChiTaRS3.1			BP373596	PRKAG2	chr7	151257461	-	PRKAG2	chr7	151269630	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807686	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
3UTR-3CDS	ENST00000369317	ENST00000319410		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
3UTR-3CDS	ENST00000369317	ENST00000302445		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
3UTR-intron	ENST00000369317	ENST00000568378		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
3UTR-3CDS	ENST00000475171	ENST00000319410		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
3UTR-3CDS	ENST00000475171	ENST00000302445		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
3UTR-intron	ENST00000475171	ENST00000568378		ChiTaRS3.1			BQ375676	TXNIP	chr1	145441790	-	KARS	chr16	75668166	-
intron-3UTR	ENST00000225394	ENST00000330909		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000225394	ENST00000402939		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000225394	ENST00000483466		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000225394	ENST00000497477		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000225394	ENST00000470990		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000394869	ENST00000330909		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000394869	ENST00000402939		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000394869	ENST00000483466		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000394869	ENST00000497477		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000394869	ENST00000470990		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000581348	ENST00000330909		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000581348	ENST00000402939		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000581348	ENST00000483466		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000581348	ENST00000497477		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000581348	ENST00000470990		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000579937	ENST00000330909		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-3UTR	ENST00000579937	ENST00000402939		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000579937	ENST00000483466		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000579937	ENST00000497477		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
intron-intron	ENST00000579937	ENST00000470990		ChiTaRS3.1			AL110296	GIT1	chr17	27901181	-	MAGI1	chr3	65342493	-
3UTR-3UTR	ENST00000211314	ENST00000211314		ChiTaRS3.1			AW969676	TMEM14A	chr6	52551245	+	TMEM14A	chr6	52551374	-
intron-intron	ENST00000388890	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000264057		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000409813		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000489613		ChiTaRS3.1			BM151326	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-3CDS	ENST00000402696	ENST00000295897		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000415165		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000503124		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000509063		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000402696	ENST00000401494		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000402696	ENST00000505649		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000295897		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000415165		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000503124		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000509063		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000264998	ENST00000401494		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000264998	ENST00000505649		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000295897		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000415165		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000503124		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000509063		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3CDS	ENST00000475382	ENST00000401494		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-3UTR	ENST00000475382	ENST00000505649		ChiTaRS3.1			AI133116	TF	chr3	133490670	-	ALB	chr4	74279289	+
intron-intron	ENST00000370010	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370010	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370010	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370010	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370010	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370010	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000370014	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000447266	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000541192	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000327284	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000370010		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000370014		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000447266		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000541192		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000327284		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-intron	ENST00000436928	ENST00000436928		ChiTaRS3.1			BF679506	SENP6	chr6	76415198	-	SENP6	chr6	76415711	-
intron-3CDS	ENST00000370483	ENST00000533632		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000370483	ENST00000528230		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000370483	ENST00000525303		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000370483	ENST00000434101		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000370483	ENST00000359005		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000370483	ENST00000533058		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000370483	ENST00000526141		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000016171	ENST00000533632		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000016171	ENST00000528230		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000016171	ENST00000525303		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000016171	ENST00000434101		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000016171	ENST00000359005		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000016171	ENST00000533058		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000016171	ENST00000526141		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000497381	ENST00000533632		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000497381	ENST00000528230		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000497381	ENST00000525303		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-3CDS	ENST00000497381	ENST00000434101		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000497381	ENST00000359005		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000497381	ENST00000533058		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
intron-intron	ENST00000497381	ENST00000526141		ChiTaRS3.1			BF886586	COX15	chr10	101486876	-	TRAPPC4	chr11	118892467	+
5CDS-5UTR	ENST00000369244	ENST00000498508		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-5UTR	ENST00000369244	ENST00000366958		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-5UTR	ENST00000369244	ENST00000435016		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-intron	ENST00000369244	ENST00000261454		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-intron	ENST00000369244	ENST00000607726		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-5UTR	ENST00000229971	ENST00000498508		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-5UTR	ENST00000229971	ENST00000366958		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-5UTR	ENST00000229971	ENST00000435016		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-intron	ENST00000229971	ENST00000261454		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
5CDS-intron	ENST00000229971	ENST00000607726		ChiTaRS3.1			AK290176	FBXL4	chr6	99347143	-	PROX1	chr1	214169810	+
intron-3UTR	ENST00000518857	ENST00000518857		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000395862		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000521514		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000518857	ENST00000518738		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000518857		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000395862		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000521514		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000395862	ENST00000518738		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000518857		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000395862		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000521514		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-3UTR	ENST00000521514	ENST00000518738		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000518857		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000395862		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000521514		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
3UTR-3UTR	ENST00000518738	ENST00000518738		ChiTaRS3.1			BM983326	ATP6V1C1	chr8	104081594	-	ATP6V1C1	chr8	104081265	+
intron-intron	ENST00000556679	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000556679	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000456570	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000477310	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000425368	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000497841	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000417261	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000427888	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000459734	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000455591	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000433503	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000474621	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000424727	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000436692	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000473139	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000399981	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000419920	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000465211	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000375455	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000489605	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000426239	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
5CDS-intron	ENST00000419411	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000437198		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000420015		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000341484		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000539279		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000460958	ENST00000566021		ChiTaRS3.1			AF130116	CFB	chr6	3252074	+	PARN	chr16	14565880	-
intron-intron	ENST00000547956	ENST00000547956		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000547956	ENST00000549260		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000547956	ENST00000303694		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000547956	ENST00000546689		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000547956	ENST00000550711		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000549260	ENST00000547956		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000549260	ENST00000549260		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000549260	ENST00000303694		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000549260	ENST00000546689		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000549260	ENST00000550711		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000303694	ENST00000547956		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000303694	ENST00000549260		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000303694	ENST00000303694		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000303694	ENST00000546689		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000303694	ENST00000550711		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000546689	ENST00000547956		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000546689	ENST00000549260		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000546689	ENST00000303694		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000546689	ENST00000546689		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000546689	ENST00000550711		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000550711	ENST00000547956		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000550711	ENST00000549260		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000550711	ENST00000303694		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000550711	ENST00000546689		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-intron	ENST00000550711	ENST00000550711		ChiTaRS3.1			BF508216	CHST11	chr12	104893920	-	CHST11	chr12	104895225	-
intron-3UTR	ENST00000585421	ENST00000585421		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000585421	ENST00000536189		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000585421	ENST00000262768		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000585421	ENST00000586057		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000536189	ENST00000585421		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000536189	ENST00000536189		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000536189	ENST00000262768		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000536189	ENST00000586057		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000262768	ENST00000585421		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000262768	ENST00000536189		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000262768	ENST00000262768		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000262768	ENST00000586057		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000586057	ENST00000585421		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000586057	ENST00000536189		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000586057	ENST00000262768		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000586057	ENST00000586057		ChiTaRS3.1			BG938976	TIMP2	chr17	76849075	-	TIMP2	chr17	76849209	+
intron-3UTR	ENST00000370489	ENST00000283415		ChiTaRS3.1			AK123516	ENTPD7	chr10	101468607	+	LPCAT1	chr5	1461599	-
intron-5UTR	ENST00000370489	ENST00000503252		ChiTaRS3.1			AK123516	ENTPD7	chr10	101468607	+	LPCAT1	chr5	1461599	-
3UTR-3CDS	ENST00000513761	ENST00000575270		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
3UTR-3CDS	ENST00000513761	ENST00000349223		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
3UTR-3CDS	ENST00000513761	ENST00000329524		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
3UTR-3CDS	ENST00000513761	ENST00000346183		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
3UTR-3UTR	ENST00000513761	ENST00000535127		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000347613	ENST00000575270		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000347613	ENST00000349223		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000347613	ENST00000329524		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000347613	ENST00000346183		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3UTR	ENST00000347613	ENST00000535127		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000360642	ENST00000575270		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000360642	ENST00000349223		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000360642	ENST00000329524		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000360642	ENST00000346183		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3UTR	ENST00000360642	ENST00000535127		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000504131	ENST00000575270		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000504131	ENST00000349223		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000504131	ENST00000329524		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000504131	ENST00000346183		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3UTR	ENST00000504131	ENST00000535127		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000506924	ENST00000575270		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000506924	ENST00000349223		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000506924	ENST00000329524		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000506924	ENST00000346183		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3UTR	ENST00000506924	ENST00000535127		ChiTaRS3.1			AI917646	CLCN3	chr4	170643791	-	NFATC3	chr16	68156113	-
intron-3CDS	ENST00000370577	ENST00000377411		ChiTaRS3.1			BE171366	LMBRD1	chr6	70481466	+	GPR157	chr1	9164675	-
intron-3CDS	ENST00000370577	ENST00000414642		ChiTaRS3.1			BE171366	LMBRD1	chr6	70481466	+	GPR157	chr1	9164675	-
intron-3CDS	ENST00000370570	ENST00000377411		ChiTaRS3.1			BE171366	LMBRD1	chr6	70481466	+	GPR157	chr1	9164675	-
intron-3CDS	ENST00000370570	ENST00000414642		ChiTaRS3.1			BE171366	LMBRD1	chr6	70481466	+	GPR157	chr1	9164675	-
intron-3CDS	ENST00000310300	ENST00000508802		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3CDS	ENST00000310300	ENST00000261439		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-intron	ENST00000310300	ENST00000402522		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3UTR	ENST00000310300	ENST00000407365		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3CDS	ENST00000497245	ENST00000508802		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3CDS	ENST00000497245	ENST00000261439		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-intron	ENST00000497245	ENST00000402522		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3UTR	ENST00000497245	ENST00000407365		ChiTaRS3.1			BE709716	LRCH4	chr7	100178630	-	TBC1D1	chr4	38117401	-
intron-3CDS	ENST00000511689	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000511689	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000511689	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000511689	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000511689	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-3CDS	ENST00000512507	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000512507	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000512507	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000512507	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000512507	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-3CDS	ENST00000304332	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000304332	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000304332	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000304332	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000304332	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-3CDS	ENST00000312469	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000312469	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000312469	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000312469	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000312469	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-3CDS	ENST00000423969	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000423969	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000423969	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000423969	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000423969	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-3CDS	ENST00000510038	ENST00000521891		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000510038	ENST00000517683		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000510038	ENST00000050961		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000510038	ENST00000455469		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000510038	ENST00000518282		ChiTaRS3.1			CB217196	H2AFY	chr5	134688713	-	ZFHX4	chr8	77764869	+
intron-intron	ENST00000344771	ENST00000344771		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000344771	ENST00000395059		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000344771	ENST00000262518		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000395059	ENST00000344771		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000395059	ENST00000395059		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000395059	ENST00000262518		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000262518	ENST00000344771		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000262518	ENST00000395059		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-intron	ENST00000262518	ENST00000262518		ChiTaRS3.1			BQ361746	SRCAP	chr16	30740286	-	SRCAP	chr16	30740894	-
intron-3UTR	ENST00000480912	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000480912	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000395728	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000395728	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000375528	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000375528	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000375530	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000375530	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000375537	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000375537	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000498185	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000498185	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000415323	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000415323	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000450323	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000450323	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000440987	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000440987	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000421926	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000421926	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000551865	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000551865	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000497104	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000497104	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000436403	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000436403	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000443951	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000443951	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000420874	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000420874	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000450075	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000450075	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000552339	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000552339	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000497361	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000497361	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000420930	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000420930	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000428442	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000428442	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000450229	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000450229	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000429506	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000429506	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000547244	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000547244	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000467139	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000467139	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000446303	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000446303	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000427405	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000427405	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000454705	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000454705	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000420336	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000420336	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000546877	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000546877	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000400006	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000400006	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000469681	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000469681	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000400008	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000400008	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000383372	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000383372	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000383373	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000383373	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000550866	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000550866	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000425250	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000425250	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3UTR	ENST00000487513	ENST00000309993		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-intron	ENST00000487513	ENST00000434835		ChiTaRS3.1			AW361916	EHMT2	chr6	3181217	-	MSL2	chr3	135869329	+
intron-3CDS	ENST00000344157	ENST00000261973		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000344157	ENST00000540173		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000344157	ENST00000527432		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000344157	ENST00000525321		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000344157	ENST00000526754		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000344157	ENST00000532483		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-3CDS	ENST00000355665	ENST00000261973		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000355665	ENST00000540173		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000355665	ENST00000527432		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000355665	ENST00000525321		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000355665	ENST00000526754		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000355665	ENST00000532483		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-3CDS	ENST00000579690	ENST00000261973		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000579690	ENST00000540173		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000579690	ENST00000527432		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000579690	ENST00000525321		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000579690	ENST00000526754		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000579690	ENST00000532483		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
Frame-shit	ENST00000552105	ENST00000261973		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000552105	ENST00000540173		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000552105	ENST00000527432		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000552105	ENST00000525321		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000552105	ENST00000526754		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000552105	ENST00000532483		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
Frame-shit	ENST00000550485	ENST00000261973		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000550485	ENST00000540173		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000550485	ENST00000527432		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000550485	ENST00000525321		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000550485	ENST00000526754		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
5CDS-intron	ENST00000550485	ENST00000532483		ChiTaRS3.1			CN350716	YTHDC1	chr4	33924	-	RBM25	chr14	73572681	+
intron-intron	ENST00000441174	ENST00000441174		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000441174	ENST00000375005		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000441174	ENST00000438907		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000375005	ENST00000441174		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000375005	ENST00000375005		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000375005	ENST00000438907		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000438907	ENST00000441174		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000438907	ENST00000375005		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
intron-intron	ENST00000438907	ENST00000438907		ChiTaRS3.1			AI963686	TBRG1	chr11	124493912	-	TBRG1	chr11	124493621	+
5CDS-intron	ENST00000413040	ENST00000462832		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000413040	ENST00000379579		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000413040	ENST00000334056		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000568733	ENST00000462832		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000568733	ENST00000379579		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000568733	ENST00000334056		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000566856	ENST00000462832		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000566856	ENST00000379579		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000566856	ENST00000334056		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000355851	ENST00000462832		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000355851	ENST00000379579		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
5CDS-intron	ENST00000355851	ENST00000334056		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
3UTR-intron	ENST00000477666	ENST00000462832		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
3UTR-intron	ENST00000477666	ENST00000379579		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
3UTR-intron	ENST00000477666	ENST00000334056		ChiTaRS3.1			AA393076	NUB1	chr7	151053000	+	SPDYA	chr2	29066604	+
intron-3UTR	ENST00000361568	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000361568	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000361568	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000361568	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000361568	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000395523	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000395523	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000395523	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000395523	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000395523	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000324816	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000324816	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000324816	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000324816	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000324816	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000445576	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000445576	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445576	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445576	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445576	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000437001	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000437001	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000437001	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000437001	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000437001	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000375137	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000375137	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375137	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375137	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375137	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000375143	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000375143	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375143	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375143	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000375143	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000493548	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000493548	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000493548	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000493548	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000493548	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000412651	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000412651	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000412651	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000412651	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000412651	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000457509	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000457509	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000457509	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000457509	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000457509	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000550796	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000550796	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550796	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550796	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550796	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547565	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547565	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547565	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547565	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547565	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000440533	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000440533	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440533	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440533	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440533	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000445462	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000445462	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445462	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445462	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000445462	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000486923	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000486923	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000486923	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000486923	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000486923	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000550232	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000550232	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550232	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550232	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000550232	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000383152	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000383152	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383152	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383152	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383152	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399665	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399665	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399665	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399665	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399665	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547646	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547646	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547646	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547646	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547646	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000551703	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000551703	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551703	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551703	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551703	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399662	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399662	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399662	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399662	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399662	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399660	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399660	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399660	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399660	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399660	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000480985	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000480985	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000480985	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000480985	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000480985	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000467040	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000467040	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000467040	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000467040	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000467040	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000487203	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000487203	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000487203	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000487203	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000487203	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000423347	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000423347	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000423347	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000423347	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000423347	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000440507	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000440507	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440507	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440507	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000440507	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000551222	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000551222	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551222	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551222	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000551222	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000548089	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000548089	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000548089	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000548089	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000548089	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000424353	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000424353	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000424353	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000424353	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000424353	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000452304	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000452304	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452304	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452304	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452304	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000459936	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000459936	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000459936	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000459936	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000459936	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000549741	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000549741	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549741	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549741	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549741	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000383301	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000383301	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383301	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383301	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000383301	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399860	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399860	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399860	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399860	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399860	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000546871	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000546871	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000546871	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000546871	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000546871	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399859	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399859	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399859	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399859	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399859	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399856	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000399856	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399856	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399856	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000399856	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000414356	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000414356	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000414356	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000414356	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000414356	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000452562	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000452562	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452562	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452562	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000452562	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000552922	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000552922	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552922	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552922	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552922	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000549544	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000549544	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549544	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549544	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000549544	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000420778	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000420778	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000420778	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000420778	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000420778	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000427556	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000427556	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000427556	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000427556	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000427556	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000483049	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000483049	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000483049	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000483049	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000483049	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547891	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547891	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547891	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547891	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547891	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000525601	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000525601	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000525601	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000525601	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000525601	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547508	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547508	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547508	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547508	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547508	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000422988	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000422988	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000422988	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000422988	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000422988	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547309	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547309	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547309	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547309	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547309	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000552076	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000552076	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552076	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552076	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000552076	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000465052	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000465052	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000465052	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000465052	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000465052	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000438385	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000438385	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000438385	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000438385	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000438385	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000456497	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000456497	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000456497	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000456497	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000456497	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547558	ENST00000264071		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-3UTR	ENST00000547558	ENST00000540257		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547558	ENST00000601152		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547558	ENST00000598006		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
intron-intron	ENST00000547558	ENST00000596926		ChiTaRS3.1			BF933096	PPT2	chr6	3397973	+	TUBB4A	chr19	6495065	+
3UTR-intron	ENST00000331595	ENST00000608999		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000336894		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000480184		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000356764		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000290419		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000391959		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000331595	ENST00000367270		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000608999		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000336894		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000480184		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000356764		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000290419		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000391959		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
3UTR-intron	ENST00000480756	ENST00000367270		ChiTaRS3.1			BQ183196	BGN	chrX	152774467	-	PPP1R12B	chr1	202469394	-
intron-5UTR	ENST00000337225	ENST00000337225		ChiTaRS3.1			DN989556	CXCL14	chr5	134910340	+	CXCL14	chr5	134914511	-
intron-5UTR	ENST00000337225	ENST00000512158		ChiTaRS3.1			DN989556	CXCL14	chr5	134910340	+	CXCL14	chr5	134914511	-
intron-5UTR	ENST00000512158	ENST00000337225		ChiTaRS3.1			DN989556	CXCL14	chr5	134910340	+	CXCL14	chr5	134914511	-
intron-5UTR	ENST00000512158	ENST00000512158		ChiTaRS3.1			DN989556	CXCL14	chr5	134910340	+	CXCL14	chr5	134914511	-
intron-intron	ENST00000455332	ENST00000303015		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000455332	ENST00000520439		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000455332	ENST00000523477		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000260187	ENST00000303015		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000260187	ENST00000520439		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000260187	ENST00000523477		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000525735	ENST00000303015		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000525735	ENST00000520439		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000525735	ENST00000523477		ChiTaRS3.1			AL162006	USP2	chr11	119236656	-	KCNK9	chr8	140672040	+
intron-intron	ENST00000347401	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000347401	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000353578	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000353578	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000295550	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000295550	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000472056	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000472056	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000409809	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000409809	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000346358	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000346358	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000392004	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000392004	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000392003	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000392003	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000473258	ENST00000487143		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000473258	ENST00000355999		ChiTaRS3.1			BQ330916	COL6A3	chr2	238266015	+	STK39	chr2	169068985	+
intron-intron	ENST00000448662	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000448662	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000431808	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000284776	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000437304	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000319471	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000449407	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000355634	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000393528	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000418609	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000448662		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000431808		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000284776		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000437304		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000319471		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000449407		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000355634		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000393528		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000418609		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-intron	ENST00000498125	ENST00000498125		ChiTaRS3.1			CN412616	SORBS2	chr4	186571028	+	SORBS2	chr4	186571555	-
intron-5UTR	ENST00000366603	ENST00000295897		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000366603	ENST00000415165		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000366603	ENST00000503124		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000366603	ENST00000509063		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000366603	ENST00000401494		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000366603	ENST00000505649		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000264183	ENST00000295897		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000264183	ENST00000415165		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000264183	ENST00000503124		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000264183	ENST00000509063		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000264183	ENST00000401494		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000264183	ENST00000505649		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000349213	ENST00000295897		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000349213	ENST00000415165		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000349213	ENST00000503124		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000349213	ENST00000509063		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000349213	ENST00000401494		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000349213	ENST00000505649		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000494543	ENST00000295897		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-5UTR	ENST00000494543	ENST00000415165		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000494543	ENST00000503124		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000494543	ENST00000509063		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000494543	ENST00000401494		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000494543	ENST00000505649		ChiTaRS3.1			AU120466	ARID4B	chr1	235456198	-	ALB	chr4	74270005	+
intron-intron	ENST00000356860	ENST00000356860		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000356253		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000423588		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000464354		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356860	ENST00000535308		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000356860		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000356253		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000423588		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000464354		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000356253	ENST00000535308		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000356860		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000356253		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000423588		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000464354		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000423588	ENST00000535308		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000356860		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000356253		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000423588		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000464354		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000464354	ENST00000535308		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000356860		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000356253		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000423588		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000464354		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
intron-intron	ENST00000535308	ENST00000535308		ChiTaRS3.1			CV320186	CACNA2D1	chr7	81898337	+	CACNA2D1	chr7	81898213	-
3UTR-3UTR	ENST00000322611	ENST00000322611		ChiTaRS3.1			BM979146	BASP1	chr5	17276379	-	BASP1	chr5	17276276	+
intron-intron	ENST00000479481	ENST00000479481		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000479481	ENST00000370992		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000479481	ENST00000536831		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000479481	ENST00000315563		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000479481	ENST00000414986		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000370992	ENST00000479481		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000370992	ENST00000370992		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000370992	ENST00000536831		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000370992	ENST00000315563		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000370992	ENST00000414986		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000536831	ENST00000479481		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000536831	ENST00000370992		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000536831	ENST00000536831		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000536831	ENST00000315563		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000536831	ENST00000414986		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000315563	ENST00000479481		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000315563	ENST00000370992		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000315563	ENST00000536831		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000315563	ENST00000315563		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000315563	ENST00000414986		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000414986	ENST00000479481		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000414986	ENST00000370992		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000414986	ENST00000536831		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000414986	ENST00000315563		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-intron	ENST00000414986	ENST00000414986		ChiTaRS3.1			BM904976	RRP12	chr10	99134715	-	RRP12	chr10	99135413	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766266	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766266	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3UTR	ENST00000258955	ENST00000258955		ChiTaRS3.1			AA345976	RSAD1	chr17	48562893	+	RSAD1	chr17	48562463	+
intron-3CDS	ENST00000558939	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558939	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558939	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558939	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558939	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000442299	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000442299	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000442299	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000442299	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000442299	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000317509	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000317509	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000317509	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000317509	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000317509	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000560589	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560589	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560589	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560589	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560589	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000559929	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559929	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559929	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559929	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559929	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000559048	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559048	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559048	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559048	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559048	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000560939	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560939	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560939	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560939	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000560939	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000557997	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557997	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557997	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557997	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557997	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000539550	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000539550	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000539550	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000539550	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000539550	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000558201	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558201	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558201	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558201	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558201	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000440567	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000440567	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000440567	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000440567	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000440567	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000559191	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559191	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559191	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559191	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559191	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000558379	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558379	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558379	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558379	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000558379	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000557907	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557907	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557907	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557907	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000557907	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000451782	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000451782	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000451782	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000451782	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000451782	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-3CDS	ENST00000559574	ENST00000409794		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559574	ENST00000378550		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559574	ENST00000425673		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559574	ENST00000458508		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000559574	ENST00000409797		ChiTaRS3.1			BF805406	TLE3	chr15	70362472	+	PLEKHG2	chr19	39913790	-
intron-intron	ENST00000563679	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000563679	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000563679	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000563679	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000325823	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000325823	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000325823	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000325823	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000447912	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000447912	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000447912	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000447912	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000535621	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000535621	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000535621	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000535621	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000455313	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000455313	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000455313	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000455313	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000396410	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000396410	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000396410	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000396410	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000569715	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000569715	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000569715	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
3UTR-intron	ENST00000569715	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000450288	ENST00000570081		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000450288	ENST00000260383		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000450288	ENST00000564079		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
intron-intron	ENST00000450288	ENST00000399460		ChiTaRS3.1			AW893816	PDXDC1	chr16	15130900	+	TUBGCP4	chr15	43672473	+
In-frame	ENST00000325954	ENST00000325954		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
In-frame	ENST00000325954	ENST00000413266		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
5CDS-intron	ENST00000325954	ENST00000542701		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
In-frame	ENST00000413266	ENST00000325954		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
In-frame	ENST00000413266	ENST00000413266		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
5CDS-intron	ENST00000413266	ENST00000542701		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
intron-3CDS	ENST00000542701	ENST00000325954		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
intron-3CDS	ENST00000542701	ENST00000413266		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
intron-intron	ENST00000542701	ENST00000542701		ChiTaRS3.1			AA128506	RNF10	chr12	120995124	-	RNF10	chr12	120995361	+
intron-intron	ENST00000348943	ENST00000348943		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000348943	ENST00000325495		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000348943	ENST00000602219		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000325495	ENST00000348943		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000325495	ENST00000325495		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000325495	ENST00000602219		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000602219	ENST00000348943		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000602219	ENST00000325495		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000602219	ENST00000602219		ChiTaRS3.1			AA993176	HNRNPM	chr19	8545336	+	HNRNPM	chr19	8544173	+
intron-intron	ENST00000435505	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000435505	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000417641	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000478687	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000412104	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000340157	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000474362		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000374721		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000489388		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000374726		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000429130		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000469949		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000460270		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000354759		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000489321		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000395895		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000374728		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000345491		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000333809		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000439705		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000337656		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000374734		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000479070		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000348787		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000361599		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000484283		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000395887		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000463314		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000342105		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000463960		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000487763		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000473940		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000488328		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000356917		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000488741		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000474931		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000468236		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000344351		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000440705	ENST00000490511		ChiTaRS3.1			AW853696	VRK2	chr2	58283268	-	CREM	chr10	35471143	-
intron-intron	ENST00000265192	ENST00000400926		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000265192	ENST00000341935		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000265192	ENST00000349984		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511381	ENST00000400926		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511381	ENST00000341935		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511381	ENST00000349984		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511706	ENST00000400926		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511706	ENST00000341935		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000511706	ENST00000349984		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000394795	ENST00000400926		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000394795	ENST00000341935		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000394795	ENST00000349984		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000510080	ENST00000400926		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000510080	ENST00000341935		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000510080	ENST00000349984		ChiTaRS3.1			W94706	PAIP2	chr5	138700559	+	CCR6	chr6	167455570	+
intron-intron	ENST00000409843	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409843	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409830	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000410051	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000479019	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409805	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000359135	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409580	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409637	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409843		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409830		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000410051		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000479019		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409805		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000359135		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409580		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409637		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-intron	ENST00000409609	ENST00000409609		ChiTaRS3.1			BF988386	GULP1	chr2	189311426	-	GULP1	chr2	189311334	+
intron-3UTR	ENST00000515029	ENST00000539068		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3UTR	ENST00000515029	ENST00000536438		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3UTR	ENST00000515029	ENST00000357266		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-intron	ENST00000515029	ENST00000540787		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-intron	ENST00000515029	ENST00000542713		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3UTR	ENST00000393067	ENST00000539068		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3UTR	ENST00000393067	ENST00000536438		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3UTR	ENST00000393067	ENST00000357266		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-intron	ENST00000393067	ENST00000540787		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-intron	ENST00000393067	ENST00000542713		ChiTaRS3.1			AI761256	POU2AF1	chr11	111223464	+	FKBP5	chr6	35542565	+
intron-3CDS	ENST00000554914	ENST00000311481		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-3CDS	ENST00000554914	ENST00000527397		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-3CDS	ENST00000553390	ENST00000311481		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-3CDS	ENST00000553390	ENST00000527397		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-3CDS	ENST00000304501	ENST00000311481		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-3CDS	ENST00000304501	ENST00000527397		ChiTaRS3.1			BF853306	SOX7	chr8	10583003	+	RAB1B	chr11	66043688	+
intron-intron	ENST00000592782	ENST00000526757		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000534127		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000313726		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000357665		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000530438		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000530991		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000526099		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000534278		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000592782	ENST00000531237		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000526757		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000534127		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000313726		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000357665		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000530438		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000530991		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000526099		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000534278		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000258960	ENST00000531237		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000526757		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000534127		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000313726		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000357665		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000530438		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000530991		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000526099		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000534278		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000590114	ENST00000531237		ChiTaRS3.1			AU140616	NMT1	chr17	43144486	+	ST5	chr11	8751660	-
intron-intron	ENST00000332830	ENST00000332830		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000332830	ENST00000577226		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000332830	ENST00000268756		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000332830	ENST00000582655		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000577226	ENST00000332830		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000577226	ENST00000577226		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000577226	ENST00000268756		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000577226	ENST00000582655		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000268756	ENST00000332830		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000268756	ENST00000577226		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000268756	ENST00000268756		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000268756	ENST00000582655		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000582655	ENST00000332830		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000582655	ENST00000577226		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000582655	ENST00000268756		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000582655	ENST00000582655		ChiTaRS3.1			BU608416	PHF12	chr17	27274595	-	PHF12	chr17	27275280	-
intron-intron	ENST00000337334	ENST00000428849		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000486695		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000417146		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000374523		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000492999		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000448818		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000337334	ENST00000467671		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000428849		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000486695		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000417146		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000374523		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000492999		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000448818		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000353130	ENST00000467671		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000428849		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000486695		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000417146		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000374523		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000492999		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000448818		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000395752	ENST00000467671		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000428849		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000486695		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000417146		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000374523		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000492999		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000448818		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000554241	ENST00000467671		ChiTaRS3.1			BE095196	ABHD12B	chr14	51365296	-	KIFC1	chr6	4852482	+
intron-intron	ENST00000394947	ENST00000485702		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000412216		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000301399		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000420592		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394947	ENST00000451628		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000485702		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000412216		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000301399		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000420592		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000360439	ENST00000451628		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000485702		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000412216		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000301399		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000420592		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000394949	ENST00000451628		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000485702		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000412216		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000301399		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000420592		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
intron-intron	ENST00000567289	ENST00000451628		ChiTaRS3.1			BF366946	SIN3A	chr15	75684925	+	ZNF577	chr19	52376648	+
5CDS-3UTR	ENST00000375999	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000375999	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000375999	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000417793	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000417793	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000417793	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000358897	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000358897	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000358897	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000375998	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000375998	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000375998	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000375995	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000375995	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000375995	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000401090	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-3UTR	ENST00000401090	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
5CDS-intron	ENST00000401090	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
3UTR-3UTR	ENST00000471347	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
3UTR-3UTR	ENST00000471347	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
3UTR-intron	ENST00000471347	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
intron-3UTR	ENST00000314740	ENST00000397799		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
intron-3UTR	ENST00000314740	ENST00000303143		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
intron-intron	ENST00000314740	ENST00000481785		ChiTaRS3.1			BU733266	FHAD1	chr1	15655879	-	COL8A2	chr1	36561313	+
intron-3UTR	ENST00000376753	ENST00000264080		ChiTaRS3.1			BQ181126	FBXO6	chr1	11728478	+	GPR108	chr19	6730066	+
intron-intron	ENST00000376753	ENST00000598626		ChiTaRS3.1			BQ181126	FBXO6	chr1	11728478	+	GPR108	chr19	6730066	+
intron-intron	ENST00000376753	ENST00000430424		ChiTaRS3.1			BQ181126	FBXO6	chr1	11728478	+	GPR108	chr19	6730066	+
intron-3UTR	ENST00000555997	ENST00000332598		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-intron	ENST00000555997	ENST00000507578		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-3UTR	ENST00000439696	ENST00000332598		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-intron	ENST00000439696	ENST00000507578		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-3UTR	ENST00000336440	ENST00000332598		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-intron	ENST00000336440	ENST00000507578		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-3UTR	ENST00000408913	ENST00000332598		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
intron-intron	ENST00000408913	ENST00000507578		ChiTaRS3.1			BF382756	ZFP36L1	chr14	69256090	+	TMED9	chr5	177022906	+
3UTR-intron	ENST00000267101	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
intron-intron	ENST00000450146	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
intron-intron	ENST00000415288	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
intron-intron	ENST00000553131	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
intron-intron	ENST00000411731	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
3UTR-intron	ENST00000549832	ENST00000370489		ChiTaRS3.1			AW994886	ERBB3	chr12	56496798	-	ENTPD7	chr10	101466377	+
intron-intron	ENST00000464873	ENST00000375098		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000464873	ENST00000478530		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000464873	ENST00000342043		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-3UTR	ENST00000464873	ENST00000341469		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000464873	ENST00000538344		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000322623	ENST00000375098		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000322623	ENST00000478530		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000322623	ENST00000342043		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-3UTR	ENST00000322623	ENST00000341469		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000322623	ENST00000538344		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000417360	ENST00000375098		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000417360	ENST00000478530		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000417360	ENST00000342043		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-3UTR	ENST00000417360	ENST00000341469		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000417360	ENST00000538344		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000480616	ENST00000375098		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000480616	ENST00000478530		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000480616	ENST00000342043		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-3UTR	ENST00000480616	ENST00000341469		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-intron	ENST00000480616	ENST00000538344		ChiTaRS3.1			CV343876	RUVBL1	chr3	127806608	-	TRIM14	chr9	100848209	+
intron-3CDS	ENST00000541920	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000541920	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000541920	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000300441	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000300441	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000300441	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000504392	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000504392	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000504392	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000427954	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000427954	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000427954	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000502667	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000502667	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000502667	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000506085	ENST00000313077		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000506085	ENST00000560848		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000506085	ENST00000435939		ChiTaRS3.1			BF091876	ACSF2	chr17	48548730	-	CYFIP1	chr15	22962253	+
intron-3CDS	ENST00000474524	ENST00000373627		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000474524	ENST00000373616		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000474524	ENST00000471737		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000474524	ENST00000538808		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000273432	ENST00000373627		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000273432	ENST00000373616		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000273432	ENST00000471737		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000273432	ENST00000538808		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000491549	ENST00000373627		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000491549	ENST00000373616		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000491549	ENST00000471737		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000491549	ENST00000538808		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000422248	ENST00000373627		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000422248	ENST00000373616		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000422248	ENST00000471737		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000422248	ENST00000538808		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000309237	ENST00000373627		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-3CDS	ENST00000309237	ENST00000373616		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000309237	ENST00000471737		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000309237	ENST00000538808		ChiTaRS3.1			BE930046	MED12L	chr3	150977765	+	MTCH1	chr6	36940509	-
intron-intron	ENST00000391967	ENST00000311129		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000391967	ENST00000426998		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000391967	ENST00000530787		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000391967	ENST00000527614		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000391967	ENST00000427203		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000391967	ENST00000341980		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000391967	ENST00000393055		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000367313	ENST00000311129		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000367313	ENST00000426998		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000367313	ENST00000530787		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000367313	ENST00000527614		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000367313	ENST00000427203		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000367313	ENST00000341980		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000367313	ENST00000393055		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000488842	ENST00000311129		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000488842	ENST00000426998		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000488842	ENST00000530787		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000488842	ENST00000527614		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000488842	ENST00000427203		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000488842	ENST00000341980		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-3UTR	ENST00000488842	ENST00000393055		ChiTaRS3.1			BE564406	LAD1	chr1	201355560	-	PPP2R1B	chr11	111612317	-
intron-intron	ENST00000367545	ENST00000371191		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000407417		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000479364		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000371189		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-3UTR	ENST00000367545	ENST00000403491		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000371187		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000485903		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000371185		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000371184		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367545	ENST00000357977		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000371191		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000407417		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000479364		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000371189		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-3UTR	ENST00000367526	ENST00000403491		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000371187		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000485903		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000371185		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000371184		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000367526	ENST00000357977		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000371191		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000407417		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000479364		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000371189		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-3UTR	ENST00000480333	ENST00000403491		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000371187		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000485903		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000371185		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000371184		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-intron	ENST00000480333	ENST00000357977		ChiTaRS3.1			AU142016	UTRN	chr6	144766736	+	NFIA	chr1	61926695	+
intron-5UTR	ENST00000296440	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000296440	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000296440	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000296440	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000296440	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000296440	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358459	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358459	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358459	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358459	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000358459	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000358459	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358536	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358536	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358536	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000358536	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000358536	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000358536	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000448774	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000448774	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000448774	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000448774	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000448774	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000448774	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000456774	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000456774	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000456774	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000456774	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000456774	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000456774	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000465117	ENST00000296440		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000465117	ENST00000358459		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000465117	ENST00000358536		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-5UTR	ENST00000465117	ENST00000448774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000465117	ENST00000456774		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000465117	ENST00000465117		ChiTaRS3.1			AA348716	PLXNB1	chr3	48452313	-	PLXNB1	chr3	48466714	-
intron-intron	ENST00000361866	ENST00000398665		ChiTaRS3.1			BF847866	COL6A1	chr21	47420141	+	DOT1L	chr19	2219943	+
intron-intron	ENST00000361866	ENST00000608122		ChiTaRS3.1			BF847866	COL6A1	chr21	47420141	+	DOT1L	chr19	2219943	+
intron-intron	ENST00000498614	ENST00000398665		ChiTaRS3.1			BF847866	COL6A1	chr21	47420141	+	DOT1L	chr19	2219943	+
intron-intron	ENST00000498614	ENST00000608122		ChiTaRS3.1			BF847866	COL6A1	chr21	47420141	+	DOT1L	chr19	2219943	+
intron-intron	ENST00000429174	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000429174		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409762		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000413539		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409582		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000258104		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000410020		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409744		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409651		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000410041		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409366		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000394120		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000479049		ChiTaRS3.1			AI033526	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-3UTR	ENST00000452135	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000452135	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000452135	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000393360	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000393360	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000455781	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000455781	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000343111	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000343111	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000347470	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000347470	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000397072	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000397072	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000425491	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000425491	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000539014	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000539014	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000452135		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000393360		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000455781		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000343111		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-3UTR	ENST00000524170	ENST00000347470		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000397072		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000425491		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000539014		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000524170	ENST00000524170		ChiTaRS3.1			CA944466	MAPK9	chr5	179663251	+	MAPK9	chr5	179663201	-
intron-intron	ENST00000557515	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000557515	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000557515	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000557515	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000557515	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000338631	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000338631	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000338631	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000338631	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000338631	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000357481	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000357481	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000357481	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000357481	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000357481	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000605057	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000605057	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000605057	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000605057	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000605057	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000457657	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000457657	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000457657	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000457657	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000457657	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000262710	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000262710	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000262710	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000262710	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000262710	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000397341	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000397341	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000397341	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000397341	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000397341	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555053	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555053	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555053	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555053	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555053	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555352	ENST00000389413		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555352	ENST00000409483		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555352	ENST00000389416		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555352	ENST00000389418		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-intron	ENST00000555352	ENST00000404321		ChiTaRS3.1			BF363006	ACIN1	chr14	23545765	-	PTPRN2	chr7	157625299	-
intron-3UTR	ENST00000396060	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396060	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396060	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396060	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396060	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396060	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396060	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396060	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396060	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000267869	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000267869	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000267869	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000267869	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000267869	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000267869	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000267869	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000267869	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000267869	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396064	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396064	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396064	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396064	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396064	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396064	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396064	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396064	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396064	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396063	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396063	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396063	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396063	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396063	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396063	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396063	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396063	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396063	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396061	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396061	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396061	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396061	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000396061	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396061	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396061	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396061	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000396061	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000484743	ENST00000429277		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000484743	ENST00000352360		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000484743	ENST00000458213		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000484743	ENST00000263066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-3UTR	ENST00000484743	ENST00000361373		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000484743	ENST00000372066		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000484743	ENST00000372056		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000484743	ENST00000310944		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
intron-intron	ENST00000484743	ENST00000542786		ChiTaRS3.1			F37086	GTF2A2	chr15	59944503	+	LDB3	chr10	88494941	+
3UTR-intron	ENST00000249064	ENST00000333119		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
3UTR-intron	ENST00000249064	ENST00000460840		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
3UTR-intron	ENST00000249064	ENST00000335890		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000448492	ENST00000333119		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000448492	ENST00000460840		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000448492	ENST00000335890		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000421503	ENST00000333119		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000421503	ENST00000460840		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000421503	ENST00000335890		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000443309	ENST00000333119		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000443309	ENST00000460840		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000443309	ENST00000335890		ChiTaRS3.1			BF433106	CCDC117	chr22	29185161	+	UXT	chrX	47511195	+
intron-intron	ENST00000407559	ENST00000448150		ChiTaRS3.1			BF767256	WDR60	chr7	158733802	-	RASAL2	chr1	178414501	+
intron-intron	ENST00000407559	ENST00000367649		ChiTaRS3.1			BF767256	WDR60	chr7	158733802	-	RASAL2	chr1	178414501	+
intron-intron	ENST00000407559	ENST00000465723		ChiTaRS3.1			BF767256	WDR60	chr7	158733802	-	RASAL2	chr1	178414501	+
intron-intron	ENST00000407559	ENST00000462775		ChiTaRS3.1			BF767256	WDR60	chr7	158733802	-	RASAL2	chr1	178414501	+
intron-intron	ENST00000300107	ENST00000300107		ChiTaRS3.1			AW847646	CLPX	chr15	65455443	+	CLPX	chr15	65452421	+
intron-intron	ENST00000535206	ENST00000535206		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-3UTR	ENST00000535206	ENST00000379731		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-intron	ENST00000535206	ENST00000541851		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-intron	ENST00000379731	ENST00000535206		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-3UTR	ENST00000379731	ENST00000379731		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-intron	ENST00000379731	ENST00000541851		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-intron	ENST00000541851	ENST00000535206		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-3UTR	ENST00000541851	ENST00000379731		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-intron	ENST00000541851	ENST00000541851		ChiTaRS3.1			BE466056	B4GALT1	chr9	33111195	-	B4GALT1	chr9	33112106	+
intron-3CDS	ENST00000394235	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000394235	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000394235	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000379549	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000379549	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000379549	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000379550	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000379550	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000379550	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000265495	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000265495	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000265495	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000358635	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000358635	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000358635	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000510408	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000510408	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000510408	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000515489	ENST00000215071		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-3CDS	ENST00000515489	ENST00000602911		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
intron-intron	ENST00000515489	ENST00000592035		ChiTaRS3.1			BC071826	ELF2	chr4	140036280	+	PSMD8	chr19	38865435	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AI824606	MALAT1	chr11	65268678	-	MALAT1	chr11	65269320	-
intron-3UTR	ENST00000316084	ENST00000308742		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-intron	ENST00000316084	ENST00000551464		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-3UTR	ENST00000486733	ENST00000308742		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-intron	ENST00000486733	ENST00000551464		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-3UTR	ENST00000373626	ENST00000308742		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-intron	ENST00000373626	ENST00000551464		ChiTaRS3.1			AI382716	RPS4X	chrX	71492507	+	ALG10B	chr12	38716327	-
intron-3CDS	ENST00000263666	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000263666	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000263666	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000263666	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000263666	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000263666	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000263666	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000466780	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000466780	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466780	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466780	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466780	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466780	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000466780	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000308537	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000308537	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000308537	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000308537	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000308537	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000308537	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000308537	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000462146	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000462146	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000462146	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000462146	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000462146	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000462146	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000462146	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000535920	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000535920	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000535920	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000535920	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000535920	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000535920	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000535920	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000479530	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000479530	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000479530	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000479530	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000479530	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000479530	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000479530	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000466348	ENST00000263666		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000466348	ENST00000466780		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466348	ENST00000308537		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466348	ENST00000462146		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466348	ENST00000535920		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-intron	ENST00000466348	ENST00000479530		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-5UTR	ENST00000466348	ENST00000466348		ChiTaRS3.1			W28326	PDZRN3	chr3	73483145	+	PDZRN3	chr3	73439018	-
intron-3CDS	ENST00000370200	ENST00000370200		ChiTaRS3.1			BX098846	KAZALD1	chr10	102827121	+	KAZALD1	chr10	102822528	+
intron-intron	ENST00000370200	ENST00000465807		ChiTaRS3.1			BX098846	KAZALD1	chr10	102827121	+	KAZALD1	chr10	102822528	+
3UTR-3CDS	ENST00000465807	ENST00000370200		ChiTaRS3.1			BX098846	KAZALD1	chr10	102827121	+	KAZALD1	chr10	102822528	+
3UTR-intron	ENST00000465807	ENST00000465807		ChiTaRS3.1			BX098846	KAZALD1	chr10	102827121	+	KAZALD1	chr10	102822528	+
intron-3CDS	ENST00000393043	ENST00000341845		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-3CDS	ENST00000393043	ENST00000430046		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-3CDS	ENST00000393043	ENST00000512348		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-intron	ENST00000393043	ENST00000287761		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000269122	ENST00000341845		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000269122	ENST00000430046		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000269122	ENST00000512348		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-intron	ENST00000269122	ENST00000287761		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000579456	ENST00000341845		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000579456	ENST00000430046		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-3CDS	ENST00000579456	ENST00000512348		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
3UTR-intron	ENST00000579456	ENST00000287761		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-3CDS	ENST00000579815	ENST00000341845		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-3CDS	ENST00000579815	ENST00000430046		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-3CDS	ENST00000579815	ENST00000512348		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-intron	ENST00000579815	ENST00000287761		ChiTaRS3.1			AI989296	CLTC	chr17	57771247	-	FCHO2	chr5	72383502	+
intron-intron	ENST00000438911	ENST00000438911		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000438911	ENST00000530374		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000438911	ENST00000403000		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000438911	ENST00000424149		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000438911	ENST00000306145		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000530374	ENST00000438911		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000530374	ENST00000530374		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000530374	ENST00000403000		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000530374	ENST00000424149		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000530374	ENST00000306145		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000403000	ENST00000438911		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000403000	ENST00000530374		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000403000	ENST00000403000		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000403000	ENST00000424149		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000403000	ENST00000306145		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000424149	ENST00000438911		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000424149	ENST00000530374		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000424149	ENST00000403000		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000424149	ENST00000424149		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000424149	ENST00000306145		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000306145	ENST00000438911		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000306145	ENST00000530374		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000306145	ENST00000403000		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000306145	ENST00000424149		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-intron	ENST00000306145	ENST00000306145		ChiTaRS3.1			BE697386	CYHR1	chr8	145680154	+	CYHR1	chr8	145687220	-
intron-3UTR	ENST00000335272	ENST00000228945		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000335272	ENST00000541644		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-5UTR	ENST00000335272	ENST00000539131		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-intron	ENST00000335272	ENST00000541546		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000320996	ENST00000228945		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000320996	ENST00000541644		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-5UTR	ENST00000320996	ENST00000539131		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-intron	ENST00000320996	ENST00000541546		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000455418	ENST00000228945		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000455418	ENST00000541644		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-5UTR	ENST00000455418	ENST00000539131		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-intron	ENST00000455418	ENST00000541546		ChiTaRS3.1			BF916396	PITPNB	chr22	28248162	+	ARHGDIB	chr12	15095371	+
intron-3UTR	ENST00000522495	ENST00000225388		ChiTaRS3.1			BE172266	IDO1	chr8	39777673	+	NUFIP2	chr17	27582971	+
intron-intron	ENST00000522495	ENST00000579665		ChiTaRS3.1			BE172266	IDO1	chr8	39777673	+	NUFIP2	chr17	27582971	+
intron-3UTR	ENST00000518237	ENST00000225388		ChiTaRS3.1			BE172266	IDO1	chr8	39777673	+	NUFIP2	chr17	27582971	+
intron-intron	ENST00000518237	ENST00000579665		ChiTaRS3.1			BE172266	IDO1	chr8	39777673	+	NUFIP2	chr17	27582971	+
intron-3CDS	ENST00000340790	ENST00000221485		ChiTaRS3.1			BQ345536	PALM3	chr19	14165077	-	SLC17A7	chr19	49933780	-
intron-3CDS	ENST00000340790	ENST00000543531		ChiTaRS3.1			BQ345536	PALM3	chr19	14165077	-	SLC17A7	chr19	49933780	-
intron-3CDS	ENST00000340790	ENST00000600601		ChiTaRS3.1			BQ345536	PALM3	chr19	14165077	-	SLC17A7	chr19	49933780	-
intron-3CDS	ENST00000389039	ENST00000536230		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000389039	ENST00000392282		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000389039	ENST00000538427		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000389039	ENST00000367456		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-intron	ENST00000389039	ENST00000461481		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-intron	ENST00000389039	ENST00000286332		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000603300	ENST00000536230		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000603300	ENST00000392282		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000603300	ENST00000538427		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-3CDS	ENST00000603300	ENST00000367456		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-intron	ENST00000603300	ENST00000461481		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
intron-intron	ENST00000603300	ENST00000286332		ChiTaRS3.1			BG993206	DUOX2	chr15	45386376	+	TAB2	chr6	149699930	-
3UTR-intron	ENST00000372236	ENST00000372236		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
3UTR-intron	ENST00000372236	ENST00000535400		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
3UTR-intron	ENST00000372236	ENST00000372226		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
intron-intron	ENST00000535400	ENST00000372236		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
intron-intron	ENST00000535400	ENST00000535400		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
intron-intron	ENST00000535400	ENST00000372226		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
3UTR-intron	ENST00000372226	ENST00000372236		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
3UTR-intron	ENST00000372226	ENST00000535400		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
3UTR-intron	ENST00000372226	ENST00000372226		ChiTaRS3.1			AA809386	POLH	chr6	43583238	-	POLH	chr6	43586416	-
intron-3UTR	ENST00000452853	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000452853	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000452853	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000452853	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000452853	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000239940	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000239940	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000239940	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000239940	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000239940	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000423691	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000423691	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000423691	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000423691	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000423691	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481767	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481767	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481767	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481767	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481767	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000494827	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000494827	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000494827	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000494827	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000494827	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000490975	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000490975	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000490975	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000490975	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000490975	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000497148	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000497148	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000497148	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000497148	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000497148	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000475518	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000475518	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000475518	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000475518	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000475518	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481275	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481275	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481275	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000481275	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000481275	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000498307	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000498307	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000498307	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000498307	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000498307	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000489155	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000489155	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000489155	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000489155	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000489155	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461930	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461930	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461930	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461930	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461930	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461868	ENST00000452853		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461868	ENST00000239940		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000423691		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461868	ENST00000481767		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-3UTR	ENST00000461868	ENST00000494827		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000490975		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000497148		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000475518		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000481275		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000498307		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000489155		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000461930		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000461868	ENST00000461868		ChiTaRS3.1			D44926	PFN2	chr3	149683768	-	PFN2	chr3	149683805	+
intron-intron	ENST00000261497	ENST00000371269		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000261497	ENST00000537443		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000261497	ENST00000535035		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000537526	ENST00000371269		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000537526	ENST00000537443		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000537526	ENST00000535035		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000455117	ENST00000371269		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000455117	ENST00000537443		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000455117	ENST00000535035		ChiTaRS3.1			AI369276	USP22	chr17	20903330	+	DHCR24	chr1	55352289	+
intron-intron	ENST00000573951	ENST00000573951		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573951	ENST00000538765		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-3UTR	ENST00000573951	ENST00000219069		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573951	ENST00000573578		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573951	ENST00000574253		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000538765	ENST00000573951		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000538765	ENST00000538765		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-3UTR	ENST00000538765	ENST00000219069		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000538765	ENST00000573578		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000538765	ENST00000574253		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000219069	ENST00000573951		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000219069	ENST00000538765		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-3UTR	ENST00000219069	ENST00000219069		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000219069	ENST00000573578		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
5CDS-intron	ENST00000219069	ENST00000574253		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573578	ENST00000573951		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573578	ENST00000538765		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-3UTR	ENST00000573578	ENST00000219069		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573578	ENST00000573578		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000573578	ENST00000574253		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000574253	ENST00000573951		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000574253	ENST00000538765		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-3UTR	ENST00000574253	ENST00000219069		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000574253	ENST00000573578		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-intron	ENST00000574253	ENST00000574253		ChiTaRS3.1			BF588566	ZNF263	chr16	3340370	-	ZNF263	chr16	3341233	-
intron-3CDS	ENST00000438911	ENST00000193403		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000438911	ENST00000394419		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000438911	ENST00000438964		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000438911	ENST00000376839		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000438911	ENST00000538545		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-intron	ENST00000438911	ENST00000554508		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000530374	ENST00000193403		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000530374	ENST00000394419		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000530374	ENST00000438964		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000530374	ENST00000376839		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000530374	ENST00000538545		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-intron	ENST00000530374	ENST00000554508		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000403000	ENST00000193403		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000403000	ENST00000394419		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000403000	ENST00000438964		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000403000	ENST00000376839		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000403000	ENST00000538545		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-intron	ENST00000403000	ENST00000554508		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000424149	ENST00000193403		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000424149	ENST00000394419		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000424149	ENST00000438964		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000424149	ENST00000376839		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000424149	ENST00000538545		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-intron	ENST00000424149	ENST00000554508		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000306145	ENST00000193403		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000306145	ENST00000394419		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000306145	ENST00000438964		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000306145	ENST00000376839		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3CDS	ENST00000306145	ENST00000538545		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-intron	ENST00000306145	ENST00000554508		ChiTaRS3.1			BE838956	CYHR1	chr8	145737426	+	ACTN1	chr14	69356971	+
intron-3UTR	ENST00000360187	ENST00000252575		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3UTR	ENST00000360187	ENST00000538881		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3UTR	ENST00000392321	ENST00000252575		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3UTR	ENST00000392321	ENST00000538881		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3UTR	ENST00000331711	ENST00000252575		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3UTR	ENST00000331711	ENST00000538881		ChiTaRS3.1			T05316	ZNF605	chr12	133504765	-	NCAN	chr19	19360841	+
intron-3CDS	ENST00000360265	ENST00000394947		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000360265	ENST00000360439		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000360265	ENST00000394949		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000360265	ENST00000567289		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000358461	ENST00000394947		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000358461	ENST00000360439		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000358461	ENST00000394949		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000358461	ENST00000567289		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000420658	ENST00000394947		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000420658	ENST00000360439		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000420658	ENST00000394949		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000420658	ENST00000567289		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000382543	ENST00000394947		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000382543	ENST00000360439		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000382543	ENST00000394949		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000382543	ENST00000567289		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000513842	ENST00000394947		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000513842	ENST00000360439		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-3CDS	ENST00000513842	ENST00000394949		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000513842	ENST00000567289		ChiTaRS3.1			BF764786	AFAP1	chr4	7791526	-	SIN3A	chr15	75668146	-
intron-intron	ENST00000327381	ENST00000303113		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000327381	ENST00000453626		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000327381	ENST00000303071		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000327381	ENST00000432378		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000518261	ENST00000303113		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000518261	ENST00000453626		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000518261	ENST00000303071		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000518261	ENST00000432378		ChiTaRS3.1			DA104986	XKR4	chr8	56062021	+	DONSON	chr21	35284625	-
intron-intron	ENST00000340296	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000340296	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000340296	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000534253	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000534253	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000534253	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000263811	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000263811	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000263811	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000397119	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000397119	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000397119	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000410079	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000410079	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000410079	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000508530	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000508530	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-intron	ENST00000508530	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409197	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409197	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409197	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409317	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409317	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409317	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409773	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409773	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409773	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409453	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409453	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000409453	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000358002	ENST00000476233		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000358002	ENST00000354667		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
5UTR-intron	ENST00000358002	ENST00000356674		ChiTaRS3.1			BE841726	DYNC1I2	chr2	172544311	-	HNRNPA2B1	chr7	26233215	+
intron-3UTR	ENST00000309311	ENST00000309311		ChiTaRS3.1			BE763496	EEF2	chr19	3980915	+	EEF2	chr19	3976336	+
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BE763496	EEF2	chr19	3980915	+	EEF2	chr19	3976336	+
intron-3UTR	ENST00000600720	ENST00000309311		ChiTaRS3.1			BE763496	EEF2	chr19	3980915	+	EEF2	chr19	3976336	+
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BE763496	EEF2	chr19	3980915	+	EEF2	chr19	3976336	+
intron-5UTR	ENST00000307275	ENST00000511725		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000307275	ENST00000253815		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000307275	ENST00000398733		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000307275	ENST00000505548		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000591576	ENST00000511725		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000591576	ENST00000253815		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000591576	ENST00000398733		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000591576	ENST00000505548		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000592695	ENST00000511725		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000592695	ENST00000253815		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000592695	ENST00000398733		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-5UTR	ENST00000592695	ENST00000505548		ChiTaRS3.1			BE787286	HEXIM2	chr17	43248939	+	UBE2D2	chr5	138979955	+
intron-intron	ENST00000545260	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545260	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000545693	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000350537	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000346874	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374789	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374790	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374794	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374788	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000466092	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374776	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000340077	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000544292	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374773	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000545260		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000545693		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000350537		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000346874		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374789		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374790		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374794		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374788		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000466092		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374776		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000340077		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000544292		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374773		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000374768	ENST00000374768		ChiTaRS3.1			AW936456	PARD3	chr10	34449253	+	PARD3	chr10	34444624	-
intron-intron	ENST00000367321	ENST00000367321		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000367307		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367321	ENST00000478643		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367321		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000367307		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000367307	ENST00000478643		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367321		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000367307		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-intron	ENST00000478643	ENST00000478643		ChiTaRS3.1			AA815116	MTHFD1L	chr6	151300887	-	MTHFD1L	chr6	151311164	-
intron-3CDS	ENST00000356082	ENST00000356082		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000356082	ENST00000391911		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000356082	ENST00000367030		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000391911	ENST00000356082		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000391911	ENST00000391911		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000391911	ENST00000367030		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000367030	ENST00000356082		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000367030	ENST00000391911		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000367030	ENST00000367030		ChiTaRS3.1			BI017906	LAMB3	chr1	209788474	-	LAMB3	chr1	209796480	-
intron-3CDS	ENST00000545170	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000545170	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000429774	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000429774	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000393287	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000393287	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000502250	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000502250	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000503767	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000503767	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000340660	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000340660	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000532032	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000532032	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-3CDS	ENST00000554491	ENST00000423059		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000554491	ENST00000480061		ChiTaRS3.1			AI357266	ATXN3	chr14	92537366	+	THSD7A	chr7	11676452	+
intron-5UTR	ENST00000261406	ENST00000559237		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-5UTR	ENST00000261406	ENST00000267807		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000261406	ENST00000559000		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-5UTR	ENST00000261406	ENST00000396245		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000261406	ENST00000558320		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000261406	ENST00000561122		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-5UTR	ENST00000546220	ENST00000559237		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-5UTR	ENST00000546220	ENST00000267807		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000546220	ENST00000559000		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-5UTR	ENST00000546220	ENST00000396245		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000546220	ENST00000558320		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000546220	ENST00000561122		ChiTaRS3.1			BU622286	EMG1	chr12	7088864	-	ZNF280D	chr15	57025707	-
intron-intron	ENST00000375400	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375400	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000375398	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000355867	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000535393	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000460007	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000413405		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000414457		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000446807		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000423223		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000445521		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000455774		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000430295		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000608994		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000609413		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000537908		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000427063		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-intron	ENST00000538146	ENST00000438202		ChiTaRS3.1			BI038426	SVIL	chr10	29801686	+	PTCHD3P1	chr10	29760156	+
intron-3UTR	ENST00000309859	ENST00000367142		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-intron	ENST00000309859	ENST00000464938		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-3UTR	ENST00000567468	ENST00000367142		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-intron	ENST00000567468	ENST00000464938		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-3UTR	ENST00000569182	ENST00000367142		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-intron	ENST00000569182	ENST00000464938		ChiTaRS3.1			BQ338666	GGA2	chr16	23477493	-	NUCKS1	chr1	205683186	+
intron-3UTR	ENST00000326756	ENST00000326756		ChiTaRS3.1			AA211236	ZNF518B	chr4	10442678	+	ZNF518B	chr4	10442541	-
intron-intron	ENST00000326756	ENST00000515072		ChiTaRS3.1			AA211236	ZNF518B	chr4	10442678	+	ZNF518B	chr4	10442541	-
intron-3UTR	ENST00000515072	ENST00000326756		ChiTaRS3.1			AA211236	ZNF518B	chr4	10442678	+	ZNF518B	chr4	10442541	-
intron-intron	ENST00000515072	ENST00000515072		ChiTaRS3.1			AA211236	ZNF518B	chr4	10442678	+	ZNF518B	chr4	10442541	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			AW881446	INS-IGF2	chr11	2150920	+	INS-IGF2	chr11	2150682	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			AW881446	INS-IGF2	chr11	2150920	+	INS-IGF2	chr11	2150682	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			AW881446	INS-IGF2	chr11	2150920	+	INS-IGF2	chr11	2150682	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			AW881446	INS-IGF2	chr11	2150920	+	INS-IGF2	chr11	2150682	-
3UTR-intron	ENST00000534336	ENST00000524717		ChiTaRS3.1			BF771336	MALAT1	chr11	65266750	-	MAML2	chr11	95984749	+
intron-3CDS	ENST00000360319	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000360319	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-3CDS	ENST00000422373	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000422373	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-3CDS	ENST00000369850	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000369850	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-3CDS	ENST00000369856	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000369856	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-3CDS	ENST00000344736	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000344736	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-3CDS	ENST00000498491	ENST00000377833		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
intron-intron	ENST00000498491	ENST00000377823		ChiTaRS3.1			BI039276	FLNA	chrX	153585863	+	CUBN	chr10	16955945	+
3UTR-3CDS	ENST00000534336	ENST00000453386		ChiTaRS3.1			AV755596	MALAT1	chr11	65266730	+	TRA2B	chr3	185655633	-
3UTR-5UTR	ENST00000534336	ENST00000382191		ChiTaRS3.1			AV755596	MALAT1	chr11	65266730	+	TRA2B	chr3	185655633	-
3UTR-intron	ENST00000534336	ENST00000471134		ChiTaRS3.1			AV755596	MALAT1	chr11	65266730	+	TRA2B	chr3	185655633	-
3UTR-intron	ENST00000534336	ENST00000342294		ChiTaRS3.1			AV755596	MALAT1	chr11	65266730	+	TRA2B	chr3	185655633	-
Frame-shit	ENST00000366671	ENST00000366671		ChiTaRS3.1			BQ304356	OTX1	chr2	63283373	-	OTX1	chr2	63283230	+
Frame-shit	ENST00000366671	ENST00000282549		ChiTaRS3.1			BQ304356	OTX1	chr2	63283373	-	OTX1	chr2	63283230	+
Frame-shit	ENST00000282549	ENST00000366671		ChiTaRS3.1			BQ304356	OTX1	chr2	63283373	-	OTX1	chr2	63283230	+
Frame-shit	ENST00000282549	ENST00000282549		ChiTaRS3.1			BQ304356	OTX1	chr2	63283373	-	OTX1	chr2	63283230	+
intron-intron	ENST00000371244	ENST00000371244		ChiTaRS3.1			AI732856	PRKAA2	chr1	57171911	+	PRKAA2	chr1	57171993	-
3UTR-intron	ENST00000497986	ENST00000337817		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000497986	ENST00000360380		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000497986	ENST00000371877		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000497986	ENST00000243182		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000497986	ENST00000396221		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
5CDS-intron	ENST00000335514	ENST00000337817		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
5CDS-intron	ENST00000335514	ENST00000360380		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
5CDS-intron	ENST00000335514	ENST00000371877		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
5CDS-intron	ENST00000335514	ENST00000243182		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
5CDS-intron	ENST00000335514	ENST00000396221		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000468425	ENST00000337817		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000468425	ENST00000360380		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000468425	ENST00000371877		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000468425	ENST00000243182		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000468425	ENST00000396221		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000465645	ENST00000337817		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000465645	ENST00000360380		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000465645	ENST00000371877		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000465645	ENST00000243182		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
3UTR-intron	ENST00000465645	ENST00000396221		ChiTaRS3.1			AW582126	ATPIF1	chr1	28564365	-	STIL	chr1	47770545	-
intron-intron	ENST00000456860	ENST00000456860		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000456860	ENST00000322282		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000456860	ENST00000529750		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000456860	ENST00000450171		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000322282	ENST00000456860		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000322282	ENST00000322282		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000322282	ENST00000529750		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000322282	ENST00000450171		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000529750	ENST00000456860		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000529750	ENST00000322282		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000529750	ENST00000529750		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000529750	ENST00000450171		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000450171	ENST00000456860		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000450171	ENST00000322282		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000450171	ENST00000529750		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-intron	ENST00000450171	ENST00000450171		ChiTaRS3.1			DW424986	GRAMD1B	chr11	123427521	+	GRAMD1B	chr11	123424926	+
intron-3CDS	ENST00000381140	ENST00000265056		ChiTaRS3.1			BC012756	GTF3A	chr13	28014244	+	MCM2	chr3	127318322	+
intron-intron	ENST00000381140	ENST00000468414		ChiTaRS3.1			BC012756	GTF3A	chr13	28014244	+	MCM2	chr3	127318322	+
intron-3CDS	ENST00000470606	ENST00000265056		ChiTaRS3.1			BC012756	GTF3A	chr13	28014244	+	MCM2	chr3	127318322	+
intron-intron	ENST00000470606	ENST00000468414		ChiTaRS3.1			BC012756	GTF3A	chr13	28014244	+	MCM2	chr3	127318322	+
intron-intron	ENST00000356151	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000356151	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000302779	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383716	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000463280	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000383715	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
3UTR-intron	ENST00000484288	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000479241	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000356151		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000302779		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000383716		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000463280		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000383715		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000484288		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000479241		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000536660	ENST00000536660		ChiTaRS3.1			BG741316	PXK	chr3	58406620	+	PXK	chr3	58402609	+
intron-intron	ENST00000510767	ENST00000510767		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000512786		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000510066		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510767	ENST00000512538		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000510767		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000512786		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000510066		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512786	ENST00000512538		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000510767		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000512786		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000510066		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000510066	ENST00000512538		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000510767		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000512786		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000510066		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-intron	ENST00000512538	ENST00000512538		ChiTaRS3.1			AW996896	SLC7A11-AS1	chr4	139092323	+	SLC7A11-AS1	chr4	139087421	+
intron-3CDS	ENST00000334956	ENST00000328735		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000334956	ENST00000330333		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000334956	ENST00000347667		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3UTR	ENST00000334956	ENST00000466122		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000539723	ENST00000328735		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000539723	ENST00000330333		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000539723	ENST00000347667		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3UTR	ENST00000539723	ENST00000466122		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000550549	ENST00000328735		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000550549	ENST00000330333		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000550549	ENST00000347667		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3UTR	ENST00000550549	ENST00000466122		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000538608	ENST00000328735		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000538608	ENST00000330333		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000538608	ENST00000347667		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3UTR	ENST00000538608	ENST00000466122		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000526746	ENST00000328735		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000526746	ENST00000330333		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3CDS	ENST00000526746	ENST00000347667		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-3UTR	ENST00000526746	ENST00000466122		ChiTaRS3.1			AK027376	PARVA	chr11	12510710	+	BACE2	chr21	42609559	+
intron-intron	ENST00000398970	ENST00000398970		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000398970	ENST00000300574		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000398970	ENST00000574295		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000398970	ENST00000572145		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000300574	ENST00000398970		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000300574	ENST00000300574		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000300574	ENST00000574295		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000300574	ENST00000572145		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000574295	ENST00000398970		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000574295	ENST00000300574		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000574295	ENST00000574295		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000574295	ENST00000572145		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000572145	ENST00000398970		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000572145	ENST00000300574		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000572145	ENST00000574295		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
intron-intron	ENST00000572145	ENST00000572145		ChiTaRS3.1			AI368616	CRK	chr17	1334758	+	CRK	chr17	1333956	+
3UTR-3UTR	ENST00000535916	ENST00000535916		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000535916	ENST00000286428		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000535916	ENST00000459836		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000286428	ENST00000535916		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000286428	ENST00000286428		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000286428	ENST00000459836		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000459836	ENST00000535916		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000459836	ENST00000286428		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-3UTR	ENST00000459836	ENST00000459836		ChiTaRS3.1			AL079966	VBP1	chrX	154467136	-	VBP1	chrX	154467246	+
3UTR-intron	ENST00000543155	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
intron-intron	ENST00000542150	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
3UTR-intron	ENST00000229251	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
3UTR-intron	ENST00000539735	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
3UTR-intron	ENST00000538410	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
3UTR-intron	ENST00000534947	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
3UTR-intron	ENST00000534877	ENST00000374432		ChiTaRS3.1			AW881926	COPS7A	chr12	6840902	+	LINC00619	chr10	44342687	-
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BI059646	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
In-frame	ENST00000225792	ENST00000321728		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
In-frame	ENST00000225792	ENST00000303531		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000225792	ENST00000482000		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000225792	ENST00000498058		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
In-frame	ENST00000450599	ENST00000321728		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
In-frame	ENST00000450599	ENST00000303531		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000450599	ENST00000482000		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000450599	ENST00000498058		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000578804	ENST00000321728		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000578804	ENST00000303531		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000578804	ENST00000482000		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000578804	ENST00000498058		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000580026	ENST00000321728		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000580026	ENST00000303531		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000580026	ENST00000482000		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000580026	ENST00000498058		ChiTaRS3.1			CD683976	DDX5	chr17	62502192	-	PRKCB	chr16	24166004	+
intron-5UTR	ENST00000407426	ENST00000382582		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000355994		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000397875		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000397866		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000397865		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000527041		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-intron	ENST00000407426	ENST00000359645		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-intron	ENST00000407426	ENST00000528160		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-intron	ENST00000407426	ENST00000397869		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000354542		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000526111		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000580402		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000579129		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000578193		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000397863		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000397860		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-5UTR	ENST00000407426	ENST00000487778		ChiTaRS3.1			DA181566	WDR43	chr2	29150925	+	MBP	chr18	74729012	-
intron-intron	ENST00000302517	ENST00000541742		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000302517	ENST00000490107		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000302517	ENST00000388985		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000302517	ENST00000366517		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000302517	ENST00000403792		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000511048	ENST00000541742		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000511048	ENST00000490107		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000511048	ENST00000388985		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000511048	ENST00000366517		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000511048	ENST00000403792		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000515038	ENST00000541742		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000515038	ENST00000490107		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000515038	ENST00000388985		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000515038	ENST00000366517		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000515038	ENST00000403792		ChiTaRS3.1			AI351776	CXXC5	chr5	139062327	-	SMYD3	chr1	246657067	+
intron-intron	ENST00000524892	ENST00000524892		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000524892	ENST00000298815		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000524892	ENST00000534060		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000298815	ENST00000524892		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000298815	ENST00000298815		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000298815	ENST00000534060		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000534060	ENST00000524892		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000534060	ENST00000298815		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000534060	ENST00000534060		ChiTaRS3.1			AW015536	ARHGAP42	chr11	100582829	-	ARHGAP42	chr11	100598045	-
intron-intron	ENST00000225402	ENST00000602399		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-intron	ENST00000225402	ENST00000402938		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-intron	ENST00000225402	ENST00000602808		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-intron	ENST00000590321	ENST00000602399		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-intron	ENST00000590321	ENST00000402938		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-intron	ENST00000590321	ENST00000602808		ChiTaRS3.1			BF334226	AATF	chr17	35377795	-	GABRR2	chr6	90008037	-
intron-3CDS	ENST00000296503	ENST00000267812		ChiTaRS3.1			BF095536	HMGB2	chr4	174253383	+	MFAP1	chr15	44105288	+
intron-3CDS	ENST00000438704	ENST00000267812		ChiTaRS3.1			BF095536	HMGB2	chr4	174253383	+	MFAP1	chr15	44105288	+
intron-3CDS	ENST00000446922	ENST00000267812		ChiTaRS3.1			BF095536	HMGB2	chr4	174253383	+	MFAP1	chr15	44105288	+
intron-3UTR	ENST00000257290	ENST00000226091		ChiTaRS3.1			BE834326	PDGFRA	chr4	55102615	+	EFNB3	chr17	7613927	+
intron-3UTR	ENST00000508170	ENST00000226091		ChiTaRS3.1			BE834326	PDGFRA	chr4	55102615	+	EFNB3	chr17	7613927	+
intron-intron	ENST00000519595	ENST00000248211		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000519595	ENST00000540927		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000519595	ENST00000426665		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000519595	ENST00000402932		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000518642	ENST00000248211		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000518642	ENST00000540927		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000518642	ENST00000426665		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000518642	ENST00000402932		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000250173	ENST00000248211		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000250173	ENST00000540927		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000250173	ENST00000426665		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000250173	ENST00000402932		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000520446	ENST00000248211		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000520446	ENST00000540927		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000520446	ENST00000426665		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
intron-intron	ENST00000520446	ENST00000402932		ChiTaRS3.1			CA503006	LRRC6	chr8	133623610	+	ZNF10	chr12	133707603	-
3UTR-3UTR	ENST00000356592	ENST00000356592		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000356592	ENST00000414552		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-intron	ENST00000356592	ENST00000361925		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000356592	ENST00000393933		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000414552	ENST00000356592		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000414552	ENST00000414552		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-intron	ENST00000414552	ENST00000361925		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000414552	ENST00000393933		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
intron-3UTR	ENST00000361925	ENST00000356592		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
intron-3UTR	ENST00000361925	ENST00000414552		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
intron-intron	ENST00000361925	ENST00000361925		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
intron-3UTR	ENST00000361925	ENST00000393933		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000393933	ENST00000356592		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000393933	ENST00000414552		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-intron	ENST00000393933	ENST00000361925		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000393933	ENST00000393933		ChiTaRS3.1			BQ716996	GABRG2	chr5	161580507	-	GABRG2	chr5	161580602	+
3UTR-3UTR	ENST00000371666	ENST00000367142		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
3UTR-intron	ENST00000371666	ENST00000464938		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-3UTR	ENST00000371642	ENST00000367142		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-intron	ENST00000371642	ENST00000464938		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-3UTR	ENST00000481868	ENST00000367142		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-intron	ENST00000481868	ENST00000464938		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-3UTR	ENST00000371637	ENST00000367142		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
intron-intron	ENST00000371637	ENST00000464938		ChiTaRS3.1			AW578886	IL13RA1	chrX	117926988	+	NUCKS1	chr1	205687372	+
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893496	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000517997	ENST00000374012		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000517997	ENST00000439301		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000517997	ENST00000481202		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000457458	ENST00000374012		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000457458	ENST00000439301		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000457458	ENST00000481202		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000357227	ENST00000374012		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000357227	ENST00000439301		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000357227	ENST00000481202		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000518022	ENST00000374012		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000518022	ENST00000439301		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000518022	ENST00000481202		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000276052	ENST00000374012		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000276052	ENST00000439301		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-intron	ENST00000276052	ENST00000481202		ChiTaRS3.1			BI050456	CDK16	chrX	47083234	+	PHF20	chr20	34380461	+
intron-3UTR	ENST00000230381	ENST00000230381		ChiTaRS3.1			W28996	PRPH2	chr6	42665298	+	PRPH2	chr6	42665133	-
In-frame	ENST00000291547	ENST00000291547		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
In-frame	ENST00000291547	ENST00000432907		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
5CDS-intron	ENST00000291547	ENST00000607150		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
In-frame	ENST00000432907	ENST00000291547		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
In-frame	ENST00000432907	ENST00000432907		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
5CDS-intron	ENST00000432907	ENST00000607150		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
intron-3CDS	ENST00000607150	ENST00000291547		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
intron-3CDS	ENST00000607150	ENST00000432907		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
intron-intron	ENST00000607150	ENST00000607150		ChiTaRS3.1			BE720096	PKNOX1	chr21	44433286	-	PKNOX1	chr21	44441462	+
intron-intron	ENST00000272203	ENST00000523698		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000517876		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000521450		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000403027		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000524105		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000285896		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000520671		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000521583		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000519404		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000272203	ENST00000521402		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000523698		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000517876		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000521450		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000403027		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000524105		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000285896		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000520671		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000521583		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000519404		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000414478	ENST00000521402		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000523698		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000517876		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000521450		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000403027		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000524105		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000285896		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000520671		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000521583		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000519404		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
intron-intron	ENST00000485632	ENST00000521402		ChiTaRS3.1			BG979616	PLEKHA6	chr1	204210536	-	CNOT8	chr5	154240259	-
3UTR-intron	ENST00000300150	ENST00000414441		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000300150	ENST00000310512		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000337979	ENST00000414441		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000337979	ENST00000310512		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000535361	ENST00000414441		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000535361	ENST00000310512		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
intron-intron	ENST00000437946	ENST00000414441		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
intron-intron	ENST00000437946	ENST00000310512		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000529177	ENST00000414441		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
3UTR-intron	ENST00000529177	ENST00000310512		ChiTaRS3.1			BE933166	STX3	chr11	59568849	-	MEPCE	chr7	100026880	+
intron-intron	ENST00000429174	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000429174	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409762	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000413539	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409582	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000258104	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410020	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409744	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409651	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000410041	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000409366	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000394120	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000429174		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409762		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000413539		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409582		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000258104		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000410020		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409744		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409651		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000410041		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000409366		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000394120		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-intron	ENST00000479049	ENST00000479049		ChiTaRS3.1			AA700756	DYSF	chr2	71712586	-	DYSF	chr2	71717495	-
intron-3UTR	ENST00000355653	ENST00000355653		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000355653	ENST00000587173		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000355653	ENST00000420567		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-3UTR	ENST00000587173	ENST00000355653		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000587173	ENST00000587173		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000587173	ENST00000420567		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-3UTR	ENST00000420567	ENST00000355653		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000420567	ENST00000587173		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000420567	ENST00000420567		ChiTaRS3.1			BF881836	VAT1	chr17	41166779	-	VAT1	chr17	41167766	-
intron-intron	ENST00000328090	ENST00000328090		ChiTaRS3.1			AK026036	FAM208B	chr10	5751733	+	FAM208B	chr10	5747839	+
intron-intron	ENST00000328090	ENST00000463468		ChiTaRS3.1			AK026036	FAM208B	chr10	5751733	+	FAM208B	chr10	5747839	+
intron-intron	ENST00000463468	ENST00000328090		ChiTaRS3.1			AK026036	FAM208B	chr10	5751733	+	FAM208B	chr10	5747839	+
intron-intron	ENST00000463468	ENST00000463468		ChiTaRS3.1			AK026036	FAM208B	chr10	5751733	+	FAM208B	chr10	5747839	+
3UTR-intron	ENST00000513238	ENST00000261023		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000513238	ENST00000374907		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000513238	ENST00000433736		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000513238	ENST00000474571		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000307428	ENST00000261023		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000307428	ENST00000374907		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000307428	ENST00000433736		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-intron	ENST00000307428	ENST00000474571		ChiTaRS3.1			BF063946	PARM1	chr4	75972355	-	ITGAV	chr2	187503046	-
3UTR-3UTR	ENST00000368061	ENST00000368061		ChiTaRS3.1			BE177496	VANGL2	chr1	160396286	-	VANGL2	chr1	160396864	-
3UTR-intron	ENST00000368061	ENST00000483408		ChiTaRS3.1			BE177496	VANGL2	chr1	160396286	-	VANGL2	chr1	160396864	-
intron-3UTR	ENST00000483408	ENST00000368061		ChiTaRS3.1			BE177496	VANGL2	chr1	160396286	-	VANGL2	chr1	160396864	-
intron-intron	ENST00000483408	ENST00000483408		ChiTaRS3.1			BE177496	VANGL2	chr1	160396286	-	VANGL2	chr1	160396864	-
intron-3CDS	ENST00000372852	ENST00000355610		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-3CDS	ENST00000372852	ENST00000535534		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-3CDS	ENST00000372852	ENST00000255495		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-3CDS	ENST00000535435	ENST00000355610		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-3CDS	ENST00000535435	ENST00000535534		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-3CDS	ENST00000535435	ENST00000255495		ChiTaRS3.1			BI058396	HEYL	chr1	40095907	-	MORC4	chrX	106185927	+
intron-intron	ENST00000205061	ENST00000231061		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-intron	ENST00000205061	ENST00000537849		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-intron	ENST00000422840	ENST00000231061		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-intron	ENST00000422840	ENST00000537849		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-intron	ENST00000447066	ENST00000231061		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-intron	ENST00000447066	ENST00000537849		ChiTaRS3.1			AI360976	GLG1	chr16	74497364	+	SPARC	chr5	151043648	+
intron-3UTR	ENST00000302538	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000302538	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000302538	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000544583	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000544583	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000544583	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000572441	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000572441	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000572441	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000574437	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000574437	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000574437	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000291107	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000291107	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000291107	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000543210	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000543210	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000543210	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000536794	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000536794	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000536794	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000573895	ENST00000302538		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-3UTR	ENST00000573895	ENST00000544583		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000572441		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000574437		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000291107		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000543210		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000536794		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000573895	ENST00000573895		ChiTaRS3.1			CN348646	ABR	chr17	907760	+	ABR	chr17	907924	-
intron-intron	ENST00000534526	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000531134	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000427716	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000266482	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000546442	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000525053	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000381025	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000472289	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
intron-intron	ENST00000473513	ENST00000305135		ChiTaRS3.1			BF359356	FGD4	chr12	32748464	+	YEATS2	chr3	183483026	-
In-frame	ENST00000392069	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392069	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000344493	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000344493	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000350526	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000350526	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000336840	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000336840	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000392070	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000392070	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
In-frame	ENST00000409551	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000409551	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-3CDS	ENST00000464706	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
5UTR-5UTR	ENST00000464706	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000409828	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000409828	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-3CDS	ENST00000258387	ENST00000379561		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
intron-5UTR	ENST00000258387	ENST00000473775		ChiTaRS3.1			BC008826	PAX3	chr2	223084859	-	FOXO1	chr13	41135000	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			AW889746	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			AW889746	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			AW889746	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			AW889746	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-3CDS	ENST00000476258	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000476258	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000476258	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000476258	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000405458	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000405458	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000405458	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000405458	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000409753	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000409753	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000409753	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000409753	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000482348	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000482348	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000482348	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000482348	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000356033	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000356033	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000356033	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000356033	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000470924	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000470924	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000470924	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000470924	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000481647	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000481647	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000481647	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000481647	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000392566	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000392566	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000392566	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000392566	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000581874	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000581874	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000581874	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000581874	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000465454	ENST00000266269		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000465454	ENST00000405309		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000465454	ENST00000351933		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
intron-3CDS	ENST00000465454	ENST00000215919		ChiTaRS3.1			AI936646	HN1	chr17	73132283	+	PATZ1	chr22	31741373	+
5CDS-intron	ENST00000273258	ENST00000368648		ChiTaRS3.1			BF827316	ARL6IP5	chr3	69151062	+	EBF3	chr10	131714546	-
5CDS-intron	ENST00000273258	ENST00000355311		ChiTaRS3.1			BF827316	ARL6IP5	chr3	69151062	+	EBF3	chr10	131714546	-
intron-intron	ENST00000478935	ENST00000368648		ChiTaRS3.1			BF827316	ARL6IP5	chr3	69151062	+	EBF3	chr10	131714546	-
intron-intron	ENST00000478935	ENST00000355311		ChiTaRS3.1			BF827316	ARL6IP5	chr3	69151062	+	EBF3	chr10	131714546	-
intron-3CDS	ENST00000215793	ENST00000215793		ChiTaRS3.1			BF893736	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-intron	ENST00000215793	ENST00000439242		ChiTaRS3.1			BF893736	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-3CDS	ENST00000439242	ENST00000215793		ChiTaRS3.1			BF893736	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
intron-intron	ENST00000439242	ENST00000439242		ChiTaRS3.1			BF893736	SF3A1	chr22	30741135	-	SF3A1	chr22	30742375	+
5CDS-intron	ENST00000309042	ENST00000263202		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
5CDS-intron	ENST00000309042	ENST00000360834		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
5CDS-intron	ENST00000309042	ENST00000399523		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
5CDS-intron	ENST00000309042	ENST00000484101		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
intron-intron	ENST00000514063	ENST00000263202		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
intron-intron	ENST00000514063	ENST00000360834		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
intron-intron	ENST00000514063	ENST00000399523		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
intron-intron	ENST00000514063	ENST00000484101		ChiTaRS3.1			BE813696	REST	chr4	57796393	+	UFD1L	chr22	19450787	-
intron-3CDS	ENST00000400546	ENST00000361891		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000400546	ENST00000480213		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000400546	ENST00000368681		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000284894	ENST00000361891		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000284894	ENST00000480213		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000284894	ENST00000368681		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000535285	ENST00000361891		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000535285	ENST00000480213		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000535285	ENST00000368681		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3CDS	ENST00000486367	ENST00000361891		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000486367	ENST00000480213		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-intron	ENST00000486367	ENST00000368681		ChiTaRS3.1			AI207686	NCAM2	chr21	22826999	-	ILF2	chr1	153637814	-
intron-3UTR	ENST00000367996	ENST00000287600		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000367996	ENST00000409772		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000367996	ENST00000477748		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-3UTR	ENST00000478394	ENST00000287600		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000478394	ENST00000409772		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000478394	ENST00000477748		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-3UTR	ENST00000367995	ENST00000287600		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000367995	ENST00000409772		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
intron-intron	ENST00000367995	ENST00000477748		ChiTaRS3.1			AV724446	ADAMTS4	chr1	161168402	-	PDE6D	chr2	232597328	-
5CDS-intron	ENST00000264377	ENST00000264377		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000264377	ENST00000374416		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000264377	ENST00000374415		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374416	ENST00000264377		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374416	ENST00000374416		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374416	ENST00000374415		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374415	ENST00000264377		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374415	ENST00000374416		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
5CDS-intron	ENST00000374415	ENST00000374415		ChiTaRS3.1			AW898896	ADAM23	chr2	207431973	-	ADAM23	chr2	207454234	-
intron-intron	ENST00000559763	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000559763	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000559763	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000559763	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000330964	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000330964	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000330964	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000330964	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000462430	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000462430	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000462430	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000462430	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000455271	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000455271	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000455271	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000455271	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000411926	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000411926	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000411926	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000411926	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000439025	ENST00000372899		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000439025	ENST00000372901		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000439025	ENST00000372883		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
intron-intron	ENST00000439025	ENST00000372903		ChiTaRS3.1			AW474016	RPS27L	chr15	63449683	+	UBR2	chr6	42604150	+
5CDS-intron	ENST00000265113	ENST00000265113		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
5CDS-intron	ENST00000265113	ENST00000506725		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
5CDS-intron	ENST00000265113	ENST00000381918		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
3UTR-intron	ENST00000506725	ENST00000265113		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
3UTR-intron	ENST00000506725	ENST00000506725		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
3UTR-intron	ENST00000506725	ENST00000381918		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
5CDS-intron	ENST00000381918	ENST00000265113		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
5CDS-intron	ENST00000381918	ENST00000506725		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
5CDS-intron	ENST00000381918	ENST00000381918		ChiTaRS3.1			AI638026	SLC1A3	chr5	36608567	-	SLC1A3	chr5	36630452	-
intron-5UTR	ENST00000381844	ENST00000392872		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000381844	ENST00000266775		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000381844	ENST00000544861		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000381844	ENST00000542036		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000381844	ENST00000536395		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000238081	ENST00000392872		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000238081	ENST00000266775		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000238081	ENST00000544861		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000238081	ENST00000542036		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000238081	ENST00000536395		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000474715	ENST00000392872		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000474715	ENST00000266775		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-5UTR	ENST00000474715	ENST00000544861		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000474715	ENST00000542036		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-intron	ENST00000474715	ENST00000536395		ChiTaRS3.1			U51166	YWHAQ	chr2	9738173	-	TDG	chr12	104359664	+
intron-3CDS	ENST00000392038	ENST00000450554		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000392038	ENST00000308924		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-intron	ENST00000392038	ENST00000590551		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000424901	ENST00000450554		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000424901	ENST00000308924		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-intron	ENST00000424901	ENST00000590551		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000311278	ENST00000450554		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000311278	ENST00000308924		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-intron	ENST00000311278	ENST00000590551		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000579047	ENST00000450554		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000579047	ENST00000308924		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-intron	ENST00000579047	ENST00000590551		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000581582	ENST00000450554		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3CDS	ENST00000581582	ENST00000308924		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-intron	ENST00000581582	ENST00000590551		ChiTaRS3.1			BI021056	AKT2	chr19	40739823	-	U2AF2	chr19	56170673	+
intron-3UTR	ENST00000263708	ENST00000250092		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000263708	ENST00000380498		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000544261	ENST00000250092		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000544261	ENST00000380498		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000460162	ENST00000250092		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
intron-3UTR	ENST00000460162	ENST00000380498		ChiTaRS3.1			CA425896	PTPN4	chr2	120675062	+	CD68	chr17	7484960	-
5CDS-intron	ENST00000356805	ENST00000356805		ChiTaRS3.1			BF510936	SPTBN1	chr2	54856178	-	SPTBN1	chr2	54872725	-
5CDS-intron	ENST00000356805	ENST00000333896		ChiTaRS3.1			BF510936	SPTBN1	chr2	54856178	-	SPTBN1	chr2	54872725	-
5CDS-intron	ENST00000333896	ENST00000356805		ChiTaRS3.1			BF510936	SPTBN1	chr2	54856178	-	SPTBN1	chr2	54872725	-
5CDS-intron	ENST00000333896	ENST00000333896		ChiTaRS3.1			BF510936	SPTBN1	chr2	54856178	-	SPTBN1	chr2	54872725	-
intron-intron	ENST00000319592	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000319592	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000319592	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000319592	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000319592	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000319592	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381793	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000381795	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000295971	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000514014	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000319592		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000381793		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000381795		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000295971		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000514014		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000515809	ENST00000515809		ChiTaRS3.1			BF741816	RBM47	chr4	40543305	-	RBM47	chr4	40544649	-
intron-intron	ENST00000474629	ENST00000474629		ChiTaRS3.1			BF907666	PARP14	chr3	122440436	-	PARP14	chr3	122441378	+
intron-intron	ENST00000474629	ENST00000475640		ChiTaRS3.1			BF907666	PARP14	chr3	122440436	-	PARP14	chr3	122441378	+
intron-intron	ENST00000475640	ENST00000474629		ChiTaRS3.1			BF907666	PARP14	chr3	122440436	-	PARP14	chr3	122441378	+
intron-intron	ENST00000475640	ENST00000475640		ChiTaRS3.1			BF907666	PARP14	chr3	122440436	-	PARP14	chr3	122441378	+
intron-intron	ENST00000520468	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000520468	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000520468	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000520468	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000297564	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000297564	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000297564	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000297564	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000520271	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000520271	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000520271	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000520271	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000517682	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000517682	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000517682	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000517682	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000524245	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000524245	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000524245	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000524245	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000522940	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000522940	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000522940	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000522940	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000518171	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000518171	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000518171	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000518171	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000523016	ENST00000419333		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3UTR	ENST00000523016	ENST00000292823		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000523016	ENST00000431016		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-intron	ENST00000523016	ENST00000491544		ChiTaRS3.1			BU674566	COX6C	chr8	100899767	+	PCYT1A	chr3	195961347	-
intron-3CDS	ENST00000357849	ENST00000357849		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-3CDS	ENST00000357849	ENST00000517736		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-intron	ENST00000357849	ENST00000519963		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-3CDS	ENST00000517736	ENST00000357849		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-3CDS	ENST00000517736	ENST00000517736		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-intron	ENST00000517736	ENST00000519963		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-3CDS	ENST00000519963	ENST00000357849		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-3CDS	ENST00000519963	ENST00000517736		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
intron-intron	ENST00000519963	ENST00000519963		ChiTaRS3.1			CA419886	COPS5	chr8	67958068	+	COPS5	chr8	67963532	-
5CDS-intron	ENST00000397298	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397298	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397298	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397298	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397298	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381519	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381519	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381519	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000381519	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000381519	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397297	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397297	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397297	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397297	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397297	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381514	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381514	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000381514	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000381514	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000381514	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397294	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397294	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-intron	ENST00000397294	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397294	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
5CDS-5UTR	ENST00000397294	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
3UTR-intron	ENST00000486931	ENST00000302182		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
3UTR-intron	ENST00000486931	ENST00000535788		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
3UTR-intron	ENST00000486931	ENST00000578649		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
3UTR-5UTR	ENST00000486931	ENST00000395839		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
3UTR-5UTR	ENST00000486931	ENST00000395837		ChiTaRS3.1			BU596366	MRPL23	chr11	1972186	+	UBB	chr17	16284717	+
intron-3UTR	ENST00000545260	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545260	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545260	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545260	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545260	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545260	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545260	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545260	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000545260	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545693	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545693	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545693	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000545693	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545693	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545693	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545693	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000545693	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000545693	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000350537	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000350537	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000350537	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000350537	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000350537	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000350537	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000350537	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000350537	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000350537	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000346874	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000346874	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000346874	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000346874	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000346874	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000346874	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000346874	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000346874	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000346874	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374789	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374789	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374789	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374789	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374789	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374789	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374789	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374789	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374789	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374790	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374790	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374790	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374790	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374790	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374790	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374790	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374790	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374790	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374794	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374794	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374794	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374794	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374794	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374794	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374794	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374794	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374794	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374788	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374788	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374788	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374788	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374788	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374788	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374788	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374788	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374788	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000466092	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000466092	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000466092	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000466092	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000466092	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000466092	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000466092	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000466092	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000466092	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374776	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374776	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374776	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374776	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374776	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374776	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374776	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374776	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374776	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000340077	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000340077	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000340077	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000340077	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000340077	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000340077	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000340077	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000340077	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000340077	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000544292	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000544292	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000544292	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000544292	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000544292	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000544292	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000544292	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000544292	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000544292	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374773	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374773	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374773	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374773	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374773	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374773	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374773	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374773	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374773	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374768	ENST00000347401		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374768	ENST00000353578		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374768	ENST00000295550		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000374768	ENST00000472056		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374768	ENST00000409809		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374768	ENST00000346358		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374768	ENST00000392004		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-intron	ENST00000374768	ENST00000392003		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-5UTR	ENST00000374768	ENST00000473258		ChiTaRS3.1			BE840726	PARD3	chr10	34896477	-	COL6A3	chr2	238233127	+
intron-3UTR	ENST00000439040	ENST00000439040		ChiTaRS3.1			BU156006	ATP13A3	chr3	194124296	+	ATP13A3	chr3	194124278	-
intron-3UTR	ENST00000439040	ENST00000256031		ChiTaRS3.1			BU156006	ATP13A3	chr3	194124296	+	ATP13A3	chr3	194124278	-
intron-3UTR	ENST00000256031	ENST00000439040		ChiTaRS3.1			BU156006	ATP13A3	chr3	194124296	+	ATP13A3	chr3	194124278	-
intron-3UTR	ENST00000256031	ENST00000256031		ChiTaRS3.1			BU156006	ATP13A3	chr3	194124296	+	ATP13A3	chr3	194124278	-
intron-intron	ENST00000225972	ENST00000425019		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000324219		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000350198		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000302217		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000225972	ENST00000413150		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000347699		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000225972	ENST00000456652		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000350878		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000225972	ENST00000498066		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000425019		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000324219		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000350198		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000302217		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000576448	ENST00000413150		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000347699		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000576448	ENST00000456652		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000350878		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-intron	ENST00000576448	ENST00000498066		ChiTaRS3.1			BF795076	LRRC59	chr17	48469810	-	MAP4K4	chr2	102508384	+
intron-3UTR	ENST00000452201	ENST00000452201		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000452201	ENST00000398417		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000452201	ENST00000342988		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000452201	ENST00000588745		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-intron	ENST00000452201	ENST00000586253		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000398417	ENST00000452201		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000398417	ENST00000398417		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000398417	ENST00000342988		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000398417	ENST00000588745		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-intron	ENST00000398417	ENST00000586253		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000342988	ENST00000452201		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000342988	ENST00000398417		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000342988	ENST00000342988		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-3UTR	ENST00000342988	ENST00000588745		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
5CDS-intron	ENST00000342988	ENST00000586253		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000588745	ENST00000452201		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000588745	ENST00000398417		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000588745	ENST00000342988		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000588745	ENST00000588745		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-intron	ENST00000588745	ENST00000586253		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000586253	ENST00000452201		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000586253	ENST00000398417		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000586253	ENST00000342988		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000586253	ENST00000588745		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-intron	ENST00000586253	ENST00000586253		ChiTaRS3.1			AL047996	SMAD4	chr18	48584767	+	SMAD4	chr18	48581311	-
intron-3UTR	ENST00000396029	ENST00000378344		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000396029	ENST00000344579		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000396032	ENST00000378344		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000396032	ENST00000344579		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000371602	ENST00000378344		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000371602	ENST00000344579		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000349014	ENST00000378344		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-3UTR	ENST00000349014	ENST00000344579		ChiTaRS3.1			BF038276	ADNP	chr20	49507685	+	TPRG1L	chr1	3545486	+
intron-intron	ENST00000393701	ENST00000405995		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000393701	ENST00000357304		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000393701	ENST00000458550		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000393701	ENST00000372249		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000393701	ENST00000465931		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000568461	ENST00000405995		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000568461	ENST00000357304		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000568461	ENST00000458550		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000568461	ENST00000372249		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000568461	ENST00000465931		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000288040	ENST00000405995		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000288040	ENST00000357304		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000288040	ENST00000458550		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000288040	ENST00000372249		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000288040	ENST00000465931		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000449317	ENST00000405995		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000449317	ENST00000357304		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000449317	ENST00000458550		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000449317	ENST00000372249		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
intron-intron	ENST00000449317	ENST00000465931		ChiTaRS3.1			BF931966	CLEC18A	chr16	70043407	-	PRRC2B	chr9	134364824	+
In-frame	ENST00000397821	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000397821	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000397821	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000397821	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000397821	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000397821	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-3CDS	ENST00000379716	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000379716	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000379716	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000379716	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000379716	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000379716	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
In-frame	ENST00000379698	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379698	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379698	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379698	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379698	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379698	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-3CDS	ENST00000541422	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000541422	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000541422	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000541422	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000541422	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000541422	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
In-frame	ENST00000379697	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379697	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379697	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379697	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379697	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-intron	ENST00000379697	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-3CDS	ENST00000477102	ENST00000397821		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000477102	ENST00000379716		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000477102	ENST00000379698		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000477102	ENST00000541422		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000477102	ENST00000379697		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
intron-intron	ENST00000477102	ENST00000477102		ChiTaRS3.1			BF810476	SH3KBP1	chrX	19701938	-	SH3KBP1	chrX	19713861	-
5CDS-3UTR	ENST00000357710	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000357710	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000324501	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000324501	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000344094	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000344094	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000261970	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000261970	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000394164	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394164	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000557511	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000557511	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000406768	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000406768	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-3UTR	ENST00000394157	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
5CDS-intron	ENST00000394157	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-3UTR	ENST00000553447	ENST00000375749		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000375730		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000539210		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-intron	ENST00000553447	ENST00000486717		ChiTaRS3.1			AW374386	PSEN1	chr14	73640298	+	POFUT1	chr20	30823405	+
intron-3UTR	ENST00000426898	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-intron	ENST00000426898	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-3UTR	ENST00000425752	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-intron	ENST00000425752	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-3UTR	ENST00000423947	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-intron	ENST00000423947	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-3UTR	ENST00000435642	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-intron	ENST00000435642	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-3UTR	ENST00000320560	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-intron	ENST00000320560	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-3UTR	ENST00000441606	ENST00000367511		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
3UTR-intron	ENST00000441606	ENST00000487074		ChiTaRS3.1			BF858626	ANO6	chr12	45823890	-	FAM129A	chr1	184760983	-
intron-intron	ENST00000406337	ENST00000262367		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000406337	ENST00000382070		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000265713	ENST00000262367		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000265713	ENST00000382070		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000396930	ENST00000262367		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000396930	ENST00000382070		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000485568	ENST00000262367		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000485568	ENST00000382070		ChiTaRS3.1			AJ315154	KAT6A	chr8	41792414	-	CREBBP	chr16	3926814	-
intron-intron	ENST00000371000	ENST00000378330		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000371000	ENST00000301030		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000371000	ENST00000563291		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000371000	ENST00000567736		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000262345	ENST00000378330		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000262345	ENST00000301030		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000262345	ENST00000563291		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000262345	ENST00000567736		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000541374	ENST00000378330		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000541374	ENST00000301030		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000541374	ENST00000563291		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000541374	ENST00000567736		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000544434	ENST00000378330		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000544434	ENST00000301030		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000544434	ENST00000563291		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000544434	ENST00000567736		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000465396	ENST00000378330		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000465396	ENST00000301030		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000465396	ENST00000563291		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000465396	ENST00000567736		ChiTaRS3.1			AI831536	IL12RB2	chr1	67776662	-	ANKRD11	chr16	89368926	+
intron-intron	ENST00000392650	ENST00000392650		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000392650	ENST00000388726		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000392650	ENST00000410094		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000388726	ENST00000392650		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000388726	ENST00000388726		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000388726	ENST00000410094		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000410094	ENST00000392650		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000410094	ENST00000388726		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000410094	ENST00000410094		ChiTaRS3.1			AK025096	SDK2	chr17	71623949	+	SDK2	chr17	71622867	+
intron-intron	ENST00000487159	ENST00000360453		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000487159	ENST00000394320		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000487159	ENST00000461780		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000487159	ENST00000309241		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000487159	ENST00000403750		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000327628	ENST00000360453		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000327628	ENST00000394320		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000327628	ENST00000461780		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000327628	ENST00000309241		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000327628	ENST00000403750		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000449246	ENST00000360453		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000449246	ENST00000394320		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000449246	ENST00000461780		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000449246	ENST00000309241		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000449246	ENST00000403750		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000341421	ENST00000360453		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000341421	ENST00000394320		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000341421	ENST00000461780		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000341421	ENST00000309241		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000341421	ENST00000403750		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000396175	ENST00000360453		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000396175	ENST00000394320		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000396175	ENST00000461780		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000396175	ENST00000309241		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000396175	ENST00000403750		ChiTaRS3.1			BF361916	TRAK1	chr3	42256906	+	PPARGC1B	chr5	149209185	+
intron-intron	ENST00000392870	ENST00000412145		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000392870	ENST00000446349		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000392870	ENST00000374541		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000392870	ENST00000262539		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000392870	ENST00000394827		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000392870	ENST00000497739		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000412145		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000446349		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000374541		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000262539		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000394827		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000369108	ENST00000497739		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000412145		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000446349		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000374541		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000262539		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000394827		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000473264	ENST00000497739		ChiTaRS3.1			BG004546	GRK5	chr10	121187592	-	PTPN3	chr9	112210802	+
intron-intron	ENST00000310343	ENST00000303113		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000310343	ENST00000453626		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000310343	ENST00000303071		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000310343	ENST00000432378		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000524655	ENST00000303113		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000524655	ENST00000453626		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000524655	ENST00000303071		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000524655	ENST00000432378		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000392657	ENST00000303113		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000392657	ENST00000453626		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000392657	ENST00000303071		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000392657	ENST00000432378		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000527272	ENST00000303113		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000527272	ENST00000453626		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000527272	ENST00000303071		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-intron	ENST00000527272	ENST00000432378		ChiTaRS3.1			BE817796	ARHGAP32	chr11	128838183	-	DONSON	chr21	35153717	+
intron-3CDS	ENST00000378814	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378814	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378814	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378814	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378814	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378814	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378814	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000259711	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000259711	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000259711	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000259711	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000259711	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000259711	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000259711	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378843	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378843	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378843	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378843	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378843	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378843	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378843	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378826	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378826	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378826	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378826	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378826	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378826	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378826	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378816	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378816	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378816	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378816	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000378816	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378816	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000378816	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000502704	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000502704	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000502704	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000502704	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000502704	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000502704	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000502704	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000503342	ENST00000378814		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000503342	ENST00000259711		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000503342	ENST00000378843		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000503342	ENST00000378826		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-3CDS	ENST00000503342	ENST00000378816		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000503342	ENST00000502704		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
intron-intron	ENST00000503342	ENST00000503342		ChiTaRS3.1			BF357666	KIF13A	chr6	17831343	-	KIF13A	chr6	17826109	+
3UTR-3UTR	ENST00000262461	ENST00000432648		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
3UTR-intron	ENST00000262461	ENST00000446189		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
3UTR-intron	ENST00000262461	ENST00000372984		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-3UTR	ENST00000343225	ENST00000432648		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-intron	ENST00000343225	ENST00000446189		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-intron	ENST00000343225	ENST00000372984		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-3UTR	ENST00000507791	ENST00000432648		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-intron	ENST00000507791	ENST00000446189		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-intron	ENST00000507791	ENST00000372984		ChiTaRS3.1			AI686136	SLC12A2	chr5	127524250	-	AKIRIN1	chr1	39470702	-
intron-intron	ENST00000412585	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000412585	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000412585	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000425848	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000425848	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000425848	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000450871	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000450871	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000450871	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000359635	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000359635	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000359635	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000435618	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000435618	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000435618	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000421349	ENST00000512453		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-3UTR	ENST00000421349	ENST00000282356		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-intron	ENST00000421349	ENST00000512890		ChiTaRS3.1			DB344026	HLA-B	chr6	2655538	+	CAMK4	chr5	110820690	-
intron-5UTR	ENST00000540664	ENST00000528737		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000420244		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000529985		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000361723		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000540664	ENST00000533703		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000531147		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371103	ENST00000528737		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000420244		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000529985		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000361723		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371103	ENST00000533703		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000531147		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000356016	ENST00000528737		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000420244		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000529985		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000361723		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000356016	ENST00000533703		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000531147		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371097	ENST00000528737		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000420244		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000529985		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000361723		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371097	ENST00000533703		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000531147		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000498444	ENST00000528737		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000420244		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000529985		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000361723		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000498444	ENST00000533703		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000531147		ChiTaRS3.1			AW851196	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
In-frame	ENST00000398958	ENST00000398958		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000398958	ENST00000373833		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000398958	ENST00000373832		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000398958	ENST00000373831		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
5CDS-intron	ENST00000398958	ENST00000429051		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
Frame-shit	ENST00000373833	ENST00000398958		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
Frame-shit	ENST00000373833	ENST00000373833		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
Frame-shit	ENST00000373833	ENST00000373832		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
Frame-shit	ENST00000373833	ENST00000373831		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
5CDS-intron	ENST00000373833	ENST00000429051		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373832	ENST00000398958		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373832	ENST00000373833		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373832	ENST00000373832		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373832	ENST00000373831		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
5CDS-intron	ENST00000373832	ENST00000429051		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373831	ENST00000398958		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373831	ENST00000373833		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373831	ENST00000373832		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
In-frame	ENST00000373831	ENST00000373831		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
5CDS-intron	ENST00000373831	ENST00000429051		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
intron-3CDS	ENST00000429051	ENST00000398958		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
intron-3CDS	ENST00000429051	ENST00000373833		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
intron-3CDS	ENST00000429051	ENST00000373832		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
intron-3CDS	ENST00000429051	ENST00000373831		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
intron-intron	ENST00000429051	ENST00000429051		ChiTaRS3.1			AW579236	RCC1	chr1	28864439	-	RCC1	chr1	28863343	+
3UTR-3UTR	ENST00000265192	ENST00000265192		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000265192	ENST00000511381		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000265192	ENST00000511706		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-3UTR	ENST00000265192	ENST00000394795		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000265192	ENST00000510080		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000511381	ENST00000265192		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511381	ENST00000511381		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511381	ENST00000511706		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000511381	ENST00000394795		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511381	ENST00000510080		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000511706	ENST00000265192		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511706	ENST00000511381		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511706	ENST00000511706		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000511706	ENST00000394795		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000511706	ENST00000510080		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-3UTR	ENST00000394795	ENST00000265192		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000394795	ENST00000511381		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000394795	ENST00000511706		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-3UTR	ENST00000394795	ENST00000394795		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
3UTR-intron	ENST00000394795	ENST00000510080		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000510080	ENST00000265192		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000510080	ENST00000511381		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000510080	ENST00000511706		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-3UTR	ENST00000510080	ENST00000394795		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000510080	ENST00000510080		ChiTaRS3.1			AA828706	PAIP2	chr5	138705190	+	PAIP2	chr5	138705164	-
intron-intron	ENST00000548589	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-3UTR	ENST00000548589	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000552699	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000552699	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000267115	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000267115	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000549385	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000549385	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000423828	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000423828	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000395006	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000395006	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-intron	ENST00000547798	ENST00000548589		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000552699		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000267115		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000549385		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000423828		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000395006		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
3UTR-3UTR	ENST00000547798	ENST00000547798		ChiTaRS3.1			CA944946	TMBIM6	chr12	50158262	-	TMBIM6	chr12	50158155	+
intron-intron	ENST00000285238	ENST00000285238		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000515707		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000427699		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000285238	ENST00000510891		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000285238		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000515707		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000427699		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000515707	ENST00000510891		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000285238		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000515707		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000427699		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000427699	ENST00000510891		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000285238		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000515707		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000427699		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000510891	ENST00000510891		ChiTaRS3.1			AI905516	ABCC3	chr17	48724032	-	ABCC3	chr17	48724397	+
intron-intron	ENST00000376462	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376462	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000481700	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000458595	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376454	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376452	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000430453	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000307544	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396446	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000396445	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000324589		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000349752		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000406653		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000356174		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000420311		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
intron-intron	ENST00000376451	ENST00000486564		ChiTaRS3.1			BQ358366	KIAA1217	chr10	24799687	+	GALNT14	chr2	31376070	-
Frame-shit	ENST00000351396	ENST00000351396		ChiTaRS3.1			BQ220956	TAF5	chr10	105138290	-	TAF5	chr10	105128268	+
Frame-shit	ENST00000351396	ENST00000369839		ChiTaRS3.1			BQ220956	TAF5	chr10	105138290	-	TAF5	chr10	105128268	+
Frame-shit	ENST00000369839	ENST00000351396		ChiTaRS3.1			BQ220956	TAF5	chr10	105138290	-	TAF5	chr10	105128268	+
Frame-shit	ENST00000369839	ENST00000369839		ChiTaRS3.1			BQ220956	TAF5	chr10	105138290	-	TAF5	chr10	105128268	+
intron-intron	ENST00000373886	ENST00000336934		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000373886	ENST00000255486		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000373886	ENST00000399365		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000373886	ENST00000487412		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000373886	ENST00000439831		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000263103	ENST00000336934		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000263103	ENST00000255486		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000263103	ENST00000399365		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000263103	ENST00000487412		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000263103	ENST00000439831		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000476684	ENST00000336934		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000476684	ENST00000255486		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000476684	ENST00000399365		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000476684	ENST00000487412		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-intron	ENST00000476684	ENST00000439831		ChiTaRS3.1			BE143606	BICC1	chr10	60563627	-	STARD13	chr13	33949231	-
intron-3CDS	ENST00000331803	ENST00000331803		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000331803	ENST00000341253		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000331803	ENST00000395564		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000331803	ENST00000482015		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000331803	ENST00000429491		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000341253	ENST00000331803		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000341253	ENST00000341253		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000341253	ENST00000395564		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000341253	ENST00000482015		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000341253	ENST00000429491		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000395564	ENST00000331803		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000395564	ENST00000341253		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000395564	ENST00000395564		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000395564	ENST00000482015		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000395564	ENST00000429491		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000482015	ENST00000331803		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000482015	ENST00000341253		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000482015	ENST00000395564		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000482015	ENST00000482015		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000482015	ENST00000429491		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000429491	ENST00000331803		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000429491	ENST00000341253		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-3CDS	ENST00000429491	ENST00000395564		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000429491	ENST00000482015		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000429491	ENST00000429491		ChiTaRS3.1			BG012356	UPP1	chr7	48134359	-	UPP1	chr7	48141530	-
intron-intron	ENST00000361204	ENST00000336470		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
intron-intron	ENST00000361204	ENST00000360845		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
intron-intron	ENST00000361204	ENST00000489691		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
intron-intron	ENST00000491541	ENST00000336470		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
intron-intron	ENST00000491541	ENST00000360845		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
intron-intron	ENST00000491541	ENST00000489691		ChiTaRS3.1			AW848316	SREBF2	chr22	42290161	-	GNL3L	chrX	54588863	+
3UTR-3UTR	ENST00000273590	ENST00000273590		ChiTaRS3.1			BE693236	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
3UTR-intron	ENST00000273590	ENST00000493381		ChiTaRS3.1			BE693236	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-3UTR	ENST00000493381	ENST00000273590		ChiTaRS3.1			BE693236	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-intron	ENST00000493381	ENST00000493381		ChiTaRS3.1			BE693236	TCTA	chr3	49453370	-	TCTA	chr3	49453527	+
intron-3UTR	ENST00000376048	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000376048	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000376048	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000376048	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000376048	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000311066	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000311066	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000311066	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000311066	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000311066	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000235372	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000235372	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000235372	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000235372	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000235372	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000502727	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000502727	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000502727	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000502727	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000502727	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000413440	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000413440	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000413440	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000413440	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000413440	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000343137	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000343137	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000343137	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000343137	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000343137	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000503842	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000503842	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000503842	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000503842	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000503842	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000505823	ENST00000418917		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000505823	ENST00000490574		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000505823	ENST00000240851		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000505823	ENST00000476228		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
intron-3UTR	ENST00000505823	ENST00000481203		ChiTaRS3.1			BE766416	PRDM2	chr1	14126665	+	TFG	chr3	100467558	-
In-frame	ENST00000535458	ENST00000535458		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000535458	ENST00000290158		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000535458	ENST00000540627		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000535458	ENST00000537679		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
5CDS-intron	ENST00000535458	ENST00000577918		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000290158	ENST00000535458		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000290158	ENST00000290158		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000290158	ENST00000540627		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000290158	ENST00000537679		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
5CDS-intron	ENST00000290158	ENST00000577918		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000540627	ENST00000535458		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000540627	ENST00000290158		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000540627	ENST00000540627		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000540627	ENST00000537679		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
5CDS-intron	ENST00000540627	ENST00000577918		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000537679	ENST00000535458		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000537679	ENST00000290158		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000537679	ENST00000540627		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000537679	ENST00000537679		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
5CDS-intron	ENST00000537679	ENST00000577918		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
intron-3CDS	ENST00000577918	ENST00000535458		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
intron-3CDS	ENST00000577918	ENST00000290158		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
intron-3CDS	ENST00000577918	ENST00000540627		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
intron-3CDS	ENST00000577918	ENST00000537679		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
intron-intron	ENST00000577918	ENST00000577918		ChiTaRS3.1			BE897946	KPNB1	chr17	45745707	-	KPNB1	chr17	45745755	+
In-frame	ENST00000237014	ENST00000535458		ChiTaRS3.1			BE466906	TTR	chr18	29175092	-	KPNB1	chr17	45755706	-
In-frame	ENST00000237014	ENST00000290158		ChiTaRS3.1			BE466906	TTR	chr18	29175092	-	KPNB1	chr17	45755706	-
In-frame	ENST00000237014	ENST00000540627		ChiTaRS3.1			BE466906	TTR	chr18	29175092	-	KPNB1	chr17	45755706	-
In-frame	ENST00000237014	ENST00000537679		ChiTaRS3.1			BE466906	TTR	chr18	29175092	-	KPNB1	chr17	45755706	-
5CDS-intron	ENST00000237014	ENST00000577918		ChiTaRS3.1			BE466906	TTR	chr18	29175092	-	KPNB1	chr17	45755706	-
5UTR-5UTR	ENST00000402989	ENST00000380393		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000216877		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000358719		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000399903		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000425918		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000318266		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000402989	ENST00000356147		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000380393		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000216877		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000358719		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000399903		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000425918		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000318266		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000448223	ENST00000356147		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000380393		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000216877		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000358719		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000399903		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000425918		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000318266		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000351948	ENST00000356147		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000380393		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000216877		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000358719		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000399903		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000425918		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000318266		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-5UTR	ENST00000381272	ENST00000356147		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000380393		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000216877		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000358719		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000399903		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000425918		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000318266		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
5UTR-5UTR	ENST00000489535	ENST00000356147		ChiTaRS3.1			DA756796	SMC6	chr2	17980902	-	PTPRA	chr20	2903852	+
intron-intron	ENST00000409262	ENST00000398051		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000398052		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000504933		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000345167		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000503518		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000442472		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000409262	ENST00000509545		ChiTaRS3.1			BF355916	TET3	chr2	74308279	-	GRK4	chr4	3039863	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			DW411476	NEAT1	chr11	65191054	+	NEAT1	chr11	65190595	+
intron-intron	ENST00000356951	ENST00000392347		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000356951	ENST00000389641		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000356951	ENST00000392346		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000356951	ENST00000327026		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000356951	ENST00000392343		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000298510	ENST00000392347		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000298510	ENST00000389641		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000298510	ENST00000392346		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000298510	ENST00000327026		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000298510	ENST00000392343		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000494433	ENST00000392347		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000494433	ENST00000389641		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000494433	ENST00000392346		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000494433	ENST00000327026		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
intron-intron	ENST00000494433	ENST00000392343		ChiTaRS3.1			AW861786	PRDX3	chr10	120927627	-	CCDC57	chr17	80082299	+
5CDS-intron	ENST00000344691	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000344691	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000344691	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000325074	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000325074	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000325074	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000437180	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000437180	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000437180	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000300305	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000300305	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000300305	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000399240	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000399240	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000399240	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000486278	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000486278	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000486278	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
intron-intron	ENST00000494829	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
intron-intron	ENST00000494829	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
intron-intron	ENST00000494829	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000358356	ENST00000301295		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000358356	ENST00000346986		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000358356	ENST00000587891		ChiTaRS3.1			AF312386	RUNX1	chr21	36231771	-	NLRP4	chr19	56392775	-
5CDS-intron	ENST00000380518	ENST00000591263		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000588504		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000590100		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000585346		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000592422		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000588698		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000588160		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000585780		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000586450		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000380518	ENST00000585351		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000591263		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000588504		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000590100		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000585346		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000592422		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000588698		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000588160		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000585780		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000586450		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000493991	ENST00000585351		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000591263		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000588504		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000590100		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000585346		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000592422		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000588698		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000588160		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000585780		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000586450		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
5CDS-intron	ENST00000337299	ENST00000585351		ChiTaRS3.1			CN278386	COL2A1	chr12	48388206	-	MAP3K14-AS1	chr17	43337533	-
intron-intron	ENST00000272227	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000272227	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404371	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000404824	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000540494	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000381611	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000286122		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000355163		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000479780		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000393208		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000355022		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000538234		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000393207		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000489662	ENST00000481948		ChiTaRS3.1			BM852926	PDIA6	chr2	10929937	-	BANP	chr16	87985724	+
intron-intron	ENST00000455611	ENST00000455611		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000455611	ENST00000454497		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000455611	ENST00000447906		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000455611	ENST00000509620		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000455611	ENST00000296579		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000454497	ENST00000455611		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000454497	ENST00000454497		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000454497	ENST00000447906		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000454497	ENST00000509620		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000454497	ENST00000296579		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000447906	ENST00000455611		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000447906	ENST00000454497		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000447906	ENST00000447906		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000447906	ENST00000509620		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000447906	ENST00000296579		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000509620	ENST00000455611		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000509620	ENST00000454497		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000509620	ENST00000447906		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000509620	ENST00000509620		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000509620	ENST00000296579		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000296579	ENST00000455611		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000296579	ENST00000454497		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000296579	ENST00000447906		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000296579	ENST00000509620		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000296579	ENST00000296579		ChiTaRS3.1			DW427746	OTUD4	chr4	146094939	-	OTUD4	chr4	146095464	-
intron-intron	ENST00000460259	ENST00000417009		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000460259	ENST00000444799		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-3UTR	ENST00000460259	ENST00000413065		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000460259	ENST00000248566		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000460259	ENST00000493858		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000354250	ENST00000417009		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000354250	ENST00000444799		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-3UTR	ENST00000354250	ENST00000413065		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000354250	ENST00000248566		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000354250	ENST00000493858		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
3UTR-intron	ENST00000340344	ENST00000417009		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
3UTR-intron	ENST00000340344	ENST00000444799		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
3UTR-3UTR	ENST00000340344	ENST00000413065		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
3UTR-intron	ENST00000340344	ENST00000248566		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
3UTR-intron	ENST00000340344	ENST00000493858		ChiTaRS3.1			CD367876	NDUFV3	chr21	44329523	-	SHFM1	chr7	96302807	+
intron-intron	ENST00000403729	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000403729	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000403729	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000403729	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000403729	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000403729	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000482406	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000404191	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000346652	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000307333	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000403729		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000482406		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000404191		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000346652		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000307333		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
intron-intron	ENST00000295465	ENST00000295465		ChiTaRS3.1			AI000346	ANTXR2	chr4	80956488	-	ANTXR2	chr4	80956670	+
3UTR-3UTR	ENST00000404826	ENST00000404826		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000404826	ENST00000389531		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000404826	ENST00000466611		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000389531	ENST00000404826		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000389531	ENST00000389531		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000389531	ENST00000466611		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000466611	ENST00000404826		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000466611	ENST00000389531		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
3UTR-3UTR	ENST00000466611	ENST00000466611		ChiTaRS3.1			AL042166	SDK1	chr7	4305561	-	SDK1	chr7	4305794	+
intron-intron	ENST00000227638	ENST00000227638		ChiTaRS3.1			AI732676	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000227638	ENST00000436171		ChiTaRS3.1			AI732676	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000227638		ChiTaRS3.1			AI732676	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
intron-intron	ENST00000436171	ENST00000436171		ChiTaRS3.1			AI732676	PANX1	chr11	93867488	+	PANX1	chr11	93867609	-
5CDS-intron	ENST00000246548	ENST00000370551		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000246548	ENST00000370550		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000246548	ENST00000356813		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000439527	ENST00000370551		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000439527	ENST00000370550		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000439527	ENST00000356813		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000592791	ENST00000370551		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000592791	ENST00000370550		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
5CDS-intron	ENST00000592791	ENST00000356813		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
intron-intron	ENST00000588585	ENST00000370551		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
intron-intron	ENST00000588585	ENST00000370550		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
intron-intron	ENST00000588585	ENST00000356813		ChiTaRS3.1			BP376296	UBA2	chr19	34955033	+	HS2ST1	chr1	87511808	+
3UTR-3UTR	ENST00000468643	ENST00000468643		ChiTaRS3.1			AW969796	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000468643	ENST00000400577		ChiTaRS3.1			AW969796	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000468643		ChiTaRS3.1			AW969796	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
3UTR-3UTR	ENST00000400577	ENST00000400577		ChiTaRS3.1			AW969796	RBM11	chr21	15600323	+	RBM11	chr21	15600400	-
Frame-shit	ENST00000360876	ENST00000360876		ChiTaRS3.1			BF813436	EIF3B	chr7	2416672	-	EIF3B	chr7	2419115	-
Frame-shit	ENST00000360876	ENST00000397011		ChiTaRS3.1			BF813436	EIF3B	chr7	2416672	-	EIF3B	chr7	2419115	-
Frame-shit	ENST00000397011	ENST00000360876		ChiTaRS3.1			BF813436	EIF3B	chr7	2416672	-	EIF3B	chr7	2419115	-
Frame-shit	ENST00000397011	ENST00000397011		ChiTaRS3.1			BF813436	EIF3B	chr7	2416672	-	EIF3B	chr7	2419115	-
Frame-shit	ENST00000323699	ENST00000323699		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
Frame-shit	ENST00000323699	ENST00000391877		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
5CDS-3UTR	ENST00000323699	ENST00000465848		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
Frame-shit	ENST00000391877	ENST00000323699		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
Frame-shit	ENST00000391877	ENST00000391877		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
5CDS-3UTR	ENST00000391877	ENST00000465848		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
3UTR-3CDS	ENST00000465848	ENST00000323699		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
3UTR-3CDS	ENST00000465848	ENST00000391877		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
3UTR-3UTR	ENST00000465848	ENST00000465848		ChiTaRS3.1			AL079576	DEGS1	chr1	224377681	-	DEGS1	chr1	224377728	+
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			BE466786	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
3UTR-3UTR	ENST00000381873	ENST00000296755		ChiTaRS3.1			M61996	SNPH	chr20	1287895	-	MAP1B	chr5	71504819	+
3UTR-intron	ENST00000381873	ENST00000504183		ChiTaRS3.1			M61996	SNPH	chr20	1287895	-	MAP1B	chr5	71504819	+
3UTR-3UTR	ENST00000381867	ENST00000296755		ChiTaRS3.1			M61996	SNPH	chr20	1287895	-	MAP1B	chr5	71504819	+
3UTR-intron	ENST00000381867	ENST00000504183		ChiTaRS3.1			M61996	SNPH	chr20	1287895	-	MAP1B	chr5	71504819	+
intron-intron	ENST00000358183	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000358183	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000358183	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000414043	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000414043	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000414043	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000361571	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000361571	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000361571	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000572543	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000572543	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000572543	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000381311	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000381311	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000381311	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000348066	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000348066	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000348066	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000571831	ENST00000230895		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000571831	ENST00000432074		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000571831	ENST00000510546		ChiTaRS3.1			BQ336206	CAMTA2	chr17	4884644	+	DAP	chr5	10755618	+
intron-intron	ENST00000415676	ENST00000415676		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000415676	ENST00000288197		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000415676	ENST00000474759		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000415676	ENST00000490478		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000415676	ENST00000478261		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000288197	ENST00000415676		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000288197	ENST00000288197		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000288197	ENST00000474759		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000288197	ENST00000490478		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000288197	ENST00000478261		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000474759	ENST00000415676		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000474759	ENST00000288197		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000474759	ENST00000474759		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000474759	ENST00000490478		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000474759	ENST00000478261		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000490478	ENST00000415676		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000490478	ENST00000288197		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000490478	ENST00000474759		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000490478	ENST00000490478		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000490478	ENST00000478261		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000478261	ENST00000415676		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000478261	ENST00000288197		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000478261	ENST00000474759		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000478261	ENST00000490478		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000478261	ENST00000478261		ChiTaRS3.1			AL120186	CACNA2D3	chr3	54413060	-	CACNA2D3	chr3	54412930	+
intron-intron	ENST00000381786	ENST00000509603		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000381786	ENST00000319524		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000381786	ENST00000268763		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-3UTR	ENST00000381786	ENST00000398988		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000381786	ENST00000581975		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000381786	ENST00000582410		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000381786	ENST00000578981		ChiTaRS3.1			BF933786	C2orf48	chr2	10336052	-	KSR1	chr17	25952675	+
intron-intron	ENST00000254051	ENST00000254051		ChiTaRS3.1			DB361336	TNS4	chr17	38643129	+	TNS4	chr17	38638010	+
3UTR-3UTR	ENST00000404666	ENST00000314100		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-3UTR	ENST00000404666	ENST00000481247		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000404666	ENST00000419706		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000404666	ENST00000408958		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000404666	ENST00000403056		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-3UTR	ENST00000295156	ENST00000314100		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-3UTR	ENST00000295156	ENST00000481247		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000295156	ENST00000419706		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000295156	ENST00000408958		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000295156	ENST00000403056		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-3UTR	ENST00000406397	ENST00000314100		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-3UTR	ENST00000406397	ENST00000481247		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000406397	ENST00000419706		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000406397	ENST00000408958		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
3UTR-intron	ENST00000406397	ENST00000403056		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-3UTR	ENST00000483921	ENST00000314100		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-3UTR	ENST00000483921	ENST00000481247		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-intron	ENST00000483921	ENST00000419706		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-intron	ENST00000483921	ENST00000408958		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-intron	ENST00000483921	ENST00000403056		ChiTaRS3.1			DB301956	VSNL1	chr2	17836700	-	BTBD9	chr6	38141711	+
intron-intron	ENST00000256997	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000256997	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000256997	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000256997	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000256997	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529444	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529444	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529444	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529444	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529444	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000527256	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000527256	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000527256	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000527256	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000527256	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000537863	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000537863	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000537863	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000537863	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000537863	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000533929	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000533929	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000533929	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000533929	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000533929	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000525230	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000525230	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000525230	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000525230	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000525230	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000530453	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000530453	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000530453	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000530453	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000530453	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000444355	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000444355	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000444355	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000444355	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000444355	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529788	ENST00000525144		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529788	ENST00000529097		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529788	ENST00000525704		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529788	ENST00000533026		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
intron-intron	ENST00000529788	ENST00000416561		ChiTaRS3.1			AK097626	ACP2	chr11	47268438	-	KIRREL3	chr11	126793353	-
3UTR-3CDS	ENST00000518525	ENST00000263346		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
3UTR-intron	ENST00000518525	ENST00000563406		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
3UTR-intron	ENST00000518525	ENST00000263347		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
3UTR-3CDS	ENST00000265294	ENST00000263346		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
3UTR-intron	ENST00000265294	ENST00000563406		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
3UTR-intron	ENST00000265294	ENST00000263347		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-3CDS	ENST00000519385	ENST00000263346		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-intron	ENST00000519385	ENST00000563406		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-intron	ENST00000519385	ENST00000263347		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-3CDS	ENST00000519598	ENST00000263346		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-intron	ENST00000519598	ENST00000563406		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
intron-intron	ENST00000519598	ENST00000263347		ChiTaRS3.1			BE720256	GABRP	chr5	170240519	+	TCF25	chr16	89967056	-
In-frame	ENST00000338252	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000338252	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000338252	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000338252	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000338252	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508830	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508830	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508830	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508830	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000359176	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000359176	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000359176	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000359176	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000395812	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000395812	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000395812	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000395812	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000325674	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000325674	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000325674	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000325674	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000395813	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000395813	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000395813	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000395813	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000510756	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000510756	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000510756	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000510756	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000508608	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508608	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508608	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000508608	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000341926	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000341926	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000341926	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000341926	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511049	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511049	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511049	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511049	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000309190	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000309190	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000309190	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000309190	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000509903	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000509903	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000509903	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000509903	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000511782	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511782	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511782	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000511782	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
In-frame	ENST00000504465	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000504465	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000504465	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
5CDS-3UTR	ENST00000504465	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3CDS	ENST00000348386	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3UTR	ENST00000348386	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3UTR	ENST00000348386	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
3UTR-3UTR	ENST00000348386	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000508579	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000508579	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000508579	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000508579	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000338252		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000508830		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000359176		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000395812		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000325674		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000395813		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000510756		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000508608		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000341926		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000511049		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000309190		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000509903		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000511782		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3CDS	ENST00000515663	ENST00000504465		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000515663	ENST00000348386		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000515663	ENST00000508579		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-3UTR	ENST00000515663	ENST00000515663		ChiTaRS3.1			CB306886	CAST	chr5	96064893	-	CAST	chr5	96089796	-
intron-intron	ENST00000548898	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548898	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000548898	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548898	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000548898	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548898	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552067	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552067	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552067	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552067	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552067	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552067	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000420846	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000420846	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000420846	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000420846	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000420846	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000420846	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000548160	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548160	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000548160	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548160	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000548160	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000548160	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000546939	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000546939	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000546939	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000546939	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000546939	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000546939	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552692	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552692	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552692	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552692	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552692	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552692	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000549117	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000549117	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000549117	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000549117	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000549117	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000549117	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000257857	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000257857	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000257857	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000257857	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000257857	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000257857	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552754	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552754	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552754	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552754	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000552754	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000552754	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000550776	ENST00000392149		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000550776	ENST00000316950		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000550776	ENST00000392150		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000550776	ENST00000592490		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000550776	ENST00000589833		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-5UTR	ENST00000550776	ENST00000591073		ChiTaRS3.1			AA903666	CD63	chr12	56119617	+	ZNF569	chr19	37956290	+
intron-intron	ENST00000346169	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000346169	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000414031	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000392537	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000382330	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000350481	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000352767	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000427845	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000342981	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000319274	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000424196	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000411531	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000441154	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000434061	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000394036		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000394045		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000348459		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000371332		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000239026		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000394044		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-intron	ENST00000435046	ENST00000462057		ChiTaRS3.1			BE077006	EIF4G1	chr3	184052077	-	HELLS	chr10	96326248	-
intron-3CDS	ENST00000374332	ENST00000404535		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000374332	ENST00000288014		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374332	ENST00000556015		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374332	ENST00000554970		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374332	ENST00000554789		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000263979	ENST00000404535		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000263979	ENST00000288014		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000263979	ENST00000556015		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000263979	ENST00000554970		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000263979	ENST00000554789		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000473891	ENST00000404535		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000473891	ENST00000288014		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000473891	ENST00000556015		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000473891	ENST00000554970		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000473891	ENST00000554789		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000374329	ENST00000404535		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-3CDS	ENST00000374329	ENST00000288014		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374329	ENST00000556015		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374329	ENST00000554970		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000374329	ENST00000554789		ChiTaRS3.1			BI036406	MAN1C1	chr1	26034445	+	THTPA	chr14	24026315	+
intron-intron	ENST00000288398	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000288398	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000288398	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000288398	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000358278	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000358278	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000358278	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000358278	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560445	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560445	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560445	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560445	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000403994	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000403994	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000403994	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000403994	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000357980	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000357980	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000357980	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000357980	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559556	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559556	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559556	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559556	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559397	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559397	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559397	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559397	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000267996	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000267996	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000267996	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000267996	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000334895	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000334895	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000334895	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000334895	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000404484	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000404484	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000404484	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000404484	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560959	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560959	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560959	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000560959	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559281	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559281	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559281	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000559281	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000317516	ENST00000378300		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000317516	ENST00000378292		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000317516	ENST00000329305		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-intron	ENST00000317516	ENST00000360958		ChiTaRS3.1			BF371086	TPM1	chr15	63352487	+	TPM2	chr9	35683674	-
intron-3UTR	ENST00000337435	ENST00000356761		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000337435	ENST00000299397		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000337435	ENST00000342245		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000337435	ENST00000533196		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000337435	ENST00000527275		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000437912	ENST00000356761		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000437912	ENST00000299397		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000437912	ENST00000342245		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000437912	ENST00000533196		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000437912	ENST00000527275		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000538684	ENST00000356761		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000538684	ENST00000299397		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000538684	ENST00000342245		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000538684	ENST00000533196		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000538684	ENST00000527275		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000561183	ENST00000356761		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000561183	ENST00000299397		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3UTR	ENST00000561183	ENST00000342245		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000561183	ENST00000533196		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-intron	ENST00000561183	ENST00000527275		ChiTaRS3.1			AK057846	NIPA1	chr15	23044062	-	SMPD1	chr11	6416059	+
intron-3CDS	ENST00000433674	ENST00000175091		ChiTaRS3.1			BQ308066	CAPN2	chr1	223940501	-	LAPTM4A	chr2	20240665	+
intron-3CDS	ENST00000295006	ENST00000175091		ChiTaRS3.1			BQ308066	CAPN2	chr1	223940501	-	LAPTM4A	chr2	20240665	+
intron-3CDS	ENST00000474026	ENST00000175091		ChiTaRS3.1			BQ308066	CAPN2	chr1	223940501	-	LAPTM4A	chr2	20240665	+
intron-intron	ENST00000400926	ENST00000602399		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000400926	ENST00000402938		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000400926	ENST00000602808		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000341935	ENST00000602399		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000341935	ENST00000402938		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000341935	ENST00000602808		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000349984	ENST00000602399		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000349984	ENST00000402938		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
intron-intron	ENST00000349984	ENST00000602808		ChiTaRS3.1			AA016196	CCR6	chr6	167455506	-	GABRR2	chr6	89985350	+
3UTR-3UTR	ENST00000357681	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000357681	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000357681	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000357681	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000357681	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000357681	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000391954	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000391954	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000391954	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000391954	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000391954	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000391954	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367218	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367218	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367218	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367218	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000367218	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000367218	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367219	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367219	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367219	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-3UTR	ENST00000367219	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000367219	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
3UTR-intron	ENST00000367219	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000341360	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000341360	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000341360	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000341360	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-intron	ENST00000341360	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-intron	ENST00000341360	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000466407	ENST00000357681		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000466407	ENST00000391954		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000466407	ENST00000367218		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-3UTR	ENST00000466407	ENST00000367219		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-intron	ENST00000466407	ENST00000341360		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
intron-intron	ENST00000466407	ENST00000466407		ChiTaRS3.1			BU590066	ATP2B4	chr1	203712136	-	ATP2B4	chr1	203712053	+
In-frame	ENST00000344442	ENST00000344442		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000344442	ENST00000509061		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000344442	ENST00000324052		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
5CDS-intron	ENST00000344442	ENST00000503898		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000509061	ENST00000344442		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000509061	ENST00000509061		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000509061	ENST00000324052		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
5CDS-intron	ENST00000509061	ENST00000503898		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000324052	ENST00000344442		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000324052	ENST00000509061		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
In-frame	ENST00000324052	ENST00000324052		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
5CDS-intron	ENST00000324052	ENST00000503898		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
intron-3CDS	ENST00000503898	ENST00000344442		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
intron-3CDS	ENST00000503898	ENST00000509061		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
intron-3CDS	ENST00000503898	ENST00000324052		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
intron-intron	ENST00000503898	ENST00000503898		ChiTaRS3.1			AI565516	LARP7	chr4	113568393	-	LARP7	chr4	113568921	-
intron-intron	ENST00000255608	ENST00000330339		ChiTaRS3.1			BC004886	BTBD2	chr19	2003587	+	RPS17	chr15	83209190	-
intron-intron	ENST00000255608	ENST00000559187		ChiTaRS3.1			BC004886	BTBD2	chr19	2003587	+	RPS17	chr15	83209190	-
intron-intron	ENST00000590646	ENST00000330339		ChiTaRS3.1			BC004886	BTBD2	chr19	2003587	+	RPS17	chr15	83209190	-
intron-intron	ENST00000590646	ENST00000559187		ChiTaRS3.1			BC004886	BTBD2	chr19	2003587	+	RPS17	chr15	83209190	-
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW856576	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW856576	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW856576	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW856576	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000322313	ENST00000322313		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000322313	ENST00000393006		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000322313	ENST00000409658		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000393006	ENST00000322313		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000393006	ENST00000393006		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000393006	ENST00000409658		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000409658	ENST00000322313		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000409658	ENST00000393006		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000409658	ENST00000409658		ChiTaRS3.1			AA834856	WDR33	chr2	128491584	-	WDR33	chr2	128491352	+
intron-intron	ENST00000376980	ENST00000341911		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000316528		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000442647		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000367814		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000525369		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000534121		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000533624		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000534044		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000528774		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000531845		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000527615		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376980	ENST00000420123		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000341911		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000316528		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000442647		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000367814		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000525369		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000534121		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000533624		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000534044		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000528774		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000531845		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000527615		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000376946	ENST00000420123		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000341911		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000316528		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000442647		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000367814		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000525369		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000534121		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000533624		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000534044		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000528774		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000531845		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000527615		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
intron-intron	ENST00000483085	ENST00000420123		ChiTaRS3.1			AA807457	DNAJC1	chr10	22201941	+	MYB	chr6	135540310	-
3UTR-3CDS	ENST00000307365	ENST00000398519		ChiTaRS3.1			BE774996	DDIT4	chr10	74035365	-	CSNK1D	chr17	80210346	-
3UTR-3CDS	ENST00000307365	ENST00000314028		ChiTaRS3.1			BE774996	DDIT4	chr10	74035365	-	CSNK1D	chr17	80210346	-
3UTR-3CDS	ENST00000307365	ENST00000392334		ChiTaRS3.1			BE774996	DDIT4	chr10	74035365	-	CSNK1D	chr17	80210346	-
3UTR-5UTR	ENST00000307365	ENST00000578904		ChiTaRS3.1			BE774996	DDIT4	chr10	74035365	-	CSNK1D	chr17	80210346	-
intron-3UTR	ENST00000336861	ENST00000336861		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000336861	ENST00000246635		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000336861	ENST00000587544		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000336861	ENST00000587118		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000246635	ENST00000336861		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000246635	ENST00000246635		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000246635	ENST00000587544		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000246635	ENST00000587118		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000587544	ENST00000336861		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000587544	ENST00000246635		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000587544	ENST00000587544		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000587544	ENST00000587118		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000587118	ENST00000336861		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3UTR	ENST00000587118	ENST00000246635		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000587118	ENST00000587544		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-intron	ENST00000587118	ENST00000587118		ChiTaRS3.1			AW265406	KRT13	chr17	39657454	+	KRT13	chr17	39657505	-
intron-3CDS	ENST00000346693	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-3CDS	ENST00000370377	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-3CDS	ENST00000355149	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-3CDS	ENST00000437787	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-3CDS	ENST00000466436	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-3CDS	ENST00000320893	ENST00000355349		ChiTaRS3.1			BF826346	CD99L2	chrX	149935907	+	MYH7	chr14	23894585	-
intron-intron	ENST00000260327	ENST00000260327		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000260327	ENST00000396780		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000260327	ENST00000558966		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000260327	ENST00000558373		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000260327	ENST00000561189		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000396780	ENST00000260327		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000396780	ENST00000396780		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000396780	ENST00000558966		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000396780	ENST00000558373		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000396780	ENST00000561189		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558966	ENST00000260327		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558966	ENST00000396780		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558966	ENST00000558966		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558966	ENST00000558373		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558966	ENST00000561189		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558373	ENST00000260327		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558373	ENST00000396780		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558373	ENST00000558966		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558373	ENST00000558373		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000558373	ENST00000561189		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000561189	ENST00000260327		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000561189	ENST00000396780		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000561189	ENST00000558966		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000561189	ENST00000558373		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000561189	ENST00000561189		ChiTaRS3.1			AA007476	CTDSPL2	chr15	44730137	+	CTDSPL2	chr15	44724200	+
intron-intron	ENST00000356929	ENST00000420083		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000449870		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000318511		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000407004		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000589998		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000250241		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000592763		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000588657		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-intron	ENST00000356929	ENST00000590261		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
intron-3UTR	ENST00000356929	ENST00000586544		ChiTaRS3.1			BI037746	ZNF708	chr19	21479517	-	ILF3	chr19	10801555	+
5CDS-3UTR	ENST00000263174	ENST00000263174		ChiTaRS3.1			Z19266	PALMD	chr1	100154757	-	PALMD	chr1	100159658	-
5CDS-intron	ENST00000263174	ENST00000605497		ChiTaRS3.1			Z19266	PALMD	chr1	100154757	-	PALMD	chr1	100159658	-
5CDS-3UTR	ENST00000605497	ENST00000263174		ChiTaRS3.1			Z19266	PALMD	chr1	100154757	-	PALMD	chr1	100159658	-
5CDS-intron	ENST00000605497	ENST00000605497		ChiTaRS3.1			Z19266	PALMD	chr1	100154757	-	PALMD	chr1	100159658	-
intron-intron	ENST00000456935	ENST00000456935		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000456935	ENST00000221363		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000456935	ENST00000495617		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000221363	ENST00000456935		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000221363	ENST00000221363		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000221363	ENST00000495617		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000495617	ENST00000456935		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000495617	ENST00000221363		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000495617	ENST00000495617		ChiTaRS3.1			AI004606	MAN2B1	chr19	12769946	-	MAN2B1	chr19	12776046	-
intron-intron	ENST00000421745	ENST00000458591		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000421745	ENST00000421551		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000421745	ENST00000544052		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000421745	ENST00000541123		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000421745	ENST00000396629		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000421745	ENST00000554486		ChiTaRS3.1			BY795626	BIRC6	chr2	32733897	+	SCFD1	chr14	31117105	+
intron-intron	ENST00000396432	ENST00000329008		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000396432	ENST00000395275		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000396432	ENST00000395276		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000396432	ENST00000405452		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000396432	ENST00000412588		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000396432	ENST00000431984		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000329008		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000395275		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000395276		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000405452		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000412588		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000320481	ENST00000431984		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000329008		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000395275		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000395276		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000405452		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000412588		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-intron	ENST00000493154	ENST00000431984		ChiTaRS3.1			BF930876	ARHGAP21	chr10	24955256	-	CALN1	chr7	71511039	-
intron-3UTR	ENST00000380191	ENST00000380191		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-5UTR	ENST00000380191	ENST00000479928		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380191	ENST00000380132		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380191	ENST00000380181		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-3UTR	ENST00000479928	ENST00000380191		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-5UTR	ENST00000479928	ENST00000479928		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000479928	ENST00000380132		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000479928	ENST00000380181		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-3UTR	ENST00000380132	ENST00000380191		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-5UTR	ENST00000380132	ENST00000479928		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380132	ENST00000380132		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380132	ENST00000380181		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-3UTR	ENST00000380181	ENST00000380191		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-5UTR	ENST00000380181	ENST00000479928		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380181	ENST00000380132		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-intron	ENST00000380181	ENST00000380181		ChiTaRS3.1			AA636126	GDI2	chr10	5807895	-	GDI2	chr10	5807835	+
intron-3CDS	ENST00000295901	ENST00000300850		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000295901	ENST00000394979		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000300850		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000492933	ENST00000394979		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000300850		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000394431	ENST00000394979		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000300850		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-3CDS	ENST00000482510	ENST00000394979		ChiTaRS3.1			CD626166	PSMD6	chr3	64009108	+	ZNF646	chr16	31088783	+
intron-intron	ENST00000339438	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000409078		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000541859		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000541377		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000455322		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000397587		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000263710		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000545861		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000430234		ChiTaRS3.1			AW995806	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000383314	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000383314	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000592764	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000262173	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000591922	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000543302	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000535051	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000548446		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000420353		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000415113		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000456903		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000548118		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000591397		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000328463		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000589866	ENST00000546661		ChiTaRS3.1			BF842806	RNMT	chr18	13749825	+	ATF7	chr12	53916847	+
intron-intron	ENST00000293872	ENST00000293872		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000293872	ENST00000337351		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000293872	ENST00000397783		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000293872	ENST00000397780		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000293872	ENST00000494366		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000337351	ENST00000293872		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000337351	ENST00000337351		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000337351	ENST00000397783		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000337351	ENST00000397780		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000337351	ENST00000494366		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397783	ENST00000293872		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397783	ENST00000337351		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397783	ENST00000397783		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397783	ENST00000397780		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397783	ENST00000494366		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397780	ENST00000293872		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397780	ENST00000337351		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397780	ENST00000397783		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397780	ENST00000397780		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000397780	ENST00000494366		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000494366	ENST00000293872		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000494366	ENST00000337351		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000494366	ENST00000397783		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000494366	ENST00000397780		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000494366	ENST00000494366		ChiTaRS3.1			BF435056	LUC7L	chr16	309774	-	LUC7L	chr16	309865	+
intron-intron	ENST00000448892	ENST00000448892		ChiTaRS3.1			AW772744	LINC00884	chr3	194215088	+	LINC00884	chr3	194215025	-
intron-intron	ENST00000448892	ENST00000437597		ChiTaRS3.1			AW772744	LINC00884	chr3	194215088	+	LINC00884	chr3	194215025	-
intron-intron	ENST00000437597	ENST00000448892		ChiTaRS3.1			AW772744	LINC00884	chr3	194215088	+	LINC00884	chr3	194215025	-
intron-intron	ENST00000437597	ENST00000437597		ChiTaRS3.1			AW772744	LINC00884	chr3	194215088	+	LINC00884	chr3	194215025	-
intron-intron	ENST00000307142	ENST00000307142		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000307142	ENST00000448416		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000307142	ENST00000429713		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000307142	ENST00000434046		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000307142		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000448416		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000448416	ENST00000429713		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000448416	ENST00000434046		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000307142		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000448416		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000429713	ENST00000429713		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000429713	ENST00000434046		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000307142		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000448416		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3UTR	ENST00000434046	ENST00000429713		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-intron	ENST00000434046	ENST00000434046		ChiTaRS3.1			AK021484	SYNPO2	chr4	119968737	+	SYNPO2	chr4	119954055	+
intron-3CDS	ENST00000289004	ENST00000289004		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-3CDS	ENST00000289004	ENST00000543163		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-intron	ENST00000289004	ENST00000543869		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-3CDS	ENST00000543163	ENST00000289004		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-3CDS	ENST00000543163	ENST00000543163		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-intron	ENST00000543163	ENST00000543869		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-3CDS	ENST00000543869	ENST00000289004		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-3CDS	ENST00000543869	ENST00000543163		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-intron	ENST00000543869	ENST00000543869		ChiTaRS3.1			BP348274	HPD	chr12	122277581	-	HPD	chr12	122294294	-
intron-intron	ENST00000371586	ENST00000409573		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000371586	ENST00000272570		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000371586	ENST00000476902		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000284376	ENST00000409573		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000284376	ENST00000272570		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000284376	ENST00000476902		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000460261	ENST00000409573		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000460261	ENST00000272570		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000460261	ENST00000476902		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000438831	ENST00000409573		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000438831	ENST00000272570		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000438831	ENST00000476902		ChiTaRS3.1			AW204034	CC2D1B	chr1	52816466	+	ZC3H8	chr2	112996777	+
intron-intron	ENST00000543760	ENST00000388890		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000543760	ENST00000323510		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000543760	ENST00000483173		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000543760	ENST00000467963		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000543760	ENST00000435709		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000543760	ENST00000494422		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000388890		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000323510		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000483173		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000467963		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000435709		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000366672	ENST00000494422		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000388890		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000323510		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000483173		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000467963		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000435709		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000541865	ENST00000494422		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000388890		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000323510		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000483173		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000467963		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000435709		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000485438	ENST00000494422		ChiTaRS3.1			BG985354	GALNT2	chr1	230258423	+	BRD9	chr5	882404	-
intron-intron	ENST00000426496	ENST00000545908		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000426496	ENST00000216605		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000426496	ENST00000556284		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000392078	ENST00000545908		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000392078	ENST00000216605		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000392078	ENST00000556284		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000476522	ENST00000545908		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000476522	ENST00000216605		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
intron-intron	ENST00000476522	ENST00000556284		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000367742	ENST00000545908		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000367742	ENST00000216605		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000367742	ENST00000556284		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000338920	ENST00000545908		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000338920	ENST00000216605		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
3UTR-intron	ENST00000338920	ENST00000556284		ChiTaRS3.1			BG992574	PRRC2C	chr1	171562378	+	MTHFD1	chr14	64915129	+
5UTR-intron	ENST00000398160	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398160	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398160	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398160	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398160	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398169	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398169	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398169	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398169	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398169	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000358932	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000358932	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000358932	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000358932	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000358932	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000437553	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000437553	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000437553	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000437553	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000437553	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000353689	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000353689	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000353689	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000353689	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000353689	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398163	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398163	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398163	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398163	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5UTR-intron	ENST00000398163	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5CDS-intron	ENST00000557114	ENST00000562955		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5CDS-intron	ENST00000557114	ENST00000372442		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5CDS-intron	ENST00000557114	ENST00000310739		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5CDS-intron	ENST00000557114	ENST00000372450		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
5CDS-intron	ENST00000557114	ENST00000471177		ChiTaRS3.1			BQ049764	CCNB1IP1	chr14	20793698	-	SZT2	chr1	43892712	+
intron-5UTR	ENST00000222002	ENST00000367698		ChiTaRS3.1			AF075354	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-intron	ENST00000222002	ENST00000494024		ChiTaRS3.1			AF075354	SULT2A1	chr19	48374086	-	SERPINC1	chr1	173886473	-
intron-3UTR	ENST00000348405	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000348405	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000348405	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000348405	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000348405	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000348405	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000348405	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000513858	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000513858	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000513858	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000513858	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000513858	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000513858	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000513858	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000395310	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000395310	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000395310	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000395310	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000395310	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000395310	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000395310	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000443462	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000443462	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000443462	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000443462	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000443462	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000443462	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000443462	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000509142	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000509142	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000509142	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000509142	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000509142	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000509142	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000509142	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000326950	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000326950	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000326950	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000326950	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000326950	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000326950	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000326950	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000432794	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000432794	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000432794	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000432794	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000432794	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000432794	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000432794	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000311785	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000311785	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000311785	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000311785	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000311785	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000311785	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000311785	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000448323	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000448323	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000448323	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000448323	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000448323	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000448323	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000448323	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505472	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000505472	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000505472	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505472	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505472	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505472	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505472	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000500777	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000500777	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000500777	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000500777	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000500777	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000500777	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000500777	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508502	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000508502	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000508502	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508502	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508502	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508502	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508502	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000355196	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000355196	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000355196	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000355196	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000355196	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000355196	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000355196	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000264405	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000264405	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000264405	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000264405	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000264405	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000264405	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000264405	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505984	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000505984	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000505984	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505984	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505984	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505984	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000505984	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508479	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000508479	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000508479	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508479	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508479	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508479	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000508479	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000436790	ENST00000370283		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000436790	ENST00000547204		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-intron	ENST00000436790	ENST00000519604		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000436790	ENST00000519273		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000436790	ENST00000370275		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000436790	ENST00000353546		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3UTR	ENST00000436790	ENST00000518794		ChiTaRS3.1			BP418474	SEC31A	chr4	83741680	+	ARFGAP1	chr20	61919448	+
intron-3CDS	ENST00000528697	ENST00000396651		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000528697	ENST00000372209		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3UTR	ENST00000528697	ENST00000485390		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000530763	ENST00000396651		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000530763	ENST00000372209		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3UTR	ENST00000530763	ENST00000485390		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000534577	ENST00000396651		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000534577	ENST00000372209		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3UTR	ENST00000534577	ENST00000485390		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000278198	ENST00000396651		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000278198	ENST00000372209		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3UTR	ENST00000278198	ENST00000485390		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000527150	ENST00000396651		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3CDS	ENST00000527150	ENST00000372209		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-3UTR	ENST00000527150	ENST00000485390		ChiTaRS3.1			BF920614	LRRC4C	chr11	41081143	+	RPS8	chr1	45243748	-
intron-intron	ENST00000321265	ENST00000548946		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-3UTR	ENST00000321265	ENST00000318066		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-3UTR	ENST00000321265	ENST00000550657		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-intron	ENST00000321265	ENST00000549833		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-intron	ENST00000321265	ENST00000552442		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-intron	ENST00000484772	ENST00000548946		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-3UTR	ENST00000484772	ENST00000318066		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-3UTR	ENST00000484772	ENST00000550657		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-intron	ENST00000484772	ENST00000549833		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
intron-intron	ENST00000484772	ENST00000552442		ChiTaRS3.1			AW748644	NUDC	chr1	27181496	+	UBE2N	chr12	93802478	+
3UTR-5UTR	ENST00000394155	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394155	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394155	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370690	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370690	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000535737	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000535737	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000543669	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000543669	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000394153	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000394153	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000345434	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000345434	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000539015	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000539015	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-intron	ENST00000370683	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
3UTR-5UTR	ENST00000370683	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000370676	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000370676	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000520468		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000297564		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000520271		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000517682		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000524245		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000477080	ENST00000522940		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000518171		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-5UTR	ENST00000477080	ENST00000523016		ChiTaRS3.1			BF827394	FHL1	chrX	135292939	-	COX6C	chr8	100905914	-
intron-intron	ENST00000307404	ENST00000307404		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000307404	ENST00000529231		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000307404	ENST00000525016		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000529231	ENST00000307404		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000529231	ENST00000529231		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000529231	ENST00000525016		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000525016	ENST00000307404		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000525016	ENST00000529231		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000525016	ENST00000525016		ChiTaRS3.1			BF915844	BOP1	chr8	145509255	-	BOP1	chr8	145509024	+
intron-intron	ENST00000219837	ENST00000438132		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000542263		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000417362		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000251143		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000543152		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000448695		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000544275		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000538853		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000438132		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000542263		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000417362		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000251143		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000543152		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000448695		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000544275		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000538853		ChiTaRS3.1			AW594544	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
In-frame	ENST00000356239	ENST00000395715		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000356239	ENST00000220888		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000519076		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000520276		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000356239	ENST00000519674		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000358100	ENST00000395715		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000358100	ENST00000220888		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000519076		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000520276		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000358100	ENST00000519674		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000359028	ENST00000395715		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
In-frame	ENST00000359028	ENST00000220888		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000519076		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000520276		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
5CDS-intron	ENST00000359028	ENST00000519674		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000394564	ENST00000395715		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000394564	ENST00000220888		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000519076		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000520276		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000394564	ENST00000519674		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000491695	ENST00000395715		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000491695	ENST00000220888		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000519076		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000520276		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-intron	ENST00000491695	ENST00000519674		ChiTaRS3.1			AU117784	AKAP9	chr7	91670151	+	TRPS1	chr8	116616688	-
intron-3CDS	ENST00000415930	ENST00000222005		ChiTaRS3.1			BF870824	GPI	chr19	34875115	-	CDC37	chr19	10506640	+
intron-3CDS	ENST00000356487	ENST00000222005		ChiTaRS3.1			BF870824	GPI	chr19	34875115	-	CDC37	chr19	10506640	+
intron-3CDS	ENST00000586425	ENST00000222005		ChiTaRS3.1			BF870824	GPI	chr19	34875115	-	CDC37	chr19	10506640	+
intron-intron	ENST00000524630	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000524630	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000524630	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000524630	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000524630	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529919	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529919	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529919	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529919	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529919	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399039	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399039	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399039	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399039	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399039	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000360682	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000360682	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000360682	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000360682	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000360682	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361796	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361796	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361796	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361796	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361796	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361391	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361391	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361391	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361391	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361391	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530094	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530094	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530094	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530094	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530094	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000428599	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000428599	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000428599	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000428599	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000428599	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361332	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361332	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361332	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361332	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000361332	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000527467	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000527467	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000527467	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000527467	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000527467	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000415361	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000415361	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000415361	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000415361	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000415361	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532245	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532245	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532245	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532245	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532245	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532463	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532463	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532463	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532463	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532463	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528232	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528232	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528232	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528232	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528232	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529986	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529986	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529986	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529986	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529986	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000531014	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000531014	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000531014	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000531014	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000531014	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000358694	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000358694	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000358694	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000358694	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000358694	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526772	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526772	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526772	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526772	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526772	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532787	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532787	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532787	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532787	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532787	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000533667	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000533667	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000533667	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000533667	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000533667	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529873	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529873	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529873	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529873	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529873	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000525902	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000525902	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000525902	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000525902	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000525902	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529526	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529526	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529526	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529526	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000529526	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532649	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532649	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532649	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532649	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532649	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000426142	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000426142	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000426142	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000426142	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000426142	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532844	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532844	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532844	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532844	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000532844	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528621	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528621	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528621	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528621	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000528621	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399050	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399050	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399050	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399050	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000399050	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526357	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526357	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526357	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526357	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526357	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530748	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530748	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530748	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530748	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000530748	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000534579	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000534579	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000534579	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000534579	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000534579	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526938	ENST00000342435		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526938	ENST00000448205		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526938	ENST00000487389		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526938	ENST00000448787		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
intron-intron	ENST00000526938	ENST00000484560		ChiTaRS3.1			BG956564	CTNND1	chr11	57531364	-	PLSCR1	chr3	146256954	-
5UTR-3CDS	ENST00000347703	ENST00000347703		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000347703	ENST00000392567		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000347703	ENST00000306721		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000347703	ENST00000410101		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-intron	ENST00000347703	ENST00000410019		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000392567	ENST00000347703		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000392567	ENST00000392567		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000392567	ENST00000306721		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000392567	ENST00000410101		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-intron	ENST00000392567	ENST00000410019		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000306721	ENST00000347703		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000306721	ENST00000392567		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000306721	ENST00000306721		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000306721	ENST00000410101		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-intron	ENST00000306721	ENST00000410019		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410101	ENST00000347703		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410101	ENST00000392567		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410101	ENST00000306721		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410101	ENST00000410101		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-intron	ENST00000410101	ENST00000410019		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410019	ENST00000347703		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410019	ENST00000392567		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410019	ENST00000306721		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-3CDS	ENST00000410019	ENST00000410101		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
5UTR-intron	ENST00000410019	ENST00000410019		ChiTaRS3.1			BF795374	CDCA7	chr2	174219672	-	CDCA7	chr2	174223440	+
intron-intron	ENST00000402696	ENST00000384994		ChiTaRS3.1			BF948784	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000264998	ENST00000384994		ChiTaRS3.1			BF948784	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000475382	ENST00000384994		ChiTaRS3.1			BF948784	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000376425	ENST00000376425		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376425	ENST00000376444		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376425	ENST00000376441		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376425	ENST00000473581		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376425	ENST00000376423		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376444	ENST00000376425		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376444	ENST00000376444		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376444	ENST00000376441		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376444	ENST00000473581		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376444	ENST00000376423		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376441	ENST00000376425		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376441	ENST00000376444		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376441	ENST00000376441		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376441	ENST00000473581		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376441	ENST00000376423		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000473581	ENST00000376425		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000473581	ENST00000376444		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000473581	ENST00000376441		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000473581	ENST00000473581		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000473581	ENST00000376423		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376423	ENST00000376425		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376423	ENST00000376444		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376423	ENST00000376441		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376423	ENST00000473581		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-intron	ENST00000376423	ENST00000376423		ChiTaRS3.1			BF882674	GRIPAP1	chrX	48850235	-	GRIPAP1	chrX	48854473	-
intron-3CDS	ENST00000324771	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000324771	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000324771	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000418800	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000418800	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000418800	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000454612	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000454612	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000454612	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376569	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376569	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000376569	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000446312	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000446312	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000446312	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376575	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376575	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000376575	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376570	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376570	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000376570	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376568	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376568	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000376568	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000452441	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000452441	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000452441	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000508312	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000508312	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000508312	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376567	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000376567	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000376567	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000513240	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000513240	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000513240	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000508472	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000508472	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000508472	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000361741	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000361741	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000361741	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000434428	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000434428	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000434428	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000483193	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000483193	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000483193	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000383377	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000383377	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000383377	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400414	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400414	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000400414	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000259875	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000259875	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000259875	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000552721	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000552721	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000552721	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000553015	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000553015	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000553015	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000468225	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000468225	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000468225	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400411	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400411	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000400411	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400410	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000400410	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000400410	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000412329	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000412329	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000412329	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000449518	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000449518	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000449518	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000427053	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000427053	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000427053	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548962	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548962	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000548962	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548133	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548133	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000548133	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000462241	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000462241	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000462241	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000415092	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000415092	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000415092	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000453510	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000453510	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000453510	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000550666	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000550666	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000550666	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000488414	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000488414	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000488414	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000422628	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000422628	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000422628	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400492	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400492	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000400492	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400491	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400491	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000400491	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400489	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400489	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000400489	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
Frame-shit	ENST00000549026	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
Frame-shit	ENST00000549026	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000549026	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000550395	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000550395	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000550395	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
3UTR-3CDS	ENST00000490712	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
3UTR-3CDS	ENST00000490712	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
3UTR-intron	ENST00000490712	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400488	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400488	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000400488	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400486	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
In-frame	ENST00000400486	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5CDS-intron	ENST00000400486	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5UTR-3CDS	ENST00000552434	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5UTR-3CDS	ENST00000552434	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
5UTR-intron	ENST00000552434	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000430933	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000430933	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000430933	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000429699	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000429699	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000429699	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000421229	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000421229	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000421229	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000550384	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000550384	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000550384	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000552068	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000552068	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000552068	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000487780	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000487780	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000487780	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000454774	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000454774	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000454774	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000419412	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000419412	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000419412	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548693	ENST00000292478		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-3CDS	ENST00000548693	ENST00000555673		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000548693	ENST00000485746		ChiTaRS3.1			BF769784	DDR1	chr6	2152811	+	PTCD1	chr7	99022679	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AF177235	AFF1	chr4	88007918	+	KMT2A	chr11	118353544	+
intron-intron	ENST00000446906	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000446906	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000446906	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000446906	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000446906	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377072	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377072	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377072	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377072	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377072	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000307729	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000307729	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000307729	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000307729	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000307729	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377059	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377059	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377059	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377059	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000377059	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000495130	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000495130	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000495130	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000495130	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000495130	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
5CDS-intron	ENST00000377100	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
5CDS-intron	ENST00000377100	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
5CDS-intron	ENST00000377100	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
5CDS-intron	ENST00000377100	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
5CDS-intron	ENST00000377100	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
3UTR-intron	ENST00000377091	ENST00000415676		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
3UTR-intron	ENST00000377091	ENST00000288197		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
3UTR-intron	ENST00000377091	ENST00000474759		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
3UTR-intron	ENST00000377091	ENST00000490478		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
3UTR-intron	ENST00000377091	ENST00000478261		ChiTaRS3.1			BU674264	MLLT10	chr10	21845858	-	CACNA2D3	chr3	54660646	+
intron-intron	ENST00000448637	ENST00000369489		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000448637	ENST00000457047		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000448637	ENST00000369487		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000312675	ENST00000369489		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000312675	ENST00000457047		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000312675	ENST00000369487		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000543006	ENST00000369489		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000543006	ENST00000457047		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000543006	ENST00000369487		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000471917	ENST00000369489		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000471917	ENST00000457047		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000471917	ENST00000369487		ChiTaRS3.1			AK026834	LPP	chr3	188527132	+	CD58	chr1	117058664	-
intron-intron	ENST00000455485	ENST00000527706		ChiTaRS3.1			BF959814	GUSBP11	chr22	24035424	-	DSCAML1	chr11	117366972	-
intron-intron	ENST00000455485	ENST00000321322		ChiTaRS3.1			BF959814	GUSBP11	chr22	24035424	-	DSCAML1	chr11	117366972	-
intron-3CDS	ENST00000368606	ENST00000393600		ChiTaRS3.1			BF882554	FAM26F	chr6	116783536	-	FAM50A	chrX	153674791	-
Frame-shit	ENST00000368605	ENST00000393600		ChiTaRS3.1			BF882554	FAM26F	chr6	116783536	-	FAM50A	chrX	153674791	-
intron-intron	ENST00000395388	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000395388	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000395388	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000395388	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000374982	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000374982	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000374982	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-3UTR	ENST00000383127	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-3UTR	ENST00000383127	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000383127	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000459705	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000459705	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000459705	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-3UTR	ENST00000434866	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-3UTR	ENST00000434866	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
3UTR-intron	ENST00000434866	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000416883	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000416883	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000416883	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000481943	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000481943	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000481943	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000411505	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000411505	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411505	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000414698	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000414698	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000414698	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000546379	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000546379	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000546379	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000493431	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000493431	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000493431	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000418111	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000418111	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000418111	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000383259	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000383259	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383259	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000551750	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000551750	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000551750	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000461633	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000461633	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000461633	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000383258	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000383258	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000383258	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000442960	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000442960	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000442960	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000549531	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000549531	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000549531	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000482781	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000482781	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000482781	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000415767	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000415767	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000415767	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000411524	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000411524	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000411524	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000553193	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000553193	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000553193	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000498597	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000498597	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000498597	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000395388		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000374982		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000427753	ENST00000383127		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000459705		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-3UTR	ENST00000427753	ENST00000434866		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000416883		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000481943		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000411505		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000414698		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000546379		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000493431		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000418111		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000383259		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000551750		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000461633		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000383258		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000442960		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000549531		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000482781		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000415767		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000411524		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000553193		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000498597		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000427753	ENST00000427753		ChiTaRS3.1			AW190214	HLA-DRA	chr6	3883137	-	HLA-DRA	chr6	3883007	+
intron-intron	ENST00000333190	ENST00000366924		ChiTaRS3.1			BI001044	ZNF804B	chr7	88507148	-	PLG	chr6	161152077	-
intron-intron	ENST00000333190	ENST00000308192		ChiTaRS3.1			BI001044	ZNF804B	chr7	88507148	-	PLG	chr6	161152077	-
intron-intron	ENST00000333190	ENST00000462918		ChiTaRS3.1			BI001044	ZNF804B	chr7	88507148	-	PLG	chr6	161152077	-
intron-5UTR	ENST00000579226	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000579226	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000579226	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000217652	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000217652	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-intron	ENST00000578611	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
5UTR-5UTR	ENST00000578611	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000585090	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000585090	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000580887	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000580887	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000579226		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000217652		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000578611		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000585090		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-intron	ENST00000536605	ENST00000580887		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-5UTR	ENST00000536605	ENST00000536605		ChiTaRS3.1			BF895634	MYL12A	chr18	3247852	-	MYL12A	chr18	3253242	+
intron-3CDS	ENST00000337755	ENST00000337755		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-3CDS	ENST00000337755	ENST00000292591		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-intron	ENST00000337755	ENST00000521305		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-3CDS	ENST00000292591	ENST00000337755		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-3CDS	ENST00000292591	ENST00000292591		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-intron	ENST00000292591	ENST00000521305		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-3CDS	ENST00000521305	ENST00000337755		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-3CDS	ENST00000521305	ENST00000292591		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
intron-intron	ENST00000521305	ENST00000521305		ChiTaRS3.1			AW793754	MGAT4B	chr5	179228410	+	MGAT4B	chr5	179225533	+
3UTR-intron	ENST00000534336	ENST00000215790		ChiTaRS3.1			BQ358844	MALAT1	chr11	65266736	+	TBC1D10A	chr22	30715185	-
3UTR-intron	ENST00000534336	ENST00000403477		ChiTaRS3.1			BQ358844	MALAT1	chr11	65266736	+	TBC1D10A	chr22	30715185	-
3UTR-intron	ENST00000534336	ENST00000403362		ChiTaRS3.1			BQ358844	MALAT1	chr11	65266736	+	TBC1D10A	chr22	30715185	-
3UTR-intron	ENST00000534336	ENST00000490449		ChiTaRS3.1			BQ358844	MALAT1	chr11	65266736	+	TBC1D10A	chr22	30715185	-
intron-intron	ENST00000361906	ENST00000354473		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000361906	ENST00000496809		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000361684	ENST00000354473		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000361684	ENST00000496809		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000504337	ENST00000354473		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000504337	ENST00000496809		ChiTaRS3.1			BF914434	TMEM184B	chr22	38622814	-	VPS72	chr1	151156718	+
intron-intron	ENST00000375650	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000375650	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000375650	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000375650	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-3UTR	ENST00000375650	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000375650	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000545241	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000545241	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000545241	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000545241	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-3UTR	ENST00000545241	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000545241	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000450744	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000450744	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000450744	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000450744	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-3UTR	ENST00000450744	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000450744	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000391548	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000391548	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000391548	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000391548	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-3UTR	ENST00000391548	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000391548	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000445736	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000445736	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000445736	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000445736	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-3UTR	ENST00000445736	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
intron-intron	ENST00000445736	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-intron	ENST00000391555	ENST00000375650		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-intron	ENST00000391555	ENST00000545241		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-intron	ENST00000391555	ENST00000450744		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-intron	ENST00000391555	ENST00000391548		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-3UTR	ENST00000391555	ENST00000445736		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
5CDS-intron	ENST00000391555	ENST00000391555		ChiTaRS3.1			BF798994	HSPA1B	chr6	3091170	-	HSPA1B	chr6	3083323	+
3UTR-intron	ENST00000460265	ENST00000417172		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000361388		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000422748		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000361675		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000361901		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000393118		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000495522		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000424922		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000543443		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000460265	ENST00000466704		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000417172		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000361388		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000422748		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000361675		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000361901		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000393118		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000495522		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000424922		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000543443		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
3UTR-intron	ENST00000261366	ENST00000466704		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000417172		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000361388		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000422748		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000361675		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000361901		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000393118		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000495522		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000424922		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000543443		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-intron	ENST00000395354	ENST00000466704		ChiTaRS3.1			AI983834	LMNB1	chr5	126172603	-	CALD1	chr7	134468348	-
intron-3CDS	ENST00000397063	ENST00000454682		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000397063	ENST00000550952		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000356769		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000552540		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000393891		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000548563		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000546392		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397063	ENST00000551793		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000397062	ENST00000454682		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000397062	ENST00000550952		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000356769		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000552540		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000393891		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000548563		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000546392		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000397062	ENST00000551793		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000446151	ENST00000454682		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000446151	ENST00000550952		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000356769		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000552540		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000393891		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000548563		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000546392		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000446151	ENST00000551793		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000464747	ENST00000454682		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000464747	ENST00000550952		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000356769		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000552540		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000393891		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000548563		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000546392		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000464747	ENST00000551793		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000423513	ENST00000454682		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-3CDS	ENST00000423513	ENST00000550952		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000356769		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000552540		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000393891		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000548563		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000546392		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000423513	ENST00000551793		ChiTaRS3.1			AJ711284	NFE2L2	chr2	178095949	+	NACA	chr12	57114058	+
intron-intron	ENST00000287497	ENST00000308724		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-intron	ENST00000287497	ENST00000397120		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-intron	ENST00000287497	ENST00000556277		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-intron	ENST00000544665	ENST00000308724		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-intron	ENST00000544665	ENST00000397120		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-intron	ENST00000544665	ENST00000556277		ChiTaRS3.1			BF898054	ITGAM	chr16	31283086	+	AP1G2	chr14	24029712	-
intron-3CDS	ENST00000393810	ENST00000393810		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000495706		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000393812		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000537814		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000393810	ENST00000538577		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000495706	ENST00000393810		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000495706		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000393812		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000537814		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000495706	ENST00000538577		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000393812	ENST00000393810		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000495706		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000393812		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000537814		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000393812	ENST00000538577		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000537814	ENST00000393810		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000495706		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000393812		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000537814		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000537814	ENST00000538577		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000538577	ENST00000393810		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000495706		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000393812		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000537814		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000538577	ENST00000538577		ChiTaRS3.1			BG706544	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000370495	ENST00000333229		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000370495	ENST00000342449		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000370495	ENST00000380800		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000370495	ENST00000341322		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000370495	ENST00000470108		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000496035	ENST00000333229		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000496035	ENST00000342449		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000496035	ENST00000380800		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000496035	ENST00000341322		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000496035	ENST00000470108		ChiTaRS3.1			BG984254	SLC25A28	chr10	101370974	-	BRWD1	chr21	40678843	-
intron-intron	ENST00000383329	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383329	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383329	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383329	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383329	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000376228	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000376228	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000376228	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000376228	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000376228	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000423509	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000423509	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000423509	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000423509	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000423509	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000430940	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000430940	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000430940	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000430940	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000430940	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000422726	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422726	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422726	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422726	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422726	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000424832	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000424832	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000424832	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000424832	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000424832	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000458192	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458192	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458192	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458192	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458192	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000422921	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422921	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422921	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422921	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000422921	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000456487	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000456487	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000456487	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000456487	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000456487	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000420206	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000420206	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000420206	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000420206	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000420206	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000495725	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495725	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495725	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495725	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495725	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000419135	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419135	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419135	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419135	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419135	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000433153	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000433153	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000433153	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000433153	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000433153	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000429840	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000429840	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000429840	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000429840	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000429840	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000457903	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000457903	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000457903	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000457903	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000457903	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000479546	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000479546	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000479546	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000479546	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000479546	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000400395	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400395	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400395	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400395	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400395	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000383323	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383323	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383323	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383323	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383323	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000434884	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000434884	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000434884	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000434884	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000434884	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000400394	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400394	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400394	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400394	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400394	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000494871	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000494871	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000494871	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000494871	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000494871	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000453809	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000453809	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000453809	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000453809	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000453809	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000414249	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000414249	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000414249	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000414249	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000414249	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000419590	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419590	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419590	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419590	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000419590	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000438171	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000438171	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000438171	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000438171	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000438171	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000552865	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000552865	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000552865	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000552865	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000552865	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000495898	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495898	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495898	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495898	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000495898	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000383483	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383483	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383483	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383483	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383483	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000383487	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383487	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383487	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383487	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000383487	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000458668	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458668	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458668	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458668	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000458668	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000400341	ENST00000537532		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400341	ENST00000539644		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400341	ENST00000392404		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400341	ENST00000538932		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-3UTR	ENST00000400341	ENST00000337815		ChiTaRS3.1			BP388374	HLA-C	chr6	2618687	+	ZNF664	chr12	124499711	+
intron-intron	ENST00000375742	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375742	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375755	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375750	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000534153	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375703	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000375740	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000431848	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000482280	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000395853	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000430216	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000486924	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000416549	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000456839	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000478326	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000458144	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000419269	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000414412	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549746	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000427735	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000457742	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000497157	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000435700	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436559	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000439816	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000460275	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000549604	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441395	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000441401	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000578225	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000473342	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448617	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436192	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000436004	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
3UTR-intron	ENST00000490125	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-intron	ENST00000457917	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000480915	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000443040	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376059		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000376049		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000414149		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000419376		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000425748		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000416422		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000413349		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000415830		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383474		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000488491		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000383473		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000440907		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000549432		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
intron-intron	ENST00000448169	ENST00000424944		ChiTaRS3.1			BM842904	MSH5	chr6	3004591	+	AIF1	chr6	2914927	+
5CDS-3UTR	ENST00000306726	ENST00000368865		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000538238		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368859		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000368858		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
5CDS-intron	ENST00000306726	ENST00000481952		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000564970	ENST00000368865		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000538238		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368859		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000368858		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-intron	ENST00000564970	ENST00000481952		ChiTaRS3.1			BG459834	PTPN9	chr15	75816548	-	BUB3	chr10	124924563	+
intron-3UTR	ENST00000417257	ENST00000360319		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000417257	ENST00000422373		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000417257	ENST00000369850		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000417257	ENST00000369856		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000417257	ENST00000344736		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000417257	ENST00000498491		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000402883	ENST00000360319		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000402883	ENST00000422373		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000402883	ENST00000369850		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000402883	ENST00000369856		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000402883	ENST00000344736		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000402883	ENST00000498491		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000484674	ENST00000360319		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000484674	ENST00000422373		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000484674	ENST00000369850		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000484674	ENST00000369856		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000484674	ENST00000344736		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-intron	ENST00000484674	ENST00000498491		ChiTaRS3.1			AW580394	FRMD5	chr15	44289949	-	FLNA	chrX	153577026	-
intron-3UTR	ENST00000336735	ENST00000336735		ChiTaRS3.1			AL045444	SEL1L	chr14	81940577	+	SEL1L	chr14	81940488	-
intron-intron	ENST00000336735	ENST00000555824		ChiTaRS3.1			AL045444	SEL1L	chr14	81940577	+	SEL1L	chr14	81940488	-
intron-3UTR	ENST00000555824	ENST00000336735		ChiTaRS3.1			AL045444	SEL1L	chr14	81940577	+	SEL1L	chr14	81940488	-
intron-intron	ENST00000555824	ENST00000555824		ChiTaRS3.1			AL045444	SEL1L	chr14	81940577	+	SEL1L	chr14	81940488	-
intron-3UTR	ENST00000359979	ENST00000263253		ChiTaRS3.1			BQ226164	CCSER2	chr10	86273831	+	EP300	chr22	41575897	+
5CDS-3UTR	ENST00000372088	ENST00000263253		ChiTaRS3.1			BQ226164	CCSER2	chr10	86273831	+	EP300	chr22	41575897	+
3UTR-3UTR	ENST00000224756	ENST00000263253		ChiTaRS3.1			BQ226164	CCSER2	chr10	86273831	+	EP300	chr22	41575897	+
3UTR-3UTR	ENST00000494144	ENST00000263253		ChiTaRS3.1			BQ226164	CCSER2	chr10	86273831	+	EP300	chr22	41575897	+
intron-3UTR	ENST00000543283	ENST00000263253		ChiTaRS3.1			BQ226164	CCSER2	chr10	86273831	+	EP300	chr22	41575897	+
intron-3CDS	ENST00000282908	ENST00000427836		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000282908	ENST00000389247		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000282908	ENST00000457206		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000512636	ENST00000427836		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000512636	ENST00000389247		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000512636	ENST00000457206		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000510398	ENST00000427836		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000510398	ENST00000389247		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000510398	ENST00000457206		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000508728	ENST00000427836		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000508728	ENST00000389247		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
intron-3CDS	ENST00000508728	ENST00000457206		ChiTaRS3.1			BF928354	STK32B	chr4	5410227	+	PLEKHM3	chr2	208866332	-
5CDS-intron	ENST00000417172	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000417172	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000417172	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000417172	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000417172	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361388	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361388	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361388	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361388	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361388	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000422748	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000422748	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000422748	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000422748	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000422748	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361675	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361675	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361675	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361675	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361675	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361901	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361901	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361901	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361901	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000361901	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000393118	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000393118	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000393118	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000393118	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000393118	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000495522	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000495522	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000495522	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000495522	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000495522	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000424922	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000424922	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000424922	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000424922	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000424922	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000543443	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000543443	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000543443	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000543443	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
5CDS-intron	ENST00000543443	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
3UTR-intron	ENST00000466704	ENST00000333229		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
3UTR-intron	ENST00000466704	ENST00000342449		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
3UTR-intron	ENST00000466704	ENST00000380800		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
3UTR-intron	ENST00000466704	ENST00000341322		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
3UTR-intron	ENST00000466704	ENST00000470108		ChiTaRS3.1			BG980424	CALD1	chr7	134635143	-	BRWD1	chr21	40664869	+
intron-3CDS	ENST00000217961	ENST00000601048		ChiTaRS3.1			BF956604	STS	chrX	7176190	-	SEPW1	chr19	48284572	-
intron-3CDS	ENST00000217961	ENST00000509570		ChiTaRS3.1			BF956604	STS	chrX	7176190	-	SEPW1	chr19	48284572	-
intron-3CDS	ENST00000217961	ENST00000593892		ChiTaRS3.1			BF956604	STS	chrX	7176190	-	SEPW1	chr19	48284572	-
intron-3UTR	ENST00000217961	ENST00000601419		ChiTaRS3.1			BF956604	STS	chrX	7176190	-	SEPW1	chr19	48284572	-
intron-3UTR	ENST00000217961	ENST00000595615		ChiTaRS3.1			BF956604	STS	chrX	7176190	-	SEPW1	chr19	48284572	-
intron-intron	ENST00000262367	ENST00000262367		ChiTaRS3.1			AK094404	CREBBP	chr16	3918046	-	CREBBP	chr16	3916861	+
intron-intron	ENST00000262367	ENST00000382070		ChiTaRS3.1			AK094404	CREBBP	chr16	3918046	-	CREBBP	chr16	3916861	+
intron-intron	ENST00000382070	ENST00000262367		ChiTaRS3.1			AK094404	CREBBP	chr16	3918046	-	CREBBP	chr16	3916861	+
intron-intron	ENST00000382070	ENST00000382070		ChiTaRS3.1			AK094404	CREBBP	chr16	3918046	-	CREBBP	chr16	3916861	+
intron-intron	ENST00000375643	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375643	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375629	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000443024	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000447699	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000375627	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375643		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375629		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000443024		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000447699		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000375627		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-intron	ENST00000474340	ENST00000474340		ChiTaRS3.1			AW451294	IARS	chr9	95017687	+	IARS	chr9	95016986	+
intron-3CDS	ENST00000374436	ENST00000374436		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374436	ENST00000374443		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374436	ENST00000374450		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-intron	ENST00000374436	ENST00000462894		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374443	ENST00000374436		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374443	ENST00000374443		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374443	ENST00000374450		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-intron	ENST00000374443	ENST00000462894		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374450	ENST00000374436		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374450	ENST00000374443		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000374450	ENST00000374450		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-intron	ENST00000374450	ENST00000462894		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000462894	ENST00000374436		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000462894	ENST00000374443		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-3CDS	ENST00000462894	ENST00000374450		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
intron-intron	ENST00000462894	ENST00000462894		ChiTaRS3.1			BG957584	EIF6	chr20	33866857	+	EIF6	chr20	33867506	-
Frame-shit	ENST00000358849	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000358849	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-3UTR	ENST00000358849	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
Frame-shit	ENST00000542328	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000542328	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-3UTR	ENST00000542328	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
Frame-shit	ENST00000297504	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000297504	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-3UTR	ENST00000297504	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-3CDS	ENST00000356058	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-intron	ENST00000356058	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
3UTR-3UTR	ENST00000356058	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
Frame-shit	ENST00000498578	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-intron	ENST00000498578	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
5CDS-3UTR	ENST00000498578	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3CDS	ENST00000477719	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477719	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3UTR	ENST00000477719	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3CDS	ENST00000477092	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000477092	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3UTR	ENST00000477092	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3CDS	ENST00000493338	ENST00000358849		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000542328		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000297504		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000356058		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000498578		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000477719		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000493338	ENST00000477092		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-3UTR	ENST00000493338	ENST00000493338		ChiTaRS3.1			BP369304	ABCB8	chr7	150742435	+	ABCB8	chr7	150730827	+
intron-intron	ENST00000344147	ENST00000344147		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000344147	ENST00000479629		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000344147	ENST00000373714		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000344147	ENST00000546109		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000344147	ENST00000422613		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000479629	ENST00000344147		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000479629	ENST00000479629		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000479629	ENST00000373714		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000479629	ENST00000546109		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000479629	ENST00000422613		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000373714	ENST00000344147		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000373714	ENST00000479629		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000373714	ENST00000373714		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000373714	ENST00000546109		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000373714	ENST00000422613		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000546109	ENST00000344147		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000546109	ENST00000479629		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000546109	ENST00000373714		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000546109	ENST00000546109		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000546109	ENST00000422613		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000422613	ENST00000344147		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000422613	ENST00000479629		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000422613	ENST00000373714		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000422613	ENST00000546109		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-intron	ENST00000422613	ENST00000422613		ChiTaRS3.1			BF806504	ZCCHC17	chr1	31835384	-	ZCCHC17	chr1	31835321	+
intron-3CDS	ENST00000557325	ENST00000371217		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000557325	ENST00000265993		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000557325	ENST00000430368		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-intron	ENST00000557325	ENST00000371209		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000334696	ENST00000371217		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000334696	ENST00000265993		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000334696	ENST00000430368		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-intron	ENST00000334696	ENST00000371209		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000556242	ENST00000371217		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000556242	ENST00000265993		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000556242	ENST00000430368		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-intron	ENST00000556242	ENST00000371209		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000554664	ENST00000371217		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000554664	ENST00000265993		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3CDS	ENST00000554664	ENST00000430368		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-intron	ENST00000554664	ENST00000371209		ChiTaRS3.1			AW578884	ENTPD5	chr14	74433567	-	TCTN3	chr10	97423888	+
intron-3UTR	ENST00000604900	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000604900	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000604900	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000604900	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000604900	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000412716	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000412716	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000412716	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000412716	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-intron	ENST00000412716	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000449723	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000449723	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000449723	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-3UTR	ENST00000449723	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
3UTR-intron	ENST00000449723	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549555	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549555	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549555	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549555	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000549555	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000439799	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000439799	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000439799	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000439799	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000439799	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000425012	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000425012	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000425012	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000425012	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000425012	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549732	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549732	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549732	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000549732	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000549732	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551534	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551534	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551534	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551534	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000551534	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551313	ENST00000601048		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551313	ENST00000509570		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551313	ENST00000593892		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-3UTR	ENST00000551313	ENST00000601419		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000551313	ENST00000595615		ChiTaRS3.1			BQ306734	DAZAP2	chr12	51637104	+	SEPW1	chr19	48287748	-
intron-intron	ENST00000484532	ENST00000561177		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000484532	ENST00000348070		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000484532	ENST00000358417		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000484532	ENST00000344273		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000484532	ENST00000398181		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000484532	ENST00000331826		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000561177		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000348070		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000358417		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000344273		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000398181		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000234875	ENST00000331826		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000561177		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000348070		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000358417		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000344273		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000398181		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000497965	ENST00000331826		ChiTaRS3.1			BF846664	RPL22	chr1	6246042	+	PCSK6	chr15	101871293	-
intron-intron	ENST00000530878	ENST00000530878		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000530878	ENST00000361897		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000530878	ENST00000493151		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000530878	ENST00000454693		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000361897	ENST00000530878		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000361897	ENST00000361897		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000361897	ENST00000493151		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000361897	ENST00000454693		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000493151	ENST00000530878		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000493151	ENST00000361897		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000493151	ENST00000493151		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000493151	ENST00000454693		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000454693	ENST00000530878		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000454693	ENST00000361897		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000454693	ENST00000493151		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-intron	ENST00000454693	ENST00000454693		ChiTaRS3.1			BU676434	NOS1AP	chr1	162194682	-	NOS1AP	chr1	162195477	-
intron-3CDS	ENST00000373232	ENST00000379802		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000373232	ENST00000418664		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000608321	ENST00000379802		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000608321	ENST00000418664		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000495346	ENST00000379802		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3CDS	ENST00000495346	ENST00000418664		ChiTaRS3.1			AW604384	PPA1	chr10	71974337	+	DSP	chr6	7578788	-
intron-3UTR	ENST00000382151	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000382151	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000382151	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000382151	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000382151	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000382151	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000266095	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000266095	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000266095	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000266095	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000266095	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000266095	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000397500	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000397500	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000397500	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000397500	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000397500	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000397500	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000336566	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000336566	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000336566	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000336566	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000336566	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000336566	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000439502	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000439502	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000439502	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000439502	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000439502	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000439502	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000478893	ENST00000382151		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000478893	ENST00000266095		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000478893	ENST00000397500		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000478893	ENST00000336566		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-3UTR	ENST00000478893	ENST00000439502		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000478893	ENST00000478893		ChiTaRS3.1			BQ375244	PISD	chr22	32015263	-	PISD	chr22	32015445	+
intron-intron	ENST00000510514	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000510514	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000510514	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000510514	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000510514	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000510514	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000555236	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000434623	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000374525	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000259318	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000510514		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000555236		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000434623		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000374525		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000259318		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000482335	ENST00000482335		ChiTaRS3.1			BF996024	AKAP2	chr9	112865915	+	AKAP2	chr9	112865788	-
intron-intron	ENST00000384994	ENST00000320201		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000384994	ENST00000392428		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000384994	ENST00000280562		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000384994	ENST00000542749		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000384994	ENST00000546049		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000384994	ENST00000451868		ChiTaRS3.1			BF843824	NEAT1	chr11	65194286	+	PITPNM2	chr12	123483325	+
intron-intron	ENST00000609205	ENST00000261381		ChiTaRS3.1			BG009784	MSN	chrX	64895784	-	XYLT1	chr16	17520171	-
intron-intron	ENST00000609205	ENST00000568226		ChiTaRS3.1			BG009784	MSN	chrX	64895784	-	XYLT1	chr16	17520171	-
intron-intron	ENST00000360270	ENST00000261381		ChiTaRS3.1			BG009784	MSN	chrX	64895784	-	XYLT1	chr16	17520171	-
intron-intron	ENST00000360270	ENST00000568226		ChiTaRS3.1			BG009784	MSN	chrX	64895784	-	XYLT1	chr16	17520171	-
5CDS-intron	ENST00000265304	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000265304	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000265304	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000498107	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000498107	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000498107	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
3UTR-intron	ENST00000469123	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
3UTR-intron	ENST00000469123	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
3UTR-intron	ENST00000469123	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000465582	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000465582	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000465582	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000484178	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000484178	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000484178	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000481508	ENST00000372391		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000481508	ENST00000372388		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
5CDS-intron	ENST00000481508	ENST00000459739		ChiTaRS3.1			BQ306484	SSBP1	chr7	141443461	-	DLG5	chr10	79669609	-
intron-intron	ENST00000542802	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000542802	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000542802	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000542802	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000542802	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000542802	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000312010	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000449938	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000588467	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000589424	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000542802		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000312010		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000449938		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000588467		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000589424		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
intron-intron	ENST00000590546	ENST00000590546		ChiTaRS3.1			BF845884	USP36	chr17	76821312	-	USP36	chr17	76822359	-
5CDS-intron	ENST00000265109	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000265109	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000265109	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000265109	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000512629	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000512629	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000512629	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000512629	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000428746	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000428746	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000428746	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000428746	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000503673	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000503673	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000503673	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000503673	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000515799	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000515799	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000515799	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000515799	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000506376	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000506376	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000506376	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000506376	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
intron-intron	ENST00000507276	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
intron-intron	ENST00000507276	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
intron-intron	ENST00000507276	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
intron-intron	ENST00000507276	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000397449	ENST00000523719		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000397449	ENST00000276609		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000397449	ENST00000309536		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
5CDS-intron	ENST00000397449	ENST00000520249		ChiTaRS3.1			BF987124	RAI14	chr5	34824268	-	SLC26A7	chr8	92295186	+
intron-3UTR	ENST00000353317	ENST00000288607		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000353317	ENST00000404674		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-intron	ENST00000353317	ENST00000252329		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000315962	ENST00000288607		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000315962	ENST00000404674		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-intron	ENST00000315962	ENST00000252329		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000276573	ENST00000288607		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000276573	ENST00000404674		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-intron	ENST00000276573	ENST00000252329		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000350034	ENST00000288607		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3UTR	ENST00000350034	ENST00000404674		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-intron	ENST00000350034	ENST00000252329		ChiTaRS3.1			AK056594	TRIM55	chr8	67084649	+	PSMG3	chr7	1607218	-
intron-3CDS	ENST00000370189	ENST00000409718		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000370189	ENST00000358677		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000370189	ENST00000409988		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000409385		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000451764		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000360760		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000409140		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000409755		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000370189	ENST00000409151		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-intron	ENST00000370189	ENST00000460095		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000529992	ENST00000409718		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000529992	ENST00000358677		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000529992	ENST00000409988		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000409385		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000451764		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000360760		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000409140		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000409755		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000529992	ENST00000409151		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-intron	ENST00000529992	ENST00000460095		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000306121	ENST00000409718		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000306121	ENST00000358677		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000306121	ENST00000409988		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000409385		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000451764		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000360760		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000409140		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000409755		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000306121	ENST00000409151		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-intron	ENST00000306121	ENST00000460095		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000473868	ENST00000409718		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000473868	ENST00000358677		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-3CDS	ENST00000473868	ENST00000409988		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000409385		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000451764		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000360760		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000409140		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000409755		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-5UTR	ENST00000473868	ENST00000409151		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
intron-intron	ENST00000473868	ENST00000460095		ChiTaRS3.1			BU615374	SNX7	chr1	99200682	-	SPATS2L	chr2	201281113	+
3UTR-3UTR	ENST00000497517	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
3UTR-intron	ENST00000497517	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-3UTR	ENST00000539820	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000539820	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-3UTR	ENST00000382269	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-intron	ENST00000382269	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000349624	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000349624	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000345913	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000345913	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000346956	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000346956	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000337415	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000337415	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000329066	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000329066	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000382201	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382201	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-3UTR	ENST00000382198	ENST00000497517		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000539820		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000382269		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000349624		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000345913		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000346956		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000337415		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000329066		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000382201		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
5CDS-intron	ENST00000382198	ENST00000382198		ChiTaRS3.1			BG990924	TPO	chr2	1497812	+	TPO	chr2	1488467	-
intron-3CDS	ENST00000526148	ENST00000526148		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000526148	ENST00000525681		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000526148	ENST00000339995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000526148	ENST00000396525		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-intron	ENST00000526148	ENST00000525995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525681	ENST00000526148		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525681	ENST00000525681		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525681	ENST00000339995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525681	ENST00000396525		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-intron	ENST00000525681	ENST00000525995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000339995	ENST00000526148		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000339995	ENST00000525681		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000339995	ENST00000339995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000339995	ENST00000396525		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-intron	ENST00000339995	ENST00000525995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000396525	ENST00000526148		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000396525	ENST00000525681		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000396525	ENST00000339995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000396525	ENST00000396525		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-intron	ENST00000396525	ENST00000525995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525995	ENST00000526148		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525995	ENST00000525681		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525995	ENST00000339995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-3CDS	ENST00000525995	ENST00000396525		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
intron-intron	ENST00000525995	ENST00000525995		ChiTaRS3.1			BG822944	EIF4G2	chr11	10825598	+	EIF4G2	chr11	10825535	-
In-frame	ENST00000262043	ENST00000262043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000509330		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000393387		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000262043	ENST00000420043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000509330	ENST00000262043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000509330		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000393387		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000509330	ENST00000420043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
In-frame	ENST00000393387	ENST00000262043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000509330		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000393387		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
5CDS-intron	ENST00000393387	ENST00000420043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3CDS	ENST00000420043	ENST00000262043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000509330		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000393387		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-intron	ENST00000420043	ENST00000420043		ChiTaRS3.1			AW207554	PHF3	chr6	64416087	-	PHF3	chr6	64416645	+
intron-3UTR	ENST00000334270	ENST00000581396		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000379504		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000318094		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000395739		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000535933		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000540946		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000542206		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000478943		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000334270	ENST00000577517		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-3UTR	ENST00000461970	ENST00000581396		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000379504		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000318094		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000395739		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000535933		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000540946		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000542206		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000478943		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000461970	ENST00000577517		ChiTaRS3.1			BF813734	TTF1	chr9	135262205	-	TOM1L2	chr17	17747180	-
intron-intron	ENST00000466387	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000496558	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000361291	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000402739	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000540488	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000541047	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000343114	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000496251	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
intron-intron	ENST00000409266	ENST00000362507		ChiTaRS3.1			BM666334	CTNNA2	chr2	79664036	-	RNU5F-1	chr1	220238518	+
3UTR-3UTR	ENST00000423930	ENST00000369317		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
3UTR-3UTR	ENST00000423930	ENST00000475171		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
3UTR-3UTR	ENST00000300179	ENST00000369317		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
3UTR-3UTR	ENST00000300179	ENST00000475171		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
3UTR-3UTR	ENST00000454988	ENST00000369317		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
3UTR-3UTR	ENST00000454988	ENST00000475171		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
intron-3UTR	ENST00000496985	ENST00000369317		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
intron-3UTR	ENST00000496985	ENST00000475171		ChiTaRS3.1			BF934064	NYAP1	chr7	100091851	-	TXNIP	chr1	145442318	+
intron-intron	ENST00000320876	ENST00000504595		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000320876	ENST00000510662		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000320876	ENST00000329673		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000261598	ENST00000504595		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000261598	ENST00000510662		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000261598	ENST00000329673		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000609587	ENST00000504595		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000609587	ENST00000510662		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-intron	ENST00000609587	ENST00000329673		ChiTaRS3.1			AJ711804	SMCHD1	chr18	2661878	+	FBXL7	chr5	15733479	+
intron-3CDS	ENST00000261674	ENST00000358632		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000268053		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000261674	ENST00000419019		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000541301		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000261674	ENST00000467407		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000358632		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000268053		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000541286	ENST00000419019		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000541301		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000541286	ENST00000467407		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000358632		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000268053		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-3CDS	ENST00000539506	ENST00000419019		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000541301		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000539506	ENST00000467407		ChiTaRS3.1			BG011364	SFSWAP	chr12	132216049	-	CYP11A1	chr15	74630957	+
intron-intron	ENST00000390548	ENST00000458477		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000228307		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000424649		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000397506		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000536957		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000267257		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
intron-intron	ENST00000390548	ENST00000538144		ChiTaRS3.1			BF903314	IGHG1	chr22	22647160	+	PXN	chr12	120657768	+
In-frame	ENST00000262429	ENST00000262429		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
In-frame	ENST00000262429	ENST00000416219		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
5CDS-3UTR	ENST00000262429	ENST00000420010		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
In-frame	ENST00000416219	ENST00000262429		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
In-frame	ENST00000416219	ENST00000416219		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
5CDS-3UTR	ENST00000416219	ENST00000420010		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
3UTR-3CDS	ENST00000420010	ENST00000262429		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
3UTR-3CDS	ENST00000420010	ENST00000416219		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
3UTR-3UTR	ENST00000420010	ENST00000420010		ChiTaRS3.1			AI863694	ATP2C2	chr16	84472865	-	ATP2C2	chr16	84486814	-
intron-3CDS	ENST00000303657	ENST00000303657		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000303657	ENST00000359161		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000303657	ENST00000592546		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-intron	ENST00000303657	ENST00000587700		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000359161	ENST00000303657		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000359161	ENST00000359161		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000359161	ENST00000592546		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-intron	ENST00000359161	ENST00000587700		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000592546	ENST00000303657		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000592546	ENST00000359161		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000592546	ENST00000592546		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-intron	ENST00000592546	ENST00000587700		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000587700	ENST00000303657		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000587700	ENST00000359161		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3CDS	ENST00000587700	ENST00000592546		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-intron	ENST00000587700	ENST00000587700		ChiTaRS3.1			BF902834	RFX2	chr19	6039842	+	RFX2	chr19	6013055	+
intron-3UTR	ENST00000276282	ENST00000263239		ChiTaRS3.1			BQ349714	MFHAS1	chr8	8644020	+	DDX18	chr2	118589189	+
intron-intron	ENST00000276282	ENST00000474694		ChiTaRS3.1			BQ349714	MFHAS1	chr8	8644020	+	DDX18	chr2	118589189	+
intron-3UTR	ENST00000520091	ENST00000263239		ChiTaRS3.1			BQ349714	MFHAS1	chr8	8644020	+	DDX18	chr2	118589189	+
intron-intron	ENST00000520091	ENST00000474694		ChiTaRS3.1			BQ349714	MFHAS1	chr8	8644020	+	DDX18	chr2	118589189	+
intron-intron	ENST00000293493	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000293493	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000339069	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000339069	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000314537	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000314537	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000352855	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000352855	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000577353	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000577353	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000398285	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000398285	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000548791	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000548791	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000551817	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000551817	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000550606	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000550606	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000552724	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000552724	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000547258	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000547258	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000551221	ENST00000259750		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-intron	ENST00000551221	ENST00000304139		ChiTaRS3.1			BF957724	CRHR1	chr17	43793436	-	TTBK1	chr6	43241897	+
intron-3UTR	ENST00000222690	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000222690	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000222690	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000437072	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000437072	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000437072	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000349299	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000349299	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000349299	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000308153	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000308153	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000308153	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000350771	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000350771	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000350771	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000381124	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000381124	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000381124	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000521529	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000521529	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000521529	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-3UTR	ENST00000446531	ENST00000330342		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000446531	ENST00000544833		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000446531	ENST00000543687		ChiTaRS3.1			BF929914	H2AFV	chr7	44867614	+	ATP6V0A2	chr12	124244338	-
intron-intron	ENST00000373627	ENST00000373627		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373627	ENST00000373616		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373627	ENST00000471737		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373627	ENST00000538808		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373616	ENST00000373627		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373616	ENST00000373616		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373616	ENST00000471737		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000373616	ENST00000538808		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000471737	ENST00000373627		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000471737	ENST00000373616		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000471737	ENST00000471737		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000471737	ENST00000538808		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000538808	ENST00000373627		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000538808	ENST00000373616		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000538808	ENST00000471737		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
intron-intron	ENST00000538808	ENST00000538808		ChiTaRS3.1			BI006314	MTCH1	chr6	36947809	-	MTCH1	chr6	36947748	+
3UTR-intron	ENST00000348035	ENST00000303786		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
3UTR-intron	ENST00000348035	ENST00000394342		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
intron-intron	ENST00000356142	ENST00000303786		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
intron-intron	ENST00000356142	ENST00000394342		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
intron-intron	ENST00000488373	ENST00000303786		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
intron-intron	ENST00000488373	ENST00000394342		ChiTaRS3.1			BF924694	RAC1	chr7	6443169	-	PROKR1	chr2	68859774	-
intron-intron	ENST00000259523	ENST00000259523		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
intron-3UTR	ENST00000259523	ENST00000377970		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
intron-3UTR	ENST00000259523	ENST00000524013		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-intron	ENST00000377970	ENST00000259523		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-3UTR	ENST00000377970	ENST00000377970		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-3UTR	ENST00000377970	ENST00000524013		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-intron	ENST00000524013	ENST00000259523		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-3UTR	ENST00000524013	ENST00000377970		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-3UTR	ENST00000524013	ENST00000524013		ChiTaRS3.1			AW021464	MYC	chr8	128753406	-	MYC	chr8	128753465	+
3UTR-intron	ENST00000261247	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000261247	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000261247	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000261247	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000261247	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000557560	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000557560	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000557560	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000557560	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000557560	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000425728	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000425728	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000425728	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000425728	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000425728	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000556985	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000556985	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000556985	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000556985	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000556985	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000554271	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000554271	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000554271	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000554271	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000554271	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000356057	ENST00000358155		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000356057	ENST00000367733		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000356057	ENST00000355305		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000356057	ENST00000367731		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
3UTR-intron	ENST00000356057	ENST00000520906		ChiTaRS3.1			BF949574	JKAMP	chr14	59970834	+	DNM3	chr1	172120937	+
intron-intron	ENST00000228862	ENST00000442101		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000228862	ENST00000498824		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000228862	ENST00000239882		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000298573	ENST00000442101		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000298573	ENST00000498824		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000298573	ENST00000239882		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000545864	ENST00000442101		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000545864	ENST00000498824		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
intron-intron	ENST00000545864	ENST00000239882		ChiTaRS3.1			BF798804	DUSP16	chr12	12629031	+	ELF1	chr13	41559697	+
5CDS-intron	ENST00000301761	ENST00000432063		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000301761	ENST00000338608		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000301761	ENST00000366212		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-5UTR	ENST00000301761	ENST00000538185		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
intron-intron	ENST00000542074	ENST00000432063		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
intron-intron	ENST00000542074	ENST00000338608		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
intron-intron	ENST00000542074	ENST00000366212		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
intron-5UTR	ENST00000542074	ENST00000538185		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000537782	ENST00000432063		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000537782	ENST00000338608		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000537782	ENST00000366212		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-5UTR	ENST00000537782	ENST00000538185		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000543265	ENST00000432063		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000543265	ENST00000338608		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000543265	ENST00000366212		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-5UTR	ENST00000543265	ENST00000538185		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000534878	ENST00000432063		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000534878	ENST00000338608		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-intron	ENST00000534878	ENST00000366212		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
5CDS-5UTR	ENST00000534878	ENST00000538185		ChiTaRS3.1			BG399714	SDHAF2	chr11	61205247	+	PPP1R32	chr11	61256970	-
In-frame	ENST00000605788	ENST00000229447		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000605788	ENST00000344419		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000605788	ENST00000392256		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000605788	ENST00000392255		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000605788	ENST00000500320		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000605788	ENST00000425615		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000229447		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000344419		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000392256		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000392255		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000500320		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000405356	ENST00000425615		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000229447		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000344419		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000392256		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000392255		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000500320		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000603742	ENST00000425615		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000229447		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000344419		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000392256		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000392255		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000500320		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
In-frame	ENST00000488254	ENST00000425615		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000229447		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000344419		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000392256		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000392255		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000500320		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
3UTR-3CDS	ENST00000477977	ENST00000425615		ChiTaRS3.1			BG949184	NOLC1	chr10	103920547	-	IYD	chr6	150713589	-
intron-3UTR	ENST00000260630	ENST00000260630		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-5UTR	ENST00000260630	ENST00000494864		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-3UTR	ENST00000260630	ENST00000407341		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-3UTR	ENST00000494864	ENST00000260630		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-5UTR	ENST00000494864	ENST00000494864		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-3UTR	ENST00000494864	ENST00000407341		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-3UTR	ENST00000407341	ENST00000260630		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-5UTR	ENST00000407341	ENST00000494864		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-3UTR	ENST00000407341	ENST00000407341		ChiTaRS3.1			BU689794	CYP1B1	chr2	38297220	+	CYP1B1	chr2	38297661	-
intron-intron	ENST00000412770	ENST00000251296		ChiTaRS3.1			AW468174	PPP6R1	chr19	55741219	+	IGSF21	chr1	18644994	-
intron-intron	ENST00000412770	ENST00000473951		ChiTaRS3.1			AW468174	PPP6R1	chr19	55741219	+	IGSF21	chr1	18644994	-
intron-intron	ENST00000587283	ENST00000251296		ChiTaRS3.1			AW468174	PPP6R1	chr19	55741219	+	IGSF21	chr1	18644994	-
intron-intron	ENST00000587283	ENST00000473951		ChiTaRS3.1			AW468174	PPP6R1	chr19	55741219	+	IGSF21	chr1	18644994	-
In-frame	ENST00000319715	ENST00000319715		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000319715	ENST00000452655		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000319715	ENST00000381039		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000319715	ENST00000348022		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-3CDS	ENST00000452655	ENST00000319715		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000452655	ENST00000452655		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000452655	ENST00000381039		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000452655	ENST00000348022		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-3CDS	ENST00000381039	ENST00000319715		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000381039	ENST00000452655		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000381039	ENST00000381039		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000381039	ENST00000348022		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
In-frame	ENST00000348022	ENST00000319715		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000348022	ENST00000452655		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000348022	ENST00000381039		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
5CDS-intron	ENST00000348022	ENST00000348022		ChiTaRS3.1			BQ776164	RBBP6	chr16	24581330	-	RBBP6	chr16	24581165	+
intron-intron	ENST00000443950	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000443950	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000443950	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000443950	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000443950	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000443950	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000544000	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000357065	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000356053	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000337970	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000443950		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000544000		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000357065		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000356053		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000337970		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-intron	ENST00000498176	ENST00000498176		ChiTaRS3.1			AW375964	HNRNPF	chr10	43891686	-	HNRNPF	chr10	43891513	+
intron-3UTR	ENST00000518852	ENST00000287878		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000518852	ENST00000418337		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000518852	ENST00000433631		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000518852	ENST00000492843		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000518852	ENST00000392801		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-intron	ENST00000518852	ENST00000461529		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000240139	ENST00000287878		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000240139	ENST00000418337		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000240139	ENST00000433631		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000240139	ENST00000492843		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000240139	ENST00000392801		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-intron	ENST00000240139	ENST00000461529		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000289963	ENST00000287878		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000289963	ENST00000418337		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000289963	ENST00000433631		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000289963	ENST00000492843		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000289963	ENST00000392801		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-intron	ENST00000289963	ENST00000461529		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000397775	ENST00000287878		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000397775	ENST00000418337		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000397775	ENST00000433631		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000397775	ENST00000492843		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000397775	ENST00000392801		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-intron	ENST00000397775	ENST00000461529		ChiTaRS3.1			BG007354	PPP3CC	chr8	22384338	-	PRKAG2	chr7	151254066	-
intron-3UTR	ENST00000536363	ENST00000490724		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000536363	ENST00000392192		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000536363	ENST00000368011		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000540689	ENST00000490724		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000540689	ENST00000392192		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000540689	ENST00000368011		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601134	ENST00000490724		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601134	ENST00000392192		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601134	ENST00000368011		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601629	ENST00000490724		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601629	ENST00000392192		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000601629	ENST00000368011		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000292530	ENST00000490724		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000292530	ENST00000392192		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
intron-3UTR	ENST00000292530	ENST00000368011		ChiTaRS3.1			AK123144	ZNF333	chr19	14820628	+	KLHDC9	chr1	161069512	+
Frame-shit	ENST00000302907	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000302907	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000302907	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000302907	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391752	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391752	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391752	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391752	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000402367	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000402367	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000402367	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000402367	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000391751	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000391751	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000391751	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000391751	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391753	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391753	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
Frame-shit	ENST00000391753	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
5CDS-intron	ENST00000391753	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000441429	ENST00000325241		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000441429	ENST00000544249		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-3CDS	ENST00000441429	ENST00000446747		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000525266		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000325217		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000529819		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000532393		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000528372		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
3UTR-intron	ENST00000441429	ENST00000528130		ChiTaRS3.1			AW771764	RPS9	chr19	54711406	-	ZNF7	chr8	146067596	-
intron-intron	ENST00000296511	ENST00000468888		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000399362		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000539981		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000359576		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000307312		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000480013		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000461133		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000313350		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000487200		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000333778		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000296511	ENST00000482896		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000468888		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000399362		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000539981		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000359576		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000307312		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000480013		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000461133		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000313350		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000487200		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000333778		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000501272	ENST00000482896		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000468888		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000399362		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000539981		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000359576		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000307312		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000480013		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000461133		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000313350		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000487200		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000333778		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000515017	ENST00000482896		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000468888		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000399362		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000539981		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000359576		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000307312		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000480013		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000461133		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000313350		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000487200		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000333778		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
intron-intron	ENST00000509016	ENST00000482896		ChiTaRS3.1			BG958254	ANXA5	chr4	122595172	+	CLASP2	chr3	33753812	-
3UTR-3UTR	ENST00000361564	ENST00000602624		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
3UTR-3UTR	ENST00000361564	ENST00000375048		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
3UTR-3UTR	ENST00000361564	ENST00000415136		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
3UTR-intron	ENST00000361564	ENST00000477229		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000512478	ENST00000602624		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000512478	ENST00000375048		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000512478	ENST00000415136		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-intron	ENST00000512478	ENST00000477229		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000505745	ENST00000602624		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000505745	ENST00000375048		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000505745	ENST00000415136		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-intron	ENST00000505745	ENST00000477229		ChiTaRS3.1			AW614804	OSTC	chr4	109588663	-	DDOST	chr1	20978660	+
intron-3UTR	ENST00000397887	ENST00000397887		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000397887	ENST00000330938		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397887	ENST00000445724		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397887	ENST00000397886		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397887	ENST00000494690		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000330938	ENST00000397887		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000330938	ENST00000330938		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000330938	ENST00000445724		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000330938	ENST00000397886		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000330938	ENST00000494690		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000445724	ENST00000397887		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000445724	ENST00000330938		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000445724	ENST00000445724		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000445724	ENST00000397886		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000445724	ENST00000494690		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000397886	ENST00000397887		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000397886	ENST00000330938		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397886	ENST00000445724		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397886	ENST00000397886		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000397886	ENST00000494690		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000494690	ENST00000397887		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-3UTR	ENST00000494690	ENST00000330938		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000494690	ENST00000445724		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000494690	ENST00000397886		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000494690	ENST00000494690		ChiTaRS3.1			BU608064	PTTG1IP	chr21	46269724	+	PTTG1IP	chr21	46270147	-
intron-intron	ENST00000347401	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000347401	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000347401	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000347401	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000353578	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000353578	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000353578	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000353578	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000295550	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000295550	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000295550	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000295550	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000472056	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000472056	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000472056	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000472056	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000409809	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000409809	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000409809	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000409809	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000346358	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000346358	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000346358	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000346358	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392004	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392004	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392004	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392004	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392003	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392003	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392003	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000392003	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000473258	ENST00000518836		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000473258	ENST00000313708		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000473258	ENST00000380654		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
intron-intron	ENST00000473258	ENST00000517373		ChiTaRS3.1			AW082894	COL6A3	chr2	238232936	+	EBF1	chr5	158283716	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			AW381344	MALAT1	chr11	65272267	+	MALAT1	chr11	65272296	-
intron-intron	ENST00000368679	ENST00000361654		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000545889		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000302528		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000358808		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000537178		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000540338		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000536634		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368679	ENST00000540539		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000361654		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000545889		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000302528		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000358808		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000537178		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000540338		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000536634		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000368676	ENST00000540539		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000361654		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000545889		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000302528		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000358808		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000537178		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000540338		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000536634		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000467145	ENST00000540539		ChiTaRS3.1			BF986124	ADAM12	chr10	127957181	-	CLIP1	chr12	122821105	+
intron-intron	ENST00000437600	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000437600	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000292538	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000292538	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000393824	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000393824	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000547394	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000547394	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000360264	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000360264	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000425244	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000425244	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000292535	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000292535	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000549414	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000549414	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000556210	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000556210	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000550008	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000550008	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000546411	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000546411	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000560541	ENST00000300060		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
intron-intron	ENST00000560541	ENST00000558177		ChiTaRS3.1			BQ882584	CUX1	chr7	101461904	+	ANPEP	chr15	90348048	-
3UTR-intron	ENST00000534358	ENST00000262031		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
3UTR-intron	ENST00000534358	ENST00000552247		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
3UTR-intron	ENST00000534358	ENST00000549945		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
3UTR-intron	ENST00000534358	ENST00000550726		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
3UTR-intron	ENST00000534358	ENST00000542360		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000389506	ENST00000262031		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000389506	ENST00000552247		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000389506	ENST00000549945		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000389506	ENST00000550726		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000389506	ENST00000542360		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000354520	ENST00000262031		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000354520	ENST00000552247		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000354520	ENST00000549945		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000354520	ENST00000550726		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000354520	ENST00000542360		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000420751	ENST00000262031		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000420751	ENST00000552247		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000420751	ENST00000549945		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000420751	ENST00000550726		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
intron-intron	ENST00000420751	ENST00000542360		ChiTaRS3.1			BF810814	KMT2A	chr11	118396120	-	RBMS2	chr12	56988283	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BU678504	MALAT1	chr11	65266767	-	MALAT1	chr11	65266565	+
intron-intron	ENST00000376395	ENST00000540693		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000337343		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000379274		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000261491		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000536612		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000498255		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000376395	ENST00000538674		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000540693		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000337343		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000379274		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000261491		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000536612		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000498255		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000257468	ENST00000538674		ChiTaRS3.1			BG571504	UBQLN1	chr9	86306517	-	DGKH	chr13	42708464	+
intron-intron	ENST00000331920	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000331920	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000418258	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000418258	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000421141	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000421141	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000437951	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000437951	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000430669	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000430669	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000429896	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000429896	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000375274	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000375274	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000548379	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000548379	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000468211	ENST00000363315		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-intron	ENST00000468211	ENST00000364968		ChiTaRS3.1			BQ231164	PTCH1	chr9	98275354	+	SNHG16	chr17	74560603	+
intron-3UTR	ENST00000295470	ENST00000295470		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000295470	ENST00000349655		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000295470	ENST00000602300		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000295470	ENST00000502762		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-intron	ENST00000295470	ENST00000514511		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000349655	ENST00000295470		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000349655	ENST00000349655		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000349655	ENST00000602300		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000349655	ENST00000502762		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-intron	ENST00000349655	ENST00000514511		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000602300	ENST00000295470		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000602300	ENST00000349655		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000602300	ENST00000602300		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000602300	ENST00000502762		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-intron	ENST00000602300	ENST00000514511		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000502762	ENST00000295470		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000502762	ENST00000349655		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000502762	ENST00000602300		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000502762	ENST00000502762		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-intron	ENST00000502762	ENST00000514511		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000514511	ENST00000295470		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000514511	ENST00000349655		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000514511	ENST00000602300		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3UTR	ENST00000514511	ENST00000502762		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-intron	ENST00000514511	ENST00000514511		ChiTaRS3.1			BU607354	HNRNPDL	chr4	83345864	+	HNRNPDL	chr4	83346021	-
intron-3CDS	ENST00000373298	ENST00000293872		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000373298	ENST00000337351		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000373298	ENST00000397783		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000373298	ENST00000397780		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000373298	ENST00000494366		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3CDS	ENST00000434584	ENST00000293872		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000434584	ENST00000337351		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000434584	ENST00000397783		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000434584	ENST00000397780		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000434584	ENST00000494366		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3CDS	ENST00000469541	ENST00000293872		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000469541	ENST00000337351		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-3UTR	ENST00000469541	ENST00000397783		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000469541	ENST00000397780		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000469541	ENST00000494366		ChiTaRS3.1			BF931704	ITM2A	chrX	78618580	+	LUC7L	chr16	239234	-
intron-intron	ENST00000247087	ENST00000247087		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000247087	ENST00000374011		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000247087	ENST00000480033		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000374011	ENST00000247087		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000374011	ENST00000374011		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000374011	ENST00000480033		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000480033	ENST00000247087		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000480033	ENST00000374011		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
intron-intron	ENST00000480033	ENST00000480033		ChiTaRS3.1			AK026294	AHDC1	chr1	27866254	-	AHDC1	chr1	27870191	-
3UTR-intron	ENST00000305943	ENST00000334005		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000378473		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000278655		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000414679		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000492632		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000378501		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000305943	ENST00000378493		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000334005		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000378473		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000278655		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000414679		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000492632		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000378501		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
3UTR-intron	ENST00000482739	ENST00000378493		ChiTaRS3.1			AW519364	RNF187	chr1	228682668	+	PLCB4	chr20	9223560	+
intron-intron	ENST00000373555	ENST00000559488		ChiTaRS3.1			BQ368804	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000571680		ChiTaRS3.1			BQ368804	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000435993		ChiTaRS3.1			BQ368804	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000373555	ENST00000560629		ChiTaRS3.1			BQ368804	GOLGA1	chr9	127642395	+	ITGB3	chr17	45335348	-
intron-intron	ENST00000550735	ENST00000550735		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000551404		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000547305		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000550735	ENST00000546394		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000550735		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000551404		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000547305		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000551404	ENST00000546394		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000550735		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000551404		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000547305		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000547305	ENST00000546394		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000550735		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000551404		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000547305		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000546394	ENST00000546394		ChiTaRS3.1			BP398174	MAPKAPK5	chr12	112326570	+	MAPKAPK5	chr12	112325382	+
intron-intron	ENST00000228515	ENST00000228515		ChiTaRS3.1			BG119524	CSRNP2	chr12	51463780	-	CSRNP2	chr12	51464642	-
intron-intron	ENST00000228515	ENST00000550461		ChiTaRS3.1			BG119524	CSRNP2	chr12	51463780	-	CSRNP2	chr12	51464642	-
intron-intron	ENST00000550461	ENST00000228515		ChiTaRS3.1			BG119524	CSRNP2	chr12	51463780	-	CSRNP2	chr12	51464642	-
intron-intron	ENST00000550461	ENST00000550461		ChiTaRS3.1			BG119524	CSRNP2	chr12	51463780	-	CSRNP2	chr12	51464642	-
intron-3CDS	ENST00000322313	ENST00000260379		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000322313	ENST00000357790		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000322313	ENST00000560274		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000393006	ENST00000260379		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000393006	ENST00000357790		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000393006	ENST00000560274		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000409658	ENST00000260379		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000409658	ENST00000357790		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
intron-3CDS	ENST00000409658	ENST00000560274		ChiTaRS3.1			BI006044	WDR33	chr2	128471524	-	RPLP1	chr15	69745311	-
3UTR-3CDS	ENST00000405995	ENST00000290271		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
3UTR-3CDS	ENST00000405995	ENST00000524323		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
3UTR-3CDS	ENST00000357304	ENST00000290271		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
3UTR-3CDS	ENST00000357304	ENST00000524323		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
intron-3CDS	ENST00000458550	ENST00000290271		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
intron-3CDS	ENST00000458550	ENST00000524323		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
intron-3CDS	ENST00000372249	ENST00000290271		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
intron-3CDS	ENST00000372249	ENST00000524323		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
3UTR-3CDS	ENST00000465931	ENST00000290271		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
3UTR-3CDS	ENST00000465931	ENST00000524323		ChiTaRS3.1			BF854554	PRRC2B	chr9	134374250	+	STC1	chr8	23702296	+
intron-3CDS	ENST00000254636	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000254636	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000254636	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000254636	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000254636	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000254636	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000449247	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000449247	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000449247	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000449247	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000449247	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000449247	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000410111	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000410111	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000410111	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000410111	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000410111	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000410111	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000442664	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000442664	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000442664	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000442664	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000442664	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000442664	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000409051	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000409051	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000409051	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000409051	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000409051	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000409051	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000490238	ENST00000254636		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000490238	ENST00000449247		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000490238	ENST00000410111		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000490238	ENST00000442664		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-3CDS	ENST00000490238	ENST00000409051		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000490238	ENST00000490238		ChiTaRS3.1			BU675384	IMMT	chr2	86371301	+	IMMT	chr2	86371519	-
intron-intron	ENST00000368887	ENST00000307378		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000368887	ENST00000537524		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000368887	ENST00000473830		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000368887	ENST00000452078		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000368887	ENST00000458504		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000368887	ENST00000390670		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000307378		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000537524		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000473830		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000452078		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000458504		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000405485	ENST00000390670		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000307378		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000537524		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000473830		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000452078		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000458504		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000497219	ENST00000390670		ChiTaRS3.1			BQ786844	PSTK	chr10	124745496	+	SLCO1A2	chr12	21531733	-
intron-intron	ENST00000225964	ENST00000327946		ChiTaRS3.1			AI804474	COL1A1	chr17	48262801	+	GRID1	chr10	88115764	+
intron-intron	ENST00000225964	ENST00000536331		ChiTaRS3.1			AI804474	COL1A1	chr17	48262801	+	GRID1	chr10	88115764	+
intron-intron	ENST00000225964	ENST00000552278		ChiTaRS3.1			AI804474	COL1A1	chr17	48262801	+	GRID1	chr10	88115764	+
intron-intron	ENST00000581865	ENST00000581865		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-3UTR	ENST00000581865	ENST00000312655		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-intron	ENST00000581865	ENST00000585166		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
3UTR-intron	ENST00000312655	ENST00000581865		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
3UTR-3UTR	ENST00000312655	ENST00000312655		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
3UTR-intron	ENST00000312655	ENST00000585166		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-intron	ENST00000585166	ENST00000581865		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-3UTR	ENST00000585166	ENST00000312655		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-intron	ENST00000585166	ENST00000585166		ChiTaRS3.1			AW172264	YPEL2	chr17	57474964	-	YPEL2	chr17	57477296	-
intron-3CDS	ENST00000389048	ENST00000524631		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000389048	ENST00000533099		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000389048	ENST00000423855		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000431873	ENST00000524631		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000431873	ENST00000533099		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000431873	ENST00000423855		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000498037	ENST00000524631		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000498037	ENST00000533099		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-3CDS	ENST00000498037	ENST00000423855		ChiTaRS3.1			BG991454	ALK	chr2	29814590	-	RNPC3	chr1	104094397	-
intron-intron	ENST00000561924	ENST00000561924		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-3UTR	ENST00000561924	ENST00000290858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-3UTR	ENST00000561924	ENST00000412916		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-intron	ENST00000561924	ENST00000568858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-intron	ENST00000290858	ENST00000561924		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-3UTR	ENST00000290858	ENST00000290858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-3UTR	ENST00000290858	ENST00000412916		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-intron	ENST00000290858	ENST00000568858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-intron	ENST00000412916	ENST00000561924		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-3UTR	ENST00000412916	ENST00000290858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-3UTR	ENST00000412916	ENST00000412916		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
3UTR-intron	ENST00000412916	ENST00000568858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-intron	ENST00000568858	ENST00000561924		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-3UTR	ENST00000568858	ENST00000290858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-3UTR	ENST00000568858	ENST00000412916		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-intron	ENST00000568858	ENST00000568858		ChiTaRS3.1			BG177224	CBFB	chr16	67134716	-	CBFB	chr16	67134770	+
intron-3CDS	ENST00000341846	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000341846	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000341846	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000341846	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000341846	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000341846	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3CDS	ENST00000524816	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000524816	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000524816	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000524816	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000524816	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000524816	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3CDS	ENST00000541857	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000541857	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000541857	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000541857	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000541857	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000541857	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3CDS	ENST00000525887	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000525887	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000525887	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000525887	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000525887	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000525887	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3CDS	ENST00000528870	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000528870	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000528870	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000528870	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000528870	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000528870	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3CDS	ENST00000529044	ENST00000341846		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000529044	ENST00000524816		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000529044	ENST00000541857		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000529044	ENST00000525887		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000529044	ENST00000528870		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-intron	ENST00000529044	ENST00000529044		ChiTaRS3.1			BG996534	TRIM29	chr11	119988972	-	TRIM29	chr11	119998126	-
intron-3UTR	ENST00000357749	ENST00000256497		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-intron	ENST00000357749	ENST00000445686		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-3UTR	ENST00000467744	ENST00000256497		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-intron	ENST00000467744	ENST00000445686		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-3UTR	ENST00000537751	ENST00000256497		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-intron	ENST00000537751	ENST00000445686		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-3UTR	ENST00000358786	ENST00000256497		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-intron	ENST00000358786	ENST00000445686		ChiTaRS3.1			AW372554	CHM	chrX	85128204	-	EDEM1	chr3	5260040	-
intron-intron	ENST00000342239	ENST00000317276		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000342239	ENST00000581082		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000342239	ENST00000578089		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000342239	ENST00000354903		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000324109	ENST00000317276		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000324109	ENST00000581082		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000324109	ENST00000578089		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000324109	ENST00000354903		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000543621	ENST00000317276		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000543621	ENST00000581082		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000543621	ENST00000578089		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000543621	ENST00000354903		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000540316	ENST00000317276		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000540316	ENST00000581082		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000540316	ENST00000578089		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000540316	ENST00000354903		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000472036	ENST00000317276		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000472036	ENST00000581082		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000472036	ENST00000578089		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000472036	ENST00000354903		ChiTaRS3.1			BF849664	DNMBP	chr10	101635993	+	PER1	chr17	8050160	+
intron-intron	ENST00000533902	ENST00000533902		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000280258		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000441050		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000533902	ENST00000531521		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000533902		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000280258		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000441050		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
5CDS-intron	ENST00000280258	ENST00000531521		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000533902		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000280258		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000441050		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000441050	ENST00000531521		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000533902		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000280258		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000441050		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
intron-intron	ENST00000531521	ENST00000531521		ChiTaRS3.1			AW603344	PRSS23	chr11	86518853	-	PRSS23	chr11	86518702	+
3UTR-intron	ENST00000167106	ENST00000338368		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
3UTR-intron	ENST00000167106	ENST00000314191		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
3UTR-intron	ENST00000167106	ENST00000523565		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554237	ENST00000338368		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554237	ENST00000314191		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554237	ENST00000523565		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000556038	ENST00000338368		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000556038	ENST00000314191		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000556038	ENST00000523565		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554743	ENST00000338368		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554743	ENST00000314191		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-intron	ENST00000554743	ENST00000523565		ChiTaRS3.1			BG961504	VASH1	chr14	77246725	-	PRKDC	chr8	48844131	+
intron-3UTR	ENST00000370056	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000370056	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000370056	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000370056	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000370056	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000370056	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-3UTR	ENST00000527011	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000527011	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000527011	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000527011	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000527011	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000527011	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-3UTR	ENST00000544443	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000544443	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000544443	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000544443	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000544443	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000544443	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-3UTR	ENST00000415432	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000415432	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000415432	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000415432	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000415432	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000415432	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-3UTR	ENST00000343258	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000343258	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000343258	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000343258	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000343258	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000343258	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-3UTR	ENST00000371846	ENST00000370056		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000371846	ENST00000527011		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000371846	ENST00000544443		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000371846	ENST00000415432		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000371846	ENST00000343258		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
intron-intron	ENST00000371846	ENST00000371846		ChiTaRS3.1			BU674434	VAV3	chr1	108113863	+	VAV3	chr1	108113998	-
Frame-shit	ENST00000358465	ENST00000358465		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
Frame-shit	ENST00000358465	ENST00000369543		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5CDS-intron	ENST00000358465	ENST00000450349		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5CDS-intron	ENST00000358465	ENST00000476908		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
Frame-shit	ENST00000369543	ENST00000358465		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
Frame-shit	ENST00000369543	ENST00000369543		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5CDS-intron	ENST00000369543	ENST00000450349		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5CDS-intron	ENST00000369543	ENST00000476908		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5UTR-3CDS	ENST00000450349	ENST00000358465		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5UTR-3CDS	ENST00000450349	ENST00000369543		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5UTR-intron	ENST00000450349	ENST00000450349		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
5UTR-intron	ENST00000450349	ENST00000476908		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
intron-3CDS	ENST00000476908	ENST00000358465		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
intron-3CDS	ENST00000476908	ENST00000369543		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
intron-intron	ENST00000476908	ENST00000450349		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
intron-intron	ENST00000476908	ENST00000476908		ChiTaRS3.1			BF950854	TRIM33	chr1	115005726	-	TRIM33	chr1	115007013	-
intron-5UTR	ENST00000331925	ENST00000601521		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000331925	ENST00000598098		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000331925	ENST00000598495		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000331925	ENST00000196551		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000331925	ENST00000596046		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000573283	ENST00000601521		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000573283	ENST00000598098		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000573283	ENST00000598495		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000573283	ENST00000196551		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000573283	ENST00000596046		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575842	ENST00000601521		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575842	ENST00000598098		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575842	ENST00000598495		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575842	ENST00000196551		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575842	ENST00000596046		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575087	ENST00000601521		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575087	ENST00000598098		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575087	ENST00000598495		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575087	ENST00000196551		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-5UTR	ENST00000575087	ENST00000596046		ChiTaRS3.1			BQ227834	ACTG1	chr17	79477287	+	RPS5	chr19	58898661	+
intron-3CDS	ENST00000257290	ENST00000369183		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-5UTR	ENST00000257290	ENST00000469758		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-5UTR	ENST00000257290	ENST00000369172		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-3CDS	ENST00000508170	ENST00000369183		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-5UTR	ENST00000508170	ENST00000469758		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-5UTR	ENST00000508170	ENST00000369172		ChiTaRS3.1			BF819034	PDGFRA	chr4	54343008	+	FAM204A	chr10	120095919	-
intron-5UTR	ENST00000377026	ENST00000490126		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000377026	ENST00000225410		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000377026	ENST00000588253		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000377026	ENST00000592616		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000377026	ENST00000590858		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000398425	ENST00000490126		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000398425	ENST00000225410		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000398425	ENST00000588253		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000398425	ENST00000592616		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000398425	ENST00000590858		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000432543	ENST00000490126		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000432543	ENST00000225410		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000432543	ENST00000588253		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000432543	ENST00000592616		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000432543	ENST00000590858		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000472855	ENST00000490126		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000472855	ENST00000225410		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-5UTR	ENST00000472855	ENST00000588253		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000472855	ENST00000592616		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
intron-intron	ENST00000472855	ENST00000590858		ChiTaRS3.1			AK096494	NAPB	chr20	23360096	-	ZNHIT3	chr17	34842522	+
5CDS-5UTR	ENST00000331817	ENST00000331817		ChiTaRS3.1			AU122394	KRT7	chr12	52631351	+	KRT7	chr12	52627030	+
5CDS-intron	ENST00000331817	ENST00000552322		ChiTaRS3.1			AU122394	KRT7	chr12	52631351	+	KRT7	chr12	52627030	+
intron-5UTR	ENST00000552322	ENST00000331817		ChiTaRS3.1			AU122394	KRT7	chr12	52631351	+	KRT7	chr12	52627030	+
intron-intron	ENST00000552322	ENST00000552322		ChiTaRS3.1			AU122394	KRT7	chr12	52631351	+	KRT7	chr12	52627030	+
intron-3CDS	ENST00000371711	ENST00000331272		ChiTaRS3.1			BF851864	B4GALT5	chr20	48277135	+	FBXW4	chr10	103432775	+
intron-intron	ENST00000371711	ENST00000470093		ChiTaRS3.1			BF851864	B4GALT5	chr20	48277135	+	FBXW4	chr10	103432775	+
intron-3CDS	ENST00000408742	ENST00000415149		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
intron-3CDS	ENST00000408742	ENST00000402543		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
intron-3CDS	ENST00000408742	ENST00000325805		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
intron-intron	ENST00000408742	ENST00000416476		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
intron-intron	ENST00000408742	ENST00000406780		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
intron-intron	ENST00000408742	ENST00000473542		ChiTaRS3.1			BQ355244	MIR548N	chr2	179476513	+	BBX	chr3	107492198	-
In-frame	ENST00000369981	ENST00000369981		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369981	ENST00000369985		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369981	ENST00000369977		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369981	ENST00000369975		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
5CDS-intron	ENST00000369981	ENST00000462633		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369985	ENST00000369981		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369985	ENST00000369985		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369985	ENST00000369977		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369985	ENST00000369975		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
5CDS-intron	ENST00000369985	ENST00000462633		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369977	ENST00000369981		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369977	ENST00000369985		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369977	ENST00000369977		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369977	ENST00000369975		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
5CDS-intron	ENST00000369977	ENST00000462633		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369975	ENST00000369981		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369975	ENST00000369985		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369975	ENST00000369977		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
In-frame	ENST00000369975	ENST00000369975		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
5CDS-intron	ENST00000369975	ENST00000462633		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
3UTR-3CDS	ENST00000462633	ENST00000369981		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
3UTR-3CDS	ENST00000462633	ENST00000369985		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
3UTR-3CDS	ENST00000462633	ENST00000369977		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
3UTR-3CDS	ENST00000462633	ENST00000369975		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
3UTR-intron	ENST00000462633	ENST00000462633		ChiTaRS3.1			AW151244	MYO6	chr6	76589812	-	MYO6	chr6	76570792	+
5UTR-3UTR	ENST00000538010	ENST00000538010		ChiTaRS3.1			AW204714	BCL7A	chr12	122459861	-	BCL7A	chr12	122497256	-
5UTR-3UTR	ENST00000538010	ENST00000261822		ChiTaRS3.1			AW204714	BCL7A	chr12	122459861	-	BCL7A	chr12	122497256	-
5UTR-3UTR	ENST00000261822	ENST00000538010		ChiTaRS3.1			AW204714	BCL7A	chr12	122459861	-	BCL7A	chr12	122497256	-
5UTR-3UTR	ENST00000261822	ENST00000261822		ChiTaRS3.1			AW204714	BCL7A	chr12	122459861	-	BCL7A	chr12	122497256	-
5CDS-intron	ENST00000326639	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000326639	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000264584	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000441387	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5UTR-intron	ENST00000354456	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-intron	ENST00000506199	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000512292	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000394288	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000432347	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000348697		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000402984		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000262722		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000327858		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000442170		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000340923		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
5CDS-intron	ENST00000427266	ENST00000476366		ChiTaRS3.1			BF873944	LARP1B	chr4	128999075	-	FBLN1	chr22	45929052	-
intron-3CDS	ENST00000559488	ENST00000393020		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000559488	ENST00000529221		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000559488	ENST00000314756		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000559488	ENST00000483239		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-intron	ENST00000559488	ENST00000478125		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000571680	ENST00000393020		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000571680	ENST00000529221		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000571680	ENST00000314756		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-3CDS	ENST00000571680	ENST00000483239		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-intron	ENST00000571680	ENST00000478125		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000435993	ENST00000393020		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000435993	ENST00000529221		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000435993	ENST00000314756		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000435993	ENST00000483239		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-intron	ENST00000435993	ENST00000478125		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000560629	ENST00000393020		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000560629	ENST00000529221		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000560629	ENST00000314756		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-3CDS	ENST00000560629	ENST00000483239		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
3UTR-intron	ENST00000560629	ENST00000478125		ChiTaRS3.1			BF800064	ITGB3	chr17	45421576	-	TTC12	chr11	113233207	-
intron-intron	ENST00000396659	ENST00000314571		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000383797		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000454502		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000402228		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000444864		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000284995		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000415684		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000396659	ENST00000475595		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000314571		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000383797		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000454502		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000402228		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000444864		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000284995		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000415684		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000558336	ENST00000475595		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000314571		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000383797		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000454502		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000402228		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000444864		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000284995		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000415684		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000458245	ENST00000475595		ChiTaRS3.1			BF946024	GATM	chr15	45654108	+	TSEN2	chr3	12560544	+
intron-intron	ENST00000557636	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000557636	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000557636	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000557636	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000557636	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000557636	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000557636	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000286650	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000286650	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-3UTR	ENST00000298832	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
3UTR-intron	ENST00000298832	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000556893	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556893	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000554510	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000554510	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000556977	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000556977	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000557636		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000286650		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-3UTR	ENST00000555422	ENST00000298832		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000556893		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000554510		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000556977		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
intron-intron	ENST00000555422	ENST00000555422		ChiTaRS3.1			BG257644	TTLL5	chr14	76420926	-	TTLL5	chr14	76420951	+
5CDS-intron	ENST00000456435	ENST00000400105		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000456435	ENST00000317931		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000456435	ENST00000284898		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000456435	ENST00000400104		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000456435	ENST00000535782		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000456435	ENST00000578677		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000400105		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000317931		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000284898		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000400104		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000535782		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000318967	ENST00000578677		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000400105		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000317931		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000284898		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000400104		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000535782		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000435409	ENST00000578677		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000400105		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000317931		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000284898		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000400104		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000535782		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
5CDS-intron	ENST00000512605	ENST00000578677		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000400105		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000317931		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000284898		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000400104		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000535782		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
3UTR-intron	ENST00000476843	ENST00000578677		ChiTaRS3.1			BF913064	INTS3	chr1	153745445	-	L3MBTL4	chr18	6375505	-
intron-3CDS	ENST00000328194	ENST00000328194		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000328194	ENST00000530044		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000328194	ENST00000527700		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-intron	ENST00000328194	ENST00000526523		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000530044	ENST00000328194		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000530044	ENST00000530044		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000530044	ENST00000527700		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-intron	ENST00000530044	ENST00000526523		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000527700	ENST00000328194		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000527700	ENST00000530044		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000527700	ENST00000527700		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-intron	ENST00000527700	ENST00000526523		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000526523	ENST00000328194		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000526523	ENST00000530044		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-3CDS	ENST00000526523	ENST00000527700		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-intron	ENST00000526523	ENST00000526523		ChiTaRS3.1			BG258354	DENND5A	chr11	9167314	+	DENND5A	chr11	9166655	-
intron-intron	ENST00000368416	ENST00000439128		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368416	ENST00000511633		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368416	ENST00000510533		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368416	ENST00000507142		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368416	ENST00000512193		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368417	ENST00000439128		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368417	ENST00000511633		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368417	ENST00000510533		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368417	ENST00000507142		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000368417	ENST00000512193		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000546092	ENST00000439128		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000546092	ENST00000511633		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000546092	ENST00000510533		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000546092	ENST00000507142		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000546092	ENST00000512193		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000545433	ENST00000439128		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000545433	ENST00000511633		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000545433	ENST00000510533		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000545433	ENST00000507142		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000545433	ENST00000512193		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000476571	ENST00000439128		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000476571	ENST00000511633		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000476571	ENST00000510533		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000476571	ENST00000507142		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-intron	ENST00000476571	ENST00000512193		ChiTaRS3.1			AW813844	NKAIN2	chr6	124812714	+	NEK1	chr4	170407936	+
intron-3CDS	ENST00000317216	ENST00000314675		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000317216	ENST00000374223		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000317216	ENST00000357089		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000317216	ENST00000374221		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000317216	ENST00000374217		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000317216	ENST00000374222		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000317216	ENST00000535108		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000317216	ENST00000436301		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000314675		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000374223		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000357089		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000374221		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000374217		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000522910	ENST00000374222		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000522910	ENST00000535108		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000522910	ENST00000436301		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000314675		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000374223		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000357089		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000374221		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000374217		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000519492	ENST00000374222		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000519492	ENST00000535108		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000519492	ENST00000436301		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000314675		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000374223		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000357089		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000374221		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000374217		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-3CDS	ENST00000524088	ENST00000374222		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000524088	ENST00000535108		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000524088	ENST00000436301		ChiTaRS3.1			BI003584	EGR3	chr8	22548839	-	UBXN11	chr1	26609183	-
intron-intron	ENST00000221543	ENST00000340208		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000424173		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000504921		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000514028		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000437473		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000510942		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000506554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000508569		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000514015		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000539796		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000221543	ENST00000503554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000340208		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000424173		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000504921		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000514028		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000437473		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000510942		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000506554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000508569		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000514015		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000539796		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000535102	ENST00000503554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000340208		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000424173		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000504921		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000514028		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000437473		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000510942		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000506554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000508569		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000514015		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000539796		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000598789	ENST00000503554		ChiTaRS3.1			BF884734	TBC1D17	chr19	50388728	-	MEF2C	chr5	88161407	+
intron-intron	ENST00000391918	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000391918	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000391918	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-3UTR	ENST00000291295	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000291295	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000597743	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000597743	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000477244	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000477244	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000598871	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000598871	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000594523	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000594523	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-3UTR	ENST00000599839	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-intron	ENST00000599839	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000400968		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-3UTR	ENST00000596362	ENST00000432079		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000460715		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000416058		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367446		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367445		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367444		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367443		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
intron-intron	ENST00000596362	ENST00000367441		ChiTaRS3.1			BQ327094	CALM3	chr19	47113184	-	TROVE2	chr1	193057032	+
3UTR-3UTR	ENST00000356401	ENST00000356401		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
3UTR-intron	ENST00000356401	ENST00000449376		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
3UTR-intron	ENST00000356401	ENST00000490095		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-3UTR	ENST00000449376	ENST00000356401		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-intron	ENST00000449376	ENST00000449376		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-intron	ENST00000449376	ENST00000490095		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-3UTR	ENST00000490095	ENST00000356401		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-intron	ENST00000490095	ENST00000449376		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-intron	ENST00000490095	ENST00000490095		ChiTaRS3.1			AL162034	ARIH2	chr3	49022233	-	ARIH2	chr3	49022284	+
intron-3CDS	ENST00000376395	ENST00000376395		ChiTaRS3.1			BG005194	UBQLN1	chr9	86276692	-	UBQLN1	chr9	86284242	-
intron-3CDS	ENST00000376395	ENST00000257468		ChiTaRS3.1			BG005194	UBQLN1	chr9	86276692	-	UBQLN1	chr9	86284242	-
intron-3CDS	ENST00000257468	ENST00000376395		ChiTaRS3.1			BG005194	UBQLN1	chr9	86276692	-	UBQLN1	chr9	86284242	-
intron-3CDS	ENST00000257468	ENST00000257468		ChiTaRS3.1			BG005194	UBQLN1	chr9	86276692	-	UBQLN1	chr9	86284242	-
intron-intron	ENST00000396268	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396268	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000376266	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000376266	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396263	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000396263	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000451521	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000451521	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000480060	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000480060	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416163	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416163	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400351	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400351	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000425620	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000425620	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000466904	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000466904	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400352	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400352	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000414614	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000414614	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383341	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383341	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000474554	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000474554	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000419528	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000419528	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000428677	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000428677	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000433804	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000433804	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000481855	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000481855	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400412	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400412	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400406	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000400406	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383527	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000383527	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000470755	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000470755	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000447252	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000447252	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000452333	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000452333	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416392	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000416392	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000467461	ENST00000375071		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-intron	ENST00000467461	ENST00000461985		ChiTaRS3.1			BF901504	CCHCR1	chr6	2413749	+	CDA	chr1	20938233	+
intron-3UTR	ENST00000360507	ENST00000361475		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
intron-intron	ENST00000360507	ENST00000536701		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
intron-intron	ENST00000360507	ENST00000536724		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
intron-3UTR	ENST00000409789	ENST00000361475		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
intron-intron	ENST00000409789	ENST00000536701		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
intron-intron	ENST00000409789	ENST00000536724		ChiTaRS3.1			BG253144	CNPPD1	chr2	220037584	-	TGM2	chr20	36757109	-
3UTR-3CDS	ENST00000402198	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402198	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402198	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402198	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402198	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-intron	ENST00000402198	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402466	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402466	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402466	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402466	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000402466	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-intron	ENST00000402466	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000406341	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000406341	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000406341	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000406341	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000406341	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-intron	ENST00000406341	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000407969	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000407969	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000407969	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000407969	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-3CDS	ENST00000407969	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
3UTR-intron	ENST00000407969	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000302463	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000302463	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000302463	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000302463	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000302463	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-intron	ENST00000302463	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000488236	ENST00000402198		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000488236	ENST00000402466		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000488236	ENST00000406341		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000488236	ENST00000407969		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3CDS	ENST00000488236	ENST00000302463		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-intron	ENST00000488236	ENST00000488236		ChiTaRS3.1			BU619874	SETD5	chr3	9519628	+	SETD5	chr3	9517370	+
intron-3UTR	ENST00000573882	ENST00000372806		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573882	ENST00000396731		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573882	ENST00000372801		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000573882	ENST00000499879		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573882	ENST00000487587		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000344227	ENST00000372806		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000344227	ENST00000396731		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000344227	ENST00000372801		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000344227	ENST00000499879		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000344227	ENST00000487587		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000570421	ENST00000372806		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000570421	ENST00000396731		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000570421	ENST00000372801		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000570421	ENST00000499879		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000570421	ENST00000487587		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000392434	ENST00000372806		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000392434	ENST00000396731		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000392434	ENST00000372801		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000392434	ENST00000499879		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000392434	ENST00000487587		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000573754	ENST00000372806		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573754	ENST00000396731		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573754	ENST00000372801		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-3UTR	ENST00000573754	ENST00000499879		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
intron-intron	ENST00000573754	ENST00000487587		ChiTaRS3.1			AW811264	CARD14	chr17	78155566	-	STK4	chr20	43704740	-
Frame-shit	ENST00000313654	ENST00000263946		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000313654	ENST00000367324		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000313654	ENST00000352845		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
5CDS-intron	ENST00000313654	ENST00000475988		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000399516	ENST00000263946		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000399516	ENST00000367324		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000399516	ENST00000352845		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
5CDS-intron	ENST00000399516	ENST00000475988		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000269217	ENST00000263946		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000269217	ENST00000367324		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000269217	ENST00000352845		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
5CDS-intron	ENST00000269217	ENST00000475988		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000587184	ENST00000263946		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000587184	ENST00000367324		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000587184	ENST00000352845		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
5CDS-intron	ENST00000587184	ENST00000475988		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
3UTR-3CDS	ENST00000588770	ENST00000263946		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
3UTR-3CDS	ENST00000588770	ENST00000367324		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
3UTR-3CDS	ENST00000588770	ENST00000352845		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
3UTR-intron	ENST00000588770	ENST00000475988		ChiTaRS3.1			BF830444	LAMA3	chr18	21529871	-	PKP1	chr1	201292235	+
Frame-shit	ENST00000367048	ENST00000367048		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
Frame-shit	ENST00000367048	ENST00000541436		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
5CDS-3UTR	ENST00000367048	ENST00000472052		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
Frame-shit	ENST00000541436	ENST00000367048		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
Frame-shit	ENST00000541436	ENST00000541436		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
5CDS-3UTR	ENST00000541436	ENST00000472052		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
3UTR-3CDS	ENST00000472052	ENST00000367048		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
3UTR-3CDS	ENST00000472052	ENST00000541436		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
3UTR-3UTR	ENST00000472052	ENST00000472052		ChiTaRS3.1			BG766524	ACAT2	chr6	160199294	+	ACAT2	chr6	160199703	-
intron-5UTR	ENST00000341084	ENST00000341084		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000341084	ENST00000519449		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000341084	ENST00000523255		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-5UTR	ENST00000519449	ENST00000341084		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000519449	ENST00000519449		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000519449	ENST00000523255		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-5UTR	ENST00000523255	ENST00000341084		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000523255	ENST00000519449		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000523255	ENST00000523255		ChiTaRS3.1			AK001774	RNF19A	chr8	101272196	-	RNF19A	chr8	101322171	-
intron-intron	ENST00000423313	ENST00000348035		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000423313	ENST00000356142		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000423313	ENST00000488373		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000444639	ENST00000348035		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000444639	ENST00000356142		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000444639	ENST00000488373		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000545251	ENST00000348035		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000545251	ENST00000356142		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000545251	ENST00000488373		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000567124	ENST00000348035		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000567124	ENST00000356142		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000567124	ENST00000488373		ChiTaRS3.1			BG945624	KIAA0040	chr1	175126854	+	RAC1	chr7	6441665	-
intron-intron	ENST00000327367	ENST00000327367		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000327367	ENST00000559092		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000327367	ENST00000540846		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000327367	ENST00000439724		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000327367	ENST00000537194		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000559092	ENST00000327367		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000559092	ENST00000559092		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000559092	ENST00000540846		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000559092	ENST00000439724		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000559092	ENST00000537194		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000540846	ENST00000327367		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000540846	ENST00000559092		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000540846	ENST00000540846		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000540846	ENST00000439724		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000540846	ENST00000537194		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000439724	ENST00000327367		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000439724	ENST00000559092		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000439724	ENST00000540846		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000439724	ENST00000439724		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000439724	ENST00000537194		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000537194	ENST00000327367		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000537194	ENST00000559092		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000537194	ENST00000540846		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000537194	ENST00000439724		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-intron	ENST00000537194	ENST00000537194		ChiTaRS3.1			BF770364	SMAD3	chr15	67399033	-	SMAD3	chr15	67398966	+
intron-3UTR	ENST00000444921	ENST00000346178		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000444921	ENST00000356638		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000444921	ENST00000534779		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000444921	ENST00000540933		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000444921	ENST00000534422		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-3UTR	ENST00000339582	ENST00000346178		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000339582	ENST00000356638		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000339582	ENST00000534779		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000339582	ENST00000540933		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000339582	ENST00000534422		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-3UTR	ENST00000358373	ENST00000346178		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000358373	ENST00000356638		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000358373	ENST00000534779		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000358373	ENST00000540933		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000358373	ENST00000534422		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-3UTR	ENST00000405249	ENST00000346178		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000405249	ENST00000356638		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000405249	ENST00000534779		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000405249	ENST00000540933		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000405249	ENST00000534422		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-3UTR	ENST00000480995	ENST00000346178		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000480995	ENST00000356638		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000480995	ENST00000534779		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000480995	ENST00000540933		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-intron	ENST00000480995	ENST00000534422		ChiTaRS3.1			BF893584	GRM8	chr7	126524936	-	GANAB	chr11	62392486	+
intron-5UTR	ENST00000478194	ENST00000478194		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-3UTR	ENST00000478194	ENST00000217289		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-intron	ENST00000478194	ENST00000536936		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-5UTR	ENST00000217289	ENST00000478194		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-3UTR	ENST00000217289	ENST00000217289		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-intron	ENST00000217289	ENST00000536936		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-5UTR	ENST00000536936	ENST00000478194		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-3UTR	ENST00000536936	ENST00000217289		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-intron	ENST00000536936	ENST00000536936		ChiTaRS3.1			BG059054	FERMT1	chr20	6056092	-	FERMT1	chr20	6055969	+
intron-intron	ENST00000335997	ENST00000396299		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000335997	ENST00000357727		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000335997	ENST00000396300		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000335997	ENST00000409603		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000335997	ENST00000396298		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000335997	ENST00000482692		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000396299		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000357727		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000396300		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000409603		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000396298		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000308167	ENST00000482692		ChiTaRS3.1			BF849574	ELF4	chrX	129199044	-	CREB5	chr7	28475387	-
intron-intron	ENST00000256190	ENST00000393829		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000546249		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000537728		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000264649		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000585525		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000343619		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000544137		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000256190	ENST00000587797		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000393829		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000546249		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000537728		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000264649		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000585525		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000343619		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000544137		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-intron	ENST00000527019	ENST00000587797		ChiTaRS3.1			BF905814	SBF2	chr11	10059086	-	ATP6V0A1	chr17	40661277	+
intron-3UTR	ENST00000382368	ENST00000397256		ChiTaRS3.1			AK130444	FBXL18	chr7	5552268	-	ARPC4-TTLL3	chr3	9877018	+
intron-3UTR	ENST00000453700	ENST00000397256		ChiTaRS3.1			AK130444	FBXL18	chr7	5552268	-	ARPC4-TTLL3	chr3	9877018	+
intron-intron	ENST00000371130	ENST00000276297		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000358919		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000512044		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000316609		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000511869		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000510318		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000371130	ENST00000520226		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000276297		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000358919		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000512044		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000316609		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000511869		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000510318		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000422452	ENST00000520226		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000276297		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000358919		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000512044		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000316609		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000511869		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000510318		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
intron-intron	ENST00000461429	ENST00000520226		ChiTaRS3.1			AV708814	TENM1	chrX	123513790	-	DLC1	chr8	13067726	-
3UTR-3UTR	ENST00000389749	ENST00000389749		ChiTaRS3.1			BG180204	TRMT61A	chr14	104001542	-	TRMT61A	chr14	104001639	+
intron-intron	ENST00000348035	ENST00000531326		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000348035	ENST00000392597		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000348035	ENST00000351677		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000356142	ENST00000531326		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000356142	ENST00000392597		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000356142	ENST00000351677		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000488373	ENST00000531326		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000488373	ENST00000392597		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000488373	ENST00000351677		ChiTaRS3.1			AW811214	RAC1	chr7	6418261	-	PTPN11	chr12	112898454	+
intron-intron	ENST00000397661	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000397661	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000397661	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000397661	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000592199	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000592199	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000592199	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000587760	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000587760	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587760	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000585575	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000585575	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000585575	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-3UTR	ENST00000360105	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-3UTR	ENST00000360105	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000360105	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000588228	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000588228	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588228	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000587260	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000587260	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000587260	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-3UTR	ENST00000358552	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-3UTR	ENST00000358552	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
3UTR-intron	ENST00000358552	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000397661		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000592199		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000587760		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000585575		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000588680	ENST00000360105		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000588228		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000587260		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-3UTR	ENST00000588680	ENST00000358552		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000588680	ENST00000588680		ChiTaRS3.1			BU627754	NFIX	chr19	13207671	-	NFIX	chr19	13209118	-
intron-intron	ENST00000421182	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000421182	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000421182	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000421182	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357867	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357867	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357867	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357867	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000323926	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000323926	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000323926	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000323926	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000336916	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000336916	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000336916	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000336916	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000354785	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000354785	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000354785	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000354785	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357009	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357009	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357009	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000357009	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000346544	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000346544	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000346544	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000346544	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000345488	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000345488	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000345488	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000345488	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000359671	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000359671	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000359671	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000359671	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000446046	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000446046	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000446046	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000446046	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000443816	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000443816	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000443816	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000443816	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000432072	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000432072	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000432072	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000432072	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000356005	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000356005	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000356005	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000356005	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000490833	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000490833	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000490833	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000490833	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000426059	ENST00000265239		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000426059	ENST00000455191		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000426059	ENST00000453254		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
intron-intron	ENST00000426059	ENST00000480302		ChiTaRS3.1			BF893174	FN1	chr2	216235227	+	IQCG	chr3	197677064	+
Frame-shit	ENST00000228140	ENST00000228140		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5CDS-5UTR	ENST00000228140	ENST00000526895		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5CDS-5UTR	ENST00000228140	ENST00000525634		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5UTR-3CDS	ENST00000526895	ENST00000228140		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5UTR-5UTR	ENST00000526895	ENST00000526895		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5UTR-5UTR	ENST00000526895	ENST00000525634		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
Frame-shit	ENST00000525634	ENST00000228140		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5CDS-5UTR	ENST00000525634	ENST00000526895		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
5CDS-5UTR	ENST00000525634	ENST00000525634		ChiTaRS3.1			BU195584	RPS13	chr11	17096649	-	RPS13	chr11	17098793	-
intron-intron	ENST00000413366	ENST00000420696		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000401534		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000559240		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000367897		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000540236		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000560641		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000474046		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000485769		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000413366	ENST00000540246		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000420696		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000401534		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000559240		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000367897		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000540236		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000560641		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000474046		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000485769		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000583361	ENST00000540246		ChiTaRS3.1			BG998534	PRKCA	chr17	64327025	-	PBX1	chr1	164712457	+
intron-intron	ENST00000522362	ENST00000325722		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522362	ENST00000373266		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522362	ENST00000485551		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000325722		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000373266		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000522764	ENST00000485551		ChiTaRS3.1			AK022734	PNMA2	chr8	26363153	-	KIAA0319L	chr1	36020588	-
intron-intron	ENST00000398810	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398810	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398810	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398810	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398810	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398810	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000439599	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000398812	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000335866	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402578	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000403097	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000406641	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000357271	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000407526	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000401949	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000402497	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000409478		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000329971		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000264160		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000410054		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000409606		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000483819	ENST00000443537		ChiTaRS3.1			BF985684	GRB10	chr7	50839476	+	R3HDM1	chr2	136465662	+
intron-intron	ENST00000393020	ENST00000393020		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000393020	ENST00000529221		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000393020	ENST00000314756		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000393020	ENST00000483239		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000393020	ENST00000478125		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000529221	ENST00000393020		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000529221	ENST00000529221		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000529221	ENST00000314756		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000529221	ENST00000483239		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000529221	ENST00000478125		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000314756	ENST00000393020		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000314756	ENST00000529221		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000314756	ENST00000314756		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000314756	ENST00000483239		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000314756	ENST00000478125		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000483239	ENST00000393020		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000483239	ENST00000529221		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000483239	ENST00000314756		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000483239	ENST00000483239		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000483239	ENST00000478125		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000478125	ENST00000393020		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000478125	ENST00000529221		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000478125	ENST00000314756		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000478125	ENST00000483239		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
intron-intron	ENST00000478125	ENST00000478125		ChiTaRS3.1			BF842124	TTC12	chr11	113201927	-	TTC12	chr11	113201745	+
3UTR-intron	ENST00000268171	ENST00000293826		ChiTaRS3.1			BG924324	FURIN	chr15	91426504	-	TNFSF12-TNFSF13	chr17	7462460	+
intron-intron	ENST00000566044	ENST00000594295		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000566044	ENST00000426391		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000566044	ENST00000389534		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000566044	ENST00000359973		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000455779	ENST00000594295		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000455779	ENST00000426391		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000455779	ENST00000389534		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000455779	ENST00000359973		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000299167	ENST00000594295		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000299167	ENST00000426391		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000299167	ENST00000389534		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
3UTR-intron	ENST00000299167	ENST00000359973		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000323584	ENST00000594295		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000323584	ENST00000426391		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000323584	ENST00000389534		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000323584	ENST00000359973		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000567402	ENST00000594295		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000567402	ENST00000426391		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000567402	ENST00000389534		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000567402	ENST00000359973		ChiTaRS3.1			BG992384	PHKB	chr16	47734722	-	ZNF841	chr19	52785414	-
intron-intron	ENST00000270800	ENST00000560244		ChiTaRS3.1			BG999454	IL22RA1	chr1	24447422	-	MESDC2	chr15	81274435	+
intron-intron	ENST00000270800	ENST00000261758		ChiTaRS3.1			BG999454	IL22RA1	chr1	24447422	-	MESDC2	chr15	81274435	+
intron-3UTR	ENST00000379081	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379081	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379081	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379081	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379081	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379081	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379081	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379081	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379087	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379087	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379087	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379080	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379080	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379080	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379084	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379084	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379084	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379089	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379089	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379089	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000445726	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000445726	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000445726	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000297620	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000297620	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000297620	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000379081		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000379087		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000379080		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379078	ENST00000379084		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000379089		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000445726		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-3UTR	ENST00000379078	ENST00000297620		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000379078	ENST00000379078		ChiTaRS3.1			AI961774	FAM219A	chr9	34458536	+	FAM219A	chr9	34398740	-
intron-intron	ENST00000377191	ENST00000296702		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000377191	ENST00000394421		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000377191	ENST00000509787		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000430571	ENST00000296702		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000430571	ENST00000394421		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000430571	ENST00000509787		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000539513	ENST00000296702		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000539513	ENST00000394421		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000539513	ENST00000509787		ChiTaRS3.1			BF947784	XRN2	chr20	21308509	-	TCERG1	chr5	145843511	+
intron-intron	ENST00000405303	ENST00000389794		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000405303	ENST00000389793		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000405303	ENST00000536965		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000405303	ENST00000473037		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000399920	ENST00000389794		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000399920	ENST00000389793		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000399920	ENST00000536965		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000399920	ENST00000473037		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000304584	ENST00000389794		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000304584	ENST00000389793		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000304584	ENST00000536965		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000304584	ENST00000473037		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000508888	ENST00000389794		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000508888	ENST00000389793		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000508888	ENST00000536965		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
intron-intron	ENST00000508888	ENST00000473037		ChiTaRS3.1			BF897244	TAPT1	chr4	16222656	-	LYST	chr1	235864701	-
In-frame	ENST00000337002	ENST00000337002		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
Frame-shit	ENST00000337002	ENST00000480708		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
5CDS-intron	ENST00000337002	ENST00000470355		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
In-frame	ENST00000480708	ENST00000337002		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
Frame-shit	ENST00000480708	ENST00000480708		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
5CDS-intron	ENST00000480708	ENST00000470355		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
intron-3CDS	ENST00000470355	ENST00000337002		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
intron-3CDS	ENST00000470355	ENST00000480708		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
intron-intron	ENST00000470355	ENST00000470355		ChiTaRS3.1			BU676684	SEC62	chr3	169700555	-	SEC62	chr3	169710538	-
intron-intron	ENST00000399782	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000399782	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000399782	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000399782	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000399782	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000399782	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000399782	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000399782	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000399782	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000317582	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000317582	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000317582	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000317582	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000543133	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000543133	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000543133	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000543133	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000538149	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000538149	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000538149	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000538149	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000337612	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000337612	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-3UTR	ENST00000337612	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
5CDS-intron	ENST00000337612	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000493680	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000493680	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-3UTR	ENST00000493680	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000493680	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000355028	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000355028	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000355028	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000355028	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000418951	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000418951	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000418951	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000418951	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000399782		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000485631	ENST00000317582		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000485631	ENST00000543133		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000538149		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000337612		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000493680		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-3UTR	ENST00000485631	ENST00000355028		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000418951		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
3UTR-intron	ENST00000485631	ENST00000485631		ChiTaRS3.1			AI935654	BCL2L13	chr22	18209871	-	BCL2L13	chr22	18210837	-
intron-intron	ENST00000253408	ENST00000429964		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000253408	ENST00000506784		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000253408	ENST00000360066		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000253408	ENST00000509056		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-intron	ENST00000588735	ENST00000429964		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000588735	ENST00000506784		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000588735	ENST00000360066		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000588735	ENST00000509056		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-intron	ENST00000435360	ENST00000429964		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000435360	ENST00000506784		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000435360	ENST00000360066		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000435360	ENST00000509056		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-intron	ENST00000586793	ENST00000429964		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000586793	ENST00000506784		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000586793	ENST00000360066		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000586793	ENST00000509056		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-intron	ENST00000591327	ENST00000429964		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000591327	ENST00000506784		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000591327	ENST00000360066		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3UTR	ENST00000591327	ENST00000509056		ChiTaRS3.1			AW499014	GFAP	chr17	42983803	-	CDK18	chr1	205500672	-
intron-3CDS	ENST00000278379	ENST00000429084		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000278379	ENST00000359593		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000278379	ENST00000478501		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000278379	ENST00000421755		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-intron	ENST00000278379	ENST00000422582		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000395750	ENST00000429084		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000395750	ENST00000359593		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000395750	ENST00000478501		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000395750	ENST00000421755		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-intron	ENST00000395750	ENST00000422582		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000395753	ENST00000429084		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000395753	ENST00000359593		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000395753	ENST00000478501		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000395753	ENST00000421755		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-intron	ENST00000395753	ENST00000422582		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000606205	ENST00000429084		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000606205	ENST00000359593		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000606205	ENST00000478501		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000606205	ENST00000421755		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-intron	ENST00000606205	ENST00000422582		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000479543	ENST00000429084		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000479543	ENST00000359593		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000479543	ENST00000478501		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3UTR	ENST00000479543	ENST00000421755		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-intron	ENST00000479543	ENST00000422582		ChiTaRS3.1			BF922824	SLC1A2	chr11	35274643	+	AP4M1	chr7	99699576	-
intron-3CDS	ENST00000338086	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000338086	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000319801	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000319801	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000361078	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000361078	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000536417	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000536417	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000403432	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000403432	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000420234	ENST00000299138		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-3CDS	ENST00000420234	ENST00000568642		ChiTaRS3.1			AK025774	PUM2	chr2	20486461	-	VPS35	chr16	46712955	-
intron-intron	ENST00000398004	ENST00000398004		ChiTaRS3.1			AI970474	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000398004	ENST00000538043		ChiTaRS3.1			AI970474	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000538043	ENST00000398004		ChiTaRS3.1			AI970474	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000538043	ENST00000538043		ChiTaRS3.1			AI970474	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-3UTR	ENST00000503581	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000503581	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000370621	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000370621	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000370616	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000370616	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000393380	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000393380	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000342421	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000342421	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000370618	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000370618	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3UTR	ENST00000486069	ENST00000264896		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-intron	ENST00000486069	ENST00000452464		ChiTaRS3.1			AV711464	EYS	chr6	64489077	+	SCARB2	chr4	77080626	-
intron-3CDS	ENST00000287878	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000287878	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000418337	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000418337	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000433631	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000433631	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000492843	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000492843	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000392801	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000392801	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000461529	ENST00000397149		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
intron-3CDS	ENST00000461529	ENST00000536631		ChiTaRS3.1			BF912904	PRKAG2	chr7	151454489	+	SMU1	chr9	33057606	+
3UTR-3CDS	ENST00000381873	ENST00000381873		ChiTaRS3.1			BP348884	SNPH	chr20	1288840	+	SNPH	chr20	1285918	+
3UTR-3CDS	ENST00000381873	ENST00000381867		ChiTaRS3.1			BP348884	SNPH	chr20	1288840	+	SNPH	chr20	1285918	+
3UTR-3CDS	ENST00000381867	ENST00000381873		ChiTaRS3.1			BP348884	SNPH	chr20	1288840	+	SNPH	chr20	1285918	+
3UTR-3CDS	ENST00000381867	ENST00000381867		ChiTaRS3.1			BP348884	SNPH	chr20	1288840	+	SNPH	chr20	1285918	+
3UTR-intron	ENST00000534336	ENST00000215790		ChiTaRS3.1			BG986934	MALAT1	chr11	65267100	+	TBC1D10A	chr22	30715043	-
3UTR-intron	ENST00000534336	ENST00000403477		ChiTaRS3.1			BG986934	MALAT1	chr11	65267100	+	TBC1D10A	chr22	30715043	-
3UTR-intron	ENST00000534336	ENST00000403362		ChiTaRS3.1			BG986934	MALAT1	chr11	65267100	+	TBC1D10A	chr22	30715043	-
3UTR-intron	ENST00000534336	ENST00000490449		ChiTaRS3.1			BG986934	MALAT1	chr11	65267100	+	TBC1D10A	chr22	30715043	-
intron-intron	ENST00000216484	ENST00000464611		ChiTaRS3.1			AW803684	SPTLC2	chr14	77972521	+	ACTB	chr7	5567258	+
intron-3UTR	ENST00000216484	ENST00000331789		ChiTaRS3.1			AW803684	SPTLC2	chr14	77972521	+	ACTB	chr7	5567258	+
intron-intron	ENST00000556264	ENST00000464611		ChiTaRS3.1			AW803684	SPTLC2	chr14	77972521	+	ACTB	chr7	5567258	+
intron-3UTR	ENST00000556264	ENST00000331789		ChiTaRS3.1			AW803684	SPTLC2	chr14	77972521	+	ACTB	chr7	5567258	+
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY282405	MLLT3	chr9	20372883	-	KMT2A	chr11	118359141	+
5CDS-intron	ENST00000484157	ENST00000384756		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000364799		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000384693		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000383926		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000516331		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000384706		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000363981		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000384147		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000484157	ENST00000365607		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000384756		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000364799		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000384693		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000383926		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000516331		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000384706		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000363981		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000384147		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000303343	ENST00000365607		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000384756		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000364799		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000384693		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000383926		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000516331		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000384706		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000363981		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000384147		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368404	ENST00000365607		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000384756		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000364799		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000384693		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000383926		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000516331		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000384706		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000363981		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000384147		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
5CDS-intron	ENST00000368401	ENST00000365607		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000384756		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000364799		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000384693		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000383926		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000516331		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000384706		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000363981		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000384147		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-intron	ENST00000368405	ENST00000365607		ChiTaRS3.1			AW794624	SLC50A1	chr1	155110106	+	SNHG1	chr11	62620013	+
intron-3UTR	ENST00000390168	ENST00000225972		ChiTaRS3.1			AF074644	H19	chr11	2018791	-	LRRC59	chr17	48460088	-
intron-intron	ENST00000390168	ENST00000576448		ChiTaRS3.1			AF074644	H19	chr11	2018791	-	LRRC59	chr17	48460088	-
intron-3UTR	ENST00000458659	ENST00000344924		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000458659	ENST00000418040		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000458659	ENST00000393132		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000501704	ENST00000344924		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000501704	ENST00000418040		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000501704	ENST00000393132		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000261489	ENST00000344924		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000261489	ENST00000418040		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000261489	ENST00000393132		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000460842	ENST00000344924		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000460842	ENST00000418040		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
intron-3UTR	ENST00000460842	ENST00000393132		ChiTaRS3.1			BQ367874	TSC22D1	chr13	45008606	+	BPGM	chr7	134363825	+
3UTR-3CDS	ENST00000243167	ENST00000243167		ChiTaRS3.1			BF766834	FAAH	chr1	46879292	+	FAAH	chr1	46879145	-
3UTR-intron	ENST00000243167	ENST00000493735		ChiTaRS3.1			BF766834	FAAH	chr1	46879292	+	FAAH	chr1	46879145	-
intron-3CDS	ENST00000493735	ENST00000243167		ChiTaRS3.1			BF766834	FAAH	chr1	46879292	+	FAAH	chr1	46879145	-
intron-intron	ENST00000493735	ENST00000493735		ChiTaRS3.1			BF766834	FAAH	chr1	46879292	+	FAAH	chr1	46879145	-
Frame-shit	ENST00000229239	ENST00000229239		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000229239	ENST00000396856		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000229239	ENST00000396861		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000229239	ENST00000396859		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000229239	ENST00000396858		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396856	ENST00000229239		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396856	ENST00000396856		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396856	ENST00000396861		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396856	ENST00000396859		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396856	ENST00000396858		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396861	ENST00000229239		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396861	ENST00000396856		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396861	ENST00000396861		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396861	ENST00000396859		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396861	ENST00000396858		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396859	ENST00000229239		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396859	ENST00000396856		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396859	ENST00000396861		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396859	ENST00000396859		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396859	ENST00000396858		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396858	ENST00000229239		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396858	ENST00000396856		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396858	ENST00000396861		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396858	ENST00000396859		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
Frame-shit	ENST00000396858	ENST00000396858		ChiTaRS3.1			BG391044	GAPDH	chr12	6646125	-	GAPDH	chr12	6646154	+
intron-intron	ENST00000375326	ENST00000366508		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000375326	ENST00000326225		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000375326	ENST00000391829		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000375326	ENST00000470300		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000415431	ENST00000366508		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000415431	ENST00000326225		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000415431	ENST00000391829		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-intron	ENST00000415431	ENST00000470300		ChiTaRS3.1			BF806754	FBP1	chr9	97365780	+	AHCTF1	chr1	247075544	-
intron-3CDS	ENST00000435064	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000435064	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000435064	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000411962	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000411962	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000411962	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000462432	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000462432	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000462432	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000540437	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000540437	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000540437	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000421495	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000421495	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000421495	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000419704	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000419704	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000419704	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000450926	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000450926	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000450926	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000545578	ENST00000435064		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-3CDS	ENST00000545578	ENST00000411962		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000462432		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000540437		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000421495		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000419704		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000450926		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000545578	ENST00000545578		ChiTaRS3.1			BQ326324	CPSF3L	chr1	1247473	-	CPSF3L	chr1	1248328	-
intron-5UTR	ENST00000426559	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000426559	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-5UTR	ENST00000455785	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000455785	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-5UTR	ENST00000399728	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000399728	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-5UTR	ENST00000465604	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000465604	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-5UTR	ENST00000357865	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000357865	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-5UTR	ENST00000374291	ENST00000337288		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
intron-intron	ENST00000374291	ENST00000462501		ChiTaRS3.1			BQ946944	STMN1	chr1	26232898	+	STARD7	chr2	96874546	-
3UTR-3CDS	ENST00000297323	ENST00000371222		ChiTaRS3.1			BG315024	ADCY1	chr7	45761756	+	JUN	chr1	59248643	+
intron-3CDS	ENST00000432715	ENST00000371222		ChiTaRS3.1			BG315024	ADCY1	chr7	45761756	+	JUN	chr1	59248643	+
intron-3UTR	ENST00000396594	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000396594	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000396594	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000396594	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000396594	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000396594	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000539815	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000539815	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539815	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539815	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539815	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539815	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000543356	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000543356	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000543356	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000543356	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000543356	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000543356	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000539208	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000539208	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539208	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539208	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539208	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000539208	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000447283	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000447283	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000447283	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000447283	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000447283	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000447283	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000377902	ENST00000396594		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000377902	ENST00000539815		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000377902	ENST00000543356		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000377902	ENST00000539208		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000377902	ENST00000447283		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-intron	ENST00000377902	ENST00000377902		ChiTaRS3.1			BQ417504	GNE	chr9	36214755	+	GNE	chr9	36215102	-
intron-3UTR	ENST00000254051	ENST00000300571		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
intron-intron	ENST00000254051	ENST00000569102		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
intron-intron	ENST00000254051	ENST00000535671		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
intron-3UTR	ENST00000254051	ENST00000569479		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
intron-intron	ENST00000254051	ENST00000537135		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
intron-intron	ENST00000254051	ENST00000569847		ChiTaRS3.1			BU754064	TNS4	chr17	38632145	+	GPRC5B	chr16	19870553	+
3UTR-3UTR	ENST00000261267	ENST00000591790		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000504904		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000292069		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-3UTR	ENST00000261267	ENST00000342634		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
3UTR-intron	ENST00000261267	ENST00000589652		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000591790		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000504904		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000292069		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000549690	ENST00000342634		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000549690	ENST00000589652		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000591790		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000504904		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000292069		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000548839	ENST00000342634		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-intron	ENST00000548839	ENST00000589652		ChiTaRS3.1			AW770544	LYZ	chr12	69747537	-	ZNF667	chr19	56952293	+
intron-3UTR	ENST00000368223	ENST00000297494		ChiTaRS3.1			BF955684	NES	chr1	156641128	+	NOS3	chr7	150711426	+
intron-3UTR	ENST00000368223	ENST00000461406		ChiTaRS3.1			BF955684	NES	chr1	156641128	+	NOS3	chr7	150711426	+
intron-intron	ENST00000368223	ENST00000484524		ChiTaRS3.1			BF955684	NES	chr1	156641128	+	NOS3	chr7	150711426	+
intron-intron	ENST00000368223	ENST00000467517		ChiTaRS3.1			BF955684	NES	chr1	156641128	+	NOS3	chr7	150711426	+
intron-intron	ENST00000368223	ENST00000477227		ChiTaRS3.1			BF955684	NES	chr1	156641128	+	NOS3	chr7	150711426	+
intron-3UTR	ENST00000565749	ENST00000264249		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000565749	ENST00000542617		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000565749	ENST00000409701		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000565749	ENST00000485085		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-3UTR	ENST00000442925	ENST00000264249		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000442925	ENST00000542617		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000442925	ENST00000409701		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000442925	ENST00000485085		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-3UTR	ENST00000422265	ENST00000264249		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000422265	ENST00000542617		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000422265	ENST00000409701		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000422265	ENST00000485085		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-3UTR	ENST00000273145	ENST00000264249		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000273145	ENST00000542617		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000273145	ENST00000409701		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000273145	ENST00000485085		ChiTaRS3.1			BP392914	ACKR2	chr17	40831828	+	CHST10	chr2	101008622	-
intron-intron	ENST00000435275	ENST00000435275		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000435275	ENST00000440692		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000435275	ENST00000372360		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000435275	ENST00000476545		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000435275	ENST00000360830		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000440692	ENST00000435275		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000440692	ENST00000440692		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000440692	ENST00000372360		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000440692	ENST00000476545		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000440692	ENST00000360830		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000372360	ENST00000435275		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000372360	ENST00000440692		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000372360	ENST00000372360		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000372360	ENST00000476545		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000372360	ENST00000360830		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000476545	ENST00000435275		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000476545	ENST00000440692		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000476545	ENST00000372360		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000476545	ENST00000476545		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000476545	ENST00000360830		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000360830	ENST00000435275		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000360830	ENST00000440692		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000360830	ENST00000372360		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000360830	ENST00000476545		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-intron	ENST00000360830	ENST00000360830		ChiTaRS3.1			AW130504	RPS24	chr10	79800107	-	RPS24	chr10	79800088	+
intron-3UTR	ENST00000442092	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000442092	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000266022	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000266022	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000443081	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000443081	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000539992	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000539992	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000441115	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000441115	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000422955	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000422955	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3UTR	ENST00000421682	ENST00000296755		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-intron	ENST00000421682	ENST00000504183		ChiTaRS3.1			BF921414	RBM6	chr3	50003525	-	MAP1B	chr5	71504392	-
intron-3CDS	ENST00000359786	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000359786	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000359786	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000359786	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000359786	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000359786	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000438665	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000438665	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000438665	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000438665	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000438665	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000438665	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000575158	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000575158	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000575158	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000575158	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000575158	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000575158	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000361007	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000361007	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000361007	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000361007	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000361007	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000361007	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000545534	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000545534	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000545534	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000545534	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000545534	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000545534	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000573198	ENST00000359786		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-3CDS	ENST00000573198	ENST00000438665		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000573198	ENST00000575158		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000573198	ENST00000361007		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-5UTR	ENST00000573198	ENST00000545534		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000573198	ENST00000573198		ChiTaRS3.1			BQ425374	MYO1C	chr17	1367799	-	MYO1C	chr17	1387598	-
intron-intron	ENST00000389048	ENST00000609205		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-intron	ENST00000389048	ENST00000360270		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-intron	ENST00000431873	ENST00000609205		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-intron	ENST00000431873	ENST00000360270		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-intron	ENST00000498037	ENST00000609205		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-intron	ENST00000498037	ENST00000360270		ChiTaRS3.1			AF295079	ALK	chr2	29446408	-	MSN	chrX	64958868	+
intron-3CDS	ENST00000360890	ENST00000315183		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000360890	ENST00000562829		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000360890	ENST00000395799		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000360890	ENST00000432286		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-3CDS	ENST00000413659	ENST00000315183		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000413659	ENST00000562829		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000413659	ENST00000395799		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000413659	ENST00000432286		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-3CDS	ENST00000325239	ENST00000315183		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000325239	ENST00000562829		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000325239	ENST00000395799		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000325239	ENST00000432286		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-3CDS	ENST00000465910	ENST00000315183		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000465910	ENST00000562829		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000465910	ENST00000395799		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000465910	ENST00000432286		ChiTaRS3.1			AV730574	WDFY4	chr10	50000063	-	TNRC6A	chr16	24816958	-
intron-intron	ENST00000483233	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000483233	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000315877	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000315877	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000487005	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000487005	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000395008	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000395008	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000361143	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000361143	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000461108	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000461108	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000525795	ENST00000336257		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000525795	ENST00000541075		ChiTaRS3.1			AK075034	ABHD14B	chr3	52003200	-	CHST5	chr16	75572887	-
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			AW511504	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000461783	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000461783	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000461783	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000461783	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000449545	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000449545	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000449545	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000449545	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000367174	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000367174	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000367174	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000367174	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456144	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456144	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456144	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456144	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000318981	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000318981	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000318981	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000318981	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000360366	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000360366	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000360366	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000360366	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000529824	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000529824	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000529824	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000529824	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456877	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456877	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456877	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000456877	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000528391	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000528391	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000528391	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000528391	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000275246	ENST00000421797		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000275246	ENST00000429546		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000275246	ENST00000352689		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000275246	ENST00000498778		ChiTaRS3.1			BQ371784	TIAM2	chr6	155161303	+	MKLN1	chr7	131124903	+
intron-intron	ENST00000454498	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000454498	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000332246	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000332246	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000311540	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000311540	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000522854	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000522854	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000544602	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000544602	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000518542	ENST00000527986		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000518542	ENST00000528337		ChiTaRS3.1			BG993644	CSGALNACT1	chr8	19261748	-	WAC-AS1	chr10	28820169	+
intron-intron	ENST00000225964	ENST00000441669		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000316891		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000372818		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000491865		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000541099		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000537440		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000537223		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000545233		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
intron-intron	ENST00000225964	ENST00000544981		ChiTaRS3.1			BQ183204	COL1A1	chr17	48262757	+	TRIT1	chr1	40344176	-
3UTR-3UTR	ENST00000404338	ENST00000404338		ChiTaRS3.1			BG281504	ARHGAP35	chr19	47506810	+	ARHGAP35	chr19	47505461	+
3UTR-intron	ENST00000404338	ENST00000598548		ChiTaRS3.1			BG281504	ARHGAP35	chr19	47506810	+	ARHGAP35	chr19	47505461	+
intron-3UTR	ENST00000598548	ENST00000404338		ChiTaRS3.1			BG281504	ARHGAP35	chr19	47506810	+	ARHGAP35	chr19	47505461	+
intron-intron	ENST00000598548	ENST00000598548		ChiTaRS3.1			BG281504	ARHGAP35	chr19	47506810	+	ARHGAP35	chr19	47505461	+
intron-3CDS	ENST00000262305	ENST00000288986		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000262305	ENST00000481752		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000262305	ENST00000469404		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000457159	ENST00000288986		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000457159	ENST00000481752		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000457159	ENST00000469404		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000450428	ENST00000288986		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000450428	ENST00000481752		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-3CDS	ENST00000450428	ENST00000469404		ChiTaRS3.1			BG998714	RAB11FIP3	chr16	546434	+	NCK1	chr3	136665066	+
intron-intron	ENST00000222345	ENST00000440886		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000222345	ENST00000370611		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000222345	ENST00000491034		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000476317	ENST00000440886		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000476317	ENST00000370611		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000476317	ENST00000491034		ChiTaRS3.1			AW593591	SIPA1L3	chr19	38535190	-	LPAR3	chr1	85355514	+
intron-intron	ENST00000256413	ENST00000396720		ChiTaRS3.1			BF931044	CTIF	chr18	46353821	-	GLTSCR1	chr19	48118644	-
intron-intron	ENST00000382998	ENST00000396720		ChiTaRS3.1			BF931044	CTIF	chr18	46353821	-	GLTSCR1	chr19	48118644	-
intron-intron	ENST00000592658	ENST00000396720		ChiTaRS3.1			BF931044	CTIF	chr18	46353821	-	GLTSCR1	chr19	48118644	-
intron-3CDS	ENST00000409508	ENST00000377298		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000409508	ENST00000361311		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000409508	ENST00000377288		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-intron	ENST00000409508	ENST00000477264		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000328843	ENST00000377298		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000328843	ENST00000361311		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000328843	ENST00000377288		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-intron	ENST00000328843	ENST00000477264		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000465593	ENST00000377298		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000465593	ENST00000361311		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-3CDS	ENST00000465593	ENST00000377288		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-intron	ENST00000465593	ENST00000477264		ChiTaRS3.1			BG323744	DNAH11	chr7	21759373	+	CLSTN1	chr1	9809706	-
intron-intron	ENST00000296591	ENST00000268251		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000296591	ENST00000396600		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000296591	ENST00000563215		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000296591	ENST00000567812		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000296591	ENST00000425191		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000296591	ENST00000569156		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000268251		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000396600		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000563215		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000567812		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000425191		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000380138	ENST00000569156		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000268251		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000396600		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000563215		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000567812		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000425191		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-intron	ENST00000510271	ENST00000569156		ChiTaRS3.1			BF944944	EDIL3	chr5	83449119	+	ABAT	chr16	8835350	-
intron-3UTR	ENST00000053468	ENST00000307720		ChiTaRS3.1			AV681824	MRPS10	chr6	42175264	-	PPID	chr4	159630411	-
3UTR-3CDS	ENST00000602402	ENST00000602402		ChiTaRS3.1			AV747684	DNAJC3	chr13	96445108	+	DNAJC3	chr13	96377448	+
3UTR-3CDS	ENST00000602402	ENST00000376795		ChiTaRS3.1			AV747684	DNAJC3	chr13	96445108	+	DNAJC3	chr13	96377448	+
intron-3CDS	ENST00000376795	ENST00000602402		ChiTaRS3.1			AV747684	DNAJC3	chr13	96445108	+	DNAJC3	chr13	96377448	+
intron-3CDS	ENST00000376795	ENST00000376795		ChiTaRS3.1			AV747684	DNAJC3	chr13	96445108	+	DNAJC3	chr13	96377448	+
intron-3CDS	ENST00000216281	ENST00000216281		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000216281	ENST00000334701		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000216281	ENST00000441629		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-intron	ENST00000216281	ENST00000558600		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000334701	ENST00000216281		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000334701	ENST00000334701		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000334701	ENST00000441629		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-intron	ENST00000334701	ENST00000558600		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000441629	ENST00000216281		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000441629	ENST00000334701		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000441629	ENST00000441629		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-intron	ENST00000441629	ENST00000558600		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000558600	ENST00000216281		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000558600	ENST00000334701		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-3CDS	ENST00000558600	ENST00000441629		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-intron	ENST00000558600	ENST00000558600		ChiTaRS3.1			BU685904	HSP90AA1	chr14	102549517	+	HSP90AA1	chr14	102550286	-
intron-intron	ENST00000319359	ENST00000278550		ChiTaRS3.1			AW512214	ELL3	chr15	44086175	-	TENM4	chr11	79145163	+
intron-intron	ENST00000319359	ENST00000533038		ChiTaRS3.1			AW512214	ELL3	chr15	44086175	-	TENM4	chr11	79145163	+
intron-intron	ENST00000497465	ENST00000278550		ChiTaRS3.1			AW512214	ELL3	chr15	44086175	-	TENM4	chr11	79145163	+
intron-intron	ENST00000497465	ENST00000533038		ChiTaRS3.1			AW512214	ELL3	chr15	44086175	-	TENM4	chr11	79145163	+
intron-intron	ENST00000342382	ENST00000396668		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000342382	ENST00000396667		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000342382	ENST00000453686		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000303525	ENST00000396668		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000303525	ENST00000396667		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000303525	ENST00000453686		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000382021	ENST00000396668		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000382021	ENST00000396667		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000382021	ENST00000453686		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000512136	ENST00000396668		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000512136	ENST00000396667		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-intron	ENST00000512136	ENST00000453686		ChiTaRS3.1			BQ310434	DNAJC21	chr5	34944975	-	TMEM106B	chr7	12258146	-
intron-3UTR	ENST00000253048	ENST00000253048		ChiTaRS3.1			BQ186744	ZC3H4	chr19	47567697	+	ZC3H4	chr19	47567752	-
intron-intron	ENST00000253048	ENST00000594019		ChiTaRS3.1			BQ186744	ZC3H4	chr19	47567697	+	ZC3H4	chr19	47567752	-
intron-3UTR	ENST00000594019	ENST00000253048		ChiTaRS3.1			BQ186744	ZC3H4	chr19	47567697	+	ZC3H4	chr19	47567752	-
intron-intron	ENST00000594019	ENST00000594019		ChiTaRS3.1			BQ186744	ZC3H4	chr19	47567697	+	ZC3H4	chr19	47567752	-
intron-3CDS	ENST00000193403	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000193403	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000193403	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000394419	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000394419	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000394419	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000438964	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000438964	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000438964	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000376839	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000376839	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000376839	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000538545	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000538545	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000538545	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000554508	ENST00000254846		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-3CDS	ENST00000554508	ENST00000448097		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000554508	ENST00000572030		ChiTaRS3.1			BF810594	ACTN1	chr14	69387594	-	KDM6B	chr17	7752664	-
intron-intron	ENST00000334482	ENST00000457913		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000334482	ENST00000277225		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000334482	ENST00000441147		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000334482	ENST00000542028		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000334482	ENST00000497489		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000301522	ENST00000457913		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000301522	ENST00000277225		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000301522	ENST00000441147		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000301522	ENST00000542028		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000301522	ENST00000497489		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000435703	ENST00000457913		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000435703	ENST00000277225		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000435703	ENST00000441147		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000435703	ENST00000542028		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000435703	ENST00000497489		ChiTaRS3.1			BU742294	PRDX2	chr19	12907721	+	ZNF462	chr9	109638362	-
intron-intron	ENST00000607772	ENST00000607772		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000607772	ENST00000479339		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000607772	ENST00000433165		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000479339	ENST00000607772		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000479339	ENST00000479339		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000479339	ENST00000433165		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000433165	ENST00000607772		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000433165	ENST00000479339		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000433165	ENST00000433165		ChiTaRS3.1			AK027364	CNKSR3	chr6	154778110	-	CNKSR3	chr6	154781351	-
intron-intron	ENST00000335312	ENST00000560302		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000335312	ENST00000394518		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000335312	ENST00000361243		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000335312	ENST00000560579		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000335312	ENST00000394510		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000539785	ENST00000560302		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000539785	ENST00000394518		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000539785	ENST00000361243		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000539785	ENST00000560579		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000539785	ENST00000394510		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000589578	ENST00000560302		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000589578	ENST00000394518		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000589578	ENST00000361243		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000589578	ENST00000560579		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000589578	ENST00000394510		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000537021	ENST00000560302		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000537021	ENST00000394518		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000537021	ENST00000361243		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000537021	ENST00000560579		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000537021	ENST00000394510		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000587482	ENST00000560302		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000587482	ENST00000394518		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000587482	ENST00000361243		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000587482	ENST00000560579		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000587482	ENST00000394510		ChiTaRS3.1			BF873394	PIP5K1C	chr19	3692098	+	AKAP13	chr15	86166954	+
intron-intron	ENST00000508802	ENST00000324989		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000508802	ENST00000397890		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000508802	ENST00000511535		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000508802	ENST00000512574		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000261439	ENST00000324989		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000261439	ENST00000397890		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000261439	ENST00000511535		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000261439	ENST00000512574		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000402522	ENST00000324989		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000402522	ENST00000397890		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000402522	ENST00000511535		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000402522	ENST00000512574		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000407365	ENST00000324989		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000407365	ENST00000397890		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000407365	ENST00000511535		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
intron-intron	ENST00000407365	ENST00000512574		ChiTaRS3.1			AW014054	TBC1D1	chr4	38016127	-	CRMP1	chr4	5836506	+
3UTR-3UTR	ENST00000312413	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-3UTR	ENST00000312413	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000312413	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000312413	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000312413	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000312413	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-3UTR	ENST00000346436	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-3UTR	ENST00000346436	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000346436	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000346436	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000346436	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
3UTR-intron	ENST00000346436	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376497	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376497	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376497	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376497	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376497	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376497	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376487	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376487	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376487	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376487	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376487	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376487	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376496	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376496	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376496	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376496	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376496	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376496	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376492	ENST00000312413		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000376492	ENST00000346436		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376492	ENST00000376497		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376492	ENST00000376487		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376492	ENST00000376496		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-intron	ENST00000376492	ENST00000376492		ChiTaRS3.1			BG952004	CLCN6	chr1	11902429	-	CLCN6	chr1	11902746	+
intron-3UTR	ENST00000249837	ENST00000216297		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-intron	ENST00000249837	ENST00000555943		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-3UTR	ENST00000261517	ENST00000216297		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-intron	ENST00000261517	ENST00000555943		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-3UTR	ENST00000395896	ENST00000216297		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-intron	ENST00000395896	ENST00000555943		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-3UTR	ENST00000395898	ENST00000216297		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-intron	ENST00000395898	ENST00000555943		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-3UTR	ENST00000558919	ENST00000216297		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-intron	ENST00000558919	ENST00000555943		ChiTaRS3.1			BF852894	VPS13C	chr15	62209775	+	SUPT16H	chr14	21819920	+
intron-3UTR	ENST00000539068	ENST00000539068		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000539068	ENST00000536438		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000539068	ENST00000357266		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000539068	ENST00000540787		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000539068	ENST00000542713		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000539068		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000536438		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000536438	ENST00000357266		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000536438	ENST00000540787		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000536438	ENST00000542713		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000539068		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000536438		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000357266	ENST00000357266		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000357266	ENST00000540787		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000357266	ENST00000542713		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000539068		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000536438		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000540787	ENST00000357266		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000540787	ENST00000540787		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000540787	ENST00000542713		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000539068		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000536438		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-3UTR	ENST00000542713	ENST00000357266		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000542713	ENST00000540787		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-intron	ENST00000542713	ENST00000542713		ChiTaRS3.1			BU618494	FKBP5	chr6	35541902	+	FKBP5	chr6	35541893	-
intron-5UTR	ENST00000380394	ENST00000392259		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380394	ENST00000392266		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380394	ENST00000264274		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380394	ENST00000432109		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380394	ENST00000264275		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380394	ENST00000392258		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-3UTR	ENST00000380394	ENST00000490682		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380394	ENST00000358485		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380394	ENST00000323492		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000392259		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000392266		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000264274		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000432109		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000264275		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000498815	ENST00000392258		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-3UTR	ENST00000498815	ENST00000490682		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000498815	ENST00000358485		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000498815	ENST00000323492		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000392259		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000392266		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000264274		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000432109		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000264275		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380384	ENST00000392258		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-3UTR	ENST00000380384	ENST00000490682		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380384	ENST00000358485		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380384	ENST00000323492		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000392259		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000392266		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000264274		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000432109		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000264275		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000315377	ENST00000392258		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-3UTR	ENST00000315377	ENST00000490682		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000315377	ENST00000358485		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000315377	ENST00000323492		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000392259		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000392266		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000264274		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000432109		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000264275		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-5UTR	ENST00000380381	ENST00000392258		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-3UTR	ENST00000380381	ENST00000490682		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380381	ENST00000358485		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
intron-intron	ENST00000380381	ENST00000323492		ChiTaRS3.1			BG575834	RPS6	chr9	19378458	-	CASP8	chr2	202098783	+
3UTR-intron	ENST00000373206	ENST00000285238		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000515707		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000427699		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000510891		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000285238		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000515707		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000427699		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000510891		ChiTaRS3.1			BG954174	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
5CDS-3UTR	ENST00000357559	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-3UTR	ENST00000357559	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-intron	ENST00000357559	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-3UTR	ENST00000305586	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-3UTR	ENST00000305586	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-intron	ENST00000305586	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-3UTR	ENST00000491674	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-3UTR	ENST00000491674	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-intron	ENST00000491674	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-3UTR	ENST00000491062	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-3UTR	ENST00000491062	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-intron	ENST00000491062	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-3UTR	ENST00000468861	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-3UTR	ENST00000468861	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5UTR-intron	ENST00000468861	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-3UTR	ENST00000445140	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-3UTR	ENST00000445140	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-intron	ENST00000445140	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-3UTR	ENST00000480918	ENST00000374023		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-3UTR	ENST00000480918	ENST00000374026		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
5CDS-intron	ENST00000480918	ENST00000374021		ChiTaRS3.1			BU566094	FXR1	chr3	180653010	+	C6orf106	chr6	34555144	-
intron-intron	ENST00000535814	ENST00000578312		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-3UTR	ENST00000535814	ENST00000262394		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000535814	ENST00000579733		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000535814	ENST00000583193		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000535814	ENST00000581185		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000535814	ENST00000427287		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000535814	ENST00000348811		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000578312		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-3UTR	ENST00000374902	ENST00000262394		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000579733		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000583193		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000581185		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000427287		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000374902	ENST00000348811		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000578312		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-3UTR	ENST00000477648	ENST00000262394		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000579733		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000583193		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000581185		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000427287		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000477648	ENST00000348811		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000578312		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-3UTR	ENST00000537512	ENST00000262394		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000579733		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000583193		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000581185		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000427287		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-intron	ENST00000537512	ENST00000348811		ChiTaRS3.1			AK091514	TEX10	chr9	103067825	-	WSB1	chr17	25639972	+
intron-3CDS	ENST00000216190	ENST00000528737		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000216190	ENST00000420244		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000216190	ENST00000529985		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000216190	ENST00000361723		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000216190	ENST00000533703		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000216190	ENST00000531147		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000478547	ENST00000528737		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000478547	ENST00000420244		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000478547	ENST00000529985		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000478547	ENST00000361723		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000478547	ENST00000533703		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000478547	ENST00000531147		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000541106	ENST00000528737		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000541106	ENST00000420244		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000541106	ENST00000529985		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000541106	ENST00000361723		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000541106	ENST00000533703		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000541106	ENST00000531147		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000405442	ENST00000528737		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000405442	ENST00000420244		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000405442	ENST00000529985		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000405442	ENST00000361723		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000405442	ENST00000533703		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-intron	ENST00000405442	ENST00000531147		ChiTaRS3.1			BG991794	EIF3D	chr22	36922128	+	FAM111A	chr11	58919481	-
intron-3CDS	ENST00000355173	ENST00000355173		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000355173	ENST00000556751		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000355173	ENST00000443071		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-intron	ENST00000355173	ENST00000554747		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000556751	ENST00000355173		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000556751	ENST00000556751		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000556751	ENST00000443071		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-intron	ENST00000556751	ENST00000554747		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000443071	ENST00000355173		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000443071	ENST00000556751		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000443071	ENST00000443071		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-intron	ENST00000443071	ENST00000554747		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000554747	ENST00000355173		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000554747	ENST00000556751		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000554747	ENST00000443071		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-intron	ENST00000554747	ENST00000554747		ChiTaRS3.1			BF952154	BEGAIN	chr14	101005491	-	BEGAIN	chr14	101006851	+
intron-3CDS	ENST00000536769	ENST00000259523		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000536769	ENST00000377970		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000536769	ENST00000524013		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000538617	ENST00000259523		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000538617	ENST00000377970		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000538617	ENST00000524013		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000546120	ENST00000259523		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000546120	ENST00000377970		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000546120	ENST00000524013		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000339647	ENST00000259523		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000339647	ENST00000377970		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000339647	ENST00000524013		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000536661	ENST00000259523		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000536661	ENST00000377970		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
intron-3CDS	ENST00000536661	ENST00000524013		ChiTaRS3.1			BF766594	UBC	chr12	125399121	+	MYC	chr8	128751111	+
5CDS-intron	ENST00000356286	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
5CDS-intron	ENST00000356286	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
5CDS-intron	ENST00000353660	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
5CDS-intron	ENST00000353660	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
5UTR-intron	ENST00000382181	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
5UTR-intron	ENST00000382181	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000475269	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000475269	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000400245	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000400245	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000400247	ENST00000491186		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-intron	ENST00000400247	ENST00000325318		ChiTaRS3.1			BF943534	RBCK1	chr20	398240	-	TCTEX1D2	chr3	196027334	-
intron-3CDS	ENST00000338458	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000338458	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000338458	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000496106	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000496106	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000496106	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000498517	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000498517	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000498517	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000296315	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000296315	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000296315	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000413728	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000413728	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000413728	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000497267	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000497267	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000497267	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000495373	ENST00000263383		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3CDS	ENST00000495373	ENST00000534378		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-5UTR	ENST00000495373	ENST00000531635		ChiTaRS3.1			BG978304	ARHGEF3	chr3	56763430	-	ILVBL	chr19	15233779	+
intron-3UTR	ENST00000278379	ENST00000278379		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000278379	ENST00000395750		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000278379	ENST00000395753		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000278379	ENST00000606205		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000278379	ENST00000479543		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395750	ENST00000278379		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395750	ENST00000395750		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395750	ENST00000395753		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000395750	ENST00000606205		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000395750	ENST00000479543		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395753	ENST00000278379		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395753	ENST00000395750		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000395753	ENST00000395753		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000395753	ENST00000606205		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000395753	ENST00000479543		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000606205	ENST00000278379		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000606205	ENST00000395750		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000606205	ENST00000395753		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000606205	ENST00000606205		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000606205	ENST00000479543		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000479543	ENST00000278379		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000479543	ENST00000395750		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-3UTR	ENST00000479543	ENST00000395753		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000479543	ENST00000606205		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
intron-intron	ENST00000479543	ENST00000479543		ChiTaRS3.1			BF945504	SLC1A2	chr11	35273517	-	SLC1A2	chr11	35274000	-
Frame-shit	ENST00000289371	ENST00000289371		ChiTaRS3.1			AI699584	EIF5B	chr2	99976741	-	EIF5B	chr2	99977671	-
intron-intron	ENST00000370360	ENST00000543307		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000392219		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000541435		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000590686		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000342879		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000588699		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000423817		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-intron	ENST00000370360	ENST00000392218		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000591716		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000370360	ENST00000392217		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-intron	ENST00000534881	ENST00000543307		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000392219		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000541435		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000590686		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000342879		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000588699		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000423817		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-intron	ENST00000534881	ENST00000392218		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000591716		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3UTR	ENST00000534881	ENST00000392217		ChiTaRS3.1			AV692154	GLMN	chr1	92726599	-	FXYD5	chr19	35660726	+
intron-3CDS	ENST00000338961	ENST00000338961		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-intron	ENST00000338961	ENST00000277462		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-5UTR	ENST00000338961	ENST00000483625		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-3CDS	ENST00000277462	ENST00000338961		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-intron	ENST00000277462	ENST00000277462		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-5UTR	ENST00000277462	ENST00000483625		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-3CDS	ENST00000483625	ENST00000338961		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-intron	ENST00000483625	ENST00000277462		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
intron-5UTR	ENST00000483625	ENST00000483625		ChiTaRS3.1			BG342124	PTGES2	chr9	130889802	+	PTGES2	chr9	130889772	-
5CDS-3UTR	ENST00000451137	ENST00000589786		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
5CDS-3UTR	ENST00000451137	ENST00000284006		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
5CDS-intron	ENST00000451137	ENST00000588881		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
5CDS-3UTR	ENST00000451137	ENST00000430256		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
5CDS-intron	ENST00000451137	ENST00000592363		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-3UTR	ENST00000480413	ENST00000589786		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-3UTR	ENST00000480413	ENST00000284006		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-intron	ENST00000480413	ENST00000588881		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-3UTR	ENST00000480413	ENST00000430256		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-intron	ENST00000480413	ENST00000592363		ChiTaRS3.1			BF855984	CYR61	chr1	86047235	-	KCTD15	chr19	34304071	+
3UTR-3UTR	ENST00000272102	ENST00000272102		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000272102	ENST00000540651		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000272102	ENST00000478424		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000272102	ENST00000541182		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000540651	ENST00000272102		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000540651	ENST00000540651		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000540651	ENST00000478424		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000540651	ENST00000541182		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000478424	ENST00000272102		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000478424	ENST00000540651		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000478424	ENST00000478424		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000478424	ENST00000541182		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000541182	ENST00000272102		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000541182	ENST00000540651		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000541182	ENST00000478424		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3UTR	ENST00000541182	ENST00000541182		ChiTaRS3.1			BF893864	ARF1	chr1	228285722	-	ARF1	chr1	228285789	+
3UTR-3CDS	ENST00000318522	ENST00000318522		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
3UTR-3CDS	ENST00000318522	ENST00000402711		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
3UTR-3UTR	ENST00000318522	ENST00000482660		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
3UTR-3UTR	ENST00000318522	ENST00000401738		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
3UTR-intron	ENST00000318522	ENST00000453191		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000402711	ENST00000318522		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000402711	ENST00000402711		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000402711	ENST00000482660		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000402711	ENST00000401738		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-intron	ENST00000402711	ENST00000453191		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000482660	ENST00000318522		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000482660	ENST00000402711		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000482660	ENST00000482660		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000482660	ENST00000401738		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-intron	ENST00000482660	ENST00000453191		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000401738	ENST00000318522		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000401738	ENST00000402711		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000401738	ENST00000482660		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000401738	ENST00000401738		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-intron	ENST00000401738	ENST00000453191		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000453191	ENST00000318522		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3CDS	ENST00000453191	ENST00000402711		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000453191	ENST00000482660		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-3UTR	ENST00000453191	ENST00000401738		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-intron	ENST00000453191	ENST00000453191		ChiTaRS3.1			AK001804	EML4	chr2	42558021	+	EML4	chr2	42396755	+
intron-intron	ENST00000403050	ENST00000356860		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000403050	ENST00000356253		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000403050	ENST00000423588		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000403050	ENST00000464354		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000403050	ENST00000535308		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000445996	ENST00000356860		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000445996	ENST00000356253		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000445996	ENST00000423588		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000445996	ENST00000464354		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000445996	ENST00000535308		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000469407	ENST00000356860		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000469407	ENST00000356253		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000469407	ENST00000423588		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000469407	ENST00000464354		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000469407	ENST00000535308		ChiTaRS3.1			BG220754	PHF14	chr7	11209042	-	CACNA2D1	chr7	81964450	+
intron-intron	ENST00000438423	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000267811	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000452095	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000333725	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000557843	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000560764	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000543579	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000537840	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000343827	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000559710	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000559703	ENST00000390237		ChiTaRS3.1			AK024974	TCF12	chr15	57241576	+	IGKC	chr2	89567993	-
intron-intron	ENST00000321297	ENST00000311172		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000321297	ENST00000409314		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000321297	ENST00000409418		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000321297	ENST00000458644		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000321297	ENST00000409853		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000321297	ENST00000409263		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000311172		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000409314		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000409418		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000458644		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000409853		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000534905	ENST00000409263		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000311172		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000409314		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000409418		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000458644		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000409853		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-intron	ENST00000451353	ENST00000409263		ChiTaRS3.1			AK056634	ATG16L2	chr11	72552569	-	FCHSD2	chr11	72603709	-
intron-5UTR	ENST00000483873	ENST00000435765		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-5UTR	ENST00000483873	ENST00000292644		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-intron	ENST00000483873	ENST00000544811		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-5UTR	ENST00000372146	ENST00000435765		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-5UTR	ENST00000372146	ENST00000292644		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-intron	ENST00000372146	ENST00000544811		ChiTaRS3.1			AU118024	GTF3C4	chr9	135559600	+	PSMC2	chr7	102988089	+
intron-intron	ENST00000367689	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367689	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367689	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367689	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000357444	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000357444	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000357444	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000357444	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000251507	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000251507	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000251507	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000251507	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000325589	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000325589	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000325589	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000325589	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367686	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367686	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367686	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367686	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367687	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367687	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367687	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367687	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000347255	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000347255	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000347255	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000347255	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000489615	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000489615	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000489615	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000489615	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000478442	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000478442	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000478442	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000478442	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000486220	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000486220	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000486220	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000486220	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000392064	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000392064	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000392064	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000392064	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367688	ENST00000382968		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367688	ENST00000433731		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367688	ENST00000333673		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-intron	ENST00000367688	ENST00000505730		ChiTaRS3.1			AW173344	RABGAP1L	chr1	174215060	-	RNF212	chr4	1103113	+
intron-3UTR	ENST00000546474	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000546474	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000546474	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000546474	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000546474	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000546474	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000327359	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000327359	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000327359	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000327359	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000327359	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000327359	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000440513	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000440513	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000440513	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000440513	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000440513	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000440513	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000392557	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000392557	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000392557	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000392557	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000392557	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000392557	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000379937	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000379937	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379937	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379937	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379937	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379937	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000547530	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000547530	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000547530	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000547530	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000547530	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000547530	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000446501	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000446501	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000446501	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000446501	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000446501	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000446501	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000379932	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000379932	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379932	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379932	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379932	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000379932	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000551787	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000551787	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000551787	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000551787	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000551787	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000551787	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000549044	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000549044	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000549044	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000549044	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000549044	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000549044	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000548421	ENST00000323798		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-3UTR	ENST00000548421	ENST00000263276		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000548421	ENST00000541188		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000548421	ENST00000544287		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000548421	ENST00000540532		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
intron-intron	ENST00000548421	ENST00000457974		ChiTaRS3.1			BU601594	BRF1	chr14	105716895	+	GYS1	chr19	49471453	-
3UTR-intron	ENST00000262958	ENST00000238256		ChiTaRS3.1			BG272034	GNA15	chr19	3163662	-	FKBP15	chr9	116025179	-
3UTR-intron	ENST00000262958	ENST00000493847		ChiTaRS3.1			BG272034	GNA15	chr19	3163662	-	FKBP15	chr9	116025179	-
intron-intron	ENST00000561743	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000561743	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000561743	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-3UTR	ENST00000219281	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
3UTR-intron	ENST00000219281	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000539737	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000539737	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000423271	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000423271	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000565662	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000565662	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000536939		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000456907		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-3UTR	ENST00000563149	ENST00000377793		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000539656		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000563149	ENST00000542163		ChiTaRS3.1			AI769184	USB1	chr16	58055280	-	NAA40	chr11	63723006	-
intron-intron	ENST00000371471	ENST00000334955		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000371471	ENST00000445288		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000302342	ENST00000334955		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000302342	ENST00000445288		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000540425	ENST00000334955		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000540425	ENST00000445288		ChiTaRS3.1			AW794844	ZNF217	chr20	52184202	+	RSBN1L	chr7	77346637	-
intron-intron	ENST00000249837	ENST00000262844		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000249837	ENST00000372059		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000249837	ENST00000372057		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000249837	ENST00000496695		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000261517	ENST00000262844		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000261517	ENST00000372059		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000261517	ENST00000372057		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000261517	ENST00000496695		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395896	ENST00000262844		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395896	ENST00000372059		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395896	ENST00000372057		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395896	ENST00000496695		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395898	ENST00000262844		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395898	ENST00000372059		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395898	ENST00000372057		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000395898	ENST00000496695		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000558919	ENST00000262844		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000558919	ENST00000372059		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000558919	ENST00000372057		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000558919	ENST00000496695		ChiTaRS3.1			AI950984	VPS13C	chr15	62149059	+	AMMECR1	chrX	109458811	+
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000504114		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000357505		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000399396		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000446957		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000267068		ChiTaRS3.1			BQ331294	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-3UTR	ENST00000341516	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000341516	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000341516	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000554215	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000554215	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000554215	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000556847	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000556847	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000556847	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000557386	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000557386	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000557386	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000389997	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000389997	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000389997	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000553293	ENST00000341516		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3UTR	ENST00000553293	ENST00000554215		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000556847		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000557386		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000389997		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-intron	ENST00000553293	ENST00000553293		ChiTaRS3.1			AI081794	DCAF5	chr14	69520491	+	DCAF5	chr14	69520518	-
intron-3CDS	ENST00000247087	ENST00000247087		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3CDS	ENST00000247087	ENST00000374011		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-intron	ENST00000247087	ENST00000480033		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3CDS	ENST00000374011	ENST00000247087		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3CDS	ENST00000374011	ENST00000374011		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-intron	ENST00000374011	ENST00000480033		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3CDS	ENST00000480033	ENST00000247087		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3CDS	ENST00000480033	ENST00000374011		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-intron	ENST00000480033	ENST00000480033		ChiTaRS3.1			AI983324	AHDC1	chr1	27876676	-	AHDC1	chr1	27878525	-
intron-3UTR	ENST00000372189	ENST00000534336		ChiTaRS3.1			BF935964	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000372195	ENST00000534336		ChiTaRS3.1			BF935964	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000372190	ENST00000534336		ChiTaRS3.1			BF935964	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000481260	ENST00000534336		ChiTaRS3.1			BF935964	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
3UTR-3CDS	ENST00000462284	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000462284	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000462284	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000462284	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000462284	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000356290	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000356290	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000356290	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000356290	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000356290	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000540827	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000540827	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000540827	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000540827	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000540827	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000258149	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000258149	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000258149	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000258149	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000258149	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000428863	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000428863	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000428863	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000428863	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000428863	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393412	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393412	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393412	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393412	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000393412	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000258148	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000258148	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000258148	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000258148	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000258148	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000544561	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000544561	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000544561	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000544561	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000544561	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393410	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393410	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393410	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393410	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000393410	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393413	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393413	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393413	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000393413	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000393413	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000517852	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000517852	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000517852	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000517852	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000517852	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000545204	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000545204	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000545204	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000545204	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000545204	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000350057	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000350057	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000350057	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000350057	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000350057	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000360430	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000360430	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000360430	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000360430	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000360430	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000299252	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000299252	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000299252	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000299252	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000299252	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000348801	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000348801	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000348801	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000348801	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000348801	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000478070	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000478070	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000478070	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-3CDS	ENST00000478070	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-intron	ENST00000478070	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000544125	ENST00000295688		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000544125	ENST00000368259		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000544125	ENST00000368261		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-3CDS	ENST00000544125	ENST00000472765		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
3UTR-intron	ENST00000544125	ENST00000368256		ChiTaRS3.1			BQ353904	MDM2	chr12	69237587	-	CCT3	chr1	156280987	-
intron-5UTR	ENST00000247833	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000247833	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000247833	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000247833	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000247833	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000247833	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000247833	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000247833	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000247833	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000378815	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000378815	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000378815	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000378815	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000325555	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000325555	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000325555	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000325555	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000483530	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000483530	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000483530	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000483530	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550536	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550536	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550536	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550536	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000362025	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000362025	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000362025	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000362025	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000551641	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000551641	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000551641	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000551641	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000553099	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000553099	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000553099	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000553099	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000247833		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000378815		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000325555		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000483530		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000550536		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-5UTR	ENST00000550847	ENST00000362025		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550847	ENST00000551641		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550847	ENST00000553099		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-intron	ENST00000550847	ENST00000550847		ChiTaRS3.1			BP360754	RAB3IP	chr12	70190913	+	RAB3IP	chr12	70149171	+
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BQ379304	GABRE	chrX	151122867	+	GABRE	chrX	151122671	-
intron-intron	ENST00000263773	ENST00000263773		ChiTaRS3.1			AI885774	FNBP4	chr11	47772844	+	FNBP4	chr11	47752926	+
intron-intron	ENST00000263773	ENST00000534003		ChiTaRS3.1			AI885774	FNBP4	chr11	47772844	+	FNBP4	chr11	47752926	+
intron-intron	ENST00000534003	ENST00000263773		ChiTaRS3.1			AI885774	FNBP4	chr11	47772844	+	FNBP4	chr11	47752926	+
intron-intron	ENST00000534003	ENST00000534003		ChiTaRS3.1			AI885774	FNBP4	chr11	47772844	+	FNBP4	chr11	47752926	+
3UTR-intron	ENST00000340857	ENST00000378611		ChiTaRS3.1			AI886384	H1F0	chr22	38203341	-	C16orf46	chr16	81094678	+
3UTR-3UTR	ENST00000340857	ENST00000299578		ChiTaRS3.1			AI886384	H1F0	chr22	38203341	-	C16orf46	chr16	81094678	+
3UTR-intron	ENST00000340857	ENST00000444657		ChiTaRS3.1			AI886384	H1F0	chr22	38203341	-	C16orf46	chr16	81094678	+
intron-intron	ENST00000465846	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000465846	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000476204	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474040	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000467155	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000480872	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000429755	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000492897	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000487849	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000481995	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000460041	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000474324	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000477144	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000466037	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000491264	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000465846		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000476204		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000474040		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000467155		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000480872		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000429755		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000492897		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000487849		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000481995		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000460041		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000474324		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000477144		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000466037		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000491264		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-intron	ENST00000494420	ENST00000494420		ChiTaRS3.1			BF768034	HOXB-AS3	chr17	46676148	-	HOXB-AS3	chr17	46675879	+
intron-3UTR	ENST00000322927	ENST00000253794		ChiTaRS3.1			AI908624	ZNF335	chr20	44596243	+	VPS25	chr17	40931331	+
intron-3UTR	ENST00000426788	ENST00000253794		ChiTaRS3.1			AI908624	ZNF335	chr20	44596243	+	VPS25	chr17	40931331	+
intron-3UTR	ENST00000494955	ENST00000253794		ChiTaRS3.1			AI908624	ZNF335	chr20	44596243	+	VPS25	chr17	40931331	+
Frame-shit	ENST00000288235	ENST00000288235		ChiTaRS3.1			BP353144	MYO1E	chr15	59487660	-	MYO1E	chr15	59510289	-
5CDS-intron	ENST00000288235	ENST00000558814		ChiTaRS3.1			BP353144	MYO1E	chr15	59487660	-	MYO1E	chr15	59510289	-
intron-3CDS	ENST00000558814	ENST00000288235		ChiTaRS3.1			BP353144	MYO1E	chr15	59487660	-	MYO1E	chr15	59510289	-
intron-intron	ENST00000558814	ENST00000558814		ChiTaRS3.1			BP353144	MYO1E	chr15	59487660	-	MYO1E	chr15	59510289	-
intron-3UTR	ENST00000303221	ENST00000536163		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-intron	ENST00000303221	ENST00000482493		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-3UTR	ENST00000508934	ENST00000536163		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-intron	ENST00000508934	ENST00000482493		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-3UTR	ENST00000514111	ENST00000536163		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-intron	ENST00000514111	ENST00000482493		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-3UTR	ENST00000506190	ENST00000536163		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
intron-intron	ENST00000506190	ENST00000482493		ChiTaRS3.1			BF925974	EMB	chr5	49716161	-	KIAA1147	chr7	141360722	+
Frame-shit	ENST00000420329	ENST00000373566		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000420329	ENST00000373563		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000420329	ENST00000409480		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000420329	ENST00000409547		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000420329	ENST00000409196		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000420329	ENST00000409451		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
5CDS-intron	ENST00000420329	ENST00000482666		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
5CDS-intron	ENST00000420329	ENST00000452341		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000373566		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000373563		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000409480		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000409547		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000409196		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000560098	ENST00000409451		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-intron	ENST00000560098	ENST00000482666		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-intron	ENST00000560098	ENST00000452341		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000373566		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000373563		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000409480		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000409547		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000409196		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
Frame-shit	ENST00000268184	ENST00000409451		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
5CDS-intron	ENST00000268184	ENST00000482666		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
5CDS-intron	ENST00000268184	ENST00000452341		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000373566		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000373563		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000409480		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000409547		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000409196		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-3CDS	ENST00000558619	ENST00000409451		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-intron	ENST00000558619	ENST00000482666		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
intron-intron	ENST00000558619	ENST00000452341		ChiTaRS3.1			BF933094	CRTC3	chr15	91172619	+	GIGYF2	chr2	233655486	-
5CDS-intron	ENST00000415930	ENST00000373583		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373573		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373589		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000415930	ENST00000429103		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000415930	ENST00000373571		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000415930	ENST00000439122		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373560		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373559		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373561		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000415930	ENST00000478743		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373556		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000415930	ENST00000373554		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373583		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373573		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373589		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000356487	ENST00000429103		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000356487	ENST00000373571		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000356487	ENST00000439122		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373560		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373559		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373561		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000356487	ENST00000478743		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373556		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000356487	ENST00000373554		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373583		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373573		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373589		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000586425	ENST00000429103		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000586425	ENST00000373571		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000586425	ENST00000439122		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373560		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373559		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373561		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-5UTR	ENST00000586425	ENST00000478743		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373556		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000586425	ENST00000373554		ChiTaRS3.1			BP302114	GPI	chr19	34857271	+	HDAC8	chrX	71715070	-
5CDS-intron	ENST00000348520	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000348520	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000348520	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000348520	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000348520	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000348520	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000380038	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000380038	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000380038	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000380038	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000380038	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000389744	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000389744	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000389744	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000389744	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000389744	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557575	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557575	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557575	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557575	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557575	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000553286	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000553286	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000553286	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000553286	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000553286	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000347839	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000347839	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000347839	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000347839	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000347839	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000555836	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000555836	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000555836	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000555836	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000555836	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000334553	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000334553	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000334553	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000334553	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000334553	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000246489	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000246489	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000246489	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000246489	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000246489	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557450	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557450	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557450	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000557450	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000557450	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000554280	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000554280	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000554280	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000554280	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000554280	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000452929	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000452929	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000452929	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000452929	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000452929	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000348520		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000380038		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000445352	ENST00000389744		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000445352	ENST00000557575		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000445352	ENST00000553286		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000347839		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000555836		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000334553		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000246489		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000557450		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000554280		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000445352	ENST00000452929		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-3UTR	ENST00000445352	ENST00000445352		ChiTaRS3.1			BQ320374	KLC1	chr14	104145802	-	KLC1	chr14	104151978	-
5CDS-intron	ENST00000215909	ENST00000402696		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
5CDS-intron	ENST00000215909	ENST00000264998		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
5CDS-intron	ENST00000215909	ENST00000475382		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
3UTR-intron	ENST00000489315	ENST00000402696		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
3UTR-intron	ENST00000489315	ENST00000264998		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
3UTR-intron	ENST00000489315	ENST00000475382		ChiTaRS3.1			BG769694	LGALS1	chr22	38074620	+	TF	chr3	133473543	+
intron-intron	ENST00000371839	ENST00000371839		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371839	ENST00000371838		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371839	ENST00000371836		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371839	ENST00000334103		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371839	ENST00000497451		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371838	ENST00000371839		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371838	ENST00000371838		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371838	ENST00000371836		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371838	ENST00000334103		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371838	ENST00000497451		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371836	ENST00000371839		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371836	ENST00000371838		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371836	ENST00000371836		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371836	ENST00000334103		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000371836	ENST00000497451		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000334103	ENST00000371839		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000334103	ENST00000371838		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000334103	ENST00000371836		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000334103	ENST00000334103		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000334103	ENST00000497451		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000497451	ENST00000371839		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000497451	ENST00000371838		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000497451	ENST00000371836		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000497451	ENST00000334103		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
intron-intron	ENST00000497451	ENST00000497451		ChiTaRS3.1			BQ478184	AGBL4	chr1	49224857	+	AGBL4	chr1	49208322	-
3UTR-intron	ENST00000354532	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000354532	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000354532	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000354532	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000599846	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000599846	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000599846	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000599846	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
intron-intron	ENST00000596957	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
intron-intron	ENST00000596957	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
intron-intron	ENST00000596957	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
intron-intron	ENST00000596957	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000347545	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000347545	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000347545	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000347545	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
5CDS-intron	ENST00000378152	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
5CDS-intron	ENST00000378152	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
5CDS-intron	ENST00000378152	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
5CDS-intron	ENST00000378152	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000337665	ENST00000242810		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000337665	ENST00000454652		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000337665	ENST00000476808		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
3UTR-intron	ENST00000337665	ENST00000461813		ChiTaRS3.1			AI862594	ARHGEF1	chr19	42411522	-	KLHL24	chr3	183355233	-
intron-intron	ENST00000530124	ENST00000530124		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000530124	ENST00000257247		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000530124	ENST00000525875		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000530124	ENST00000378024		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000257247	ENST00000530124		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000257247	ENST00000257247		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000257247	ENST00000525875		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000257247	ENST00000378024		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000525875	ENST00000530124		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000525875	ENST00000257247		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000525875	ENST00000525875		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000525875	ENST00000378024		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000378024	ENST00000530124		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000378024	ENST00000257247		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000378024	ENST00000525875		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000378024	ENST00000378024		ChiTaRS3.1			AJ708794	AHNAK	chr11	62285602	-	AHNAK	chr11	62285891	+
intron-intron	ENST00000361641	ENST00000380737		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000361641	ENST00000315985		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000361641	ENST00000523473		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000533373	ENST00000380737		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000533373	ENST00000315985		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000533373	ENST00000523473		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000423085	ENST00000380737		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000423085	ENST00000315985		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-intron	ENST00000423085	ENST00000523473		ChiTaRS3.1			AW170574	TSEN15	chr1	184014902	-	PPP2R2A	chr8	26164337	+
intron-3CDS	ENST00000392446	ENST00000319349		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000392446	ENST00000393664		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000392446	ENST00000538265		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000392446	ENST00000545954		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000392446	ENST00000545089		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000392446	ENST00000591713		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-intron	ENST00000392446	ENST00000586826		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000319349		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000393664		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000538265		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000545954		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000545089		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000302345	ENST00000591713		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-intron	ENST00000302345	ENST00000586826		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000319349		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000393664		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000538265		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000545954		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000545089		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000591773	ENST00000591713		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-intron	ENST00000591773	ENST00000586826		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000319349		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000393664		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000538265		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000545954		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000545089		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-3CDS	ENST00000591732	ENST00000591713		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
5UTR-intron	ENST00000591732	ENST00000586826		ChiTaRS3.1			EU693078	CANT1	chr17	77001454	-	ETV4	chr17	41613849	-
intron-3CDS	ENST00000221347	ENST00000221347		ChiTaRS3.1			BG981694	FCGBP	chr19	40363089	+	FCGBP	chr19	40362752	+
intron-intron	ENST00000221347	ENST00000595713		ChiTaRS3.1			BG981694	FCGBP	chr19	40363089	+	FCGBP	chr19	40362752	+
intron-3CDS	ENST00000595713	ENST00000221347		ChiTaRS3.1			BG981694	FCGBP	chr19	40363089	+	FCGBP	chr19	40362752	+
intron-intron	ENST00000595713	ENST00000595713		ChiTaRS3.1			BG981694	FCGBP	chr19	40363089	+	FCGBP	chr19	40362752	+
3UTR-intron	ENST00000393459	ENST00000275605		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
3UTR-intron	ENST00000393459	ENST00000395471		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
3UTR-intron	ENST00000393459	ENST00000459834		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
3UTR-intron	ENST00000224807	ENST00000275605		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
3UTR-intron	ENST00000224807	ENST00000395471		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
3UTR-intron	ENST00000224807	ENST00000459834		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
5CDS-intron	ENST00000466982	ENST00000275605		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
5CDS-intron	ENST00000466982	ENST00000395471		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
5CDS-intron	ENST00000466982	ENST00000459834		ChiTaRS3.1			AK091504	SFXN3	chr10	102800391	+	PSPH	chr7	56170149	-
intron-intron	ENST00000311862	ENST00000366628		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-3UTR	ENST00000311862	ENST00000366627		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-intron	ENST00000311862	ENST00000490098		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-intron	ENST00000533605	ENST00000366628		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-3UTR	ENST00000533605	ENST00000366627		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-intron	ENST00000533605	ENST00000490098		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-intron	ENST00000525955	ENST00000366628		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-3UTR	ENST00000525955	ENST00000366627		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-intron	ENST00000525955	ENST00000490098		ChiTaRS3.1			BF837614	PRG2	chr11	57177438	+	NTPCR	chr1	233112476	-
intron-3CDS	ENST00000336761	ENST00000370092		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000336761	ENST00000217901		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000336761	ENST00000370093		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000336761	ENST00000427365		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-5UTR	ENST00000336761	ENST00000497043		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000233078	ENST00000370092		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000233078	ENST00000217901		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000233078	ENST00000370093		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000233078	ENST00000427365		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-5UTR	ENST00000233078	ENST00000497043		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000586579	ENST00000370092		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000586579	ENST00000217901		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000586579	ENST00000370093		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3CDS	ENST00000586579	ENST00000427365		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-5UTR	ENST00000586579	ENST00000497043		ChiTaRS3.1			BF902554	DAZAP1	chr19	1420000	+	IDH3G	chrX	153052996	+
intron-3UTR	ENST00000354955	ENST00000354955		ChiTaRS3.1			BG901094	FMOD	chr1	203309871	+	FMOD	chr1	203311445	-
intron-intron	ENST00000354955	ENST00000493296		ChiTaRS3.1			BG901094	FMOD	chr1	203309871	+	FMOD	chr1	203311445	-
intron-3UTR	ENST00000493296	ENST00000354955		ChiTaRS3.1			BG901094	FMOD	chr1	203309871	+	FMOD	chr1	203311445	-
intron-intron	ENST00000493296	ENST00000493296		ChiTaRS3.1			BG901094	FMOD	chr1	203309871	+	FMOD	chr1	203311445	-
intron-5UTR	ENST00000256343	ENST00000347162		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000453940		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000458460		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000259708		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000479388		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000394056		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-5UTR	ENST00000256343	ENST00000394058		ChiTaRS3.1			BG006694	CATSPERB	chr14	92174003	-	KLC4	chr6	43029047	+
intron-intron	ENST00000394773	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000394773	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000278845	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000531557	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000494176	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000529309	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000331886		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000394147		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000551156		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
intron-intron	ENST00000438258	ENST00000549079		ChiTaRS3.1			AI203264	EML3	chr11	62369856	+	DGKA	chr12	56325219	-
5CDS-intron	ENST00000293662	ENST00000361204		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
5CDS-intron	ENST00000293662	ENST00000491541		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
3UTR-intron	ENST00000552963	ENST00000361204		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
3UTR-intron	ENST00000552963	ENST00000491541		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
5UTR-intron	ENST00000552049	ENST00000361204		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
5UTR-intron	ENST00000552049	ENST00000491541		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
intron-intron	ENST00000380039	ENST00000361204		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
intron-intron	ENST00000380039	ENST00000491541		ChiTaRS3.1			BF854404	GRASP	chr12	52404862	-	SREBF2	chr22	42270056	+
intron-3CDS	ENST00000264670	ENST00000264670		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000264670	ENST00000539938		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000264670	ENST00000506139		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-intron	ENST00000264670	ENST00000505264		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000539938	ENST00000264670		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000539938	ENST00000539938		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000539938	ENST00000506139		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-intron	ENST00000539938	ENST00000505264		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000506139	ENST00000264670		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000506139	ENST00000539938		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000506139	ENST00000506139		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-intron	ENST00000506139	ENST00000505264		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000505264	ENST00000264670		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000505264	ENST00000539938		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-3CDS	ENST00000505264	ENST00000506139		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
intron-intron	ENST00000505264	ENST00000505264		ChiTaRS3.1			BQ308344	NSUN2	chr5	6604747	-	NSUN2	chr5	6607404	-
Frame-shit	ENST00000356805	ENST00000170564		ChiTaRS3.1			BF849874	SPTBN1	chr2	54870212	-	GPATCH1	chr19	33616011	+
Frame-shit	ENST00000333896	ENST00000170564		ChiTaRS3.1			BF849874	SPTBN1	chr2	54870212	-	GPATCH1	chr19	33616011	+
In-frame	ENST00000341567	ENST00000341567		ChiTaRS3.1			BU623344	TMEM248	chr7	66418303	-	TMEM248	chr7	66418225	+
3UTR-3CDS	ENST00000515359	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000515359	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000515359	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000308775	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000308775	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000541308	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000541308	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000539901	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000539901	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000545947	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000545947	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-3CDS	ENST00000538711	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
3UTR-intron	ENST00000538711	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525071		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000429869		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-3CDS	ENST00000479935	ENST00000525815		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000265836		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000479935	ENST00000375682		ChiTaRS3.1			AI971584	DAG1	chr3	49572887	-	SLC35F2	chr11	107686639	+
intron-intron	ENST00000372188	ENST00000405409		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000414461		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000449924		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000262829		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000397303		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000359369		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000416721		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-intron	ENST00000372188	ENST00000438146		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000405409		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000414461		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000449924		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000262829		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000397303		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000359369		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000416721		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372187	ENST00000438146		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000405409		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000414461		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000449924		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000262829		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000397303		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000359369		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000416721		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372185	ENST00000438146		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000405409		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000414461		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000449924		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000262829		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000397303		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000359369		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000416721		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
3UTR-intron	ENST00000372181	ENST00000438146		ChiTaRS3.1			BQ338744	FAM213A	chr10	82191973	-	RBFOX2	chr22	36223911	-
intron-3UTR	ENST00000230895	ENST00000230895		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-3UTR	ENST00000230895	ENST00000432074		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-intron	ENST00000230895	ENST00000510546		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-3UTR	ENST00000432074	ENST00000230895		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-3UTR	ENST00000432074	ENST00000432074		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-intron	ENST00000432074	ENST00000510546		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-3UTR	ENST00000510546	ENST00000230895		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-3UTR	ENST00000510546	ENST00000432074		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-intron	ENST00000510546	ENST00000510546		ChiTaRS3.1			AI906374	DAP	chr5	10761181	+	DAP	chr5	10680910	+
intron-intron	ENST00000301634	ENST00000303635		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000439411		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000476163		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000557126		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000473578		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000467404		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000301634	ENST00000476864		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000303635		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000439411		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000476163		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000557126		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000473578		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000467404		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000405273	ENST00000476864		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000303635		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000439411		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000476163		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000557126		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000473578		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000467404		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000588734	ENST00000476864		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000303635		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000439411		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000476163		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000557126		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000473578		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000467404		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590862	ENST00000476864		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000303635		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000439411		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000476163		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000557126		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000473578		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000467404		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000590430	ENST00000476864		ChiTaRS3.1			BG118054	TK1	chr17	76170734	+	CAMTA1	chr1	7100596	+
intron-intron	ENST00000606738	ENST00000606738		ChiTaRS3.1			BI009874	TRABD2B	chr1	48443363	-	TRABD2B	chr1	48443568	+
intron-intron	ENST00000606738	ENST00000435576		ChiTaRS3.1			BI009874	TRABD2B	chr1	48443363	-	TRABD2B	chr1	48443568	+
intron-intron	ENST00000435576	ENST00000606738		ChiTaRS3.1			BI009874	TRABD2B	chr1	48443363	-	TRABD2B	chr1	48443568	+
intron-intron	ENST00000435576	ENST00000435576		ChiTaRS3.1			BI009874	TRABD2B	chr1	48443363	-	TRABD2B	chr1	48443568	+
intron-intron	ENST00000273857	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000273857	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000508498	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000508498	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000502252	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000502252	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000505909	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000505909	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000504584	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000504584	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000515827	ENST00000260983		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
intron-intron	ENST00000515827	ENST00000409111		ChiTaRS3.1			BG429734	CORIN	chr4	47774289	-	HECW2	chr2	197069604	-
Frame-shit	ENST00000295491	ENST00000354185		ChiTaRS3.1			BQ776304	MRPS18C	chr4	84382173	-	DDX21	chr10	70719718	+
Frame-shit	ENST00000507019	ENST00000354185		ChiTaRS3.1			BQ776304	MRPS18C	chr4	84382173	-	DDX21	chr10	70719718	+
In-frame	ENST00000507349	ENST00000354185		ChiTaRS3.1			BQ776304	MRPS18C	chr4	84382173	-	DDX21	chr10	70719718	+
intron-3CDS	ENST00000509571	ENST00000354185		ChiTaRS3.1			BQ776304	MRPS18C	chr4	84382173	-	DDX21	chr10	70719718	+
intron-3CDS	ENST00000354329	ENST00000354329		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000354329	ENST00000529578		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000354329	ENST00000533112		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000354329	ENST00000531253		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000354329	ENST00000527372		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-3CDS	ENST00000529578	ENST00000354329		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000529578	ENST00000529578		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000529578	ENST00000533112		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000529578	ENST00000531253		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000529578	ENST00000527372		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-3CDS	ENST00000533112	ENST00000354329		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000533112	ENST00000529578		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000533112	ENST00000533112		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000533112	ENST00000531253		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000533112	ENST00000527372		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-3CDS	ENST00000531253	ENST00000354329		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000531253	ENST00000529578		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000531253	ENST00000533112		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000531253	ENST00000531253		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000531253	ENST00000527372		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-3CDS	ENST00000527372	ENST00000354329		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000527372	ENST00000529578		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000527372	ENST00000533112		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000527372	ENST00000531253		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-intron	ENST00000527372	ENST00000527372		ChiTaRS3.1			BF895994	MYO18A	chr17	27442455	+	MYO18A	chr17	27447765	-
intron-3CDS	ENST00000384994	ENST00000361417		ChiTaRS3.1			BQ366724	NEAT1	chr11	65192011	-	PHLDB1	chr11	118520848	+
intron-3CDS	ENST00000384994	ENST00000356063		ChiTaRS3.1			BQ366724	NEAT1	chr11	65192011	-	PHLDB1	chr11	118520848	+
intron-3UTR	ENST00000384994	ENST00000534672		ChiTaRS3.1			BQ366724	NEAT1	chr11	65192011	-	PHLDB1	chr11	118520848	+
intron-3UTR	ENST00000384994	ENST00000527898		ChiTaRS3.1			BQ366724	NEAT1	chr11	65192011	-	PHLDB1	chr11	118520848	+
intron-3UTR	ENST00000384994	ENST00000524713		ChiTaRS3.1			BQ366724	NEAT1	chr11	65192011	-	PHLDB1	chr11	118520848	+
5CDS-intron	ENST00000263946	ENST00000174618		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000263946	ENST00000575374		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000263946	ENST00000575394		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000367324	ENST00000174618		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000367324	ENST00000575374		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000367324	ENST00000575394		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000352845	ENST00000174618		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000352845	ENST00000575374		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-intron	ENST00000352845	ENST00000575394		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
intron-intron	ENST00000475988	ENST00000174618		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
intron-intron	ENST00000475988	ENST00000575374		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
intron-intron	ENST00000475988	ENST00000575394		ChiTaRS3.1			BG990024	PKP1	chr1	201291158	+	MNT	chr17	2291894	+
5CDS-5UTR	ENST00000598913	ENST00000598913		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-5UTR	ENST00000598913	ENST00000314471		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-3UTR	ENST00000598913	ENST00000594204		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-3UTR	ENST00000598913	ENST00000596368		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-5UTR	ENST00000314471	ENST00000598913		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-5UTR	ENST00000314471	ENST00000314471		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-3UTR	ENST00000314471	ENST00000594204		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
5CDS-3UTR	ENST00000314471	ENST00000596368		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-5UTR	ENST00000594204	ENST00000598913		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-5UTR	ENST00000594204	ENST00000314471		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-3UTR	ENST00000594204	ENST00000594204		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-3UTR	ENST00000594204	ENST00000596368		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-5UTR	ENST00000596368	ENST00000598913		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-5UTR	ENST00000596368	ENST00000314471		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-3UTR	ENST00000596368	ENST00000594204		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
intron-3UTR	ENST00000596368	ENST00000596368		ChiTaRS3.1			AU119674	SAMD4B	chr19	39868335	+	SAMD4B	chr19	39847456	+
In-frame	ENST00000369317	ENST00000369317		ChiTaRS3.1			AI949744	TXNIP	chr1	145439786	-	TXNIP	chr1	145440773	-
5CDS-intron	ENST00000369317	ENST00000475171		ChiTaRS3.1			AI949744	TXNIP	chr1	145439786	-	TXNIP	chr1	145440773	-
intron-3CDS	ENST00000475171	ENST00000369317		ChiTaRS3.1			AI949744	TXNIP	chr1	145439786	-	TXNIP	chr1	145440773	-
intron-intron	ENST00000475171	ENST00000475171		ChiTaRS3.1			AI949744	TXNIP	chr1	145439786	-	TXNIP	chr1	145440773	-
intron-3CDS	ENST00000378330	ENST00000368738		ChiTaRS3.1			BF904454	ANKRD11	chr16	89484765	+	S100A9	chr1	153330859	+
intron-3CDS	ENST00000301030	ENST00000368738		ChiTaRS3.1			BF904454	ANKRD11	chr16	89484765	+	S100A9	chr1	153330859	+
intron-3CDS	ENST00000563291	ENST00000368738		ChiTaRS3.1			BF904454	ANKRD11	chr16	89484765	+	S100A9	chr1	153330859	+
intron-3CDS	ENST00000567736	ENST00000368738		ChiTaRS3.1			BF904454	ANKRD11	chr16	89484765	+	S100A9	chr1	153330859	+
intron-intron	ENST00000391918	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000391918	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000391918	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000391918	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000391918	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
3UTR-intron	ENST00000291295	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
3UTR-intron	ENST00000291295	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
3UTR-intron	ENST00000291295	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
3UTR-intron	ENST00000291295	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
3UTR-intron	ENST00000291295	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000597743	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000597743	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000597743	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000597743	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000597743	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000477244	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000477244	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000477244	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000477244	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000477244	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000598871	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000598871	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000598871	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000598871	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000598871	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000594523	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000594523	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000594523	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000594523	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000594523	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000599839	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000599839	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000599839	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000599839	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000599839	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000596362	ENST00000360093		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000596362	ENST00000283254		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000596362	ENST00000409101		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000596362	ENST00000540861		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-intron	ENST00000596362	ENST00000465043		ChiTaRS3.1			AI760114	CALM3	chr19	47113677	-	SCN3A	chr2	166043719	+
intron-3CDS	ENST00000525141	ENST00000223368		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-intron	ENST00000525141	ENST00000411832		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-5UTR	ENST00000525141	ENST00000482231		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-3CDS	ENST00000298966	ENST00000223368		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-intron	ENST00000298966	ENST00000411832		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-5UTR	ENST00000298966	ENST00000482231		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-3CDS	ENST00000527149	ENST00000223368		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-intron	ENST00000527149	ENST00000411832		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
intron-5UTR	ENST00000527149	ENST00000482231		ChiTaRS3.1			AK098204	SMCO4	chr11	93212996	-	BCL7B	chr7	72954275	-
5CDS-intron	ENST00000398907	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398907	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398907	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398907	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398907	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398907	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398905	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000288319	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398897	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398911	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398910	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000417133	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000442448	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000453032	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
5CDS-intron	ENST00000398919	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000429727	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000455015		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000336832		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000423850		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000383817		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000430427		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000485493	ENST00000443115		ChiTaRS3.1			BI713036	ERG	chr21	39775430	-	CIDEC	chr3	10048206	+
intron-intron	ENST00000216121	ENST00000251157		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000216121	ENST00000340370		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000216121	ENST00000489185		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000216121	ENST00000404627		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000494966	ENST00000251157		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000494966	ENST00000340370		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000494966	ENST00000489185		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000494966	ENST00000404627		ChiTaRS3.1			AV693284	NIPSNAP1	chr22	29950900	+	DOCK7	chr1	63069830	+
intron-intron	ENST00000306357	ENST00000301831		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000306357	ENST00000420927		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000306357	ENST00000489118		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000306357	ENST00000414606		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000574431	ENST00000301831		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000574431	ENST00000420927		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000574431	ENST00000489118		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000574431	ENST00000414606		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000573373	ENST00000301831		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000573373	ENST00000420927		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000573373	ENST00000489118		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000573373	ENST00000414606		ChiTaRS3.1			BF994904	STX8	chr17	9182390	+	ULK4	chr3	41427043	-
intron-intron	ENST00000434693	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000434693	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000434693	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000434693	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000434693	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000434693	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000396583	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383767	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000445033	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000273139	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000383766	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000452462	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000456853	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000528498		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000528900		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000405097		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000530301		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000343115		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000473799	ENST00000544551		ChiTaRS3.1			BU145394	RBMS3	chr3	30005840	+	RDX	chr5	148877155	-
intron-intron	ENST00000424459	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000424459	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000424459	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000424459	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000424459	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000424459	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000424459	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000514387	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000514387	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000506184	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000506184	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000454432	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000454432	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000511209	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000511209	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000264779	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000264779	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000564349		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000300005		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000357967		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000569729		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000389345		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-5UTR	ENST00000538707	ENST00000563117		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
intron-intron	ENST00000538707	ENST00000568251		ChiTaRS3.1			AK057254	GPBP1	chr5	56539247	+	ERI2	chr16	20817846	+
5CDS-3UTR	ENST00000362042	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000362042	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000362042	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000362042	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000585291	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000585291	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000585291	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000585291	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000357480	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000357480	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000357480	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000357480	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000361665	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000361665	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000361665	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000361665	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
intron-3UTR	ENST00000579481	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
intron-3UTR	ENST00000579481	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
intron-3UTR	ENST00000579481	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
intron-3UTR	ENST00000579481	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000582155	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000582155	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000582155	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000582155	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000583378	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000583378	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000583378	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000583378	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000536222	ENST00000409613		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000536222	ENST00000264059		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000536222	ENST00000409708		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
5CDS-3UTR	ENST00000536222	ENST00000410095		ChiTaRS3.1			BG926274	NFE2L1	chr17	46134726	+	EFHD1	chr2	233546567	+
intron-3UTR	ENST00000440909	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000440909	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000440909	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000440909	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000440909	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000448921	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000448921	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000448921	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000448921	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000448921	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000437397	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000437397	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000437397	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000437397	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000437397	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000355814	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000355814	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000355814	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000355814	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000355814	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000393087	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000393087	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393087	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393087	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393087	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000393088	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000393088	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393088	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393088	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000393088	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000404814	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000404814	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000404814	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000404814	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000404814	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000449399	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000449399	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000449399	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000449399	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000449399	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000402629	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000402629	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000402629	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000402629	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000402629	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000555289	ENST00000400338		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3UTR	ENST00000555289	ENST00000400335		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000555289	ENST00000327813		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000555289	ENST00000407188		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-intron	ENST00000555289	ENST00000479755		ChiTaRS3.1			AI803294	SERPINA1	chr14	94845857	+	KREMEN1	chr22	29538380	-
intron-3CDS	ENST00000373184	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373184	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373184	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373184	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000373187	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373187	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373187	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373187	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000356100	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000356100	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000356100	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000356100	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000373190	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373190	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373190	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373190	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000373193	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373193	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373193	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373193	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000373198	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373198	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373198	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373198	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000373201	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000373201	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373201	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000373201	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-3CDS	ENST00000485499	ENST00000536306		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-5UTR	ENST00000485499	ENST00000543897		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000485499	ENST00000336229		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
intron-intron	ENST00000485499	ENST00000538116		ChiTaRS3.1			AL157434	PTPRT	chr20	41089951	-	ZCCHC8	chr12	122983869	-
In-frame	ENST00000447733	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000447733	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000447733	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000447733	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000447733	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000447733	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
Frame-shit	ENST00000449058	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
Frame-shit	ENST00000449058	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000449058	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000449058	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000449058	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000449058	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000425375	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000425375	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000425375	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000425375	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000425375	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000425375	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000411850	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000411850	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000411850	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000411850	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000411850	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000411850	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000436462	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
In-frame	ENST00000436462	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000436462	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000436462	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000436462	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
5CDS-intron	ENST00000436462	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-3CDS	ENST00000382034	ENST00000447733		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-3CDS	ENST00000382034	ENST00000449058		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-intron	ENST00000382034	ENST00000425375		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-intron	ENST00000382034	ENST00000411850		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-intron	ENST00000382034	ENST00000436462		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
3UTR-intron	ENST00000382034	ENST00000382034		ChiTaRS3.1			BG995254	TOM1	chr22	35743150	+	TOM1	chr22	35719509	+
intron-intron	ENST00000442092	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000266022	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000443081	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000539992	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000441115	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000422955	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
intron-intron	ENST00000421682	ENST00000605917		ChiTaRS3.1			AU118664	RBM6	chr3	50131220	+	CASC15	chr6	21740831	+
3UTR-intron	ENST00000562057	ENST00000391918		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000562057	ENST00000291295		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000562057	ENST00000597743		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000562057	ENST00000477244		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000562057	ENST00000598871		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000562057	ENST00000594523		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000562057	ENST00000599839		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000562057	ENST00000596362		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000344051	ENST00000391918		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000344051	ENST00000291295		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000344051	ENST00000597743		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000344051	ENST00000477244		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000344051	ENST00000598871		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000344051	ENST00000594523		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000344051	ENST00000599839		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000344051	ENST00000596362		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000431806	ENST00000391918		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000431806	ENST00000291295		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000431806	ENST00000597743		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000431806	ENST00000477244		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000431806	ENST00000598871		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-intron	ENST00000431806	ENST00000594523		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000431806	ENST00000599839		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
3UTR-3UTR	ENST00000431806	ENST00000596362		ChiTaRS3.1			BG979974	SPINT1	chr15	41149688	-	CALM3	chr19	47112592	-
intron-3CDS	ENST00000319715	ENST00000261405		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000319715	ENST00000572068		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000319715	ENST00000545906		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-3CDS	ENST00000452655	ENST00000261405		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000452655	ENST00000572068		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000452655	ENST00000545906		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-3CDS	ENST00000381039	ENST00000261405		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000381039	ENST00000572068		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000381039	ENST00000545906		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-3CDS	ENST00000348022	ENST00000261405		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000348022	ENST00000572068		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
intron-intron	ENST00000348022	ENST00000545906		ChiTaRS3.1			BQ016904	RBBP6	chr16	24551469	-	VWF	chr12	6061632	-
Frame-shit	ENST00000254803	ENST00000254803		ChiTaRS3.1			BF834334	UTP3	chr4	71555122	-	UTP3	chr4	71554514	+
intron-intron	ENST00000396992	ENST00000431422		ChiTaRS3.1			AW293694	CFP	chrX	47483681	+	LINC01010	chr6	134816894	+
intron-intron	ENST00000247153	ENST00000431422		ChiTaRS3.1			AW293694	CFP	chrX	47483681	+	LINC01010	chr6	134816894	+
intron-intron	ENST00000377005	ENST00000431422		ChiTaRS3.1			AW293694	CFP	chrX	47483681	+	LINC01010	chr6	134816894	+
intron-intron	ENST00000480317	ENST00000431422		ChiTaRS3.1			AW293694	CFP	chrX	47483681	+	LINC01010	chr6	134816894	+
Frame-shit	ENST00000264932	ENST00000322723		ChiTaRS3.1			BQ349724	SDHA	chr5	225561	-	NCL	chr2	232325555	+
Frame-shit	ENST00000504309	ENST00000322723		ChiTaRS3.1			BQ349724	SDHA	chr5	225561	-	NCL	chr2	232325555	+
intron-3CDS	ENST00000510361	ENST00000322723		ChiTaRS3.1			BQ349724	SDHA	chr5	225561	-	NCL	chr2	232325555	+
intron-3CDS	ENST00000507522	ENST00000322723		ChiTaRS3.1			BQ349724	SDHA	chr5	225561	-	NCL	chr2	232325555	+
intron-intron	ENST00000341567	ENST00000398559		ChiTaRS3.1			BF816914	TMEM248	chr7	66407735	-	TMF1	chr3	69081967	+
intron-intron	ENST00000341567	ENST00000543976		ChiTaRS3.1			BF816914	TMEM248	chr7	66407735	-	TMF1	chr3	69081967	+
intron-intron	ENST00000341567	ENST00000489370		ChiTaRS3.1			BF816914	TMEM248	chr7	66407735	-	TMF1	chr3	69081967	+
intron-3UTR	ENST00000264276	ENST00000264276		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000264276	ENST00000467448		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000264276	ENST00000496244		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000264276	ENST00000457679		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-3UTR	ENST00000467448	ENST00000264276		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000467448	ENST00000467448		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000467448	ENST00000496244		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000467448	ENST00000457679		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-3UTR	ENST00000496244	ENST00000264276		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000496244	ENST00000467448		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000496244	ENST00000496244		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000496244	ENST00000457679		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-3UTR	ENST00000457679	ENST00000264276		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000457679	ENST00000467448		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000457679	ENST00000496244		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
intron-intron	ENST00000457679	ENST00000457679		ChiTaRS3.1			BU680244	ALS2	chr2	202565756	+	ALS2	chr2	202565978	-
3UTR-3CDS	ENST00000534336	ENST00000536378		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-3CDS	ENST00000534336	ENST00000231790		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-3CDS	ENST00000534336	ENST00000458205		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-3CDS	ENST00000534336	ENST00000539477		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-3CDS	ENST00000534336	ENST00000455445		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-3CDS	ENST00000534336	ENST00000435176		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
3UTR-intron	ENST00000534336	ENST00000492474		ChiTaRS3.1			BG945974	MALAT1	chr11	65272105	-	MLH1	chr3	37055982	+
intron-intron	ENST00000442598	ENST00000366966		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000366964		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000366968		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000366965		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000271776		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000366967		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000442598	ENST00000517399		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000366966		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000366964		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000366968		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000366965		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000271776		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000366967		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000371975	ENST00000517399		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000366966		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000366964		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000366968		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000366965		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000271776		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000366967		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000473251	ENST00000517399		ChiTaRS3.1			BF909704	RAD54L	chr1	46719443	-	VASH2	chr1	213127790	-
intron-intron	ENST00000297578	ENST00000263274		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000297578	ENST00000536218		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000297578	ENST00000427526		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000297578	ENST00000599165		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000543107	ENST00000263274		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000543107	ENST00000536218		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000543107	ENST00000427526		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000543107	ENST00000599165		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000523701	ENST00000263274		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000523701	ENST00000536218		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000523701	ENST00000427526		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000523701	ENST00000599165		ChiTaRS3.1			BG612824	SLC25A32	chr8	104412124	-	LIG1	chr19	48626922	-
intron-intron	ENST00000324631	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000324631	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000324631	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000324631	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000324631	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000324631	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377328	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000352115	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000282343	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377331	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000396576	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377319	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377329	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000377315	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000360797		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000580830		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000581345		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000579882		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000585100		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000467034	ENST00000578109		ChiTaRS3.1			AW005394	CACNB2	chr10	18822031	+	PCGF2	chr17	36894605	+
intron-intron	ENST00000519561	ENST00000361732		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000509734		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000354868		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000521422		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000504177		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000354312		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000345306		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000305138		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000282891		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000358030		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000519561	ENST00000380774		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000361732		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000509734		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000354868		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000521422		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000504177		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000354312		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000345306		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000305138		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000282891		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000358030		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000521889	ENST00000380774		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000361732		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000509734		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000354868		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000521422		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000504177		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000354312		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000345306		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000305138		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000282891		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000358030		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000390159	ENST00000380774		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000361732		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000509734		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000354868		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000521422		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000504177		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000354312		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000345306		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000305138		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000282891		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000358030		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000518860	ENST00000380774		ChiTaRS3.1			AK123514	C8orf44	chr8	67580665	+	RAD17	chr5	68666385	+
intron-intron	ENST00000335012	ENST00000374012		ChiTaRS3.1			AK091454	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-intron	ENST00000335012	ENST00000439301		ChiTaRS3.1			AK091454	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-intron	ENST00000335012	ENST00000481202		ChiTaRS3.1			AK091454	C3orf70	chr3	184799861	-	PHF20	chr20	34485505	-
intron-3CDS	ENST00000479481	ENST00000420843		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000479481	ENST00000393505		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000479481	ENST00000360025		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000370992	ENST00000420843		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000370992	ENST00000393505		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000370992	ENST00000360025		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000536831	ENST00000420843		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000536831	ENST00000393505		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000536831	ENST00000360025		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000315563	ENST00000420843		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000315563	ENST00000393505		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000315563	ENST00000360025		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000414986	ENST00000420843		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000414986	ENST00000393505		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
intron-3CDS	ENST00000414986	ENST00000360025		ChiTaRS3.1			BF906634	RRP12	chr10	99145685	-	ARRB1	chr11	74983946	+
3UTR-intron	ENST00000233809	ENST00000357559		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000305586		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000491674		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000491062		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000468861		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000445140		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
3UTR-intron	ENST00000233809	ENST00000480918		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000357559		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000305586		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000491674		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000491062		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000468861		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000445140		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000456764	ENST00000480918		ChiTaRS3.1			AW451314	IGFBP2	chr2	217529091	-	FXR1	chr3	180688173	-
intron-intron	ENST00000432054	ENST00000438552		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000432054	ENST00000381342		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000432054	ENST00000339610		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000393238	ENST00000438552		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000393238	ENST00000381342		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000393238	ENST00000339610		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000426664	ENST00000438552		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000426664	ENST00000381342		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000426664	ENST00000339610		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000329333	ENST00000438552		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000329333	ENST00000381342		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000329333	ENST00000339610		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000515024	ENST00000438552		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000515024	ENST00000381342		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
intron-intron	ENST00000515024	ENST00000339610		ChiTaRS3.1			BF871894	TMCC1	chr3	129512972	-	SNRPB	chr20	2443998	+
3UTR-3UTR	ENST00000382723	ENST00000382723		ChiTaRS3.1			BU624994	MSX1	chr4	4865416	-	MSX1	chr4	4865033	+
3UTR-intron	ENST00000382723	ENST00000468421		ChiTaRS3.1			BU624994	MSX1	chr4	4865416	-	MSX1	chr4	4865033	+
intron-3UTR	ENST00000468421	ENST00000382723		ChiTaRS3.1			BU624994	MSX1	chr4	4865416	-	MSX1	chr4	4865033	+
intron-intron	ENST00000468421	ENST00000468421		ChiTaRS3.1			BU624994	MSX1	chr4	4865416	-	MSX1	chr4	4865033	+
intron-3CDS	ENST00000523698	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
intron-3CDS	ENST00000523698	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
intron-intron	ENST00000523698	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000517876	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000517876	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5CDS-intron	ENST00000517876	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
intron-3CDS	ENST00000521450	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
intron-3CDS	ENST00000521450	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
intron-intron	ENST00000521450	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000403027	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000403027	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5CDS-intron	ENST00000403027	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000524105	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000524105	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-intron	ENST00000524105	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000285896	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000285896	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5CDS-intron	ENST00000285896	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000520671	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000520671	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-intron	ENST00000520671	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000521583	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-3CDS	ENST00000521583	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5UTR-intron	ENST00000521583	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000519404	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
In-frame	ENST00000519404	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
5CDS-intron	ENST00000519404	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
3UTR-3CDS	ENST00000521402	ENST00000340645		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
3UTR-3CDS	ENST00000521402	ENST00000393667		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
3UTR-intron	ENST00000521402	ENST00000472829		ChiTaRS3.1			BF901254	CNOT8	chr5	154244876	+	GOLGB1	chr3	121411199	+
3UTR-3CDS	ENST00000545180	ENST00000263253		ChiTaRS3.1			BF915954	SPHK1	chr17	74383792	-	EP300	chr22	41574706	-
3UTR-3CDS	ENST00000592299	ENST00000263253		ChiTaRS3.1			BF915954	SPHK1	chr17	74383792	-	EP300	chr22	41574706	-
3UTR-3CDS	ENST00000590959	ENST00000263253		ChiTaRS3.1			BF915954	SPHK1	chr17	74383792	-	EP300	chr22	41574706	-
3UTR-3CDS	ENST00000323374	ENST00000263253		ChiTaRS3.1			BF915954	SPHK1	chr17	74383792	-	EP300	chr22	41574706	-
3UTR-3CDS	ENST00000392496	ENST00000263253		ChiTaRS3.1			BF915954	SPHK1	chr17	74383792	-	EP300	chr22	41574706	-
3UTR-3UTR	ENST00000303329	ENST00000303329		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-3UTR	ENST00000303329	ENST00000533983		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-intron	ENST00000303329	ENST00000527771		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-intron	ENST00000303329	ENST00000531595		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-3UTR	ENST00000533983	ENST00000303329		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-3UTR	ENST00000533983	ENST00000533983		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-intron	ENST00000533983	ENST00000527771		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-intron	ENST00000533983	ENST00000531595		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-3UTR	ENST00000527771	ENST00000303329		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-3UTR	ENST00000527771	ENST00000533983		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-intron	ENST00000527771	ENST00000527771		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-intron	ENST00000527771	ENST00000531595		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-3UTR	ENST00000531595	ENST00000303329		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-3UTR	ENST00000531595	ENST00000533983		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-intron	ENST00000531595	ENST00000527771		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
intron-intron	ENST00000531595	ENST00000531595		ChiTaRS3.1			BG403104	ARNT2	chr15	80889807	-	ARNT2	chr15	80889884	+
3UTR-3CDS	ENST00000331595	ENST00000325888		ChiTaRS3.1			AW340724	BGN	chrX	152774754	-	FLNC	chr7	128480617	-
3UTR-3CDS	ENST00000331595	ENST00000346177		ChiTaRS3.1			AW340724	BGN	chrX	152774754	-	FLNC	chr7	128480617	-
3UTR-3CDS	ENST00000480756	ENST00000325888		ChiTaRS3.1			AW340724	BGN	chrX	152774754	-	FLNC	chr7	128480617	-
3UTR-3CDS	ENST00000480756	ENST00000346177		ChiTaRS3.1			AW340724	BGN	chrX	152774754	-	FLNC	chr7	128480617	-
intron-intron	ENST00000405015	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000405015	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000405015	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000431489	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000431489	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000431489	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000354487	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000354487	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000354487	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000263991	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000263991	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000263991	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000405289	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000405289	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000405289	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000496857	ENST00000441611		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000496857	ENST00000370372		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-intron	ENST00000496857	ENST00000361832		ChiTaRS3.1			BF830694	EHBP1	chr2	63259419	-	BLOC1S2	chr10	102041174	-
intron-3UTR	ENST00000401450	ENST00000401450		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-3UTR	ENST00000401450	ENST00000216101		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-intron	ENST00000401450	ENST00000608559		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-3UTR	ENST00000216101	ENST00000401450		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-3UTR	ENST00000216101	ENST00000216101		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-intron	ENST00000216101	ENST00000608559		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
5CDS-3UTR	ENST00000608559	ENST00000401450		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
5CDS-3UTR	ENST00000608559	ENST00000216101		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
5CDS-intron	ENST00000608559	ENST00000608559		ChiTaRS3.1			AI880234	RASL10A	chr22	29709497	+	RASL10A	chr22	29709322	-
intron-intron	ENST00000371657	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371657	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000396059	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371674	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000371677	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000340309	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000420027	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371657		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000396059		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371674		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000371677		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000340309		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000420027		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000415862	ENST00000415862		ChiTaRS3.1			AW807754	UBE2V1	chr20	48709824	-	UBE2V1	chr20	48710193	-
intron-intron	ENST00000447054	ENST00000359520		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000447054	ENST00000561228		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000447054	ENST00000558678		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000265022	ENST00000359520		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000265022	ENST00000561228		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000265022	ENST00000558678		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000344484	ENST00000359520		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000344484	ENST00000561228		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000344484	ENST00000558678		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000382164	ENST00000359520		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000382164	ENST00000561228		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000382164	ENST00000558678		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000544847	ENST00000359520		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000544847	ENST00000561228		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000544847	ENST00000558678		ChiTaRS3.1			BF902754	DGKG	chr3	185882770	-	TECPR2	chr14	102846174	-
intron-intron	ENST00000316803	ENST00000316803		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000316803	ENST00000288616		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000316803	ENST00000351200		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000316803	ENST00000453000		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000288616	ENST00000316803		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000288616	ENST00000288616		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000288616	ENST00000351200		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000288616	ENST00000453000		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000351200	ENST00000316803		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000351200	ENST00000288616		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000351200	ENST00000351200		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
intron-intron	ENST00000351200	ENST00000453000		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
5UTR-intron	ENST00000453000	ENST00000316803		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
5UTR-intron	ENST00000453000	ENST00000288616		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
5UTR-intron	ENST00000453000	ENST00000351200		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
5UTR-intron	ENST00000453000	ENST00000453000		ChiTaRS3.1			BF946534	CABP1	chr12	121093204	-	CABP1	chr12	121084521	+
Frame-shit	ENST00000271640	ENST00000331925		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000271640	ENST00000573283		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000271640	ENST00000575842		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000271640	ENST00000575087		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368962	ENST00000331925		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368962	ENST00000573283		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368962	ENST00000575842		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368962	ENST00000575087		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000368969	ENST00000331925		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000368969	ENST00000573283		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000368969	ENST00000575842		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
Frame-shit	ENST00000368969	ENST00000575087		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368963	ENST00000331925		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368963	ENST00000573283		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368963	ENST00000575842		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000368963	ENST00000575087		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000459773	ENST00000331925		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000459773	ENST00000573283		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000459773	ENST00000575842		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3CDS	ENST00000459773	ENST00000575087		ChiTaRS3.1			BG006984	SETDB1	chr1	150935592	-	ACTG1	chr17	79477861	-
intron-3UTR	ENST00000390237	ENST00000436383		ChiTaRS3.1			AW794654	IGKC	chr2	89156904	+	LINC00707	chr10	6884367	-
intron-intron	ENST00000485752	ENST00000368521		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000362076		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000350592		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000368519		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000483282		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000368518		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000485752	ENST00000368516		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000368521		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000362076		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000350592		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000368519		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000483282		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000368518		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-intron	ENST00000295317	ENST00000368516		ChiTaRS3.1			AW391384	RNF149	chr2	101893937	+	C1orf43	chr1	154182122	-
intron-3UTR	ENST00000295488	ENST00000319622		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000295488	ENST00000565184		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000295488	ENST00000389093		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000295488	ENST00000335181		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000295488	ENST00000568883		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000295488	ENST00000449901		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000295488	ENST00000565154		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000295488	ENST00000568459		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000510985	ENST00000319622		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000510985	ENST00000565184		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000510985	ENST00000389093		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000510985	ENST00000335181		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000510985	ENST00000568883		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000510985	ENST00000449901		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000510985	ENST00000565154		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000510985	ENST00000568459		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000440639	ENST00000319622		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000440639	ENST00000565184		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000440639	ENST00000389093		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000440639	ENST00000335181		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3UTR	ENST00000440639	ENST00000568883		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000440639	ENST00000449901		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000440639	ENST00000565154		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-intron	ENST00000440639	ENST00000568459		ChiTaRS3.1			AW391494	HELQ	chr4	84346472	+	PKM	chr15	72491439	+
intron-3CDS	ENST00000378119	ENST00000405379		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000378119	ENST00000324883		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000378119	ENST00000324907		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-intron	ENST00000378119	ENST00000480736		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000540769	ENST00000405379		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000540769	ENST00000324883		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000540769	ENST00000324907		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-intron	ENST00000540769	ENST00000480736		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000378102	ENST00000405379		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000378102	ENST00000324883		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3CDS	ENST00000378102	ENST00000324907		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-intron	ENST00000378102	ENST00000480736		ChiTaRS3.1			BG013794	C6orf62	chr6	24705832	-	GRHL1	chr2	10104113	-
intron-3UTR	ENST00000561924	ENST00000549982		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000361630		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000552217		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000393128		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000547098		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000548545		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000561924	ENST00000552938		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-3UTR	ENST00000290858	ENST00000549982		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000361630		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000552217		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000393128		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000547098		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000548545		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000290858	ENST00000552938		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-3UTR	ENST00000412916	ENST00000549982		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000361630		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000552217		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000393128		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000547098		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000548545		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000412916	ENST00000552938		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-3UTR	ENST00000568858	ENST00000549982		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000361630		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000552217		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000393128		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000547098		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000548545		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000568858	ENST00000552938		ChiTaRS3.1			BU742854	CBFB	chr16	67067990	-	MRPL42	chr12	93896901	-
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850194	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850194	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850194	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850194	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000344691	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000325074	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000437180	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000300305	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000399240	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000486278	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000494829	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
intron-intron	ENST00000358356	ENST00000368879		ChiTaRS3.1			EU093088	RUNX1	chr21	36259238	-	ZNF687	chr1	151255971	+
5CDS-intron	ENST00000543760	ENST00000295065		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000543760	ENST00000379383		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000543760	ENST00000404530		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000543760	ENST00000490459		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000543760	ENST00000426310		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000543760	ENST00000407893		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000295065		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000379383		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000404530		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000490459		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000426310		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
5CDS-intron	ENST00000366672	ENST00000407893		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000295065		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000379383		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000404530		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000490459		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000426310		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000541865	ENST00000407893		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000295065		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000379383		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000404530		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000490459		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000426310		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
3UTR-intron	ENST00000485438	ENST00000407893		ChiTaRS3.1			BQ335474	GALNT2	chr1	230398716	-	MEMO1	chr2	32217537	-
intron-3CDS	ENST00000323786	ENST00000323786		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000323786	ENST00000393612		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000323786	ENST00000564653		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000393612	ENST00000323786		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000393612	ENST00000393612		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000393612	ENST00000564653		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000564653	ENST00000323786		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000564653	ENST00000393612		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
intron-3CDS	ENST00000564653	ENST00000564653		ChiTaRS3.1			BP378464	COG4	chr16	70515688	-	COG4	chr16	70553636	-
3UTR-3UTR	ENST00000534336	ENST00000553116		ChiTaRS3.1			BF960724	MALAT1	chr11	65268558	-	RAB5B	chr12	56386960	-
3UTR-3UTR	ENST00000534336	ENST00000360299		ChiTaRS3.1			BF960724	MALAT1	chr11	65268558	-	RAB5B	chr12	56386960	-
3UTR-intron	ENST00000534336	ENST00000448789		ChiTaRS3.1			BF960724	MALAT1	chr11	65268558	-	RAB5B	chr12	56386960	-
intron-3CDS	ENST00000368679	ENST00000360319		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000368679	ENST00000422373		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000368679	ENST00000369850		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368679	ENST00000369856		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368679	ENST00000344736		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368679	ENST00000498491		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000368676	ENST00000360319		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000368676	ENST00000422373		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000368676	ENST00000369850		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368676	ENST00000369856		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368676	ENST00000344736		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000368676	ENST00000498491		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000467145	ENST00000360319		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000467145	ENST00000422373		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-3CDS	ENST00000467145	ENST00000369850		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000467145	ENST00000369856		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000467145	ENST00000344736		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000467145	ENST00000498491		ChiTaRS3.1			BF996714	ADAM12	chr10	127730766	+	FLNA	chrX	153590631	-
intron-intron	ENST00000361157	ENST00000046640		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000361157	ENST00000381870		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000361157	ENST00000441220		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000361157	ENST00000414524		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000361157	ENST00000488623		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-3UTR	ENST00000361157	ENST00000399306		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000339145	ENST00000046640		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000339145	ENST00000381870		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000339145	ENST00000441220		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000339145	ENST00000414524		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000339145	ENST00000488623		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-3UTR	ENST00000339145	ENST00000399306		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000362020	ENST00000046640		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000362020	ENST00000381870		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000362020	ENST00000441220		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000362020	ENST00000414524		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000362020	ENST00000488623		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-3UTR	ENST00000362020	ENST00000399306		ChiTaRS3.1			AI954514	IFI6	chr1	27992686	+	CTNS	chr17	3553661	-
intron-intron	ENST00000265109	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000265109	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000512629	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000428746	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000503673	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000515799	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000506376	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000507276	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000448662		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000431808		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000284776		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000437304		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000319471		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000449407		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000355634		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000393528		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000418609		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-intron	ENST00000397449	ENST00000498125		ChiTaRS3.1			BF844204	RAI14	chr5	34661299	-	SORBS2	chr4	186720373	+
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BI850664	KRT4	chr12	53200516	+	KRT4	chr12	53200571	-
intron-3CDS	ENST00000419617	ENST00000419617		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-3CDS	ENST00000419617	ENST00000523601		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-intron	ENST00000419617	ENST00000521768		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-3CDS	ENST00000523601	ENST00000419617		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-3CDS	ENST00000523601	ENST00000523601		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-intron	ENST00000523601	ENST00000521768		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-3CDS	ENST00000521768	ENST00000419617		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-3CDS	ENST00000521768	ENST00000523601		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
intron-intron	ENST00000521768	ENST00000521768		ChiTaRS3.1			AW607434	STK3	chr8	99591943	+	STK3	chr8	99592013	-
In-frame	ENST00000314797	ENST00000378330		ChiTaRS3.1			BG983694	COPG1	chr3	128982762	-	ANKRD11	chr16	89371674	+
In-frame	ENST00000314797	ENST00000301030		ChiTaRS3.1			BG983694	COPG1	chr3	128982762	-	ANKRD11	chr16	89371674	+
In-frame	ENST00000314797	ENST00000563291		ChiTaRS3.1			BG983694	COPG1	chr3	128982762	-	ANKRD11	chr16	89371674	+
5CDS-5UTR	ENST00000314797	ENST00000567736		ChiTaRS3.1			BG983694	COPG1	chr3	128982762	-	ANKRD11	chr16	89371674	+
intron-intron	ENST00000282120	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000282120	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000282120	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000377386	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000377386	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000377386	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000398263	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000398263	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000398263	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409232	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409232	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409232	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409015	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409015	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000409015	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000444342	ENST00000560410		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000444342	ENST00000216802		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000444342	ENST00000471700		ChiTaRS3.1			BG999584	TGOLN2	chr2	85548383	+	PSME2	chr14	24613539	-
intron-intron	ENST00000298585	ENST00000458477		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000298585	ENST00000228307		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000298585	ENST00000424649		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000298585	ENST00000397506		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000298585	ENST00000536957		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000298585	ENST00000267257		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000298585	ENST00000538144		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000471957	ENST00000458477		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000471957	ENST00000228307		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000471957	ENST00000424649		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000471957	ENST00000397506		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000471957	ENST00000536957		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-5UTR	ENST00000471957	ENST00000267257		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
intron-intron	ENST00000471957	ENST00000538144		ChiTaRS3.1			BF798414	ZMYND19	chr9	140484725	+	PXN	chr12	120703530	-
Frame-shit	ENST00000380358	ENST00000256854		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
Frame-shit	ENST00000380358	ENST00000423481		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
Frame-shit	ENST00000358181	ENST00000256854		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
Frame-shit	ENST00000358181	ENST00000423481		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
Frame-shit	ENST00000330494	ENST00000256854		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
Frame-shit	ENST00000330494	ENST00000423481		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
intron-3CDS	ENST00000570758	ENST00000256854		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
intron-3CDS	ENST00000570758	ENST00000423481		ChiTaRS3.1			AW380044	CHD3	chr17	7800535	-	NARS	chr18	55270116	+
intron-intron	ENST00000512913	ENST00000476233		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000512913	ENST00000354667		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000512913	ENST00000356674		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000476233		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000354667		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000265073	ENST00000356674		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000476233		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000354667		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000515355	ENST00000356674		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000476233		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000354667		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000502897	ENST00000356674		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000476233		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000354667		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000504789	ENST00000356674		ChiTaRS3.1			AW373634	SUB1	chr5	32597105	+	HNRNPA2B1	chr7	26237349	-
intron-intron	ENST00000467933	ENST00000467933		ChiTaRS3.1			AK057874	SRGAP2B	chr1	143967007	+	SRGAP2B	chr1	143924155	+
intron-intron	ENST00000376542	ENST00000516892		ChiTaRS3.1			BI055484	ABHD12	chr20	25288669	+	MEG3	chr14	101321300	+
intron-intron	ENST00000339157	ENST00000516892		ChiTaRS3.1			BI055484	ABHD12	chr20	25288669	+	MEG3	chr14	101321300	+
intron-intron	ENST00000481556	ENST00000516892		ChiTaRS3.1			BI055484	ABHD12	chr20	25288669	+	MEG3	chr14	101321300	+
intron-3UTR	ENST00000343245	ENST00000343245		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000343245	ENST00000369070		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000343245	ENST00000369076		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000343245	ENST00000360666		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-5UTR	ENST00000343245	ENST00000475645		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369070	ENST00000343245		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369070	ENST00000369070		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369070	ENST00000369076		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369070	ENST00000360666		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-5UTR	ENST00000369070	ENST00000475645		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369076	ENST00000343245		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369076	ENST00000369070		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369076	ENST00000369076		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000369076	ENST00000360666		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-5UTR	ENST00000369076	ENST00000475645		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000360666	ENST00000343245		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000360666	ENST00000369070		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000360666	ENST00000369076		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000360666	ENST00000360666		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-5UTR	ENST00000360666	ENST00000475645		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000475645	ENST00000343245		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000475645	ENST00000369070		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000475645	ENST00000369076		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000475645	ENST00000360666		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-5UTR	ENST00000475645	ENST00000475645		ChiTaRS3.1			BU689614	ATG5	chr6	106633851	+	ATG5	chr6	106634371	-
intron-3UTR	ENST00000418115	ENST00000418115		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000418115	ENST00000454011		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000418115	ENST00000422781		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000418115	ENST00000265538		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-3UTR	ENST00000454011	ENST00000418115		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000454011	ENST00000454011		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000454011	ENST00000422781		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000454011	ENST00000265538		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-3UTR	ENST00000422781	ENST00000418115		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000422781	ENST00000454011		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000422781	ENST00000422781		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000422781	ENST00000265538		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-3UTR	ENST00000265538	ENST00000418115		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000265538	ENST00000454011		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000265538	ENST00000422781		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-intron	ENST00000265538	ENST00000265538		ChiTaRS3.1			BF996564	RHOA	chr3	49396967	-	RHOA	chr3	49396920	+
intron-3CDS	ENST00000368226	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368226	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368226	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368226	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368226	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368227	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368227	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368227	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368227	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368227	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000532331	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000532331	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000532331	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000532331	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000532331	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368213	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368213	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368213	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368213	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368213	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368210	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368210	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368210	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368210	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368210	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368215	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368215	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368215	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368215	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368215	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368207	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368207	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368207	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000368207	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000368207	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000524481	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000524481	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000524481	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000524481	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000524481	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000525459	ENST00000322954		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000525459	ENST00000539319		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000525459	ENST00000379983		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-3CDS	ENST00000525459	ENST00000560441		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000525459	ENST00000559183		ChiTaRS3.1			BG959344	PTPRK	chr6	128418923	-	UACA	chr15	70961256	+
intron-intron	ENST00000230882	ENST00000511689		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-5UTR	ENST00000230882	ENST00000512507		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000230882	ENST00000304332		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000230882	ENST00000312469		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000230882	ENST00000423969		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000230882	ENST00000510038		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000357703	ENST00000511689		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-5UTR	ENST00000357703	ENST00000512507		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000357703	ENST00000304332		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000357703	ENST00000312469		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000357703	ENST00000423969		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000357703	ENST00000510038		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000537449	ENST00000511689		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-5UTR	ENST00000537449	ENST00000512507		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000537449	ENST00000304332		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000537449	ENST00000312469		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000537449	ENST00000423969		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000537449	ENST00000510038		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000513625	ENST00000511689		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-5UTR	ENST00000513625	ENST00000512507		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000513625	ENST00000304332		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000513625	ENST00000312469		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000513625	ENST00000423969		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-intron	ENST00000513625	ENST00000510038		ChiTaRS3.1			BG015354	GHR	chr5	42465605	+	H2AFY	chr5	134696187	+
intron-3UTR	ENST00000368069	ENST00000368069		ChiTaRS3.1			BG257354	COPA	chr1	160259954	+	COPA	chr1	160259900	-
intron-3UTR	ENST00000368069	ENST00000241704		ChiTaRS3.1			BG257354	COPA	chr1	160259954	+	COPA	chr1	160259900	-
intron-3UTR	ENST00000241704	ENST00000368069		ChiTaRS3.1			BG257354	COPA	chr1	160259954	+	COPA	chr1	160259900	-
intron-3UTR	ENST00000241704	ENST00000241704		ChiTaRS3.1			BG257354	COPA	chr1	160259954	+	COPA	chr1	160259900	-
intron-3UTR	ENST00000320574	ENST00000278175		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000320574	ENST00000534464		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000320574	ENST00000530439		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000320574	ENST00000524948		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000320574	ENST00000528655		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000320574	ENST00000526492		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000320574	ENST00000525063		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000320574	ENST00000528544		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000535270	ENST00000278175		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000535270	ENST00000534464		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000535270	ENST00000530439		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000535270	ENST00000524948		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000535270	ENST00000528655		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000535270	ENST00000526492		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000535270	ENST00000525063		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000535270	ENST00000528544		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000434528	ENST00000278175		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000434528	ENST00000534464		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000434528	ENST00000530439		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000434528	ENST00000524948		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000434528	ENST00000528655		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000434528	ENST00000526492		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000434528	ENST00000525063		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-intron	ENST00000434528	ENST00000528544		ChiTaRS3.1			BG986284	POLE	chr12	133209317	+	ADM	chr11	10328411	+
intron-3UTR	ENST00000403829	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000298687	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000350792	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397858	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000554104	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000555158	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000553503	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397853	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000360463	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000556147	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397856	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397855	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000554143	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397851	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397847	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000298684	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000397844	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-3UTR	ENST00000554277	ENST00000307365		ChiTaRS3.1			BF930964	NDRG2	chr14	21487891	+	DDIT4	chr10	74035204	-
intron-intron	ENST00000369109	ENST00000369109		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000369109	ENST00000360244		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000369109	ENST00000414276		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000369109	ENST00000461320		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000360244	ENST00000369109		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000360244	ENST00000360244		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000360244	ENST00000414276		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000360244	ENST00000461320		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000414276	ENST00000369109		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000414276	ENST00000360244		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000414276	ENST00000414276		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000414276	ENST00000461320		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000461320	ENST00000369109		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-3UTR	ENST00000461320	ENST00000360244		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000461320	ENST00000414276		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-5UTR	ENST00000461320	ENST00000461320		ChiTaRS3.1			BG982654	APH1A	chr1	150238271	-	APH1A	chr1	150238880	-
intron-intron	ENST00000410024	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000410024		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409295		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409091		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000350033		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000410017		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000373608		ChiTaRS3.1			BG757204	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000534336	ENST00000263409		ChiTaRS3.1			BG434574	MALAT1	chr11	65272307	+	LIFR	chr5	38530212	-
3UTR-intron	ENST00000534336	ENST00000453190		ChiTaRS3.1			BG434574	MALAT1	chr11	65272307	+	LIFR	chr5	38530212	-
3UTR-intron	ENST00000534336	ENST00000503088		ChiTaRS3.1			BG434574	MALAT1	chr11	65272307	+	LIFR	chr5	38530212	-
intron-3UTR	ENST00000345843	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000345843	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000345843	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000345843	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000345843	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000345843	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000345843	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000345843	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342295	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342295	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342295	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342295	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342295	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342295	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342295	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342295	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000361572	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000361572	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000361572	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000361572	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000361572	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000361572	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000361572	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000361572	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000348160	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000348160	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000348160	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000348160	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000348160	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000348160	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000348160	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000348160	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000355476	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000355476	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000355476	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000355476	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000355476	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000355476	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000355476	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000355476	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000511401	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000511401	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000511401	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000511401	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000511401	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000511401	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000511401	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000511401	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000507561	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000507561	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000507561	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000507561	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000507561	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000507561	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000507561	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000507561	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000504907	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000504907	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000504907	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000504907	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000504907	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000504907	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000504907	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000504907	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342320	ENST00000503238		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342320	ENST00000358350		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342320	ENST00000537810		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342320	ENST00000264319		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342320	ENST00000507711		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342320	ENST00000514783		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-3UTR	ENST00000342320	ENST00000507873		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000342320	ENST00000506685		ChiTaRS3.1			BG983944	RBPJ	chr4	26366082	-	FRYL	chr4	48500061	-
intron-intron	ENST00000508780	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000508780	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000508780	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000508780	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000508780	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000508780	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000237858	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000237858	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000237858	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000237858	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000237858	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000237858	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000379979	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000379979	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000379979	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000379979	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000379979	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000379979	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000505427	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000505427	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000505427	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000505427	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000505427	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000505427	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000512469	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000512469	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000512469	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000512469	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000512469	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000512469	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000507605	ENST00000508780		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000507605	ENST00000237858		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-3UTR	ENST00000507605	ENST00000379979		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000507605	ENST00000505427		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000507605	ENST00000512469		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-intron	ENST00000507605	ENST00000507605		ChiTaRS3.1			BU674954	GLRX	chr5	95149735	+	GLRX	chr5	95149888	-
intron-5UTR	ENST00000341511	ENST00000397901		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000341511	ENST00000253475		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000341511	ENST00000535997		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000341511	ENST00000550102		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000341511	ENST00000547614		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000265662	ENST00000397901		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000265662	ENST00000253475		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000265662	ENST00000535997		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000265662	ENST00000550102		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000265662	ENST00000547614		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000371605	ENST00000397901		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000371605	ENST00000253475		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000371605	ENST00000535997		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000371605	ENST00000550102		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000371605	ENST00000547614		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000492260	ENST00000397901		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000492260	ENST00000253475		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000492260	ENST00000535997		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000492260	ENST00000550102		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-5UTR	ENST00000492260	ENST00000547614		ChiTaRS3.1			BQ943214	ABCA2	chr9	139918265	-	CHMP1A	chr16	89724013	-
intron-3CDS	ENST00000291577	ENST00000246533		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000291577	ENST00000589146		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000291577	ENST00000587718		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000291577	ENST00000590874		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000291577	ENST00000588815		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000291577	ENST00000588780		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000427803	ENST00000246533		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000427803	ENST00000589146		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000427803	ENST00000587718		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000427803	ENST00000590874		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000427803	ENST00000588815		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000427803	ENST00000588780		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000493883	ENST00000246533		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000493883	ENST00000589146		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000493883	ENST00000587718		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000493883	ENST00000590874		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000493883	ENST00000588815		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000493883	ENST00000588780		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000348499	ENST00000246533		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3CDS	ENST00000348499	ENST00000589146		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000348499	ENST00000587718		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000348499	ENST00000590874		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000348499	ENST00000588815		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000348499	ENST00000588780		ChiTaRS3.1			BG742214	C21orf33	chr21	45557448	+	CAPNS1	chr19	36640734	+
intron-3UTR	ENST00000371657	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371657	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371657	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371657	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000371657	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000396059	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000396059	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000396059	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000396059	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000396059	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371674	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371674	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371674	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371674	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000371674	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371677	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371677	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371677	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000371677	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000371677	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000340309	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000340309	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000340309	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000340309	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000340309	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000420027	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000420027	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000420027	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000420027	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000420027	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000415862	ENST00000395170		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000415862	ENST00000547306		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000415862	ENST00000316299		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3UTR	ENST00000415862	ENST00000548065		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-intron	ENST00000415862	ENST00000552212		ChiTaRS3.1			BU588474	UBE2V1	chr20	48713315	-	PRKAG1	chr12	49396152	-
intron-3CDS	ENST00000265981	ENST00000252242		ChiTaRS3.1			BQ348264	RNF141	chr11	10539369	-	KRT5	chr12	52911919	+
intron-3CDS	ENST00000528665	ENST00000252242		ChiTaRS3.1			BQ348264	RNF141	chr11	10539369	-	KRT5	chr12	52911919	+
intron-intron	ENST00000284486	ENST00000284486		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000284486	ENST00000531564		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000284486	ENST00000534308		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000284486	ENST00000528897		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000531564	ENST00000284486		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000531564	ENST00000531564		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000531564	ENST00000534308		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000531564	ENST00000528897		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000534308	ENST00000284486		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000534308	ENST00000531564		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000534308	ENST00000534308		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000534308	ENST00000528897		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000528897	ENST00000284486		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000528897	ENST00000531564		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000528897	ENST00000534308		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-intron	ENST00000528897	ENST00000528897		ChiTaRS3.1			AW409204	FAM167A	chr8	11311469	-	FAM167A	chr8	11313574	-
intron-3UTR	ENST00000210313	ENST00000210313		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000210313	ENST00000373904		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000210313	ENST00000604848		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-3UTR	ENST00000373904	ENST00000210313		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000373904	ENST00000373904		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000373904	ENST00000604848		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-3UTR	ENST00000604848	ENST00000210313		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000604848	ENST00000373904		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
intron-intron	ENST00000604848	ENST00000604848		ChiTaRS3.1			BU607444	PSMD5	chr9	123578802	+	PSMD5	chr9	123579138	-
3UTR-3CDS	ENST00000318312	ENST00000253408		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
3UTR-intron	ENST00000318312	ENST00000588735		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
3UTR-intron	ENST00000318312	ENST00000435360		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
3UTR-intron	ENST00000318312	ENST00000586793		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
3UTR-5UTR	ENST00000318312	ENST00000591327		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-3CDS	ENST00000537537	ENST00000253408		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000537537	ENST00000588735		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000537537	ENST00000435360		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000537537	ENST00000586793		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-5UTR	ENST00000537537	ENST00000591327		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-3CDS	ENST00000455748	ENST00000253408		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000455748	ENST00000588735		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000455748	ENST00000435360		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000455748	ENST00000586793		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-5UTR	ENST00000455748	ENST00000591327		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-3CDS	ENST00000529766	ENST00000253408		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000529766	ENST00000588735		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000529766	ENST00000435360		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000529766	ENST00000586793		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-5UTR	ENST00000529766	ENST00000591327		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-3CDS	ENST00000393994	ENST00000253408		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000393994	ENST00000588735		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000393994	ENST00000435360		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-intron	ENST00000393994	ENST00000586793		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-5UTR	ENST00000393994	ENST00000591327		ChiTaRS3.1			BQ345014	BBS1	chr11	66300373	+	GFAP	chr17	42992429	+
intron-3CDS	ENST00000398309	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398309	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398309	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376104	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376104	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000418306	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000418306	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000280241	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000280241	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000543673	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000543673	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000376106	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000376106	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000330014	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000330014	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000537455	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000537455	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000524982	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000524982	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000532653	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000532653	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000531015	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000531015	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398301	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398301	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000426717	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000426717	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000404783	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000404783	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000398304	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000398304	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000530800	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000530800	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000398309		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000376104		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000418306		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000280241		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000543673		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000376106		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000330014		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000537455		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000524982		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000532653		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3CDS	ENST00000472545	ENST00000531015		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000398301		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000426717		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000404783		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000398304		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000530800		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-intron	ENST00000472545	ENST00000472545		ChiTaRS3.1			BG004164	DLG2	chr11	83810073	+	DLG2	chr11	83177778	+
intron-3UTR	ENST00000274456	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000274456	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-3UTR	ENST00000513374	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000513374	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-3UTR	ENST00000504771	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000504771	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-3UTR	ENST00000503646	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000503646	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-3UTR	ENST00000504642	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000504642	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-3UTR	ENST00000415806	ENST00000264896		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000415806	ENST00000452464		ChiTaRS3.1			BQ325084	TNFAIP8	chr5	118644051	-	SCARB2	chr4	77081380	-
intron-intron	ENST00000249837	ENST00000338910		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000249837	ENST00000497722		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000261517	ENST00000338910		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000261517	ENST00000497722		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000395896	ENST00000338910		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000395896	ENST00000497722		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000395898	ENST00000338910		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000395898	ENST00000497722		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000558919	ENST00000338910		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000558919	ENST00000497722		ChiTaRS3.1			AW392964	VPS13C	chr15	62205969	+	PSPC1	chr13	20289396	+
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850064	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850064	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850064	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850064	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-3UTR	ENST00000186436	ENST00000186436		ChiTaRS3.1			AW117254	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-intron	ENST00000186436	ENST00000425805		ChiTaRS3.1			AW117254	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-3UTR	ENST00000425805	ENST00000186436		ChiTaRS3.1			AW117254	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-intron	ENST00000425805	ENST00000425805		ChiTaRS3.1			AW117254	TMEM131	chr2	98373171	+	TMEM131	chr2	98373546	-
intron-intron	ENST00000341056	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000341056	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000341056	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000341056	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000341056	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396045	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396045	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396045	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396045	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396045	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000310758	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000310758	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000310758	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000310758	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000310758	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396040	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396040	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396040	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396040	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000396040	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000442504	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000442504	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000442504	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000442504	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000442504	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000448602	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000448602	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000448602	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000448602	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000448602	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000479447	ENST00000382778		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000479447	ENST00000351808		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000479447	ENST00000319980		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000479447	ENST00000537103		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000479447	ENST00000461115		ChiTaRS3.1			BG991634	ELMO1	chr7	37482079	-	IFT88	chr13	21246205	+
intron-intron	ENST00000461783	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000461783	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000461783	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000461783	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000461783	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000461783	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000449545	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000367174	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456144	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000318981	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000360366	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000529824	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000456877	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000528391	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000453514		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000423041		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000504233		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000428308		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000502269		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-intron	ENST00000275246	ENST00000296783		ChiTaRS3.1			BF935734	TIAM2	chr6	155187561	-	PAPD4	chr5	78949058	-
intron-3UTR	ENST00000346329	ENST00000403662		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000346329	ENST00000262825		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000346329	ENST00000406230		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000346329	ENST00000536485		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000301843	ENST00000403662		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000301843	ENST00000262825		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000301843	ENST00000406230		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000301843	ENST00000536485		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000527622	ENST00000403662		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000527622	ENST00000262825		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000527622	ENST00000406230		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000527622	ENST00000536485		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000376561	ENST00000403662		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000376561	ENST00000262825		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000376561	ENST00000406230		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000376561	ENST00000536485		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000538675	ENST00000403662		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000538675	ENST00000262825		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000538675	ENST00000406230		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-intron	ENST00000538675	ENST00000536485		ChiTaRS3.1			BF848074	CTTN	chr11	70255207	+	CSF2RB	chr22	37335414	-
intron-3UTR	ENST00000469230	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000469230	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000469230	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000469230	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000356709	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000356709	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000356709	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000356709	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000352867	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000352867	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000352867	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000352867	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000482536	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000482536	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000482536	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000482536	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000432533	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000432533	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000432533	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
intron-3UTR	ENST00000432533	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000416795	ENST00000374837		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000416795	ENST00000360668		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000416795	ENST00000397709		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
3UTR-3UTR	ENST00000416795	ENST00000476428		ChiTaRS3.1			BG996044	BTN2A2	chr6	26393654	+	MAP1LC3A	chr20	33148083	-
In-frame	ENST00000331825	ENST00000357214		ChiTaRS3.1			AW239284	FTL	chr19	49468839	+	SFPQ	chr1	35657119	-
5CDS-intron	ENST00000331825	ENST00000468598		ChiTaRS3.1			AW239284	FTL	chr19	49468839	+	SFPQ	chr1	35657119	-
intron-intron	ENST00000403829	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000403829	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000403829	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000298687	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298687	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000298687	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000350792	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000350792	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000350792	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397858	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397858	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397858	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554104	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554104	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554104	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000555158	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000555158	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000555158	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000553503	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000553503	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000553503	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397853	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397853	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397853	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000360463	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000360463	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000360463	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000556147	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000556147	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000556147	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397856	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397856	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397856	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397855	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397855	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397855	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554143	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554143	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554143	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397851	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397851	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397851	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397847	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397847	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397847	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000298684	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000298684	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000298684	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397844	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000397844	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000397844	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554277	ENST00000403829		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000298687		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000350792		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397858		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000554104		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000555158		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000553503		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397853		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000360463		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000556147		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397856		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397855		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000554143		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397851		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397847		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000298684		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-3UTR	ENST00000554277	ENST00000397844		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
intron-intron	ENST00000554277	ENST00000554277		ChiTaRS3.1			BG819284	NDRG2	chr14	21485111	+	NDRG2	chr14	21485076	-
5CDS-intron	ENST00000538303	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000538303	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000538303	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000379343	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000379343	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000379343	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000357055	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000357055	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000357055	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000435660	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000435660	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000435660	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000282587	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000282587	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000282587	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000406369	ENST00000336061		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000406369	ENST00000542104		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
5CDS-intron	ENST00000406369	ENST00000540088		ChiTaRS3.1			AK000844	SLC30A6	chr2	32445511	+	RASSF3	chr12	65022252	+
intron-3CDS	ENST00000362003	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000362003	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-3CDS	ENST00000400151	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000400151	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-3CDS	ENST00000482726	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000482726	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-3CDS	ENST00000470161	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000470161	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-3CDS	ENST00000521023	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000521023	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-3CDS	ENST00000505655	ENST00000406961		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000469850		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000405141		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000407230		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000538539		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000288599		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000348332		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
intron-intron	ENST00000505655	ENST00000395856		ChiTaRS3.1			BQ956364	PCGF3	chr4	702588	-	NCOA1	chr2	24930064	+
In-frame	ENST00000373253	ENST00000425354		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373253	ENST00000394426		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373253	ENST00000327550		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373253	ENST00000338561		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373253	ENST00000543726		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
5CDS-5UTR	ENST00000373253	ENST00000543762		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000356090	ENST00000425354		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000356090	ENST00000394426		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000356090	ENST00000327550		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000356090	ENST00000338561		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000356090	ENST00000543726		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
5CDS-5UTR	ENST00000356090	ENST00000543762		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373243	ENST00000425354		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373243	ENST00000394426		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373243	ENST00000327550		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373243	ENST00000338561		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
In-frame	ENST00000373243	ENST00000543726		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
5CDS-5UTR	ENST00000373243	ENST00000543762		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-3CDS	ENST00000459931	ENST00000425354		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-3CDS	ENST00000459931	ENST00000394426		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-3CDS	ENST00000459931	ENST00000327550		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-3CDS	ENST00000459931	ENST00000338561		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-3CDS	ENST00000459931	ENST00000543726		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
intron-5UTR	ENST00000459931	ENST00000543762		ChiTaRS3.1			BF829024	NCDN	chr1	36026713	-	RARG	chr12	53608018	-
5CDS-intron	ENST00000311549	ENST00000530124		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000311549	ENST00000257247		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000311549	ENST00000525875		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000311549	ENST00000378024		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000272274	ENST00000530124		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000272274	ENST00000257247		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000272274	ENST00000525875		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000272274	ENST00000378024		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000319826	ENST00000530124		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000319826	ENST00000257247		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000319826	ENST00000525875		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000319826	ENST00000378024		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000326092	ENST00000530124		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000326092	ENST00000257247		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000326092	ENST00000525875		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
5CDS-intron	ENST00000326092	ENST00000378024		ChiTaRS3.1			AW084964	RPL21	chr13	27830614	-	AHNAK	chr11	62293445	+
intron-3UTR	ENST00000400556	ENST00000400556		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-3UTR	ENST00000400556	ENST00000400555		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-intron	ENST00000400556	ENST00000580583		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-3UTR	ENST00000400555	ENST00000400556		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-3UTR	ENST00000400555	ENST00000400555		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-intron	ENST00000400555	ENST00000580583		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-3UTR	ENST00000580583	ENST00000400556		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-3UTR	ENST00000580583	ENST00000400555		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
intron-intron	ENST00000580583	ENST00000580583		ChiTaRS3.1			BQ774924	PPP4R1	chr18	9547255	+	PPP4R1	chr18	9547460	-
Frame-shit	ENST00000359139	ENST00000359139		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000359139	ENST00000395741		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000359139	ENST00000395744		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000359139	ENST00000216061		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395741	ENST00000359139		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395741	ENST00000395741		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395741	ENST00000395744		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395741	ENST00000216061		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395744	ENST00000359139		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395744	ENST00000395741		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395744	ENST00000395744		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000395744	ENST00000216061		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000216061	ENST00000359139		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000216061	ENST00000395741		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000216061	ENST00000395744		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
Frame-shit	ENST00000216061	ENST00000216061		ChiTaRS3.1			BU684564	PPP6R2	chr22	50873474	-	PPP6R2	chr22	50877072	-
intron-intron	ENST00000534358	ENST00000305208		ChiTaRS3.1			BQ233134	KMT2A	chr11	118367743	+	UGT1A8	chr2	234629401	-
intron-intron	ENST00000389506	ENST00000305208		ChiTaRS3.1			BQ233134	KMT2A	chr11	118367743	+	UGT1A8	chr2	234629401	-
intron-intron	ENST00000354520	ENST00000305208		ChiTaRS3.1			BQ233134	KMT2A	chr11	118367743	+	UGT1A8	chr2	234629401	-
intron-intron	ENST00000420751	ENST00000305208		ChiTaRS3.1			BQ233134	KMT2A	chr11	118367743	+	UGT1A8	chr2	234629401	-
In-frame	ENST00000285848	ENST00000285848		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000285848	ENST00000604262		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000285848	ENST00000412791		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000285848	ENST00000358043		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000604262	ENST00000285848		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000604262	ENST00000604262		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000604262	ENST00000412791		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000604262	ENST00000358043		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000412791	ENST00000285848		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000412791	ENST00000604262		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000412791	ENST00000412791		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000412791	ENST00000358043		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000358043	ENST00000285848		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000358043	ENST00000604262		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000358043	ENST00000412791		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
In-frame	ENST00000358043	ENST00000358043		ChiTaRS3.1			BG763334	OXA1L	chr14	23239488	+	OXA1L	chr14	23237169	+
intron-3UTR	ENST00000337907	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000337907	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000337907	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000337907	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000337907	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000337907	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000377464	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000377464	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000377464	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000377464	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000377464	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000377464	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400907	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400907	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400907	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400907	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400907	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400907	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400908	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400908	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000400908	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400908	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400908	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000400908	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000476556	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000476556	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000476556	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000476556	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000476556	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000476556	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000460659	ENST00000337907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000460659	ENST00000377464		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-3UTR	ENST00000460659	ENST00000400907		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000460659	ENST00000400908		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000460659	ENST00000476556		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000460659	ENST00000460659		ChiTaRS3.1			BG910294	RERE	chr1	8414180	+	RERE	chr1	8414144	-
intron-intron	ENST00000360943	ENST00000371730		ChiTaRS3.1			BU930424	UBE2Z	chr17	47003395	+	EPS15	chr1	52220588	-
intron-intron	ENST00000360943	ENST00000371733		ChiTaRS3.1			BU930424	UBE2Z	chr17	47003395	+	EPS15	chr1	52220588	-
intron-intron	ENST00000360943	ENST00000396122		ChiTaRS3.1			BU930424	UBE2Z	chr17	47003395	+	EPS15	chr1	52220588	-
intron-intron	ENST00000360943	ENST00000493793		ChiTaRS3.1			BU930424	UBE2Z	chr17	47003395	+	EPS15	chr1	52220588	-
5CDS-intron	ENST00000596304	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596304	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596304	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596304	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596304	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000430157	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000430157	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000430157	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000430157	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000430157	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596273	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596273	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596273	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596273	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000596273	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000442744	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000442744	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000442744	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000442744	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000442744	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595683	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595683	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595683	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595683	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595683	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595158	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595158	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595158	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595158	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000595158	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000598780	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000598780	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000598780	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000598780	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000598780	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599551	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599551	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599551	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599551	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599551	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000597451	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000597451	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000597451	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000597451	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000597451	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599595	ENST00000526054		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599595	ENST00000529182		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599595	ENST00000377348		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599595	ENST00000292510		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
5CDS-intron	ENST00000599595	ENST00000526734		ChiTaRS3.1			BG482364	UBA52	chr19	18685733	-	VPS28	chr8	145649367	-
intron-3UTR	ENST00000333274	ENST00000296674		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000333274	ENST00000510210		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000333274	ENST00000512493		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-3UTR	ENST00000333274	ENST00000510019		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000333274	ENST00000507980		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000333274	ENST00000503605		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000333274	ENST00000511844		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-3UTR	ENST00000509503	ENST00000296674		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000509503	ENST00000510210		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000509503	ENST00000512493		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-3UTR	ENST00000509503	ENST00000510019		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000509503	ENST00000507980		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000509503	ENST00000503605		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000509503	ENST00000511844		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-3UTR	ENST00000510359	ENST00000296674		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000510359	ENST00000510210		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000510359	ENST00000512493		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-3UTR	ENST00000510359	ENST00000510019		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000510359	ENST00000507980		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000510359	ENST00000503605		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000510359	ENST00000511844		ChiTaRS3.1			AI982804	EFNA5	chr5	106714041	+	RPS23	chr5	81571295	+
intron-intron	ENST00000546087	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000546087	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000546087	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000538183	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000538183	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000367055	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367055	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000367054	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000367054	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000444946	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000444946	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000337404	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000337404	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000452684	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000452684	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000546087		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-3UTR	ENST00000535372	ENST00000538183		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000367055		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000367054		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000444946		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000337404		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000452684		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
intron-intron	ENST00000535372	ENST00000535372		ChiTaRS3.1			BQ317034	SOD2	chr6	160100964	-	SOD2	chr6	160101726	-
5CDS-intron	ENST00000356093	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000356093	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000398863	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000343067	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000349460	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373800	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000347529	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
5CDS-intron	ENST00000373798	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000373797	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000356093		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000398863		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000343067		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000349460		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000373800		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000347529		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000373798		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000373797		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
3UTR-intron	ENST00000460378	ENST00000460378		ChiTaRS3.1			BQ375294	EPB41	chr1	29438948	+	EPB41	chr1	29438844	-
intron-intron	ENST00000326956	ENST00000326956		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000326956	ENST00000417664		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000326956	ENST00000371320		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000326956	ENST00000371319		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000326956	ENST00000357475		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000417664	ENST00000326956		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000417664	ENST00000417664		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000417664	ENST00000371320		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000417664	ENST00000371319		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000417664	ENST00000357475		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371320	ENST00000326956		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371320	ENST00000417664		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371320	ENST00000371320		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371320	ENST00000371319		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371320	ENST00000357475		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371319	ENST00000326956		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371319	ENST00000417664		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371319	ENST00000371320		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371319	ENST00000371319		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000371319	ENST00000357475		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000357475	ENST00000326956		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000357475	ENST00000417664		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000357475	ENST00000371320		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000357475	ENST00000371319		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000357475	ENST00000357475		ChiTaRS3.1			BU678804	SSBP3	chr1	54824704	-	SSBP3	chr1	54824409	+
intron-intron	ENST00000393958	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393958	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393960	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000355677	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000524491	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000529047	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000393955	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000393958		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000393960		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000355677		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000524491		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000529047		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000393955		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000528224	ENST00000528224		ChiTaRS3.1			BF891034	PC	chr11	66617167	-	PC	chr11	66617080	+
intron-intron	ENST00000356175	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000356175	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000356175	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000358273	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000358273	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000358273	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000431387	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000431387	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000431387	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000581113	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000581113	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000581113	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000417592	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000417592	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000417592	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000444181	ENST00000369250		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-3UTR	ENST00000444181	ENST00000369248		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000444181	ENST00000369246		ChiTaRS3.1			BU609204	NF1	chr17	29599358	+	FAM160B1	chr10	116622571	+
intron-intron	ENST00000305978	ENST00000305978		ChiTaRS3.1			AI801654	SCAND1	chrX	134452612	+	SCAND1	chrX	134452641	-
intron-intron	ENST00000305978	ENST00000373991		ChiTaRS3.1			AI801654	SCAND1	chrX	134452612	+	SCAND1	chrX	134452641	-
intron-intron	ENST00000373991	ENST00000305978		ChiTaRS3.1			AI801654	SCAND1	chrX	134452612	+	SCAND1	chrX	134452641	-
intron-intron	ENST00000373991	ENST00000373991		ChiTaRS3.1			AI801654	SCAND1	chrX	134452612	+	SCAND1	chrX	134452641	-
intron-3UTR	ENST00000495075	ENST00000371873		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000495075	ENST00000450808		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000495075	ENST00000471289		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-3UTR	ENST00000310776	ENST00000371873		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000310776	ENST00000450808		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000310776	ENST00000471289		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-3UTR	ENST00000465056	ENST00000371873		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000465056	ENST00000450808		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000465056	ENST00000471289		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-3UTR	ENST00000478464	ENST00000371873		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000478464	ENST00000450808		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000478464	ENST00000471289		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-3UTR	ENST00000489521	ENST00000371873		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000489521	ENST00000450808		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
intron-intron	ENST00000489521	ENST00000471289		ChiTaRS3.1			AK027204	MRPS22	chr3	139068439	+	CMPK1	chr1	47843702	+
In-frame	ENST00000379802	ENST00000379802		ChiTaRS3.1			AL598124	DSP	chr6	7579665	-	DSP	chr6	7578021	+
In-frame	ENST00000379802	ENST00000418664		ChiTaRS3.1			AL598124	DSP	chr6	7579665	-	DSP	chr6	7578021	+
In-frame	ENST00000418664	ENST00000379802		ChiTaRS3.1			AL598124	DSP	chr6	7579665	-	DSP	chr6	7578021	+
In-frame	ENST00000418664	ENST00000418664		ChiTaRS3.1			AL598124	DSP	chr6	7579665	-	DSP	chr6	7578021	+
intron-intron	ENST00000508628	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000508628	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000508628	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000456466	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000456466	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000456466	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000582970	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000582970	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000582970	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000319921	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000319921	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000319921	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000336301	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000336301	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000336301	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000427003	ENST00000454800		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000427003	ENST00000398341		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
intron-intron	ENST00000427003	ENST00000352133		ChiTaRS3.1			BG978634	RNF213	chr17	78237067	+	SLC37A1	chr21	43974251	-
Frame-shit	ENST00000303577	ENST00000303577		ChiTaRS3.1			BF898264	PCBP1	chr2	70315478	-	PCBP1	chr2	70315318	+
intron-3CDS	ENST00000413953	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000347140	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000358907	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000402412	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000441731	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000403821	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-3CDS	ENST00000546843	ENST00000390237		ChiTaRS3.1			BF873084	R3HDM2	chr12	57674169	+	IGKC	chr2	89156927	+
intron-intron	ENST00000380737	ENST00000380737		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000380737	ENST00000315985		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000380737	ENST00000523473		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000315985	ENST00000380737		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000315985	ENST00000315985		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000315985	ENST00000523473		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000523473	ENST00000380737		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000523473	ENST00000315985		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000523473	ENST00000523473		ChiTaRS3.1			AL041184	PPP2R2A	chr8	25282682	+	PPP2R2A	chr8	25282518	-
intron-intron	ENST00000260810	ENST00000260810		ChiTaRS3.1			BQ025704	TOPBP1	chr3	133334075	+	TOPBP1	chr3	133332900	+
intron-intron	ENST00000260810	ENST00000511439		ChiTaRS3.1			BQ025704	TOPBP1	chr3	133334075	+	TOPBP1	chr3	133332900	+
intron-intron	ENST00000511439	ENST00000260810		ChiTaRS3.1			BQ025704	TOPBP1	chr3	133334075	+	TOPBP1	chr3	133332900	+
intron-intron	ENST00000511439	ENST00000511439		ChiTaRS3.1			BQ025704	TOPBP1	chr3	133334075	+	TOPBP1	chr3	133332900	+
intron-intron	ENST00000346672	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000346672	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000346672	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000346672	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000360962	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000360962	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000360962	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000360962	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527634	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527634	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527634	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527634	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000540737	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000540737	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000540737	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000540737	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000532565	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000532565	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000532565	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000532565	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000525449	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000525449	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000525449	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000525449	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527368	ENST00000240185		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527368	ENST00000439080		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527368	ENST00000315091		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000527368	ENST00000480464		ChiTaRS3.1			AW168514	C11orf80	chr11	66611314	+	TARDBP	chr1	11076759	-
intron-intron	ENST00000225823	ENST00000300006		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000225823	ENST00000566490		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000225823	ENST00000452191		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000225823	ENST00000561692		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000225823	ENST00000565913		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000359872	ENST00000300006		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000359872	ENST00000566490		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000359872	ENST00000452191		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000359872	ENST00000561692		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000359872	ENST00000565913		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000448983	ENST00000300006		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000448983	ENST00000566490		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000448983	ENST00000452191		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000448983	ENST00000561692		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000448983	ENST00000565913		ChiTaRS3.1			BF770354	ASIC2	chr17	32366189	-	C16orf45	chr16	15646313	+
intron-intron	ENST00000378892	ENST00000398399		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000378892	ENST00000383698		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000277010	ENST00000398399		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000277010	ENST00000383698		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000477726	ENST00000398399		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000477726	ENST00000383698		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000461426	ENST00000398399		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
intron-intron	ENST00000461426	ENST00000383698		ChiTaRS3.1			BU754084	SIGMAR1	chr9	34634810	+	VGLL3	chr3	87020419	+
3UTR-3UTR	ENST00000543155	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-intron	ENST00000543155	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000543155	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000543155	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000543155	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000543155	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000543155	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-intron	ENST00000542150	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-3UTR	ENST00000542150	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-intron	ENST00000229251	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000229251	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-intron	ENST00000539735	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000539735	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-intron	ENST00000538410	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
5CDS-3UTR	ENST00000538410	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-intron	ENST00000534947	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534947	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000543155		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-intron	ENST00000534877	ENST00000542150		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000229251		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000539735		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000538410		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000534947		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
3UTR-3UTR	ENST00000534877	ENST00000534877		ChiTaRS3.1			BQ010784	COPS7A	chr12	6840245	-	COPS7A	chr12	6840735	-
intron-intron	ENST00000329251	ENST00000341197		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000329251	ENST00000423191		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000329251	ENST00000372999		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000329251	ENST00000358131		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000329251	ENST00000435864		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000378019	ENST00000341197		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000378019	ENST00000423191		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000378019	ENST00000372999		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000378019	ENST00000358131		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000378019	ENST00000435864		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000532986	ENST00000341197		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000532986	ENST00000423191		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000532986	ENST00000372999		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000532986	ENST00000358131		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-3UTR	ENST00000532986	ENST00000435864		ChiTaRS3.1			BP392614	EEF1G	chr11	62334914	+	TOX2	chr20	42697942	+
intron-intron	ENST00000416782	ENST00000338316		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000416782	ENST00000537121		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000416782	ENST00000513693		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000479005	ENST00000338316		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000479005	ENST00000537121		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000479005	ENST00000513693		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372945	ENST00000338316		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372945	ENST00000537121		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372945	ENST00000513693		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372940	ENST00000338316		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372940	ENST00000537121		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000372940	ENST00000513693		ChiTaRS3.1			BQ014524	MRPS16	chr10	75010662	-	ADCY2	chr1	152009409	-
intron-intron	ENST00000264501	ENST00000422113		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000264501	ENST00000389441		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000455637	ENST00000422113		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000455637	ENST00000389441		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000388738	ENST00000422113		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000388738	ENST00000389441		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000495260	ENST00000422113		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000495260	ENST00000389441		ChiTaRS3.1			BF951394	KIAA1109	chr4	123101194	+	TMEM132D	chr12	130249107	-
intron-intron	ENST00000504926	ENST00000427662		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000504926	ENST00000369774		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000504926	ENST00000355946		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000504926	ENST00000315994		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000504926	ENST00000540321		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000504926	ENST00000538130		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000306315	ENST00000427662		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000306315	ENST00000369774		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000306315	ENST00000355946		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000306315	ENST00000315994		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000306315	ENST00000540321		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000306315	ENST00000538130		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000513985	ENST00000427662		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000513985	ENST00000369774		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-3UTR	ENST00000513985	ENST00000355946		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000513985	ENST00000315994		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000513985	ENST00000540321		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000513985	ENST00000538130		ChiTaRS3.1			BF854364	ZNF608	chr5	123979230	+	SH3PXD2A	chr10	105354871	+
intron-intron	ENST00000448662	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000448662	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000448662	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000448662	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000431808	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000431808	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000431808	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000284776	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000284776	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000284776	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000437304	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000437304	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000437304	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000319471	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000319471	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000319471	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000449407	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000449407	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000449407	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000355634	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000355634	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000355634	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000393528	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000393528	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000393528	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000418609	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000418609	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000418609	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000450793		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000538141		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000380180		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000318007		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000498125	ENST00000437932		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3UTR	ENST00000498125	ENST00000317968		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000542407		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000508216		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000514743		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000380176		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000359265		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000512274		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-intron	ENST00000498125	ENST00000504489		ChiTaRS3.1			BQ941394	SORBS2	chr4	186516508	-	PDLIM5	chr4	95589273	+
intron-3CDS	ENST00000259607	ENST00000285873		ChiTaRS3.1			AI749414	CCL21	chr9	34709139	+	GEMIN5	chr5	154267910	-
intron-3CDS	ENST00000378792	ENST00000285873		ChiTaRS3.1			AI749414	CCL21	chr9	34709139	+	GEMIN5	chr5	154267910	-
intron-intron	ENST00000390548	ENST00000521381		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000521657		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000517643		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000274335		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000396611		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000320694		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000336483		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000390548	ENST00000523872		ChiTaRS3.1			BP390594	IGHG1	chr14	106322062	+	PIK3R1	chr5	67541114	+
intron-intron	ENST00000379051	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379051	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379033	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000298428	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000495368	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000304267	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
5CDS-intron	ENST00000379020	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000379051		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000379033		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000298428		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000495368		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000304267		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000379020		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
intron-intron	ENST00000379017	ENST00000379017		ChiTaRS3.1			BU902594	SEC61A2	chr10	12206309	-	SEC61A2	chr10	12206414	+
In-frame	ENST00000403681	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000541363	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000393577	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000393578	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000425208	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000536545	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
In-frame	ENST00000354636	ENST00000286574		ChiTaRS3.1			EU263619	HMGA2	chr12	66232350	+	WIF1	chr12	65471635	-
3UTR-3UTR	ENST00000258455	ENST00000359314		ChiTaRS3.1			AW028914	MRPS9	chr2	105716275	-	CD2AP	chr6	47594290	-
3UTR-intron	ENST00000258455	ENST00000486693		ChiTaRS3.1			AW028914	MRPS9	chr2	105716275	-	CD2AP	chr6	47594290	-
5CDS-3UTR	ENST00000447750	ENST00000367090		ChiTaRS3.1			BI859574	GDI1	chrX	153670075	+	TMEM181	chr6	159056334	+
intron-3UTR	ENST00000465640	ENST00000367090		ChiTaRS3.1			BI859574	GDI1	chrX	153670075	+	TMEM181	chr6	159056334	+
intron-intron	ENST00000391826	ENST00000391826		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000391826	ENST00000595948		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000391826	ENST00000341114		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000595948	ENST00000391826		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000595948	ENST00000595948		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000595948	ENST00000341114		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000341114	ENST00000391826		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000341114	ENST00000595948		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000341114	ENST00000341114		ChiTaRS3.1			BF819394	IL4I1	chr19	50413271	-	IL4I1	chr19	50413146	+
intron-intron	ENST00000431717	ENST00000355831		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000431717	ENST00000343439		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000431717	ENST00000392782		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000431717	ENST00000392783		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000431717	ENST00000483316		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000430855	ENST00000355831		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000430855	ENST00000343439		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000430855	ENST00000392782		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000430855	ENST00000392783		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000430855	ENST00000483316		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000264848	ENST00000355831		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000264848	ENST00000343439		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000264848	ENST00000392782		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000264848	ENST00000392783		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000264848	ENST00000483316		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000467942	ENST00000355831		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000467942	ENST00000343439		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000467942	ENST00000392782		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000467942	ENST00000392783		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
intron-intron	ENST00000467942	ENST00000483316		ChiTaRS3.1			BF884724	C3orf52	chr3	111812110	-	BAZ2B	chr2	160480684	+
5CDS-intron	ENST00000254108	ENST00000322147		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000254108	ENST00000301873		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000254108	ENST00000530785		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000254108	ENST00000529189		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000254108	ENST00000532932		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000254108	ENST00000536982		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000322147		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000301873		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000530785		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000529189		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000532932		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000380244	ENST00000536982		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000322147		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000301873		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000530785		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000529189		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000532932		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
5CDS-intron	ENST00000568685	ENST00000536982		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000322147		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000301873		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000530785		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000529189		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000532932		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-intron	ENST00000474990	ENST00000536982		ChiTaRS3.1			AW304984	FUS	chr16	31196396	-	LTBP3	chr11	65320336	+
intron-3UTR	ENST00000347162	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000347162	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000347162	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000453940	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000453940	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000453940	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
3UTR-3UTR	ENST00000458460	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
3UTR-3UTR	ENST00000458460	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
3UTR-intron	ENST00000458460	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000259708	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000259708	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000259708	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000479388	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000479388	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000479388	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000394056	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000394056	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000394056	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000394058	ENST00000368985		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-3UTR	ENST00000394058	ENST00000448301		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000394058	ENST00000480760		ChiTaRS3.1			BF858624	KLC4	chr6	43035030	+	CTSS	chr1	150705514	-
intron-intron	ENST00000345317	ENST00000513000		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000509777		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000262992		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000308502		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000508116		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000507861		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000506217		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000345317	ENST00000508084		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000513000		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000509777		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000262992		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000308502		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000508116		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000507861		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000506217		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000539623	ENST00000508084		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000513000		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000509777		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000262992		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000308502		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000508116		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000507861		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000506217		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000489977	ENST00000508084		ChiTaRS3.1			BF895764	SKAP2	chr7	26813470	+	INPP4B	chr4	143233000	+
intron-intron	ENST00000392627	ENST00000392627		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392627	ENST00000342648		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392627	ENST00000481232		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392627	ENST00000392629		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392627	ENST00000582873		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000342648	ENST00000392627		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000342648	ENST00000342648		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000342648	ENST00000481232		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000342648	ENST00000392629		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000342648	ENST00000582873		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000481232	ENST00000392627		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000481232	ENST00000342648		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000481232	ENST00000481232		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000481232	ENST00000392629		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000481232	ENST00000582873		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392629	ENST00000392627		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392629	ENST00000342648		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392629	ENST00000481232		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392629	ENST00000392629		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000392629	ENST00000582873		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000582873	ENST00000392627		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000582873	ENST00000342648		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000582873	ENST00000481232		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000582873	ENST00000392629		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000582873	ENST00000582873		ChiTaRS3.1			BU581664	GPRC5C	chr17	72438164	+	GPRC5C	chr17	72437395	+
intron-intron	ENST00000401432	ENST00000382582		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000355994		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397875		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397866		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397865		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000527041		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000359645		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000528160		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397869		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000354542		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000526111		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000580402		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000579129		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000578193		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397863		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000397860		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000401432	ENST00000487778		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000382582		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000355994		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397875		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397866		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397865		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000527041		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000359645		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000528160		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397869		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000354542		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000526111		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000580402		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000579129		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000578193		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397863		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000397860		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000403714	ENST00000487778		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000382582		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000355994		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397875		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397866		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397865		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000527041		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000359645		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000528160		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397869		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000354542		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000526111		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000580402		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000579129		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000578193		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397863		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000397860		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000402191	ENST00000487778		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000382582		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000355994		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397875		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397866		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397865		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000527041		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000359645		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000528160		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397869		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000354542		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000526111		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000580402		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000579129		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000578193		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397863		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000397860		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-intron	ENST00000405108	ENST00000487778		ChiTaRS3.1			AW515324	EFR3B	chr2	25297317	+	MBP	chr18	74770527	+
intron-5UTR	ENST00000395412	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000395412	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000395412	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000345990	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000345990	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000345990	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000395411	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000395411	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000395411	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000511130	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000511130	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000511130	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000512718	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000512718	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000512718	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000521364	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000521364	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000521364	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000510842	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000510842	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000510842	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000361991	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000361991	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000361991	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000360683	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000360683	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000360683	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000508708	ENST00000526767		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000508708	ENST00000530128		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000508708	ENST00000381057		ChiTaRS3.1			AK129614	CSNK1G3	chr5	122937737	+	HTN3	chr4	70894176	+
intron-3CDS	ENST00000381638	ENST00000381638		ChiTaRS3.1			BF987324	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000381638	ENST00000574474		ChiTaRS3.1			BF987324	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-3CDS	ENST00000574474	ENST00000381638		ChiTaRS3.1			BF987324	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000574474	ENST00000574474		ChiTaRS3.1			BF987324	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
3UTR-3UTR	ENST00000280346	ENST00000280346		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
3UTR-3UTR	ENST00000280346	ENST00000393051		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
3UTR-intron	ENST00000280346	ENST00000537636		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
3UTR-3UTR	ENST00000393051	ENST00000280346		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
3UTR-3UTR	ENST00000393051	ENST00000393051		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
3UTR-intron	ENST00000393051	ENST00000537636		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
intron-3UTR	ENST00000537636	ENST00000280346		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
intron-3UTR	ENST00000537636	ENST00000393051		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
intron-intron	ENST00000537636	ENST00000537636		ChiTaRS3.1			AL079484	DLAT	chr11	111933848	-	DLAT	chr11	111933916	+
intron-3CDS	ENST00000307790	ENST00000337147		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000367075		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000392177		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000307790	ENST00000476189		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000337147		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000367075		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000392177		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000397771	ENST00000476189		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000337147		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000367075		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000392177		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000542393	ENST00000476189		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000337147		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000367075		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000392177		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000478812	ENST00000476189		ChiTaRS3.1			AW177744	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000309983	ENST00000367584		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-3UTR	ENST00000309983	ENST00000427704		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-intron	ENST00000309983	ENST00000305766		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-intron	ENST00000309983	ENST00000440869		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-intron	ENST00000309983	ENST00000367582		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-intron	ENST00000309983	ENST00000397980		ChiTaRS3.1			BU608204	TPMT	chr6	18130276	+	PHACTR2	chr6	144148991	-
intron-3UTR	ENST00000379535	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000426013	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000331268	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000558746	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000559345	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000561171	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-3UTR	ENST00000558502	ENST00000261263		ChiTaRS3.1			BQ430384	MORF4L1	chr15	79190513	+	RAB21	chr12	72179939	+
intron-intron	ENST00000376030	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000167462		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000375227		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000392550		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000578363		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000577200		ChiTaRS3.1			AI970394	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
Frame-shit	ENST00000361654	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000361654	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
Frame-shit	ENST00000545889	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000545889	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
In-frame	ENST00000302528	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000302528	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
Frame-shit	ENST00000358808	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000358808	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
Frame-shit	ENST00000537178	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000537178	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
In-frame	ENST00000540338	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
5CDS-intron	ENST00000540338	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-3CDS	ENST00000536634	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000536634	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-3CDS	ENST00000540539	ENST00000361654		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000545889		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000302528		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000358808		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000537178		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000540338		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000536634		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
intron-intron	ENST00000540539	ENST00000540539		ChiTaRS3.1			BF997764	CLIP1	chr12	122845504	-	CLIP1	chr12	122848654	-
3UTR-intron	ENST00000270792	ENST00000268182		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
3UTR-intron	ENST00000270792	ENST00000560738		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
3UTR-intron	ENST00000270792	ENST00000560020		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
3UTR-intron	ENST00000319041	ENST00000268182		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
3UTR-intron	ENST00000319041	ENST00000560738		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
3UTR-intron	ENST00000319041	ENST00000560020		ChiTaRS3.1			AI991234	SH3BGRL3	chr1	26607762	-	IQGAP1	chr15	90934358	-
intron-intron	ENST00000373913	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373913	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373913	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373913	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373913	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373913	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000401952	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000373907	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000339266	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000475894	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000373913		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000401952		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000373907		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000339266		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000475894		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-intron	ENST00000340491	ENST00000340491		ChiTaRS3.1			AK024674	DLGAP4	chr20	35094901	+	DLGAP4	chr20	35091761	+
intron-3CDS	ENST00000361204	ENST00000276449		ChiTaRS3.1			AV706484	SREBF2	chr22	42306863	-	STAR	chr8	38005760	-
intron-3CDS	ENST00000491541	ENST00000276449		ChiTaRS3.1			AV706484	SREBF2	chr22	42306863	-	STAR	chr8	38005760	-
3UTR-3UTR	ENST00000403681	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
3UTR-intron	ENST00000403681	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000541363	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000541363	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000393577	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393577	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000393578	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000393578	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000425208	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000425208	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000536545	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000536545	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000354636	ENST00000403681		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000541363		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000393577		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000393578		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000425208		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000536545		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-intron	ENST00000354636	ENST00000354636		ChiTaRS3.1			BG281704	HMGA2	chr12	66359812	-	HMGA2	chr12	66359879	+
intron-3UTR	ENST00000442092	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000442092	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000442092	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000442092	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000442092	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000442092	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000266022	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000443081	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000539992	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000441115	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000422955	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000372572		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000372573		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000361346		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000361776		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000545068		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-3UTR	ENST00000421682	ENST00000372571		ChiTaRS3.1			BF795594	RBM6	chr3	50066920	+	FOXJ3	chr1	42644224	-
intron-intron	ENST00000223864	ENST00000223864		ChiTaRS3.1			BF996604	PLGRKT	chr9	5438260	+	PLGRKT	chr9	5438408	-
intron-intron	ENST00000223864	ENST00000482696		ChiTaRS3.1			BF996604	PLGRKT	chr9	5438260	+	PLGRKT	chr9	5438408	-
intron-intron	ENST00000482696	ENST00000223864		ChiTaRS3.1			BF996604	PLGRKT	chr9	5438260	+	PLGRKT	chr9	5438408	-
intron-intron	ENST00000482696	ENST00000482696		ChiTaRS3.1			BF996604	PLGRKT	chr9	5438260	+	PLGRKT	chr9	5438408	-
intron-3UTR	ENST00000313899	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000313899	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000313899	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000353341	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000353341	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000353341	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000543098	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000543098	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000543098	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000352301	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000352301	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000352301	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000508119	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000508119	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000508119	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000541060	ENST00000453321		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-3UTR	ENST00000541060	ENST00000409623		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000541060	ENST00000425545		ChiTaRS3.1			BG988244	HNRNPD	chr4	83275470	+	TMEM67	chr8	94828925	+
intron-intron	ENST00000392455	ENST00000421745		ChiTaRS3.1			BF818564	CCDC50	chr3	191089056	-	BIRC6	chr2	32731813	-
intron-intron	ENST00000392456	ENST00000421745		ChiTaRS3.1			BF818564	CCDC50	chr3	191089056	-	BIRC6	chr2	32731813	-
intron-intron	ENST00000595437	ENST00000595437		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000595437	ENST00000376586		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000595437	ENST00000319562		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000595437	ENST00000376581		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000595437	ENST00000593990		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376586	ENST00000595437		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376586	ENST00000376586		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376586	ENST00000319562		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376586	ENST00000376581		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376586	ENST00000593990		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000319562	ENST00000595437		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000319562	ENST00000376586		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000319562	ENST00000319562		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000319562	ENST00000376581		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000319562	ENST00000593990		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376581	ENST00000595437		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376581	ENST00000376586		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376581	ENST00000319562		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376581	ENST00000376581		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000376581	ENST00000593990		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000593990	ENST00000595437		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000593990	ENST00000376586		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000593990	ENST00000319562		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000593990	ENST00000376581		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
intron-intron	ENST00000593990	ENST00000593990		ChiTaRS3.1			BF886774	FARP1	chr13	98895282	-	FARP1	chr13	98894950	+
3UTR-intron	ENST00000335221	ENST00000378004		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000335221	ENST00000274498		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000335221	ENST00000486650		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000321892	ENST00000378004		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000321892	ENST00000274498		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000321892	ENST00000486650		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000306378	ENST00000378004		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000306378	ENST00000274498		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
3UTR-intron	ENST00000306378	ENST00000486650		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000424123	ENST00000378004		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000424123	ENST00000274498		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000424123	ENST00000486650		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000577770	ENST00000378004		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000577770	ENST00000274498		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
intron-intron	ENST00000577770	ENST00000486650		ChiTaRS3.1			AW609214	BPTF	chr17	65978987	-	ARHGAP26	chr5	142545012	-
Frame-shit	ENST00000302418	ENST00000389048		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
5CDS-intron	ENST00000302418	ENST00000431873		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
5CDS-intron	ENST00000302418	ENST00000498037		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
intron-3CDS	ENST00000493889	ENST00000389048		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
intron-intron	ENST00000493889	ENST00000431873		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
intron-intron	ENST00000493889	ENST00000498037		ChiTaRS3.1			AB462413	KIF5B	chr10	32306071	-	ALK	chr2	29446395	-
intron-3CDS	ENST00000265056	ENST00000265056		ChiTaRS3.1			BG980024	MCM2	chr3	127326045	-	MCM2	chr3	127327717	-
intron-intron	ENST00000265056	ENST00000468414		ChiTaRS3.1			BG980024	MCM2	chr3	127326045	-	MCM2	chr3	127327717	-
intron-3CDS	ENST00000468414	ENST00000265056		ChiTaRS3.1			BG980024	MCM2	chr3	127326045	-	MCM2	chr3	127327717	-
intron-intron	ENST00000468414	ENST00000468414		ChiTaRS3.1			BG980024	MCM2	chr3	127326045	-	MCM2	chr3	127327717	-
intron-intron	ENST00000487159	ENST00000487159		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000487159	ENST00000327628		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000487159	ENST00000449246		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-3UTR	ENST00000487159	ENST00000341421		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000487159	ENST00000396175		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000327628	ENST00000487159		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000327628	ENST00000327628		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000327628	ENST00000449246		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-3UTR	ENST00000327628	ENST00000341421		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000327628	ENST00000396175		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000449246	ENST00000487159		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000449246	ENST00000327628		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000449246	ENST00000449246		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-3UTR	ENST00000449246	ENST00000341421		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000449246	ENST00000396175		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
3UTR-intron	ENST00000341421	ENST00000487159		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
3UTR-intron	ENST00000341421	ENST00000327628		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
3UTR-intron	ENST00000341421	ENST00000449246		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
3UTR-3UTR	ENST00000341421	ENST00000341421		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
3UTR-intron	ENST00000341421	ENST00000396175		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000396175	ENST00000487159		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000396175	ENST00000327628		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000396175	ENST00000449246		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-3UTR	ENST00000396175	ENST00000341421		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
intron-intron	ENST00000396175	ENST00000396175		ChiTaRS3.1			BG290364	TRAK1	chr3	42253979	-	TRAK1	chr3	42254016	+
In-frame	ENST00000053867	ENST00000053867		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
In-frame	ENST00000053867	ENST00000589265		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
5CDS-3UTR	ENST00000053867	ENST00000589923		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
In-frame	ENST00000589265	ENST00000053867		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
In-frame	ENST00000589265	ENST00000589265		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
5CDS-3UTR	ENST00000589265	ENST00000589923		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
3UTR-3CDS	ENST00000589923	ENST00000053867		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
3UTR-3CDS	ENST00000589923	ENST00000589265		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
3UTR-3UTR	ENST00000589923	ENST00000589923		ChiTaRS3.1			BF869014	GRN	chr17	42429037	-	GRN	chr17	42428929	+
intron-intron	ENST00000263816	ENST00000328252		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000534838		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000263816	ENST00000483254		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000328252		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000534838		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000443831	ENST00000483254		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000328252		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000534838		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-intron	ENST00000461418	ENST00000483254		ChiTaRS3.1			BF991744	LRP2	chr2	169983795	+	PAPPA	chr9	118988097	+
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			BF927334	EEF2	chr19	3976340	-	EEF2	chr19	3984194	-
intron-5UTR	ENST00000309311	ENST00000600720		ChiTaRS3.1			BF927334	EEF2	chr19	3976340	-	EEF2	chr19	3984194	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			BF927334	EEF2	chr19	3976340	-	EEF2	chr19	3984194	-
intron-5UTR	ENST00000600720	ENST00000600720		ChiTaRS3.1			BF927334	EEF2	chr19	3976340	-	EEF2	chr19	3984194	-
3UTR-intron	ENST00000349995	ENST00000264595		ChiTaRS3.1			AI904994	COG3	chr13	46109519	+	AGA	chr4	178357154	-
3UTR-intron	ENST00000349995	ENST00000506853		ChiTaRS3.1			AI904994	COG3	chr13	46109519	+	AGA	chr4	178357154	-
intron-intron	ENST00000465942	ENST00000264595		ChiTaRS3.1			AI904994	COG3	chr13	46109519	+	AGA	chr4	178357154	-
intron-intron	ENST00000465942	ENST00000506853		ChiTaRS3.1			AI904994	COG3	chr13	46109519	+	AGA	chr4	178357154	-
intron-3CDS	ENST00000367142	ENST00000367142		ChiTaRS3.1			BQ774014	NUCKS1	chr1	205689673	+	NUCKS1	chr1	205696907	-
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			BQ774014	NUCKS1	chr1	205689673	+	NUCKS1	chr1	205696907	-
intron-3CDS	ENST00000464938	ENST00000367142		ChiTaRS3.1			BQ774014	NUCKS1	chr1	205689673	+	NUCKS1	chr1	205696907	-
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			BQ774014	NUCKS1	chr1	205689673	+	NUCKS1	chr1	205696907	-
intron-intron	ENST00000233143	ENST00000392411		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000321280		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000428708		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000575712		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000575245		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000435091		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000321300		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000573894		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000233143	ENST00000416299		ChiTaRS3.1			BF845924	TMSB10	chr2	85133513	-	BAIAP2	chr17	79017689	+
intron-intron	ENST00000255409	ENST00000394048		ChiTaRS3.1			BF898044	CHI3L1	chr1	203155390	+	ESYT1	chr12	56531701	-
intron-intron	ENST00000255409	ENST00000267113		ChiTaRS3.1			BF898044	CHI3L1	chr1	203155390	+	ESYT1	chr12	56531701	-
intron-intron	ENST00000255409	ENST00000541590		ChiTaRS3.1			BF898044	CHI3L1	chr1	203155390	+	ESYT1	chr12	56531701	-
intron-intron	ENST00000255409	ENST00000550878		ChiTaRS3.1			BF898044	CHI3L1	chr1	203155390	+	ESYT1	chr12	56531701	-
intron-intron	ENST00000360822	ENST00000316902		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360822	ENST00000469263		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360822	ENST00000453702		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360822	ENST00000529705		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360822	ENST00000422941		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360822	ENST00000532568		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000316902		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000469263		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000453702		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000529705		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000422941		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000359309	ENST00000532568		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000316902		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000469263		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000453702		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000529705		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000422941		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000349780	ENST00000532568		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000316902		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000469263		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000453702		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000529705		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000422941		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000360190	ENST00000532568		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000316902		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000469263		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000453702		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000529705		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000422941		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
intron-intron	ENST00000480467	ENST00000532568		ChiTaRS3.1			BF926634	CDK5RAP2	chr9	123170702	-	SLC7A8	chr14	23637276	+
Frame-shit	ENST00000521578	ENST00000521578		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000521578	ENST00000520105		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000521578	ENST00000349124		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000521578	ENST00000329397		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000521578	ENST00000524028		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000520105	ENST00000521578		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000520105	ENST00000520105		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000520105	ENST00000349124		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000520105	ENST00000329397		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000520105	ENST00000524028		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000349124	ENST00000521578		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000349124	ENST00000520105		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000349124	ENST00000349124		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000349124	ENST00000329397		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000349124	ENST00000524028		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000329397	ENST00000521578		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000329397	ENST00000520105		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000329397	ENST00000349124		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000329397	ENST00000329397		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000329397	ENST00000524028		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000524028	ENST00000521578		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000524028	ENST00000520105		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000524028	ENST00000349124		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000524028	ENST00000329397		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
Frame-shit	ENST00000524028	ENST00000524028		ChiTaRS3.1			BF988034	PTP4A3	chr8	142432381	-	PTP4A3	chr8	142441122	-
intron-intron	ENST00000439293	ENST00000546087		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-3UTR	ENST00000439293	ENST00000538183		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000367055		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000367054		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000444946		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000337404		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000452684		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000439293	ENST00000535372		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000546087		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-3UTR	ENST00000425156	ENST00000538183		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000367055		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000367054		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000444946		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000337404		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000452684		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000425156	ENST00000535372		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000546087		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-3UTR	ENST00000452768	ENST00000538183		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000367055		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000367054		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000444946		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000337404		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000452684		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000452768	ENST00000535372		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000546087		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-3UTR	ENST00000420850	ENST00000538183		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000367055		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000367054		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000444946		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000337404		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000452684		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
intron-intron	ENST00000420850	ENST00000535372		ChiTaRS3.1			AK093984	ENTPD3-AS1	chr3	40487519	-	SOD2	chr6	160100853	-
5CDS-intron	ENST00000360184	ENST00000381792		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
5CDS-intron	ENST00000360184	ENST00000346753		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
5CDS-intron	ENST00000360184	ENST00000406725		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
5CDS-intron	ENST00000360184	ENST00000406856		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
5CDS-intron	ENST00000360184	ENST00000442782		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-intron	ENST00000556791	ENST00000381792		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-intron	ENST00000556791	ENST00000346753		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-intron	ENST00000556791	ENST00000406725		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-intron	ENST00000556791	ENST00000406856		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-intron	ENST00000556791	ENST00000442782		ChiTaRS3.1			BF951674	DYNC1H1	chr14	102510374	+	TMPRSS6	chr22	37468135	+
intron-3UTR	ENST00000529202	ENST00000303562		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000554617		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000556324		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000535987		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000555242		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000555686		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000529202	ENST00000555347		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-3UTR	ENST00000263182	ENST00000303562		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000554617		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000556324		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000535987		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000555242		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000555686		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000263182	ENST00000555347		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-3UTR	ENST00000528583	ENST00000303562		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000554617		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000556324		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000535987		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000555242		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000555686		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000528583	ENST00000555347		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-3UTR	ENST00000525090	ENST00000303562		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000554617		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000556324		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000535987		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000555242		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000555686		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000525090	ENST00000555347		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-3UTR	ENST00000527505	ENST00000303562		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000554617		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000556324		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000535987		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000555242		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000555686		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
intron-intron	ENST00000527505	ENST00000555347		ChiTaRS3.1			AW798404	BBOX1	chr11	27089771	-	FOS	chr14	75748724	-
5CDS-intron	ENST00000254108	ENST00000252699		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000254108	ENST00000424234		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000254108	ENST00000390009		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000254108	ENST00000497637		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000380244	ENST00000252699		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000380244	ENST00000424234		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000380244	ENST00000390009		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000380244	ENST00000497637		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000568685	ENST00000252699		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000568685	ENST00000424234		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000568685	ENST00000390009		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
5CDS-intron	ENST00000568685	ENST00000497637		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
3UTR-intron	ENST00000474990	ENST00000252699		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
3UTR-intron	ENST00000474990	ENST00000424234		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
3UTR-intron	ENST00000474990	ENST00000390009		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
3UTR-intron	ENST00000474990	ENST00000497637		ChiTaRS3.1			AI983764	FUS	chr16	31202391	-	ACTN4	chr19	39219797	-
intron-3CDS	ENST00000426559	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000426559	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000426559	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000426559	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000426559	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000426559	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000455785	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000455785	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000455785	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000455785	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000455785	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000455785	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000399728	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000399728	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000399728	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000399728	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000399728	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000399728	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000465604	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000465604	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000465604	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000465604	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000465604	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000465604	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000357865	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000357865	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000357865	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000357865	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000357865	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000357865	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000374291	ENST00000426559		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000374291	ENST00000455785		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-3CDS	ENST00000374291	ENST00000399728		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000374291	ENST00000465604		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000374291	ENST00000357865		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-5UTR	ENST00000374291	ENST00000374291		ChiTaRS3.1			BQ774154	STMN1	chr1	26227293	+	STMN1	chr1	26228103	-
intron-intron	ENST00000284509	ENST00000284509		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000284509	ENST00000559829		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000284509	ENST00000558959		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000559829	ENST00000284509		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000559829	ENST00000559829		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000559829	ENST00000558959		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000558959	ENST00000284509		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000558959	ENST00000559829		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-intron	ENST00000558959	ENST00000558959		ChiTaRS3.1			BF898394	ATP8B4	chr15	50192768	+	ATP8B4	chr15	50192525	-
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911254	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911254	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911254	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911254	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
Frame-shit	ENST00000323688	ENST00000323688		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000323688	ENST00000529010		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000323688	ENST00000458064		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
5CDS-intron	ENST00000323688	ENST00000532240		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000529010	ENST00000323688		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000529010	ENST00000529010		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000529010	ENST00000458064		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
5CDS-intron	ENST00000529010	ENST00000532240		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000458064	ENST00000323688		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000458064	ENST00000529010		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000458064	ENST00000458064		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
5CDS-intron	ENST00000458064	ENST00000532240		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
intron-3CDS	ENST00000532240	ENST00000323688		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
intron-3CDS	ENST00000532240	ENST00000529010		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
intron-3CDS	ENST00000532240	ENST00000458064		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
intron-intron	ENST00000532240	ENST00000532240		ChiTaRS3.1			BU674244	NUCB2	chr11	17332411	-	NUCB2	chr11	17331141	+
Frame-shit	ENST00000332050	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000332050	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000397938	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000397938	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000406548	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000406548	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000331029	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000331029	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000414183	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000414183	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000333395	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000333395	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
Frame-shit	ENST00000332035	ENST00000262053		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
5CDS-intron	ENST00000332035	ENST00000539132		ChiTaRS3.1			JN202448	EWSR1	chr22	29683123	+	ATF1	chr12	51203239	+
intron-intron	ENST00000301015	ENST00000330317		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000301015	ENST00000492742		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000301015	ENST00000398208		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000327397	ENST00000330317		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000327397	ENST00000492742		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000327397	ENST00000398208		ChiTaRS3.1			BF772274	PIEZO1	chr16	88801421	+	WDR4	chr21	44285403	+
intron-intron	ENST00000527001	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000527001	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000527001	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
3UTR-intron	ENST00000257831	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
3UTR-intron	ENST00000257831	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
3UTR-intron	ENST00000257831	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000450654	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000450654	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000450654	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000530286	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000530286	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000530286	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000533754	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000533754	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000533754	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531728	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531728	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531728	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531794	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531794	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000531794	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000527935	ENST00000336498		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000527935	ENST00000414545		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000527935	ENST00000510076		ChiTaRS3.1			BG223444	EHF	chr11	34682224	+	ARHGAP10	chr4	148970461	-
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			AK074614	INS-IGF2	chr11	2159824	+	INS-IGF2	chr11	2151645	+
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			AK074614	INS-IGF2	chr11	2159824	+	INS-IGF2	chr11	2151645	+
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			AK074614	INS-IGF2	chr11	2159824	+	INS-IGF2	chr11	2151645	+
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			AK074614	INS-IGF2	chr11	2159824	+	INS-IGF2	chr11	2151645	+
intron-intron	ENST00000202028	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000202028	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000202028	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000202028	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000202028	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000202028	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373950	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000441639	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000373946	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
3UTR-intron	ENST00000338074	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000373941	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000507166		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000358575		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000337488		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000507922		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000306932		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-intron	ENST00000479336	ENST00000510668		ChiTaRS3.1			BU607884	EPB41L1	chr20	34820612	-	FIP1L1	chr4	54319225	+
intron-3CDS	ENST00000221455	ENST00000541477		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000221455	ENST00000229277		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000221455	ENST00000538763		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000221455	ENST00000544774		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000221455	ENST00000545045		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000221455	ENST00000535366		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-intron	ENST00000221455	ENST00000534977		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000541477		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000229277		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000538763		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000544774		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000545045		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000391953	ENST00000535366		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-intron	ENST00000391953	ENST00000534977		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000541477		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000229277		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000538763		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000544774		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000545045		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-3CDS	ENST00000544944	ENST00000535366		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-intron	ENST00000544944	ENST00000534977		ChiTaRS3.1			BQ302654	CLASRP	chr19	45557798	-	ENO2	chr12	7030826	+
intron-intron	ENST00000535742	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000535742	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000535742	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000535742	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000535742	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000535742	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000535742	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000546025	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000546025	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000546025	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000546025	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000546025	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000546025	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000546025	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000345254	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000345254	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000345254	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000345254	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000345254	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000345254	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000345254	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000540668	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000540668	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000540668	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000540668	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000540668	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000540668	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000540668	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000339365	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000339365	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000339365	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000339365	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-3UTR	ENST00000339365	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000339365	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
3UTR-intron	ENST00000339365	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000411652	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000411652	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000411652	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000411652	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000411652	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000411652	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000411652	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000496827	ENST00000535742		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000496827	ENST00000546025		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000496827	ENST00000345254		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000496827	ENST00000540668		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-3UTR	ENST00000496827	ENST00000339365		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000496827	ENST00000411652		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000496827	ENST00000496827		ChiTaRS3.1			BF815734	SEC24C	chr10	75531074	-	SEC24C	chr10	75531211	+
intron-intron	ENST00000515037	ENST00000300584		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-intron	ENST00000515037	ENST00000409931		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-5UTR	ENST00000515037	ENST00000492078		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
3UTR-intron	ENST00000358869	ENST00000300584		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
3UTR-intron	ENST00000358869	ENST00000409931		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
3UTR-5UTR	ENST00000358869	ENST00000492078		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-intron	ENST00000513966	ENST00000300584		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-intron	ENST00000513966	ENST00000409931		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-5UTR	ENST00000513966	ENST00000492078		ChiTaRS3.1			BU753804	FAM114A1	chr4	38947165	-	TBC1D2B	chr15	78291238	+
intron-intron	ENST00000321728	ENST00000463705		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000321728	ENST00000370263		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000303531	ENST00000463705		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000303531	ENST00000370263		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000482000	ENST00000463705		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000482000	ENST00000370263		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000498058	ENST00000463705		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000498058	ENST00000370263		ChiTaRS3.1			AW804554	PRKCB	chr16	24175367	+	CHRNA4	chr20	61993559	+
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			AW002444	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000406451	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000406451	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000406451	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000401921	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000401921	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000401921	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000432645	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000432645	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000432645	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000441542	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000441542	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000441542	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000417496	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000417496	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000417496	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000476135	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000476135	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000476135	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000405010	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000405010	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000405010	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000428307	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000428307	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000428307	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000406072	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000406072	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000406072	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000456174	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000456174	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000456174	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000524023	ENST00000360003		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000524023	ENST00000369077		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
intron-intron	ENST00000524023	ENST00000466047		ChiTaRS3.1			BF837104	HDAC9	chr7	18556640	-	MCMBP	chr10	121596381	-
3UTR-intron	ENST00000320954	ENST00000317173		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000441698		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000518255		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000521209		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000528246		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000382490		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000320954	ENST00000517594		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000317173		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000441698		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000518255		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000521209		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000528246		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000382490		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
3UTR-intron	ENST00000449224	ENST00000517594		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000317173		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000441698		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000518255		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000521209		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000528246		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000382490		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
intron-intron	ENST00000485310	ENST00000517594		ChiTaRS3.1			BQ447254	CRTAP	chr3	33184357	-	MSRA	chr8	10021989	-
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000426496	ENST00000476522		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000426496	ENST00000367742		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000426496	ENST00000338920		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000392078	ENST00000476522		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000392078	ENST00000367742		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000392078	ENST00000338920		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
3UTR-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
3UTR-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
3UTR-intron	ENST00000476522	ENST00000476522		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
3UTR-intron	ENST00000476522	ENST00000367742		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
3UTR-intron	ENST00000476522	ENST00000338920		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000367742	ENST00000476522		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000367742	ENST00000367742		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000367742	ENST00000338920		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000338920	ENST00000476522		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000338920	ENST00000367742		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
5CDS-intron	ENST00000338920	ENST00000338920		ChiTaRS3.1			AI916384	PRRC2C	chr1	171501719	-	PRRC2C	chr1	171510024	-
intron-3CDS	ENST00000307149	ENST00000216254		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-3CDS	ENST00000307149	ENST00000396512		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-intron	ENST00000307149	ENST00000466237		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-3CDS	ENST00000569635	ENST00000216254		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-3CDS	ENST00000569635	ENST00000396512		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-intron	ENST00000569635	ENST00000466237		ChiTaRS3.1			BI000114	COG7	chr16	23434484	-	ACO2	chr22	41919928	-
intron-3CDS	ENST00000447944	ENST00000447944		ChiTaRS3.1			BQ335094	PNPT1	chr2	55898480	-	PNPT1	chr2	55894144	+
intron-intron	ENST00000392314	ENST00000242067		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000355070		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000350941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000354265		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000396127		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000425508		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000392314	ENST00000482941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000242067		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000355070		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000350941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000354265		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000396127		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000425508		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000272771	ENST00000482941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000242067		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000355070		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000350941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000354265		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000396127		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000425508		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000487771	ENST00000482941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000242067		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000355070		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000350941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000354265		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000396127		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000425508		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-intron	ENST00000409056	ENST00000482941		ChiTaRS3.1			AK130344	TMEFF2	chr2	192914091	-	BBS9	chr7	33408652	+
intron-3CDS	ENST00000359139	ENST00000456435		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000318967		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000435409		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000359139	ENST00000512605		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000359139	ENST00000476843		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000456435		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000318967		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000435409		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395741	ENST00000512605		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395741	ENST00000476843		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000456435		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000318967		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000435409		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000395744	ENST00000512605		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000395744	ENST00000476843		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000456435		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000318967		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000435409		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3CDS	ENST00000216061	ENST00000512605		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
intron-3UTR	ENST00000216061	ENST00000476843		ChiTaRS3.1			BQ352794	PPP6R2	chr22	50881538	-	INTS3	chr1	153740219	-
3UTR-3UTR	ENST00000374358	ENST00000374358		ChiTaRS3.1			AW663344	TMEM50A	chr1	25687923	-	TMEM50A	chr1	25688267	+
3UTR-intron	ENST00000374358	ENST00000480937		ChiTaRS3.1			AW663344	TMEM50A	chr1	25687923	-	TMEM50A	chr1	25688267	+
intron-3UTR	ENST00000480937	ENST00000374358		ChiTaRS3.1			AW663344	TMEM50A	chr1	25687923	-	TMEM50A	chr1	25688267	+
intron-intron	ENST00000480937	ENST00000480937		ChiTaRS3.1			AW663344	TMEM50A	chr1	25687923	-	TMEM50A	chr1	25688267	+
intron-intron	ENST00000464615	ENST00000464615		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-3UTR	ENST00000464615	ENST00000265758		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-intron	ENST00000464615	ENST00000423166		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-3UTR	ENST00000464615	ENST00000423497		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-intron	ENST00000265758	ENST00000464615		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-3UTR	ENST00000265758	ENST00000265758		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-intron	ENST00000265758	ENST00000423166		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-3UTR	ENST00000265758	ENST00000423497		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-intron	ENST00000423166	ENST00000464615		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-3UTR	ENST00000423166	ENST00000265758		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-intron	ENST00000423166	ENST00000423166		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-3UTR	ENST00000423166	ENST00000423497		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-intron	ENST00000423497	ENST00000464615		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-3UTR	ENST00000423497	ENST00000265758		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-intron	ENST00000423497	ENST00000423166		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
3UTR-3UTR	ENST00000423497	ENST00000423497		ChiTaRS3.1			AW068214	WBSCR22	chr7	73112252	-	WBSCR22	chr7	73112232	+
intron-intron	ENST00000404072	ENST00000404072		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000404072	ENST00000468288		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000404072	ENST00000356976		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000468288	ENST00000404072		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000468288	ENST00000468288		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000468288	ENST00000356976		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000356976	ENST00000404072		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000356976	ENST00000468288		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-intron	ENST00000356976	ENST00000356976		ChiTaRS3.1			BF798784	PICK1	chr22	38465439	-	PICK1	chr22	38465710	+
intron-3CDS	ENST00000534312	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000534312	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000534312	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000534312	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000534312	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000534312	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000534312	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000534312	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000534312	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000395850	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000395850	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000395850	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000395850	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000395850	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000395850	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000395850	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000395850	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000395850	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000533403	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000533403	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000533403	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000533403	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000533403	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000533403	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000533403	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000533403	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000533403	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000351554	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000351554	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000351554	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000351554	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000351554	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000351554	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000351554	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000351554	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000351554	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000415002	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000415002	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000415002	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000415002	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000415002	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000415002	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000415002	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000415002	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000415002	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000445143	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000445143	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000445143	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000445143	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000445143	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000445143	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000445143	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000445143	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000445143	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000426650	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000426650	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000426650	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000426650	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000426650	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000426650	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000426650	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000426650	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000426650	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000437761	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000437761	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000437761	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000437761	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000437761	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000437761	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000437761	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000437761	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000437761	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000527577	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000527577	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000527577	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000527577	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000527577	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000527577	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000527577	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000527577	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000527577	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000528700	ENST00000345843		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000528700	ENST00000342295		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000528700	ENST00000361572		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000528700	ENST00000348160		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-3CDS	ENST00000528700	ENST00000355476		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000528700	ENST00000511401		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000528700	ENST00000507561		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000528700	ENST00000504907		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000528700	ENST00000342320		ChiTaRS3.1			BF997054	CD59	chr11	33743973	+	RBPJ	chr4	26432077	+
intron-intron	ENST00000260810	ENST00000375688		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000375686		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000467576		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000447450		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000452329		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000551851		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000480986		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000547336		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000452630		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000550450		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000466571		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000550291		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000438415		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000546928		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000495138		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000551633		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000438725		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000547402		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000484598		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000550140		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000430726		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000550381		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000488460		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000260810	ENST00000552452		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000375688		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000375686		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000467576		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000447450		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000452329		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000551851		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000480986		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000547336		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000452630		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000550450		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000466571		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000550291		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000438415		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000546928		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000495138		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000551633		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000438725		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000547402		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000484598		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000550140		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000430726		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000550381		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000488460		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000511439	ENST00000552452		ChiTaRS3.1			BG199994	TOPBP1	chr3	133376654	-	VWA7	chr6	3075135	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408938	AFF1	chr4	87999616	+	KMT2A	chr11	118353433	+
3UTR-3CDS	ENST00000262507	ENST00000367328		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
3UTR-3CDS	ENST00000262507	ENST00000358517		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
3UTR-3CDS	ENST00000567072	ENST00000367328		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
3UTR-3CDS	ENST00000567072	ENST00000358517		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
3UTR-3CDS	ENST00000567933	ENST00000367328		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
3UTR-3CDS	ENST00000567933	ENST00000358517		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
intron-3CDS	ENST00000567384	ENST00000367328		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
intron-3CDS	ENST00000567384	ENST00000358517		ChiTaRS3.1			BG955804	COQ9	chr16	57494569	-	PLEKHG1	chr6	151130347	-
intron-intron	ENST00000348428	ENST00000396402		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000260433		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000396404		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000559878		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000405913		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000557858		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000348428	ENST00000492852		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000396402		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000260433		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000396404		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000559878		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000405913		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000557858		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000345724	ENST00000492852		ChiTaRS3.1			BF889014	MALT1	chr18	56368536	+	CYP19A1	chr15	51506489	+
intron-intron	ENST00000359653	ENST00000297185		ChiTaRS3.1			BG993754	ZRANB1	chr10	126656269	+	HSPA9	chr5	137899629	-
intron-intron	ENST00000359653	ENST00000501917		ChiTaRS3.1			BG993754	ZRANB1	chr10	126656269	+	HSPA9	chr5	137899629	-
intron-intron	ENST00000471421	ENST00000297185		ChiTaRS3.1			BG993754	ZRANB1	chr10	126656269	+	HSPA9	chr5	137899629	-
intron-intron	ENST00000471421	ENST00000501917		ChiTaRS3.1			BG993754	ZRANB1	chr10	126656269	+	HSPA9	chr5	137899629	-
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			BU579864	MEG3	chr14	101302125	-	MEG3	chr14	101302553	+
intron-3UTR	ENST00000372572	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000372573	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000361346	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000361776	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000545068	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000372571	ENST00000339754		ChiTaRS3.1			BF826354	FOXJ3	chr1	42725855	+	NECAP1	chr12	8249407	-
intron-3UTR	ENST00000335762	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399655	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000480911	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399644	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000344100	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399638	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399629	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399597	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000327702	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399621	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399649	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399637	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000402845	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399591	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399641	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000347598	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399606	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399595	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399601	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399603	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399634	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000399617	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000406454	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
intron-3UTR	ENST00000491104	ENST00000272233		ChiTaRS3.1			BF993074	CACNA1C	chr12	2296057	-	RHOB	chr2	20648973	-
5CDS-intron	ENST00000522793	ENST00000295324		ChiTaRS3.1			BG995494	TTC1	chr5	159437728	+	CDC42EP3	chr2	37875774	+
5CDS-intron	ENST00000231238	ENST00000295324		ChiTaRS3.1			BG995494	TTC1	chr5	159437728	+	CDC42EP3	chr2	37875774	+
intron-intron	ENST00000520274	ENST00000295324		ChiTaRS3.1			BG995494	TTC1	chr5	159437728	+	CDC42EP3	chr2	37875774	+
5CDS-intron	ENST00000547405	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547405	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000452455	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000360610	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000441232	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000392934	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000547509	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361685	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
intron-intron	ENST00000550501	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000549145	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000553190	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000536007	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000541119	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000545503	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000361466	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000551300	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000547405		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000452455		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000360610		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000441232		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000392934		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000547509		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000361685		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000550501		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000549145		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000553190		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000536007		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000541119		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000545503		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000361466		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000551300		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
5CDS-intron	ENST00000550270	ENST00000550270		ChiTaRS3.1			AW377754	MYBPC1	chr12	102038495	-	MYBPC1	chr12	102053609	-
Frame-shit	ENST00000541477	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000541477	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000541477	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000229277	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000229277	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000229277	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000538763	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000538763	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000538763	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000544774	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000544774	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000544774	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000545045	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000545045	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000545045	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000535366	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
Frame-shit	ENST00000535366	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
5CDS-intron	ENST00000535366	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
3UTR-3CDS	ENST00000534977	ENST00000399537		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
3UTR-3CDS	ENST00000534977	ENST00000430969		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
3UTR-intron	ENST00000534977	ENST00000399434		ChiTaRS3.1			BQ316184	ENO2	chr12	7031242	-	TNRC18	chr7	5399156	+
intron-3CDS	ENST00000268097	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000268097	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000566304	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000457859	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567159	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000429918	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000266070		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000395343		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000395340		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000395335		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000370371		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000370368		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000354665		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000370366		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
intron-3CDS	ENST00000567213	ENST00000266071		ChiTaRS3.1			BG960554	HEXA	chr15	72630206	+	DIDO1	chr20	61538545	-
3UTR-3UTR	ENST00000261254	ENST00000261254		ChiTaRS3.1			BG953354	CCND2	chr12	4411335	-	CCND2	chr12	4413194	-
3UTR-intron	ENST00000261254	ENST00000541542		ChiTaRS3.1			BG953354	CCND2	chr12	4411335	-	CCND2	chr12	4413194	-
intron-3UTR	ENST00000541542	ENST00000261254		ChiTaRS3.1			BG953354	CCND2	chr12	4411335	-	CCND2	chr12	4413194	-
intron-intron	ENST00000541542	ENST00000541542		ChiTaRS3.1			BG953354	CCND2	chr12	4411335	-	CCND2	chr12	4413194	-
5UTR-3UTR	ENST00000309092	ENST00000230895		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
5UTR-intron	ENST00000309092	ENST00000432074		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
5UTR-intron	ENST00000309092	ENST00000510546		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
intron-3UTR	ENST00000369084	ENST00000230895		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
intron-intron	ENST00000369084	ENST00000432074		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
intron-intron	ENST00000369084	ENST00000510546		ChiTaRS3.1			BP392984	MRPS21	chr1	150266322	-	DAP	chr5	10679800	-
intron-5UTR	ENST00000389960	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000389960	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000389960	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389960	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000316356	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000316356	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000316356	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000316356	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528231	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528231	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528231	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528231	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000527523	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000527523	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000527523	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000527523	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000524452	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000524452	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000524452	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000524452	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000359152	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000359152	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000359152	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000359152	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000354566	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000354566	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000354566	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000354566	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525702	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525702	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525702	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525702	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525423	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525423	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000525423	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000525423	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000529581	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000529581	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000529581	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000529581	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000389958	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000389958	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000389958	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000389958	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000533892	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000533892	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000533892	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000533892	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528566	ENST00000389960		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528566	ENST00000316356		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-5UTR	ENST00000528566	ENST00000528231		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000527523		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000524452		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000359152		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000354566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000525702		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000525423		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000529581		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000389958		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000533892		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-intron	ENST00000528566	ENST00000528566		ChiTaRS3.1			BG952264	SYTL2	chr11	85459338	-	SYTL2	chr11	85469047	-
intron-3UTR	ENST00000398514	ENST00000398514		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000398514	ENST00000343218		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000398514	ENST00000534907		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000398514	ENST00000504965		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000343218	ENST00000398514		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000343218	ENST00000343218		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000343218	ENST00000534907		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000343218	ENST00000504965		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000534907	ENST00000398514		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000534907	ENST00000343218		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000534907	ENST00000534907		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000534907	ENST00000504965		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000504965	ENST00000398514		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-3UTR	ENST00000504965	ENST00000343218		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000504965	ENST00000534907		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000504965	ENST00000504965		ChiTaRS3.1			BU617034	DPYSL3	chr5	146770767	+	DPYSL3	chr5	146771344	-
intron-intron	ENST00000371799	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371799	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371799	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371799	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371799	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371799	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371799	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000277415	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000277415	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000277415	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000277415	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000277415	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000277415	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000277415	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000252854	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000252854	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000252854	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000252854	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000252854	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000252854	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000252854	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371801	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371801	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371801	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371801	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371801	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000371801	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000371801	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371796	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371796	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371796	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371796	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371796	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371796	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371796	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000392991	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000392991	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000392991	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000392991	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000392991	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-intron	ENST00000392991	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
intron-3UTR	ENST00000392991	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371793	ENST00000371799		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371793	ENST00000277415		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371793	ENST00000252854		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371793	ENST00000371801		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371793	ENST00000371796		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-intron	ENST00000371793	ENST00000392991		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
3UTR-3UTR	ENST00000371793	ENST00000371793		ChiTaRS3.1			BU079004	OLFM1	chr9	138012132	-	OLFM1	chr9	138012309	+
Frame-shit	ENST00000295598	ENST00000295598		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000295598	ENST00000537345		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000295598	ENST00000369496		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
5CDS-3UTR	ENST00000295598	ENST00000491156		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000537345	ENST00000295598		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000537345	ENST00000537345		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000537345	ENST00000369496		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
5CDS-3UTR	ENST00000537345	ENST00000491156		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000369496	ENST00000295598		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000369496	ENST00000537345		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
Frame-shit	ENST00000369496	ENST00000369496		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
5CDS-3UTR	ENST00000369496	ENST00000491156		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
intron-3UTR	ENST00000491156	ENST00000491156		ChiTaRS3.1			BQ307354	ATP1A1	chr1	116931269	+	ATP1A1	chr1	116932099	-
3UTR-3CDS	ENST00000361924	ENST00000361924		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000361924	ENST00000435830		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000361924	ENST00000444882		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000361924	ENST00000356847		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
intron-3CDS	ENST00000435830	ENST00000361924		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
intron-intron	ENST00000435830	ENST00000435830		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
intron-intron	ENST00000435830	ENST00000444882		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
intron-intron	ENST00000435830	ENST00000356847		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-3CDS	ENST00000444882	ENST00000361924		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000444882	ENST00000435830		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000444882	ENST00000444882		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000444882	ENST00000356847		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-3CDS	ENST00000356847	ENST00000361924		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000356847	ENST00000435830		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000356847	ENST00000444882		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
3UTR-intron	ENST00000356847	ENST00000356847		ChiTaRS3.1			AW439904	GOLGA4	chr3	37407738	+	GOLGA4	chr3	37369134	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911244	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911244	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911244	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911244	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000338368	ENST00000338368		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-3UTR	ENST00000338368	ENST00000314191		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-5UTR	ENST00000338368	ENST00000523565		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-3UTR	ENST00000314191	ENST00000338368		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-3UTR	ENST00000314191	ENST00000314191		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-5UTR	ENST00000314191	ENST00000523565		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-3UTR	ENST00000523565	ENST00000338368		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-3UTR	ENST00000523565	ENST00000314191		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-5UTR	ENST00000523565	ENST00000523565		ChiTaRS3.1			AI961454	PRKDC	chr8	48686030	+	PRKDC	chr8	48686077	-
intron-intron	ENST00000389327	ENST00000520810		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000416505		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000519735		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000520835		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000379708		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000518983		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000522147		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389327	ENST00000522785		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000520810		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000416505		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000519735		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000520835		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000379708		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000518983		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000522147		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000389328	ENST00000522785		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000520810		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000416505		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000519735		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000520835		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000379708		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000518983		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000522147		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000438773	ENST00000522785		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000520810		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000416505		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000519735		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000520835		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000379708		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000518983		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000522147		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000522504	ENST00000522785		ChiTaRS3.1			AW813634	TRAPPC9	chr8	141345003	+	IKBKB	chr8	42181283	+
intron-intron	ENST00000288670	ENST00000288670		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000288670	ENST00000475377		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000288670	ENST00000497192		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000475377	ENST00000288670		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000475377	ENST00000475377		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000475377	ENST00000497192		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000497192	ENST00000288670		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000497192	ENST00000475377		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
intron-intron	ENST00000497192	ENST00000497192		ChiTaRS3.1			BG698704	FMNL2	chr2	153330366	+	FMNL2	chr2	153287359	+
5CDS-5UTR	ENST00000321358	ENST00000467803		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
5CDS-5UTR	ENST00000321358	ENST00000447325		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
5CDS-5UTR	ENST00000321358	ENST00000321256		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
5CDS-5UTR	ENST00000321358	ENST00000427641		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
5CDS-5UTR	ENST00000321358	ENST00000452404		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
5CDS-5UTR	ENST00000321358	ENST00000422610		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000467803		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000447325		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000321256		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000427641		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000452404		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-5UTR	ENST00000467957	ENST00000422610		ChiTaRS3.1			BU536214	YBX1	chr1	43148360	+	NCBP2	chr3	196663955	-
intron-3UTR	ENST00000390237	ENST00000398141		ChiTaRS3.1			AW613384	IGKC	chr2	89156829	+	HPS4	chr22	26847690	+
intron-3UTR	ENST00000390237	ENST00000398145		ChiTaRS3.1			AW613384	IGKC	chr2	89156829	+	HPS4	chr22	26847690	+
intron-intron	ENST00000390237	ENST00000402105		ChiTaRS3.1			AW613384	IGKC	chr2	89156829	+	HPS4	chr22	26847690	+
intron-intron	ENST00000390237	ENST00000336873		ChiTaRS3.1			AW613384	IGKC	chr2	89156829	+	HPS4	chr22	26847690	+
intron-intron	ENST00000390237	ENST00000493455		ChiTaRS3.1			AW613384	IGKC	chr2	89156829	+	HPS4	chr22	26847690	+
In-frame	ENST00000348520	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000348520	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000380038	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000389744	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000557575	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000553286	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000347839	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000555836	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000334553	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000246489	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000557450	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000554280	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000452929	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000348520		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000380038		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000389744		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000557575		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000553286		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000347839		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000555836		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000334553		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000246489		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000557450		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000554280		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000452929		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
intron-3CDS	ENST00000445352	ENST00000445352		ChiTaRS3.1			BF950914	KLC1	chr14	104145884	+	KLC1	chr14	104136518	+
In-frame	ENST00000398606	ENST00000508803		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382892		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382891		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382895		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398606	ENST00000482415		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398606	ENST00000382888		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000514045		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000436793		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000420906		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000503128		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000398261		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000508803		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382892		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382891		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382895		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398603	ENST00000482415		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398603	ENST00000382888		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000514045		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000436793		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000420906		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000503128		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000398261		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000508803		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382892		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382891		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382895		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3UTR	ENST00000498765	ENST00000482415		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3UTR	ENST00000498765	ENST00000382888		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000514045		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000436793		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000420906		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000503128		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000398261		ChiTaRS3.1			AW390894	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000341267	ENST00000495013		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
5CDS-intron	ENST00000341267	ENST00000258648		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
5CDS-intron	ENST00000341267	ENST00000378586		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
5CDS-intron	ENST00000331224	ENST00000495013		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
5CDS-intron	ENST00000331224	ENST00000258648		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
5CDS-intron	ENST00000331224	ENST00000378586		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
intron-intron	ENST00000556051	ENST00000495013		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
intron-intron	ENST00000556051	ENST00000258648		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
intron-intron	ENST00000556051	ENST00000378586		ChiTaRS3.1			BU073434	DLK1	chr14	101200727	+	MED4	chr13	48656694	-
intron-intron	ENST00000380958	ENST00000380958		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000380958	ENST00000399613		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000380958	ENST00000282391		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000380958	ENST00000483842		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000399613	ENST00000380958		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000399613	ENST00000399613		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000399613	ENST00000282391		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000399613	ENST00000483842		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000282391	ENST00000380958		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000282391	ENST00000399613		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000282391	ENST00000282391		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000282391	ENST00000483842		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000483842	ENST00000380958		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000483842	ENST00000399613		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000483842	ENST00000282391		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000483842	ENST00000483842		ChiTaRS3.1			AL699794	PAN3	chr13	28736439	+	PAN3	chr13	28715406	+
intron-intron	ENST00000313655	ENST00000313655		ChiTaRS3.1			BG958494	DSCC1	chr8	120863541	+	DSCC1	chr8	120862946	-
intron-3CDS	ENST00000380512	ENST00000380512		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-3CDS	ENST00000380512	ENST00000293831		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000380512	ENST00000577269		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000380512	ENST00000582746		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000380512	ENST00000581808		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000293831	ENST00000380512		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000293831	ENST00000293831		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000293831	ENST00000577269		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000293831	ENST00000582746		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000293831	ENST00000581808		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000577269	ENST00000380512		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000577269	ENST00000293831		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000577269	ENST00000577269		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000577269	ENST00000582746		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000577269	ENST00000581808		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000582746	ENST00000380512		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
Frame-shit	ENST00000582746	ENST00000293831		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000582746	ENST00000577269		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000582746	ENST00000582746		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
5CDS-intron	ENST00000582746	ENST00000581808		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-3CDS	ENST00000581808	ENST00000380512		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-3CDS	ENST00000581808	ENST00000293831		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000581808	ENST00000577269		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000581808	ENST00000582746		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000581808	ENST00000581808		ChiTaRS3.1			AU119214	EIF4A1	chr17	7480805	+	EIF4A1	chr17	7476144	+
intron-intron	ENST00000429084	ENST00000429084		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000429084	ENST00000359593		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000429084	ENST00000478501		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000429084	ENST00000421755		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000429084	ENST00000422582		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000359593	ENST00000429084		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000359593	ENST00000359593		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000359593	ENST00000478501		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000359593	ENST00000421755		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000359593	ENST00000422582		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000478501	ENST00000429084		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000478501	ENST00000359593		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000478501	ENST00000478501		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000478501	ENST00000421755		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000478501	ENST00000422582		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000421755	ENST00000429084		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000421755	ENST00000359593		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000421755	ENST00000478501		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000421755	ENST00000421755		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000421755	ENST00000422582		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000422582	ENST00000429084		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000422582	ENST00000359593		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000422582	ENST00000478501		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000422582	ENST00000421755		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000422582	ENST00000422582		ChiTaRS3.1			BU184274	AP4M1	chr7	99706048	+	AP4M1	chr7	99705750	-
intron-intron	ENST00000307751	ENST00000434513		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000361221		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000452522		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000375415		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000375420		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000469726		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000375408		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000307751	ENST00000167825		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000434513		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000361221		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000452522		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000375415		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000375420		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000469726		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000375408		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000597803	ENST00000167825		ChiTaRS3.1			BG980034	LGALS4	chr19	39292540	+	ARHGEF10L	chr1	17909092	-
intron-intron	ENST00000225394	ENST00000573984		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000575251		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000301391		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000225394	ENST00000575411		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000573984		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000575251		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000301391		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000394869	ENST00000575411		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000573984		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000575251		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000301391		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000581348	ENST00000575411		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000573984		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000575251		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000301391		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-intron	ENST00000579937	ENST00000575411		ChiTaRS3.1			AW007184	GIT1	chr17	27900900	+	CYB5D2	chr17	4058542	-
intron-3CDS	ENST00000537045	ENST00000053867		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000537045	ENST00000589265		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-intron	ENST00000537045	ENST00000589923		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000263196	ENST00000053867		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000263196	ENST00000589265		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-intron	ENST00000263196	ENST00000589923		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000545799	ENST00000053867		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000545799	ENST00000589265		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-intron	ENST00000545799	ENST00000589923		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000473832	ENST00000053867		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-3CDS	ENST00000473832	ENST00000589265		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
intron-intron	ENST00000473832	ENST00000589923		ChiTaRS3.1			BQ335954	DGCR2	chr22	19035819	+	GRN	chr17	42430150	+
In-frame	ENST00000396373	ENST00000511072		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000442529		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000378398		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000441472		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000378391		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000514189		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
In-frame	ENST00000396373	ENST00000270722		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
5CDS-intron	ENST00000396373	ENST00000512462		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000511072		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000442529		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000378398		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000441472		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000378391		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000514189		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-3CDS	ENST00000544715	ENST00000270722		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-intron	ENST00000544715	ENST00000512462		ChiTaRS3.1			FR719953	ETV6	chr12	12006497	+	PRDM16	chr1	3102687	+
intron-intron	ENST00000330777	ENST00000330777		ChiTaRS3.1			BE061114	SGK223	chr8	8207741	-	SGK223	chr8	8209899	-
intron-intron	ENST00000330777	ENST00000520004		ChiTaRS3.1			BE061114	SGK223	chr8	8207741	-	SGK223	chr8	8209899	-
intron-intron	ENST00000520004	ENST00000330777		ChiTaRS3.1			BE061114	SGK223	chr8	8207741	-	SGK223	chr8	8209899	-
intron-intron	ENST00000520004	ENST00000520004		ChiTaRS3.1			BE061114	SGK223	chr8	8207741	-	SGK223	chr8	8209899	-
intron-intron	ENST00000594624	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594624	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000594688	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000457234	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593491	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000597203	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000599276	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000593740	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000594624		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000594688		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000457234		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000593491		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000597203		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000599276		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000593740		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000596116	ENST00000596116		ChiTaRS3.1			W28804	LIPE-AS1	chr19	42907251	-	LIPE-AS1	chr19	42906932	+
intron-intron	ENST00000371222	ENST00000215882		ChiTaRS3.1			CD614314	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000451283		ChiTaRS3.1			CD614314	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
intron-intron	ENST00000371222	ENST00000461267		ChiTaRS3.1			CD614314	JUN	chr1	59249716	+	SLC25A1	chr22	19164999	+
3UTR-3UTR	ENST00000466801	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
3UTR-intron	ENST00000466801	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
3UTR-3UTR	ENST00000466801	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
3UTR-intron	ENST00000466801	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
3UTR-intron	ENST00000466801	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
3UTR-3UTR	ENST00000466801	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409321	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409321	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409321	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409321	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409321	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409321	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409115	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409115	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409115	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409115	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000409115	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000409115	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000341369	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000341369	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000341369	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000341369	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000341369	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000341369	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-3UTR	ENST00000409683	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-intron	ENST00000409683	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-3UTR	ENST00000409683	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-intron	ENST00000409683	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-intron	ENST00000409683	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-3UTR	ENST00000409683	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000410064	ENST00000472174		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000410064	ENST00000532642		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000410064	ENST00000236067		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000410064	ENST00000471859		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-intron	ENST00000410064	ENST00000472277		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
5CDS-3UTR	ENST00000410064	ENST00000498664		ChiTaRS3.1			CN272094	PTMA	chr2	232577161	-	ATP6V0B	chr1	44443905	+
intron-intron	ENST00000280193	ENST00000280193		ChiTaRS3.1			N27674	VEGFC	chr4	177691026	-	VEGFC	chr4	177698221	-
intron-intron	ENST00000280193	ENST00000507638		ChiTaRS3.1			N27674	VEGFC	chr4	177691026	-	VEGFC	chr4	177698221	-
intron-intron	ENST00000507638	ENST00000280193		ChiTaRS3.1			N27674	VEGFC	chr4	177691026	-	VEGFC	chr4	177698221	-
intron-intron	ENST00000507638	ENST00000507638		ChiTaRS3.1			N27674	VEGFC	chr4	177691026	-	VEGFC	chr4	177698221	-
intron-intron	ENST00000283943	ENST00000539909		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000283943	ENST00000286621		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000283943	ENST00000372734		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000283943	ENST00000541550		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000283943	ENST00000467840		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389045	ENST00000539909		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389045	ENST00000286621		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389045	ENST00000372734		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389045	ENST00000541550		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389045	ENST00000467840		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389044	ENST00000539909		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389044	ENST00000286621		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389044	ENST00000372734		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389044	ENST00000541550		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000389044	ENST00000467840		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000543084	ENST00000539909		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000543084	ENST00000286621		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000543084	ENST00000372734		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000543084	ENST00000541550		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000543084	ENST00000467840		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000409677	ENST00000539909		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000409677	ENST00000286621		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000409677	ENST00000372734		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000409677	ENST00000541550		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
intron-intron	ENST00000409677	ENST00000467840		ChiTaRS3.1			BX098414	TRIP12	chr2	230702309	-	ADK	chr10	76101216	+
5CDS-intron	ENST00000395633	ENST00000301821		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000395633	ENST00000443003		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000395633	ENST00000478027		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000215375	ENST00000301821		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000215375	ENST00000443003		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000215375	ENST00000478027		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000591660	ENST00000301821		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000591660	ENST00000443003		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000591660	ENST00000478027		ChiTaRS3.1			BC009974	ATP5D	chr19	1241935	-	RPSA	chr19	24009910	+
5CDS-intron	ENST00000433674	ENST00000458063		ChiTaRS3.1			BE093114	CAPN2	chr1	223933116	-	ZNF32-AS3	chr10	44139755	+
5CDS-intron	ENST00000295006	ENST00000458063		ChiTaRS3.1			BE093114	CAPN2	chr1	223933116	-	ZNF32-AS3	chr10	44139755	+
intron-intron	ENST00000474026	ENST00000458063		ChiTaRS3.1			BE093114	CAPN2	chr1	223933116	-	ZNF32-AS3	chr10	44139755	+
intron-3CDS	ENST00000397256	ENST00000269856		ChiTaRS3.1			BI033804	ARPC4-TTLL3	chr3	9882233	+	FEM1A	chr19	4792780	-
intron-intron	ENST00000376279	ENST00000376279		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000376286		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000376285		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376279	ENST00000485946		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376279		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376286		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000376285		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376286	ENST00000485946		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376279		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376286		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000376285		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000376285	ENST00000485946		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376279		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376286		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000376285		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000485946	ENST00000485946		ChiTaRS3.1			BE071684	PCCA	chr13	100818025	-	PCCA	chr13	100820153	+
intron-intron	ENST00000519807	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000519807	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000519807	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000009589	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000009589	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000009589	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000524349	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000524349	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000524349	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000520490	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000520490	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000520490	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000520627	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000520627	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000520627	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000521262	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000521262	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000521262	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000523936	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000523936	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000523936	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000519606	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000519606	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000519606	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000518875	ENST00000360658		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-intron	ENST00000518875	ENST00000494383		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-5UTR	ENST00000518875	ENST00000597542		ChiTaRS3.1			BM051734	RPS20	chr8	56987061	+	TLR9	chr3	52263983	-
intron-3CDS	ENST00000378588	ENST00000260408		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000378588	ENST00000402627		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000378588	ENST00000561288		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000378588	ENST00000396140		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000378588	ENST00000558733		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-3CDS	ENST00000545017	ENST00000260408		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000545017	ENST00000402627		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000545017	ENST00000561288		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000545017	ENST00000396140		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000545017	ENST00000558733		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-3CDS	ENST00000536160	ENST00000260408		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000536160	ENST00000402627		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000536160	ENST00000561288		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000536160	ENST00000396140		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000536160	ENST00000558733		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-3CDS	ENST00000492288	ENST00000260408		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000492288	ENST00000402627		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000492288	ENST00000561288		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000492288	ENST00000396140		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
intron-intron	ENST00000492288	ENST00000558733		ChiTaRS3.1			Z48614	CYBB	chrX	37669885	-	ADAM10	chr15	58913713	-
Frame-shit	ENST00000263228	ENST00000252244		ChiTaRS3.1			BC028294	UBE2R2	chr9	33917123	+	KRT1	chr12	53074124	-
intron-intron	ENST00000342505	ENST00000342505		ChiTaRS3.1			DB350514	JAK1	chr1	65305974	-	JAK1	chr1	65322384	-
intron-intron	ENST00000342505	ENST00000465376		ChiTaRS3.1			DB350514	JAK1	chr1	65305974	-	JAK1	chr1	65322384	-
intron-intron	ENST00000465376	ENST00000342505		ChiTaRS3.1			DB350514	JAK1	chr1	65305974	-	JAK1	chr1	65322384	-
intron-intron	ENST00000465376	ENST00000465376		ChiTaRS3.1			DB350514	JAK1	chr1	65305974	-	JAK1	chr1	65322384	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766334	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766334	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000559935	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000559935	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000559935	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000559935	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000559935	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000559935	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-3CDS	ENST00000559416	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559416	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559416	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559416	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559416	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559416	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-3CDS	ENST00000558813	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000558813	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000558813	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000558813	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000558813	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000558813	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-3CDS	ENST00000331200	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000331200	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000331200	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000331200	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000331200	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000331200	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-3CDS	ENST00000455976	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000455976	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000455976	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000455976	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000455976	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000455976	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-3CDS	ENST00000559540	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559540	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559540	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559540	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559540	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
3UTR-5UTR	ENST00000559540	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-3CDS	ENST00000561350	ENST00000379056		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000561350	ENST00000529421		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000561350	ENST00000530705		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000561350	ENST00000379060		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000561350	ENST00000379055		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-5UTR	ENST00000561350	ENST00000309246		ChiTaRS3.1			BM090964	DUT	chr15	48634286	-	TPT1	chr13	45913712	+
intron-intron	ENST00000397493	ENST00000333762		ChiTaRS3.1			BF750874	PRR14L	chr22	32077343	-	H1FX	chr3	129033614	+
intron-intron	ENST00000327423	ENST00000333762		ChiTaRS3.1			BF750874	PRR14L	chr22	32077343	-	H1FX	chr3	129033614	+
intron-intron	ENST00000434485	ENST00000333762		ChiTaRS3.1			BF750874	PRR14L	chr22	32077343	-	H1FX	chr3	129033614	+
intron-intron	ENST00000461722	ENST00000333762		ChiTaRS3.1			BF750874	PRR14L	chr22	32077343	-	H1FX	chr3	129033614	+
3UTR-3UTR	ENST00000373265	ENST00000373265		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
3UTR-3UTR	ENST00000373265	ENST00000373264		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
3UTR-intron	ENST00000373265	ENST00000480353		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
3UTR-3UTR	ENST00000373264	ENST00000373265		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
3UTR-3UTR	ENST00000373264	ENST00000373264		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
3UTR-intron	ENST00000373264	ENST00000480353		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
intron-3UTR	ENST00000480353	ENST00000373265		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
intron-3UTR	ENST00000480353	ENST00000373264		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
intron-intron	ENST00000480353	ENST00000480353		ChiTaRS3.1			BF751344	CDK9	chr9	130552230	-	CDK9	chr9	130552082	+
Frame-shit	ENST00000441003	ENST00000221476		ChiTaRS3.1			DV080414	MUC2	chr11	1075879	-	CKM	chr19	45818743	+
Frame-shit	ENST00000359061	ENST00000221476		ChiTaRS3.1			DV080414	MUC2	chr11	1075879	-	CKM	chr19	45818743	+
intron-3CDS	ENST00000361558	ENST00000221476		ChiTaRS3.1			DV080414	MUC2	chr11	1075879	-	CKM	chr19	45818743	+
intron-3CDS	ENST00000333592	ENST00000221476		ChiTaRS3.1			DV080414	MUC2	chr11	1075879	-	CKM	chr19	45818743	+
5CDS-3UTR	ENST00000421177	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000421177	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000421177	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000421177	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000513555	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000513555	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000513555	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000513555	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
intron-3UTR	ENST00000450293	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
intron-3UTR	ENST00000450293	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
intron-intron	ENST00000450293	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
intron-intron	ENST00000450293	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000505246	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000505246	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000505246	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000505246	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000506380	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000506380	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000506380	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000506380	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000397958	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000397958	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000397958	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000397958	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000433139	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000433139	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000433139	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000433139	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000504171	ENST00000302351		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-3UTR	ENST00000504171	ENST00000510316		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000504171	ENST00000509284		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
5CDS-intron	ENST00000504171	ENST00000537006		ChiTaRS3.1			DA782914	NSG1	chr4	4389377	+	ENC1	chr5	73925286	-
intron-3UTR	ENST00000441750	ENST00000526148		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000441750	ENST00000525681		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000441750	ENST00000339995		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000441750	ENST00000396525		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-intron	ENST00000441750	ENST00000525995		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000281513	ENST00000526148		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000281513	ENST00000525681		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000281513	ENST00000339995		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000281513	ENST00000396525		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-intron	ENST00000281513	ENST00000525995		ChiTaRS3.1			BE088864	NBAS	chr2	15607861	+	EIF4G2	chr11	10818828	+
intron-3UTR	ENST00000375820	ENST00000375820		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000375820	ENST00000543140		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000375820	ENST00000467182		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-3UTR	ENST00000543140	ENST00000375820		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000543140	ENST00000543140		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000543140	ENST00000467182		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-3UTR	ENST00000467182	ENST00000375820		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000467182	ENST00000543140		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000467182	ENST00000467182		ChiTaRS3.1			W58624	COL4A1	chr13	110801502	+	COL4A1	chr13	110801974	-
intron-intron	ENST00000536252	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000536252	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000545103	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000540348	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000543944	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000297661	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000379186	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000536252		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000545103		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000540348		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000543944		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000297661		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000379186		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
intron-intron	ENST00000359544	ENST00000359544		ChiTaRS3.1			AW891794	UBAP1	chr9	34218049	+	UBAP1	chr9	34217441	+
Frame-shit	ENST00000276440	ENST00000276440		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
5CDS-intron	ENST00000276440	ENST00000410074		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
5CDS-intron	ENST00000276440	ENST00000481100		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-3CDS	ENST00000410074	ENST00000276440		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-intron	ENST00000410074	ENST00000410074		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-intron	ENST00000410074	ENST00000481100		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-3CDS	ENST00000481100	ENST00000276440		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-intron	ENST00000481100	ENST00000410074		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-intron	ENST00000481100	ENST00000481100		ChiTaRS3.1			BC057384	DOCK5	chr8	25230141	-	DOCK5	chr8	25230160	+
intron-intron	ENST00000378330	ENST00000378330		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000378330	ENST00000301030		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000378330	ENST00000563291		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000378330	ENST00000567736		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000301030	ENST00000378330		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000301030	ENST00000301030		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000301030	ENST00000563291		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000301030	ENST00000567736		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000563291	ENST00000378330		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000563291	ENST00000301030		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000563291	ENST00000563291		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000563291	ENST00000567736		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000567736	ENST00000378330		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000567736	ENST00000301030		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000567736	ENST00000563291		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000567736	ENST00000567736		ChiTaRS3.1			CV342044	ANKRD11	chr16	89384869	+	ANKRD11	chr16	89384601	+
intron-intron	ENST00000445552	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000337845	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000329240	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000573185	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000570550	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000336125	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000549904	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000550273	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000549665	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000553155	ENST00000261402		ChiTaRS3.1			BF356134	ARL17A	chr17	637135	-	NUAK1	chr12	106491942	-
intron-intron	ENST00000270458	ENST00000351937		ChiTaRS3.1			BF343834	CACNG8	chr19	54468204	+	TRIM41	chr5	180661885	+
intron-3UTR	ENST00000270458	ENST00000315073		ChiTaRS3.1			BF343834	CACNG8	chr19	54468204	+	TRIM41	chr5	180661885	+
intron-intron	ENST00000270458	ENST00000510072		ChiTaRS3.1			BF343834	CACNG8	chr19	54468204	+	TRIM41	chr5	180661885	+
intron-intron	ENST00000367355	ENST00000367355		ChiTaRS3.1			BE503924	LINC00862	chr1	200332270	+	LINC00862	chr1	200331533	+
intron-intron	ENST00000265537	ENST00000358951		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000265537	ENST00000462353		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000415258	ENST00000358951		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000415258	ENST00000462353		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000414984	ENST00000358951		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000414984	ENST00000462353		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000467936	ENST00000358951		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-intron	ENST00000467936	ENST00000462353		ChiTaRS3.1			AA905398	LARS2	chr3	45887253	+	RAB3GAP2	chr1	220421317	+
intron-3UTR	ENST00000360655	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000360655	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000360655	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000360655	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396085	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396085	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396085	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000396085	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000349880	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000349880	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000349880	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000349880	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396087	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396087	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000396087	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000396087	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000527559	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000527559	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000527559	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000527559	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000540292	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000540292	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000540292	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000540292	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000533917	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000533917	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000533917	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000533917	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000311043	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000311043	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000311043	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000311043	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000534229	ENST00000331886		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000534229	ENST00000394147		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-3UTR	ENST00000534229	ENST00000551156		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000534229	ENST00000549079		ChiTaRS3.1			BE717774	NAV2	chr11	19842188	+	DGKA	chr12	56347616	-
intron-intron	ENST00000592950	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000592950	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585870	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588726	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590344	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000593246	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000590721	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000451495	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586973	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000586464	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000588425	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000585582	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000411835	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000589840	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000429200	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000587596	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591131	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000592950		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000585870		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000588726		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000590344		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000593246		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000590721		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000451495		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000586973		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000586464		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000588425		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000585582		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000411835		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000589840		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000429200		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000587596		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000591131		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-intron	ENST00000591300	ENST00000591300		ChiTaRS3.1			DA812344	TEX26-AS1	chr13	31497033	+	TEX26-AS1	chr13	31491585	+
intron-3UTR	ENST00000454189	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000454189	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000454189	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000454189	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000398361	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000398361	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000398361	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000398361	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000316715	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000316715	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000316715	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000316715	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000493677	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000493677	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000493677	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000493677	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000355135	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000355135	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000355135	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000355135	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000356942	ENST00000331925		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000356942	ENST00000573283		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000356942	ENST00000575842		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-3UTR	ENST00000356942	ENST00000575087		ChiTaRS3.1			DB548164	GPM6B	chrX	13791044	-	ACTG1	chr17	79477261	-
intron-intron	ENST00000514064	ENST00000514064		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-3UTR	ENST00000514064	ENST00000311623		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-intron	ENST00000514064	ENST00000435974		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
3UTR-intron	ENST00000311623	ENST00000514064		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
3UTR-3UTR	ENST00000311623	ENST00000311623		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
3UTR-intron	ENST00000311623	ENST00000435974		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-intron	ENST00000435974	ENST00000514064		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-3UTR	ENST00000435974	ENST00000311623		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-intron	ENST00000435974	ENST00000435974		ChiTaRS3.1			EB390424	C4orf26	chr4	76489925	+	C4orf26	chr4	76489763	-
intron-3UTR	ENST00000249883	ENST00000360162		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000249883	ENST00000356080		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000249883	ENST00000277900		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-intron	ENST00000249883	ENST00000497125		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000422605	ENST00000360162		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000422605	ENST00000356080		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000422605	ENST00000277900		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-intron	ENST00000422605	ENST00000497125		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000514516	ENST00000360162		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000514516	ENST00000356080		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000514516	ENST00000277900		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-intron	ENST00000514516	ENST00000497125		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000513145	ENST00000360162		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000513145	ENST00000356080		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000513145	ENST00000277900		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-intron	ENST00000513145	ENST00000497125		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000511759	ENST00000360162		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000511759	ENST00000356080		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-3UTR	ENST00000511759	ENST00000277900		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
intron-intron	ENST00000511759	ENST00000497125		ChiTaRS3.1			C16484	AMOTL2	chr3	134075089	+	ADD3	chr10	111893426	+
Frame-shit	ENST00000256442	ENST00000334418		ChiTaRS3.1			AW855254	CCNB1	chr5	68470886	-	CCDC84	chr11	118869722	+
5CDS-intron	ENST00000256442	ENST00000580556		ChiTaRS3.1			AW855254	CCNB1	chr5	68470886	-	CCDC84	chr11	118869722	+
intron-3CDS	ENST00000389341	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000389341	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000389341	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000389341	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000389341	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000389341	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000389341	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000389341	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000389341	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000342301	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000342301	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000342301	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000342301	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000342301	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000342301	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000342301	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000342301	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000342301	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000533720	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000533720	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000533720	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000533720	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000533720	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000533720	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000533720	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000533720	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000533720	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000526816	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000526816	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000526816	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000526816	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000526816	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000526816	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000526816	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000526816	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000526816	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529067	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529067	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529067	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529067	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529067	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529067	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529067	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529067	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529067	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560558	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560558	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560558	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560558	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560558	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560558	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560558	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560558	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560558	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560398	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560398	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560398	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000560398	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560398	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560398	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560398	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560398	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000560398	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529952	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529952	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529952	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000529952	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529952	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529952	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529952	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529952	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000529952	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000524801	ENST00000389341		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000524801	ENST00000342301		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000524801	ENST00000533720		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3CDS	ENST00000524801	ENST00000526816		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000524801	ENST00000529067		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000524801	ENST00000560558		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000524801	ENST00000560398		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000524801	ENST00000529952		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-intron	ENST00000524801	ENST00000524801		ChiTaRS3.1			BM423804	POU2F2	chr19	42596365	-	POU2F2	chr19	42596386	+
intron-3UTR	ENST00000379441	ENST00000339438		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000438362		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000358528		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000261443		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000530886		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000369530		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-5UTR	ENST00000379441	ENST00000483407		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000379441	ENST00000534699		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000339438		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000438362		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000358528		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000261443		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000530886		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000369530		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-5UTR	ENST00000179765	ENST00000483407		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000179765	ENST00000534699		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000339438		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000438362		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000358528		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000261443		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000530886		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000369530		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-5UTR	ENST00000551812	ENST00000483407		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000551812	ENST00000534699		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000339438		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000438362		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000358528		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000261443		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000530886		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000369530		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-5UTR	ENST00000549884	ENST00000483407		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000549884	ENST00000534699		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000339438		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000438362		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000358528		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000261443		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000530886		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000369530		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-5UTR	ENST00000553222	ENST00000483407		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-3UTR	ENST00000553222	ENST00000534699		ChiTaRS3.1			AW973544	BAZ2A	chr12	56992252	+	CSDE1	chr1	115260703	+
intron-intron	ENST00000427245	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000427245	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000525682	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000236342	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000526219	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000374185	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000360009	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000535742		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000546025		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000345254		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000540668		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000339365		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000411652		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-intron	ENST00000531955	ENST00000496827		ChiTaRS3.1			BI049604	DHDDS	chr1	26766321	+	SEC24C	chr10	75521350	-
intron-3CDS	ENST00000379081	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379081	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379087	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379087	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379080	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379080	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379084	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379084	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379089	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379089	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000445726	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000445726	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000297620	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000297620	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379078	ENST00000249842		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379078	ENST00000395118		ChiTaRS3.1			BE707994	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000251527	ENST00000451562		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3CDS	ENST00000251527	ENST00000468812		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000251527	ENST00000489459		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000251527	ENST00000355968		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3UTR	ENST00000251527	ENST00000480603		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3CDS	ENST00000497111	ENST00000451562		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3CDS	ENST00000497111	ENST00000468812		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000497111	ENST00000489459		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000497111	ENST00000355968		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3UTR	ENST00000497111	ENST00000480603		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3CDS	ENST00000435514	ENST00000451562		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3CDS	ENST00000435514	ENST00000468812		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000435514	ENST00000489459		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-5UTR	ENST00000435514	ENST00000355968		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-3UTR	ENST00000435514	ENST00000480603		ChiTaRS3.1			BC001224	ESYT2	chr7	158622163	+	PPIA	chr7	44839045	+
intron-intron	ENST00000357668	ENST00000426342		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000357668	ENST00000399232		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000357668	ENST00000399222		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000357668	ENST00000357362		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000357668	ENST00000439988		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000357668	ENST00000472499		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000426342		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000399232		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000399222		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000357362		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000439988		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000518721	ENST00000472499		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000426342		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000399232		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000399222		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000357362		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000439988		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-intron	ENST00000520625	ENST00000472499		ChiTaRS3.1			BE699544	ASAP1	chr8	131065893	+	MDGA2	chr14	48091643	+
intron-3CDS	ENST00000393868	ENST00000393868		ChiTaRS3.1			BM968054	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-intron	ENST00000393868	ENST00000491123		ChiTaRS3.1			BM968054	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-3CDS	ENST00000491123	ENST00000393868		ChiTaRS3.1			BM968054	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-intron	ENST00000491123	ENST00000491123		ChiTaRS3.1			BM968054	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
Frame-shit	ENST00000262325	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000262325	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
Frame-shit	ENST00000592545	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000592545	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
Frame-shit	ENST00000538556	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000538556	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
Frame-shit	ENST00000312678	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000312678	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
Frame-shit	ENST00000589344	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000589344	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
Frame-shit	ENST00000537622	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
5CDS-intron	ENST00000537622	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
3UTR-3CDS	ENST00000545922	ENST00000322644		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
3UTR-intron	ENST00000545922	ENST00000572844		ChiTaRS3.1			BI022194	AP2B1	chr17	33951591	-	POLR2A	chr17	7403972	+
intron-intron	ENST00000359979	ENST00000359979		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000359979	ENST00000372088		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000359979	ENST00000224756		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000359979	ENST00000494144		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000359979	ENST00000543283		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000372088	ENST00000359979		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000372088	ENST00000372088		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000372088	ENST00000224756		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000372088	ENST00000494144		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000372088	ENST00000543283		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000224756	ENST00000359979		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000224756	ENST00000372088		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000224756	ENST00000224756		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000224756	ENST00000494144		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000224756	ENST00000543283		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000494144	ENST00000359979		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000494144	ENST00000372088		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000494144	ENST00000224756		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000494144	ENST00000494144		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000494144	ENST00000543283		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000543283	ENST00000359979		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000543283	ENST00000372088		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000543283	ENST00000224756		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000543283	ENST00000494144		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
intron-intron	ENST00000543283	ENST00000543283		ChiTaRS3.1			DN915414	CCSER2	chr10	86198268	-	CCSER2	chr10	86237420	-
3UTR-3CDS	ENST00000382456	ENST00000382456		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000382456	ENST00000411763		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000382456	ENST00000292807		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000382456	ENST00000439647		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3UTR	ENST00000382456	ENST00000461733		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3CDS	ENST00000411763	ENST00000382456		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3CDS	ENST00000411763	ENST00000411763		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3CDS	ENST00000411763	ENST00000292807		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3CDS	ENST00000411763	ENST00000439647		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3UTR	ENST00000411763	ENST00000461733		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000292807	ENST00000382456		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000292807	ENST00000411763		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000292807	ENST00000292807		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000292807	ENST00000439647		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3UTR	ENST00000292807	ENST00000461733		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000439647	ENST00000382456		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000439647	ENST00000411763		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000439647	ENST00000292807		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000439647	ENST00000439647		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3UTR	ENST00000439647	ENST00000461733		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000461733	ENST00000382456		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000461733	ENST00000411763		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000461733	ENST00000292807		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3CDS	ENST00000461733	ENST00000439647		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
3UTR-3UTR	ENST00000461733	ENST00000461733		ChiTaRS3.1			BM690684	AP2M1	chr3	183901820	-	AP2M1	chr3	183901388	+
intron-3UTR	ENST00000331738	ENST00000331738		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-3UTR	ENST00000331738	ENST00000354654		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-5UTR	ENST00000331738	ENST00000392442		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-3UTR	ENST00000354654	ENST00000331738		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-3UTR	ENST00000354654	ENST00000354654		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-5UTR	ENST00000354654	ENST00000392442		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-3UTR	ENST00000392442	ENST00000331738		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-3UTR	ENST00000392442	ENST00000354654		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-5UTR	ENST00000392442	ENST00000392442		ChiTaRS3.1			CA314484	RSRC2	chr12	123001850	+	RSRC2	chr12	122989894	+
intron-intron	ENST00000343605	ENST00000536656		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000343605	ENST00000377346		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000343605	ENST00000484851		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000343605	ENST00000361110		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000343605	ENST00000543390		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000300385	ENST00000536656		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000300385	ENST00000377346		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000300385	ENST00000484851		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000300385	ENST00000361110		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000300385	ENST00000543390		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000406566	ENST00000536656		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000406566	ENST00000377346		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000406566	ENST00000484851		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000406566	ENST00000361110		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
intron-intron	ENST00000406566	ENST00000543390		ChiTaRS3.1			BE181134	SLC35E4	chr22	31033308	+	PIK3CD	chr1	9738510	-
Frame-shit	ENST00000395891	ENST00000395891		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
Frame-shit	ENST00000395891	ENST00000453890		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
5CDS-intron	ENST00000395891	ENST00000471043		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
Frame-shit	ENST00000453890	ENST00000395891		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
Frame-shit	ENST00000453890	ENST00000453890		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
5CDS-intron	ENST00000453890	ENST00000471043		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
intron-3CDS	ENST00000471043	ENST00000395891		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
intron-3CDS	ENST00000471043	ENST00000453890		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
intron-intron	ENST00000471043	ENST00000471043		ChiTaRS3.1			AW895684	HECW1	chr7	43581597	+	HECW1	chr7	43495894	+
Frame-shit	ENST00000323060	ENST00000263284		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000323060	ENST00000595358		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000323060	ENST00000536603		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000323060	ENST00000594087		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
5CDS-intron	ENST00000323060	ENST00000601763		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000263275	ENST00000263284		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000263275	ENST00000595358		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000263275	ENST00000536603		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
Frame-shit	ENST00000263275	ENST00000594087		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
5CDS-intron	ENST00000263275	ENST00000601763		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
intron-3CDS	ENST00000544371	ENST00000263284		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
intron-3CDS	ENST00000544371	ENST00000595358		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
intron-3CDS	ENST00000544371	ENST00000536603		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
intron-3CDS	ENST00000544371	ENST00000594087		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
intron-intron	ENST00000544371	ENST00000601763		ChiTaRS3.1			DB456774	OPA3	chr19	46087880	-	CCDC61	chr19	46519952	+
In-frame	ENST00000367545	ENST00000367545		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
5CDS-intron	ENST00000367545	ENST00000367526		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
5CDS-intron	ENST00000367545	ENST00000480333		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-3CDS	ENST00000367526	ENST00000367545		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-intron	ENST00000367526	ENST00000367526		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-intron	ENST00000367526	ENST00000480333		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-3CDS	ENST00000480333	ENST00000367545		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-intron	ENST00000480333	ENST00000367526		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
intron-intron	ENST00000480333	ENST00000480333		ChiTaRS3.1			BF086464	UTRN	chr6	144837955	-	UTRN	chr6	144860496	-
5CDS-5UTR	ENST00000343289	ENST00000265277		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-5UTR	ENST00000343289	ENST00000369452		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-intron	ENST00000343289	ENST00000489390		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-5UTR	ENST00000404739	ENST00000265277		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-5UTR	ENST00000404739	ENST00000369452		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-intron	ENST00000404739	ENST00000489390		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-5UTR	ENST00000369857	ENST00000265277		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-5UTR	ENST00000369857	ENST00000369452		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-intron	ENST00000369857	ENST00000489390		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-5UTR	ENST00000423468	ENST00000265277		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-5UTR	ENST00000423468	ENST00000369452		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-intron	ENST00000423468	ENST00000489390		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-5UTR	ENST00000470299	ENST00000265277		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-5UTR	ENST00000470299	ENST00000369452		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
5CDS-intron	ENST00000470299	ENST00000489390		ChiTaRS3.1			DA677984	NT5C2	chr10	104934614	-	SHOC2	chr10	112723882	+
intron-intron	ENST00000554719	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000554719	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000554719	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000554719	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000335750	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000335750	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000335750	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000335750	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000557594	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000557594	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000557594	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000557594	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000281127	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000281127	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000281127	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000281127	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000428277	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000428277	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000428277	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000428277	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000556003	ENST00000314358		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000556003	ENST00000394866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000556003	ENST00000542866		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000556003	ENST00000508386		ChiTaRS3.1			BE927664	NRXN3	chr14	79784488	+	KDM3B	chr5	137722904	-
intron-intron	ENST00000317147	ENST00000356206		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000317147	ENST00000521321		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000317147	ENST00000358689		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000317147	ENST00000417069		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569240	ENST00000356206		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569240	ENST00000521321		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569240	ENST00000358689		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569240	ENST00000417069		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000441024	ENST00000356206		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000441024	ENST00000521321		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000441024	ENST00000358689		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000441024	ENST00000417069		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569732	ENST00000356206		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569732	ENST00000521321		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569732	ENST00000358689		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000569732	ENST00000417069		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000245138	ENST00000356206		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000245138	ENST00000521321		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000245138	ENST00000358689		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-intron	ENST00000245138	ENST00000417069		ChiTaRS3.1			BE932194	CNOT1	chr16	58589764	+	ENTPD4	chr8	23299520	+
intron-3UTR	ENST00000339208	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000339208	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000339208	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000339208	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000346661	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000346661	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000346661	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000346661	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000345615	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000345615	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000345615	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000345615	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000502449	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000502449	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000502449	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000502449	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000591288	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000591288	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000591288	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000591288	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000394378	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000394378	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000394378	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000394378	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000585472	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000585472	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000585472	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000585472	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000588194	ENST00000292205		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000588194	ENST00000368474		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000588194	ENST00000368471		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-intron	ENST00000588194	ENST00000471068		ChiTaRS3.1			BE709734	SYNRG	chr17	35896889	+	ADAR	chr1	154556734	-
intron-3UTR	ENST00000249760	ENST00000249760		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000249760	ENST00000490194		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000249760	ENST00000487418		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000249760	ENST00000479013		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000490194	ENST00000249760		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000490194	ENST00000490194		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000490194	ENST00000487418		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000490194	ENST00000479013		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000487418	ENST00000249760		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000487418	ENST00000490194		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000487418	ENST00000487418		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000487418	ENST00000479013		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000479013	ENST00000249760		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000479013	ENST00000490194		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000479013	ENST00000487418		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-3UTR	ENST00000479013	ENST00000479013		ChiTaRS3.1			BC037304	IVD	chr1	84545407	+	IVD	chr15	40711638	+
intron-intron	ENST00000441293	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000441293	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000314728	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000347697	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395618	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000575595	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395620	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000395626	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000441293		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000314728		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000347697		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000395618		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000575595		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000395620		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000395626		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000571254	ENST00000571254		ChiTaRS3.1			BF351514	EPN2	chr17	19162003	-	EPN2	chr17	19162449	+
intron-intron	ENST00000265293	ENST00000400959		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000367025		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000367026		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000367024		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000010338		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000367023		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000477431		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000265293	ENST00000467830		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000400959		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000367025		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000367026		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000367024		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000010338		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000367023		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000477431		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000521089	ENST00000467830		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000400959		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000367025		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000367026		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000367024		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000010338		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000367023		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000477431		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000522140	ENST00000467830		ChiTaRS3.1			BE717054	WWC1	chr5	167769263	+	TRAF3IP3	chr1	209953196	-
intron-intron	ENST00000287912	ENST00000287912		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000401878		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000392759		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000486747		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000287912	ENST00000341148		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000287912		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000401878		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000392759		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000486747		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000401878	ENST00000341148		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000287912		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000401878		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000392759		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000486747		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000392759	ENST00000341148		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000287912		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000401878		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000392759		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000486747		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000486747	ENST00000341148		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000287912		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000401878		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000392759		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000486747		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000341148	ENST00000341148		ChiTaRS3.1			BI019164	RBM33	chr7	155507417	-	RBM33	chr7	155507655	+
intron-intron	ENST00000368416	ENST00000239926		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368416	ENST00000421631		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368416	ENST00000509812		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368416	ENST00000515645		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368417	ENST00000239926		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368417	ENST00000421631		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368417	ENST00000509812		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000368417	ENST00000515645		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000546092	ENST00000239926		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000546092	ENST00000421631		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000546092	ENST00000509812		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000546092	ENST00000515645		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000545433	ENST00000239926		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000545433	ENST00000421631		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000545433	ENST00000509812		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000545433	ENST00000515645		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000476571	ENST00000239926		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000476571	ENST00000421631		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000476571	ENST00000509812		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000476571	ENST00000515645		ChiTaRS3.1			R15394	NKAIN2	chr6	124303917	+	MYOT	chr5	137088502	-
intron-intron	ENST00000261879	ENST00000261879		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000261879	ENST00000380343		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000261879	ENST00000560716		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000380343	ENST00000261879		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000380343	ENST00000380343		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000380343	ENST00000560716		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000560716	ENST00000261879		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000560716	ENST00000380343		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000560716	ENST00000560716		ChiTaRS3.1			BF510174	APH1B	chr15	63575486	+	APH1B	chr15	63573273	+
intron-intron	ENST00000288602	ENST00000288602		ChiTaRS3.1			AW860004	BRAF	chr7	140609919	-	BRAF	chr7	140610530	-
5UTR-3CDS	ENST00000439128	ENST00000543470		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000439128	ENST00000366960		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000439128	ENST00000366959		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000439128	ENST00000543354		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000439128	ENST00000490299		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000543470		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000366960		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000511633	ENST00000366959		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000511633	ENST00000543354		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000511633	ENST00000490299		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000543470		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000366960		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000510533	ENST00000366959		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000510533	ENST00000543354		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000510533	ENST00000490299		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000543470		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000366960		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000507142	ENST00000366959		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000507142	ENST00000543354		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000507142	ENST00000490299		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000543470		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000366960		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3CDS	ENST00000512193	ENST00000366959		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000512193	ENST00000543354		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
5UTR-3UTR	ENST00000512193	ENST00000490299		ChiTaRS3.1			BI596864	NEK1	chr4	170533170	-	RPS6KC1	chr1	213415910	+
intron-intron	ENST00000333151	ENST00000333651		ChiTaRS3.1			DA559284	HIST1H2AJ	chr6	27782083	-	HMG20B	chr19	3572994	+
intron-intron	ENST00000333151	ENST00000585741		ChiTaRS3.1			DA559284	HIST1H2AJ	chr6	27782083	-	HMG20B	chr19	3572994	+
intron-intron	ENST00000339514	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000339514	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000339514	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000339514	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000339514	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000339514	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392318	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000304164	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000392316	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000439065	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000374399		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000003912		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000358028		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000339255		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000428131		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
intron-intron	ENST00000496992	ENST00000488155		ChiTaRS3.1			BE819004	MYO1B	chr2	192261489	-	NIPAL3	chr1	24785524	-
5CDS-intron	ENST00000263238	ENST00000409556		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000263238	ENST00000312912		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000263238	ENST00000409064		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000263238	ENST00000542128		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000263238	ENST00000485171		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000536059	ENST00000409556		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000536059	ENST00000312912		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000536059	ENST00000409064		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000536059	ENST00000542128		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000536059	ENST00000485171		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000535589	ENST00000409556		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000535589	ENST00000312912		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000535589	ENST00000409064		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000535589	ENST00000542128		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
5CDS-intron	ENST00000535589	ENST00000485171		ChiTaRS3.1			BE695584	ACTR3	chr2	114685026	+	KDM3A	chr2	86687147	+
intron-intron	ENST00000375643	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375643	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375629	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375629	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000443024	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000443024	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000447699	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000447699	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375627	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375627	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000474340	ENST00000409535		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000474340	ENST00000296477		ChiTaRS3.1			BF360044	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000249299	ENST00000249299		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-3UTR	ENST00000249299	ENST00000424702		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-intron	ENST00000249299	ENST00000422760		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
3UTR-intron	ENST00000424702	ENST00000249299		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
3UTR-3UTR	ENST00000424702	ENST00000424702		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
3UTR-intron	ENST00000424702	ENST00000422760		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-intron	ENST00000422760	ENST00000249299		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-3UTR	ENST00000422760	ENST00000424702		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-intron	ENST00000422760	ENST00000422760		ChiTaRS3.1			DW466314	NAA38	chr7	117831471	+	NAA38	chr7	117830796	+
intron-intron	ENST00000539801	ENST00000233047		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000539801	ENST00000572258		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000539801	ENST00000574092		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000539801	ENST00000261388		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000539801	ENST00000451578		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000539801	ENST00000572599		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000233047		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000572258		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000574092		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000261388		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000451578		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381652	ENST00000572599		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000233047		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000572258		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000574092		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000261388		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000451578		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000544510	ENST00000572599		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000233047		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000572258		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000574092		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000261388		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000451578		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000487310	ENST00000572599		ChiTaRS3.1			CN414364	JAK2	chr9	4987709	-	TMEM159	chr16	21187258	+
intron-intron	ENST00000381227	ENST00000452647		ChiTaRS3.1			BI025984	POLR2B	chr4	57896687	+	TSTD3	chr6	99991093	+
intron-intron	ENST00000431623	ENST00000452647		ChiTaRS3.1			BI025984	POLR2B	chr4	57896687	+	TSTD3	chr6	99991093	+
intron-intron	ENST00000441246	ENST00000452647		ChiTaRS3.1			BI025984	POLR2B	chr4	57896687	+	TSTD3	chr6	99991093	+
intron-intron	ENST00000314595	ENST00000452647		ChiTaRS3.1			BI025984	POLR2B	chr4	57896687	+	TSTD3	chr6	99991093	+
intron-intron	ENST00000510355	ENST00000452647		ChiTaRS3.1			BI025984	POLR2B	chr4	57896687	+	TSTD3	chr6	99991093	+
5UTR-intron	ENST00000265062	ENST00000290200		ChiTaRS3.1			BF223364	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-intron	ENST00000482525	ENST00000290200		ChiTaRS3.1			BF223364	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-intron	ENST00000485280	ENST00000290200		ChiTaRS3.1			BF223364	RAB7A	chr3	128445038	-	IL10RB	chr21	34637311	+
intron-intron	ENST00000285873	ENST00000519416		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000520615		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000443286		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000520340		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000518415		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000522752		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000348567		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000330691		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000317827		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000379931		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000276520		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000520973		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-intron	ENST00000285873	ENST00000520611		ChiTaRS3.1			BF445444	GEMIN5	chr5	154312179	+	TACC1	chr8	38598673	-
intron-3UTR	ENST00000374490	ENST00000374490		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000374490	ENST00000436439		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000374490	ENST00000374483		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-intron	ENST00000374490	ENST00000509389		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000436439	ENST00000374490		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000436439	ENST00000436439		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000436439	ENST00000374483		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-intron	ENST00000436439	ENST00000509389		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000374483	ENST00000374490		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000374483	ENST00000436439		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000374483	ENST00000374483		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-intron	ENST00000374483	ENST00000509389		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000509389	ENST00000374490		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000509389	ENST00000436439		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-3UTR	ENST00000509389	ENST00000374483		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-intron	ENST00000509389	ENST00000509389		ChiTaRS3.1			BF749404	HMGCL	chr1	24130950	+	HMGCL	chr1	24128619	+
intron-intron	ENST00000439616	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000439616	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000443864	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000447398	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000449767	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000444676	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000222673	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000543843	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000439616		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000443864		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000447398		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000449767		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000444676		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000222673		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000543843		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000459672	ENST00000459672		ChiTaRS3.1			BE164304	OGDH	chr7	44676764	-	OGDH	chr7	44676616	+
intron-intron	ENST00000308664	ENST00000429964		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000308664	ENST00000506784		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000308664	ENST00000360066		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000308664	ENST00000509056		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000395494	ENST00000429964		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000395494	ENST00000506784		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000395494	ENST00000360066		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000395494	ENST00000509056		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000539276	ENST00000429964		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000539276	ENST00000506784		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000539276	ENST00000360066		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000539276	ENST00000509056		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000550248	ENST00000429964		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000550248	ENST00000506784		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000550248	ENST00000360066		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000550248	ENST00000509056		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000552636	ENST00000429964		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000552636	ENST00000506784		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000552636	ENST00000360066		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000552636	ENST00000509056		ChiTaRS3.1			AW818544	ATP2A2	chr12	110723976	-	CDK18	chr1	205477280	-
intron-intron	ENST00000388890	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000388890	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000323510	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000483173	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000467963	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000435709	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000264057		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000409813		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-intron	ENST00000494422	ENST00000489613		ChiTaRS3.1			BM150804	BRD9	chr5	863953	+	DGKD	chr2	234373643	-
intron-3CDS	ENST00000379249	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379249	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379249	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379249	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379249	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379249	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379264	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379264	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379264	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379264	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379264	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379272	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379272	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379272	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379272	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379272	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379255	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379255	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379255	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379255	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379255	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000296869	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000296869	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000296869	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000296869	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000296869	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379246	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379246	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379246	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379246	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379246	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379244	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379244	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379244	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379244	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379244	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000544770	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000544770	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000544770	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000544770	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000544770	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000543479	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000543479	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000543479	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000543479	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000543479	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000477640	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000477640	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000477640	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000477640	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000477640	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000357096	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000357096	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000357096	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000357096	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000357096	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000379240	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379240	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379240	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379240	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000379240	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379249		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379264		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379272		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379255		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000296869		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379246		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000379244		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000544770		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-3CDS	ENST00000431707	ENST00000543479		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000431707	ENST00000477640		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000431707	ENST00000357096		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000431707	ENST00000379240		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
intron-intron	ENST00000431707	ENST00000431707		ChiTaRS3.1			BE766684	ACSL6	chr5	131325201	+	ACSL6	chr5	131324603	-
5CDS-intron	ENST00000262305	ENST00000262305		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000457159		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000450428		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000262305		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000457159		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000450428		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000262305		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000457159		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000450428		ChiTaRS3.1			BM914094	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
intron-3CDS	ENST00000368882	ENST00000368882		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000368882	ENST00000368885		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000368882	ENST00000451850		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000368882	ENST00000368877		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000368882	ENST00000368876		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368885	ENST00000368882		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368885	ENST00000368885		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368885	ENST00000451850		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368885	ENST00000368877		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368885	ENST00000368876		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000451850	ENST00000368882		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000451850	ENST00000368885		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000451850	ENST00000451850		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000451850	ENST00000368877		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3CDS	ENST00000451850	ENST00000368876		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368877	ENST00000368882		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368877	ENST00000368885		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368877	ENST00000451850		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368877	ENST00000368877		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368877	ENST00000368876		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368876	ENST00000368882		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368876	ENST00000368885		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368876	ENST00000451850		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368876	ENST00000368877		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
In-frame	ENST00000368876	ENST00000368876		ChiTaRS3.1			BE181974	AMD1	chr6	111210097	-	AMD1	chr6	111214224	+
intron-3UTR	ENST00000392485	ENST00000392485		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000392485	ENST00000359995		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000392485	ENST00000508921		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000359995	ENST00000392485		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000359995	ENST00000359995		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000359995	ENST00000508921		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000508921	ENST00000392485		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000508921	ENST00000359995		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
intron-3UTR	ENST00000508921	ENST00000508921		ChiTaRS3.1			CB250684	SRSF2	chr17	74731081	+	SRSF2	chr17	74731241	-
3UTR-3UTR	ENST00000404039	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000404039	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000404039	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000404039	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000404039	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000404039	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000406326	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000406326	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000406326	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000406326	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000406326	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000406326	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000377770	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000377770	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000377770	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000377770	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000377770	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000377770	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000332007	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000332007	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000332007	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-3UTR	ENST00000332007	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000332007	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
3UTR-intron	ENST00000332007	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000496611	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000496611	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000496611	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000496611	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000496611	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000496611	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000427557	ENST00000404039		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000427557	ENST00000406326		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000427557	ENST00000377770		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-3UTR	ENST00000427557	ENST00000332007		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000427557	ENST00000496611		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000427557	ENST00000427557		ChiTaRS3.1			BF348324	DPP6	chr7	154684642	-	DPP6	chr7	154684659	+
intron-intron	ENST00000493293	ENST00000493293		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-3UTR	ENST00000493293	ENST00000264144		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-intron	ENST00000493293	ENST00000461729		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
3UTR-intron	ENST00000264144	ENST00000493293		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
3UTR-3UTR	ENST00000264144	ENST00000264144		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
3UTR-intron	ENST00000264144	ENST00000461729		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-intron	ENST00000461729	ENST00000493293		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-3UTR	ENST00000461729	ENST00000264144		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-intron	ENST00000461729	ENST00000461729		ChiTaRS3.1			BE712704	LAMC2	chr1	183212749	-	LAMC2	chr1	183212871	+
intron-3CDS	ENST00000373566	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373566	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373566	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373566	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373566	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373566	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000373566	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000373566	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000373563	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000373563	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000373563	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409480	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409480	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409480	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409547	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409547	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409547	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409196	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409196	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409196	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000409451	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409451	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000409451	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000482666	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000482666	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000482666	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000373566		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000373563		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000409480		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000409547		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000409196		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-3CDS	ENST00000452341	ENST00000409451		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000452341	ENST00000482666		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000452341	ENST00000452341		ChiTaRS3.1			BE873294	GIGYF2	chr2	233721506	-	GIGYF2	chr2	233721543	+
intron-intron	ENST00000545168	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000545168	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376989	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000238018	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000376986	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000358399	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000540693		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000337343		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000379274		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000261491		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000536612		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000498255		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
intron-intron	ENST00000477618	ENST00000538674		ChiTaRS3.1			AW818534	GDA	chr9	74822564	-	DGKH	chr13	42774590	+
3UTR-3CDS	ENST00000409785	ENST00000409785		ChiTaRS3.1			CB241984	KCMF1	chr2	85280661	-	KCMF1	chr2	85280455	+
intron-intron	ENST00000390168	ENST00000301821		ChiTaRS3.1			BC010054	H19	chr11	2018080	+	RPSA	chr19	24009905	+
intron-intron	ENST00000390168	ENST00000443003		ChiTaRS3.1			BC010054	H19	chr11	2018080	+	RPSA	chr19	24009905	+
intron-intron	ENST00000390168	ENST00000478027		ChiTaRS3.1			BC010054	H19	chr11	2018080	+	RPSA	chr19	24009905	+
intron-intron	ENST00000535420	ENST00000458420		ChiTaRS3.1			AW998044	ZBTB7B	chr1	154982650	+	CLSTN2	chr3	139932471	+
intron-intron	ENST00000368426	ENST00000458420		ChiTaRS3.1			AW998044	ZBTB7B	chr1	154982650	+	CLSTN2	chr3	139932471	+
intron-intron	ENST00000487542	ENST00000458420		ChiTaRS3.1			AW998044	ZBTB7B	chr1	154982650	+	CLSTN2	chr3	139932471	+
intron-intron	ENST00000417934	ENST00000458420		ChiTaRS3.1			AW998044	ZBTB7B	chr1	154982650	+	CLSTN2	chr3	139932471	+
intron-intron	ENST00000292176	ENST00000458420		ChiTaRS3.1			AW998044	ZBTB7B	chr1	154982650	+	CLSTN2	chr3	139932471	+
intron-3UTR	ENST00000464611	ENST00000209875		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-intron	ENST00000464611	ENST00000439541		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-intron	ENST00000464611	ENST00000550411		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-3UTR	ENST00000331789	ENST00000209875		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-intron	ENST00000331789	ENST00000439541		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-intron	ENST00000331789	ENST00000550411		ChiTaRS3.1			DA184434	ACTB	chr7	5568981	-	CBX5	chr12	54625118	-
intron-intron	ENST00000534968	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000534968	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000534968	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368054	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368054	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000311224	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000311224	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368048	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368048	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368051	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368051	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000376656		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000540416		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396551		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396548		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000376659		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000396547		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549051		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552805		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549841		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550432		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000458607		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550581		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000446397		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000431272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000424575		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549269		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546886		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547030		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546867		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000440117		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552950		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000449318		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000414015		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000413715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552165		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547272		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548002		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548680		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000438076		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000551862		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000430502		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000433900		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000451715		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550625		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550282		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000549959		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547598		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000400644		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000550618		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383601		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383603		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000383602		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000548540		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552047		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000547462		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552337		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000438859		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552136		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000451132		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000450778		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000445206		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000546617		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000550063		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000552594		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000552520		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000452705		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-intron	ENST00000368047	ENST00000552257		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000443109		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000419790		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3UTR	ENST00000368047	ENST00000426469		ChiTaRS3.1			BE552054	CD84	chr1	160534608	+	TRIM39	chr6	1640532	-
intron-3CDS	ENST00000510123	ENST00000222286		ChiTaRS3.1			DB108304	NOP16	chr5	175815301	-	GAPDHS	chr19	36034639	-
intron-3CDS	ENST00000389158	ENST00000222286		ChiTaRS3.1			DB108304	NOP16	chr5	175815301	-	GAPDHS	chr19	36034639	-
intron-3CDS	ENST00000507413	ENST00000222286		ChiTaRS3.1			DB108304	NOP16	chr5	175815301	-	GAPDHS	chr19	36034639	-
intron-3CDS	ENST00000509257	ENST00000222286		ChiTaRS3.1			DB108304	NOP16	chr5	175815301	-	GAPDHS	chr19	36034639	-
3UTR-intron	ENST00000366730	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366730	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366730	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000391865	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000391865	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366726	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366726	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000312726	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000312726	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-5UTR	ENST00000366728	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366728	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366723	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366723	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-5UTR	ENST00000366722	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000366722	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366721	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366721	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366718	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366718	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000470040	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000470040	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366730		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000391865		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-5UTR	ENST00000366716	ENST00000312726		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366728		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366723		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366722		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366721		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366718		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000470040		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
3UTR-intron	ENST00000366716	ENST00000366716		ChiTaRS3.1			BF766114	GUK1	chr1	228336409	+	GUK1	chr1	228328849	+
5CDS-intron	ENST00000397609	ENST00000254658		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
5CDS-intron	ENST00000397609	ENST00000254657		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
5CDS-intron	ENST00000397609	ENST00000440245		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
5CDS-intron	ENST00000397609	ENST00000355768		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
intron-intron	ENST00000491535	ENST00000254658		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
intron-intron	ENST00000491535	ENST00000254657		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
intron-intron	ENST00000491535	ENST00000440245		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
intron-intron	ENST00000491535	ENST00000355768		ChiTaRS3.1			BF508504	FAM98B	chr15	38776781	-	PER2	chr2	239173954	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BF084924	MALAT1	chr11	65272267	+	MALAT1	chr11	65272105	-
intron-intron	ENST00000383699	ENST00000383699		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000407528		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000405615		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000485126		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000383699		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000407528		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000405615		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000485126		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000383699		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000407528		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000405615		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000485126		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000383699		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000407528		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000405615		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000485126		ChiTaRS3.1			AW898064	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
3UTR-intron	ENST00000478379	ENST00000384891		ChiTaRS3.1			BM987104	TCAM1P	chr17	61938109	-	MIR205HG	chr1	209603644	-
intron-intron	ENST00000523094	ENST00000523094		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523094	ENST00000530742		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523094	ENST00000296951		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523094	ENST00000411809		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523094	ENST00000523908		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000530742	ENST00000523094		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000530742	ENST00000530742		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000530742	ENST00000296951		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000530742	ENST00000411809		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000530742	ENST00000523908		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000296951	ENST00000523094		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000296951	ENST00000530742		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000296951	ENST00000296951		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000296951	ENST00000411809		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000296951	ENST00000523908		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000411809	ENST00000523094		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000411809	ENST00000530742		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000411809	ENST00000296951		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000411809	ENST00000411809		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000411809	ENST00000523908		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523908	ENST00000523094		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523908	ENST00000530742		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523908	ENST00000296951		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523908	ENST00000411809		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000523908	ENST00000523908		ChiTaRS3.1			AW993884	CLINT1	chr5	157270382	+	CLINT1	chr5	157269494	+
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266524	EWSR1	chr22	29684890	+	FLI1	chr11	128646068	+
intron-3CDS	ENST00000258381	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258381	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258381	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258381	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258381	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000258381	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000258381	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000358662	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000358662	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000358662	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000358662	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000358662	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000358662	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000358662	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000392048	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000392048	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000392048	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000392048	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000392048	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000392048	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000392048	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258382	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258382	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258382	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258382	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000258382	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000258382	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000258382	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000540870	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000540870	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000540870	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000540870	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000540870	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000540870	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000540870	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000338556	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000338556	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000338556	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000338556	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000338556	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000338556	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000338556	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000486146	ENST00000258381		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000486146	ENST00000358662		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000486146	ENST00000392048		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000486146	ENST00000258382		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000486146	ENST00000540870		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000486146	ENST00000338556		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-intron	ENST00000486146	ENST00000486146		ChiTaRS3.1			BF511614	SP110	chr2	231050762	+	SP110	chr2	231067438	-
intron-3CDS	ENST00000316649	ENST00000421974		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000456496		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000479613		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000606024		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000316649	ENST00000464662		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000316649	ENST00000425642		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000316649	ENST00000495408		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000367748	ENST00000421974		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000456496		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000479613		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000606024		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367748	ENST00000464662		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367748	ENST00000425642		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367748	ENST00000495408		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000541547	ENST00000421974		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000456496		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000479613		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000606024		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000541547	ENST00000464662		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000541547	ENST00000425642		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000541547	ENST00000495408		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000468393	ENST00000421974		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000456496		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000479613		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000606024		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000468393	ENST00000464662		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000468393	ENST00000425642		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000468393	ENST00000495408		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3CDS	ENST00000367746	ENST00000421974		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000456496		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000479613		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000606024		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367746	ENST00000464662		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-3UTR	ENST00000367746	ENST00000425642		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
intron-intron	ENST00000367746	ENST00000495408		ChiTaRS3.1			BE645384	IL20RA	chr6	137322814	+	ATP6V0E2	chr7	149576634	-
In-frame	ENST00000248444	ENST00000248444		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000248444	ENST00000392114		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000248444	ENST00000440053		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000248444		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
In-frame	ENST00000392114	ENST00000392114		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
5CDS-intron	ENST00000392114	ENST00000440053		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000248444		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3CDS	ENST00000440053	ENST00000392114		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-intron	ENST00000440053	ENST00000440053		ChiTaRS3.1			BE512894	VIL1	chr2	219305454	-	VIL1	chr2	219305552	+
intron-3UTR	ENST00000262189	ENST00000262189		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000262189	ENST00000355193		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000262189	ENST00000485655		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-intron	ENST00000262189	ENST00000485241		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000355193	ENST00000262189		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000355193	ENST00000355193		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000355193	ENST00000485655		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-intron	ENST00000355193	ENST00000485241		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485655	ENST00000262189		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485655	ENST00000355193		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485655	ENST00000485655		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-intron	ENST00000485655	ENST00000485241		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485241	ENST00000262189		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485241	ENST00000355193		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-3UTR	ENST00000485241	ENST00000485655		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-intron	ENST00000485241	ENST00000485241		ChiTaRS3.1			CA310844	KMT2C	chr7	151832344	+	KMT2C	chr7	151832508	-
intron-intron	ENST00000390381	ENST00000579585		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
intron-intron	ENST00000390381	ENST00000584573		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
intron-intron	ENST00000390381	ENST00000361733		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
intron-intron	ENST00000390381	ENST00000361357		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
intron-intron	ENST00000390381	ENST00000577395		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
intron-intron	ENST00000390381	ENST00000577784		ChiTaRS3.1			BP325264	TRBV5-1	chr7	142470702	+	MAP3K3	chr17	61716406	+
3UTR-3UTR	ENST00000473875	ENST00000473875		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
3UTR-3UTR	ENST00000473875	ENST00000366534		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
3UTR-3UTR	ENST00000473875	ENST00000366533		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
3UTR-3UTR	ENST00000473875	ENST00000366531		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366534	ENST00000473875		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366534	ENST00000366534		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366534	ENST00000366533		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366534	ENST00000366531		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366533	ENST00000473875		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366533	ENST00000366534		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366533	ENST00000366533		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366533	ENST00000366531		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366531	ENST00000473875		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366531	ENST00000366534		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366531	ENST00000366533		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
5CDS-3UTR	ENST00000366531	ENST00000366531		ChiTaRS3.1			DN998404	C1orf101	chr1	244724176	-	C1orf101	chr1	244724247	+
intron-intron	ENST00000451940	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000451940	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000451940	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000451940	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000451940	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000456104	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000456104	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000456104	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000456104	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000456104	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433530	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433530	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000433530	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433530	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433530	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000447424	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000447424	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000447424	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000447424	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000447424	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433920	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433920	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000433920	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433920	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000433920	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000446751	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000446751	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000446751	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000446751	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000446751	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000420424	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000420424	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000420424	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000420424	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000420424	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413722	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413722	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000413722	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413722	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413722	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000417860	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000417860	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000417860	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000417860	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000417860	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413961	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413961	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000413961	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413961	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000413961	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000458739	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000458739	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000458739	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000458739	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000458739	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000366446	ENST00000529225		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000366446	ENST00000440460		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-3UTR	ENST00000366446	ENST00000389821		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000366446	ENST00000531396		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
intron-intron	ENST00000366446	ENST00000315253		ChiTaRS3.1			DA210964	NUTM2A-AS1	chr10	89048047	-	DIXDC1	chr11	111887413	+
3UTR-3CDS	ENST00000492220	ENST00000340208		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000424173		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000504921		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000514028		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000437473		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000510942		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000506554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000508569		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000514015		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-3CDS	ENST00000492220	ENST00000539796		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
3UTR-5UTR	ENST00000492220	ENST00000503554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000340208		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000424173		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000504921		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000514028		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000437473		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000510942		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000506554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000508569		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000514015		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000401000	ENST00000539796		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
5CDS-5UTR	ENST00000401000	ENST00000503554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000340208		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000424173		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000504921		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000514028		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000437473		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000510942		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000506554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000508569		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000514015		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000539519	ENST00000539796		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
5CDS-5UTR	ENST00000539519	ENST00000503554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000340208		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000424173		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000504921		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000514028		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000437473		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000510942		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000506554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000508569		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000514015		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369067	ENST00000539796		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
5CDS-5UTR	ENST00000369067	ENST00000503554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000340208		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000424173		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000504921		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000514028		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000437473		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000510942		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000506554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000508569		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000514015		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
Frame-shit	ENST00000369068	ENST00000539796		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
5CDS-5UTR	ENST00000369068	ENST00000503554		ChiTaRS3.1			DA941474	RPRD2	chr1	150390202	+	MEF2C	chr5	88047860	-
intron-intron	ENST00000561603	ENST00000381395		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000381406		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-5UTR	ENST00000561603	ENST00000416167		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000300632		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000434045		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000381392		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000381389		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000561603	ENST00000418738		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000381395		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000381406		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-5UTR	ENST00000304330	ENST00000416167		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000300632		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000434045		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000381392		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000381389		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000304330	ENST00000418738		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000381395		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000381406		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-5UTR	ENST00000568413	ENST00000416167		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000300632		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000434045		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000381392		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000381389		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-intron	ENST00000568413	ENST00000418738		ChiTaRS3.1			BE299934	RPAP1	chr15	41829164	-	IGF2	chr11	2160391	-
intron-3CDS	ENST00000335508	ENST00000335508		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000335508	ENST00000462613		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000335508	ENST00000409915		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000335508	ENST00000414963		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000335508	ENST00000487698		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-3CDS	ENST00000462613	ENST00000335508		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000462613	ENST00000462613		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000462613	ENST00000409915		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000462613	ENST00000414963		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000462613	ENST00000487698		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-3CDS	ENST00000409915	ENST00000335508		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000409915	ENST00000462613		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000409915	ENST00000409915		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000409915	ENST00000414963		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000409915	ENST00000487698		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-3CDS	ENST00000414963	ENST00000335508		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000414963	ENST00000462613		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000414963	ENST00000409915		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000414963	ENST00000414963		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000414963	ENST00000487698		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-3CDS	ENST00000487698	ENST00000335508		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000487698	ENST00000462613		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000487698	ENST00000409915		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000487698	ENST00000414963		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000487698	ENST00000487698		ChiTaRS3.1			BE166344	SF3B1	chr2	198266167	+	SF3B1	chr2	198266251	-
intron-intron	ENST00000381668	ENST00000356113		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000381668	ENST00000414170		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000381668	ENST00000299022		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000381668	ENST00000433326		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000264449	ENST00000356113		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000264449	ENST00000414170		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000264449	ENST00000299022		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000264449	ENST00000433326		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000510289	ENST00000356113		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000510289	ENST00000414170		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000510289	ENST00000299022		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000510289	ENST00000433326		ChiTaRS3.1			T89564	ATP8A1	chr4	42437489	-	LIPC	chr15	58856857	+
intron-intron	ENST00000261681	ENST00000452647		ChiTaRS3.1			BI049284	MPP5	chr14	67774205	+	TSTD3	chr6	100009276	+
intron-intron	ENST00000555925	ENST00000452647		ChiTaRS3.1			BI049284	MPP5	chr14	67774205	+	TSTD3	chr6	100009276	+
intron-intron	ENST00000554911	ENST00000452647		ChiTaRS3.1			BI049284	MPP5	chr14	67774205	+	TSTD3	chr6	100009276	+
intron-intron	ENST00000556345	ENST00000452647		ChiTaRS3.1			BI049284	MPP5	chr14	67774205	+	TSTD3	chr6	100009276	+
intron-3CDS	ENST00000316084	ENST00000316084		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000316084	ENST00000486733		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000316084	ENST00000373626		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-3CDS	ENST00000486733	ENST00000316084		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000486733	ENST00000486733		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000486733	ENST00000373626		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-3CDS	ENST00000373626	ENST00000316084		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000373626	ENST00000486733		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-5UTR	ENST00000373626	ENST00000373626		ChiTaRS3.1			BF326184	RPS4X	chrX	71493219	+	RPS4X	chrX	71495573	-
intron-intron	ENST00000369683	ENST00000399410		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000349029		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000351154		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000399408		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000345148		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000346370		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369683	ENST00000576557		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000399410		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000349029		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000351154		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000399408		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000345148		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000346370		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000369680	ENST00000576557		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000399410		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000349029		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000351154		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000399408		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000345148		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000346370		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000502935	ENST00000576557		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000399410		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000349029		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000351154		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000399408		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000345148		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000346370		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000322238	ENST00000576557		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000399410		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000349029		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000351154		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000399408		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000345148		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000346370		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000430337	ENST00000576557		ChiTaRS3.1			AW993064	XPNPEP1	chr10	111662810	+	ABCC1	chr16	16061627	+
intron-intron	ENST00000377200	ENST00000545260		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000545693		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000350537		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000346874		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374789		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374790		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374794		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374788		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000466092		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374776		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000340077		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000544292		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374773		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000377200	ENST00000374768		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000545260		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000545693		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000350537		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000346874		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374789		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374790		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374794		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374788		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000466092		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374776		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000340077		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000544292		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374773		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000340434	ENST00000374768		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000545260		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000545693		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000350537		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000346874		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374789		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374790		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374794		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374788		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000466092		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374776		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000340077		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000544292		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374773		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000472967	ENST00000374768		ChiTaRS3.1			AW847384	PTAR1	chr9	72339942	+	PARD3	chr10	34874057	-
intron-intron	ENST00000534526	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000534526	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000534526	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000534526	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000534526	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000534526	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000531134	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
3UTR-intron	ENST00000427716	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000266482	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000546442	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000525053	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000381025	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000472289	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000358136		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000356315		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000496628		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000543766		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000471923		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000473513	ENST00000543710		ChiTaRS3.1			DB304604	FGD4	chr12	32798659	-	VPS13D	chr1	12481908	-
intron-intron	ENST00000371227	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371227	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371249	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000306402	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000353505	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371246	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000347291	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000393949	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371247	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000607232	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371245	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000361941	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000277982	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000354106	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371239	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000371241	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371227		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371249		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000306402		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000353505		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371246		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000347291		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000393949		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371247		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000607232		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371245		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000361941		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000277982		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000354106		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371239		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000371241		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
intron-intron	ENST00000474353	ENST00000474353		ChiTaRS3.1			CA336984	SORBS1	chr10	97149504	+	SORBS1	chr10	97146189	-
3UTR-intron	ENST00000534336	ENST00000408771		ChiTaRS3.1			BE702364	MALAT1	chr11	65266781	+	MIR548H3	chr6	97685730	+
3UTR-3UTR	ENST00000547405	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547405	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547405	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000547405	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000452455	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000360610	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000441232	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000392934	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000547509	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000361685	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000550501	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000549145	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000553190	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000536007	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000541119	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000545503	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000361466	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000551300	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000301891		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000377585		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000377581		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000550270	ENST00000490834		ChiTaRS3.1			R16914	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3CDS	ENST00000393324	ENST00000379056		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000393324	ENST00000529421		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000393324	ENST00000530705		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000393324	ENST00000379060		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000393324	ENST00000379055		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000393324	ENST00000309246		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-3CDS	ENST00000359636	ENST00000379056		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000359636	ENST00000529421		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000359636	ENST00000530705		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000359636	ENST00000379060		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000359636	ENST00000379055		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000359636	ENST00000309246		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-3CDS	ENST00000543262	ENST00000379056		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000543262	ENST00000529421		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000543262	ENST00000530705		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000543262	ENST00000379060		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000543262	ENST00000379055		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000543262	ENST00000309246		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-3CDS	ENST00000323418	ENST00000379056		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000323418	ENST00000529421		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000323418	ENST00000530705		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000323418	ENST00000379060		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000323418	ENST00000379055		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000323418	ENST00000309246		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-3CDS	ENST00000525957	ENST00000379056		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000525957	ENST00000529421		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000525957	ENST00000530705		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000525957	ENST00000379060		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000525957	ENST00000379055		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-5UTR	ENST00000525957	ENST00000309246		ChiTaRS3.1			BE844054	ME3	chr11	86230131	-	TPT1	chr13	45912853	-
intron-3CDS	ENST00000353383	ENST00000523430		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
intron-3CDS	ENST00000353383	ENST00000265896		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
intron-3CDS	ENST00000489697	ENST00000523430		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
intron-3CDS	ENST00000489697	ENST00000265896		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
intron-3CDS	ENST00000261641	ENST00000523430		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
intron-3CDS	ENST00000261641	ENST00000265896		ChiTaRS3.1			BE183534	RAI1	chr17	17624486	+	SQLE	chr8	126021415	+
3UTR-intron	ENST00000540990	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000540990	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000540990	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000540990	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000540990	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000540990	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000536187	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000536187	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000536187	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000536187	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000536187	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000536187	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-intron	ENST00000550168	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-intron	ENST00000550168	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-intron	ENST00000550168	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-intron	ENST00000550168	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-3UTR	ENST00000550168	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
intron-3UTR	ENST00000550168	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547392	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547392	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547392	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547392	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000547392	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000547392	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000301050	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000301050	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000301050	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000301050	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000301050	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000301050	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547230	ENST00000540990		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547230	ENST00000536187		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547230	ENST00000550168		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000547230	ENST00000547392		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000547230	ENST00000301050		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-3UTR	ENST00000547230	ENST00000547230		ChiTaRS3.1			CB156174	CACNB3	chr12	49221882	-	CACNB3	chr12	49222449	+
3UTR-intron	ENST00000372600	ENST00000255557		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372600	ENST00000577615		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000372600	ENST00000268942		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000372600	ENST00000359042		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372600	ENST00000426147		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372600	ENST00000535032		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372600	ENST00000582793		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372599	ENST00000255557		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372599	ENST00000577615		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000372599	ENST00000268942		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000372599	ENST00000359042		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372599	ENST00000426147		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372599	ENST00000535032		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000372599	ENST00000582793		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000259324	ENST00000255557		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000259324	ENST00000577615		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000259324	ENST00000268942		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-3UTR	ENST00000259324	ENST00000359042		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000259324	ENST00000426147		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000259324	ENST00000535032		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
3UTR-intron	ENST00000259324	ENST00000582793		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000492784	ENST00000255557		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000492784	ENST00000577615		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-3UTR	ENST00000492784	ENST00000268942		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-3UTR	ENST00000492784	ENST00000359042		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000492784	ENST00000426147		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000492784	ENST00000535032		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000492784	ENST00000582793		ChiTaRS3.1			DR978214	LRRC8A	chr9	131679042	-	C17orf80	chr17	71244933	+
intron-intron	ENST00000609205	ENST00000376030		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000609205	ENST00000503743		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000609205	ENST00000422387		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000609205	ENST00000361144		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000609205	ENST00000400798		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000609205	ENST00000400797		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000376030		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000503743		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000422387		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000361144		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000400798		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000360270	ENST00000400797		ChiTaRS3.1			AW963054	MSN	chrX	64941655	+	KAZN	chr1	14937006	+
intron-intron	ENST00000453744	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000453744	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394801	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394803	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000394804	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000343106	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000321805	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000350435	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000338145	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000349311	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000504211	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000357194	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000505207	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000507845	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000502404	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000393232		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000353868		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000539636		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000311967		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000223190		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000393230		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000393231		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000513098	ENST00000477428		ChiTaRS3.1			CV341784	UBE2D3	chr4	103717350	+	NRF1	chr7	129269870	+
intron-intron	ENST00000354989	ENST00000397817		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000219431		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000354989	ENST00000475280		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000397817		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000219431		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000360031	ENST00000475280		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000397817		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000219431		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000376652	ENST00000475280		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000397817		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000219431		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000433259	ENST00000475280		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000397817		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000219431		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000485936	ENST00000475280		ChiTaRS3.1			EL584404	ENTPD6	chr20	25187698	+	MPG	chr16	135232	+
intron-intron	ENST00000421699	ENST00000269080		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000421699	ENST00000430352		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000421699	ENST00000586539		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000609374	ENST00000269080		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000609374	ENST00000430352		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000609374	ENST00000586539		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000490628	ENST00000269080		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000490628	ENST00000430352		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-intron	ENST00000490628	ENST00000586539		ChiTaRS3.1			BI049704	GOLGA2	chr9	131018459	-	ABCA8	chr17	66913172	-
intron-3CDS	ENST00000273308	ENST00000273308		ChiTaRS3.1			BE826144	CNPY2	chr12	56705195	+	CNPY2	chr12	56705155	-
intron-5UTR	ENST00000273308	ENST00000551720		ChiTaRS3.1			BE826144	CNPY2	chr12	56705195	+	CNPY2	chr12	56705155	-
intron-3CDS	ENST00000551720	ENST00000273308		ChiTaRS3.1			BE826144	CNPY2	chr12	56705195	+	CNPY2	chr12	56705155	-
intron-5UTR	ENST00000551720	ENST00000551720		ChiTaRS3.1			BE826144	CNPY2	chr12	56705195	+	CNPY2	chr12	56705155	-
intron-3CDS	ENST00000379081	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379081	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379087	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379087	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379080	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379080	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379084	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379084	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379089	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379089	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000445726	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000445726	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000297620	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000297620	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379078	ENST00000249842		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
intron-3CDS	ENST00000379078	ENST00000395118		ChiTaRS3.1			BE707974	FAM219A	chr9	34426791	-	ISLR	chr15	74468481	-
5CDS-intron	ENST00000369306	ENST00000465508		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000349363		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000377577		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000294401		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000542246		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
5CDS-intron	ENST00000369306	ENST00000377573		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000465508		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000349363		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000377577		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000294401		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000542246		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-intron	ENST00000537888	ENST00000377573		ChiTaRS3.1			BF664414	PEX11B	chr1	145516456	+	DNAJC11	chr1	6706052	-
intron-5UTR	ENST00000372014	ENST00000273308		ChiTaRS3.1			CN305374	MRPL14	chr6	44081927	+	CNPY2	chr12	56709766	-
intron-5UTR	ENST00000372014	ENST00000551720		ChiTaRS3.1			CN305374	MRPL14	chr6	44081927	+	CNPY2	chr12	56709766	-
In-frame	ENST00000505044	ENST00000351304		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000505044	ENST00000372080		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000433351	ENST00000351304		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000433351	ENST00000372080		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000264441	ENST00000351304		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000264441	ENST00000372080		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000545138	ENST00000351304		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
In-frame	ENST00000545138	ENST00000372080		ChiTaRS3.1			M54994	PCYOX1	chr2	70488361	-	CEL	chr9	135937365	+
intron-intron	ENST00000321063	ENST00000290219		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000321063	ENST00000381995		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000321063	ENST00000405436		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000359827	ENST00000290219		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000359827	ENST00000381995		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000359827	ENST00000405436		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000423507	ENST00000290219		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000423507	ENST00000381995		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000423507	ENST00000405436		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000378539	ENST00000290219		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000378539	ENST00000381995		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000378539	ENST00000405436		ChiTaRS3.1			BE837564	PLXNA4	chr7	131829381	-	IFNGR2	chr21	34799488	-
intron-intron	ENST00000377559	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
intron-intron	ENST00000265459	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
intron-intron	ENST00000301894	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
intron-intron	ENST00000377551	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
intron-intron	ENST00000409571	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
intron-intron	ENST00000496291	ENST00000318560		ChiTaRS3.1			BM932194	NRXN2	chr11	64374264	-	ABL1	chr9	133717316	-
3UTR-3CDS	ENST00000392335	ENST00000392335		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000535612		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000269932		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000546344		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000392335	ENST00000392336		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000392335		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000535612		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000269932		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000546344		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000535612	ENST00000392336		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000392335		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000535612		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000269932		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000546344		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
3UTR-3CDS	ENST00000269932	ENST00000392336		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000392335		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000535612		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000269932		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000546344		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000546344	ENST00000392336		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000392335		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000535612		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000269932		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000546344		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-3CDS	ENST00000392336	ENST00000392336		ChiTaRS3.1			CB156824	ARMC6	chr19	19168916	-	ARMC6	chr19	19168300	+
intron-intron	ENST00000369325	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369325	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369327	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369332	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369329	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000479630	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369325		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369327		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369332		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369329		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000479630		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000369320	ENST00000369320		ChiTaRS3.1			BF082284	MAP3K7	chr6	91269709	-	MAP3K7	chr6	91270213	-
intron-intron	ENST00000425013	ENST00000425013		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000425013	ENST00000389902		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000425013	ENST00000469375		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000389902	ENST00000425013		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000389902	ENST00000389902		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000389902	ENST00000469375		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000469375	ENST00000425013		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000469375	ENST00000389902		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000469375	ENST00000469375		ChiTaRS3.1			DA646524	RNF216	chr7	5774429	-	RNF216	chr7	5781727	-
intron-intron	ENST00000316623	ENST00000289968		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000316623	ENST00000441763		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000316623	ENST00000303665		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000316623	ENST00000575975		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000561429	ENST00000289968		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000561429	ENST00000441763		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000561429	ENST00000303665		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000561429	ENST00000575975		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000560355	ENST00000289968		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000560355	ENST00000441763		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000560355	ENST00000303665		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000560355	ENST00000575975		ChiTaRS3.1			CA435104	FBN1	chr15	48702417	+	ARHGAP17	chr16	24947310	-
intron-intron	ENST00000252674	ENST00000252674		ChiTaRS3.1			BC023524	MLLT1	chr19	6211264	-	MLLT1	chr19	6211237	+
intron-intron	ENST00000252674	ENST00000585588		ChiTaRS3.1			BC023524	MLLT1	chr19	6211264	-	MLLT1	chr19	6211237	+
intron-intron	ENST00000585588	ENST00000252674		ChiTaRS3.1			BC023524	MLLT1	chr19	6211264	-	MLLT1	chr19	6211237	+
intron-intron	ENST00000585588	ENST00000585588		ChiTaRS3.1			BC023524	MLLT1	chr19	6211264	-	MLLT1	chr19	6211237	+
intron-intron	ENST00000408742	ENST00000408742		ChiTaRS3.1			BF750194	MIR548N	chr2	179435304	-	MIR548N	chr2	179435166	+
intron-intron	ENST00000534307	ENST00000460620		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000359785		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000528414		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000538253		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000420377		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000525799		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000534307	ENST00000534519		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000460620		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000359785		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000528414		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000538253		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000420377		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000525799		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000528302	ENST00000534519		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000460620		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000359785		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000528414		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000538253		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000420377		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000525799		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
3UTR-intron	ENST00000322535	ENST00000534519		ChiTaRS3.1			BI021484	SF3B2	chr11	65836358	+	PTPN22	chr1	114382132	+
intron-intron	ENST00000341223	ENST00000458381		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000444448		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000317647		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000445023		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397206		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000421711		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000341223	ENST00000397209		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000458381		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000444448		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000317647		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000445023		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397206		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000421711		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000298159	ENST00000397209		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000458381		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000444448		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000317647		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000445023		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397206		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000421711		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000555765	ENST00000397209		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000458381		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000444448		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000317647		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000445023		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397206		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000421711		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-intron	ENST00000556161	ENST00000397209		ChiTaRS3.1			BX102624	CFL2	chr14	35180236	-	NOSTRIN	chr2	169673712	-
intron-3UTR	ENST00000340067	ENST00000340067		ChiTaRS3.1			BX114694	KCTD21	chr11	77882659	+	KCTD21	chr11	77882622	-
intron-intron	ENST00000403295	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403295	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403295	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403295	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403295	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403295	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000402135	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000233741	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000403676	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000540646	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000403295		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000402135		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000233741		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000403676		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000540646		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000481670	ENST00000481670		ChiTaRS3.1			BE694274	FANCL	chr2	58459250	+	FANCL	chr2	58425728	+
intron-intron	ENST00000350026	ENST00000264111		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000397081		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000409036		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000397087		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000538974		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000540783		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000539331		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000473043		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000350026	ENST00000535187		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000264111		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000397081		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000409036		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000397087		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000538974		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000540783		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000539331		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000473043		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000346085	ENST00000535187		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000264111		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000397081		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000409036		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000397087		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000538974		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000540783		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000539331		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000473043		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000367148	ENST00000535187		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000264111		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000397081		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000409036		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000397087		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000538974		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000540783		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000539331		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000473043		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000275248	ENST00000535187		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000264111		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000397081		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000409036		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000397087		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000538974		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000540783		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000539331		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000473043		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000478761	ENST00000535187		ChiTaRS3.1			BF762844	ARID1B	chr6	157301568	-	RAPGEF4	chr2	173765015	+
intron-intron	ENST00000399161	ENST00000303635		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000439411		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000476163		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000557126		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000473578		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000467404		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000399161	ENST00000476864		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000303635		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000439411		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000476163		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000557126		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000473578		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000467404		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000428368	ENST00000476864		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000303635		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000439411		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000476163		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000557126		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000473578		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000467404		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000407844	ENST00000476864		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000303635		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000439411		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000476163		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000557126		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000473578		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000467404		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000471668	ENST00000476864		ChiTaRS3.1			BX090934	MYT1L	chr2	2040816	+	CAMTA1	chr1	7697047	-
intron-intron	ENST00000401884	ENST00000401884		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000401884	ENST00000342631		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000401884	ENST00000405547		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000401884	ENST00000310397		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000401884	ENST00000469006		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000342631	ENST00000401884		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000342631	ENST00000342631		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000342631	ENST00000405547		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000342631	ENST00000310397		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000342631	ENST00000469006		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000405547	ENST00000401884		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000405547	ENST00000342631		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000405547	ENST00000405547		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000405547	ENST00000310397		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000405547	ENST00000469006		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000310397	ENST00000401884		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000310397	ENST00000342631		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000310397	ENST00000405547		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000310397	ENST00000310397		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000310397	ENST00000469006		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000469006	ENST00000401884		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000469006	ENST00000342631		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000469006	ENST00000405547		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000469006	ENST00000310397		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-intron	ENST00000469006	ENST00000469006		ChiTaRS3.1			BF203794	SNED1	chr2	241971533	+	SNED1	chr2	241970787	+
intron-3CDS	ENST00000242848	ENST00000242848		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000242848	ENST00000378921		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000242848	ENST00000282007		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-intron	ENST00000242848	ENST00000470308		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000378921	ENST00000242848		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000378921	ENST00000378921		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000378921	ENST00000282007		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-intron	ENST00000378921	ENST00000470308		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000282007	ENST00000242848		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000282007	ENST00000378921		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000282007	ENST00000282007		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-intron	ENST00000282007	ENST00000470308		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000470308	ENST00000242848		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000470308	ENST00000378921		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-3CDS	ENST00000470308	ENST00000282007		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
intron-intron	ENST00000470308	ENST00000470308		ChiTaRS3.1			DA779164	ZC3H13	chr13	46530854	-	ZC3H13	chr13	46542996	-
5CDS-5UTR	ENST00000262027	ENST00000412331		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5CDS-5UTR	ENST00000262027	ENST00000381683		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5CDS-intron	ENST00000262027	ENST00000406934		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5CDS-3UTR	ENST00000262027	ENST00000476955		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5UTR-5UTR	ENST00000315473	ENST00000412331		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5UTR-5UTR	ENST00000315473	ENST00000381683		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5UTR-intron	ENST00000315473	ENST00000406934		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5UTR-3UTR	ENST00000315473	ENST00000476955		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
intron-5UTR	ENST00000447721	ENST00000412331		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
intron-5UTR	ENST00000447721	ENST00000381683		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
intron-intron	ENST00000447721	ENST00000406934		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
intron-3UTR	ENST00000447721	ENST00000476955		ChiTaRS3.1			BC001814	MARS	chr12	57883303	-	EIF3L	chr22	38245441	+
5CDS-intron	ENST00000335221	ENST00000528282		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000530481		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000445890		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000337057		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000530757		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000392427		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000368128		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000527411		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000524581		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000525271		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000525193		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000527659		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000529208		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000531410		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000335221	ENST00000530148		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000528282		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000530481		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000445890		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000337057		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000530757		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000392427		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000368128		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000527411		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000524581		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000525271		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000525193		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000527659		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000529208		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000531410		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000321892	ENST00000530148		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000528282		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000530481		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000445890		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000337057		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000530757		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000392427		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000368128		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000527411		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000524581		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000525271		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000525193		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000527659		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000529208		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000531410		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000306378	ENST00000530148		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000528282		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000530481		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000445890		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000337057		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000530757		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000392427		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000368128		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000527411		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000524581		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000525271		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000525193		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000527659		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000529208		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000531410		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
5CDS-intron	ENST00000424123	ENST00000530148		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000528282		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000530481		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000445890		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000337057		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000530757		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000392427		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000368128		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000527411		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000524581		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000525271		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000525193		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000527659		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000529208		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000531410		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000577770	ENST00000530148		ChiTaRS3.1			BX956924	BPTF	chr17	65871021	+	EPB41L2	chr6	131242123	-
intron-intron	ENST00000519937	ENST00000394054		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000519937	ENST00000326151		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000519937	ENST00000326172		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000342375	ENST00000394054		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000342375	ENST00000326151		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000342375	ENST00000326172		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000393822	ENST00000394054		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000393822	ENST00000326151		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000393822	ENST00000326172		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000409383	ENST00000394054		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000409383	ENST00000326151		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-intron	ENST00000409383	ENST00000326172		ChiTaRS3.1			BF358274	SFTPB	chr2	85887873	-	NFKBIZ	chr3	101575178	+
intron-3UTR	ENST00000393562	ENST00000393562		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393562	ENST00000369620		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393562	ENST00000393564		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393562	ENST00000497281		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-3UTR	ENST00000369620	ENST00000393562		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000369620	ENST00000369620		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000369620	ENST00000393564		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000369620	ENST00000497281		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-3UTR	ENST00000393564	ENST00000393562		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393564	ENST00000369620		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393564	ENST00000393564		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000393564	ENST00000497281		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-3UTR	ENST00000497281	ENST00000393562		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000497281	ENST00000369620		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000497281	ENST00000393564		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000497281	ENST00000497281		ChiTaRS3.1			BM688674	G6PD	chrX	153759659	+	G6PD	chrX	153760127	-
intron-intron	ENST00000264552	ENST00000536039		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000264552	ENST00000437374		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000264552	ENST00000420381		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000264552	ENST00000428780		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000264552	ENST00000434470		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000589978	ENST00000536039		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000589978	ENST00000437374		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000589978	ENST00000420381		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000589978	ENST00000428780		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000589978	ENST00000434470		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000592570	ENST00000536039		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000592570	ENST00000437374		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000592570	ENST00000420381		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000592570	ENST00000428780		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000592570	ENST00000434470		ChiTaRS3.1			CX762634	UBE2S	chr19	55918988	-	IDI2-AS1	chr10	1088639	-
intron-intron	ENST00000297313	ENST00000297313		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000344277		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000522225		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000276500		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000297313	ENST00000517405		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000297313		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000344277		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000522225		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000276500		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000344277	ENST00000517405		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000297313		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000344277		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000522225		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000276500		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000522225	ENST00000517405		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000297313		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000344277		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000522225		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000276500		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000276500	ENST00000517405		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000297313		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000344277		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000522225		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000276500		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
intron-intron	ENST00000517405	ENST00000517405		ChiTaRS3.1			CA313764	RGS20	chr8	54859340	+	RGS20	chr8	54859421	-
5CDS-5UTR	ENST00000311275	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000311275	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000311275	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000311275	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000360911	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000360911	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000360911	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000360911	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000458360	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000458360	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000458360	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000458360	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000262975	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000262975	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000262975	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000262975	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000471951	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000471951	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000471951	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000471951	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000352431	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000352431	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000352431	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000352431	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000396281	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000396281	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000396281	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000396281	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000446994	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000446994	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000446994	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000446994	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000536340	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000536340	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000536340	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000536340	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000355972	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000355972	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000355972	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000355972	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000540497	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000540497	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000540497	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000540497	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000461685	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000461685	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000461685	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000461685	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000372023	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000372023	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000372023	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
5CDS-5UTR	ENST00000372023	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
intron-5UTR	ENST00000468376	ENST00000240095		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
intron-5UTR	ENST00000468376	ENST00000359741		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
intron-5UTR	ENST00000468376	ENST00000381237		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
intron-5UTR	ENST00000468376	ENST00000289952		ChiTaRS3.1			DA093734	ZMYND8	chr20	45976598	-	SLC39A14	chr8	22262207	+
3UTR-3CDS	ENST00000397066	ENST00000397066		ChiTaRS3.1			CF137274	CCNF	chr16	2507069	-	CCNF	chr16	2506824	+
intron-intron	ENST00000409261	ENST00000519560		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409261	ENST00000332966		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409261	ENST00000404867		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409261	ENST00000521130		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409213	ENST00000519560		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409213	ENST00000332966		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409213	ENST00000404867		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000409213	ENST00000521130		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000405974	ENST00000519560		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000405974	ENST00000332966		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000405974	ENST00000404867		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000405974	ENST00000521130		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000317721	ENST00000519560		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000317721	ENST00000332966		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000317721	ENST00000404867		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000317721	ENST00000521130		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000473859	ENST00000519560		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000473859	ENST00000332966		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000473859	ENST00000404867		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
intron-intron	ENST00000473859	ENST00000521130		ChiTaRS3.1			CV413004	NCKAP5	chr2	134193555	+	SLIT3	chr5	168577147	-
3UTR-3CDS	ENST00000254976	ENST00000254976		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3CDS	ENST00000254976	ENST00000304886		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3UTR	ENST00000254976	ENST00000495883		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3CDS	ENST00000304886	ENST00000254976		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3CDS	ENST00000304886	ENST00000304886		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3UTR	ENST00000304886	ENST00000495883		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3CDS	ENST00000495883	ENST00000254976		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3CDS	ENST00000495883	ENST00000304886		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
3UTR-3UTR	ENST00000495883	ENST00000495883		ChiTaRS3.1			CD250904	SNAP25	chr20	10287786	+	SNAP25	chr20	10279945	+
intron-3CDS	ENST00000381638	ENST00000381638		ChiTaRS3.1			BF734724	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000381638	ENST00000574474		ChiTaRS3.1			BF734724	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-3CDS	ENST00000574474	ENST00000381638		ChiTaRS3.1			BF734724	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
intron-intron	ENST00000574474	ENST00000574474		ChiTaRS3.1			BF734724	ZZEF1	chr17	3959516	-	ZZEF1	chr17	3961406	+
Frame-shit	ENST00000254301	ENST00000254301		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000254301	ENST00000553755		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000254301	ENST00000554715		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-3CDS	ENST00000553755	ENST00000254301		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-intron	ENST00000553755	ENST00000553755		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
3UTR-intron	ENST00000553755	ENST00000554715		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
Frame-shit	ENST00000554715	ENST00000254301		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000554715	ENST00000553755		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
5CDS-intron	ENST00000554715	ENST00000554715		ChiTaRS3.1			CN479124	LGALS3	chr14	55607057	-	LGALS3	chr14	55611961	+
intron-3UTR	ENST00000355619	ENST00000217195		ChiTaRS3.1			BF591154	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000355619	ENST00000379772		ChiTaRS3.1			BF591154	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000477982	ENST00000217195		ChiTaRS3.1			BF591154	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-3UTR	ENST00000477982	ENST00000379772		ChiTaRS3.1			BF591154	FBXL3	chr13	77600494	-	C20orf27	chr20	3734379	-
intron-intron	ENST00000357674	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000357674	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000357674	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000357674	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000314062	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000314062	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000314062	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000314062	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000346964	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000346964	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000346964	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000346964	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000419354	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000419354	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000419354	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000419354	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000452595	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000452595	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000452595	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000452595	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000422288	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000422288	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000422288	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000422288	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000448528	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000448528	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000448528	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000448528	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000443183	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000443183	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000443183	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000443183	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000450955	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000450955	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000450955	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000450955	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000392382	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000392382	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000392382	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000392382	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000485409	ENST00000448637		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000485409	ENST00000312675		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000485409	ENST00000543006		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000485409	ENST00000471917		ChiTaRS3.1			BF155584	DLG1	chr3	196846404	+	LPP	chr3	188327632	-
intron-intron	ENST00000540628	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000540628	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000360429	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000568954	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000393524	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000356272	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000540628		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000360429		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000568954		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000393524		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000356272		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-intron	ENST00000567016	ENST00000567016		ChiTaRS3.1			AW885594	PHLPP2	chr16	71718965	+	PHLPP2	chr16	71717160	+
intron-3UTR	ENST00000362507	ENST00000278379		ChiTaRS3.1			AW902064	RNU5F-1	chr1	220253908	+	SLC1A2	chr11	35273404	-
intron-3UTR	ENST00000362507	ENST00000395750		ChiTaRS3.1			AW902064	RNU5F-1	chr1	220253908	+	SLC1A2	chr11	35273404	-
intron-3UTR	ENST00000362507	ENST00000395753		ChiTaRS3.1			AW902064	RNU5F-1	chr1	220253908	+	SLC1A2	chr11	35273404	-
intron-intron	ENST00000362507	ENST00000606205		ChiTaRS3.1			AW902064	RNU5F-1	chr1	220253908	+	SLC1A2	chr11	35273404	-
intron-intron	ENST00000362507	ENST00000479543		ChiTaRS3.1			AW902064	RNU5F-1	chr1	220253908	+	SLC1A2	chr11	35273404	-
intron-intron	ENST00000513661	ENST00000513661		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-3UTR	ENST00000513661	ENST00000329271		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-intron	ENST00000513661	ENST00000416916		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-3UTR	ENST00000513661	ENST00000507562		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-intron	ENST00000329271	ENST00000513661		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-3UTR	ENST00000329271	ENST00000329271		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-intron	ENST00000329271	ENST00000416916		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-3UTR	ENST00000329271	ENST00000507562		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-intron	ENST00000416916	ENST00000513661		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-3UTR	ENST00000416916	ENST00000329271		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-intron	ENST00000416916	ENST00000416916		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
intron-3UTR	ENST00000416916	ENST00000507562		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-intron	ENST00000507562	ENST00000513661		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-3UTR	ENST00000507562	ENST00000329271		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-intron	ENST00000507562	ENST00000416916		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-3UTR	ENST00000507562	ENST00000507562		ChiTaRS3.1			N40724	GRPEL2	chr5	148733379	-	GRPEL2	chr5	148733855	+
3UTR-intron	ENST00000233809	ENST00000270172		ChiTaRS3.1			BF222724	IGFBP2	chr2	217529068	-	DNMT3L	chr21	45671006	+
3UTR-intron	ENST00000233809	ENST00000418993		ChiTaRS3.1			BF222724	IGFBP2	chr2	217529068	-	DNMT3L	chr21	45671006	+
intron-intron	ENST00000456764	ENST00000270172		ChiTaRS3.1			BF222724	IGFBP2	chr2	217529068	-	DNMT3L	chr21	45671006	+
intron-intron	ENST00000456764	ENST00000418993		ChiTaRS3.1			BF222724	IGFBP2	chr2	217529068	-	DNMT3L	chr21	45671006	+
5CDS-3UTR	ENST00000355078	ENST00000355078		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000355078	ENST00000302763		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000355078	ENST00000518825		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-intron	ENST00000355078	ENST00000520400		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000355078	ENST00000540387		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000302763	ENST00000355078		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000302763	ENST00000302763		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000302763	ENST00000518825		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-intron	ENST00000302763	ENST00000520400		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000302763	ENST00000540387		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000518825	ENST00000355078		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000518825	ENST00000302763		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000518825	ENST00000518825		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-intron	ENST00000518825	ENST00000520400		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000518825	ENST00000540387		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-3UTR	ENST00000520400	ENST00000355078		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-3UTR	ENST00000520400	ENST00000302763		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-3UTR	ENST00000520400	ENST00000518825		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-intron	ENST00000520400	ENST00000520400		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-3UTR	ENST00000520400	ENST00000540387		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000540387	ENST00000355078		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000540387	ENST00000302763		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000540387	ENST00000518825		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-intron	ENST00000540387	ENST00000520400		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
5CDS-3UTR	ENST00000540387	ENST00000540387		ChiTaRS3.1			BF760314	CTNNA1	chr5	138266604	-	CTNNA1	chr5	138269797	-
intron-intron	ENST00000358377	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000358377	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000353777	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000394234	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000509153	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000555042	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000510612	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000358377		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000353777		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000394234		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000509153		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000555042		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000510612		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
intron-intron	ENST00000553457	ENST00000553457		ChiTaRS3.1			BE502134	DCAF4	chr14	73405958	-	DCAF4	chr14	73412224	-
Frame-shit	ENST00000294304	ENST00000294304		ChiTaRS3.1			R06144	LRP5	chr11	68216364	-	LRP5	chr11	68213918	+
5CDS-intron	ENST00000294304	ENST00000529481		ChiTaRS3.1			R06144	LRP5	chr11	68216364	-	LRP5	chr11	68213918	+
3UTR-3CDS	ENST00000529481	ENST00000294304		ChiTaRS3.1			R06144	LRP5	chr11	68216364	-	LRP5	chr11	68213918	+
3UTR-intron	ENST00000529481	ENST00000529481		ChiTaRS3.1			R06144	LRP5	chr11	68216364	-	LRP5	chr11	68213918	+
intron-3UTR	ENST00000338316	ENST00000371627		ChiTaRS3.1			DB313344	ADCY2	chr1	152005124	+	TNKS2	chr10	93623530	-
intron-3UTR	ENST00000537121	ENST00000371627		ChiTaRS3.1			DB313344	ADCY2	chr1	152005124	+	TNKS2	chr10	93623530	-
intron-3UTR	ENST00000513693	ENST00000371627		ChiTaRS3.1			DB313344	ADCY2	chr1	152005124	+	TNKS2	chr10	93623530	-
intron-3CDS	ENST00000235090	ENST00000439977		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000235090	ENST00000300302		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000235090	ENST00000344114		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000235090	ENST00000570273		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000235090	ENST00000379792		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000411751	ENST00000439977		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000411751	ENST00000300302		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000411751	ENST00000344114		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000411751	ENST00000570273		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000411751	ENST00000379792		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000497278	ENST00000439977		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000497278	ENST00000300302		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3CDS	ENST00000497278	ENST00000344114		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000497278	ENST00000570273		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000497278	ENST00000379792		ChiTaRS3.1			BE312794	WDR77	chr1	111990072	+	HERPUD1	chr16	56976109	+
intron-3UTR	ENST00000292330	ENST00000473204		ChiTaRS3.1			DA292134	PPP1R35	chr7	100036127	+	ANKRD19P	chr9	95600011	-
intron-3UTR	ENST00000476185	ENST00000473204		ChiTaRS3.1			DA292134	PPP1R35	chr7	100036127	+	ANKRD19P	chr9	95600011	-
intron-3CDS	ENST00000374561	ENST00000374561		ChiTaRS3.1			T78784	ID3	chr1	23885988	+	ID3	chr1	23885683	-
intron-5UTR	ENST00000374561	ENST00000486541		ChiTaRS3.1			T78784	ID3	chr1	23885988	+	ID3	chr1	23885683	-
intron-3CDS	ENST00000486541	ENST00000374561		ChiTaRS3.1			T78784	ID3	chr1	23885988	+	ID3	chr1	23885683	-
intron-5UTR	ENST00000486541	ENST00000486541		ChiTaRS3.1			T78784	ID3	chr1	23885988	+	ID3	chr1	23885683	-
3UTR-intron	ENST00000246533	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000246533	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000589146	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000587718	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000590874	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588815	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000377387		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000377390		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000377394		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000227503		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000334944		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000422298		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000433274		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
3UTR-intron	ENST00000588780	ENST00000489544		ChiTaRS3.1			BI857044	CAPNS1	chr19	36640766	+	SF1	chr11	64533416	-
5CDS-intron	ENST00000535016	ENST00000535016		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000535016	ENST00000265872		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000535016	ENST00000543719		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000535016	ENST00000483264		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000265872	ENST00000535016		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000265872	ENST00000265872		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000265872	ENST00000543719		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000265872	ENST00000483264		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000543719	ENST00000535016		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000543719	ENST00000265872		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000543719	ENST00000543719		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
5CDS-intron	ENST00000543719	ENST00000483264		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
intron-intron	ENST00000483264	ENST00000535016		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
intron-intron	ENST00000483264	ENST00000265872		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
intron-intron	ENST00000483264	ENST00000543719		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
intron-intron	ENST00000483264	ENST00000483264		ChiTaRS3.1			BF216494	CCAR1	chr10	70532797	+	CCAR1	chr10	70525633	+
intron-intron	ENST00000319715	ENST00000266517		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000319715	ENST00000335148		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000452655	ENST00000266517		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000452655	ENST00000335148		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000381039	ENST00000266517		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000381039	ENST00000335148		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000348022	ENST00000266517		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000348022	ENST00000335148		ChiTaRS3.1			CV420024	RBBP6	chr16	24555953	-	ETNK1	chr12	22784348	+
intron-intron	ENST00000328252	ENST00000368594		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000328252	ENST00000368593		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000328252	ENST00000487614		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000534838	ENST00000368594		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000534838	ENST00000368593		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000534838	ENST00000487614		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000483254	ENST00000368594		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000483254	ENST00000368593		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
intron-intron	ENST00000483254	ENST00000487614		ChiTaRS3.1			BF368694	PAPPA	chr9	119126716	-	INPP5A	chr10	134410696	+
Frame-shit	ENST00000392951	ENST00000392951		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000392951	ENST00000530649		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000392951	ENST00000532870		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000530649	ENST00000392951		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000530649	ENST00000530649		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000530649	ENST00000532870		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000532870	ENST00000392951		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000532870	ENST00000530649		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
Frame-shit	ENST00000532870	ENST00000532870		ChiTaRS3.1			BF733934	TAGLN	chr11	117074547	-	TAGLN	chr11	117074569	+
intron-intron	ENST00000452722	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000452722	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000452722	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000452722	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000452722	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000452722	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537140	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000542447	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000537058	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000536727	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000395159		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000216463		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000555593		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000556007		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000555061		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-intron	ENST00000331581	ENST00000555404		ChiTaRS3.1			BM722144	CADM1	chr11	115302959	-	TIMM9	chr14	58889991	-
intron-3UTR	ENST00000339775	ENST00000394155		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000370690		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000535737		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000543669		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000394153		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000345434		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000539015		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000339775	ENST00000370683		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000339775	ENST00000370676		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000339775	ENST00000477080		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000394155		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000370690		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000535737		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000543669		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000394153		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000345434		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000539015		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000348354	ENST00000370683		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000348354	ENST00000370676		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000348354	ENST00000477080		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000394155		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000370690		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000535737		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000543669		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000394153		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000345434		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000539015		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3UTR	ENST00000464058	ENST00000370683		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000464058	ENST00000370676		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-intron	ENST00000464058	ENST00000477080		ChiTaRS3.1			BF092514	BTG3	chr21	18966569	+	FHL1	chrX	135292681	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766274	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766274	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3UTR	ENST00000002165	ENST00000295702		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000002165	ENST00000529008		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000002165	ENST00000496742		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000002165	ENST00000480567		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000438118	ENST00000295702		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000438118	ENST00000529008		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000438118	ENST00000496742		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000438118	ENST00000480567		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000367585	ENST00000295702		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000367585	ENST00000529008		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000367585	ENST00000496742		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-3UTR	ENST00000367585	ENST00000480567		ChiTaRS3.1			BE837584	FUCA2	chr6	143816937	-	SSR2	chr1	155979271	+
intron-intron	ENST00000437508	ENST00000334062		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000437508	ENST00000389544		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000437508	ENST00000542651		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000334062		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000389544		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000494872	ENST00000542651		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000334062		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000389544		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000338700	ENST00000542651		ChiTaRS3.1			BF510774	TRIM2	chr4	154191489	-	RASA3	chr13	114874409	-
intron-intron	ENST00000475548	ENST00000475548		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000475548	ENST00000358743		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000475548	ENST00000347557		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000475548	ENST00000333137		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000475548	ENST00000404574		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000358743	ENST00000475548		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000358743	ENST00000358743		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000358743	ENST00000347557		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000358743	ENST00000333137		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000358743	ENST00000404574		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000347557	ENST00000475548		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000347557	ENST00000358743		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000347557	ENST00000347557		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000347557	ENST00000333137		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000347557	ENST00000404574		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000333137	ENST00000475548		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000333137	ENST00000358743		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000333137	ENST00000347557		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000333137	ENST00000333137		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000333137	ENST00000404574		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000404574	ENST00000475548		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000404574	ENST00000358743		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000404574	ENST00000347557		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000404574	ENST00000333137		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000404574	ENST00000404574		ChiTaRS3.1			W22074	SMTN	chr22	31488437	-	SMTN	chr22	31491419	+
intron-intron	ENST00000377669	ENST00000377669		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377669	ENST00000377666		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377669	ENST00000472022		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000377669		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000377666		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000377666	ENST00000472022		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000377669		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000377666		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000472022	ENST00000472022		ChiTaRS3.1			BE073834	KLF12	chr13	74615582	+	KLF12	chr13	74615471	-
intron-intron	ENST00000339788	ENST00000339788		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000339788	ENST00000320816		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000339788	ENST00000545653		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000339788	ENST00000509337		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000339788	ENST00000512525		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000320816	ENST00000339788		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000320816	ENST00000320816		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000320816	ENST00000545653		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000320816	ENST00000509337		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000320816	ENST00000512525		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000545653	ENST00000339788		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000545653	ENST00000320816		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000545653	ENST00000545653		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000545653	ENST00000509337		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000545653	ENST00000512525		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000509337	ENST00000339788		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000509337	ENST00000320816		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000509337	ENST00000545653		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000509337	ENST00000509337		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000509337	ENST00000512525		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000512525	ENST00000339788		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000512525	ENST00000320816		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000512525	ENST00000545653		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000512525	ENST00000509337		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
intron-intron	ENST00000512525	ENST00000512525		ChiTaRS3.1			DA569334	DAB2	chr5	39414168	-	DAB2	chr5	39418157	-
Frame-shit	ENST00000321556	ENST00000321556		ChiTaRS3.1			T08564	PINK1	chr1	20966460	-	PINK1	chr1	20964579	+
5CDS-intron	ENST00000321556	ENST00000492302		ChiTaRS3.1			T08564	PINK1	chr1	20966460	-	PINK1	chr1	20964579	+
3UTR-3CDS	ENST00000492302	ENST00000321556		ChiTaRS3.1			T08564	PINK1	chr1	20966460	-	PINK1	chr1	20964579	+
3UTR-intron	ENST00000492302	ENST00000492302		ChiTaRS3.1			T08564	PINK1	chr1	20966460	-	PINK1	chr1	20964579	+
5CDS-3UTR	ENST00000344063	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000344063	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000344063	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000431533	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000431533	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-intron	ENST00000431533	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000428193	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000428193	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-intron	ENST00000428193	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000558815	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000558815	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000558815	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000560583	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000560583	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000560583	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000560055	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000560055	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000560055	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000559463	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000559463	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000559463	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
3UTR-3UTR	ENST00000558131	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
3UTR-3UTR	ENST00000558131	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
3UTR-intron	ENST00000558131	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000558752	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-3UTR	ENST00000558752	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-intron	ENST00000558752	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000458349	ENST00000403305		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-3UTR	ENST00000458349	ENST00000249079		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
5CDS-intron	ENST00000458349	ENST00000403026		ChiTaRS3.1			DB253394	RPL28	chr19	55899410	+	C22orf23	chr22	38340103	+
intron-intron	ENST00000336934	ENST00000336934		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000336934	ENST00000255486		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000336934	ENST00000399365		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000336934	ENST00000487412		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000336934	ENST00000439831		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000255486	ENST00000336934		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000255486	ENST00000255486		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000255486	ENST00000399365		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000255486	ENST00000487412		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000255486	ENST00000439831		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000399365	ENST00000336934		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000399365	ENST00000255486		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000399365	ENST00000399365		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000399365	ENST00000487412		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000399365	ENST00000439831		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000487412	ENST00000336934		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000487412	ENST00000255486		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000487412	ENST00000399365		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000487412	ENST00000487412		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000487412	ENST00000439831		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000439831	ENST00000336934		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000439831	ENST00000255486		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000439831	ENST00000399365		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000439831	ENST00000487412		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-intron	ENST00000439831	ENST00000439831		ChiTaRS3.1			BI042494	STARD13	chr13	33764231	+	STARD13	chr13	33764346	-
intron-3UTR	ENST00000287878	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-3UTR	ENST00000418337	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-3UTR	ENST00000433631	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-3UTR	ENST00000492843	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-3UTR	ENST00000392801	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-3UTR	ENST00000461529	ENST00000534336		ChiTaRS3.1			BE763984	PRKAG2	chr7	151257549	+	MALAT1	chr11	65266868	-
intron-5UTR	ENST00000349703	ENST00000519097		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000380036		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000349703	ENST00000406359		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000519097		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000380036		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000381897	ENST00000406359		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000519097		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000380036		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-5UTR	ENST00000418436	ENST00000406359		ChiTaRS3.1			BF594294	RFC1	chr4	39310592	+	TEK	chr9	27109556	-
intron-3UTR	ENST00000286190	ENST00000260665		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000286190	ENST00000409946		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000286190	ENST00000409659		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-3UTR	ENST00000405148	ENST00000260665		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000405148	ENST00000409946		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000405148	ENST00000409659		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-3UTR	ENST00000392257	ENST00000260665		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000392257	ENST00000409946		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000392257	ENST00000409659		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-3UTR	ENST00000439709	ENST00000260665		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000439709	ENST00000409946		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000439709	ENST00000409659		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-3UTR	ENST00000448967	ENST00000260665		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000448967	ENST00000409946		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
intron-intron	ENST00000448967	ENST00000409659		ChiTaRS3.1			BF735164	ALS2CR12	chr2	202156301	-	LRPPRC	chr2	44115457	-
5CDS-intron	ENST00000418917	ENST00000262839		ChiTaRS3.1			T05994	TFG	chr3	100467300	+	TRPC5	chrX	111289237	-
5CDS-intron	ENST00000490574	ENST00000262839		ChiTaRS3.1			T05994	TFG	chr3	100467300	+	TRPC5	chrX	111289237	-
5CDS-intron	ENST00000240851	ENST00000262839		ChiTaRS3.1			T05994	TFG	chr3	100467300	+	TRPC5	chrX	111289237	-
5CDS-intron	ENST00000476228	ENST00000262839		ChiTaRS3.1			T05994	TFG	chr3	100467300	+	TRPC5	chrX	111289237	-
3UTR-intron	ENST00000481203	ENST00000262839		ChiTaRS3.1			T05994	TFG	chr3	100467300	+	TRPC5	chrX	111289237	-
intron-intron	ENST00000530927	ENST00000376499		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000530927	ENST00000376472		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000530927	ENST00000376463		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000530927	ENST00000376484		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000530927	ENST00000464999		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000380815	ENST00000376499		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000380815	ENST00000376472		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000380815	ENST00000376463		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000380815	ENST00000376484		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000380815	ENST00000464999		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000467288	ENST00000376499		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000467288	ENST00000376472		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000467288	ENST00000376463		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000467288	ENST00000376484		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000467288	ENST00000464999		ChiTaRS3.1			BE002314	GMDS	chr6	1860850	-	TLE1	chr9	84253482	-
intron-intron	ENST00000458659	ENST00000583129		ChiTaRS3.1			BE176674	TSC22D1	chr13	45008137	+	MIR548O2	chr8	29923649	-
intron-intron	ENST00000501704	ENST00000583129		ChiTaRS3.1			BE176674	TSC22D1	chr13	45008137	+	MIR548O2	chr8	29923649	-
intron-intron	ENST00000261489	ENST00000583129		ChiTaRS3.1			BE176674	TSC22D1	chr13	45008137	+	MIR548O2	chr8	29923649	-
intron-intron	ENST00000460842	ENST00000583129		ChiTaRS3.1			BE176674	TSC22D1	chr13	45008137	+	MIR548O2	chr8	29923649	-
intron-intron	ENST00000383699	ENST00000383699		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000407528		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000405615		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000383699	ENST00000485126		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000383699		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000407528		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000405615		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000407528	ENST00000485126		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000383699		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000407528		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000405615		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000405615	ENST00000485126		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000383699		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000407528		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000405615		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000485126	ENST00000485126		ChiTaRS3.1			AW898054	CADM2	chr3	85065245	-	CADM2	chr3	85065219	+
intron-intron	ENST00000562955	ENST00000562955		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000562955	ENST00000372442		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000562955	ENST00000310739		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000562955	ENST00000372450		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000562955	ENST00000471177		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372442	ENST00000562955		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372442	ENST00000372442		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372442	ENST00000310739		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372442	ENST00000372450		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372442	ENST00000471177		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000310739	ENST00000562955		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000310739	ENST00000372442		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000310739	ENST00000310739		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000310739	ENST00000372450		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000310739	ENST00000471177		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372450	ENST00000562955		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372450	ENST00000372442		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372450	ENST00000310739		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372450	ENST00000372450		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000372450	ENST00000471177		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000471177	ENST00000562955		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000471177	ENST00000372442		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000471177	ENST00000310739		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000471177	ENST00000372450		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-intron	ENST00000471177	ENST00000471177		ChiTaRS3.1			BF377264	SZT2	chr1	43910064	-	SZT2	chr1	43909653	+
intron-3CDS	ENST00000234111	ENST00000234111		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-3CDS	ENST00000234111	ENST00000405333		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-intron	ENST00000234111	ENST00000446285		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-3CDS	ENST00000405333	ENST00000234111		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-3CDS	ENST00000405333	ENST00000405333		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-intron	ENST00000405333	ENST00000446285		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-3CDS	ENST00000446285	ENST00000234111		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-3CDS	ENST00000446285	ENST00000405333		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
intron-intron	ENST00000446285	ENST00000446285		ChiTaRS3.1			BM794694	ODC1	chr2	10582225	+	ODC1	chr2	10582178	-
5CDS-intron	ENST00000338252	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000338252	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000338252	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000338252	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000338252	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508830	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508830	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508830	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508830	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000359176	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000359176	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000359176	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000359176	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395812	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395812	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395812	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395812	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000325674	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000325674	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000325674	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000325674	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395813	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395813	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000395813	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000395813	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000510756	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000510756	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000510756	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000510756	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508608	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508608	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508608	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508608	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000341926	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000341926	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000341926	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000341926	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511049	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511049	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511049	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511049	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000309190	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000309190	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000309190	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000309190	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000509903	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000509903	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000509903	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000509903	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511782	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511782	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000511782	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000511782	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000504465	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000504465	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000504465	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000504465	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-3UTR	ENST00000348386	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-3UTR	ENST00000348386	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-3UTR	ENST00000348386	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
3UTR-intron	ENST00000348386	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508579	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508579	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000508579	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000508579	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000356918		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000510769		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000515663	ENST00000429253		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000515663	ENST00000510688		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000511262		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-3UTR	ENST00000515663	ENST00000383366		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000412440		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000507910		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000508196		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
5CDS-intron	ENST00000515663	ENST00000426022		ChiTaRS3.1			AW995804	CAST	chr5	96084253	-	NEK11	chr3	131069219	-
intron-3CDS	ENST00000367838	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000367838	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367838	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367838	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367838	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000271357	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000271357	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000271357	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000271357	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000271357	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000367836	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000367836	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367836	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367836	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367836	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000539777	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000539777	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000539777	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000539777	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000539777	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000537209	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000537209	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000537209	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000537209	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000537209	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000361697	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000361697	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000361697	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000361697	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000361697	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000546300	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000546300	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000546300	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000546300	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000546300	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000367835	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000367835	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367835	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367835	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000367835	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000485232	ENST00000457913		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-3CDS	ENST00000485232	ENST00000277225		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000485232	ENST00000441147		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000485232	ENST00000542028		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
intron-intron	ENST00000485232	ENST00000497489		ChiTaRS3.1			CB218114	GPR161	chr1	168054658	+	ZNF462	chr9	109688696	-
5CDS-intron	ENST00000340855	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000340855	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000340855	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000340855	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000340855	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000340855	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000537071	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000537071	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000537071	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000537071	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000537071	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000541269	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000541269	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000541269	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000541269	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000541269	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000422081	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000422081	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000422081	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000422081	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000422081	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000370441	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000370441	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000370441	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-5UTR	ENST00000370441	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5CDS-intron	ENST00000370441	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000490775	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000490775	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000490775	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-5UTR	ENST00000490775	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
5UTR-intron	ENST00000490775	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000370443	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000370443	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000370443	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000370443	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000370443	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000427113	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000427113	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000427113	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000427113	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000427113	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000412882		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000428056	ENST00000609369		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000437981		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000596412		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000431025		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000430173		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000451969		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000428056	ENST00000541582		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000608616		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000447209		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000609161		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000428056	ENST00000436708		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-5UTR	ENST00000428056	ENST00000431214		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000608342		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000609314		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000609651		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-intron	ENST00000428056	ENST00000608355		ChiTaRS3.1			U66054	IDS	chrX	148571843	-	LINC00893	chrX	148615706	+
intron-3CDS	ENST00000398958	ENST00000398958		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000398958	ENST00000373833		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000398958	ENST00000373832		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000398958	ENST00000373831		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-intron	ENST00000398958	ENST00000429051		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373833	ENST00000398958		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373833	ENST00000373833		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373833	ENST00000373832		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373833	ENST00000373831		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-intron	ENST00000373833	ENST00000429051		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373832	ENST00000398958		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373832	ENST00000373833		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373832	ENST00000373832		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373832	ENST00000373831		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-intron	ENST00000373832	ENST00000429051		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373831	ENST00000398958		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373831	ENST00000373833		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373831	ENST00000373832		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000373831	ENST00000373831		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-intron	ENST00000373831	ENST00000429051		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000429051	ENST00000398958		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000429051	ENST00000373833		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000429051	ENST00000373832		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-3CDS	ENST00000429051	ENST00000373831		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
intron-intron	ENST00000429051	ENST00000429051		ChiTaRS3.1			BF094114	RCC1	chr1	28848821	-	RCC1	chr1	28858352	-
5CDS-intron	ENST00000327155	ENST00000397517		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000327155	ENST00000539966		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000327155	ENST00000481288		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000327155	ENST00000376547		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399722	ENST00000397517		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399722	ENST00000539966		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399722	ENST00000481288		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399722	ENST00000376547		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399725	ENST00000397517		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399725	ENST00000539966		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399725	ENST00000481288		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000399725	ENST00000376547		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000360790	ENST00000397517		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000360790	ENST00000539966		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000360790	ENST00000481288		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
5CDS-intron	ENST00000360790	ENST00000376547		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
intron-intron	ENST00000581687	ENST00000397517		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
intron-intron	ENST00000581687	ENST00000539966		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
intron-intron	ENST00000581687	ENST00000481288		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
intron-intron	ENST00000581687	ENST00000376547		ChiTaRS3.1			BF327624	RBBP8	chr18	20572940	+	STK24	chr13	99210430	+
intron-intron	ENST00000393500	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393500		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393494		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000403559		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000408937		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000350908		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393498		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393489		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393491		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000459666		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000378237		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000360232		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000390668		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000462331		ChiTaRS3.1			CV410554	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-3UTR	ENST00000410534	ENST00000296529		ChiTaRS3.1			CN414214	SOX2-OT	chr3	181431290	+	TMEM144	chr4	159176248	+
intron-intron	ENST00000410534	ENST00000509278		ChiTaRS3.1			CN414214	SOX2-OT	chr3	181431290	+	TMEM144	chr4	159176248	+
intron-intron	ENST00000410534	ENST00000514558		ChiTaRS3.1			CN414214	SOX2-OT	chr3	181431290	+	TMEM144	chr4	159176248	+
intron-3UTR	ENST00000410534	ENST00000503404		ChiTaRS3.1			CN414214	SOX2-OT	chr3	181431290	+	TMEM144	chr4	159176248	+
3UTR-3UTR	ENST00000482108	ENST00000482108		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
3UTR-intron	ENST00000482108	ENST00000488574		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
3UTR-intron	ENST00000482108	ENST00000465184		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-3UTR	ENST00000488574	ENST00000482108		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000488574	ENST00000488574		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000488574	ENST00000465184		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-3UTR	ENST00000465184	ENST00000482108		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000465184	ENST00000488574		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
intron-intron	ENST00000465184	ENST00000465184		ChiTaRS3.1			BE178954	PEG10	chr7	94296714	+	PEG10	chr7	94296599	-
3UTR-3UTR	ENST00000274787	ENST00000288699		ChiTaRS3.1			H72334	HIGD2A	chr5	175816709	-	DPYSL5	chr2	27170905	-
3UTR-intron	ENST00000274787	ENST00000401478		ChiTaRS3.1			H72334	HIGD2A	chr5	175816709	-	DPYSL5	chr2	27170905	-
3UTR-3UTR	ENST00000558401	ENST00000237536		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000558401	ENST00000279034		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000558401	ENST00000456801		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000558401	ENST00000357779		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-3UTR	ENST00000559916	ENST00000237536		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000559916	ENST00000279034		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000559916	ENST00000456801		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000559916	ENST00000357779		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-3UTR	ENST00000544417	ENST00000237536		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000544417	ENST00000279034		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000544417	ENST00000456801		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
intron-intron	ENST00000544417	ENST00000357779		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-3UTR	ENST00000559220	ENST00000237536		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000559220	ENST00000279034		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000559220	ENST00000456801		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
3UTR-intron	ENST00000559220	ENST00000357779		ChiTaRS3.1			BP235524	B2M	chr15	45010224	+	SOGA1	chr20	35406473	-
5CDS-intron	ENST00000358077	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000358077	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000472284	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000472284	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000469640	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000469640	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000408954	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000408954	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000491893	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
5CDS-intron	ENST00000491893	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
intron-intron	ENST00000466188	ENST00000377182		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
intron-intron	ENST00000466188	ENST00000460688		ChiTaRS3.1			BC003614	DAPK1	chr9	90260886	+	MAMDC2	chr9	72832516	+
intron-intron	ENST00000330430	ENST00000396153		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000371778		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000545823		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000330430	ENST00000472808		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000396153		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000371778		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000545823		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000371374	ENST00000472808		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000396153		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000371778		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000545823		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000306764	ENST00000472808		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000396153		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000371778		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000545823		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000405162	ENST00000472808		ChiTaRS3.1			BI035294	RCAN2	chr6	46314918	-	FAF1	chr1	50923312	-
intron-intron	ENST00000304698	ENST00000304698		ChiTaRS3.1			CD237934	FAM171B	chr2	187589798	+	FAM171B	chr2	187585044	+
intron-3UTR	ENST00000229854	ENST00000373060		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000229854	ENST00000373063		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000229854	ENST00000409208		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000229854	ENST00000373057		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000229854	ENST00000307972		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000596288	ENST00000373060		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000596288	ENST00000373063		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000596288	ENST00000409208		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000596288	ENST00000373057		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000596288	ENST00000307972		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000419835	ENST00000373060		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000419835	ENST00000373063		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000419835	ENST00000409208		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000419835	ENST00000373057		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000419835	ENST00000307972		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000476448	ENST00000373060		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000476448	ENST00000373063		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000476448	ENST00000409208		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000476448	ENST00000373057		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3UTR	ENST00000476448	ENST00000307972		ChiTaRS3.1			BP227044	MCM3	chr6	52148128	-	FOXP4	chr6	41567150	+
intron-3CDS	ENST00000328252	ENST00000328252		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-3CDS	ENST00000534838	ENST00000328252		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-3CDS	ENST00000483254	ENST00000328252		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			BP320564	PAPPA	chr9	119099490	+	PAPPA	chr9	118989791	+
intron-intron	ENST00000395487	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000395487	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000429094	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000429094	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000551601	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000551601	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000452445	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000452445	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000549027	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000549027	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000333837	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000333837	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000437801	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000437801	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000547172	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000547172	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000548826	ENST00000416753		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000548826	ENST00000013070		ChiTaRS3.1			BE696424	NELL2	chr12	44917815	-	UBR7	chr14	93685081	-
intron-intron	ENST00000397827	ENST00000381567		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000397827	ENST00000467626		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000397827	ENST00000381566		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000299847	ENST00000381567		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000299847	ENST00000467626		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000299847	ENST00000381566		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000401522	ENST00000381567		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000401522	ENST00000467626		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000401522	ENST00000381566		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000567722	ENST00000381567		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000567722	ENST00000467626		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-intron	ENST00000567722	ENST00000381566		ChiTaRS3.1			BC062414	CHRFAM7A	chr15	30685017	-	CRLF2	chrY	1332347	+
intron-3CDS	ENST00000316084	ENST00000261332		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
intron-3CDS	ENST00000316084	ENST00000589881		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
intron-3CDS	ENST00000316084	ENST00000399061		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
Frame-shit	ENST00000486733	ENST00000261332		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
In-frame	ENST00000486733	ENST00000589881		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
Frame-shit	ENST00000486733	ENST00000399061		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
intron-3CDS	ENST00000373626	ENST00000261332		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
intron-3CDS	ENST00000373626	ENST00000589881		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
intron-3CDS	ENST00000373626	ENST00000399061		ChiTaRS3.1			H21354	RPS4X	chrX	71492563	+	ZNF24	chr18	32920252	+
3UTR-3UTR	ENST00000271332	ENST00000391918		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000271332	ENST00000291295		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000271332	ENST00000597743		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000271332	ENST00000477244		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-intron	ENST00000271332	ENST00000598871		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-intron	ENST00000271332	ENST00000594523		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000271332	ENST00000599839		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000271332	ENST00000596362		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000391918		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000291295		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000597743		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000477244		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-intron	ENST00000498157	ENST00000598871		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-intron	ENST00000498157	ENST00000594523		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000599839		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
3UTR-3UTR	ENST00000498157	ENST00000596362		ChiTaRS3.1			AW895034	CELSR2	chr1	109818153	+	CALM3	chr19	47112477	-
intron-3UTR	ENST00000231512	ENST00000397128		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-intron	ENST00000231512	ENST00000354209		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-intron	ENST00000231512	ENST00000296800		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-3UTR	ENST00000507191	ENST00000397128		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-intron	ENST00000507191	ENST00000354209		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-intron	ENST00000507191	ENST00000296800		ChiTaRS3.1			BE002414	C5orf15	chr5	133292101	+	PRKAA1	chr5	40760954	+
intron-3CDS	ENST00000255557	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000577615	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000268942	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000359042	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
intron-3CDS	ENST00000426147	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000535032	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
Frame-shit	ENST00000582793	ENST00000281043		ChiTaRS3.1			CX752004	C17orf80	chr17	71243455	-	MYCN	chr2	16085675	+
intron-5UTR	ENST00000323345	ENST00000528498		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000323345	ENST00000528900		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000323345	ENST00000405097		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000323345	ENST00000530301		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000323345	ENST00000343115		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-intron	ENST00000323345	ENST00000544551		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000463740	ENST00000528498		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000463740	ENST00000528900		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000463740	ENST00000405097		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000463740	ENST00000530301		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000463740	ENST00000343115		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-intron	ENST00000463740	ENST00000544551		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000315731	ENST00000528498		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000315731	ENST00000528900		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000315731	ENST00000405097		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000315731	ENST00000530301		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-5UTR	ENST00000315731	ENST00000343115		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-intron	ENST00000315731	ENST00000544551		ChiTaRS3.1			BC012174	RPL7A	chr9	136215776	-	RDX	chr11	110167324	-
intron-3CDS	ENST00000556539	ENST00000324460		ChiTaRS3.1			CV335734	STAT2	chr12	56737814	-	HSPA5	chr9	128000896	+
intron-3CDS	ENST00000314128	ENST00000324460		ChiTaRS3.1			CV335734	STAT2	chr12	56737814	-	HSPA5	chr9	128000896	+
intron-3CDS	ENST00000557235	ENST00000324460		ChiTaRS3.1			CV335734	STAT2	chr12	56737814	-	HSPA5	chr9	128000896	+
intron-3CDS	ENST00000418572	ENST00000324460		ChiTaRS3.1			CV335734	STAT2	chr12	56737814	-	HSPA5	chr9	128000896	+
intron-3CDS	ENST00000470610	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000470610	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000470610	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000470610	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000470610	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000470610	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000470610	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000389672	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000389672	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000542517	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000542517	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000514100	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000514100	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000502694	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000502694	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000394670		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000321233		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000394673		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000341711		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000342555		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-3CDS	ENST00000442602	ENST00000577908		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
intron-intron	ENST00000442602	ENST00000584416		ChiTaRS3.1			DA718594	EPHA6	chr3	97437933	-	ZNF207	chr17	30678873	+
5CDS-intron	ENST00000375759	ENST00000390168		ChiTaRS3.1			R83184	SPEN	chr1	16263946	+	H19	chr11	2016863	-
intron-intron	ENST00000471538	ENST00000390168		ChiTaRS3.1			R83184	SPEN	chr1	16263946	+	H19	chr11	2016863	-
intron-3CDS	ENST00000225964	ENST00000358595		ChiTaRS3.1			CA422154	COL1A1	chr17	48262840	+	ARNT	chr1	150789322	+
intron-3CDS	ENST00000225964	ENST00000354396		ChiTaRS3.1			CA422154	COL1A1	chr17	48262840	+	ARNT	chr1	150789322	+
intron-3CDS	ENST00000225964	ENST00000515192		ChiTaRS3.1			CA422154	COL1A1	chr17	48262840	+	ARNT	chr1	150789322	+
intron-3CDS	ENST00000225964	ENST00000505755		ChiTaRS3.1			CA422154	COL1A1	chr17	48262840	+	ARNT	chr1	150789322	+
intron-intron	ENST00000225964	ENST00000468970		ChiTaRS3.1			CA422154	COL1A1	chr17	48262840	+	ARNT	chr1	150789322	+
intron-intron	ENST00000254101	ENST00000398907		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000398905		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000288319		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000398897		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000398911		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000398910		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000417133		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000442448		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000453032		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000398919		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000429727		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000254101	ENST00000485493		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398907		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398905		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000288319		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398897		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398911		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398910		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000417133		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000442448		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000453032		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000398919		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000429727		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000496858	ENST00000485493		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398907		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398905		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000288319		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398897		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398911		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398910		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000417133		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000442448		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000453032		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000398919		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000429727		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000425272	ENST00000485493		ChiTaRS3.1			BX482434	PRKAB2	chr1	146636898	-	ERG	chr21	39769274	-
intron-intron	ENST00000288398	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000554144		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000420433		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000556376		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000381260		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000337881		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000605395		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000508121		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000503639		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000553379		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000381255		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000317745		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000555760		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000556614		ChiTaRS3.1			AW950454	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-5UTR	ENST00000399912	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-5UTR	ENST00000341339	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-5UTR	ENST00000329492	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-5UTR	ENST00000442429	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-5UTR	ENST00000008876	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-5UTR	ENST00000399908	ENST00000445551		ChiTaRS3.1			BI041514	MAPK8IP2	chr22	51040086	+	FOXD2-AS1	chr1	47897932	+
intron-3UTR	ENST00000498485	ENST00000597629		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-3UTR	ENST00000498485	ENST00000248673		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-intron	ENST00000498485	ENST00000594045		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-3UTR	ENST00000259457	ENST00000597629		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-3UTR	ENST00000259457	ENST00000248673		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-intron	ENST00000259457	ENST00000594045		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-3UTR	ENST00000536392	ENST00000597629		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-3UTR	ENST00000536392	ENST00000248673		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-intron	ENST00000536392	ENST00000594045		ChiTaRS3.1			BM990034	PSMB7	chr9	127115955	+	ZFP36	chr19	39899603	+
intron-5UTR	ENST00000368891	ENST00000566231		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000570195		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000486645		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000219400		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000564249		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000565914		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000565925		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000565108		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000564174		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000368891	ENST00000562713		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-5UTR	ENST00000481909	ENST00000566231		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000570195		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000486645		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000219400		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000564249		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000565914		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000565925		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000565108		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000564174		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-3UTR	ENST00000481909	ENST00000562713		ChiTaRS3.1			BE765374	C10orf88	chr10	124691240	-	CMC2	chr16	81010079	-
intron-intron	ENST00000338910	ENST00000331161		ChiTaRS3.1			BM722344	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000338910	ENST00000376363		ChiTaRS3.1			BM722344	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000497722	ENST00000331161		ChiTaRS3.1			BM722344	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000497722	ENST00000376363		ChiTaRS3.1			BM722344	PSPC1	chr13	20293716	-	ENKUR	chr10	25313385	+
intron-intron	ENST00000356462	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000356462	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000400345	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000589054	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256832	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000382850	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000256830	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000588516	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456986	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000435432	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000357895	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000586263	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000456173	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000356462		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000400345		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000589054		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000256832		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000382850		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000256830		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000588516		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000456986		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000435432		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000357895		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000586263		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000456173		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-intron	ENST00000431212	ENST00000431212		ChiTaRS3.1			BM976134	NEDD4L	chr18	55763938	-	NEDD4L	chr18	55765468	-
intron-3UTR	ENST00000296522	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296522	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000296521	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000296521	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000510901	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000510901	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000422112	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000422112	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000541923	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000541923	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000542498	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000542498	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-3UTR	ENST00000504433	ENST00000296522		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000296521		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000510901		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000422112		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000541923		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000542498		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000504433	ENST00000504433		ChiTaRS3.1			J05594	HPGD	chr4	175411612	-	HPGD	chr4	175411745	+
intron-intron	ENST00000294309	ENST00000402881		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000294309	ENST00000478342		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000294309	ENST00000325301		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000294309	ENST00000404569		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000542467	ENST00000402881		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000542467	ENST00000478342		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000542467	ENST00000325301		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000542467	ENST00000404569		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000442692	ENST00000402881		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000442692	ENST00000478342		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000442692	ENST00000325301		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
intron-intron	ENST00000442692	ENST00000404569		ChiTaRS3.1			DB522164	TPCN2	chr11	68823859	+	MIEF1	chr22	39896813	-
3UTR-3CDS	ENST00000335255	ENST00000264705		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-3CDS	ENST00000335255	ENST00000403525		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-intron	ENST00000335255	ENST00000464159		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-3CDS	ENST00000529652	ENST00000264705		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-3CDS	ENST00000529652	ENST00000403525		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-intron	ENST00000529652	ENST00000464159		ChiTaRS3.1			BF765434	FOXK2	chr17	80559507	-	CAD	chr2	27459622	+
3UTR-3UTR	ENST00000372891	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372891	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372891	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372891	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372891	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372891	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372891	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372891	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372891	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372894	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372894	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372894	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372894	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372892	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372892	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372892	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372892	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372889	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372889	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372889	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372889	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372887	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372887	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372887	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372887	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372882	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372882	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000372882	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000372882	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000477390	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000477390	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-intron	ENST00000477390	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3UTR	ENST00000477390	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372886	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372886	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000372886	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000372886	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000372891		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000372894		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000372892		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000372889		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000349959	ENST00000372887		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000349959	ENST00000372882		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-intron	ENST00000349959	ENST00000477390		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000372886		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
3UTR-3UTR	ENST00000349959	ENST00000349959		ChiTaRS3.1			AW974374	PKIG	chr20	43247669	+	PKIG	chr20	43247530	-
intron-3CDS	ENST00000306749	ENST00000393561		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000306749	ENST00000222399		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000306749	ENST00000393560		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-intron	ENST00000306749	ENST00000474380		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000393561		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000222399		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3CDS	ENST00000579758	ENST00000393560		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-intron	ENST00000579758	ENST00000474380		ChiTaRS3.1			BE818234	FASN	chr17	80051160	+	LAMB1	chr7	107601731	-
intron-3UTR	ENST00000600128	ENST00000600128		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000600128	ENST00000270509		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000600128	ENST00000601739		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000270509	ENST00000600128		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000270509	ENST00000270509		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000270509	ENST00000601739		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000601739	ENST00000600128		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000601739	ENST00000270509		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3UTR	ENST00000601739	ENST00000601739		ChiTaRS3.1			BX113164	FBN3	chr19	8130867	+	FBN3	chr19	8130646	-
intron-3CDS	ENST00000332050	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000332050	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000397938	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000406548	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-3CDS	ENST00000331029	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000414183	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000333395	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000371564		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000396009		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609943		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000610033		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000414705		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
In-frame	ENST00000332035	ENST00000609507		ChiTaRS3.1			FJ573259	EWSR1	chr22	29684775	+	NFATC2	chr20	50133495	-
intron-intron	ENST00000425019	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000425019	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000425019	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000425019	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000324219	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000324219	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000324219	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000324219	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350198	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350198	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000350198	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350198	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000302217	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000302217	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000302217	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000302217	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000413150	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000413150	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-3UTR	ENST00000413150	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000413150	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000347699	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000347699	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000347699	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000347699	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000456652	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000456652	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-3UTR	ENST00000456652	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
3UTR-intron	ENST00000456652	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350878	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350878	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000350878	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000350878	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000498066	ENST00000325642		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000498066	ENST00000529574		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-3UTR	ENST00000498066	ENST00000395076		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000498066	ENST00000325658		ChiTaRS3.1			BF435544	MAP4K4	chr2	102508371	-	PPM1A	chr14	60764806	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266511	EWSR1	chr22	29684308	+	FLI1	chr11	128649485	+
3UTR-3UTR	ENST00000356978	ENST00000356978		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
3UTR-intron	ENST00000356978	ENST00000447653		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
3UTR-intron	ENST00000356978	ENST00000555132		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
3UTR-intron	ENST00000356978	ENST00000553542		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
3UTR-intron	ENST00000356978	ENST00000544280		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-3UTR	ENST00000447653	ENST00000356978		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000447653	ENST00000447653		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000447653	ENST00000555132		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000447653	ENST00000553542		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000447653	ENST00000544280		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-3UTR	ENST00000555132	ENST00000356978		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000555132	ENST00000447653		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000555132	ENST00000555132		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000555132	ENST00000553542		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000555132	ENST00000544280		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-3UTR	ENST00000553542	ENST00000356978		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000553542	ENST00000447653		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000553542	ENST00000555132		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000553542	ENST00000553542		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000553542	ENST00000544280		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-3UTR	ENST00000544280	ENST00000356978		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000544280	ENST00000447653		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000544280	ENST00000555132		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000544280	ENST00000553542		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000544280	ENST00000544280		ChiTaRS3.1			W26114	CALM1	chr14	90873821	-	CALM1	chr14	90874517	-
intron-intron	ENST00000437428	ENST00000293872		ChiTaRS3.1			BI911504	FAM157A	chr11	167796	-	LUC7L	chr16	312332	+
intron-intron	ENST00000437428	ENST00000337351		ChiTaRS3.1			BI911504	FAM157A	chr11	167796	-	LUC7L	chr16	312332	+
intron-intron	ENST00000437428	ENST00000397783		ChiTaRS3.1			BI911504	FAM157A	chr11	167796	-	LUC7L	chr16	312332	+
intron-intron	ENST00000437428	ENST00000397780		ChiTaRS3.1			BI911504	FAM157A	chr11	167796	-	LUC7L	chr16	312332	+
intron-intron	ENST00000437428	ENST00000494366		ChiTaRS3.1			BI911504	FAM157A	chr11	167796	-	LUC7L	chr16	312332	+
In-frame	ENST00000323345	ENST00000392302		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
In-frame	ENST00000323345	ENST00000368196		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
In-frame	ENST00000323345	ENST00000524377		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
In-frame	ENST00000323345	ENST00000358660		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5CDS-intron	ENST00000323345	ENST00000531606		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
3UTR-3CDS	ENST00000463740	ENST00000392302		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
3UTR-3CDS	ENST00000463740	ENST00000368196		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
3UTR-3CDS	ENST00000463740	ENST00000524377		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
3UTR-3CDS	ENST00000463740	ENST00000358660		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
3UTR-intron	ENST00000463740	ENST00000531606		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5UTR-3CDS	ENST00000315731	ENST00000392302		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5UTR-3CDS	ENST00000315731	ENST00000368196		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5UTR-3CDS	ENST00000315731	ENST00000524377		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5UTR-3CDS	ENST00000315731	ENST00000358660		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
5UTR-intron	ENST00000315731	ENST00000531606		ChiTaRS3.1			X06704	RPL7A	chr9	136215897	+	NTRK1	chr1	156844362	+
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY282403	MLLT3	chr9	20358126	-	KMT2A	chr11	118354734	+
3UTR-3CDS	ENST00000549114	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000549114	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000549114	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-3CDS	ENST00000341413	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000341413	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000341413	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-3CDS	ENST00000564537	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000564537	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
3UTR-intron	ENST00000564537	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-3CDS	ENST00000561546	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000561546	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000561546	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-3CDS	ENST00000564545	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000564545	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000564545	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
Frame-shit	ENST00000389703	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
5CDS-intron	ENST00000389703	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
5CDS-intron	ENST00000389703	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-3CDS	ENST00000569604	ENST00000374759		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000569604	ENST00000288439		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-intron	ENST00000569604	ENST00000546352		ChiTaRS3.1			DB345864	HAGHL	chr16	779428	-	SLC38A10	chr17	79220415	+
intron-5UTR	ENST00000491148	ENST00000491148		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-5UTR	ENST00000491148	ENST00000282957		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-intron	ENST00000491148	ENST00000498639		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-5UTR	ENST00000282957	ENST00000491148		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-5UTR	ENST00000282957	ENST00000282957		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-intron	ENST00000282957	ENST00000498639		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-5UTR	ENST00000498639	ENST00000491148		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-5UTR	ENST00000498639	ENST00000282957		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-intron	ENST00000498639	ENST00000498639		ChiTaRS3.1			BP325294	CPB1	chr3	148563073	+	CPB1	chr3	148545596	+
intron-3CDS	ENST00000177742	ENST00000366671		ChiTaRS3.1			BE928604	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000177742	ENST00000282549		ChiTaRS3.1			BE928604	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000366671		ChiTaRS3.1			BE928604	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
intron-3CDS	ENST00000397375	ENST00000282549		ChiTaRS3.1			BE928604	MRPS34	chr16	1822886	+	OTX1	chr2	63283328	+
5UTR-3CDS	ENST00000411990	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5UTR-3CDS	ENST00000411990	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5UTR-3CDS	ENST00000411990	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5UTR-3CDS	ENST00000411990	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5UTR-3CDS	ENST00000411990	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5UTR-3UTR	ENST00000411990	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367080	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367080	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367080	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367080	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367080	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5CDS-3UTR	ENST00000367080	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367079	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367079	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367079	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367079	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000367079	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5CDS-3UTR	ENST00000367079	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000545806	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000545806	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000545806	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000545806	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
Frame-shit	ENST00000545806	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
5CDS-3UTR	ENST00000545806	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000541914	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000541914	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000541914	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000541914	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000541914	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3UTR	ENST00000541914	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000473310	ENST00000411990		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000473310	ENST00000367080		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000473310	ENST00000367079		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000473310	ENST00000545806		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000473310	ENST00000541914		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3UTR	ENST00000473310	ENST00000473310		ChiTaRS3.1			W27604	PFKFB2	chr1	207236026	-	PFKFB2	chr1	207242791	+
intron-3CDS	ENST00000297785	ENST00000297785		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3CDS	ENST00000297785	ENST00000376939		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-5UTR	ENST00000297785	ENST00000482210		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3CDS	ENST00000376939	ENST00000297785		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3CDS	ENST00000376939	ENST00000376939		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-5UTR	ENST00000376939	ENST00000482210		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3CDS	ENST00000482210	ENST00000297785		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3CDS	ENST00000482210	ENST00000376939		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-5UTR	ENST00000482210	ENST00000482210		ChiTaRS3.1			DA896624	ALDH1A1	chr9	75531935	-	ALDH1A1	chr9	75540477	-
intron-3UTR	ENST00000377044	ENST00000377044		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377044	ENST00000377066		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000377044	ENST00000396272		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377066	ENST00000377044		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377066	ENST00000377066		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000377066	ENST00000396272		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000396272	ENST00000377044		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000396272	ENST00000377066		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000396272	ENST00000396272		ChiTaRS3.1			N93124	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-5UTR	ENST00000378609	ENST00000394077		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-5UTR	ENST00000378609	ENST00000495401		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-5UTR	ENST00000378609	ENST00000469605		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-5UTR	ENST00000472614	ENST00000394077		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-5UTR	ENST00000472614	ENST00000495401		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-5UTR	ENST00000472614	ENST00000469605		ChiTaRS3.1			BE386644	GNB1	chr1	1756884	+	RPL24	chr3	101405535	-
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766244	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766244	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000303116	ENST00000498272		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-3UTR	ENST00000303116	ENST00000234827		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-intron	ENST00000303116	ENST00000371331		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-intron	ENST00000392238	ENST00000498272		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-3UTR	ENST00000392238	ENST00000234827		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-intron	ENST00000392238	ENST00000371331		ChiTaRS3.1			BE466904	FAM117B	chr2	203542045	-	TCEANC2	chr1	54565167	-
intron-3UTR	ENST00000443149	ENST00000426997		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-3UTR	ENST00000443149	ENST00000432605		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-3UTR	ENST00000399933	ENST00000426997		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-3UTR	ENST00000399933	ENST00000432605		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-3UTR	ENST00000381461	ENST00000426997		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-3UTR	ENST00000381461	ENST00000432605		ChiTaRS3.1			BC108654	KIAA2026	chr9	5922478	-	C2orf74	chr2	61391744	+
intron-intron	ENST00000380516	ENST00000380516		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000380516	ENST00000536328		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000380516	ENST00000557950		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000536328	ENST00000380516		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000536328	ENST00000536328		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000536328	ENST00000557950		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000557950	ENST00000380516		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000557950	ENST00000536328		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-intron	ENST00000557950	ENST00000557950		ChiTaRS3.1			AW835604	SLTM	chr15	59221421	+	SLTM	chr15	59219746	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766254	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766254	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000590898	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000590898	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000399022	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000337059	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000357384	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588737	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000319040	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000590898		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000399022		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000337059		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000357384		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000588737		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000319040		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-intron	ENST00000588459	ENST00000588459		ChiTaRS3.1			DB343204	RPRD1A	chr18	33599256	+	RPRD1A	chr18	33597124	+
intron-5UTR	ENST00000314100	ENST00000486455		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000314100	ENST00000318316		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000314100	ENST00000483681		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000314100	ENST00000394549		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000481247	ENST00000486455		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000481247	ENST00000318316		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000481247	ENST00000483681		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000481247	ENST00000394549		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000419706	ENST00000486455		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000419706	ENST00000318316		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000419706	ENST00000483681		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000419706	ENST00000394549		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000408958	ENST00000486455		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000408958	ENST00000318316		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000408958	ENST00000483681		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000408958	ENST00000394549		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000403056	ENST00000486455		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000403056	ENST00000318316		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000403056	ENST00000483681		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
intron-5UTR	ENST00000403056	ENST00000394549		ChiTaRS3.1			U75744	BTBD9	chr6	38185685	-	DNASE1L3	chr3	58196646	-
3UTR-intron	ENST00000505035	ENST00000542066		ChiTaRS3.1			DB025124	C16orf82	chr16	27078735	+	DEF6	chr6	35286540	+
3UTR-intron	ENST00000505035	ENST00000316637		ChiTaRS3.1			DB025124	C16orf82	chr16	27078735	+	DEF6	chr6	35286540	+
3UTR-intron	ENST00000505035	ENST00000468102		ChiTaRS3.1			DB025124	C16orf82	chr16	27078735	+	DEF6	chr6	35286540	+
intron-3CDS	ENST00000377038	ENST00000377038		ChiTaRS3.1			BF203854	DFFA	chr1	10523604	-	DFFA	chr1	10523622	+
intron-3CDS	ENST00000377038	ENST00000377036		ChiTaRS3.1			BF203854	DFFA	chr1	10523604	-	DFFA	chr1	10523622	+
intron-3CDS	ENST00000377036	ENST00000377038		ChiTaRS3.1			BF203854	DFFA	chr1	10523604	-	DFFA	chr1	10523622	+
intron-3CDS	ENST00000377036	ENST00000377036		ChiTaRS3.1			BF203854	DFFA	chr1	10523604	-	DFFA	chr1	10523622	+
intron-intron	ENST00000572691	ENST00000367385		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000572691	ENST00000538004		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000572691	ENST00000367383		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000572691	ENST00000417895		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000576943	ENST00000367385		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000576943	ENST00000538004		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000576943	ENST00000367383		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
intron-intron	ENST00000576943	ENST00000417895		ChiTaRS3.1			DA645874	ZNF205-AS1	chr16	3162644	+	NEK7	chr1	198138763	+
Frame-shit	ENST00000228955	ENST00000228955		ChiTaRS3.1			BI021254	GTF2H3	chr12	124144440	+	GTF2H3	chr12	124144375	-
Frame-shit	ENST00000228955	ENST00000543341		ChiTaRS3.1			BI021254	GTF2H3	chr12	124144440	+	GTF2H3	chr12	124144375	-
Frame-shit	ENST00000543341	ENST00000228955		ChiTaRS3.1			BI021254	GTF2H3	chr12	124144440	+	GTF2H3	chr12	124144375	-
Frame-shit	ENST00000543341	ENST00000543341		ChiTaRS3.1			BI021254	GTF2H3	chr12	124144440	+	GTF2H3	chr12	124144375	-
intron-3UTR	ENST00000350997	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000350997	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-3UTR	ENST00000536991	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000536991	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-3UTR	ENST00000433932	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000433932	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-3UTR	ENST00000460649	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000460649	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-3UTR	ENST00000542506	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000542506	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-3UTR	ENST00000541683	ENST00000398399		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
intron-intron	ENST00000541683	ENST00000383698		ChiTaRS3.1			N67724	FADS1	chr11	61569808	+	VGLL3	chr3	86994531	+
Frame-shit	ENST00000281282	ENST00000332582		ChiTaRS3.1			DA235294	CGNL1	chr15	57730418	+	GPR173	chrX	53106643	+
intron-3CDS	ENST00000557813	ENST00000332582		ChiTaRS3.1			DA235294	CGNL1	chr15	57730418	+	GPR173	chrX	53106643	+
intron-3UTR	ENST00000424085	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000424085	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000424085	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000424085	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000257075	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000257075	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000257075	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000257075	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373747	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373747	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373747	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373747	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000426105	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000426105	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000426105	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000426105	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000440538	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000440538	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000440538	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000440538	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373741	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373741	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373741	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373741	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000423018	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000423018	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000423018	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000423018	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373742	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373742	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000373742	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000373742	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000490546	ENST00000424085		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000490546	ENST00000257075		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-3UTR	ENST00000490546	ENST00000373747		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000426105		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000440538		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000373741		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000423018		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000373742		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000490546	ENST00000490546		ChiTaRS3.1			CB243224	PUM1	chr1	31404636	+	PUM1	chr1	31404697	-
intron-intron	ENST00000297056	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000297056		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000425398		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000436575		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000428902		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000421761		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000479922		ChiTaRS3.1			BE857164	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
3UTR-intron	ENST00000404338	ENST00000337907		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
3UTR-intron	ENST00000404338	ENST00000377464		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
3UTR-intron	ENST00000404338	ENST00000400907		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
3UTR-intron	ENST00000404338	ENST00000400908		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
3UTR-intron	ENST00000404338	ENST00000476556		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
3UTR-intron	ENST00000404338	ENST00000460659		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000337907		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000377464		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000400907		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000400908		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000476556		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000598548	ENST00000460659		ChiTaRS3.1			BE466544	ARHGAP35	chr19	47507598	-	RERE	chr1	8761748	+
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			DB343374	RTN4	chr2	55205315	+	RTN4	chr2	55201726	+
intron-3UTR	ENST00000394532	ENST00000394532		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000394532	ENST00000309032		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000394532	ENST00000544785		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-intron	ENST00000394532	ENST00000394531		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000309032	ENST00000394532		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000309032	ENST00000309032		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000309032	ENST00000544785		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-intron	ENST00000309032	ENST00000394531		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000544785	ENST00000394532		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000544785	ENST00000309032		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000544785	ENST00000544785		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-intron	ENST00000544785	ENST00000394531		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000394531	ENST00000394532		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000394531	ENST00000309032		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-3UTR	ENST00000394531	ENST00000544785		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-intron	ENST00000394531	ENST00000394531		ChiTaRS3.1			AW883934	BAD	chr11	64037752	+	BAD	chr11	64037634	-
intron-5UTR	ENST00000379245	ENST00000382582		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000355994		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397875		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397866		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397865		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000527041		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-intron	ENST00000379245	ENST00000359645		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000528160		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397869		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000354542		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000526111		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000580402		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000579129		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000578193		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397863		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000397860		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000379245	ENST00000487778		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000382582		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000355994		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397875		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397866		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397865		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000527041		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-intron	ENST00000305852	ENST00000359645		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000528160		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397869		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000354542		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000526111		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000580402		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000579129		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000578193		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397863		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000397860		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000305852	ENST00000487778		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000382582		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000355994		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397875		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397866		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397865		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000527041		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-intron	ENST00000405912	ENST00000359645		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000528160		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397869		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000354542		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000526111		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000580402		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000579129		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000578193		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397863		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000397860		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000405912	ENST00000487778		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000382582		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000355994		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397875		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397866		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397865		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000527041		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-intron	ENST00000487919	ENST00000359645		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000528160		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397869		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000354542		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000526111		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000580402		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000579129		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000578193		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397863		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000397860		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-5UTR	ENST00000487919	ENST00000487778		ChiTaRS3.1			DA132184	FEZ2	chr2	36789467	-	MBP	chr18	74729011	-
intron-intron	ENST00000481195	ENST00000263967		ChiTaRS3.1			BI870214	PPP2CA	chr5	133532781	-	PIK3CA	chr3	178893521	-
intron-intron	ENST00000231504	ENST00000263967		ChiTaRS3.1			BI870214	PPP2CA	chr5	133532781	-	PIK3CA	chr3	178893521	-
intron-intron	ENST00000476844	ENST00000295049		ChiTaRS3.1			CD518664	FHIT	chr3	60323139	-	RFTN2	chr2	198512770	+
intron-intron	ENST00000492590	ENST00000295049		ChiTaRS3.1			CD518664	FHIT	chr3	60323139	-	RFTN2	chr2	198512770	+
intron-intron	ENST00000466788	ENST00000295049		ChiTaRS3.1			CD518664	FHIT	chr3	60323139	-	RFTN2	chr2	198512770	+
intron-intron	ENST00000468189	ENST00000295049		ChiTaRS3.1			CD518664	FHIT	chr3	60323139	-	RFTN2	chr2	198512770	+
intron-intron	ENST00000341848	ENST00000295049		ChiTaRS3.1			CD518664	FHIT	chr3	60323139	-	RFTN2	chr2	198512770	+
5CDS-intron	ENST00000366510	ENST00000513032		ChiTaRS3.1			BF376184	SCCPDH	chr1	246927630	+	ARAP2	chr4	36130998	-
5CDS-intron	ENST00000366510	ENST00000303965		ChiTaRS3.1			BF376184	SCCPDH	chr1	246927630	+	ARAP2	chr4	36130998	-
intron-intron	ENST00000033079	ENST00000033079		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000033079	ENST00000425075		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000033079	ENST00000420893		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000425075	ENST00000033079		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000425075	ENST00000425075		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000425075	ENST00000420893		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000420893	ENST00000033079		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000420893	ENST00000425075		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
intron-intron	ENST00000420893	ENST00000420893		ChiTaRS3.1			BX503484	FAM13B	chr5	137282996	-	FAM13B	chr5	137282831	+
In-frame	ENST00000356634	ENST00000356634		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000356634	ENST00000400181		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000356634	ENST00000542151		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000400181	ENST00000356634		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000400181	ENST00000400181		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000400181	ENST00000542151		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000542151	ENST00000356634		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000542151	ENST00000400181		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
In-frame	ENST00000542151	ENST00000542151		ChiTaRS3.1			BE936384	KDM1A	chr1	23406088	+	KDM1A	chr1	23408000	-
3UTR-3CDS	ENST00000001008	ENST00000256854		ChiTaRS3.1			AW993534	FKBP4	chr12	2912600	-	NARS	chr18	55282904	-
3UTR-5UTR	ENST00000001008	ENST00000423481		ChiTaRS3.1			AW993534	FKBP4	chr12	2912600	-	NARS	chr18	55282904	-
intron-3CDS	ENST00000540260	ENST00000256854		ChiTaRS3.1			AW993534	FKBP4	chr12	2912600	-	NARS	chr18	55282904	-
intron-5UTR	ENST00000540260	ENST00000423481		ChiTaRS3.1			AW993534	FKBP4	chr12	2912600	-	NARS	chr18	55282904	-
intron-intron	ENST00000199320	ENST00000429054		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
intron-intron	ENST00000199320	ENST00000259939		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
intron-intron	ENST00000199320	ENST00000486622		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
intron-intron	ENST00000506390	ENST00000429054		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
intron-intron	ENST00000506390	ENST00000259939		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
intron-intron	ENST00000506390	ENST00000486622		ChiTaRS3.1			BE837524	DIMT1	chr5	61686310	+	RNF144B	chr6	18389702	-
5CDS-3UTR	ENST00000495514	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000495514	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000495514	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000495514	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000495514	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000495514	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000273395	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000273395	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000273395	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000273395	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000273395	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000273395	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000355385	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000355385	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-3UTR	ENST00000355385	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000355385	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000355385	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
5CDS-intron	ENST00000355385	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000485230	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000485230	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000485230	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000485230	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000485230	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000485230	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000484034	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000484034	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-3UTR	ENST00000484034	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000484034	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000484034	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000484034	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-3UTR	ENST00000497495	ENST00000495514		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-3UTR	ENST00000497495	ENST00000273395		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-3UTR	ENST00000497495	ENST00000355385		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-intron	ENST00000497495	ENST00000485230		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-intron	ENST00000497495	ENST00000484034		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
3UTR-intron	ENST00000497495	ENST00000497495		ChiTaRS3.1			BM991714	BOC	chr3	112997042	-	BOC	chr3	113005869	-
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			BF196944	ANKRD17	chr4	74115326	+	ANKRD17	chr4	74098733	+
3UTR-intron	ENST00000356978	ENST00000295851		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261017		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000430418		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000424558		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261016		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000422511		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000430574		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000356978	ENST00000261018		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000295851		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261017		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000430418		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000424558		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261016		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000422511		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000430574		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000447653	ENST00000261018		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000295851		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261017		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000430418		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000424558		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261016		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000422511		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000430574		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000555132	ENST00000261018		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000295851		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261017		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000430418		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000424558		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261016		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000422511		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000430574		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000553542	ENST00000261018		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000295851		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261017		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000430418		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000424558		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261016		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000422511		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000430574		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
3UTR-intron	ENST00000544280	ENST00000261018		ChiTaRS3.1			CF891084	CALM1	chr14	90871093	-	ABI2	chr2	204234749	-
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			BF509834	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
5CDS-3UTR	ENST00000299576	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000299576	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000299576	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000299576	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-3UTR	ENST00000309377	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309377	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309377	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309377	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-3UTR	ENST00000309357	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309357	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309357	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000309357	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-3UTR	ENST00000529876	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000529876	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000529876	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000529876	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-3UTR	ENST00000525005	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000525005	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000525005	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000525005	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-3UTR	ENST00000534506	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000534506	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000534506	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-intron	ENST00000534506	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-3UTR	ENST00000396648	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000396648	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000396648	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000396648	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-3UTR	ENST00000534147	ENST00000216554		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000534147	ENST00000558506		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000534147	ENST00000560200		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
5CDS-intron	ENST00000534147	ENST00000392715		ChiTaRS3.1			BI058894	AKIP1	chr11	8941010	-	EIF5	chr14	103810593	-
intron-3UTR	ENST00000463284	ENST00000397109		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000463284	ENST00000337354		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000463284	ENST00000350697		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000463284	ENST00000397117		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000463284	ENST00000383801		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000463284	ENST00000492602		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000358435	ENST00000397109		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000358435	ENST00000337354		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000358435	ENST00000350697		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000358435	ENST00000397117		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000358435	ENST00000383801		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000358435	ENST00000492602		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000405021	ENST00000397109		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000405021	ENST00000337354		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000405021	ENST00000350697		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000405021	ENST00000397117		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000405021	ENST00000383801		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000405021	ENST00000492602		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000372879	ENST00000397109		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000372879	ENST00000337354		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000372879	ENST00000350697		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000372879	ENST00000397117		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-3UTR	ENST00000372879	ENST00000383801		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
intron-intron	ENST00000372879	ENST00000492602		ChiTaRS3.1			DW441224	TOMM7	chr7	22857627	-	SEC13	chr3	10342887	-
Frame-shit	ENST00000357607	ENST00000357607		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
Frame-shit	ENST00000357607	ENST00000348343		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000357607	ENST00000463891		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000357607	ENST00000342014		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
Frame-shit	ENST00000348343	ENST00000357607		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
Frame-shit	ENST00000348343	ENST00000348343		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000348343	ENST00000463891		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000348343	ENST00000342014		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
intron-3CDS	ENST00000463891	ENST00000357607		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
intron-3CDS	ENST00000463891	ENST00000348343		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
intron-intron	ENST00000463891	ENST00000463891		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
intron-intron	ENST00000463891	ENST00000342014		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
Frame-shit	ENST00000342014	ENST00000357607		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
Frame-shit	ENST00000342014	ENST00000348343		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000342014	ENST00000463891		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
5CDS-intron	ENST00000342014	ENST00000342014		ChiTaRS3.1			BE180434	BMX	chrX	15560321	+	BMX	chrX	15565027	-
intron-intron	ENST00000360909	ENST00000360909		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000360909	ENST00000351081		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000360909	ENST00000395125		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000360909	ENST00000556135		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000360909	ENST00000553966		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000351081	ENST00000360909		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000351081	ENST00000351081		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000351081	ENST00000395125		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000351081	ENST00000556135		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000351081	ENST00000553966		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000395125	ENST00000360909		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000395125	ENST00000351081		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000395125	ENST00000395125		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000395125	ENST00000556135		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000395125	ENST00000553966		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000556135	ENST00000360909		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000556135	ENST00000351081		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000556135	ENST00000395125		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000556135	ENST00000556135		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000556135	ENST00000553966		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000553966	ENST00000360909		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000553966	ENST00000351081		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000553966	ENST00000395125		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000553966	ENST00000556135		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-intron	ENST00000553966	ENST00000553966		ChiTaRS3.1			BF748744	DAAM1	chr14	59757410	+	DAAM1	chr14	59757434	-
intron-3CDS	ENST00000314888	ENST00000314888		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000314888	ENST00000540444		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-intron	ENST00000314888	ENST00000464379		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000540444	ENST00000314888		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000540444	ENST00000540444		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-intron	ENST00000540444	ENST00000464379		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000464379	ENST00000314888		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000464379	ENST00000540444		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-intron	ENST00000464379	ENST00000464379		ChiTaRS3.1			BE695654	TLN1	chr9	35710651	-	TLN1	chr9	35710606	+
intron-3CDS	ENST00000371130	ENST00000259254		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000371130	ENST00000356887		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000371130	ENST00000409836		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000371130	ENST00000464053		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000259254		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000356887		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000422452	ENST00000409836		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000422452	ENST00000464053		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000259254		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000356887		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3CDS	ENST00000461429	ENST00000409836		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000461429	ENST00000464053		ChiTaRS3.1			N38974	TENM1	chrX	123554543	+	GYPC	chr2	127453519	+
intron-3UTR	ENST00000434748	ENST00000441802		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
intron-intron	ENST00000434748	ENST00000512347		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
intron-3UTR	ENST00000261673	ENST00000441802		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
intron-intron	ENST00000261673	ENST00000512347		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
intron-3UTR	ENST00000542061	ENST00000441802		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
intron-intron	ENST00000542061	ENST00000512347		ChiTaRS3.1			AW900184	FBRSL1	chr12	133093000	-	FAT1	chr4	187509698	+
In-frame	ENST00000398022	ENST00000398022		ChiTaRS3.1			W22794	TM9SF4	chr20	30747807	-	TM9SF4	chr20	30749140	+
In-frame	ENST00000398022	ENST00000217315		ChiTaRS3.1			W22794	TM9SF4	chr20	30747807	-	TM9SF4	chr20	30749140	+
In-frame	ENST00000217315	ENST00000398022		ChiTaRS3.1			W22794	TM9SF4	chr20	30747807	-	TM9SF4	chr20	30749140	+
In-frame	ENST00000217315	ENST00000217315		ChiTaRS3.1			W22794	TM9SF4	chr20	30747807	-	TM9SF4	chr20	30749140	+
Frame-shit	ENST00000453658	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000453658	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000453658	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000377259	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-intron	ENST00000377259	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000377245	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000377245	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000348208	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000348208	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000265384	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000265384	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000535702	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000535702	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
Frame-shit	ENST00000539225	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
5CDS-intron	ENST00000539225	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000505330		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000504381		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000507488		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000393221		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000533801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000510168		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000508532		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000504948		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000513801		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000328560		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000428331		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000359644		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-3CDS	ENST00000498204	ENST00000422190		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-intron	ENST00000498204	ENST00000509150		ChiTaRS3.1			CV372064	TJP2	chr9	71851974	-	ATP2C1	chr3	130673881	-
intron-intron	ENST00000356495	ENST00000358781		ChiTaRS3.1			CD724294	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-intron	ENST00000487208	ENST00000358781		ChiTaRS3.1			CD724294	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-5UTR	ENST00000598155	ENST00000261845		ChiTaRS3.1			L77964	SYMPK	chr19	46351190	-	MAPK6	chr15	52311447	+
intron-intron	ENST00000598155	ENST00000558841		ChiTaRS3.1			L77964	SYMPK	chr19	46351190	-	MAPK6	chr15	52311447	+
intron-5UTR	ENST00000245934	ENST00000261845		ChiTaRS3.1			L77964	SYMPK	chr19	46351190	-	MAPK6	chr15	52311447	+
intron-intron	ENST00000245934	ENST00000558841		ChiTaRS3.1			L77964	SYMPK	chr19	46351190	-	MAPK6	chr15	52311447	+
intron-intron	ENST00000594022	ENST00000594022		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000594022	ENST00000358491		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000594022	ENST00000597078		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000358491	ENST00000594022		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000358491	ENST00000358491		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000358491	ENST00000597078		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000597078	ENST00000594022		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000597078	ENST00000358491		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000597078	ENST00000597078		ChiTaRS3.1			H47694	ZNF429	chr19	21689853	-	ZNF429	chr19	21690784	-
intron-intron	ENST00000265056	ENST00000414318		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000265056	ENST00000253692		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000265056	ENST00000429383		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000265056	ENST00000446818		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000265056	ENST00000429924		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000468414	ENST00000414318		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000468414	ENST00000253692		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000468414	ENST00000429383		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000468414	ENST00000446818		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000468414	ENST00000429924		ChiTaRS3.1			BF364784	MCM2	chr3	127330850	-	TBC1D5	chr3	17768989	+
intron-intron	ENST00000389484	ENST00000536525		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000389484	ENST00000397909		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000389484	ENST00000228327		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000389484	ENST00000266692		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000389484	ENST00000552300		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000389484	ENST00000541270		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000536525		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000397909		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000228327		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000266692		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000552300		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
intron-intron	ENST00000486364	ENST00000541270		ChiTaRS3.1			DQ177307	LRP1B	chr2	142408688	+	NAV3	chr12	78473144	-
5CDS-3UTR	ENST00000225430	ENST00000336861		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000225430	ENST00000246635		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000225430	ENST00000587544		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000225430	ENST00000587118		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000579374	ENST00000336861		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000579374	ENST00000246635		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000579374	ENST00000587544		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000579374	ENST00000587118		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000579260	ENST00000336861		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000579260	ENST00000246635		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000579260	ENST00000587544		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000579260	ENST00000587118		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000582193	ENST00000336861		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-3UTR	ENST00000582193	ENST00000246635		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000582193	ENST00000587544		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
5CDS-intron	ENST00000582193	ENST00000587118		ChiTaRS3.1			BE720744	RPL19	chr17	37360412	-	KRT13	chr17	39657355	-
intron-3UTR	ENST00000409261	ENST00000534336		ChiTaRS3.1			EY123422	NCKAP5	chr2	134048322	+	MALAT1	chr11	65270432	-
intron-3UTR	ENST00000409213	ENST00000534336		ChiTaRS3.1			EY123422	NCKAP5	chr2	134048322	+	MALAT1	chr11	65270432	-
intron-3UTR	ENST00000405974	ENST00000534336		ChiTaRS3.1			EY123422	NCKAP5	chr2	134048322	+	MALAT1	chr11	65270432	-
intron-3UTR	ENST00000317721	ENST00000534336		ChiTaRS3.1			EY123422	NCKAP5	chr2	134048322	+	MALAT1	chr11	65270432	-
intron-3UTR	ENST00000473859	ENST00000534336		ChiTaRS3.1			EY123422	NCKAP5	chr2	134048322	+	MALAT1	chr11	65270432	-
intron-3CDS	ENST00000265348	ENST00000265348		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000265348	ENST00000535468		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000265348	ENST00000478630		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000535468	ENST00000265348		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000535468	ENST00000535468		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000535468	ENST00000478630		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000478630	ENST00000265348		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-3CDS	ENST00000478630	ENST00000535468		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000478630	ENST00000478630		ChiTaRS3.1			BI053744	CUL7	chr6	43018039	-	CUL7	chr6	43020345	-
intron-intron	ENST00000301964	ENST00000479212		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000301964	ENST00000358160		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000301964	ENST00000452134		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000301964	ENST00000472026		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000301964	ENST00000440446		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000440161	ENST00000479212		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000440161	ENST00000358160		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000440161	ENST00000452134		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000440161	ENST00000472026		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000440161	ENST00000440446		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000343450	ENST00000479212		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000343450	ENST00000358160		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000343450	ENST00000452134		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000343450	ENST00000472026		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000343450	ENST00000440446		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000492635	ENST00000479212		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000492635	ENST00000358160		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000492635	ENST00000452134		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000492635	ENST00000472026		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-3UTR	ENST00000492635	ENST00000440446		ChiTaRS3.1			BF057854	TADA3	chr3	9821760	+	GRAMD1C	chr3	113665918	-
intron-intron	ENST00000258341	ENST00000258341		ChiTaRS3.1			AW856574	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000258341	ENST00000466964		ChiTaRS3.1			AW856574	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000258341		ChiTaRS3.1			AW856574	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-intron	ENST00000466964	ENST00000466964		ChiTaRS3.1			AW856574	LAMC1	chr1	183048096	-	LAMC1	chr1	183003441	+
intron-3CDS	ENST00000407008	ENST00000407008		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000407008	ENST00000583517		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000407008	ENST00000582037		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-3CDS	ENST00000583517	ENST00000407008		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000583517	ENST00000583517		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000583517	ENST00000582037		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-3CDS	ENST00000582037	ENST00000407008		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000582037	ENST00000583517		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000582037	ENST00000582037		ChiTaRS3.1			BM450424	NLK	chr17	26518047	-	NLK	chr17	26518092	+
intron-intron	ENST00000455697	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000455697	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000445766	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000548696	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000345127	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552240	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371227		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371249		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000306402		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000353505		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371246		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000347291		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000393949		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371247		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000607232		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371245		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000361941		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000277982		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000354106		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371239		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000371241		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-intron	ENST00000552200	ENST00000474353		ChiTaRS3.1			BF365814	PRICKLE1	chr12	42902469	-	SORBS1	chr10	97155063	-
intron-3CDS	ENST00000389395	ENST00000389395		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000389395	ENST00000398558		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000389395	ENST00000355415		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-intron	ENST00000389395	ENST00000591878		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000398558	ENST00000389395		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000398558	ENST00000398558		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000398558	ENST00000355415		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-intron	ENST00000398558	ENST00000591878		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000355415	ENST00000389395		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000355415	ENST00000398558		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000355415	ENST00000355415		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-intron	ENST00000355415	ENST00000591878		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000591878	ENST00000389395		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000591878	ENST00000398558		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-3CDS	ENST00000591878	ENST00000355415		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-intron	ENST00000591878	ENST00000591878		ChiTaRS3.1			CB529014	MFSD12	chr19	3544555	+	MFSD12	chr19	3547297	-
intron-5UTR	ENST00000328557	ENST00000376835		ChiTaRS3.1			BM564264	NRROS	chr3	196383703	-	CST7	chr20	24929924	+
intron-5UTR	ENST00000328557	ENST00000480798		ChiTaRS3.1			BM564264	NRROS	chr3	196383703	-	CST7	chr20	24929924	+
Frame-shit	ENST00000265742	ENST00000265742		ChiTaRS3.1			BE172484	ANKIB1	chr7	91936721	-	ANKIB1	chr7	91936808	+
5CDS-intron	ENST00000265742	ENST00000486698		ChiTaRS3.1			BE172484	ANKIB1	chr7	91936721	-	ANKIB1	chr7	91936808	+
intron-3CDS	ENST00000486698	ENST00000265742		ChiTaRS3.1			BE172484	ANKIB1	chr7	91936721	-	ANKIB1	chr7	91936808	+
intron-intron	ENST00000486698	ENST00000486698		ChiTaRS3.1			BE172484	ANKIB1	chr7	91936721	-	ANKIB1	chr7	91936808	+
5CDS-intron	ENST00000343242	ENST00000259371		ChiTaRS3.1			BC060834	MAFK	chr7	1579941	+	DAB2IP	chr9	124360965	-
5CDS-intron	ENST00000343242	ENST00000408936		ChiTaRS3.1			BC060834	MAFK	chr7	1579941	+	DAB2IP	chr9	124360965	-
5CDS-intron	ENST00000343242	ENST00000309989		ChiTaRS3.1			BC060834	MAFK	chr7	1579941	+	DAB2IP	chr9	124360965	-
5CDS-intron	ENST00000343242	ENST00000487716		ChiTaRS3.1			BC060834	MAFK	chr7	1579941	+	DAB2IP	chr9	124360965	-
intron-3UTR	ENST00000174618	ENST00000299084		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-intron	ENST00000174618	ENST00000561205		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-3UTR	ENST00000575374	ENST00000299084		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-intron	ENST00000575374	ENST00000561205		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-3UTR	ENST00000575394	ENST00000299084		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-intron	ENST00000575394	ENST00000561205		ChiTaRS3.1			BX108504	MNT	chr17	2291249	-	SPRED1	chr15	38646176	+
intron-intron	ENST00000539563	ENST00000539563		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000539563	ENST00000490035		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000539563	ENST00000498645		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000490035	ENST00000539563		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000490035	ENST00000490035		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000490035	ENST00000498645		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000498645	ENST00000539563		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000498645	ENST00000490035		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
intron-intron	ENST00000498645	ENST00000498645		ChiTaRS3.1			DA568784	LSAMP	chr3	115535161	-	LSAMP	chr3	115559759	-
5UTR-5UTR	ENST00000248899	ENST00000248899		ChiTaRS3.1			X77094	NCF4	chr22	37257109	-	NCF4	chr22	37257155	+
5UTR-5UTR	ENST00000248899	ENST00000397147		ChiTaRS3.1			X77094	NCF4	chr22	37257109	-	NCF4	chr22	37257155	+
5UTR-5UTR	ENST00000397147	ENST00000248899		ChiTaRS3.1			X77094	NCF4	chr22	37257109	-	NCF4	chr22	37257155	+
5UTR-5UTR	ENST00000397147	ENST00000397147		ChiTaRS3.1			X77094	NCF4	chr22	37257109	-	NCF4	chr22	37257155	+
intron-3UTR	ENST00000504926	ENST00000249269		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000504926	ENST00000428154		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000504926	ENST00000420236		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-3UTR	ENST00000306315	ENST00000249269		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000306315	ENST00000428154		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000306315	ENST00000420236		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-3UTR	ENST00000513985	ENST00000249269		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000513985	ENST00000428154		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-intron	ENST00000513985	ENST00000420236		ChiTaRS3.1			DA111094	ZNF608	chr5	124004429	-	PMPCB	chr7	102953469	+
intron-3UTR	ENST00000466266	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000466266	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000466266	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000466266	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000466266	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000428286	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000428286	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000428286	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000428286	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000428286	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376718	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376718	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376718	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376718	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000376718	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000443509	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000443509	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000443509	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000443509	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000443509	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000223609	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000223609	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000223609	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000223609	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000223609	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376713	ENST00000528443		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376713	ENST00000271583		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376713	ENST00000606911		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-3UTR	ENST00000376713	ENST00000435319		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000376713	ENST00000474875		ChiTaRS3.1			BX640664	PRUNE2	chr9	79299697	+	TOR1AIP1	chr1	179888370	+
intron-intron	ENST00000272444	ENST00000283632		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000272444	ENST00000472843		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000480948	ENST00000283632		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000480948	ENST00000472843		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000443070	ENST00000283632		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000443070	ENST00000472843		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000377706	ENST00000283632		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000377706	ENST00000472843		ChiTaRS3.1			DB345704	DUSP11	chr2	73989756	+	RMND5A	chr2	86986260	-
intron-intron	ENST00000379589	ENST00000521746		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-3UTR	ENST00000379589	ENST00000420274		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-3UTR	ENST00000379589	ENST00000388745		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-intron	ENST00000495922	ENST00000521746		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-3UTR	ENST00000495922	ENST00000420274		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-3UTR	ENST00000495922	ENST00000388745		ChiTaRS3.1			BM719554	LHFP	chr13	39917249	+	PLEKHA2	chr8	38831104	+
intron-3CDS	ENST00000419821	ENST00000356433		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000419821	ENST00000600579		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000419821	ENST00000205143		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3CDS	ENST00000392533	ENST00000356433		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000392533	ENST00000600579		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000392533	ENST00000205143		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3CDS	ENST00000537952	ENST00000356433		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000537952	ENST00000600579		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000537952	ENST00000205143		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3CDS	ENST00000543709	ENST00000356433		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000543709	ENST00000600579		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000543709	ENST00000205143		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3CDS	ENST00000536979	ENST00000356433		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000536979	ENST00000600579		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-3UTR	ENST00000536979	ENST00000205143		ChiTaRS3.1			BC035504	TAOK3	chr12	118683880	-	DLL3	chr19	39989616	+
intron-intron	ENST00000239367	ENST00000369140		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-5UTR	ENST00000239367	ENST00000492824		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000239367	ENST00000361405		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000239367	ENST00000406732		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000239367	ENST00000439741		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000546019	ENST00000369140		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-5UTR	ENST00000546019	ENST00000492824		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000546019	ENST00000361405		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000546019	ENST00000406732		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000546019	ENST00000439741		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000463728	ENST00000369140		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-5UTR	ENST00000463728	ENST00000492824		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000463728	ENST00000361405		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000463728	ENST00000406732		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000463728	ENST00000439741		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000367368	ENST00000369140		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-5UTR	ENST00000367368	ENST00000492824		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000367368	ENST00000361405		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000367368	ENST00000406732		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
intron-intron	ENST00000367368	ENST00000439741		ChiTaRS3.1			BE718834	LRP11	chr6	150182439	+	MTMR11	chr1	149902682	+
3UTR-3CDS	ENST00000393078	ENST00000393078		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393078	ENST00000485588		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393078	ENST00000393080		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393078	ENST00000467132		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393078	ENST00000482740		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-3CDS	ENST00000485588	ENST00000393078		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-intron	ENST00000485588	ENST00000485588		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-intron	ENST00000485588	ENST00000393080		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-intron	ENST00000485588	ENST00000467132		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-intron	ENST00000485588	ENST00000482740		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-3CDS	ENST00000393080	ENST00000393078		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393080	ENST00000485588		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393080	ENST00000393080		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393080	ENST00000467132		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000393080	ENST00000482740		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-3CDS	ENST00000467132	ENST00000393078		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000467132	ENST00000485588		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000467132	ENST00000393080		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000467132	ENST00000467132		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000467132	ENST00000482740		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-3CDS	ENST00000482740	ENST00000393078		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000482740	ENST00000485588		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000482740	ENST00000393080		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000482740	ENST00000467132		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
3UTR-intron	ENST00000482740	ENST00000482740		ChiTaRS3.1			BF326784	SERPINA3	chr14	95090209	-	SERPINA3	chr14	95090096	+
intron-3CDS	ENST00000594602	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000594602	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000594602	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000594602	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000594602	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000438150	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000438150	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000438150	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000438150	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000438150	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000457749	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000457749	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000457749	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000457749	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000457749	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000360272	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000360272	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000360272	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000360272	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000360272	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000414252	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000414252	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000414252	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000414252	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000414252	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000339844	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000339844	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000339844	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000339844	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000339844	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000464469	ENST00000435070		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000464469	ENST00000456847		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-3CDS	ENST00000464469	ENST00000266679		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000464469	ENST00000550987		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000464469	ENST00000551516		ChiTaRS3.1			BM970434	ZNF28	chr19	53317159	-	CPSF6	chr12	69652620	-
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000448637	ENST00000312675		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000448637	ENST00000543006		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000312675	ENST00000312675		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000312675	ENST00000543006		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000543006	ENST00000312675		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000543006	ENST00000543006		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000471917	ENST00000312675		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000471917	ENST00000543006		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			AW862224	LPP	chr3	187899625	-	LPP	chr3	187900142	-
intron-5UTR	ENST00000533760	ENST00000391918		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000291295		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000597743		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-3UTR	ENST00000533760	ENST00000477244		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000598871		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000594523		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000599839		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000533760	ENST00000596362		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000391918		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000291295		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000597743		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-3UTR	ENST00000397957	ENST00000477244		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000598871		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000594523		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000599839		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000397957	ENST00000596362		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000391918		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000291295		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000597743		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-3UTR	ENST00000316851	ENST00000477244		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000598871		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000594523		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000599839		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000316851	ENST00000596362		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000391918		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000291295		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000597743		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-3UTR	ENST00000401611	ENST00000477244		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000598871		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000594523		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000599839		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-5UTR	ENST00000401611	ENST00000596362		ChiTaRS3.1			T05484	NCAM1	chr11	113094797	-	CALM3	chr19	47111512	+
intron-3UTR	ENST00000538309	ENST00000572173		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-intron	ENST00000538309	ENST00000572992		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538309	ENST00000381820		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538309	ENST00000312499		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538309	ENST00000576027		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538839	ENST00000572173		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-intron	ENST00000538839	ENST00000572992		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538839	ENST00000381820		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538839	ENST00000312499		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000538839	ENST00000576027		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000290597	ENST00000572173		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-intron	ENST00000290597	ENST00000572992		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000290597	ENST00000381820		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000290597	ENST00000312499		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000290597	ENST00000576027		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000375341	ENST00000572173		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-intron	ENST00000375341	ENST00000572992		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000375341	ENST00000381820		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000375341	ENST00000312499		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000375341	ENST00000576027		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000454547	ENST00000572173		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-intron	ENST00000454547	ENST00000572992		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000454547	ENST00000381820		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000454547	ENST00000312499		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3UTR	ENST00000454547	ENST00000576027		ChiTaRS3.1			N49444	ALDH4A1	chr1	19198070	+	RMI2	chr16	11445190	+
intron-3CDS	ENST00000546474	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000546474	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000546474	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000546474	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000546474	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000327359	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000327359	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000327359	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000327359	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000327359	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000440513	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000440513	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000440513	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000440513	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000440513	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000392557	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000392557	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000392557	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000392557	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000392557	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379937	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379937	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379937	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379937	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000379937	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000547530	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000547530	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000547530	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000547530	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000547530	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000446501	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000446501	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000446501	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000446501	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000446501	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379932	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379932	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379932	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000379932	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000379932	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000551787	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000551787	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000551787	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000551787	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000551787	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000549044	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000549044	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000549044	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000549044	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000549044	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000548421	ENST00000382778		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000548421	ENST00000351808		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000548421	ENST00000319980		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-3CDS	ENST00000548421	ENST00000537103		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
intron-intron	ENST00000548421	ENST00000461115		ChiTaRS3.1			BE837644	BRF1	chr14	105716885	-	IFT88	chr13	21245137	-
In-frame	ENST00000406925	ENST00000405694		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000406925	ENST00000368607		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000406925	ENST00000271889		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000406925	ENST00000368601		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000406925	ENST00000368603		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000406925	ENST00000368600		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-3UTR	ENST00000406925	ENST00000468845		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-3CDS	ENST00000498605	ENST00000405694		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-3CDS	ENST00000498605	ENST00000368607		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-3CDS	ENST00000498605	ENST00000271889		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-intron	ENST00000498605	ENST00000368601		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-intron	ENST00000498605	ENST00000368603		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-intron	ENST00000498605	ENST00000368600		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
3UTR-3UTR	ENST00000498605	ENST00000468845		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000442995	ENST00000405694		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000442995	ENST00000368607		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000442995	ENST00000271889		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000442995	ENST00000368601		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000442995	ENST00000368603		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000442995	ENST00000368600		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-3UTR	ENST00000442995	ENST00000468845		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000458412	ENST00000405694		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000458412	ENST00000368607		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
In-frame	ENST00000458412	ENST00000271889		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000458412	ENST00000368601		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000458412	ENST00000368603		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000458412	ENST00000368600		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-3UTR	ENST00000458412	ENST00000468845		ChiTaRS3.1			BF476334	HYPK	chr15	44092808	-	CREB3L4	chr1	153946178	+
5CDS-intron	ENST00000379440	ENST00000252699		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000379440	ENST00000424234		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000379440	ENST00000390009		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000379440	ENST00000497637		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000430350	ENST00000252699		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000430350	ENST00000424234		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000430350	ENST00000390009		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
5CDS-intron	ENST00000430350	ENST00000497637		ChiTaRS3.1			BI039284	PRNP	chr20	4680282	+	ACTN4	chr19	39217744	-
intron-intron	ENST00000291574	ENST00000291574		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000291574	ENST00000380221		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000291574	ENST00000483973		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000380221	ENST00000291574		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000380221	ENST00000380221		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000380221	ENST00000483973		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000483973	ENST00000291574		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000483973	ENST00000380221		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-intron	ENST00000483973	ENST00000483973		ChiTaRS3.1			W52034	TRAPPC10	chr21	45496345	+	TRAPPC10	chr21	45496371	-
intron-3CDS	ENST00000358595	ENST00000358595		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000358595	ENST00000354396		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000358595	ENST00000515192		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000358595	ENST00000505755		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-intron	ENST00000358595	ENST00000468970		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000354396	ENST00000358595		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000354396	ENST00000354396		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000354396	ENST00000515192		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000354396	ENST00000505755		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-intron	ENST00000354396	ENST00000468970		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000515192	ENST00000358595		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000515192	ENST00000354396		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000515192	ENST00000515192		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000515192	ENST00000505755		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-intron	ENST00000515192	ENST00000468970		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000505755	ENST00000358595		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000505755	ENST00000354396		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000505755	ENST00000515192		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000505755	ENST00000505755		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-intron	ENST00000505755	ENST00000468970		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000468970	ENST00000358595		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000468970	ENST00000354396		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000468970	ENST00000515192		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-3CDS	ENST00000468970	ENST00000505755		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
intron-intron	ENST00000468970	ENST00000468970		ChiTaRS3.1			CB218834	ARNT	chr1	150783125	-	ARNT	chr1	150786662	-
Frame-shit	ENST00000491148	ENST00000491148		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
In-frame	ENST00000491148	ENST00000282957		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
5CDS-3UTR	ENST00000491148	ENST00000498639		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
In-frame	ENST00000282957	ENST00000491148		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
Frame-shit	ENST00000282957	ENST00000282957		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
5CDS-3UTR	ENST00000282957	ENST00000498639		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
3UTR-3CDS	ENST00000498639	ENST00000491148		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
3UTR-3CDS	ENST00000498639	ENST00000282957		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
3UTR-3UTR	ENST00000498639	ENST00000498639		ChiTaRS3.1			BM263604	CPB1	chr3	148577649	-	CPB1	chr3	148577696	+
5CDS-5UTR	ENST00000313269	ENST00000372014		ChiTaRS3.1			BE389544	GRINA	chr8	145065914	-	MRPL14	chr6	44095111	-
5CDS-5UTR	ENST00000395068	ENST00000372014		ChiTaRS3.1			BE389544	GRINA	chr8	145065914	-	MRPL14	chr6	44095111	-
intron-3CDS	ENST00000256015	ENST00000256015		ChiTaRS3.1			CN478804	BTG1	chr12	92537779	+	BTG1	chr12	92537964	-
intron-3CDS	ENST00000367800	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000367800	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367800	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000457866	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000457866	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000457866	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000417892	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000417892	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000417892	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000327035	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000327035	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000327035	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000488690	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000488690	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000488690	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000367798	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000367798	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000367798	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000528103	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000528103	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000528103	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000534469	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000534469	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000534469	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000531527	ENST00000367800		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3CDS	ENST00000531527	ENST00000457866		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000417892		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000327035		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000488690		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000367798		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000528103		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000534469		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-intron	ENST00000531527	ENST00000531527		ChiTaRS3.1			BE768864	AHI1	chr6	135786845	-	AHI1	chr6	135787429	-
intron-3UTR	ENST00000410075	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000410075	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000410075	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000410075	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000410075	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000377802	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000377802	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000377802	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000377802	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000377802	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000355812	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000355812	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000355812	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000355812	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000355812	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409544	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409544	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409544	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409544	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000409544	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000264447	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000264447	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000264447	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000264447	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000264447	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409407	ENST00000229239		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409407	ENST00000396856		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409407	ENST00000396861		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3UTR	ENST00000409407	ENST00000396859		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-intron	ENST00000409407	ENST00000396858		ChiTaRS3.1			BC044944	ZNF638	chr2	71603450	+	GAPDH	chr12	6647482	+
intron-3CDS	ENST00000559089	ENST00000559089		ChiTaRS3.1			BC065824	UBAP1L	chr15	65385496	+	UBAP1L	chr15	65391937	-
intron-3CDS	ENST00000559089	ENST00000502113		ChiTaRS3.1			BC065824	UBAP1L	chr15	65385496	+	UBAP1L	chr15	65391937	-
intron-3CDS	ENST00000502113	ENST00000559089		ChiTaRS3.1			BC065824	UBAP1L	chr15	65385496	+	UBAP1L	chr15	65391937	-
intron-3CDS	ENST00000502113	ENST00000502113		ChiTaRS3.1			BC065824	UBAP1L	chr15	65385496	+	UBAP1L	chr15	65391937	-
Frame-shit	ENST00000600714	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000600714	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000601257	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000601257	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000301096	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000301096	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000544146	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000544146	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000536937	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000536937	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000597597	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000597597	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000541777	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000541777	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000545872	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
5UTR-3CDS	ENST00000545872	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000594682	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000594682	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000391789	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000391789	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000596930	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000596930	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000597161	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000597161	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000598536	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
Frame-shit	ENST00000598536	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000600457	ENST00000252482		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000600457	ENST00000413988		ChiTaRS3.1			BE735144	ZNF83	chr19	53138319	-	EXOC3L2	chr19	45728174	-
intron-3CDS	ENST00000450536	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000450536	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000450536	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000450536	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000450536	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3CDS	ENST00000367663	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000367663	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000367663	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000367663	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000367663	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3CDS	ENST00000409812	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000409812	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000409812	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000409812	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000409812	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3CDS	ENST00000258062	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000258062	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000258062	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000258062	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000258062	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3CDS	ENST00000415951	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000415951	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000415951	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000415951	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000415951	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3CDS	ENST00000531675	ENST00000448299		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000531675	ENST00000358785		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000531675	ENST00000343381		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000531675	ENST00000366501		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-intron	ENST00000531675	ENST00000366500		ChiTaRS3.1			BE933804	REPS1	chr6	139225672	-	ZNF669	chr1	247264055	+
intron-3UTR	ENST00000439590	ENST00000347370		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000439590	ENST00000349431		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000339385		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000348298		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000400929		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000360466		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000400930		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000439590	ENST00000491779		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000311111	ENST00000347370		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000311111	ENST00000349431		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000339385		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000348298		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000400929		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000360466		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000400930		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000311111	ENST00000491779		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000584577	ENST00000347370		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000584577	ENST00000349431		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000339385		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000348298		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000400929		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000360466		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000400930		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000584577	ENST00000491779		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000534490	ENST00000347370		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000534490	ENST00000349431		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000339385		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000348298		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000400929		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000360466		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000400930		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000534490	ENST00000491779		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000533498	ENST00000347370		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000533498	ENST00000349431		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000339385		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000348298		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000400929		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000360466		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000400930		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-intron	ENST00000533498	ENST00000491779		ChiTaRS3.1			DB371044	RPL38	chr17	72205942	-	UBE2J2	chr1	1189857	+
intron-3UTR	ENST00000295666	ENST00000321063		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-3UTR	ENST00000295666	ENST00000359827		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000295666	ENST00000423507		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000295666	ENST00000378539		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-3UTR	ENST00000537922	ENST00000321063		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-3UTR	ENST00000537922	ENST00000359827		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000537922	ENST00000423507		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000537922	ENST00000378539		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-3UTR	ENST00000512512	ENST00000321063		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-3UTR	ENST00000512512	ENST00000359827		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000512512	ENST00000423507		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000512512	ENST00000378539		ChiTaRS3.1			T05904	IGFBP7	chr4	57907100	+	PLXNA4	chr7	131810602	+
intron-intron	ENST00000263734	ENST00000263734		ChiTaRS3.1			BE159964	EPAS1	chr2	46594500	-	EPAS1	chr2	46594578	+
intron-intron	ENST00000263734	ENST00000467888		ChiTaRS3.1			BE159964	EPAS1	chr2	46594500	-	EPAS1	chr2	46594578	+
intron-intron	ENST00000467888	ENST00000263734		ChiTaRS3.1			BE159964	EPAS1	chr2	46594500	-	EPAS1	chr2	46594578	+
intron-intron	ENST00000467888	ENST00000467888		ChiTaRS3.1			BE159964	EPAS1	chr2	46594500	-	EPAS1	chr2	46594578	+
intron-intron	ENST00000255882	ENST00000288828		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000255882	ENST00000401525		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000255882	ENST00000404704		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000255882	ENST00000485854		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000255882	ENST00000382384		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000255882	ENST00000484262		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000288828		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000401525		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000404704		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000485854		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000382384		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000572273	ENST00000484262		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000288828		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000401525		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000404704		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000485854		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000382384		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000414196	ENST00000484262		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000288828		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000401525		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000404704		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000485854		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000382384		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-intron	ENST00000466162	ENST00000484262		ChiTaRS3.1			BI059304	PI4KA	chr22	21172797	-	WIPI2	chr7	5266634	-
intron-3UTR	ENST00000370328	ENST00000370328		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370328	ENST00000370325		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370328	ENST00000393914		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370328	ENST00000483564		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370328		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000370325	ENST00000370325		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000370325	ENST00000393914		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000370325	ENST00000483564		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370328		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000393914	ENST00000370325		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000393914	ENST00000393914		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000393914	ENST00000483564		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370328		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3UTR	ENST00000483564	ENST00000370325		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-intron	ENST00000483564	ENST00000393914		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-5UTR	ENST00000483564	ENST00000483564		ChiTaRS3.1			BI060484	GABRE	chrX	151122670	+	GABRE	chrX	151122871	-
intron-3CDS	ENST00000264080	ENST00000264080		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000264080	ENST00000598626		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000264080	ENST00000430424		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-3CDS	ENST00000598626	ENST00000264080		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000598626	ENST00000598626		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000598626	ENST00000430424		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-3CDS	ENST00000430424	ENST00000264080		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000430424	ENST00000598626		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000430424	ENST00000430424		ChiTaRS3.1			CD368414	GPR108	chr19	6731087	+	GPR108	chr19	6737583	-
intron-intron	ENST00000432054	ENST00000432054		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000432054	ENST00000393238		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000432054	ENST00000426664		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000432054	ENST00000329333		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000432054	ENST00000515024		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000393238	ENST00000432054		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000393238	ENST00000393238		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000393238	ENST00000426664		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000393238	ENST00000329333		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000393238	ENST00000515024		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000426664	ENST00000432054		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000426664	ENST00000393238		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000426664	ENST00000426664		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000426664	ENST00000329333		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000426664	ENST00000515024		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000329333	ENST00000432054		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000329333	ENST00000393238		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000329333	ENST00000426664		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000329333	ENST00000329333		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000329333	ENST00000515024		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000515024	ENST00000432054		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000515024	ENST00000393238		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000515024	ENST00000426664		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000515024	ENST00000329333		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000515024	ENST00000515024		ChiTaRS3.1			CA945214	TMCC1	chr3	129566206	+	TMCC1	chr3	129566447	-
intron-intron	ENST00000381086	ENST00000371579		ChiTaRS3.1			DA021374	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000275521	ENST00000371579		ChiTaRS3.1			DA021374	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000381083	ENST00000371579		ChiTaRS3.1			DA021374	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000465642	ENST00000371579		ChiTaRS3.1			DA021374	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582484	BCL11B	chr14	99655477	-	BCL11B	chr14	99655740	+
intron-intron	ENST00000261844	ENST00000300213		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000261844	ENST00000356633		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000562351	ENST00000300213		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000562351	ENST00000356633		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000546305	ENST00000300213		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000546305	ENST00000356633		ChiTaRS3.1			DA365894	FAM214A	chr15	52949207	-	CCNDBP1	chr15	43478132	+
intron-intron	ENST00000583610	ENST00000583610		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000583610	ENST00000394294		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000583610	ENST00000264658		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000583610	ENST00000577399		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000394294	ENST00000583610		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000394294	ENST00000394294		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000394294	ENST00000264658		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000394294	ENST00000577399		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000264658	ENST00000583610		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000264658	ENST00000394294		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000264658	ENST00000264658		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000264658	ENST00000577399		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000577399	ENST00000583610		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000577399	ENST00000394294		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000577399	ENST00000264658		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-intron	ENST00000577399	ENST00000577399		ChiTaRS3.1			AW850234	FBXL20	chr17	37546423	+	FBXL20	chr17	37545736	+
intron-3UTR	ENST00000337478	ENST00000458244		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000337478	ENST00000293774		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000337478	ENST00000551956		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000278071	ENST00000458244		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000278071	ENST00000293774		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000278071	ENST00000551956		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000358187	ENST00000458244		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000358187	ENST00000293774		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000358187	ENST00000551956		ChiTaRS3.1			AW872714	ITPRIP	chr10	106081556	+	KRT4	chr12	53200576	-
intron-3CDS	ENST00000263346	ENST00000263346		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000263346	ENST00000563406		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000263346	ENST00000263347		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-3CDS	ENST00000563406	ENST00000263346		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000563406	ENST00000563406		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000563406	ENST00000263347		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-3CDS	ENST00000263347	ENST00000263346		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000263347	ENST00000563406		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
intron-intron	ENST00000263347	ENST00000263347		ChiTaRS3.1			BX507104	TCF25	chr16	89973213	-	TCF25	chr16	89971351	+
3UTR-3UTR	ENST00000299518	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000299518	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000299518	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000299518	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000299518	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000299518	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558554	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558554	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558554	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558554	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558554	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558554	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000559205	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000559205	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000559205	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000559205	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000559205	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000559205	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000441490	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000441490	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000441490	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000441490	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000441490	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000441490	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558535	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558535	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558535	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558535	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-3UTR	ENST00000558535	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
3UTR-intron	ENST00000558535	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000561366	ENST00000299518		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000561366	ENST00000558554		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000561366	ENST00000559205		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000561366	ENST00000441490		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000561366	ENST00000558535		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-intron	ENST00000561366	ENST00000561366		ChiTaRS3.1			BE887604	IDH3A	chr15	78461654	-	IDH3A	chr15	78461692	+
intron-3UTR	ENST00000223054	ENST00000354662		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000441439		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000447609		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000320122		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000261169		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000540848		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000535535		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000223054	ENST00000537304		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000223054	ENST00000541295		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000223054	ENST00000534946		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000223054	ENST00000540445		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000223054	ENST00000541846		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000223054	ENST00000537568		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000354662		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000441439		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000447609		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000320122		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000261169		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000540848		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000535535		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000379527	ENST00000537304		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000379527	ENST00000541295		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000379527	ENST00000534946		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000379527	ENST00000540445		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000379527	ENST00000541846		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000379527	ENST00000537568		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000354662		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000441439		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000447609		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000320122		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000261169		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000540848		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000535535		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000393950	ENST00000537304		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000393950	ENST00000541295		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000393950	ENST00000534946		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000393950	ENST00000540445		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000393950	ENST00000541846		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000393950	ENST00000537568		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000354662		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000441439		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000447609		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000320122		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000261169		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000540848		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000535535		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-3UTR	ENST00000424091	ENST00000537304		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000424091	ENST00000541295		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000424091	ENST00000534946		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000424091	ENST00000540445		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000424091	ENST00000541846		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000424091	ENST00000537568		ChiTaRS3.1			T05444	MOSPD3	chr7	100213017	+	LMO3	chr12	16703694	-
intron-intron	ENST00000396373	ENST00000504801		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000396373	ENST00000507898		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000396373	ENST00000393815		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000396373	ENST00000296526		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000396373	ENST00000264426		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000396373	ENST00000449365		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000504801		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000507898		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000393815		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000296526		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000264426		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-intron	ENST00000544715	ENST00000449365		ChiTaRS3.1			BF748464	ETV6	chr12	11993250	-	GRIA2	chr4	158195362	+
intron-5UTR	ENST00000415807	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000415807	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000415807	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
3UTR-5UTR	ENST00000336824	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
3UTR-5UTR	ENST00000336824	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
3UTR-intron	ENST00000336824	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000416957	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000416957	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000416957	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000392699	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000392699	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000392699	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000421757	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000421757	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000421757	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000423424	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000423424	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000423424	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000476794	ENST00000234160		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-5UTR	ENST00000476794	ENST00000493692		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000476794	ENST00000452526		ChiTaRS3.1			DA377894	FNDC3B	chr3	172118075	+	GORASP2	chr2	171785762	+
intron-intron	ENST00000222553	ENST00000222553		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000222553	ENST00000354289		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000222553	ENST00000484527		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000354289	ENST00000222553		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000354289	ENST00000354289		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000354289	ENST00000484527		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000484527	ENST00000222553		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000484527	ENST00000354289		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
intron-intron	ENST00000484527	ENST00000484527		ChiTaRS3.1			BE940024	NAMPT	chr7	105907632	+	NAMPT	chr7	105907382	-
3UTR-3UTR	ENST00000357430	ENST00000357430		ChiTaRS3.1			BM684664	ACSL3	chr2	223807733	-	ACSL3	chr2	223808529	-
3UTR-intron	ENST00000357430	ENST00000392066		ChiTaRS3.1			BM684664	ACSL3	chr2	223807733	-	ACSL3	chr2	223808529	-
intron-3UTR	ENST00000392066	ENST00000357430		ChiTaRS3.1			BM684664	ACSL3	chr2	223807733	-	ACSL3	chr2	223808529	-
intron-intron	ENST00000392066	ENST00000392066		ChiTaRS3.1			BM684664	ACSL3	chr2	223807733	-	ACSL3	chr2	223808529	-
intron-intron	ENST00000390548	ENST00000390548		ChiTaRS3.1			AW947284	IGHG1	chr14	106208540	-	IGHG1	chr14	106110246	+
5UTR-3CDS	ENST00000535300	ENST00000370859		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
5UTR-3CDS	ENST00000535300	ENST00000370855		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
5UTR-3CDS	ENST00000535300	ENST00000535611		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
5UTR-intron	ENST00000535300	ENST00000469525		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
3UTR-3CDS	ENST00000496055	ENST00000370859		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
3UTR-3CDS	ENST00000496055	ENST00000370855		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
3UTR-3CDS	ENST00000496055	ENST00000535611		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
3UTR-intron	ENST00000496055	ENST00000469525		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000319942	ENST00000370859		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000319942	ENST00000370855		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000319942	ENST00000535611		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
5CDS-intron	ENST00000319942	ENST00000469525		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000370826	ENST00000370859		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000370826	ENST00000370855		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000370826	ENST00000535611		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
5CDS-intron	ENST00000370826	ENST00000469525		ChiTaRS3.1			DA794004	RABGGTB	chr1	76253289	+	SLC44A5	chr1	75685577	-
Frame-shit	ENST00000237623	ENST00000237623		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
Frame-shit	ENST00000237623	ENST00000395080		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
In-frame	ENST00000237623	ENST00000360804		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
5CDS-3UTR	ENST00000237623	ENST00000509659		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
Frame-shit	ENST00000395080	ENST00000237623		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
Frame-shit	ENST00000395080	ENST00000395080		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
In-frame	ENST00000395080	ENST00000360804		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
5CDS-3UTR	ENST00000395080	ENST00000509659		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
Frame-shit	ENST00000360804	ENST00000237623		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
Frame-shit	ENST00000360804	ENST00000395080		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
In-frame	ENST00000360804	ENST00000360804		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
5CDS-3UTR	ENST00000360804	ENST00000509659		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
3UTR-3CDS	ENST00000509659	ENST00000237623		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
3UTR-3CDS	ENST00000509659	ENST00000395080		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
3UTR-3CDS	ENST00000509659	ENST00000360804		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
3UTR-3UTR	ENST00000509659	ENST00000509659		ChiTaRS3.1			BF081314	SPP1	chr4	88902869	-	SPP1	chr4	88903744	+
intron-intron	ENST00000370951	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370951	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000405432	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370950	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000454435	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000436161	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000484162	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370951		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000405432		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370950		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000436161		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000484162		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
intron-intron	ENST00000370949	ENST00000370949		ChiTaRS3.1			AW979064	SRSF11	chr1	70691226	+	SRSF11	chr1	70691283	-
5CDS-intron	ENST00000344922	ENST00000466548		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000418532		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000488699		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000267219		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000351546		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000465831		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000314070		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344922	ENST00000358679		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000466548		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000418532		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000488699		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000267219		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000351546		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000465831		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000314070		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000344441	ENST00000358679		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000466548		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000418532		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000488699		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000267219		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000351546		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000465831		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000314070		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000344507	ENST00000358679		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000466548		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000418532		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000488699		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000267219		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000351546		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000465831		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000314070		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
5CDS-intron	ENST00000340535	ENST00000358679		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000466548		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000418532		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000488699		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000267219		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000351546		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000465831		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000314070		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
intron-intron	ENST00000470521	ENST00000358679		ChiTaRS3.1			AW899124	MIA3	chr1	222826620	+	SLAIN1	chr13	78315658	+
In-frame	ENST00000264012	ENST00000360566		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
In-frame	ENST00000264012	ENST00000304567		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
In-frame	ENST00000429102	ENST00000360566		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
In-frame	ENST00000429102	ENST00000304567		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
5UTR-3CDS	ENST00000581171	ENST00000360566		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
5UTR-3CDS	ENST00000581171	ENST00000304567		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
intron-3CDS	ENST00000569117	ENST00000360566		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
intron-3CDS	ENST00000569117	ENST00000304567		ChiTaRS3.1			DB124334	CDH3	chr16	68679282	+	RRM2	chr2	10263171	+
intron-3CDS	ENST00000255882	ENST00000370481		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000255882	ENST00000475853		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000572273	ENST00000370481		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000572273	ENST00000475853		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000414196	ENST00000370481		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000414196	ENST00000475853		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-3CDS	ENST00000466162	ENST00000370481		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
intron-intron	ENST00000466162	ENST00000475853		ChiTaRS3.1			BE006734	PI4KA	chr22	21161747	+	GBP3	chr1	89477630	-
3UTR-3UTR	ENST00000547405	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547405	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547405	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000547405	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000452455	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000452455	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000360610	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000360610	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000441232	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000441232	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000392934	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000392934	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000547509	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000547509	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361685	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000361685	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000550501	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000550501	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000549145	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000549145	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000553190	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000553190	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000536007	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000536007	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000541119	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000541119	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000545503	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000545503	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000361466	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000361466	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-3UTR	ENST00000551300	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
3UTR-intron	ENST00000551300	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000301891		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000377585		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3UTR	ENST00000550270	ENST00000377581		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-intron	ENST00000550270	ENST00000490834		ChiTaRS3.1			R93384	MYBPC1	chr12	102079504	-	SLC22A11	chr11	64338907	-
intron-3CDS	ENST00000337147	ENST00000337147		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000337147	ENST00000367075		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000337147	ENST00000392177		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-intron	ENST00000337147	ENST00000476189		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000367075	ENST00000337147		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000367075	ENST00000367075		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000367075	ENST00000392177		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-intron	ENST00000367075	ENST00000476189		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000392177	ENST00000337147		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000392177	ENST00000367075		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000392177	ENST00000392177		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-intron	ENST00000392177	ENST00000476189		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000476189	ENST00000337147		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000476189	ENST00000367075		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-3CDS	ENST00000476189	ENST00000392177		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-intron	ENST00000476189	ENST00000476189		ChiTaRS3.1			BF084744	EZR	chr6	159192305	+	EZR	chr6	159190912	+
intron-intron	ENST00000405409	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000405409	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000405409	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000405409	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000405409	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000405409	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000414461	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000449924	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000262829	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000397303	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000359369	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000416721	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000395808		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000589119		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000312090		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000269814		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000325464		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
intron-intron	ENST00000438146	ENST00000606828		ChiTaRS3.1			BF766064	RBFOX2	chr22	36137340	+	MED16	chr19	876580	-
5CDS-intron	ENST00000223029	ENST00000223029		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000223029	ENST00000400479		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000223029	ENST00000395236		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000400479	ENST00000223029		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000400479	ENST00000400479		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000400479	ENST00000395236		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000395236	ENST00000223029		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000395236	ENST00000400479		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
5CDS-intron	ENST00000395236	ENST00000395236		ChiTaRS3.1			W25934	AIMP2	chr7	6063141	+	AIMP2	chr7	6062541	-
intron-intron	ENST00000288561	ENST00000288561		ChiTaRS3.1			CB048874	UBN2	chr7	138921748	-	UBN2	chr7	138969320	-
intron-intron	ENST00000288561	ENST00000473989		ChiTaRS3.1			CB048874	UBN2	chr7	138921748	-	UBN2	chr7	138969320	-
intron-intron	ENST00000473989	ENST00000288561		ChiTaRS3.1			CB048874	UBN2	chr7	138921748	-	UBN2	chr7	138969320	-
intron-intron	ENST00000473989	ENST00000473989		ChiTaRS3.1			CB048874	UBN2	chr7	138921748	-	UBN2	chr7	138969320	-
intron-intron	ENST00000535741	ENST00000535741		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000510413		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000503716		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000357115		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000535741	ENST00000507224		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000535741		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000510413		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000503716		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000357115		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000510413	ENST00000507224		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000535741		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000510413		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000503716		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000357115		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000503716	ENST00000507224		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000535741		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000510413		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000503716		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000357115		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000357115	ENST00000507224		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000535741		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000510413		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000503716		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000357115		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000507224	ENST00000507224		ChiTaRS3.1			AW991984	LRBA	chr4	151816471	+	LRBA	chr4	151762227	-
intron-intron	ENST00000397981	ENST00000397981		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397981	ENST00000545011		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397981	ENST00000397983		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397981	ENST00000397979		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000545011	ENST00000397981		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000545011	ENST00000545011		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000545011	ENST00000397983		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000545011	ENST00000397979		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397983	ENST00000397981		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397983	ENST00000545011		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397983	ENST00000397983		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397983	ENST00000397979		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397979	ENST00000397981		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397979	ENST00000545011		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397979	ENST00000397983		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
intron-intron	ENST00000397979	ENST00000397979		ChiTaRS3.1			DA497564	MAP2K7	chr19	7974313	+	MAP2K7	chr19	7969905	+
5CDS-5UTR	ENST00000254950	ENST00000555699		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
5CDS-5UTR	ENST00000254950	ENST00000334869		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
5CDS-5UTR	ENST00000254950	ENST00000557434		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
5CDS-5UTR	ENST00000254950	ENST00000393218		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
5CDS-5UTR	ENST00000254950	ENST00000557034		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-5UTR	ENST00000564399	ENST00000555699		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-5UTR	ENST00000564399	ENST00000334869		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-5UTR	ENST00000564399	ENST00000557434		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-5UTR	ENST00000564399	ENST00000393218		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-5UTR	ENST00000564399	ENST00000557034		ChiTaRS3.1			BC008004	VPS4A	chr16	69356476	-	LGMN	chr14	93214930	-
intron-3CDS	ENST00000327827	ENST00000532636		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-3CDS	ENST00000327827	ENST00000533540		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000453788		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000534624		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000227378		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000534319		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000526110		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
intron-intron	ENST00000327827	ENST00000526862		ChiTaRS3.1			CV322984	C16orf72	chr16	9207939	-	HSPA8	chr11	122929390	+
3UTR-3UTR	ENST00000211998	ENST00000211998		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-3UTR	ENST00000211998	ENST00000372755		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-intron	ENST00000211998	ENST00000478896		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-intron	ENST00000211998	ENST00000417648		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-3UTR	ENST00000372755	ENST00000211998		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-3UTR	ENST00000372755	ENST00000372755		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-intron	ENST00000372755	ENST00000478896		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
3UTR-intron	ENST00000372755	ENST00000417648		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-3UTR	ENST00000478896	ENST00000211998		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-3UTR	ENST00000478896	ENST00000372755		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-intron	ENST00000478896	ENST00000478896		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-intron	ENST00000478896	ENST00000417648		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-3UTR	ENST00000417648	ENST00000211998		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-3UTR	ENST00000417648	ENST00000372755		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-intron	ENST00000417648	ENST00000478896		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
intron-intron	ENST00000417648	ENST00000417648		ChiTaRS3.1			CA310524	VCL	chr10	75879672	-	VCL	chr10	75879237	+
Frame-shit	ENST00000443617	ENST00000300030		ChiTaRS3.1			BC017384	HERC1	chr15	64066893	-	FAM96A	chr15	64367737	-
5CDS-intron	ENST00000443617	ENST00000558779		ChiTaRS3.1			BC017384	HERC1	chr15	64066893	-	FAM96A	chr15	64367737	-
5CDS-intron	ENST00000443617	ENST00000380290		ChiTaRS3.1			BC017384	HERC1	chr15	64066893	-	FAM96A	chr15	64367737	-
5CDS-intron	ENST00000443617	ENST00000557835		ChiTaRS3.1			BC017384	HERC1	chr15	64066893	-	FAM96A	chr15	64367737	-
5CDS-intron	ENST00000443617	ENST00000559950		ChiTaRS3.1			BC017384	HERC1	chr15	64066893	-	FAM96A	chr15	64367737	-
intron-3CDS	ENST00000396863	ENST00000396863		ChiTaRS3.1			BE264624	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000396863	ENST00000217026		ChiTaRS3.1			BE264624	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000396863		ChiTaRS3.1			BE264624	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-3CDS	ENST00000217026	ENST00000217026		ChiTaRS3.1			BE264624	MYBL2	chr20	42331135	-	MYBL2	chr20	42331220	+
intron-5UTR	ENST00000274242	ENST00000567594		ChiTaRS3.1			BF726594	RPL37	chr5	40834588	-	SSSCA1-AS1	chr11	65337622	+
intron-5UTR	ENST00000509877	ENST00000567594		ChiTaRS3.1			BF726594	RPL37	chr5	40834588	-	SSSCA1-AS1	chr11	65337622	+
intron-5UTR	ENST00000504562	ENST00000567594		ChiTaRS3.1			BF726594	RPL37	chr5	40834588	-	SSSCA1-AS1	chr11	65337622	+
intron-5UTR	ENST00000508493	ENST00000567594		ChiTaRS3.1			BF726594	RPL37	chr5	40834588	-	SSSCA1-AS1	chr11	65337622	+
3UTR-3UTR	ENST00000398174	ENST00000336615		ChiTaRS3.1			BU960554	HM13	chr20	30157173	+	PNPLA2	chr11	825028	+
3UTR-3UTR	ENST00000340852	ENST00000336615		ChiTaRS3.1			BU960554	HM13	chr20	30157173	+	PNPLA2	chr11	825028	+
3UTR-3UTR	ENST00000335574	ENST00000336615		ChiTaRS3.1			BU960554	HM13	chr20	30157173	+	PNPLA2	chr11	825028	+
3UTR-3UTR	ENST00000376127	ENST00000336615		ChiTaRS3.1			BU960554	HM13	chr20	30157173	+	PNPLA2	chr11	825028	+
3UTR-3UTR	ENST00000492709	ENST00000336615		ChiTaRS3.1			BU960554	HM13	chr20	30157173	+	PNPLA2	chr11	825028	+
intron-3UTR	ENST00000468306	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000468306	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000468306	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000370401	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000370401	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000370401	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000432680	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000432680	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000432680	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000262858	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000262858	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000262858	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000426613	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000426613	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000426613	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000455522	ENST00000406755		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000455522	ENST00000404774		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-3UTR	ENST00000455522	ENST00000401401		ChiTaRS3.1			BE703964	MAMLD1	chrX	149635086	+	MMD2	chr7	4945740	-
intron-intron	ENST00000545844	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000545844	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000545844	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000545844	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000545844	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000567887	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000567887	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000567887	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000567887	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000567887	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000372915	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000372915	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000372915	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000372915	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000372915	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000361689	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000361689	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000361689	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000361689	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000361689	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000539005	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000539005	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000539005	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000539005	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000539005	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000317713	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000317713	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000317713	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000317713	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000317713	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000564288	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000564288	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000564288	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000564288	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000564288	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000289893	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000289893	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000289893	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000289893	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000289893	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000536367	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000536367	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000536367	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000536367	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000536367	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000484793	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000484793	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000484793	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000484793	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000484793	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000602421	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000602421	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000602421	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000602421	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000602421	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000476350	ENST00000355848		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000476350	ENST00000407324		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000476350	ENST00000410067		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-5UTR	ENST00000476350	ENST00000409302		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000476350	ENST00000470189		ChiTaRS3.1			BC017884	MACF1	chr1	39688637	+	C1D	chr2	68290122	-
intron-intron	ENST00000262367	ENST00000406337		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000262367	ENST00000265713		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000262367	ENST00000396930		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000262367	ENST00000485568		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000382070	ENST00000406337		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000382070	ENST00000265713		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000382070	ENST00000396930		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-intron	ENST00000382070	ENST00000485568		ChiTaRS3.1			AY442918	CREBBP	chr16	3907404	+	KAT6A	chr8	41793857	+
intron-3CDS	ENST00000375095	ENST00000370557		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000375095	ENST00000327569		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000375095	ENST00000361648		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000375095	ENST00000460773		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000375095	ENST00000370543		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000375095	ENST00000359686		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000314475	ENST00000370557		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000314475	ENST00000327569		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000314475	ENST00000361648		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000314475	ENST00000460773		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000314475	ENST00000370543		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000314475	ENST00000359686		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000531346	ENST00000370557		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000531346	ENST00000327569		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000531346	ENST00000361648		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000531346	ENST00000460773		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000531346	ENST00000370543		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000531346	ENST00000359686		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000529187	ENST00000370557		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000529187	ENST00000327569		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-3CDS	ENST00000529187	ENST00000361648		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000529187	ENST00000460773		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000529187	ENST00000370543		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-5UTR	ENST00000529187	ENST00000359686		ChiTaRS3.1			BE179504	TMEM136	chr11	120197275	-	ATP11C	chrX	138825741	-
intron-intron	ENST00000226299	ENST00000226299		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000226299	ENST00000606142		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000226299	ENST00000503467		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000606142	ENST00000226299		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000606142	ENST00000606142		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000606142	ENST00000503467		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000503467	ENST00000226299		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000503467	ENST00000606142		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000503467	ENST00000503467		ChiTaRS3.1			BF377094	LAP3	chr4	17596089	-	LAP3	chr4	17595795	+
intron-intron	ENST00000361999	ENST00000361999		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000361999	ENST00000355123		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000361999	ENST00000406921		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000361999	ENST00000407704		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000355123	ENST00000361999		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000355123	ENST00000355123		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000355123	ENST00000406921		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000355123	ENST00000407704		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000406921	ENST00000361999		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000406921	ENST00000355123		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000406921	ENST00000406921		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000406921	ENST00000407704		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000407704	ENST00000361999		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000407704	ENST00000355123		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000407704	ENST00000406921		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-intron	ENST00000407704	ENST00000407704		ChiTaRS3.1			BF104974	ITSN2	chr2	24515556	-	ITSN2	chr2	24518219	-
intron-3CDS	ENST00000373025	ENST00000373025		ChiTaRS3.1			AW869314	PGC	chr6	41707606	+	PGC	chr6	41710077	-
intron-3CDS	ENST00000373025	ENST00000425343		ChiTaRS3.1			AW869314	PGC	chr6	41707606	+	PGC	chr6	41710077	-
intron-3CDS	ENST00000425343	ENST00000373025		ChiTaRS3.1			AW869314	PGC	chr6	41707606	+	PGC	chr6	41710077	-
intron-3CDS	ENST00000425343	ENST00000425343		ChiTaRS3.1			AW869314	PGC	chr6	41707606	+	PGC	chr6	41710077	-
Frame-shit	ENST00000409871	ENST00000409871		ChiTaRS3.1			BX649154	ZC3H6	chr2	113089859	+	ZC3H6	chr2	113057425	+
Frame-shit	ENST00000409871	ENST00000343936		ChiTaRS3.1			BX649154	ZC3H6	chr2	113089859	+	ZC3H6	chr2	113057425	+
Frame-shit	ENST00000343936	ENST00000409871		ChiTaRS3.1			BX649154	ZC3H6	chr2	113089859	+	ZC3H6	chr2	113057425	+
Frame-shit	ENST00000343936	ENST00000343936		ChiTaRS3.1			BX649154	ZC3H6	chr2	113089859	+	ZC3H6	chr2	113057425	+
intron-intron	ENST00000461783	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000461783	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000461783	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000461783	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000461783	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000449545	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000449545	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000449545	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000449545	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000449545	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000367174	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000367174	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000367174	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000367174	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000367174	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456144	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456144	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456144	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456144	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456144	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000318981	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000318981	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000318981	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000318981	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000318981	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000360366	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000360366	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000360366	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000360366	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000360366	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000529824	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000529824	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000529824	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000529824	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000529824	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456877	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456877	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456877	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456877	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000456877	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000528391	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000528391	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000528391	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000528391	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000528391	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000275246	ENST00000343702		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000275246	ENST00000344911		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000275246	ENST00000538383		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000275246	ENST00000553059		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-intron	ENST00000275246	ENST00000552603		ChiTaRS3.1			T05134	TIAM2	chr6	155456944	+	NTN4	chr12	96111311	+
intron-3CDS	ENST00000253401	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000253401	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000253401	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000253401	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000253401	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000253401	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000253401	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000253401	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374878	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374878	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374878	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374878	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374878	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374878	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374878	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374878	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374870	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374870	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374870	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374870	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374870	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374870	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374870	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374870	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000437457	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000437457	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000437457	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000437457	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000437457	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000437457	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000437457	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000437457	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000495564	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000495564	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000495564	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000495564	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000495564	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000495564	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000495564	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000495564	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374872	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374872	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374872	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000374872	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374872	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374872	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374872	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000374872	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000433323	ENST00000400274		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000433323	ENST00000427143		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000433323	ENST00000318711		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000433323	ENST00000417564		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000433323	ENST00000457905		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000433323	ENST00000466639		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000433323	ENST00000435722		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-intron	ENST00000433323	ENST00000479654		ChiTaRS3.1			BE696194	ARHGEF9	chrX	62860231	-	DIP2A	chr21	47970554	+
intron-3CDS	ENST00000319888	ENST00000401695		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-3CDS	ENST00000319888	ENST00000407193		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-3CDS	ENST00000319888	ENST00000312037		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-3CDS	ENST00000574538	ENST00000401695		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-3CDS	ENST00000574538	ENST00000407193		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-3CDS	ENST00000574538	ENST00000312037		ChiTaRS3.1			CN271804	METTL4	chr18	2542393	-	RPS14	chr5	149823882	-
intron-intron	ENST00000368679	ENST00000367661		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000368679	ENST00000367662		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000368679	ENST00000486075		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000368676	ENST00000367661		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000368676	ENST00000367662		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000368676	ENST00000486075		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000467145	ENST00000367661		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000467145	ENST00000367662		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
intron-intron	ENST00000467145	ENST00000486075		ChiTaRS3.1			CV374024	ADAM12	chr10	127892345	-	PAPPA2	chr1	176607952	-
3UTR-3CDS	ENST00000361682	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000361682	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000361682	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000361682	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000361682	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000403184	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000403184	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000403184	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000403710	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000403710	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000403710	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000407537	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000407537	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000407537	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000406520	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000406520	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000406520	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-3CDS	ENST00000449653	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000449653	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
3UTR-intron	ENST00000449653	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000316156		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000373150		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-3CDS	ENST00000493893	ENST00000373151		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000493893	ENST00000474796		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000493893	ENST00000373148		ChiTaRS3.1			BI053724	COMT	chr22	19956314	-	MAP7D1	chr1	36644863	+
intron-intron	ENST00000374825	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374825	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000496118	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000496118	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000580234	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000580234	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000374831	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000374831	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000395289	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395289	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000443797	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000443797	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000395287	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000395287	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000449085	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449085	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000438194	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000438194	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000466744	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466744	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000383108	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000383108	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000547895	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547895	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000549843	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549843	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000442863	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442863	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000552513	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552513	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000442219	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000442219	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000498329	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000498329	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000488549	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000488549	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000425201	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000425201	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000399529	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399529	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000399528	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399528	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000550142	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000550142	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000548837	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000548837	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000399527	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000399527	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-intron	ENST00000549236	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
5CDS-3UTR	ENST00000549236	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000482105	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000482105	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000414731	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000414731	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000449118	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000449118	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000550598	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000550598	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000479973	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000479973	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000546777	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000546777	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000450320	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000450320	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000547286	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000547286	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000552587	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000552587	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000549126	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000549126	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000553146	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000553146	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000448067	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000448067	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000436979	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000436979	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-intron	ENST00000466208	ENST00000548589		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000552699		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000267115		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000549385		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000423828		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000395006		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3UTR	ENST00000466208	ENST00000547798		ChiTaRS3.1			BE005984	BRD2	chr6	4179800	-	TMBIM6	chr12	50156712	+
intron-3CDS	ENST00000395169	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000395169	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000359221	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000359221	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000361569	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000361569	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000395166	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000395166	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000449047	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000449047	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000395161	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000395161	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000513839	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000513839	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000395157	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000395157	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-3CDS	ENST00000395160	ENST00000372577		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000395160	ENST00000550219		ChiTaRS3.1			T07564	MAPK10	chr4	87205530	+	NUP188	chr9	131763874	-
intron-intron	ENST00000326764	ENST00000326764		ChiTaRS3.1			BF091044	LENG8	chr19	54970024	-	LENG8	chr19	54971280	-
intron-intron	ENST00000326764	ENST00000376514		ChiTaRS3.1			BF091044	LENG8	chr19	54970024	-	LENG8	chr19	54971280	-
intron-intron	ENST00000376514	ENST00000326764		ChiTaRS3.1			BF091044	LENG8	chr19	54970024	-	LENG8	chr19	54971280	-
intron-intron	ENST00000376514	ENST00000376514		ChiTaRS3.1			BF091044	LENG8	chr19	54970024	-	LENG8	chr19	54971280	-
5CDS-intron	ENST00000377809	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377809	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000402010	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000413835	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000377810	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000315032	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000508192	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000361128	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000350490	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000502399	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000509502	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000513765	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000408948	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000377809		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000402010		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000413835		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000377810		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000315032		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000508192		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000361128		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000350490		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000502399		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000509502		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000513765		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000408948		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
5CDS-intron	ENST00000425897	ENST00000425897		ChiTaRS3.1			BE090074	MARK2	chr11	63676450	-	MARK2	chr11	63636327	+
intron-intron	ENST00000316763	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000316763	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000377011	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000599538	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000443401	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601341	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594948	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000601912	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000594092	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000593919	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000316763		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000377011		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000599538		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000443401		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000601341		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000594948		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000601912		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000594092		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000593919		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000424804	ENST00000424804		ChiTaRS3.1			BE161074	VRK3	chr19	50488287	-	VRK3	chr19	50490137	-
intron-intron	ENST00000534358	ENST00000395246		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000534358	ENST00000504701		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000534358	ENST00000503291		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000534358	ENST00000360515		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000534358	ENST00000505065		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000389506	ENST00000395246		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000389506	ENST00000504701		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000389506	ENST00000503291		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000389506	ENST00000360515		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000389506	ENST00000505065		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000354520	ENST00000395246		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000354520	ENST00000504701		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000354520	ENST00000503291		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000354520	ENST00000360515		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000354520	ENST00000505065		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000420751	ENST00000395246		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000420751	ENST00000504701		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000420751	ENST00000503291		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000420751	ENST00000360515		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000420751	ENST00000505065		ChiTaRS3.1			AY839737	KMT2A	chr11	118358098	+	CDC42SE2	chr5	130611266	+
intron-intron	ENST00000262093	ENST00000371759		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000262093	ENST00000467127		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000262093	ENST00000474016		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000382873	ENST00000371759		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000382873	ENST00000467127		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000382873	ENST00000474016		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000585699	ENST00000371759		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000585699	ENST00000467127		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-intron	ENST00000585699	ENST00000474016		ChiTaRS3.1			CN278494	FECH	chr18	55238667	-	C1orf185	chr1	51604493	+
intron-3CDS	ENST00000408982	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000408982	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000262477	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000537505	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000546142	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000341923	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000346169		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000414031		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000392537		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000382330		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000350481		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000352767		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000427845		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000342981		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000319274		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000424196		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000411531		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000441154		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000434061		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
intron-3CDS	ENST00000570487	ENST00000435046		ChiTaRS3.1			BE466214	RABEP1	chr17	5281981	+	EIF4G1	chr3	184040202	-
3UTR-3UTR	ENST00000369983	ENST00000256682		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000447318		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541959		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
3UTR-intron	ENST00000369983	ENST00000541967		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-3UTR	ENST00000476019	ENST00000256682		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000447318		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541959		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000476019	ENST00000541967		ChiTaRS3.1			H38464	GBF1	chr10	104142570	-	ARF3	chr12	49332083	+
intron-intron	ENST00000307078	ENST00000283882		ChiTaRS3.1			BE502564	AXIN2	chr17	63525235	+	CFDP1	chr16	75338927	+
intron-intron	ENST00000307078	ENST00000564286		ChiTaRS3.1			BE502564	AXIN2	chr17	63525235	+	CFDP1	chr16	75338927	+
intron-intron	ENST00000375702	ENST00000283882		ChiTaRS3.1			BE502564	AXIN2	chr17	63525235	+	CFDP1	chr16	75338927	+
intron-intron	ENST00000375702	ENST00000564286		ChiTaRS3.1			BE502564	AXIN2	chr17	63525235	+	CFDP1	chr16	75338927	+
intron-intron	ENST00000481781	ENST00000481781		ChiTaRS3.1			T57444	INS-IGF2	chr11	2150458	+	INS-IGF2	chr11	2150419	-
intron-intron	ENST00000481781	ENST00000397270		ChiTaRS3.1			T57444	INS-IGF2	chr11	2150458	+	INS-IGF2	chr11	2150419	-
intron-intron	ENST00000397270	ENST00000481781		ChiTaRS3.1			T57444	INS-IGF2	chr11	2150458	+	INS-IGF2	chr11	2150419	-
intron-intron	ENST00000397270	ENST00000397270		ChiTaRS3.1			T57444	INS-IGF2	chr11	2150458	+	INS-IGF2	chr11	2150419	-
intron-intron	ENST00000335350	ENST00000335350		ChiTaRS3.1			AW994304	UNC5B	chr10	73028150	-	UNC5B	chr10	73028097	+
intron-intron	ENST00000335350	ENST00000373192		ChiTaRS3.1			AW994304	UNC5B	chr10	73028150	-	UNC5B	chr10	73028097	+
intron-intron	ENST00000373192	ENST00000335350		ChiTaRS3.1			AW994304	UNC5B	chr10	73028150	-	UNC5B	chr10	73028097	+
intron-intron	ENST00000373192	ENST00000373192		ChiTaRS3.1			AW994304	UNC5B	chr10	73028150	-	UNC5B	chr10	73028097	+
intron-3CDS	ENST00000337018	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000337018	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000337018	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000337018	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000337018	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000337018	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000452918	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000452918	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000452918	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000452918	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000452918	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000452918	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000601879	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000601879	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000601879	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000601879	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000601879	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000601879	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000600377	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000600377	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000600377	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000600377	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000600377	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000600377	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000456085	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000456085	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000456085	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000456085	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000456085	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000456085	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000598202	ENST00000337018		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000598202	ENST00000452918		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000598202	ENST00000601879		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000598202	ENST00000600377		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-3CDS	ENST00000598202	ENST00000456085		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
intron-intron	ENST00000598202	ENST00000598202		ChiTaRS3.1			BI051154	SUGP2	chr19	19135695	+	SUGP2	chr19	19120802	-
5CDS-intron	ENST00000326266	ENST00000359282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000603815		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000437231		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000447282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000549863		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000359462		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000546463		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000552296		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000552819		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000455667		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000439930		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000548933		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000326266	ENST00000541275		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000359282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000603815		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000437231		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000447282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000549863		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000359462		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000546463		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000552296		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000552819		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000455667		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000439930		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000548933		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000574549	ENST00000541275		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000359282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000603815		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000437231		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000447282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000549863		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000359462		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000546463		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000552296		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000552819		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000455667		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000439930		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000548933		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000575576	ENST00000541275		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000359282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000603815		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000437231		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000447282		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000549863		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000359462		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000546463		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000552296		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000552819		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000455667		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000439930		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000548933		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
5CDS-intron	ENST00000253952	ENST00000541275		ChiTaRS3.1			BF757284	THOC6	chr16	3075942	-	PCBP2	chr12	53867597	+
Frame-shit	ENST00000313654	ENST00000313654		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000399516		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000269217		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000313654	ENST00000587184		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000313654	ENST00000588770		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000313654		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000399516		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000269217		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000399516	ENST00000587184		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000399516	ENST00000588770		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000313654		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000399516		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000269217		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000269217	ENST00000587184		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000269217	ENST00000588770		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000313654		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000399516		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000269217		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
Frame-shit	ENST00000587184	ENST00000587184		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-3UTR	ENST00000587184	ENST00000588770		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000313654		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000399516		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000269217		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3CDS	ENST00000588770	ENST00000587184		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
3UTR-3UTR	ENST00000588770	ENST00000588770		ChiTaRS3.1			AW853574	LAMA3	chr18	21500988	+	LAMA3	chr18	21496576	-
5CDS-intron	ENST00000315769	ENST00000315769		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
5CDS-intron	ENST00000315769	ENST00000297737		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
5CDS-intron	ENST00000315769	ENST00000523823		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
5CDS-intron	ENST00000297737	ENST00000315769		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
5CDS-intron	ENST00000297737	ENST00000297737		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
5CDS-intron	ENST00000297737	ENST00000523823		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
intron-intron	ENST00000523823	ENST00000315769		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
intron-intron	ENST00000523823	ENST00000297737		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
intron-intron	ENST00000523823	ENST00000523823		ChiTaRS3.1			BY798534	ZMAT4	chr8	40438683	-	ZMAT4	chr8	40644301	-
3UTR-intron	ENST00000318627	ENST00000442822		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000447241		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000375015		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000533191		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000527965		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000375007		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000425722		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000449847		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000427082		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000438312		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000424621		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000413045		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000399749		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000383262		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000383130		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000448986		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000547550		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000548975		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000548927		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000457429		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
3UTR-intron	ENST00000318627	ENST00000451857		ChiTaRS3.1			BE089934	FIBIN	chr11	27016775	+	C6orf10	chr6	3641779	+
In-frame	ENST00000265304	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000265304	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000265304	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000265304	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000265304	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
In-frame	ENST00000498107	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000498107	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000498107	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000498107	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000498107	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
3UTR-3CDS	ENST00000469123	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
3UTR-intron	ENST00000469123	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
3UTR-intron	ENST00000469123	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
3UTR-intron	ENST00000469123	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
3UTR-intron	ENST00000469123	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
In-frame	ENST00000465582	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000465582	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000465582	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000465582	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000465582	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
In-frame	ENST00000484178	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000484178	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000484178	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000484178	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000484178	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
In-frame	ENST00000481508	ENST00000259119		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000481508	ENST00000426052		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000481508	ENST00000490989		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000481508	ENST00000413427		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
5CDS-intron	ENST00000481508	ENST00000458537		ChiTaRS3.1			DB038344	SSBP1	chr7	141445318	+	SKIL	chr3	170075509	+
intron-intron	ENST00000418658	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000418658	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000418658	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397461	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397461	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397461	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000427331	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000427331	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000427331	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000358480	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000358480	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000358480	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397459	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397459	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000397459	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000448906	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000448906	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000448906	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000475817	ENST00000334062		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000475817	ENST00000389544		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000475817	ENST00000542651		ChiTaRS3.1			AW827134	CNTN4	chr3	2163438	-	RASA3	chr13	114758670	-
intron-intron	ENST00000393469	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000393469	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000393469	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000393469	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000423114	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000423114	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000423114	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000423114	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000469902	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000469902	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000469902	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000469902	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000314584	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000314584	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000314584	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000314584	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000430155	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000430155	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000430155	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000430155	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000465475	ENST00000337147		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000465475	ENST00000367075		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000465475	ENST00000392177		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-intron	ENST00000465475	ENST00000476189		ChiTaRS3.1			CA314324	SLC12A8	chr3	124802315	+	EZR	chr6	159197319	+
intron-5UTR	ENST00000395290	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000395290	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000358597	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000358597	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000395292	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000395292	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000310513	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000310513	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000361904	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000361904	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000539455	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000539455	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000531165	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000531165	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000532048	ENST00000602402		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
intron-5UTR	ENST00000532048	ENST00000376795		ChiTaRS3.1			U28424	CELF1	chr11	47488801	+	DNAJC3	chr13	96329483	+
In-frame	ENST00000444836	ENST00000444836		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
In-frame	ENST00000444836	ENST00000235329		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
5CDS-intron	ENST00000444836	ENST00000497302		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
In-frame	ENST00000235329	ENST00000444836		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
In-frame	ENST00000235329	ENST00000235329		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
5CDS-intron	ENST00000235329	ENST00000497302		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
intron-3CDS	ENST00000497302	ENST00000444836		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
intron-3CDS	ENST00000497302	ENST00000235329		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
intron-intron	ENST00000497302	ENST00000497302		ChiTaRS3.1			BF689364	MFN2	chr1	12066664	+	MFN2	chr1	12062133	+
intron-3CDS	ENST00000342992	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342992	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000460472	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000460472	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000589042	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000589042	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000342175	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000342175	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000359218	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000359218	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000591111	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000591111	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000360870	ENST00000342992		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000460472		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000589042		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000342175		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000359218		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000591111		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-intron	ENST00000360870	ENST00000360870		ChiTaRS3.1			F00774	TTN	chr2	179569672	+	TTN	chr2	179569323	-
intron-3CDS	ENST00000464611	ENST00000359655		ChiTaRS3.1			BI063294	ACTB	chr7	5567775	+	SUPV3L1	chr10	70967660	-
intron-intron	ENST00000464611	ENST00000483572		ChiTaRS3.1			BI063294	ACTB	chr7	5567775	+	SUPV3L1	chr10	70967660	-
intron-3CDS	ENST00000331789	ENST00000359655		ChiTaRS3.1			BI063294	ACTB	chr7	5567775	+	SUPV3L1	chr10	70967660	-
intron-intron	ENST00000331789	ENST00000483572		ChiTaRS3.1			BI063294	ACTB	chr7	5567775	+	SUPV3L1	chr10	70967660	-
intron-intron	ENST00000302328	ENST00000268616		ChiTaRS3.1			BF433084	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000450244	ENST00000268616		ChiTaRS3.1			BF433084	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000456224	ENST00000268616		ChiTaRS3.1			BF433084	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000444237	ENST00000268616		ChiTaRS3.1			BF433084	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
3UTR-intron	ENST00000248706	ENST00000437232		ChiTaRS3.1			CF593924	RASL11B	chr4	53732941	+	VIM-AS1	chr10	17271277	+
3UTR-intron	ENST00000248706	ENST00000605833		ChiTaRS3.1			CF593924	RASL11B	chr4	53732941	+	VIM-AS1	chr10	17271277	+
3UTR-intron	ENST00000505041	ENST00000437232		ChiTaRS3.1			CF593924	RASL11B	chr4	53732941	+	VIM-AS1	chr10	17271277	+
3UTR-intron	ENST00000505041	ENST00000605833		ChiTaRS3.1			CF593924	RASL11B	chr4	53732941	+	VIM-AS1	chr10	17271277	+
intron-3CDS	ENST00000291823	ENST00000382031		ChiTaRS3.1			M62294	HIPK4	chr19	40886656	+	MAP1A	chr15	43814808	-
intron-3CDS	ENST00000291823	ENST00000399453		ChiTaRS3.1			M62294	HIPK4	chr19	40886656	+	MAP1A	chr15	43814808	-
intron-3CDS	ENST00000291823	ENST00000300231		ChiTaRS3.1			M62294	HIPK4	chr19	40886656	+	MAP1A	chr15	43814808	-
intron-intron	ENST00000342694	ENST00000448150		ChiTaRS3.1			BF369934	NPR2	chr9	35794913	-	RASAL2	chr1	178371899	+
intron-intron	ENST00000342694	ENST00000367649		ChiTaRS3.1			BF369934	NPR2	chr9	35794913	-	RASAL2	chr1	178371899	+
intron-intron	ENST00000342694	ENST00000465723		ChiTaRS3.1			BF369934	NPR2	chr9	35794913	-	RASAL2	chr1	178371899	+
intron-intron	ENST00000342694	ENST00000462775		ChiTaRS3.1			BF369934	NPR2	chr9	35794913	-	RASAL2	chr1	178371899	+
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB147374	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3UTR	ENST00000458244	ENST00000458244		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000293774		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000458244	ENST00000551956		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000458244		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000293774		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000293774	ENST00000551956		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000458244		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000293774		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-3UTR	ENST00000551956	ENST00000551956		ChiTaRS3.1			BF063454	KRT4	chr12	53200681	+	KRT4	chr12	53200576	-
intron-intron	ENST00000339861	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000339861	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420987	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000455551	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000343780	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000450295	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000438547	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000356444	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000422704	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000420101	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000339861		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000420987		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000455551		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000343780		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000450295		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000438547		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000356444		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000422704		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000420101		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000469653	ENST00000469653		ChiTaRS3.1			EB360774	SEMA4D	chr9	92046799	+	SEMA4D	chr9	92046267	+
intron-intron	ENST00000371522	ENST00000596112		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000371522	ENST00000594922		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000371522	ENST00000598667		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000358358	ENST00000596112		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000358358	ENST00000594922		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000358358	ENST00000598667		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000536120	ENST00000596112		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000536120	ENST00000594922		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000536120	ENST00000598667		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000541281	ENST00000596112		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000541281	ENST00000594922		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000541281	ENST00000598667		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000480312	ENST00000596112		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000480312	ENST00000594922		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000480312	ENST00000598667		ChiTaRS3.1			CV404864	ECHDC2	chr1	53380619	+	FMR1-AS1	chrX	147002462	-
intron-intron	ENST00000367858	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367858	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000524929	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000413996	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000237305	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000367857	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000528577	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000475719	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000367858		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000524929		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000413996		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000237305		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000367857		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000528577		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000475719		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000489458	ENST00000489458		ChiTaRS3.1			BF351614	SGK1	chr6	134559514	-	SGK1	chr6	134559320	+
intron-intron	ENST00000519937	ENST00000519937		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000519937	ENST00000342375		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000519937	ENST00000393822		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000519937	ENST00000409383		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000342375	ENST00000519937		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000342375	ENST00000342375		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000342375	ENST00000393822		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000342375	ENST00000409383		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000393822	ENST00000519937		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000393822	ENST00000342375		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000393822	ENST00000393822		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000393822	ENST00000409383		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000409383	ENST00000519937		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000409383	ENST00000342375		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000409383	ENST00000393822		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
intron-intron	ENST00000409383	ENST00000409383		ChiTaRS3.1			BE827604	SFTPB	chr2	85893760	-	SFTPB	chr2	85894801	+
5CDS-intron	ENST00000262990	ENST00000389560		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000262990	ENST00000443539		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000262990	ENST00000392352		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000262990	ENST00000361109		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000262990	ENST00000376625		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000262990	ENST00000475841		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000389560		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000443539		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000392352		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000361109		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000376625		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
5CDS-intron	ENST00000421169	ENST00000475841		ChiTaRS3.1			BF223164	ZNF330	chr4	142143648	-	EP400NL	chr12	132570255	-
intron-3UTR	ENST00000398160	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000398160	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000398169	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000398169	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000358932	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000358932	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000437553	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000437553	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000353689	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000353689	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000398163	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000398163	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-3UTR	ENST00000557114	ENST00000265080		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
intron-intron	ENST00000557114	ENST00000502677		ChiTaRS3.1			BP242964	CCNB1IP1	chr14	20779697	-	RASGRF2	chr5	80523995	+
5CDS-3UTR	ENST00000438306	ENST00000462284		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000438306	ENST00000356290		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000438306	ENST00000540827		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000438306	ENST00000258149		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000438306	ENST00000428863		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000393412		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000258148		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000544561		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000393410		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000393413		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000517852		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000545204		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000350057		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000360430		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000299252		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000348801		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000478070		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000438306	ENST00000544125		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000445716	ENST00000462284		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000445716	ENST00000356290		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000445716	ENST00000540827		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000445716	ENST00000258149		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000445716	ENST00000428863		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000393412		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000258148		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000544561		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000393410		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000393413		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000517852		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000545204		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000350057		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000360430		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000299252		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000348801		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000478070		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000445716	ENST00000544125		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000427372	ENST00000462284		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000427372	ENST00000356290		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000427372	ENST00000540827		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000427372	ENST00000258149		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-3UTR	ENST00000427372	ENST00000428863		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000393412		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000258148		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000544561		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000393410		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000393413		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000517852		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000545204		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000350057		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000360430		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000299252		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000348801		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000478070		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
5CDS-intron	ENST00000427372	ENST00000544125		ChiTaRS3.1			BC079834	FAM133B	chr7	92206969	-	MDM2	chr12	69236111	-
intron-3CDS	ENST00000398158	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398158	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398158	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398158	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398158	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398158	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000398158	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398165	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000398165	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000359624	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000359624	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000352178	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000352178	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000398168	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000398168	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000544202	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000544202	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000398158		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000398165		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000359624		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000352178		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000398168		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-3CDS	ENST00000470912	ENST00000544202		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000470912	ENST00000470912		ChiTaRS3.1			L25464	CBS	chr21	44474076	-	CBS	chr21	44474020	+
intron-intron	ENST00000357248	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000357248	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000349721	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382203	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382194	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000491574	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000324954	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000302401	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382186	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000357248		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000349721		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000382203		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000382194		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000491574		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000324954		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000302401		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000382186		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000382185	ENST00000382185		ChiTaRS3.1			CK820594	SMARCA2	chr9	2187766	+	SMARCA2	chr9	2183045	+
intron-intron	ENST00000257904	ENST00000497753		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000257904	ENST00000310256		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000257904	ENST00000366658		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000312990	ENST00000497753		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000312990	ENST00000310256		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000312990	ENST00000366658		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000549606	ENST00000497753		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000549606	ENST00000310256		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000549606	ENST00000366658		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000540325	ENST00000497753		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000540325	ENST00000310256		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000540325	ENST00000366658		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000551888	ENST00000497753		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000551888	ENST00000310256		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-intron	ENST00000551888	ENST00000366658		ChiTaRS3.1			CN296904	CDK4	chr12	58142187	-	ARV1	chr1	231133826	-
intron-3CDS	ENST00000394555	ENST00000394555		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000394555	ENST00000394554		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394555	ENST00000424836		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394555	ENST00000355426		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394555	ENST00000497698		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000394554	ENST00000394555		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000394554	ENST00000394554		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394554	ENST00000424836		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394554	ENST00000355426		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000394554	ENST00000497698		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000424836	ENST00000394555		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000424836	ENST00000394554		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000424836	ENST00000424836		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000424836	ENST00000355426		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000424836	ENST00000497698		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000355426	ENST00000394555		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000355426	ENST00000394554		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000355426	ENST00000424836		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000355426	ENST00000355426		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000355426	ENST00000497698		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000497698	ENST00000394555		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-3CDS	ENST00000497698	ENST00000394554		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000497698	ENST00000424836		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000497698	ENST00000355426		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000497698	ENST00000497698		ChiTaRS3.1			BF337044	EFEMP1	chr2	56104937	+	EFEMP1	chr2	56104900	-
intron-intron	ENST00000424970	ENST00000320717		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-3UTR	ENST00000424970	ENST00000338435		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000424970	ENST00000409626		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000424970	ENST00000409428		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000424970	ENST00000409215		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000424970	ENST00000471443		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000394833	ENST00000320717		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-3UTR	ENST00000394833	ENST00000338435		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000394833	ENST00000409626		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000394833	ENST00000409428		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000394833	ENST00000409215		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000394833	ENST00000471443		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000356736	ENST00000320717		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-3UTR	ENST00000356736	ENST00000338435		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000356736	ENST00000409626		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000356736	ENST00000409428		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000356736	ENST00000409215		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000356736	ENST00000471443		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000510255	ENST00000320717		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-3UTR	ENST00000510255	ENST00000338435		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000510255	ENST00000409626		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000510255	ENST00000409428		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000510255	ENST00000409215		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000510255	ENST00000471443		ChiTaRS3.1			AW999094	SLC39A8	chr4	103183326	-	GLS	chr2	191798952	-
intron-intron	ENST00000544305	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000544305	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000544305	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-3UTR	ENST00000544305	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000544305	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000544305	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374630	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374630	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374630	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-3UTR	ENST00000374630	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374630	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374630	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000400191	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000400191	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000400191	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-3UTR	ENST00000400191	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000400191	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000400191	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374632	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374632	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374632	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-3UTR	ENST00000374632	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374632	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
5CDS-intron	ENST00000374632	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-intron	ENST00000374627	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-intron	ENST00000374627	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-intron	ENST00000374627	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-3UTR	ENST00000374627	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-intron	ENST00000374627	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-intron	ENST00000374627	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000465676	ENST00000544305		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000465676	ENST00000374630		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000465676	ENST00000400191		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-3UTR	ENST00000465676	ENST00000374632		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000465676	ENST00000374627		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
intron-intron	ENST00000465676	ENST00000465676		ChiTaRS3.1			CB241094	EPHB2	chr1	23239993	-	EPHB2	chr1	23240261	-
3UTR-3UTR	ENST00000534336	ENST00000237937		ChiTaRS3.1			BE814884	MALAT1	chr11	65270209	+	ZFAND5	chr9	74970741	+
3UTR-5UTR	ENST00000534336	ENST00000488164		ChiTaRS3.1			BE814884	MALAT1	chr11	65270209	+	ZFAND5	chr9	74970741	+
3UTR-3UTR	ENST00000534336	ENST00000376962		ChiTaRS3.1			BE814884	MALAT1	chr11	65270209	+	ZFAND5	chr9	74970741	+
3UTR-3UTR	ENST00000534336	ENST00000376960		ChiTaRS3.1			BE814884	MALAT1	chr11	65270209	+	ZFAND5	chr9	74970741	+
3UTR-intron	ENST00000534336	ENST00000343431		ChiTaRS3.1			BE814884	MALAT1	chr11	65270209	+	ZFAND5	chr9	74970741	+
intron-intron	ENST00000263598	ENST00000263598		ChiTaRS3.1			CK430284	LCN1	chr9	138418082	+	LCN1	chr9	138417142	+
intron-intron	ENST00000263598	ENST00000371781		ChiTaRS3.1			CK430284	LCN1	chr9	138418082	+	LCN1	chr9	138417142	+
intron-intron	ENST00000371781	ENST00000263598		ChiTaRS3.1			CK430284	LCN1	chr9	138418082	+	LCN1	chr9	138417142	+
intron-intron	ENST00000371781	ENST00000371781		ChiTaRS3.1			CK430284	LCN1	chr9	138418082	+	LCN1	chr9	138417142	+
intron-3CDS	ENST00000567684	ENST00000356205		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368623		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000368621		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3CDS	ENST00000567684	ENST00000310483		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000537590		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-5UTR	ENST00000567684	ENST00000461071		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000356205		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
Frame-shit	ENST00000326152	ENST00000368623		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000368621		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
In-frame	ENST00000326152	ENST00000310483		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000537590		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
5CDS-5UTR	ENST00000326152	ENST00000461071		ChiTaRS3.1			CB960424	HSD11B2	chr16	67465408	+	SLC39A1	chr1	153935041	-
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835144	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000285039	ENST00000311772		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000285039	ENST00000236412		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000285039	ENST00000373931		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000285039	ENST00000486634		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000324581	ENST00000311772		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000324581	ENST00000236412		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000324581	ENST00000373931		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000324581	ENST00000486634		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000592688	ENST00000311772		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000592688	ENST00000236412		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000592688	ENST00000373931		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000592688	ENST00000486634		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000587895	ENST00000311772		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000587895	ENST00000236412		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000587895	ENST00000373931		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000587895	ENST00000486634		ChiTaRS3.1			M78404	MYO5B	chr18	47587355	+	PPP1R8	chr1	28158085	+
intron-intron	ENST00000374279	ENST00000374279		ChiTaRS3.1			BE185694	UGCG	chr9	114672701	-	UGCG	chr9	114672833	+
intron-intron	ENST00000374279	ENST00000495085		ChiTaRS3.1			BE185694	UGCG	chr9	114672701	-	UGCG	chr9	114672833	+
intron-intron	ENST00000495085	ENST00000374279		ChiTaRS3.1			BE185694	UGCG	chr9	114672701	-	UGCG	chr9	114672833	+
intron-intron	ENST00000495085	ENST00000495085		ChiTaRS3.1			BE185694	UGCG	chr9	114672701	-	UGCG	chr9	114672833	+
intron-intron	ENST00000389484	ENST00000328405		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000389484	ENST00000475063		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000389484	ENST00000537696		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000486364	ENST00000328405		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000486364	ENST00000475063		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000486364	ENST00000537696		ChiTaRS3.1			BF364794	LRP1B	chr2	142611154	+	KCNH8	chr3	19362665	-
intron-intron	ENST00000585509	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000585509	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589297	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000591455	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000446868	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000361101	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000589296	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000585509		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000589297		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000591455		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000446868		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000361101		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000589296		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000586175	ENST00000586175		ChiTaRS3.1			BI012134	CYTH1	chr17	76671504	+	CYTH1	chr17	76675713	-
intron-intron	ENST00000407775	ENST00000407775		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000407775	ENST00000520492		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000407775	ENST00000517361		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000407775	ENST00000522296		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000407775	ENST00000378472		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000407775		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000520492		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000520492	ENST00000517361		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000520492	ENST00000522296		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000520492	ENST00000378472		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000407775		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000520492		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000517361	ENST00000517361		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000517361	ENST00000522296		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000517361	ENST00000378472		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000407775		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000520492		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000522296	ENST00000517361		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000522296	ENST00000522296		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000522296	ENST00000378472		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000407775		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000520492		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-intron	ENST00000378472	ENST00000517361		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000378472	ENST00000522296		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-5UTR	ENST00000378472	ENST00000378472		ChiTaRS3.1			BI467364	ZFPM2	chr8	106807589	-	ZFPM2	chr8	106808077	-
intron-3UTR	ENST00000481195	ENST00000481195		ChiTaRS3.1			T39914	PPP2CA	chr5	133533007	+	PPP2CA	chr5	133532989	-
intron-intron	ENST00000481195	ENST00000231504		ChiTaRS3.1			T39914	PPP2CA	chr5	133533007	+	PPP2CA	chr5	133532989	-
intron-3UTR	ENST00000231504	ENST00000481195		ChiTaRS3.1			T39914	PPP2CA	chr5	133533007	+	PPP2CA	chr5	133532989	-
intron-intron	ENST00000231504	ENST00000231504		ChiTaRS3.1			T39914	PPP2CA	chr5	133533007	+	PPP2CA	chr5	133532989	-
intron-3UTR	ENST00000267970	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000267970	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000267970	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000267970	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000267970	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000267970	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000267970	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000346495	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000346495	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000424443	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000424443	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000561277	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000561277	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000559494	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000559494	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558745	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000558745	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000267970		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000346495		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000424443		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000561277		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000559494		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000558394	ENST00000558745		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-intron	ENST00000558394	ENST00000558394		ChiTaRS3.1			CB242294	TSPAN3	chr15	77338538	+	TSPAN3	chr15	77338720	-
intron-3UTR	ENST00000399410	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399410	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399410	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399410	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399410	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000399410	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000349029	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000349029	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000349029	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000349029	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000349029	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000349029	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000351154	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000351154	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000351154	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000351154	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000351154	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000351154	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399408	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399408	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399408	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399408	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000399408	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000399408	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000345148	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000345148	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000345148	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000345148	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000345148	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000345148	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000346370	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000346370	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000346370	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000346370	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000346370	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000346370	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000576557	ENST00000311604		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000576557	ENST00000381775		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000576557	ENST00000405957		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000576557	ENST00000406638		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-3UTR	ENST00000576557	ENST00000485341		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-intron	ENST00000576557	ENST00000599825		ChiTaRS3.1			BI024764	ABCC1	chr16	16199167	-	LSP1	chr11	1913233	-
intron-5UTR	ENST00000519519	ENST00000262812		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000519519	ENST00000349893		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000519519	ENST00000600932		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-intron	ENST00000519519	ENST00000598969		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000519519	ENST00000351079		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000418210	ENST00000262812		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000418210	ENST00000349893		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000418210	ENST00000600932		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-intron	ENST00000418210	ENST00000598969		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000418210	ENST00000351079		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000458549	ENST00000262812		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000458549	ENST00000349893		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000458549	ENST00000600932		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-intron	ENST00000458549	ENST00000598969		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000458549	ENST00000351079		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000523902	ENST00000262812		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000523902	ENST00000349893		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000523902	ENST00000600932		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-intron	ENST00000523902	ENST00000598969		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-5UTR	ENST00000523902	ENST00000351079		ChiTaRS3.1			BE794044	TMEM64	chr8	91637066	+	COPE	chr19	19030167	-
intron-3CDS	ENST00000498195	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000498195	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000241071	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000360609	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000465843	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000468962	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000405409		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000414461		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000449924		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000262829		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000397303		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000359369		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000416721		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-3CDS	ENST00000427939	ENST00000438146		ChiTaRS3.1			BF753854	FBXO24	chr7	100193132	-	RBFOX2	chr22	36205969	-
intron-intron	ENST00000545334	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000545334	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000545334	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000545334	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000545334	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000537927	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000537927	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000537927	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000537927	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000537927	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000318304	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000318304	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000318304	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000318304	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000318304	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000535047	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000535047	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000535047	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000535047	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000535047	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000542629	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000542629	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000542629	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000542629	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000542629	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000228425	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000228425	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000228425	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000228425	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000228425	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000541633	ENST00000560302		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000541633	ENST00000394518		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000541633	ENST00000361243		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000541633	ENST00000560579		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-3UTR	ENST00000541633	ENST00000394510		ChiTaRS3.1			U03634	PPFIBP1	chr12	27794391	-	AKAP13	chr15	86260519	+
intron-intron	ENST00000384756	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384756	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000364799	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384693	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000383926	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000516331	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384706	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
5CDS-intron	ENST00000363981	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000384147	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000376828		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000428701		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000360323		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000376818		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000376815		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000400665		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000546545		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000444098		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000452715		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000445373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000420559		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000546634		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000423373		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000452577		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000457132		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000450984		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000547931		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000449127		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000412263		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000415687		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000400682		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000553052		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000383621		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000383622		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000383623		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000422371		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000550897		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000428952		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000426863		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000429890		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000434881		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000547241		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000423011		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000448306		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000434907		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000365607	ENST00000430253		ChiTaRS3.1			DA046504	SNHG1	chr11	62622485	-	HLA-G	chr6	1203670	+
intron-intron	ENST00000216797	ENST00000229043		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000216797	ENST00000454402		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000216797	ENST00000392542		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000216797	ENST00000543153		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557140	ENST00000229043		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557140	ENST00000454402		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557140	ENST00000392542		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557140	ENST00000543153		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557389	ENST00000229043		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557389	ENST00000454402		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557389	ENST00000392542		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557389	ENST00000543153		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557100	ENST00000229043		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557100	ENST00000454402		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557100	ENST00000392542		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-intron	ENST00000557100	ENST00000543153		ChiTaRS3.1			AW820294	NFKBIA	chr14	35872395	+	RFC5	chr12	118468528	-
intron-3UTR	ENST00000354981	ENST00000352732		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000354981	ENST00000565973		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000354981	ENST00000355100		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000354981	ENST00000562254		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000378003	ENST00000352732		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000378003	ENST00000565973		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000378003	ENST00000355100		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000378003	ENST00000562254		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000355755	ENST00000352732		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000355755	ENST00000565973		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000355755	ENST00000355100		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000355755	ENST00000562254		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000408042	ENST00000352732		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000408042	ENST00000565973		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-3UTR	ENST00000408042	ENST00000355100		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000408042	ENST00000562254		ChiTaRS3.1			DA875914	KIF16B	chr20	16458382	-	ABHD2	chr15	89743704	+
intron-intron	ENST00000393500	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393500	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393494	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000403559	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000408937	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000350908	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393498	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393489	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000393491	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000459666	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000378237	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000360232	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000390668	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393500		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393494		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000403559		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000408937		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000350908		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393498		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393489		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000393491		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000459666		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000378237		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000360232		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000390668		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000462331	ENST00000462331		ChiTaRS3.1			AW818584	FOXP2	chr7	113734883	-	FOXP2	chr7	113735323	+
intron-intron	ENST00000370557	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370557	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370557	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370557	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000327569	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000327569	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000327569	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000327569	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000361648	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000361648	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000361648	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000361648	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000460773	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000460773	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000460773	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000460773	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370543	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370543	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370543	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000370543	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000359686	ENST00000375095		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000359686	ENST00000314475		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000359686	ENST00000531346		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-intron	ENST00000359686	ENST00000529187		ChiTaRS3.1			BF352674	ATP11C	chrX	138825741	+	TMEM136	chr11	120197275	+
intron-3UTR	ENST00000332853	ENST00000332853		ChiTaRS3.1			BF091574	VSTM4	chr10	50226667	-	VSTM4	chr10	50227011	-
intron-intron	ENST00000332853	ENST00000298454		ChiTaRS3.1			BF091574	VSTM4	chr10	50226667	-	VSTM4	chr10	50227011	-
intron-3UTR	ENST00000298454	ENST00000332853		ChiTaRS3.1			BF091574	VSTM4	chr10	50226667	-	VSTM4	chr10	50227011	-
intron-intron	ENST00000298454	ENST00000298454		ChiTaRS3.1			BF091574	VSTM4	chr10	50226667	-	VSTM4	chr10	50227011	-
intron-intron	ENST00000353332	ENST00000604458		ChiTaRS3.1			BM689654	MTMR14	chr3	9709380	+	HSPE1-MOB4	chr2	198416929	+
intron-intron	ENST00000420925	ENST00000604458		ChiTaRS3.1			BM689654	MTMR14	chr3	9709380	+	HSPE1-MOB4	chr2	198416929	+
intron-intron	ENST00000296003	ENST00000604458		ChiTaRS3.1			BM689654	MTMR14	chr3	9709380	+	HSPE1-MOB4	chr2	198416929	+
intron-intron	ENST00000351233	ENST00000604458		ChiTaRS3.1			BM689654	MTMR14	chr3	9709380	+	HSPE1-MOB4	chr2	198416929	+
intron-3CDS	ENST00000390658	ENST00000390658		ChiTaRS3.1			BC071854	EID2	chr19	40030638	+	EID2	chr19	40030575	-
intron-intron	ENST00000521861	ENST00000466830		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000521861	ENST00000423894		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000521861	ENST00000469102		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000276682	ENST00000466830		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000276682	ENST00000423894		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000276682	ENST00000469102		ChiTaRS3.1			DA942074	EIF3H	chr8	117658793	-	CMC1	chr3	28287324	+
intron-intron	ENST00000358105	ENST00000418404		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-intron	ENST00000358105	ENST00000252172		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-intron	ENST00000508675	ENST00000418404		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-intron	ENST00000508675	ENST00000252172		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-intron	ENST00000512931	ENST00000418404		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-intron	ENST00000512931	ENST00000252172		ChiTaRS3.1			CA335494	C4orf22	chr4	81580773	+	MYH13	chr17	10541244	-
intron-3UTR	ENST00000337225	ENST00000382247		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
intron-3UTR	ENST00000337225	ENST00000536863		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
intron-intron	ENST00000337225	ENST00000507768		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
intron-3UTR	ENST00000512158	ENST00000382247		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
intron-3UTR	ENST00000512158	ENST00000536863		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
intron-intron	ENST00000512158	ENST00000507768		ChiTaRS3.1			CB217634	CXCL14	chr5	134914166	+	DCAF16	chr4	17803054	+
Frame-shit	ENST00000356554	ENST00000356554		ChiTaRS3.1			BE832754	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
5CDS-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			BE832754	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-3CDS	ENST00000482811	ENST00000356554		ChiTaRS3.1			BE832754	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			BE832754	MAN1A2	chr1	117963272	+	MAN1A2	chr1	117944806	+
intron-intron	ENST00000544071	ENST00000544071		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-3UTR	ENST00000544071	ENST00000371933		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-intron	ENST00000544071	ENST00000484461		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-intron	ENST00000371933	ENST00000544071		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-3UTR	ENST00000371933	ENST00000371933		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-intron	ENST00000371933	ENST00000484461		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-intron	ENST00000484461	ENST00000544071		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-3UTR	ENST00000484461	ENST00000371933		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
intron-intron	ENST00000484461	ENST00000484461		ChiTaRS3.1			CB242814	EFCAB14	chr1	47140961	+	EFCAB14	chr1	47141209	-
3UTR-3CDS	ENST00000263398	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000263398	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-3CDS	ENST00000526025	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000526025	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000449691	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000449691	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000360158	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000360158	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000415148	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000415148	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000437706	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000437706	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000433354	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433354	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000428726	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000428726	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000526669	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000526669	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000433892	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000433892	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
Frame-shit	ENST00000278386	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000278386	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-3CDS	ENST00000434472	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
3UTR-intron	ENST00000434472	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
In-frame	ENST00000352818	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
5CDS-intron	ENST00000352818	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-3CDS	ENST00000528922	ENST00000263398		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000526025		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000449691		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000360158		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000415148		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000437706		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000433354		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000428726		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000526669		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000433892		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000278386		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000434472		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000352818		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000528922	ENST00000528922		ChiTaRS3.1			BM280254	CD44	chr11	35250886	-	CD44	chr11	35250675	+
intron-intron	ENST00000372524	ENST00000297063		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000338533		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000317020		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000440378		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000436884		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000453212		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000480192		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000372524	ENST00000415803		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000297063		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000338533		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000317020		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000440378		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000436884		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000453212		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000480192		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
intron-intron	ENST00000535216	ENST00000415803		ChiTaRS3.1			BE856654	ZNF503	chr10	77158084	+	KIAA0895	chr7	36375373	-
3UTR-3UTR	ENST00000346916	ENST00000346916		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000346916	ENST00000545507		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000346916	ENST00000333511		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000346916	ENST00000353555		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-intron	ENST00000346916	ENST00000574970		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000545507	ENST00000346916		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000545507	ENST00000545507		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000545507	ENST00000333511		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000545507	ENST00000353555		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-intron	ENST00000545507	ENST00000574970		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000333511	ENST00000346916		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000333511	ENST00000545507		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000333511	ENST00000333511		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000333511	ENST00000353555		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-intron	ENST00000333511	ENST00000574970		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000353555	ENST00000346916		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000353555	ENST00000545507		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000353555	ENST00000333511		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-3UTR	ENST00000353555	ENST00000353555		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
3UTR-intron	ENST00000353555	ENST00000574970		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-3UTR	ENST00000574970	ENST00000346916		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-3UTR	ENST00000574970	ENST00000545507		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-3UTR	ENST00000574970	ENST00000333511		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-3UTR	ENST00000574970	ENST00000353555		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-intron	ENST00000574970	ENST00000574970		ChiTaRS3.1			CA422684	BSG	chr19	582940	-	BSG	chr19	582859	+
intron-intron	ENST00000433360	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433360	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433360	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433360	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433360	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433360	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000340694	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000424654	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000433881	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000289495	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000433360		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000340694		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000424654		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000433881		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000289495		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000456331	ENST00000456331		ChiTaRS3.1			BM721054	PPP1R9A	chr7	94633716	+	PPP1R9A	chr7	94632367	+
intron-intron	ENST00000404771	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404771	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372440	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000372443	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286628	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000286627	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000354353	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000404857	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000406533	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000484507	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000481070	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000442544		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000412726		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000581580		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000480683	ENST00000580146		ChiTaRS3.1			BE930864	KCNMA1	chr10	78787614	-	DCC	chr18	51031801	+
intron-intron	ENST00000429723	ENST00000429723		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000429723	ENST00000379715		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000429723	ENST00000507463		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000379715	ENST00000429723		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000379715	ENST00000379715		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000379715	ENST00000507463		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000507463	ENST00000429723		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000507463	ENST00000379715		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000507463	ENST00000507463		ChiTaRS3.1			BE062254	EEF1E1	chr6	8085960	-	EEF1E1	chr6	8085729	+
intron-intron	ENST00000266383	ENST00000256062		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000551659		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000552618		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000319685		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000539277		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000266383	ENST00000381224		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000256062		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000551659		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000552618		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000319685		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000539277		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-intron	ENST00000544638	ENST00000381224		ChiTaRS3.1			BE070244	B4GALNT3	chr12	584796	-	TMTC1	chr12	29805128	+
intron-3CDS	ENST00000467442	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000467442	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000467442	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000476809	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000476809	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000476809	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000485419	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000485419	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000485419	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000337808	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000337808	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000337808	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000527095	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000527095	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000527095	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000412423	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000412423	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000412423	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000460298	ENST00000367064		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3CDS	ENST00000460298	ENST00000367063		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000391921		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000367067		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000314754		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000391920		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000367062		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000367065		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-intron	ENST00000460298	ENST00000465534		ChiTaRS3.1			BF083314	IQCJ-SCHIP1	chr3	159610428	-	CD55	chr1	207497952	-
intron-3UTR	ENST00000552828	ENST00000225964		ChiTaRS3.1			CN302144	CKAP4	chr12	106632937	+	COL1A1	chr17	48262795	-
intron-3UTR	ENST00000378026	ENST00000225964		ChiTaRS3.1			CN302144	CKAP4	chr12	106632937	+	COL1A1	chr17	48262795	-
3UTR-intron	ENST00000296582	ENST00000353258		ChiTaRS3.1			BF002424	TMEM184C	chr4	148556222	-	GDE1	chr16	19519009	+
intron-intron	ENST00000508208	ENST00000353258		ChiTaRS3.1			BF002424	TMEM184C	chr4	148556222	-	GDE1	chr16	19519009	+
intron-intron	ENST00000443950	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000443950	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000443950	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000443950	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000544000	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000544000	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000544000	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000544000	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000357065	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000357065	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000357065	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000357065	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000356053	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000356053	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000356053	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000356053	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000337970	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000337970	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000337970	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000337970	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000498176	ENST00000400546		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000498176	ENST00000284894		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000498176	ENST00000535285		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
intron-intron	ENST00000498176	ENST00000486367		ChiTaRS3.1			BF378144	HNRNPF	chr10	43881663	-	NCAM2	chr21	22589407	+
3UTR-3UTR	ENST00000456758	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000457378	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000389574	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000452783	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000405266	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000401592	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000403868	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000425407	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000469755	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000413514	ENST00000252242		ChiTaRS3.1			CB243964	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3CDS	ENST00000478654	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000478654	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000478654	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000460911	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000460911	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000460911	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000350995	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000350995	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000350995	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000320356	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000320356	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000320356	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000541220	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000541220	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000541220	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000476773	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000476773	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000476773	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000483967	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000483967	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000483967	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000536783	ENST00000600324		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3CDS	ENST00000536783	ENST00000594605		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-intron	ENST00000536783	ENST00000597593		ChiTaRS3.1			CB115094	EZH2	chr7	148529818	+	STAP2	chr19	4332061	-
intron-3UTR	ENST00000445355	ENST00000445355		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000445355	ENST00000415217		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000445355	ENST00000485491		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000445355	ENST00000559180		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000415217	ENST00000445355		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000415217	ENST00000415217		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000415217	ENST00000485491		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000415217	ENST00000559180		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000485491	ENST00000445355		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000485491	ENST00000415217		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000485491	ENST00000485491		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000485491	ENST00000559180		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000559180	ENST00000445355		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-3UTR	ENST00000559180	ENST00000415217		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000559180	ENST00000485491		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
intron-intron	ENST00000559180	ENST00000559180		ChiTaRS3.1			CR994434	ADAM8	chr10	135076240	-	ADAM8	chr10	135076087	+
Frame-shit	ENST00000299767	ENST00000299767		ChiTaRS3.1			W27444	HSP90B1	chr12	104341183	-	HSP90B1	chr12	104331492	+
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY840548	KMT2A	chr11	118355788	+	MLLT3	chr9	20402456	-
intron-intron	ENST00000443824	ENST00000443824		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000443824	ENST00000359276		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000443824	ENST00000380241		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000443824	ENST00000483053		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000359276	ENST00000443824		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000359276	ENST00000359276		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000359276	ENST00000380241		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000359276	ENST00000483053		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000380241	ENST00000443824		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000380241	ENST00000359276		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000380241	ENST00000380241		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000380241	ENST00000483053		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000483053	ENST00000443824		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000483053	ENST00000359276		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000483053	ENST00000380241		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000483053	ENST00000483053		ChiTaRS3.1			CV403184	CTPS2	chrX	16673950	+	CTPS2	chrX	16659860	+
intron-intron	ENST00000319622	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000319622	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000319622	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000319622	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565184	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565184	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565184	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565184	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000389093	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000389093	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000389093	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000389093	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000335181	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000335181	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000335181	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000335181	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568883	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568883	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568883	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568883	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000449901	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000449901	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000449901	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000449901	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565154	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565154	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565154	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000565154	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568459	ENST00000305877		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568459	ENST00000359540		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568459	ENST00000398512		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-intron	ENST00000568459	ENST00000436990		ChiTaRS3.1			CV350694	PKM	chr15	72502083	+	BCR	chr22	23612698	+
intron-3UTR	ENST00000584911	ENST00000237536		ChiTaRS3.1			BE082954	LINC00473	chr6	166392759	-	SOGA1	chr20	35411403	-
intron-intron	ENST00000584911	ENST00000279034		ChiTaRS3.1			BE082954	LINC00473	chr6	166392759	-	SOGA1	chr20	35411403	-
intron-intron	ENST00000584911	ENST00000456801		ChiTaRS3.1			BE082954	LINC00473	chr6	166392759	-	SOGA1	chr20	35411403	-
intron-intron	ENST00000584911	ENST00000357779		ChiTaRS3.1			BE082954	LINC00473	chr6	166392759	-	SOGA1	chr20	35411403	-
intron-3CDS	ENST00000278412	ENST00000531120		ChiTaRS3.1			BF753104	SSRP1	chr11	57099366	+	EIF3M	chr11	32610231	+
intron-intron	ENST00000278412	ENST00000524896		ChiTaRS3.1			BF753104	SSRP1	chr11	57099366	+	EIF3M	chr11	32610231	+
intron-intron	ENST00000278412	ENST00000532054		ChiTaRS3.1			BF753104	SSRP1	chr11	57099366	+	EIF3M	chr11	32610231	+
intron-3UTR	ENST00000331872	ENST00000341998		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000331872	ENST00000286344		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-3UTR	ENST00000417584	ENST00000341998		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000417584	ENST00000286344		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-3UTR	ENST00000311223	ENST00000341998		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000311223	ENST00000286344		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-3UTR	ENST00000491322	ENST00000341998		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000491322	ENST00000286344		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-3UTR	ENST00000339526	ENST00000341998		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000339526	ENST00000286344		ChiTaRS3.1			BE765994	GLUL	chr1	182352482	-	SLC24A2	chr9	19509294	-
intron-intron	ENST00000301180	ENST00000301180		ChiTaRS3.1			CV336534	DIP2B	chr12	50928407	-	DIP2B	chr12	50924171	+
intron-intron	ENST00000370466	ENST00000409869		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
intron-intron	ENST00000370466	ENST00000295095		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
intron-intron	ENST00000370466	ENST00000473426		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
intron-intron	ENST00000463660	ENST00000409869		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
intron-intron	ENST00000463660	ENST00000295095		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
intron-intron	ENST00000463660	ENST00000473426		ChiTaRS3.1			BE180764	GBP2	chr1	89578348	+	ARHGAP15	chr2	144042688	-
3UTR-3UTR	ENST00000445937	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000445937	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000445937	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000445937	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000445937	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000531443	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000531443	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000531443	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000531443	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000531443	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000517566	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000517566	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000517566	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000517566	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000517566	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000452423	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000452423	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000452423	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000452423	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000452423	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000442977	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000442977	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000442977	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000442977	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000442977	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521963	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000521963	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521963	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000521963	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521963	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000312046	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000312046	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000312046	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000312046	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000312046	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000449762	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000449762	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000449762	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-intron	ENST00000449762	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
3UTR-3UTR	ENST00000449762	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000297447	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000297447	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000297447	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000297447	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000297447	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521592	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000521592	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521592	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000521592	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000521592	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000497705	ENST00000341049		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000497705	ENST00000393470		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000497705	ENST00000405348		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000497705	ENST00000393468		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-3UTR	ENST00000497705	ENST00000393467		ChiTaRS3.1			D61924	OXR1	chr8	107764771	-	CAV1	chr7	116201009	+
intron-intron	ENST00000377093	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377093	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377093	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377093	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377093	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377093	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000263934	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
3UTR-intron	ENST00000377086	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377083	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000377081	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000419488		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000354212		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000522391		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000536571		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000535697		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000465635	ENST00000517762		ChiTaRS3.1			BE702394	KIF1B	chr1	10436909	-	MAGI2	chr7	78043980	-
intron-intron	ENST00000378308	ENST00000378308		ChiTaRS3.1			BE066994	USP9X	chrX	41060019	-	USP9X	chrX	41059725	+
intron-intron	ENST00000378308	ENST00000324545		ChiTaRS3.1			BE066994	USP9X	chrX	41060019	-	USP9X	chrX	41059725	+
intron-intron	ENST00000324545	ENST00000378308		ChiTaRS3.1			BE066994	USP9X	chrX	41060019	-	USP9X	chrX	41059725	+
intron-intron	ENST00000324545	ENST00000324545		ChiTaRS3.1			BE066994	USP9X	chrX	41060019	-	USP9X	chrX	41059725	+
intron-3CDS	ENST00000481808	ENST00000239938		ChiTaRS3.1			BE669994	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
3UTR-3CDS	ENST00000224862	ENST00000239938		ChiTaRS3.1			BE669994	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
3UTR-3CDS	ENST00000369956	ENST00000239938		ChiTaRS3.1			BE669994	FBXL15	chr10	104182840	-	EGR1	chr5	137803056	+
intron-3CDS	ENST00000296137	ENST00000238256		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-intron	ENST00000296137	ENST00000493847		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-3CDS	ENST00000535325	ENST00000238256		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-intron	ENST00000535325	ENST00000493847		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-3CDS	ENST00000438446	ENST00000238256		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-intron	ENST00000438446	ENST00000493847		ChiTaRS3.1			BI023624	FYCO1	chr3	46023102	-	FKBP15	chr9	115945097	-
intron-intron	ENST00000296444	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000296444	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000444115	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000426002	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000465449	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000442747	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000373146		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000373141		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000291839		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000373142		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000373144		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000485320		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
intron-intron	ENST00000443308	ENST00000542456		ChiTaRS3.1			CV381644	SHISA5	chr3	48539849	+	ST6GALNAC6	chr9	130650448	+
In-frame	ENST00000392185	ENST00000392185		ChiTaRS3.1			CR995884	SNX9	chr6	158296143	-	SNX9	chr6	158317908	+
intron-intron	ENST00000513040	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000513040	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000285689	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000515200	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000544396	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000542322	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000514932	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000543198	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000502348	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000513040		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000285689		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000515200		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000544396		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000542322		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000514932		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000543198		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000502348		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000511134	ENST00000511134		ChiTaRS3.1			CB242194	GRAMD3	chr5	125810877	-	GRAMD3	chr5	125810566	+
intron-intron	ENST00000540235	ENST00000540235		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000540235	ENST00000393930		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000540235	ENST00000393931		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000540235	ENST00000310706		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393930	ENST00000540235		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393930	ENST00000393930		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393930	ENST00000393931		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393930	ENST00000310706		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393931	ENST00000540235		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393931	ENST00000393930		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393931	ENST00000393931		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000393931	ENST00000310706		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000310706	ENST00000540235		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000310706	ENST00000393930		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000310706	ENST00000393931		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
intron-intron	ENST00000310706	ENST00000310706		ChiTaRS3.1			DA459744	JUP	chr17	39779771	-	JUP	chr17	39780014	-
3UTR-3UTR	ENST00000380909	ENST00000380909		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000303434		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000395827		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000380909	ENST00000395829		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000380909		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000303434		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000395827		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000303434	ENST00000395829		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000380909		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000303434		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000395827		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000395827	ENST00000395829		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000380909		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000303434		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000395827		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
intron-3UTR	ENST00000395829	ENST00000395829		ChiTaRS3.1			BX108204	TRABD	chr22	50637488	-	TRABD	chr22	50637569	+
3UTR-3UTR	ENST00000359523	ENST00000359523		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-3UTR	ENST00000359523	ENST00000392121		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-intron	ENST00000359523	ENST00000474859		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-intron	ENST00000359523	ENST00000403379		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-3UTR	ENST00000392121	ENST00000359523		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-3UTR	ENST00000392121	ENST00000392121		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-intron	ENST00000392121	ENST00000474859		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
3UTR-intron	ENST00000392121	ENST00000403379		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-3UTR	ENST00000474859	ENST00000359523		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-3UTR	ENST00000474859	ENST00000392121		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-intron	ENST00000474859	ENST00000474859		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-intron	ENST00000474859	ENST00000403379		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-3UTR	ENST00000403379	ENST00000359523		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-3UTR	ENST00000403379	ENST00000392121		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-intron	ENST00000403379	ENST00000474859		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-intron	ENST00000403379	ENST00000403379		ChiTaRS3.1			CA420334	MPZL1	chr1	167759273	-	MPZL1	chr1	167759691	-
intron-intron	ENST00000491071	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000491071	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000348717	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000518273	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000522291	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517960	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000521978	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000520567	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000264839	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000401910	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000523963	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000425662	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000517827	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000538414	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000431478	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000491071		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000348717		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000518273		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000522291		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000517960		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000521978		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000520567		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000264839		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000401910		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000523963		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000425662		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000517827		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000538414		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000431478		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
intron-intron	ENST00000414192	ENST00000414192		ChiTaRS3.1			BF744774	RIMS1	chr6	73005638	-	RIMS1	chr6	73043538	-
5CDS-intron	ENST00000283206	ENST00000265113		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
5CDS-intron	ENST00000283206	ENST00000506725		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
5CDS-intron	ENST00000283206	ENST00000381918		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
3UTR-intron	ENST00000463427	ENST00000265113		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
3UTR-intron	ENST00000463427	ENST00000506725		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
3UTR-intron	ENST00000463427	ENST00000381918		ChiTaRS3.1			BF368084	TMEM87B	chr2	112854699	-	SLC1A3	chr5	36660079	-
5UTR-intron	ENST00000275262	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000275262	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000275262	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000275262	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000275262	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000275262	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000392127	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000453779	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
5UTR-intron	ENST00000361752	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000361195	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000275262		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000392127		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000453779		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000361752		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000361195		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000424802	ENST00000424802		ChiTaRS3.1			CD109394	QKI	chr6	163835830	+	QKI	chr6	163835666	+
intron-intron	ENST00000311966	ENST00000311966		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000311966	ENST00000476991		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000311966	ENST00000539272		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000476991	ENST00000311966		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000476991	ENST00000476991		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000476991	ENST00000539272		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000539272	ENST00000311966		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000539272	ENST00000476991		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
intron-intron	ENST00000539272	ENST00000539272		ChiTaRS3.1			AW894954	GLS2	chr12	56880346	+	GLS2	chr12	56876594	-
Frame-shit	ENST00000394609	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394609	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000405240	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000357376	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000317610	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000357732	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000337526	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000394611	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
In-frame	ENST00000404909	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-3CDS	ENST00000486085	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5UTR-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000354474	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000394609		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000405240		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000357376		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000317610		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000357732		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000337526		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000394611		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
Frame-shit	ENST00000402434	ENST00000404909		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
5CDS-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			BE007854	RTN4	chr2	55209651	-	RTN4	chr2	55214836	-
intron-3UTR	ENST00000447716	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000447716	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000447716	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395243	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000395243	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000453384	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000453384	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000301043	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000301043	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000450529	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000450529	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000415040	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000415040	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395242	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000395242	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000395245	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000395245	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000447716		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000395243		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000453384		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000301043		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000450529		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000415040		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000395242		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000436730	ENST00000395245		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-intron	ENST00000436730	ENST00000436730		ChiTaRS3.1			BM700264	RAB34	chr17	27041505	+	RAB34	chr17	27041537	-
intron-3UTR	ENST00000521746	ENST00000379589		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
intron-intron	ENST00000521746	ENST00000495922		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
3UTR-3UTR	ENST00000420274	ENST00000379589		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
3UTR-intron	ENST00000420274	ENST00000495922		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
3UTR-3UTR	ENST00000388745	ENST00000379589		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
3UTR-intron	ENST00000388745	ENST00000495922		ChiTaRS3.1			BM682864	PLEKHA2	chr8	38831104	-	LHFP	chr13	39917249	-
intron-intron	ENST00000301923	ENST00000301923		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000301923	ENST00000402203		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000301923	ENST00000454349		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000301923	ENST00000335727		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000301923	ENST00000497559		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000402203	ENST00000301923		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000402203	ENST00000402203		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000402203	ENST00000454349		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000402203	ENST00000335727		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000402203	ENST00000497559		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000454349	ENST00000301923		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000454349	ENST00000402203		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000454349	ENST00000454349		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000454349	ENST00000335727		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000454349	ENST00000497559		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000335727	ENST00000301923		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000335727	ENST00000402203		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000335727	ENST00000454349		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000335727	ENST00000335727		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000335727	ENST00000497559		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000497559	ENST00000301923		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000497559	ENST00000402203		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000497559	ENST00000454349		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000497559	ENST00000335727		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-intron	ENST00000497559	ENST00000497559		ChiTaRS3.1			BC078164	TNRC6B	chr22	40658672	+	TNRC6B	chr22	40642470	+
intron-3UTR	ENST00000327987	ENST00000375712		ChiTaRS3.1			R24404	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000327987	ENST00000418717		ChiTaRS3.1			R24404	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000559231	ENST00000375712		ChiTaRS3.1			R24404	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000559231	ENST00000418717		ChiTaRS3.1			R24404	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000361475	ENST00000515359		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000361475	ENST00000308775		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000361475	ENST00000541308		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000361475	ENST00000539901		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000361475	ENST00000545947		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000361475	ENST00000538711		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-intron	ENST00000361475	ENST00000479935		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000515359		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000308775		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000541308		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000539901		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000545947		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536701	ENST00000538711		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-intron	ENST00000536701	ENST00000479935		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000515359		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000308775		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000541308		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000539901		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000545947		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3UTR	ENST00000536724	ENST00000538711		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-intron	ENST00000536724	ENST00000479935		ChiTaRS3.1			BI058794	TGM2	chr20	36760149	+	DAG1	chr3	49571177	+
intron-3CDS	ENST00000434640	ENST00000434640		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380368		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380375		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380379		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000434640	ENST00000464040		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000434640		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380368		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380375		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380379		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380368	ENST00000464040		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000434640		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380368		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380375		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380379		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380375	ENST00000464040		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000434640		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380368		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380375		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380379		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380379	ENST00000464040		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000434640		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380368		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380375		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380379		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000464040	ENST00000464040		ChiTaRS3.1			BE671194	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3UTR	ENST00000312239	ENST00000312239		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000312239	ENST00000487117		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000312239	ENST00000375000		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000312239	ENST00000375003		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000487117	ENST00000312239		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000487117	ENST00000487117		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000487117	ENST00000375000		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000487117	ENST00000375003		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000375000	ENST00000312239		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000375000	ENST00000487117		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000375000	ENST00000375000		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000375000	ENST00000375003		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000375003	ENST00000312239		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000375003	ENST00000487117		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-intron	ENST00000375003	ENST00000375000		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3UTR	ENST00000375003	ENST00000375003		ChiTaRS3.1			BF091604	HP1BP3	chr1	21072124	+	HP1BP3	chr1	21071108	+
intron-3CDS	ENST00000544865	ENST00000315183		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000544865	ENST00000562829		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000544865	ENST00000395799		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000544865	ENST00000432286		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-3CDS	ENST00000263073	ENST00000315183		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000263073	ENST00000562829		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000263073	ENST00000395799		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000263073	ENST00000432286		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-3CDS	ENST00000354901	ENST00000315183		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000354901	ENST00000562829		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000354901	ENST00000395799		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000354901	ENST00000432286		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-3CDS	ENST00000536871	ENST00000315183		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000536871	ENST00000562829		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000536871	ENST00000395799		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000536871	ENST00000432286		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-3CDS	ENST00000573166	ENST00000315183		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000573166	ENST00000562829		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000573166	ENST00000395799		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-intron	ENST00000573166	ENST00000432286		ChiTaRS3.1			BF733944	SMG6	chr17	2203379	+	TNRC6A	chr16	24802489	-
intron-3CDS	ENST00000318037	ENST00000262288		ChiTaRS3.1			BI028074	RNF168	chr3	196197645	+	SCPEP1	chr17	55078282	-
intron-intron	ENST00000318037	ENST00000571898		ChiTaRS3.1			BI028074	RNF168	chr3	196197645	+	SCPEP1	chr17	55078282	-
intron-intron	ENST00000304636	ENST00000356448		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000304636	ENST00000465093		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000304636	ENST00000465817		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000304636	ENST00000483068		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000317840	ENST00000356448		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000317840	ENST00000465093		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000317840	ENST00000465817		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-intron	ENST00000317840	ENST00000483068		ChiTaRS3.1			CN367234	COL3A1	chr2	189876352	-	ARHGEF26	chr3	153938591	-
intron-3CDS	ENST00000380394	ENST00000380394		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380394	ENST00000498815		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380394	ENST00000380384		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380394	ENST00000315377		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380394	ENST00000380381		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-3CDS	ENST00000498815	ENST00000380394		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000498815	ENST00000498815		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000498815	ENST00000380384		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000498815	ENST00000315377		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000498815	ENST00000380381		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-3CDS	ENST00000380384	ENST00000380394		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380384	ENST00000498815		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380384	ENST00000380384		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380384	ENST00000315377		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380384	ENST00000380381		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-3CDS	ENST00000315377	ENST00000380394		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000315377	ENST00000498815		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000315377	ENST00000380384		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000315377	ENST00000315377		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000315377	ENST00000380381		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-3CDS	ENST00000380381	ENST00000380394		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380381	ENST00000498815		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380381	ENST00000380384		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380381	ENST00000315377		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000380381	ENST00000380381		ChiTaRS3.1			CB216724	RPS6	chr9	19378488	+	RPS6	chr9	19378437	-
intron-intron	ENST00000552983	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000552983	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000552983	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000332896	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000332896	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000332896	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000552033	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000552033	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000552033	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548483	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548483	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548483	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000542893	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000542893	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000542893	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000541813	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000541813	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000541813	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548330	ENST00000368732		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548330	ENST00000368733		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-intron	ENST00000548330	ENST00000477801		ChiTaRS3.1			BM975074	CRADD	chr12	94243514	-	S100A8	chr1	153362508	+
intron-3CDS	ENST00000263707	ENST00000263707		ChiTaRS3.1			AW997314	TFCP2L1	chr2	121995228	+	TFCP2L1	chr2	121983184	-
intron-intron	ENST00000280758	ENST00000391976		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000280758	ENST00000310931		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000280758	ENST00000391975		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000280758	ENST00000427183		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000280758	ENST00000476807		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000420571	ENST00000391976		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000420571	ENST00000310931		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000420571	ENST00000391975		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000420571	ENST00000427183		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000420571	ENST00000476807		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000490090	ENST00000391976		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000490090	ENST00000310931		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000490090	ENST00000391975		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000490090	ENST00000427183		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000490090	ENST00000476807		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000357167	ENST00000391976		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000357167	ENST00000310931		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000357167	ENST00000391975		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000357167	ENST00000427183		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000357167	ENST00000476807		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000494235	ENST00000391976		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000494235	ENST00000310931		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000494235	ENST00000391975		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000494235	ENST00000427183		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
intron-intron	ENST00000494235	ENST00000476807		ChiTaRS3.1			BI027304	BTBD11	chr12	107890738	+	HDLBP	chr2	242229168	-
In-frame	ENST00000342922	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000342922	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000342922	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402799	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000402799	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000311027	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000311027	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000406482	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000406482	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000407859	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000407859	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000349238	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000349238	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395344	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000395344	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000395336	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000395336	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000402192	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000402192	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
In-frame	ENST00000405573	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
5CDS-intron	ENST00000405573	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000342922		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000402799		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000311027		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000406482		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000407859		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000349238		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000395344		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000395336		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000402192		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-3CDS	ENST00000489415	ENST00000405573		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-intron	ENST00000489415	ENST00000489415		ChiTaRS3.1			BE799184	MADD	chr11	47336811	-	MADD	chr11	47345220	+
intron-intron	ENST00000305747	ENST00000399302		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
intron-intron	ENST00000305747	ENST00000527250		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
intron-intron	ENST00000305747	ENST00000527788		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
intron-intron	ENST00000392687	ENST00000399302		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
intron-intron	ENST00000392687	ENST00000527250		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
intron-intron	ENST00000392687	ENST00000527788		ChiTaRS3.1			BE085594	CERS6	chr2	169406305	-	QSER1	chr11	32926552	+
5CDS-intron	ENST00000366621	ENST00000591142		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366621	ENST00000591601		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366621	ENST00000309340		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366621	ENST00000250896		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-5UTR	ENST00000366621	ENST00000541165		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366621	ENST00000591588		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366621	ENST00000588014		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000591142		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000591601		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000309340		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000250896		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-5UTR	ENST00000472190	ENST00000541165		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000591588		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
3UTR-intron	ENST00000472190	ENST00000588014		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000591142		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000591601		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000309340		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000250896		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-5UTR	ENST00000366620	ENST00000541165		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000591588		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
5CDS-intron	ENST00000366620	ENST00000588014		ChiTaRS3.1			BE720244	KCNK1	chr1	233802576	+	MKNK2	chr19	2046405	+
Frame-shit	ENST00000323686	ENST00000323686		ChiTaRS3.1			L13434	RBM15B	chr3	51429023	-	RBM15B	chr3	51429274	+
intron-3CDS	ENST00000379441	ENST00000529230		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000379441	ENST00000415402		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000379441	ENST00000312055		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000379441	ENST00000354558		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-intron	ENST00000379441	ENST00000532321		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000179765	ENST00000529230		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000179765	ENST00000415402		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000179765	ENST00000312055		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000179765	ENST00000354558		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-intron	ENST00000179765	ENST00000532321		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000551812	ENST00000529230		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000551812	ENST00000415402		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000551812	ENST00000312055		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000551812	ENST00000354558		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-intron	ENST00000551812	ENST00000532321		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000549884	ENST00000529230		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000549884	ENST00000415402		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000549884	ENST00000312055		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000549884	ENST00000354558		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-intron	ENST00000549884	ENST00000532321		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000553222	ENST00000529230		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000553222	ENST00000415402		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000553222	ENST00000312055		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000553222	ENST00000354558		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-intron	ENST00000553222	ENST00000532321		ChiTaRS3.1			BI049504	BAZ2A	chr12	56995496	+	CKAP5	chr11	46801828	-
intron-3CDS	ENST00000367996	ENST00000367996		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000367996	ENST00000478394		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000367996	ENST00000367995		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-3CDS	ENST00000478394	ENST00000367996		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000478394	ENST00000478394		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000478394	ENST00000367995		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-3CDS	ENST00000367995	ENST00000367996		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000367995	ENST00000478394		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000367995	ENST00000367995		ChiTaRS3.1			BE774294	ADAMTS4	chr1	161160753	+	ADAMTS4	chr1	161161084	-
intron-intron	ENST00000260386	ENST00000260386		ChiTaRS3.1			BE175234	ITPKA	chr15	41788813	-	ITPKA	chr15	41788907	+
intron-3CDS	ENST00000267339	ENST00000339788		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000267339	ENST00000320816		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000267339	ENST00000545653		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000267339	ENST00000509337		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-intron	ENST00000267339	ENST00000512525		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000375758	ENST00000339788		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000375758	ENST00000320816		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000375758	ENST00000545653		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000375758	ENST00000509337		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-intron	ENST00000375758	ENST00000512525		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000489973	ENST00000339788		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000489973	ENST00000320816		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000489973	ENST00000545653		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000489973	ENST00000509337		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-intron	ENST00000489973	ENST00000512525		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000310847	ENST00000339788		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000310847	ENST00000320816		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000310847	ENST00000545653		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-3CDS	ENST00000310847	ENST00000509337		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
intron-intron	ENST00000310847	ENST00000512525		ChiTaRS3.1			BE929574	ANKRD10	chr13	111531171	+	DAB2	chr5	39376803	-
In-frame	ENST00000369797	ENST00000341657		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
In-frame	ENST00000369797	ENST00000570535		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
In-frame	ENST00000369797	ENST00000574367		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
5CDS-intron	ENST00000369797	ENST00000573722		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
5CDS-intron	ENST00000369797	ENST00000433651		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
intron-3CDS	ENST00000490787	ENST00000341657		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
intron-3CDS	ENST00000490787	ENST00000570535		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
intron-3CDS	ENST00000490787	ENST00000574367		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
intron-intron	ENST00000490787	ENST00000573722		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
intron-intron	ENST00000490787	ENST00000433651		ChiTaRS3.1			DW465984	PDCD11	chr10	105158283	+	ANKFY1	chr17	4080478	-
5CDS-intron	ENST00000262305	ENST00000262305		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000457159		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000262305	ENST00000450428		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000262305		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000457159		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000457159	ENST00000450428		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000262305		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000457159		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
5CDS-intron	ENST00000450428	ENST00000450428		ChiTaRS3.1			BM913664	RAB11FIP3	chr16	570756	+	RAB11FIP3	chr16	569565	+
intron-intron	ENST00000335895	ENST00000414350		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000343632		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000381756		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000405147		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000325180		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000337437		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000406772		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000335895	ENST00000488672		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000414350		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000343632		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000381756		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000405147		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000325180		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000337437		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000406772		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000514505	ENST00000488672		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000414350		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000343632		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000381756		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000405147		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000325180		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000337437		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000406772		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
intron-intron	ENST00000380591	ENST00000488672		ChiTaRS3.1			BI562704	BTF3	chr5	72794748	+	GGA1	chr22	38026981	+
5CDS-5UTR	ENST00000278795	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000278795	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000278795	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000278795	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000278795	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000305958	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000305958	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000305958	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000305958	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000305958	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000339123	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000339123	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000339123	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000339123	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000339123	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
3UTR-5UTR	ENST00000484515	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
3UTR-5UTR	ENST00000484515	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
3UTR-5UTR	ENST00000484515	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
3UTR-intron	ENST00000484515	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
3UTR-intron	ENST00000484515	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000346595	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000346595	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000346595	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000346595	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000346595	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000379460	ENST00000372853		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000379460	ENST00000452446		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-5UTR	ENST00000379460	ENST00000372850		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000379460	ENST00000372847		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
5CDS-intron	ENST00000379460	ENST00000483206		ChiTaRS3.1			BC019054	SMOX	chr20	4158151	-	URM1	chr9	131133640	+
intron-intron	ENST00000354725	ENST00000579940		ChiTaRS3.1			CN412384	SND1	chr7	127723842	+	MIR548AI	chr14	30106010	-
intron-intron	ENST00000467238	ENST00000579940		ChiTaRS3.1			CN412384	SND1	chr7	127723842	+	MIR548AI	chr14	30106010	-
intron-intron	ENST00000287272	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000287272	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000453357	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000453357	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000404895	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000404895	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000420357	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000420357	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000416672	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000416672	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000449677	ENST00000265717		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000449677	ENST00000393613		ChiTaRS3.1			T06404	UNC5D	chr8	35317123	-	PRKAR2B	chr7	106689677	+
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000534312	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000395850	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000533403	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000351554	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000415002	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000445143	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000426650	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000437761	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000527577	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000445143		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3UTR	ENST00000528700	ENST00000426650		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BE079924	CD59	chr11	33727243	-	CD59	chr11	33731474	-
intron-3CDS	ENST00000309007	ENST00000367178		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000309007	ENST00000461219		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000309007	ENST00000417268		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000309007	ENST00000367186		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-3CDS	ENST00000292385	ENST00000367178		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000292385	ENST00000461219		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000292385	ENST00000417268		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000292385	ENST00000367186		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-3CDS	ENST00000393565	ENST00000367178		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393565	ENST00000461219		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393565	ENST00000417268		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393565	ENST00000367186		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-3CDS	ENST00000393563	ENST00000367178		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393563	ENST00000461219		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393563	ENST00000417268		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000393563	ENST00000367186		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-3CDS	ENST00000512501	ENST00000367178		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000512501	ENST00000461219		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000512501	ENST00000417268		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
intron-intron	ENST00000512501	ENST00000367186		ChiTaRS3.1			M79054	DBN1	chr5	176886658	+	SCAF8	chr6	155126505	+
3UTR-3UTR	ENST00000244745	ENST00000244745		ChiTaRS3.1			BI088114	SOX4	chr6	21598385	-	SOX4	chr6	21598430	+
3UTR-intron	ENST00000244745	ENST00000543472		ChiTaRS3.1			BI088114	SOX4	chr6	21598385	-	SOX4	chr6	21598430	+
intron-3UTR	ENST00000543472	ENST00000244745		ChiTaRS3.1			BI088114	SOX4	chr6	21598385	-	SOX4	chr6	21598430	+
intron-intron	ENST00000543472	ENST00000543472		ChiTaRS3.1			BI088114	SOX4	chr6	21598385	-	SOX4	chr6	21598430	+
intron-3CDS	ENST00000259818	ENST00000344096		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
intron-3CDS	ENST00000259818	ENST00000393555		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
intron-intron	ENST00000259818	ENST00000537632		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
intron-3CDS	ENST00000473006	ENST00000344096		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
intron-3CDS	ENST00000473006	ENST00000393555		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
intron-intron	ENST00000473006	ENST00000537632		ChiTaRS3.1			DA506064	TUBB2B	chr6	3225949	-	DYRK2	chr12	68052307	+
5CDS-intron	ENST00000307741	ENST00000307741		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000307741	ENST00000586677		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000307741	ENST00000591149		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000307741	ENST00000395212		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000586677	ENST00000307741		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000586677	ENST00000586677		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000586677	ENST00000591149		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
5CDS-intron	ENST00000586677	ENST00000395212		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000591149	ENST00000307741		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000591149	ENST00000586677		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000591149	ENST00000591149		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000591149	ENST00000395212		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000395212	ENST00000307741		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000395212	ENST00000586677		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000395212	ENST00000591149		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000395212	ENST00000395212		ChiTaRS3.1			CN274744	THOP1	chr19	2807788	-	THOP1	chr19	2807865	+
intron-intron	ENST00000343638	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000343638	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000343638	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000343638	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000302904	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000302904	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000302904	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000302904	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000527034	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000527034	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000527034	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000527034	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000533177	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000533177	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000533177	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000533177	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000436088	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000436088	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000436088	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000436088	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000393606	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000393606	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000393606	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000393606	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000529383	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000529383	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000529383	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000529383	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000526094	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000526094	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000526094	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000526094	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000537550	ENST00000464451		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000537550	ENST00000243253		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000537550	ENST00000424880		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-3UTR	ENST00000537550	ENST00000483956		ChiTaRS3.1			BE835544	UBTF	chr17	42285808	-	SEC61A1	chr3	127789422	+
intron-intron	ENST00000229795	ENST00000341039		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000229795	ENST00000357500		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000229795	ENST00000542776		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000229794	ENST00000341039		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000229794	ENST00000357500		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000229794	ENST00000542776		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000468133	ENST00000341039		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000468133	ENST00000357500		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000468133	ENST00000542776		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000310795	ENST00000341039		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000310795	ENST00000357500		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000310795	ENST00000542776		ChiTaRS3.1			BM826654	MAPK14	chr6	36038835	+	POP5	chr12	121017812	-
intron-intron	ENST00000381602	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381602	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397962	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000309776	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000509513	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000397959	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381591	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000403354	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381607	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000402736	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000602682	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381604	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000381584	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000558098	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000545619	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000535374	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000381602		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000397962		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000309776		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000509513		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000397959		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000381591		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000403354		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000381607		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000402736		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000602682		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000381604		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000381584		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000558098		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000545619		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000535374		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000473115	ENST00000473115		ChiTaRS3.1			BX951104	ZMYND11	chr10	270820	-	ZMYND11	chr10	270706	+
intron-intron	ENST00000368346	ENST00000341394		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000368346	ENST00000389645		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000368346	ENST00000532820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000368346	ENST00000530820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000368346	ENST00000529307		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000368346	ENST00000533657		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000341394		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000389645		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000532820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000530820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000529307		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000392403	ENST00000533657		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000341394		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000389645		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000532820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000530820		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000529307		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-intron	ENST00000548830	ENST00000533657		ChiTaRS3.1			BM150614	ASH1L	chr1	155369436	-	CAPRIN1	chr11	34197541	-
intron-3CDS	ENST00000254636	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000254636	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000254636	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000449247	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000449247	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000410111	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000410111	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000442664	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000442664	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000409051	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000409051	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000254636		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000449247		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000410111		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000442664		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3CDS	ENST00000490238	ENST00000409051		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-intron	ENST00000490238	ENST00000490238		ChiTaRS3.1			CB854254	IMMT	chr2	86371423	+	IMMT	chr2	86371866	-
intron-3UTR	ENST00000358951	ENST00000373913		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000358951	ENST00000401952		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-intron	ENST00000358951	ENST00000373907		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000358951	ENST00000339266		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000358951	ENST00000475894		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-intron	ENST00000358951	ENST00000340491		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000462353	ENST00000373913		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000462353	ENST00000401952		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-intron	ENST00000462353	ENST00000373907		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000462353	ENST00000339266		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-3UTR	ENST00000462353	ENST00000475894		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-intron	ENST00000462353	ENST00000340491		ChiTaRS3.1			BI907334	RAB3GAP2	chr1	220445272	-	DLGAP4	chr20	35156004	+
intron-intron	ENST00000384974	ENST00000373996		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000313400		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000361209		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000361477		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000288520		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000341734		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000384974	ENST00000358637		ChiTaRS3.1			CD048524	MIR639	chr19	14675669	+	ASTN2	chr9	119942963	-
intron-intron	ENST00000303375	ENST00000275364		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000303375	ENST00000544127		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000303375	ENST00000491117		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000303375	ENST00000407904		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000303375	ENST00000407653		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000303375	ENST00000396960		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000275364		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000544127		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000491117		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000407904		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000407653		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000446119	ENST00000396960		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000275364		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000544127		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000491117		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000407904		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000407653		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000580916	ENST00000396960		ChiTaRS3.1			BF675674	MRC2	chr17	60746475	-	GNA12	chr7	2820977	-
intron-intron	ENST00000253363	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000253363	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000361162	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000528062	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000407261	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000397370	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000253363		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000361162		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000528062		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000407261		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000397370		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
intron-intron	ENST00000463098	ENST00000463098		ChiTaRS3.1			DW409934	RBM39	chr20	34300455	+	RBM39	chr20	34299514	+
In-frame	ENST00000378827	ENST00000378827		ChiTaRS3.1			CB306884	BMP2	chr20	6759677	-	BMP2	chr20	6759533	+
intron-3UTR	ENST00000331925	ENST00000233143		ChiTaRS3.1			BI869344	ACTG1	chr17	79477846	-	TMSB10	chr2	85133698	+
intron-3UTR	ENST00000573283	ENST00000233143		ChiTaRS3.1			BI869344	ACTG1	chr17	79477846	-	TMSB10	chr2	85133698	+
intron-3UTR	ENST00000575842	ENST00000233143		ChiTaRS3.1			BI869344	ACTG1	chr17	79477846	-	TMSB10	chr2	85133698	+
intron-3UTR	ENST00000575087	ENST00000233143		ChiTaRS3.1			BI869344	ACTG1	chr17	79477846	-	TMSB10	chr2	85133698	+
3UTR-intron	ENST00000537098	ENST00000265304		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-5UTR	ENST00000537098	ENST00000498107		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000537098	ENST00000469123		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000537098	ENST00000465582		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000537098	ENST00000484178		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000537098	ENST00000481508		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000539778	ENST00000265304		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-5UTR	ENST00000539778	ENST00000498107		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000539778	ENST00000469123		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000539778	ENST00000465582		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000539778	ENST00000484178		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
3UTR-intron	ENST00000539778	ENST00000481508		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000566513	ENST00000265304		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-5UTR	ENST00000566513	ENST00000498107		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000566513	ENST00000469123		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000566513	ENST00000465582		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000566513	ENST00000484178		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000566513	ENST00000481508		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000398040	ENST00000265304		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-5UTR	ENST00000398040	ENST00000498107		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000398040	ENST00000469123		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000398040	ENST00000465582		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000398040	ENST00000484178		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-intron	ENST00000398040	ENST00000481508		ChiTaRS3.1			CB240854	CMIP	chr16	81744955	-	SSBP1	chr7	141438215	+
intron-3UTR	ENST00000418919	ENST00000423620		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000418919	ENST00000433389		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000418919	ENST00000358397		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000418919	ENST00000454170		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000418919	ENST00000523347		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000258145	ENST00000423620		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000258145	ENST00000433389		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000258145	ENST00000358397		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000258145	ENST00000454170		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000258145	ENST00000523347		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000543646	ENST00000423620		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000543646	ENST00000433389		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000543646	ENST00000358397		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000543646	ENST00000454170		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000543646	ENST00000523347		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000542058	ENST00000423620		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000542058	ENST00000433389		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000542058	ENST00000358397		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000542058	ENST00000454170		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
intron-3UTR	ENST00000542058	ENST00000523347		ChiTaRS3.1			BE708454	GNS	chr12	65138375	+	ESRP1	chr8	95718977	-
5CDS-3UTR	ENST00000396651	ENST00000479054		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
5CDS-3UTR	ENST00000396651	ENST00000345716		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
5CDS-intron	ENST00000396651	ENST00000488380		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
5CDS-intron	ENST00000396651	ENST00000420808		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
5CDS-intron	ENST00000396651	ENST00000464280		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
intron-3UTR	ENST00000372209	ENST00000479054		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
intron-3UTR	ENST00000372209	ENST00000345716		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
intron-intron	ENST00000372209	ENST00000488380		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
intron-intron	ENST00000372209	ENST00000420808		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
intron-intron	ENST00000372209	ENST00000464280		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
3UTR-3UTR	ENST00000485390	ENST00000479054		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
3UTR-3UTR	ENST00000485390	ENST00000345716		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
3UTR-intron	ENST00000485390	ENST00000488380		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
3UTR-intron	ENST00000485390	ENST00000420808		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
3UTR-intron	ENST00000485390	ENST00000464280		ChiTaRS3.1			AW948714	RPS8	chr1	45242410	+	NISCH	chr3	52526529	+
5CDS-intron	ENST00000258484	ENST00000607772		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
5CDS-intron	ENST00000258484	ENST00000479339		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
5CDS-intron	ENST00000258484	ENST00000433165		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
intron-intron	ENST00000409654	ENST00000607772		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
intron-intron	ENST00000409654	ENST00000479339		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
intron-intron	ENST00000409654	ENST00000433165		ChiTaRS3.1			BF370504	EPC2	chr2	149528717	-	CNKSR3	chr6	154815783	-
intron-3CDS	ENST00000333743	ENST00000367607		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-intron	ENST00000333743	ENST00000490141		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-3CDS	ENST00000555083	ENST00000367607		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-intron	ENST00000555083	ENST00000490141		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-3CDS	ENST00000554786	ENST00000367607		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-intron	ENST00000554786	ENST00000490141		ChiTaRS3.1			DB067484	GABRG3	chr15	27406167	-	CEP350	chr1	180044155	+
intron-3CDS	ENST00000601806	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000601806	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000291281	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000291281	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000433867	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000433867	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000600194	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000600194	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000595515	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000595515	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000593492	ENST00000265340		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-3CDS	ENST00000593492	ENST00000506438		ChiTaRS3.1			BE839314	PRKD2	chr19	47207863	+	PITX1	chr5	134364863	+
intron-intron	ENST00000367657	ENST00000397035		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000397041		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000309890		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000397039		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000359983		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000352011		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367657	ENST00000397043		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000397035		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000397041		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000309890		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000397039		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000359983		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000352011		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000361833	ENST00000397043		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000397035		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000397041		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000309890		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000397039		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000359983		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000352011		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000367654	ENST00000397043		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000397035		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000397041		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000309890		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000397039		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000359983		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000352011		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000424564	ENST00000397043		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000397035		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000397041		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000309890		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000397039		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000359983		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000352011		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-intron	ENST00000281881	ENST00000397043		ChiTaRS3.1			BI025114	ASTN1	chr1	176884242	+	ATP2A3	chr17	3855304	-
intron-3CDS	ENST00000327443	ENST00000327443		ChiTaRS3.1			CN359274	SP1	chr12	53810082	+	SP1	chr12	53775446	+
intron-5UTR	ENST00000327443	ENST00000426431		ChiTaRS3.1			CN359274	SP1	chr12	53810082	+	SP1	chr12	53775446	+
3UTR-3CDS	ENST00000426431	ENST00000327443		ChiTaRS3.1			CN359274	SP1	chr12	53810082	+	SP1	chr12	53775446	+
3UTR-5UTR	ENST00000426431	ENST00000426431		ChiTaRS3.1			CN359274	SP1	chr12	53810082	+	SP1	chr12	53775446	+
intron-intron	ENST00000380394	ENST00000589037		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-5UTR	ENST00000380394	ENST00000253788		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380394	ENST00000589913		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380394	ENST00000590864		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000498815	ENST00000589037		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-5UTR	ENST00000498815	ENST00000253788		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000498815	ENST00000589913		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000498815	ENST00000590864		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380384	ENST00000589037		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-5UTR	ENST00000380384	ENST00000253788		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380384	ENST00000589913		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380384	ENST00000590864		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000315377	ENST00000589037		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-5UTR	ENST00000315377	ENST00000253788		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000315377	ENST00000589913		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000315377	ENST00000590864		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380381	ENST00000589037		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-5UTR	ENST00000380381	ENST00000253788		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380381	ENST00000589913		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-intron	ENST00000380381	ENST00000590864		ChiTaRS3.1			T59674	RPS6	chr9	19376507	+	RPL27	chr17	41150472	+
intron-3CDS	ENST00000325006	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000325006	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000325006	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000446544	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446544	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000446544	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000531335	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000531335	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000531335	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000474594	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000474594	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000474594	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000446212	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000446212	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000446212	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000490911	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000490911	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000490911	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-3CDS	ENST00000472554	ENST00000262033		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000537473		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000414274		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000436399		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-5UTR	ENST00000472554	ENST00000448157		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
intron-intron	ENST00000472554	ENST00000456859		ChiTaRS3.1			BE070114	AHCYL2	chr7	128909673	+	PTGES3	chr12	57066563	+
5CDS-intron	ENST00000253354	ENST00000336665		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
5CDS-intron	ENST00000253354	ENST00000304032		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
5CDS-intron	ENST00000253354	ENST00000409538		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
5CDS-intron	ENST00000253354	ENST00000428334		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
5CDS-intron	ENST00000253354	ENST00000409457		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
3UTR-intron	ENST00000464032	ENST00000336665		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
3UTR-intron	ENST00000464032	ENST00000304032		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
3UTR-intron	ENST00000464032	ENST00000409538		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
3UTR-intron	ENST00000464032	ENST00000428334		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
3UTR-intron	ENST00000464032	ENST00000409457		ChiTaRS3.1			BE933124	BPIFB1	chr20	31887764	+	AGAP1	chr2	236540326	-
intron-intron	ENST00000401558	ENST00000401558		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000401558	ENST00000404992		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000401558	ENST00000406957		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000401558	ENST00000481214		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000404992	ENST00000401558		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000404992	ENST00000404992		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000404992	ENST00000406957		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000404992	ENST00000481214		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000406957	ENST00000401558		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000406957	ENST00000404992		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000406957	ENST00000406957		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000406957	ENST00000481214		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000481214	ENST00000401558		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000481214	ENST00000404992		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000481214	ENST00000406957		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
intron-intron	ENST00000481214	ENST00000481214		ChiTaRS3.1			DB198554	XPO1	chr2	61713792	-	XPO1	chr2	61716065	-
Frame-shit	ENST00000380909	ENST00000380909		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000380909	ENST00000303434		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000380909	ENST00000395827		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000380909	ENST00000395829		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000303434	ENST00000380909		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000303434	ENST00000303434		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000303434	ENST00000395827		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000303434	ENST00000395829		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395827	ENST00000380909		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395827	ENST00000303434		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395827	ENST00000395827		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395827	ENST00000395829		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395829	ENST00000380909		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395829	ENST00000303434		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395829	ENST00000395827		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
Frame-shit	ENST00000395829	ENST00000395829		ChiTaRS3.1			BF205124	TRABD	chr22	50636510	-	TRABD	chr22	50636563	+
intron-3CDS	ENST00000314888	ENST00000314888		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-3CDS	ENST00000314888	ENST00000540444		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-5UTR	ENST00000314888	ENST00000464379		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-3CDS	ENST00000540444	ENST00000314888		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-3CDS	ENST00000540444	ENST00000540444		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-5UTR	ENST00000540444	ENST00000464379		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-3CDS	ENST00000464379	ENST00000314888		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-3CDS	ENST00000464379	ENST00000540444		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-5UTR	ENST00000464379	ENST00000464379		ChiTaRS3.1			W28594	TLN1	chr9	35704070	+	TLN1	chr9	35704172	-
intron-intron	ENST00000487874	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
intron-intron	ENST00000373340	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
intron-intron	ENST00000493328	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
intron-intron	ENST00000357182	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
intron-intron	ENST00000317538	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
intron-intron	ENST00000373333	ENST00000583456		ChiTaRS3.1			W81504	ZMYM6	chr1	35452070	+	MIR548AE2	chr16	48386227	-
5CDS-3UTR	ENST00000320785	ENST00000324041		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
5CDS-intron	ENST00000320785	ENST00000597441		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
5CDS-intron	ENST00000320785	ENST00000431178		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
intron-3UTR	ENST00000573815	ENST00000324041		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
intron-intron	ENST00000573815	ENST00000597441		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
intron-intron	ENST00000573815	ENST00000431178		ChiTaRS3.1			BI020974	KIF1C	chr17	4904527	-	KLK4	chr19	51410114	+
intron-3UTR	ENST00000392446	ENST00000392446		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000392446	ENST00000302345		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000392446	ENST00000591773		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000392446	ENST00000591732		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000302345	ENST00000392446		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000302345	ENST00000302345		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000302345	ENST00000591773		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000302345	ENST00000591732		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000591773	ENST00000392446		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000591773	ENST00000302345		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000591773	ENST00000591773		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000591773	ENST00000591732		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000591732	ENST00000392446		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-3UTR	ENST00000591732	ENST00000302345		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000591732	ENST00000591773		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000591732	ENST00000591732		ChiTaRS3.1			BE816214	CANT1	chr17	76988997	+	CANT1	chr17	76989080	-
intron-intron	ENST00000391860	ENST00000367837		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000527578		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000415177		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000367826		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000367824		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000445176		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000314674		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000367822		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000367820		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000391860	ENST00000525067		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000367837		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000527578		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000415177		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000367826		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000367824		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000445176		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000314674		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000367822		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000367820		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000321327	ENST00000525067		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000367837		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000527578		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000415177		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000367826		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000367824		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000445176		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000314674		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000367822		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000367820		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000525115	ENST00000525067		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000367837		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000527578		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000415177		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000367826		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000367824		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000445176		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000314674		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000367822		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000367820		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000530424	ENST00000525067		ChiTaRS3.1			CV361974	PGBD5	chr1	230480916	-	HBS1L	chr6	135304634	-
intron-intron	ENST00000416293	ENST00000314073		ChiTaRS3.1			AW969514	ALDH2	chr12	112242067	+	GLTSCR1L	chr6	42758649	+
intron-intron	ENST00000416293	ENST00000394168		ChiTaRS3.1			AW969514	ALDH2	chr12	112242067	+	GLTSCR1L	chr6	42758649	+
intron-intron	ENST00000261733	ENST00000314073		ChiTaRS3.1			AW969514	ALDH2	chr12	112242067	+	GLTSCR1L	chr6	42758649	+
intron-intron	ENST00000261733	ENST00000394168		ChiTaRS3.1			AW969514	ALDH2	chr12	112242067	+	GLTSCR1L	chr6	42758649	+
5CDS-intron	ENST00000358196	ENST00000523629		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000396218		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000265814		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000360348		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000436581		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000520724		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000518844		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000522163		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000422361		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
5CDS-intron	ENST00000358196	ENST00000521553		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000523629		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000396218		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000265814		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000360348		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000436581		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000520724		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000518844		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000522163		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000422361		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000375272	ENST00000521553		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000523629		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000396218		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000265814		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000360348		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000436581		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000520724		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000518844		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000522163		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000422361		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000344257	ENST00000521553		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000523629		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000396218		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000265814		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000360348		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000436581		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000520724		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000518844		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000522163		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000422361		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000429023	ENST00000521553		ChiTaRS3.1			M85674	GAD1	chr2	171715328	-	RUNX1T1	chr8	93030731	+
intron-intron	ENST00000418931	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000418931	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000418931	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000535465	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000535465	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000535465	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000471184	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000471184	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000471184	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411749	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411749	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411749	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441981	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441981	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441981	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000474044	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000474044	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000474044	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000550949	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000550949	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000550949	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000383102	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000383102	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000383102	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441857	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441857	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000441857	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000551599	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000551599	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000551599	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548608	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548608	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548608	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000492916	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000492916	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000492916	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000454006	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000454006	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000454006	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411424	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411424	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411424	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548235	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548235	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548235	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000472101	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000472101	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000472101	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000425130	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000425130	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000425130	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411558	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411558	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000411558	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000481615	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000481615	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000481615	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000553195	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000553195	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000553195	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399500	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399500	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399500	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399491	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399491	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000399491	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548907	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548907	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548907	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000469961	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000469961	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000469961	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000415996	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000415996	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000415996	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000447783	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000447783	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000447783	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548074	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548074	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000548074	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000491972	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000491972	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000491972	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000433800	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000433800	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000433800	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000444931	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000444931	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000444931	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000552574	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000552574	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000552574	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000461155	ENST00000478553		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000461155	ENST00000379400		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
intron-intron	ENST00000461155	ENST00000379376		ChiTaRS3.1			BF374124	HLA-DPB1	chr6	4530889	-	RASSF2	chr20	4791381	-
3UTR-3CDS	ENST00000257899	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000257899	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000257899	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000257899	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000257899	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000257899	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000548925	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000548925	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000548925	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000548925	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000548925	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000548925	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000549147	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000549147	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000549147	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000549147	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000549147	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000549147	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000547076	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000547076	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000547076	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000547076	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000547076	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000547076	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-3CDS	ENST00000551926	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-3CDS	ENST00000551926	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-3UTR	ENST00000551926	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-3UTR	ENST00000551926	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-intron	ENST00000551926	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-intron	ENST00000551926	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000548556	ENST00000257899		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3CDS	ENST00000548556	ENST00000548925		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000548556	ENST00000549147		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-3UTR	ENST00000548556	ENST00000547076		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000548556	ENST00000551926		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
3UTR-intron	ENST00000548556	ENST00000548556		ChiTaRS3.1			BF221814	BLOC1S1	chr12	56113413	-	BLOC1S1	chr12	56113321	+
intron-5UTR	ENST00000404826	ENST00000429829		ChiTaRS3.1			T05034	SDK1	chr7	3534292	-	XIST	chrX	73062459	-
intron-5UTR	ENST00000389531	ENST00000429829		ChiTaRS3.1			T05034	SDK1	chr7	3534292	-	XIST	chrX	73062459	-
intron-5UTR	ENST00000466611	ENST00000429829		ChiTaRS3.1			T05034	SDK1	chr7	3534292	-	XIST	chrX	73062459	-
5CDS-intron	ENST00000395867	ENST00000414778		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000373965		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395438		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000409834		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395440		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395446		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395442		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395445		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000373957		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395432		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395433		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000361849		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000395430		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000320301		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000437009		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000373955		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000395867	ENST00000463095		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000414778		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000373965		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395438		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000409834		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395440		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395446		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395442		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395445		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000373957		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395432		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395433		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000361849		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000395430		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000320301		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000437009		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000373955		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000374648	ENST00000463095		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000414778		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000373965		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395438		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000409834		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395440		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395446		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395442		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395445		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000373957		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395432		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395433		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000361849		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000395430		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000320301		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000437009		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000373955		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5CDS-intron	ENST00000357328	ENST00000463095		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000414778		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000373965		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395438		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000409834		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395440		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395446		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395442		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395445		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000373957		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395432		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395433		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000361849		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000395430		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000320301		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000437009		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000373955		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
5UTR-intron	ENST00000494133	ENST00000463095		ChiTaRS3.1			BC080534	ZNF248	chr10	38126543	-	PCDH15	chr10	55705960	+
3UTR-intron	ENST00000425690	ENST00000454300		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
3UTR-intron	ENST00000425690	ENST00000263635		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
3UTR-intron	ENST00000344956	ENST00000454300		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
3UTR-intron	ENST00000344956	ENST00000263635		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
3UTR-intron	ENST00000403059	ENST00000454300		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
3UTR-intron	ENST00000403059	ENST00000263635		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
intron-intron	ENST00000406449	ENST00000454300		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
intron-intron	ENST00000406449	ENST00000263635		ChiTaRS3.1			BE551934	PVR	chr19	45166706	-	TANC1	chr2	159955813	+
intron-3UTR	ENST00000415912	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000415912	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000357071	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000357071	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000374893	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000374893	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000436918	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000436918	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000264205	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000264205	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000528294	ENST00000417689		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3UTR	ENST00000528294	ENST00000317091		ChiTaRS3.1			AW882114	ECE1	chr1	21545023	+	CES2	chr16	66978741	-
intron-3CDS	ENST00000262960	ENST00000262960		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000262960	ENST00000598800		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000262960	ENST00000597849		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000262960	ENST00000594671		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000262960	ENST00000601173		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000598800	ENST00000262960		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000598800	ENST00000598800		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000598800	ENST00000597849		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000598800	ENST00000594671		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000598800	ENST00000601173		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000597849	ENST00000262960		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000597849	ENST00000598800		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000597849	ENST00000597849		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000597849	ENST00000594671		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000597849	ENST00000601173		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000594671	ENST00000262960		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000594671	ENST00000598800		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000594671	ENST00000597849		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000594671	ENST00000594671		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000594671	ENST00000601173		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000601173	ENST00000262960		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000601173	ENST00000598800		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000601173	ENST00000597849		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-3CDS	ENST00000601173	ENST00000594671		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000601173	ENST00000601173		ChiTaRS3.1			BM453854	DPP9	chr19	4697628	-	DPP9	chr19	4714121	-
intron-intron	ENST00000444397	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000444397	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000444397	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000360694	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000360694	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000360694	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000418635	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000418635	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000418635	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000448077	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000448077	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000448077	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000337400	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000337400	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000337400	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000311565	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000311565	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000311565	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000540939	ENST00000377044		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000540939	ENST00000377066		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-intron	ENST00000540939	ENST00000396272		ChiTaRS3.1			BF737994	PPARD	chr6	35367554	-	TMEM2	chr9	74367502	-
intron-3CDS	ENST00000261413	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000261413	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000261413	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000261413	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000261413	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000261413	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000457646	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000457646	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000457646	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000457646	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000457646	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000457646	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000513900	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000513900	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000513900	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000513900	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000513900	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000513900	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000515404	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000515404	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000515404	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000515404	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000515404	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000515404	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522562	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522562	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522562	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522562	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000522562	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000522562	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522095	ENST00000261413		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522095	ENST00000457646		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522095	ENST00000513900		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3CDS	ENST00000522095	ENST00000515404		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-5UTR	ENST00000522095	ENST00000522562		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-intron	ENST00000522095	ENST00000522095		ChiTaRS3.1			BI763814	MRPS27	chr5	71528331	+	MRPS27	chr5	71528292	-
intron-3UTR	ENST00000367306	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000367306	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000367306	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000367306	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000367306	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000367306	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000367306	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000340006	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000340006	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000340006	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000340006	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000340006	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000340006	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000340006	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000531916	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000531916	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000531916	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000531916	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000531916	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000531916	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000531916	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000532460	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000532460	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000532460	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000532460	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000532460	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000532460	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000532460	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000533432	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000533432	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000533432	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000533432	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000533432	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000533432	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000533432	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000526723	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000526723	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000526723	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000526723	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000526723	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000526723	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000526723	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000458271	ENST00000367306		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000458271	ENST00000340006		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000458271	ENST00000531916		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-3UTR	ENST00000458271	ENST00000532460		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000458271	ENST00000533432		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000458271	ENST00000526723		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000458271	ENST00000458271		ChiTaRS3.1			AW900244	CSRP1	chr1	201452740	-	CSRP1	chr1	201453416	-
intron-intron	ENST00000335325	ENST00000341056		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000396045		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000310758		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000396040		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000442504		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000448602		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000335325	ENST00000479447		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000341056		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000396045		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000310758		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000396040		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000442504		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000448602		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000320619	ENST00000479447		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000341056		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000396045		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000310758		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000396040		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000442504		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000448602		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000566250	ENST00000479447		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000341056		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000396045		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000310758		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000396040		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000442504		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000448602		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000567962	ENST00000479447		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000341056		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000396045		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000310758		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000396040		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000442504		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000448602		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
intron-intron	ENST00000564320	ENST00000479447		ChiTaRS3.1			AW834784	ZNRF1	chr16	75044668	-	ELMO1	chr7	37478725	-
5CDS-intron	ENST00000572681	ENST00000330978		ChiTaRS3.1			CD580494	CIC	chr19	42799163	+	BOLA2	chr16	29999653	+
intron-intron	ENST00000575839	ENST00000330978		ChiTaRS3.1			CD580494	CIC	chr19	42799163	+	BOLA2	chr16	29999653	+
5CDS-intron	ENST00000160740	ENST00000330978		ChiTaRS3.1			CD580494	CIC	chr19	42799163	+	BOLA2	chr16	29999653	+
5CDS-intron	ENST00000575354	ENST00000330978		ChiTaRS3.1			CD580494	CIC	chr19	42799163	+	BOLA2	chr16	29999653	+
intron-3CDS	ENST00000537403	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000537403	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000307712	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000307712	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000536508	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000536508	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000545328	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000545328	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000553925	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000553925	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000548032	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000548032	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000557280	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000557280	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000553970	ENST00000323853		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
intron-3CDS	ENST00000553970	ENST00000349783		ChiTaRS3.1			D44754	SEC23A	chr14	39560272	-	SNRNP200	chr2	96965108	+
3UTR-3UTR	ENST00000416947	ENST00000261497		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-3UTR	ENST00000416947	ENST00000537526		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-intron	ENST00000416947	ENST00000455117		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
intron-3UTR	ENST00000493503	ENST00000261497		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
intron-3UTR	ENST00000493503	ENST00000537526		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
intron-intron	ENST00000493503	ENST00000455117		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-3UTR	ENST00000270139	ENST00000261497		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-3UTR	ENST00000270139	ENST00000537526		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-intron	ENST00000270139	ENST00000455117		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-3UTR	ENST00000442357	ENST00000261497		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-3UTR	ENST00000442357	ENST00000537526		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
3UTR-intron	ENST00000442357	ENST00000455117		ChiTaRS3.1			BE530994	IFNAR1	chr21	34727892	+	USP22	chr17	20904143	-
intron-3CDS	ENST00000262746	ENST00000262144		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-5UTR	ENST00000262746	ENST00000562331		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-3CDS	ENST00000319248	ENST00000262144		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-5UTR	ENST00000319248	ENST00000562331		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-3CDS	ENST00000372079	ENST00000262144		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-5UTR	ENST00000372079	ENST00000562331		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-3CDS	ENST00000483583	ENST00000262144		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
intron-5UTR	ENST00000483583	ENST00000562331		ChiTaRS3.1			BF763254	PRDX1	chr1	45976866	-	WDR59	chr16	74985427	-
3UTR-3UTR	ENST00000429989	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000429989	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-3UTR	ENST00000429989	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000429989	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000429989	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000429989	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000429989	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000481124	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000481124	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000481124	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000481124	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000481124	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000481124	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000481124	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-3UTR	ENST00000372164	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000372164	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-3UTR	ENST00000372164	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000372164	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000372164	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000372164	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000372164	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000372158	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372158	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000372158	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372158	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372158	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372158	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372158	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000341863	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000341863	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000341863	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000341863	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000341863	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000341863	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000341863	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000372156	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372156	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000372156	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372156	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372156	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372156	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000372156	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000265450	ENST00000429989		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000265450	ENST00000481124		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-3UTR	ENST00000265450	ENST00000372164		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000265450	ENST00000372158		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000265450	ENST00000341863		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000265450	ENST00000372156		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
intron-intron	ENST00000265450	ENST00000265450		ChiTaRS3.1			BF754904	TSPAN14	chr10	82280276	-	TSPAN14	chr10	82280987	-
3UTR-intron	ENST00000322002	ENST00000375406		ChiTaRS3.1			M85404	SOX11	chr2	5841349	+	ACTL8	chr1	18093184	-
intron-3UTR	ENST00000483612	ENST00000377658		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000483612	ENST00000377663		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000467612		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000483612	ENST00000463043		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377658		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000292401	ENST00000377663		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000467612		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000292401	ENST00000463043		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377658		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-3UTR	ENST00000411734	ENST00000377663		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000467612		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000411734	ENST00000463043		ChiTaRS3.1			BF222364	AZGP1	chr7	99564420	+	KLHL21	chr1	6652843	+
intron-intron	ENST00000254321	ENST00000264818		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000254321	ENST00000524462		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000254321	ENST00000525621		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000254321	ENST00000529370		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-5UTR	ENST00000254321	ENST00000529422		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000482090	ENST00000264818		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000482090	ENST00000524462		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000482090	ENST00000525621		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000482090	ENST00000529370		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-5UTR	ENST00000482090	ENST00000529422		ChiTaRS3.1			R16584	ZNF700	chr19	12043326	+	TYK2	chr19	10461923	-
intron-intron	ENST00000464233	ENST00000272928		ChiTaRS3.1			BE836744	ROBO1	chr3	78987881	+	ACKR3	chr2	237481611	+
intron-intron	ENST00000436010	ENST00000272928		ChiTaRS3.1			BE836744	ROBO1	chr3	78987881	+	ACKR3	chr2	237481611	+
intron-intron	ENST00000495273	ENST00000272928		ChiTaRS3.1			BE836744	ROBO1	chr3	78987881	+	ACKR3	chr2	237481611	+
intron-intron	ENST00000467549	ENST00000272928		ChiTaRS3.1			BE836744	ROBO1	chr3	78987881	+	ACKR3	chr2	237481611	+
intron-intron	ENST00000466906	ENST00000272928		ChiTaRS3.1			BE836744	ROBO1	chr3	78987881	+	ACKR3	chr2	237481611	+
5UTR-intron	ENST00000220478	ENST00000559488		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000220478	ENST00000571680		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000220478	ENST00000435993		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000220478	ENST00000560629		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000542355	ENST00000559488		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000542355	ENST00000571680		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000542355	ENST00000435993		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
5UTR-intron	ENST00000542355	ENST00000560629		ChiTaRS3.1			T11184	SCG3	chr15	51973875	-	ITGB3	chr17	45381954	-
3UTR-3UTR	ENST00000561234	ENST00000561234		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000416165		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000561234	ENST00000560846		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000561234		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000416165		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000416165	ENST00000560846		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000561234		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000416165		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
3UTR-3UTR	ENST00000560846	ENST00000560846		ChiTaRS3.1			F13194	BAHD1	chr15	40759206	-	BAHD1	chr15	40759233	+
intron-intron	ENST00000560302	ENST00000371460		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560302	ENST00000371459		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560302	ENST00000371461		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560302	ENST00000306867		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560302	ENST00000371458		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560302	ENST00000459689		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000371460		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000371459		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000371461		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000306867		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000371458		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394518	ENST00000459689		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000371460		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000371459		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000371461		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000306867		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000371458		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000361243	ENST00000459689		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000371460		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000371459		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000371461		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000306867		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000371458		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000560579	ENST00000459689		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000371460		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000371459		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000371461		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000306867		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000371458		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000394510	ENST00000459689		ChiTaRS3.1			BX104484	AKAP13	chr15	86120746	+	SUPT3H	chr6	44942014	+
intron-intron	ENST00000381086	ENST00000371579		ChiTaRS3.1			DA021344	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000275521	ENST00000371579		ChiTaRS3.1			DA021344	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000381083	ENST00000371579		ChiTaRS3.1			DA021344	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
intron-intron	ENST00000465642	ENST00000371579		ChiTaRS3.1			DA021344	IGFBP3	chr7	45960789	-	DPP7	chr9	140008276	-
5CDS-5UTR	ENST00000331825	ENST00000331825		ChiTaRS3.1			CX758834	FTL	chr19	49469921	+	FTL	chr19	49468654	+
intron-intron	ENST00000262288	ENST00000262288		ChiTaRS3.1			BF508804	SCPEP1	chr17	55074124	-	SCPEP1	chr17	55075427	-
intron-intron	ENST00000262288	ENST00000571898		ChiTaRS3.1			BF508804	SCPEP1	chr17	55074124	-	SCPEP1	chr17	55075427	-
intron-intron	ENST00000571898	ENST00000262288		ChiTaRS3.1			BF508804	SCPEP1	chr17	55074124	-	SCPEP1	chr17	55075427	-
intron-intron	ENST00000571898	ENST00000571898		ChiTaRS3.1			BF508804	SCPEP1	chr17	55074124	-	SCPEP1	chr17	55075427	-
3UTR-3CDS	ENST00000251343	ENST00000397109		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
3UTR-3CDS	ENST00000251343	ENST00000337354		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
3UTR-3CDS	ENST00000251343	ENST00000350697		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
3UTR-3CDS	ENST00000251343	ENST00000397117		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
3UTR-3CDS	ENST00000251343	ENST00000383801		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
3UTR-intron	ENST00000251343	ENST00000492602		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000556842	ENST00000397109		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000556842	ENST00000337354		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000556842	ENST00000350697		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000556842	ENST00000397117		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000556842	ENST00000383801		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-intron	ENST00000556842	ENST00000492602		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000553935	ENST00000397109		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000553935	ENST00000337354		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000553935	ENST00000350697		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000553935	ENST00000397117		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000553935	ENST00000383801		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-intron	ENST00000553935	ENST00000492602		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000554268	ENST00000397109		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000554268	ENST00000337354		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000554268	ENST00000350697		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000554268	ENST00000397117		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-3CDS	ENST00000554268	ENST00000383801		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-intron	ENST00000554268	ENST00000492602		ChiTaRS3.1			BE161424	KHNYN	chr14	24908767	-	SEC13	chr3	10353671	-
intron-intron	ENST00000464233	ENST00000431877		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000464233	ENST00000320370		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000464233	ENST00000409001		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000464233	ENST00000428267		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000464233	ENST00000409136		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000464233	ENST00000467172		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000431877		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000320370		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000409001		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000428267		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000409136		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000436010	ENST00000467172		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000431877		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000320370		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000409001		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000428267		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000409136		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000495273	ENST00000467172		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000431877		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000320370		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000409001		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000428267		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000409136		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000467549	ENST00000467172		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000431877		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000320370		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000409001		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000428267		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000409136		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
intron-intron	ENST00000466906	ENST00000467172		ChiTaRS3.1			CV344394	ROBO1	chr3	78774272	+	SSFA2	chr2	182782310	+
In-frame	ENST00000360319	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000360319	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000360319	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000360319	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000360319	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000422373	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000422373	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000422373	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000422373	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000422373	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000369850	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000369850	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000369850	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000369850	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000369850	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000369856	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000369856	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000344736	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000344736	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
In-frame	ENST00000344736	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000344736	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000344736	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
5CDS-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000498491	ENST00000369856		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000498491	ENST00000344736		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BE838054	FLNA	chrX	153593717	-	FLNA	chrX	153593525	+
intron-intron	ENST00000523629	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000523629	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000396218	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000396218	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000265814	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000265814	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000360348	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000360348	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000436581	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000436581	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000520724	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000520724	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000518844	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000518844	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000522163	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000522163	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000422361	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000422361	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000521553	ENST00000424789		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000521553	ENST00000389520		ChiTaRS3.1			DQ202695	RUNX1T1	chr8	93078576	-	TANC2	chr17	61226151	+
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM949723	KMT2A	chr11	118354246	+	MLLT1	chr19	6272203	-
intron-intron	ENST00000374656	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000374656	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000374656	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000374656	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000478431	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000478431	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000478431	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000415941	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000415941	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000415941	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000479405	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000479405	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000479405	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000430233	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000430233	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000430233	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000482708	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000482708	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000482708	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000427374	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000427374	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000427374	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000472412	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000472412	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000472412	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-3UTR	ENST00000383212	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-3UTR	ENST00000383212	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000383212	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-3UTR	ENST00000498835	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-3UTR	ENST00000498835	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
3UTR-intron	ENST00000498835	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000436128	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000436128	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000436128	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000374656		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000478431		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000415941		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000479405		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000430233		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000482708		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000427374		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000472412		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000484884	ENST00000383212		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-3UTR	ENST00000484884	ENST00000498835		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000436128		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000484884	ENST00000484884		ChiTaRS3.1			BF740184	RING1	chr6	4412429	-	RING1	chr6	4412478	+
intron-intron	ENST00000287585	ENST00000287585		ChiTaRS3.1			T41094	LHFPL4	chr3	9550578	+	LHFPL4	chr3	9550652	-
intron-intron	ENST00000287585	ENST00000495730		ChiTaRS3.1			T41094	LHFPL4	chr3	9550578	+	LHFPL4	chr3	9550652	-
intron-intron	ENST00000495730	ENST00000287585		ChiTaRS3.1			T41094	LHFPL4	chr3	9550578	+	LHFPL4	chr3	9550652	-
intron-intron	ENST00000495730	ENST00000495730		ChiTaRS3.1			T41094	LHFPL4	chr3	9550578	+	LHFPL4	chr3	9550652	-
intron-intron	ENST00000306156	ENST00000306156		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000306156	ENST00000467135		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000306156	ENST00000394874		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000306156		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000467135		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000467135	ENST00000394874		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000306156		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000467135		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-intron	ENST00000394874	ENST00000394874		ChiTaRS3.1			BI056694	PRKCE	chr2	46091926	+	PRKCE	chr2	46091190	+
intron-5UTR	ENST00000596304	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596304	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596304	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596304	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000430157	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000430157	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000430157	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000430157	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596273	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596273	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596273	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000596273	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000442744	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000442744	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000442744	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000442744	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595683	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595683	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595683	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595683	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595158	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595158	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595158	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000595158	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000598780	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000598780	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000598780	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000598780	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000599551	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000599551	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000599551	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-5UTR	ENST00000599551	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000597451	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000597451	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000597451	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000597451	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000599595	ENST00000331925		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000599595	ENST00000573283		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000599595	ENST00000575842		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
5UTR-5UTR	ENST00000599595	ENST00000575087		ChiTaRS3.1			BC019044	UBA52	chr19	18684102	-	ACTG1	chr17	79479810	-
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF333334	KRI1	chr19	10673489	+	KRI1	chr19	10671695	+
intron-intron	ENST00000495075	ENST00000495075		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000495075	ENST00000310776		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000495075	ENST00000465056		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000495075	ENST00000478464		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000495075	ENST00000489521		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000310776	ENST00000495075		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000310776	ENST00000310776		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000310776	ENST00000465056		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000310776	ENST00000478464		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000310776	ENST00000489521		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000465056	ENST00000495075		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000465056	ENST00000310776		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000465056	ENST00000465056		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000465056	ENST00000478464		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000465056	ENST00000489521		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000478464	ENST00000495075		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000478464	ENST00000310776		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000478464	ENST00000465056		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000478464	ENST00000478464		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000478464	ENST00000489521		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000489521	ENST00000495075		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000489521	ENST00000310776		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000489521	ENST00000465056		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000489521	ENST00000478464		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
intron-intron	ENST00000489521	ENST00000489521		ChiTaRS3.1			BF329054	MRPS22	chr3	139075747	+	MRPS22	chr3	139075371	+
5UTR-3CDS	ENST00000351797	ENST00000523037		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000351797	ENST00000265229		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000351797	ENST00000439747		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000351797	ENST00000522038		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000351797	ENST00000518364		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-3CDS	ENST00000522858	ENST00000523037		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000522858	ENST00000265229		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000522858	ENST00000439747		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000522858	ENST00000522038		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000522858	ENST00000518364		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-3CDS	ENST00000520667	ENST00000523037		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520667	ENST00000265229		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520667	ENST00000439747		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520667	ENST00000522038		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520667	ENST00000518364		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-3CDS	ENST00000518946	ENST00000523037		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000518946	ENST00000265229		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000518946	ENST00000439747		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000518946	ENST00000522038		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-intron	ENST00000518946	ENST00000518364		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-3CDS	ENST00000520313	ENST00000523037		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520313	ENST00000265229		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520313	ENST00000439747		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520313	ENST00000522038		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
5UTR-intron	ENST00000520313	ENST00000518364		ChiTaRS3.1			DA331644	FAM114A2	chr5	153418417	-	MRPL22	chr5	154330379	+
intron-3CDS	ENST00000407071	ENST00000373830		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000407071	ENST00000495995		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-3CDS	ENST00000366518	ENST00000373830		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000366518	ENST00000495995		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-3CDS	ENST00000479506	ENST00000373830		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000479506	ENST00000495995		ChiTaRS3.1			BE008614	KIF26B	chr1	245349460	-	TRNAU1AP	chr1	28893865	+
intron-intron	ENST00000368073	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368073		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000326837		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368074		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			BI964144	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000262367	ENST00000406337		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000262367	ENST00000265713		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000262367	ENST00000396930		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000262367	ENST00000485568		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000382070	ENST00000406337		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000382070	ENST00000265713		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000382070	ENST00000396930		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
intron-intron	ENST00000382070	ENST00000485568		ChiTaRS3.1			AJ315151	CREBBP	chr16	3927349	-	KAT6A	chr8	41793271	-
5CDS-3UTR	ENST00000508628	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000508628	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000508628	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000508628	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000508628	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000508628	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000456466	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-intron	ENST00000456466	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000456466	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-intron	ENST00000456466	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000456466	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000456466	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000582970	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000582970	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000582970	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000582970	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000582970	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000582970	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000319921	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-intron	ENST00000319921	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000319921	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-intron	ENST00000319921	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000319921	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-3UTR	ENST00000319921	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000336301	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000336301	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000336301	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-intron	ENST00000336301	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000336301	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
5CDS-3UTR	ENST00000336301	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-3UTR	ENST00000427003	ENST00000508628		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-intron	ENST00000427003	ENST00000456466		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-3UTR	ENST00000427003	ENST00000582970		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-intron	ENST00000427003	ENST00000319921		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-3UTR	ENST00000427003	ENST00000336301		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
3UTR-3UTR	ENST00000427003	ENST00000427003		ChiTaRS3.1			BE074544	RNF213	chr17	78362491	+	RNF213	chr17	78367641	-
intron-intron	ENST00000301284	ENST00000399215		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000481477		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000399212		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000332131		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000399205		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000399208		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000399201		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000301284	ENST00000399207		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399215		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000481477		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399212		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000332131		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399205		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399208		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399201		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000586684	ENST00000399207		ChiTaRS3.1			R53594	HDGFRP2	chr19	4502317	+	SETD4	chr21	37411447	+
intron-intron	ENST00000575301	ENST00000575301		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-intron	ENST00000575301	ENST00000572893		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-3UTR	ENST00000575301	ENST00000302926		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-intron	ENST00000572893	ENST00000575301		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-intron	ENST00000572893	ENST00000572893		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-3UTR	ENST00000572893	ENST00000302926		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
3UTR-intron	ENST00000302926	ENST00000575301		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
3UTR-intron	ENST00000302926	ENST00000572893		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
3UTR-3UTR	ENST00000302926	ENST00000302926		ChiTaRS3.1			AW884444	NLGN2	chr17	7322777	+	NLGN2	chr17	7322585	+
intron-3CDS	ENST00000589026	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000589026	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000589026	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000609388	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000609388	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000609388	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000586907	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000586907	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000586907	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000442982	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000442982	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000442982	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000588973	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000588973	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000588973	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000608862	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000608862	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000608862	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000447891	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000447891	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000447891	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000432640	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000432640	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000432640	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000450803	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000450803	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000450803	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-3CDS	ENST00000586423	ENST00000263277		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000586423	ENST00000538399		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000586423	ENST00000540884		ChiTaRS3.1			BC062554	PSMD5-AS1	chr9	123605983	+	EHD2	chr19	48219880	+
intron-intron	ENST00000273450	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000273450	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000273450	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000273450	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000273450	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000472186	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000472186	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000472186	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000472186	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000472186	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000452905	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000452905	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000452905	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000452905	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000452905	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393434	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393434	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393434	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393434	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393434	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393431	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393431	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393431	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393431	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000393431	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000413612	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000413612	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000413612	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000413612	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000413612	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000455064	ENST00000454239		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000455064	ENST00000381890		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000455064	ENST00000475086		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000455064	ENST00000381895		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-intron	ENST00000455064	ENST00000223517		ChiTaRS3.1			BF365444	ALDH1L1	chr3	125848723	+	SPATA6L	chr9	4663915	+
intron-3UTR	ENST00000263549	ENST00000373731		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000263549	ENST00000474988		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000263549	ENST00000544295		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-3UTR	ENST00000263549	ENST00000449081		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000263549	ENST00000536244		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-3UTR	ENST00000470515	ENST00000373731		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000470515	ENST00000474988		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000470515	ENST00000544295		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-3UTR	ENST00000470515	ENST00000449081		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000470515	ENST00000536244		ChiTaRS3.1			BI260074	PARP12	chr7	139741528	+	KCTD20	chr6	36456087	+
intron-intron	ENST00000558351	ENST00000558351		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-3UTR	ENST00000558351	ENST00000334660		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-intron	ENST00000558351	ENST00000560397		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
3UTR-intron	ENST00000334660	ENST00000558351		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
3UTR-3UTR	ENST00000334660	ENST00000334660		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
3UTR-intron	ENST00000334660	ENST00000560397		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-intron	ENST00000560397	ENST00000558351		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-3UTR	ENST00000560397	ENST00000334660		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-intron	ENST00000560397	ENST00000560397		ChiTaRS3.1			DA427384	CHP1	chr15	41572508	+	CHP1	chr15	41573798	-
intron-3UTR	ENST00000301923	ENST00000269141		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000301923	ENST00000399380		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000402203	ENST00000269141		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000402203	ENST00000399380		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000454349	ENST00000269141		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000454349	ENST00000399380		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000335727	ENST00000269141		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000335727	ENST00000399380		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000497559	ENST00000269141		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-3UTR	ENST00000497559	ENST00000399380		ChiTaRS3.1			AW899304	TNRC6B	chr22	40580300	+	CDH2	chr18	25532113	-
intron-intron	ENST00000261714	ENST00000426263		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000261714	ENST00000475162		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000261714	ENST00000415851		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000261714	ENST00000372500		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000394819	ENST00000426263		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000394819	ENST00000475162		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000394819	ENST00000415851		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000394819	ENST00000372500		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000582669	ENST00000426263		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000582669	ENST00000475162		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000582669	ENST00000415851		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
intron-intron	ENST00000582669	ENST00000372500		ChiTaRS3.1			BE828104	BLMH	chr17	28576084	-	SLC2A1	chr1	43407053	-
5CDS-5UTR	ENST00000366603	ENST00000488594		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000366603	ENST00000358966		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000366603	ENST00000282841		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000366603	ENST00000391855		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000366603	ENST00000489692		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000366603	ENST00000476121		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000264183	ENST00000488594		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000264183	ENST00000358966		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000264183	ENST00000282841		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000264183	ENST00000391855		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000264183	ENST00000489692		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000264183	ENST00000476121		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000349213	ENST00000488594		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000349213	ENST00000358966		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000349213	ENST00000282841		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000349213	ENST00000391855		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-intron	ENST00000349213	ENST00000489692		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
5CDS-5UTR	ENST00000349213	ENST00000476121		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-5UTR	ENST00000494543	ENST00000488594		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-5UTR	ENST00000494543	ENST00000358966		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-5UTR	ENST00000494543	ENST00000282841		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-intron	ENST00000494543	ENST00000391855		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-intron	ENST00000494543	ENST00000489692		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-5UTR	ENST00000494543	ENST00000476121		ChiTaRS3.1			DA612754	ARID4B	chr1	235490229	-	GGPS1	chr1	235498555	+
intron-3CDS	ENST00000264235	ENST00000327064		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000264235	ENST00000344150		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000316626	ENST00000327064		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000316626	ENST00000344150		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000473886	ENST00000327064		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000473886	ENST00000344150		ChiTaRS3.1			BE883384	GSK3B	chr3	119813137	-	CARM1	chr19	10982488	+
intron-3CDS	ENST00000364938	ENST00000287437		ChiTaRS3.1			BM850764	SNHG3	chr1	28834675	+	NSMCE2	chr8	126369460	+
intron-3CDS	ENST00000364938	ENST00000522563		ChiTaRS3.1			BM850764	SNHG3	chr1	28834675	+	NSMCE2	chr8	126369460	+
intron-3CDS	ENST00000364938	ENST00000517315		ChiTaRS3.1			BM850764	SNHG3	chr1	28834675	+	NSMCE2	chr8	126369460	+
intron-intron	ENST00000364938	ENST00000521460		ChiTaRS3.1			BM850764	SNHG3	chr1	28834675	+	NSMCE2	chr8	126369460	+
intron-3UTR	ENST00000357056	ENST00000357056		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-3UTR	ENST00000357056	ENST00000328459		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-5UTR	ENST00000357056	ENST00000554654		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-3UTR	ENST00000328459	ENST00000357056		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-3UTR	ENST00000328459	ENST00000328459		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-5UTR	ENST00000328459	ENST00000554654		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-3UTR	ENST00000554654	ENST00000357056		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-3UTR	ENST00000554654	ENST00000328459		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-5UTR	ENST00000554654	ENST00000554654		ChiTaRS3.1			BM718654	TTC7B	chr14	91059855	+	TTC7B	chr14	91007520	-
intron-intron	ENST00000367435	ENST00000318560		ChiTaRS3.1			CV329774	CDC73	chr1	193171473	-	ABL1	chr9	133608574	+
intron-intron	ENST00000477868	ENST00000318560		ChiTaRS3.1			CV329774	CDC73	chr1	193171473	-	ABL1	chr9	133608574	+
intron-5UTR	ENST00000494188	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000494188	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000494188	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409892	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409892	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409784	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409784	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000398529	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000398529	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000409751	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000409751	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000260638	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000260638	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000505658		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000393227		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000311571		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000240304		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-5UTR	ENST00000356214	ENST00000544170		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000356214	ENST00000503798		ChiTaRS3.1			BC000604	RAB1A	chr2	65357209	+	LUC7L3	chr17	48797049	+
intron-intron	ENST00000253413	ENST00000465812		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000409052		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000361779		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000259206		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000354115		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000253413	ENST00000409930		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000399796	ENST00000465812		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000409052		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000361779		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000259206		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000354115		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399796	ENST00000409930		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000399798	ENST00000465812		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000409052		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000361779		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000259206		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000354115		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000399798	ENST00000409930		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-intron	ENST00000478963	ENST00000465812		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000409052		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000361779		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000259206		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000354115		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3UTR	ENST00000478963	ENST00000409930		ChiTaRS3.1			BF378274	ATP6V1E1	chr22	18075375	-	IL1RN	chr2	113890655	-
intron-3CDS	ENST00000372569	ENST00000372569		ChiTaRS3.1			BX294224	CRIP3	chr6	43275481	+	CRIP3	chr6	43275440	-
intron-3CDS	ENST00000372569	ENST00000274990		ChiTaRS3.1			BX294224	CRIP3	chr6	43275481	+	CRIP3	chr6	43275440	-
intron-3CDS	ENST00000274990	ENST00000372569		ChiTaRS3.1			BX294224	CRIP3	chr6	43275481	+	CRIP3	chr6	43275440	-
intron-3CDS	ENST00000274990	ENST00000274990		ChiTaRS3.1			BX294224	CRIP3	chr6	43275481	+	CRIP3	chr6	43275440	-
intron-3CDS	ENST00000234170	ENST00000361566		ChiTaRS3.1			BM838174	CEBPZ	chr2	37458535	-	KRT19	chr17	39684389	-
intron-intron	ENST00000325590	ENST00000421554		ChiTaRS3.1			AW873264	AMPH	chr7	38441967	-	SPANXA2-OT1	chrX	140698953	+
intron-intron	ENST00000356264	ENST00000421554		ChiTaRS3.1			AW873264	AMPH	chr7	38441967	-	SPANXA2-OT1	chrX	140698953	+
intron-intron	ENST00000428293	ENST00000421554		ChiTaRS3.1			AW873264	AMPH	chr7	38441967	-	SPANXA2-OT1	chrX	140698953	+
intron-intron	ENST00000471913	ENST00000421554		ChiTaRS3.1			AW873264	AMPH	chr7	38441967	-	SPANXA2-OT1	chrX	140698953	+
5UTR-intron	ENST00000280346	ENST00000389722		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000280346	ENST00000556626		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000280346	ENST00000389721		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000280346	ENST00000542895		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000280346	ENST00000389720		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000280346	ENST00000342835		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000389722		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000556626		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000389721		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000542895		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000389720		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
5UTR-intron	ENST00000393051	ENST00000342835		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000389722		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000556626		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000389721		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000542895		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000389720		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-intron	ENST00000537636	ENST00000342835		ChiTaRS3.1			H49884	DLAT	chr11	111896173	-	SPTB	chr14	65319074	-
intron-3CDS	ENST00000393791	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393791	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000393791	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000356411	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000356411	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000356411	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000424809	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000424809	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000424809	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393797	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000393797	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000393797	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550288	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550288	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000550288	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000430041	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000430041	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000430041	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550454	ENST00000537081		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000550454	ENST00000257861		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-intron	ENST00000550454	ENST00000550083		ChiTaRS3.1			BC004134	ARHGAP9	chr12	57894305	+	AVIL	chr12	58208011	-
intron-3CDS	ENST00000301067	ENST00000301067		ChiTaRS3.1			BI026654	KMT2D	chr12	49446424	-	KMT2D	chr12	49446073	+
intron-intron	ENST00000301067	ENST00000549743		ChiTaRS3.1			BI026654	KMT2D	chr12	49446424	-	KMT2D	chr12	49446073	+
intron-3CDS	ENST00000549743	ENST00000301067		ChiTaRS3.1			BI026654	KMT2D	chr12	49446424	-	KMT2D	chr12	49446073	+
intron-intron	ENST00000549743	ENST00000549743		ChiTaRS3.1			BI026654	KMT2D	chr12	49446424	-	KMT2D	chr12	49446073	+
intron-intron	ENST00000407559	ENST00000407559		ChiTaRS3.1			CB045894	WDR60	chr7	158700555	-	WDR60	chr7	158701774	-
intron-intron	ENST00000488498	ENST00000446856		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000264758		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000398125		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000513328		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000503455		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000355842		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000398123		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000398129		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000488498	ENST00000538860		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000446856		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000264758		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000398125		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000513328		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000503455		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000355842		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000398123		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000398129		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000368243	ENST00000538860		ChiTaRS3.1			D44764	C1orf61	chr1	156378403	+	ADD1	chr4	2895934	-
intron-intron	ENST00000263801	ENST00000393701		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000263801	ENST00000568461		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000263801	ENST00000288040		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000263801	ENST00000449317		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382039	ENST00000393701		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382039	ENST00000568461		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382039	ENST00000288040		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382039	ENST00000449317		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382044	ENST00000393701		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382044	ENST00000568461		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382044	ENST00000288040		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000382044	ENST00000449317		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000450115	ENST00000393701		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000450115	ENST00000568461		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000450115	ENST00000288040		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000450115	ENST00000449317		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000605155	ENST00000393701		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000605155	ENST00000568461		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000605155	ENST00000288040		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000605155	ENST00000449317		ChiTaRS3.1			BE179774	TP53BP1	chr15	43748577	+	CLEC18A	chr16	70195784	+
intron-intron	ENST00000409261	ENST00000409261		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409261	ENST00000409213		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409261	ENST00000405974		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409261	ENST00000317721		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409261	ENST00000473859		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409213	ENST00000409261		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409213	ENST00000409213		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409213	ENST00000405974		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409213	ENST00000317721		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000409213	ENST00000473859		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000405974	ENST00000409261		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000405974	ENST00000409213		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000405974	ENST00000405974		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000405974	ENST00000317721		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000405974	ENST00000473859		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000317721	ENST00000409261		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000317721	ENST00000409213		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000317721	ENST00000405974		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000317721	ENST00000317721		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000317721	ENST00000473859		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000473859	ENST00000409261		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000473859	ENST00000409213		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000473859	ENST00000405974		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000473859	ENST00000317721		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000473859	ENST00000473859		ChiTaRS3.1			DW422984	NCKAP5	chr2	133925161	-	NCKAP5	chr2	133925930	-
intron-intron	ENST00000256190	ENST00000533608		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000256190	ENST00000358681		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000256190	ENST00000395673		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000256190	ENST00000343631		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000256190	ENST00000529186		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000527019	ENST00000533608		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000527019	ENST00000358681		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000527019	ENST00000395673		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000527019	ENST00000343631		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-intron	ENST00000527019	ENST00000529186		ChiTaRS3.1			T17444	SBF2	chr11	10061662	+	EXT2	chr11	44266974	-
intron-3UTR	ENST00000375050	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000375050	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000375050	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000375050	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000375050	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000453487	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000453487	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453487	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453487	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453487	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549520	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549520	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549520	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549520	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549520	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000551389	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000551389	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551389	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551389	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551389	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549406	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549406	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549406	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549406	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549406	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000453961	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000453961	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453961	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453961	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000453961	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000553136	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000553136	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553136	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553136	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553136	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000547363	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000547363	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000547363	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000547363	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000547363	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000552094	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000552094	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000552094	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000552094	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000552094	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000420432	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000420432	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000420432	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000420432	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000420432	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000553184	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000553184	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553184	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553184	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000553184	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550085	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550085	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550085	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550085	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550085	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000383270	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000383270	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000383270	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000383270	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000383270	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000551651	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000551651	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551651	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551651	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000551651	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000546984	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000546984	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546984	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546984	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546984	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550532	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550532	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550532	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550532	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550532	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000431537	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000431537	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000431537	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000431537	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000431537	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549894	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549894	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549894	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549894	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549894	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000548572	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000548572	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548572	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548572	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548572	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000546976	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000546976	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546976	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546976	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000546976	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000433552	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000433552	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000433552	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000433552	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000433552	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550227	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000550227	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550227	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550227	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000550227	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549969	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000549969	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549969	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549969	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000549969	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000548776	ENST00000264071		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-3UTR	ENST00000548776	ENST00000540257		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548776	ENST00000601152		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548776	ENST00000598006		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
intron-intron	ENST00000548776	ENST00000596926		ChiTaRS3.1			BI035864	PBX2	chr6	3504787	-	TUBB4A	chr19	6494533	-
3UTR-3UTR	ENST00000317811	ENST00000590071		ChiTaRS3.1			BC033654	FJX1	chr11	35642026	-	WTIP	chr19	34991860	+
3UTR-3UTR	ENST00000317811	ENST00000270288		ChiTaRS3.1			BC033654	FJX1	chr11	35642026	-	WTIP	chr19	34991860	+
3UTR-3UTR	ENST00000532914	ENST00000590071		ChiTaRS3.1			BC033654	FJX1	chr11	35642026	-	WTIP	chr19	34991860	+
3UTR-3UTR	ENST00000532914	ENST00000270288		ChiTaRS3.1			BC033654	FJX1	chr11	35642026	-	WTIP	chr19	34991860	+
intron-3CDS	ENST00000384994	ENST00000377387		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000377390		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000377394		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000227503		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000334944		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000422298		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000433274		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-intron	ENST00000384994	ENST00000489544		ChiTaRS3.1			BX095574	NEAT1	chr11	65191295	+	SF1	chr11	64545509	-
intron-3UTR	ENST00000309415	ENST00000299824		ChiTaRS3.1			DA407504	SH3RF3	chr2	109795464	+	PPP1R16B	chr20	37547693	+
intron-3UTR	ENST00000309415	ENST00000373331		ChiTaRS3.1			DA407504	SH3RF3	chr2	109795464	+	PPP1R16B	chr20	37547693	+
intron-intron	ENST00000309415	ENST00000468265		ChiTaRS3.1			DA407504	SH3RF3	chr2	109795464	+	PPP1R16B	chr20	37547693	+
intron-3CDS	ENST00000234590	ENST00000234590		ChiTaRS3.1			AW882184	ENO1	chr1	8921371	-	ENO1	chr1	8923302	+
intron-3UTR	ENST00000351578	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000351578	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000351578	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000351578	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000351578	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000351578	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000515010	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000515010	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000515010	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000515010	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000515010	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000515010	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000505428	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000505428	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000505428	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000505428	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000505428	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000505428	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000512982	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000512982	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000512982	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000512982	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000512982	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000512982	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000540520	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000540520	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000540520	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000540520	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000540520	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000540520	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000503065	ENST00000351578		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000503065	ENST00000515010		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000503065	ENST00000505428		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000503065	ENST00000512982		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000503065	ENST00000540520		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-intron	ENST00000503065	ENST00000503065		ChiTaRS3.1			BE840894	FYB	chr5	39105929	-	FYB	chr5	39105975	+
intron-3UTR	ENST00000446450	ENST00000345317		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000446450	ENST00000539623		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000446450	ENST00000489977		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000354956	ENST00000345317		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354956	ENST00000539623		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354956	ENST00000489977		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000354449	ENST00000345317		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354449	ENST00000539623		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000354449	ENST00000489977		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-3UTR	ENST00000469654	ENST00000345317		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000469654	ENST00000539623		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000469654	ENST00000489977		ChiTaRS3.1			BX095644	ATG7	chr3	11473623	+	SKAP2	chr7	26708076	-
intron-intron	ENST00000233242	ENST00000429429		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000233242	ENST00000489418		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000233242	ENST00000318386		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000233242	ENST00000488267		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000399256	ENST00000429429		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000399256	ENST00000489418		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000399256	ENST00000318386		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-intron	ENST00000399256	ENST00000488267		ChiTaRS3.1			BX091114	APOB	chr2	21261503	-	SLBP	chr4	1699311	-
intron-3UTR	ENST00000374500	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000374500	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374500	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374500	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374500	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374500	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374500	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000488034	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000488034	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488034	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488034	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488034	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488034	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488034	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000607266	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000607266	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000607266	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000607266	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000607266	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000607266	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000607266	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000494751	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000494751	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000494751	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000494751	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000494751	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000494751	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000494751	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000488478	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000488478	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488478	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488478	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488478	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488478	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000488478	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000440279	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000440279	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440279	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440279	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440279	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440279	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440279	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000374496	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000374496	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374496	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374496	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374496	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374496	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000374496	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000492510	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000492510	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000492510	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000492510	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000492510	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000492510	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000492510	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000487148	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000487148	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000487148	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000487148	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000487148	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000487148	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000487148	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000440930	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000440930	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440930	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440930	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440930	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440930	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000440930	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000435267	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000435267	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000435267	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000435267	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000435267	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000435267	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000435267	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000485890	ENST00000296674		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-3UTR	ENST00000485890	ENST00000510210		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000485890	ENST00000512493		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000485890	ENST00000510019		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000485890	ENST00000507980		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000485890	ENST00000503605		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000485890	ENST00000511844		ChiTaRS3.1			H17554	CUTA	chr6	4866157	+	RPS23	chr5	81570373	-
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			CV336274	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			CV336274	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			CV336274	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			CV336274	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000452313	ENST00000422163		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000491100		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000313601		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000536647		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000440628		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000451956		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-intron	ENST00000452313	ENST00000266027		ChiTaRS3.1			BI031334	NPIPB7	chr16	28512693	+	GNAI2	chr3	50281808	+
intron-3UTR	ENST00000378564	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000378564	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000378564	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000321584	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000321584	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000321584	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000321603	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000321603	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000321603	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000342854	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000342854	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-intron	ENST00000342854	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000395029	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000395029	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-intron	ENST00000395029	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000432532	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000432532	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000432532	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000378560	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000378560	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-intron	ENST00000378560	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000520958	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000520958	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000520958	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000518915	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000518915	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000518915	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000395023	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-3UTR	ENST00000395023	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
3UTR-intron	ENST00000395023	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000517478	ENST00000263063		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-3UTR	ENST00000517478	ENST00000358107		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
intron-intron	ENST00000517478	ENST00000488290		ChiTaRS3.1			CN411934	TCF7	chr5	133482975	+	MTPAP	chr10	30599325	-
Frame-shit	ENST00000328908	ENST00000328908		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000328908	ENST00000397588		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000328908	ENST00000472453		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000449732		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000328908	ENST00000343762		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000328908		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000397588	ENST00000397588		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000397588	ENST00000472453		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000449732		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000397588	ENST00000343762		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000328908		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-3CDS	ENST00000472453	ENST00000397588		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-intron	ENST00000472453	ENST00000472453		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000449732		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
intron-5UTR	ENST00000472453	ENST00000343762		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000328908		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000449732	ENST00000397588		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000449732	ENST00000472453		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000449732		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000449732	ENST00000343762		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000328908		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
Frame-shit	ENST00000343762	ENST00000397588		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-intron	ENST00000343762	ENST00000472453		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000449732		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
5CDS-5UTR	ENST00000343762	ENST00000343762		ChiTaRS3.1			BF380094	CDYL	chr6	4892615	+	CDYL	chr6	4891945	+
In-frame	ENST00000351288	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000351288	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000351288	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000351288	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000453750	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000453750	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000453750	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000453750	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000409031	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000409031	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000409031	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000409031	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
In-frame	ENST00000431183	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000431183	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-5UTR	ENST00000431183	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5CDS-intron	ENST00000431183	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000443958	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000443958	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000443958	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000443958	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-3CDS	ENST00000339679	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-5UTR	ENST00000339679	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-5UTR	ENST00000339679	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
5UTR-intron	ENST00000339679	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000452225	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000452225	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000452225	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000452225	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000426662	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000426662	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000426662	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000426662	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000473720	ENST00000233114		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000409908		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000409476		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000539945		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000473720	ENST00000544381		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-5UTR	ENST00000473720	ENST00000394423		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-intron	ENST00000473720	ENST00000462944		ChiTaRS3.1			AW951984	SMPD4	chr2	130932487	-	MDH1	chr2	63821620	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766344	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766344	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000552828	ENST00000552828		ChiTaRS3.1			BE715024	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000552828	ENST00000378026		ChiTaRS3.1			BE715024	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000378026	ENST00000552828		ChiTaRS3.1			BE715024	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000378026	ENST00000378026		ChiTaRS3.1			BE715024	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000317147	ENST00000362477		ChiTaRS3.1			DA382194	CNOT1	chr16	58633428	-	RNU5E-1	chr5	80546776	-
intron-intron	ENST00000569240	ENST00000362477		ChiTaRS3.1			DA382194	CNOT1	chr16	58633428	-	RNU5E-1	chr5	80546776	-
intron-intron	ENST00000441024	ENST00000362477		ChiTaRS3.1			DA382194	CNOT1	chr16	58633428	-	RNU5E-1	chr5	80546776	-
intron-intron	ENST00000569732	ENST00000362477		ChiTaRS3.1			DA382194	CNOT1	chr16	58633428	-	RNU5E-1	chr5	80546776	-
intron-intron	ENST00000245138	ENST00000362477		ChiTaRS3.1			DA382194	CNOT1	chr16	58633428	-	RNU5E-1	chr5	80546776	-
intron-3CDS	ENST00000337288	ENST00000337288		ChiTaRS3.1			BI087484	STARD7	chr2	96861157	+	STARD7	chr2	96861089	-
intron-5UTR	ENST00000337288	ENST00000462501		ChiTaRS3.1			BI087484	STARD7	chr2	96861157	+	STARD7	chr2	96861089	-
intron-3CDS	ENST00000462501	ENST00000337288		ChiTaRS3.1			BI087484	STARD7	chr2	96861157	+	STARD7	chr2	96861089	-
intron-5UTR	ENST00000462501	ENST00000462501		ChiTaRS3.1			BI087484	STARD7	chr2	96861157	+	STARD7	chr2	96861089	-
intron-intron	ENST00000378004	ENST00000378004		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000378004	ENST00000274498		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000378004	ENST00000486650		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000274498	ENST00000378004		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000274498	ENST00000274498		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000274498	ENST00000486650		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000486650	ENST00000378004		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000486650	ENST00000274498		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-intron	ENST00000486650	ENST00000486650		ChiTaRS3.1			BF765404	ARHGAP26	chr5	142500553	-	ARHGAP26	chr5	142526946	-
intron-5UTR	ENST00000435607	ENST00000435607		ChiTaRS3.1			CD608184	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000435607	ENST00000578147		ChiTaRS3.1			CD608184	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000435607		ChiTaRS3.1			CD608184	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
intron-5UTR	ENST00000578147	ENST00000578147		ChiTaRS3.1			CD608184	SCN4A	chr17	62041095	-	SCN4A	chr17	62050205	-
Frame-shit	ENST00000225298	ENST00000225298		ChiTaRS3.1			BI059294	UTP18	chr17	49346267	+	UTP18	chr17	49340634	+
intron-3UTR	ENST00000268154	ENST00000319622		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000268154	ENST00000565184		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000268154	ENST00000389093		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000268154	ENST00000335181		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000268154	ENST00000568883		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000268154	ENST00000449901		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-intron	ENST00000268154	ENST00000565154		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-intron	ENST00000268154	ENST00000568459		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000319622		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000565184		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000389093		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000335181		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000568883		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3UTR	ENST00000560908	ENST00000449901		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-intron	ENST00000560908	ENST00000565154		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-intron	ENST00000560908	ENST00000568459		ChiTaRS3.1			AW884014	ZNF710	chr15	90608971	+	PKM	chr15	72491794	-
intron-3CDS	ENST00000585832	ENST00000291547		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
intron-3CDS	ENST00000585832	ENST00000432907		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
intron-intron	ENST00000585832	ENST00000607150		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
intron-3CDS	ENST00000600215	ENST00000291547		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
intron-3CDS	ENST00000600215	ENST00000432907		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
intron-intron	ENST00000600215	ENST00000607150		ChiTaRS3.1			DA500684	CIRBP-AS1	chr19	1271411	+	PKNOX1	chr21	44450156	+
Frame-shit	ENST00000394196	ENST00000579534		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000394196	ENST00000406285		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000579434		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000217800		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000394196	ENST00000582366		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000557381	ENST00000579534		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000557381	ENST00000406285		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000579434		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000217800		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000557381	ENST00000582366		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000420239	ENST00000579534		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
Frame-shit	ENST00000420239	ENST00000406285		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000579434		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000217800		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
5CDS-intron	ENST00000420239	ENST00000582366		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-3CDS	ENST00000536619	ENST00000579534		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-3CDS	ENST00000536619	ENST00000406285		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000579434		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000217800		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000536619	ENST00000582366		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-3CDS	ENST00000554122	ENST00000579534		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-3CDS	ENST00000554122	ENST00000406285		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000579434		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000217800		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
3UTR-intron	ENST00000554122	ENST00000582366		ChiTaRS3.1			BC142674	CHD2	chr15	93444530	+	POLI	chr18	51797728	+
intron-intron	ENST00000604900	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000604900	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000604900	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000604900	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000604900	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000412716	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000412716	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000412716	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000412716	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000412716	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000449723	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000449723	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000449723	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000449723	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
3UTR-intron	ENST00000449723	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549555	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549555	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549555	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549555	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549555	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439799	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439799	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439799	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439799	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439799	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000425012	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000425012	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000425012	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000425012	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000425012	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549732	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549732	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549732	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549732	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000549732	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551534	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551534	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551534	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551534	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551534	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551313	ENST00000410059		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551313	ENST00000409163		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551313	ENST00000393147		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551313	ENST00000310323		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000551313	ENST00000488208		ChiTaRS3.1			AW904644	DAZAP2	chr12	51636750	-	DPP10	chr2	115271193	+
intron-intron	ENST00000439951	ENST00000262738		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000439951	ENST00000395964		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000439951	ENST00000497509		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000313733	ENST00000262738		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000313733	ENST00000395964		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000313733	ENST00000497509		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000358053	ENST00000262738		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000358053	ENST00000395964		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000358053	ENST00000497509		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000471817	ENST00000262738		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000471817	ENST00000395964		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
intron-intron	ENST00000471817	ENST00000497509		ChiTaRS3.1			CV352764	OSBPL2	chr20	60851224	-	CELSR1	chr22	46899029	-
3UTR-intron	ENST00000402357	ENST00000348520		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000380038		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000389744		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000557575		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000553286		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000347839		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000555836		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000334553		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000246489		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000557450		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000554280		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000452929		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000402357	ENST00000445352		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000348520		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000380038		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000389744		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000557575		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000553286		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000347839		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000555836		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000334553		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000246489		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000557450		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000554280		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000452929		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000358295	ENST00000445352		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000348520		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000380038		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000389744		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000557575		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000553286		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000347839		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000555836		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000334553		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000246489		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000557450		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000554280		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000452929		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
3UTR-intron	ENST00000473898	ENST00000445352		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000348520		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000380038		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000389744		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000557575		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000553286		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000347839		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000555836		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000334553		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000246489		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000557450		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000554280		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000452929		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
intron-intron	ENST00000406880	ENST00000445352		ChiTaRS3.1			DA128534	FAM19A5	chr22	49146258	-	KLC1	chr14	104159368	-
5CDS-intron	ENST00000394670	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394670	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394670	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394670	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394670	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000321233	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000321233	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000321233	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000321233	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000321233	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394673	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394673	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394673	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394673	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000394673	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000341711	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000341711	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000341711	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000341711	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000341711	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000342555	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000342555	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000342555	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000342555	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000342555	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000577908	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000577908	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000577908	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000577908	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000577908	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
intron-intron	ENST00000584416	ENST00000543824		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
intron-intron	ENST00000584416	ENST00000433847		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
intron-intron	ENST00000584416	ENST00000433083		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
intron-intron	ENST00000584416	ENST00000544916		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
intron-intron	ENST00000584416	ENST00000536844		ChiTaRS3.1			CX785974	ZNF207	chr17	30696363	+	PHC1	chr12	9074658	+
5CDS-intron	ENST00000261778	ENST00000378004		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
5CDS-intron	ENST00000261778	ENST00000274498		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
5CDS-intron	ENST00000261778	ENST00000486650		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
intron-intron	ENST00000561931	ENST00000378004		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
intron-intron	ENST00000561931	ENST00000274498		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
intron-intron	ENST00000561931	ENST00000486650		ChiTaRS3.1			AW862884	TANGO6	chr16	69008008	+	ARHGAP26	chr5	142562548	-
intron-5UTR	ENST00000318443	ENST00000373290		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000318443	ENST00000459981		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-5UTR	ENST00000537340	ENST00000373290		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000537340	ENST00000459981		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-5UTR	ENST00000318424	ENST00000373290		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000318424	ENST00000459981		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-5UTR	ENST00000561213	ENST00000373290		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000561213	ENST00000459981		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-5UTR	ENST00000564751	ENST00000373290		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000564751	ENST00000459981		ChiTaRS3.1			AY358934	CD276	chr15	74002261	-	TSPAN15	chr10	71211269	+
intron-intron	ENST00000336418	ENST00000506722		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000394537		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000357077		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000264366		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000509550		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000510275		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000336418	ENST00000504887		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000506722		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000394537		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000357077		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000264366		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000509550		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000510275		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000558011	ENST00000504887		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000506722		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000394537		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000357077		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000264366		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000509550		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000510275		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560940	ENST00000504887		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000506722		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000394537		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000357077		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000264366		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000509550		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000510275		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-intron	ENST00000560771	ENST00000504887		ChiTaRS3.1			T57754	AP3S2	chr15	90415631	+	ANK2	chr4	113976583	-
intron-3CDS	ENST00000234590	ENST00000234590		ChiTaRS3.1			CN406714	ENO1	chr1	8938698	+	ENO1	chr1	8932019	-
5CDS-3UTR	ENST00000368694	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368694	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-intron	ENST00000495554	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000403433	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368690	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368687	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368694		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000495554		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000403433		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368690		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368687		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368686	ENST00000368686		ChiTaRS3.1			CA428774	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
intron-intron	ENST00000406606	ENST00000264852		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000406606	ENST00000393830		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000406606	ENST00000463226		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371850	ENST00000264852		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371850	ENST00000393830		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371850	ENST00000463226		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371851	ENST00000264852		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371851	ENST00000393830		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000371851	ENST00000463226		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000486113	ENST00000264852		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000486113	ENST00000393830		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-intron	ENST00000486113	ENST00000463226		ChiTaRS3.1			BE502634	VAV2	chr9	136627246	+	SIDT1	chr3	113328260	+
intron-5UTR	ENST00000304043	ENST00000304043		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000304043	ENST00000506207		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000304043	ENST00000508488		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000304043	ENST00000506908		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000304043	ENST00000513012		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506207	ENST00000304043		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000506207	ENST00000506207		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506207	ENST00000508488		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506207	ENST00000506908		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506207	ENST00000513012		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000508488	ENST00000304043		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000508488	ENST00000506207		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000508488	ENST00000508488		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000508488	ENST00000506908		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000508488	ENST00000513012		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506908	ENST00000304043		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000506908	ENST00000506207		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506908	ENST00000508488		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506908	ENST00000506908		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000506908	ENST00000513012		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000513012	ENST00000304043		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000513012	ENST00000506207		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000513012	ENST00000508488		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000513012	ENST00000506908		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-5UTR	ENST00000513012	ENST00000513012		ChiTaRS3.1			U51004	HINT1	chr5	130495247	+	HINT1	chr5	130500947	-
intron-intron	ENST00000342992	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342992	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342992	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342992	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000342992	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000342992	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000460472	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000460472	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000460472	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000460472	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000460472	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000460472	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000589042	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000589042	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000589042	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000589042	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000589042	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000589042	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342175	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342175	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342175	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000342175	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000342175	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000342175	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000359218	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000359218	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000359218	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000359218	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000359218	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000359218	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000591111	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000591111	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000591111	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000591111	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000591111	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000591111	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000360870	ENST00000595444		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000360870	ENST00000600434		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000360870	ENST00000597996		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-intron	ENST00000360870	ENST00000594999		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000360870	ENST00000252602		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000360870	ENST00000602206		ChiTaRS3.1			Z19494	TTN	chr2	179554605	+	MRPL34	chr19	17417464	-
intron-3UTR	ENST00000367858	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000367858	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000524929	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000524929	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000413996	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000413996	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000237305	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000237305	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000367857	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000367857	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000528577	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000528577	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000475719	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000475719	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-3UTR	ENST00000489458	ENST00000225388		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
intron-intron	ENST00000489458	ENST00000579665		ChiTaRS3.1			BE178054	SGK1	chr6	134491373	+	NUFIP2	chr17	27583753	+
In-frame	ENST00000415708	ENST00000225964		ChiTaRS3.1			CN342164	FYTTD1	chr3	197495397	-	COL1A1	chr17	48273726	-
In-frame	ENST00000428395	ENST00000225964		ChiTaRS3.1			CN342164	FYTTD1	chr3	197495397	-	COL1A1	chr17	48273726	-
In-frame	ENST00000241502	ENST00000225964		ChiTaRS3.1			CN342164	FYTTD1	chr3	197495397	-	COL1A1	chr17	48273726	-
In-frame	ENST00000424384	ENST00000225964		ChiTaRS3.1			CN342164	FYTTD1	chr3	197495397	-	COL1A1	chr17	48273726	-
intron-3CDS	ENST00000492360	ENST00000225964		ChiTaRS3.1			CN342164	FYTTD1	chr3	197495397	-	COL1A1	chr17	48273726	-
intron-intron	ENST00000486687	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000486687	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000486687	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000486687	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000486687	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000350136	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000350136	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000350136	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000350136	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000350136	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000392045	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000392045	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000392045	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000392045	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000392045	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000417495	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000417495	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000417495	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000417495	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000417495	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000343805	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000343805	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000343805	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000343805	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000343805	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000420434	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000420434	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000420434	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000420434	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000420434	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000373645	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000373645	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000373645	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000373645	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000373645	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000544128	ENST00000453654		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000544128	ENST00000288490		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000544128	ENST00000424189		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000544128	ENST00000446122		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
intron-intron	ENST00000544128	ENST00000494390		ChiTaRS3.1			BF357704	SP140	chr2	231118475	-	DGKI	chr7	137498017	+
3UTR-3CDS	ENST00000371661	ENST00000341267		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000371661	ENST00000331224		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000371661	ENST00000556051		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-3CDS	ENST00000545326	ENST00000341267		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000545326	ENST00000331224		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000545326	ENST00000556051		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-3CDS	ENST00000492540	ENST00000341267		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000492540	ENST00000331224		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
3UTR-intron	ENST00000492540	ENST00000556051		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
Frame-shit	ENST00000247665	ENST00000341267		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
5CDS-intron	ENST00000247665	ENST00000331224		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
5CDS-intron	ENST00000247665	ENST00000556051		ChiTaRS3.1			DB295254	PHPT1	chr9	139745297	-	DLK1	chr14	101200771	-
5CDS-intron	ENST00000290607	ENST00000337338		ChiTaRS3.1			BF370574	STARD9	chr15	42984346	+	LRRC8D	chr1	90351650	-
5CDS-intron	ENST00000290607	ENST00000394593		ChiTaRS3.1			BF370574	STARD9	chr15	42984346	+	LRRC8D	chr1	90351650	-
intron-intron	ENST00000310380	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000310380	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000310380	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000437101	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000437101	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000437101	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000429994	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000429994	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000429994	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000355729	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000355729	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000355729	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000460582	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000460582	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000460582	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000356740	ENST00000450993		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000356740	ENST00000417849		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
intron-intron	ENST00000356740	ENST00000432688		ChiTaRS3.1			CV404934	XXYLT1	chr3	194878771	-	PLCD4	chr2	219499050	-
In-frame	ENST00000534358	ENST00000264033		ChiTaRS3.1			AY125965	KMT2A	chr11	118353213	+	CBL	chr11	119155677	+
In-frame	ENST00000389506	ENST00000264033		ChiTaRS3.1			AY125965	KMT2A	chr11	118353213	+	CBL	chr11	119155677	+
In-frame	ENST00000354520	ENST00000264033		ChiTaRS3.1			AY125965	KMT2A	chr11	118353213	+	CBL	chr11	119155677	+
intron-3CDS	ENST00000420751	ENST00000264033		ChiTaRS3.1			AY125965	KMT2A	chr11	118353213	+	CBL	chr11	119155677	+
In-frame	ENST00000562955	ENST00000562955		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
In-frame	ENST00000562955	ENST00000372442		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000562955	ENST00000310739		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000562955	ENST00000372450		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000562955	ENST00000471177		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
In-frame	ENST00000372442	ENST00000562955		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
In-frame	ENST00000372442	ENST00000372442		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000372442	ENST00000310739		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000372442	ENST00000372450		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
5CDS-intron	ENST00000372442	ENST00000471177		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000310739	ENST00000562955		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000310739	ENST00000372442		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000310739	ENST00000310739		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000310739	ENST00000372450		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000310739	ENST00000471177		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000372450	ENST00000562955		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000372450	ENST00000372442		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000372450	ENST00000310739		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000372450	ENST00000372450		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000372450	ENST00000471177		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000471177	ENST00000562955		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-3CDS	ENST00000471177	ENST00000372442		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000471177	ENST00000310739		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000471177	ENST00000372450		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
intron-intron	ENST00000471177	ENST00000471177		ChiTaRS3.1			BI011824	SZT2	chr1	43913274	+	SZT2	chr1	43913832	-
3UTR-3CDS	ENST00000312358	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
3UTR-3CDS	ENST00000485813	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
intron-3CDS	ENST00000396698	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
intron-3CDS	ENST00000396695	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
intron-3CDS	ENST00000396688	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
intron-3CDS	ENST00000396686	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
intron-3CDS	ENST00000396689	ENST00000308683		ChiTaRS3.1			Z28494	SPEG	chr2	220358258	-	ZNF622	chr5	16465475	-
Frame-shit	ENST00000582888	ENST00000361658		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000582888	ENST00000395544		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000582888	ENST00000580130		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000602676	ENST00000361658		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000602676	ENST00000395544		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000602676	ENST00000580130		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000322297	ENST00000361658		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000322297	ENST00000395544		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000322297	ENST00000580130		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000583542	ENST00000361658		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
Frame-shit	ENST00000583542	ENST00000395544		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
5CDS-intron	ENST00000583542	ENST00000580130		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-3CDS	ENST00000588673	ENST00000361658		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-3CDS	ENST00000588673	ENST00000395544		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-intron	ENST00000588673	ENST00000580130		ChiTaRS3.1			DB259274	OAZ1	chr19	2269743	+	ULK2	chr17	19769143	-
intron-intron	ENST00000435064	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000435064	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000411962	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000462432	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000540437	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000421495	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000419704	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000450926	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000435064		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000411962		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000462432		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000540437		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000421495		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000419704		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000450926		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
intron-intron	ENST00000545578	ENST00000545578		ChiTaRS3.1			BY799464	CPSF3L	chr1	1250803	+	CPSF3L	chr1	1250770	-
5CDS-intron	ENST00000371068	ENST00000271526		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000371068	ENST00000353233		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000371068	ENST00000491853		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
intron-intron	ENST00000491749	ENST00000271526		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
intron-intron	ENST00000491749	ENST00000353233		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
intron-intron	ENST00000491749	ENST00000491853		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000433625	ENST00000271526		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000433625	ENST00000353233		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000433625	ENST00000491853		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000538167	ENST00000271526		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000538167	ENST00000353233		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
5CDS-intron	ENST00000538167	ENST00000491853		ChiTaRS3.1			AW974574	EFHC1	chr6	52344445	-	PRCC	chr1	156759656	-
intron-intron	ENST00000321276	ENST00000395002		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000264344		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000503556		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000511976		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000508369		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000513837		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000502459		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000509094		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
intron-intron	ENST00000321276	ENST00000515600		ChiTaRS3.1			AW847114	SGPP2	chr2	223298432	-	FAM13A	chr4	89673550	+
Frame-shit	ENST00000394196	ENST00000394196		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
Frame-shit	ENST00000394196	ENST00000557381		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000394196	ENST00000420239		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000394196	ENST00000536619		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000394196	ENST00000554122		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
Frame-shit	ENST00000557381	ENST00000394196		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
Frame-shit	ENST00000557381	ENST00000557381		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000557381	ENST00000420239		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000557381	ENST00000536619		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
5CDS-intron	ENST00000557381	ENST00000554122		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000420239	ENST00000394196		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000420239	ENST00000557381		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000420239	ENST00000420239		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000420239	ENST00000536619		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000420239	ENST00000554122		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000536619	ENST00000394196		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000536619	ENST00000557381		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000536619	ENST00000420239		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000536619	ENST00000536619		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000536619	ENST00000554122		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000554122	ENST00000394196		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-3CDS	ENST00000554122	ENST00000557381		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000554122	ENST00000420239		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000554122	ENST00000536619		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000554122	ENST00000554122		ChiTaRS3.1			BI035224	CHD2	chr15	93545548	+	CHD2	chr15	93540185	+
intron-intron	ENST00000370211	ENST00000390168		ChiTaRS3.1			DA451864	HAUS7	chrX	152770780	+	H19	chr11	2018816	-
intron-intron	ENST00000484394	ENST00000390168		ChiTaRS3.1			DA451864	HAUS7	chrX	152770780	+	H19	chr11	2018816	-
intron-intron	ENST00000421080	ENST00000390168		ChiTaRS3.1			DA451864	HAUS7	chrX	152770780	+	H19	chr11	2018816	-
intron-intron	ENST00000370212	ENST00000390168		ChiTaRS3.1			DA451864	HAUS7	chrX	152770780	+	H19	chr11	2018816	-
intron-intron	ENST00000370210	ENST00000390168		ChiTaRS3.1			DA451864	HAUS7	chrX	152770780	+	H19	chr11	2018816	-
intron-3UTR	ENST00000322231	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000339077	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000539124	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000542558	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000409689	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000545443	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000479288	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000322275	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000410047	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-3UTR	ENST00000545771	ENST00000354336		ChiTaRS3.1			D44954	KLHL7	chr7	23181797	-	CRKL	chr22	21306542	+
intron-intron	ENST00000434571	ENST00000434571		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000434571	ENST00000367579		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000434571	ENST00000282990		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-3UTR	ENST00000434571	ENST00000367580		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000434571	ENST00000438435		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000367579	ENST00000434571		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000367579	ENST00000367579		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000367579	ENST00000282990		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-3UTR	ENST00000367579	ENST00000367580		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000367579	ENST00000438435		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000282990	ENST00000434571		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000282990	ENST00000367579		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000282990	ENST00000282990		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-3UTR	ENST00000282990	ENST00000367580		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000282990	ENST00000438435		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
3UTR-intron	ENST00000367580	ENST00000434571		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
3UTR-intron	ENST00000367580	ENST00000367579		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
3UTR-intron	ENST00000367580	ENST00000282990		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
3UTR-3UTR	ENST00000367580	ENST00000367580		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
3UTR-intron	ENST00000367580	ENST00000438435		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000438435	ENST00000434571		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000438435	ENST00000367579		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000438435	ENST00000282990		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-3UTR	ENST00000438435	ENST00000367580		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000438435	ENST00000438435		ChiTaRS3.1			CD240364	MR1	chr1	181030940	+	MR1	chr1	181031051	-
intron-intron	ENST00000356918	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000356918	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000356918	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000356918	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000356918	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000356918	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000356918	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000356918	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510769	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510769	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510769	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510769	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510769	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510769	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510769	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510769	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000429253	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000429253	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000429253	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000429253	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000429253	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000429253	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000429253	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000429253	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510688	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510688	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510688	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510688	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510688	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510688	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000510688	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000510688	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000511262	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000511262	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000511262	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000511262	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000511262	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000511262	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000511262	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000511262	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000383366	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000383366	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000383366	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000383366	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000383366	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000383366	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000383366	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000383366	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000412440	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000412440	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000412440	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000412440	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000412440	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000412440	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000412440	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000412440	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000507910	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000507910	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000507910	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000507910	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000507910	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000507910	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000507910	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000507910	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000508196	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000508196	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000508196	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000508196	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000508196	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000508196	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000508196	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000508196	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000426022	ENST00000448521		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000426022	ENST00000456905		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000426022	ENST00000440166		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000426022	ENST00000452943		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000426022	ENST00000468694		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000426022	ENST00000494774		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000426022	ENST00000490734		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-3UTR	ENST00000426022	ENST00000497184		ChiTaRS3.1			AW835124	NEK11	chr3	130901108	+	DBNL	chr7	44100930	-
intron-intron	ENST00000512033	ENST00000512033		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000512033	ENST00000296679		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000512033	ENST00000414719		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000512033	ENST00000507029		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000296679	ENST00000512033		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000296679	ENST00000296679		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000296679	ENST00000414719		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000296679	ENST00000507029		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000414719	ENST00000512033		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000414719	ENST00000296679		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000414719	ENST00000414719		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000414719	ENST00000507029		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000507029	ENST00000512033		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000507029	ENST00000296679		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000507029	ENST00000414719		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000507029	ENST00000507029		ChiTaRS3.1			BE694334	WDR41	chr5	76759052	+	WDR41	chr5	76745585	+
intron-intron	ENST00000367328	ENST00000367328		ChiTaRS3.1			N64224	PLEKHG1	chr6	151056398	-	PLEKHG1	chr6	151057625	-
intron-intron	ENST00000367328	ENST00000358517		ChiTaRS3.1			N64224	PLEKHG1	chr6	151056398	-	PLEKHG1	chr6	151057625	-
intron-intron	ENST00000358517	ENST00000367328		ChiTaRS3.1			N64224	PLEKHG1	chr6	151056398	-	PLEKHG1	chr6	151057625	-
intron-intron	ENST00000358517	ENST00000358517		ChiTaRS3.1			N64224	PLEKHG1	chr6	151056398	-	PLEKHG1	chr6	151057625	-
intron-intron	ENST00000396825	ENST00000344157		ChiTaRS3.1			BE708434	FITM2	chr20	42935972	-	YTHDC1	chr4	33926	+
intron-intron	ENST00000396825	ENST00000355665		ChiTaRS3.1			BE708434	FITM2	chr20	42935972	-	YTHDC1	chr4	33926	+
intron-intron	ENST00000396825	ENST00000579690		ChiTaRS3.1			BE708434	FITM2	chr20	42935972	-	YTHDC1	chr4	33926	+
intron-intron	ENST00000396825	ENST00000552105		ChiTaRS3.1			BE708434	FITM2	chr20	42935972	-	YTHDC1	chr4	33926	+
intron-intron	ENST00000396825	ENST00000550485		ChiTaRS3.1			BE708434	FITM2	chr20	42935972	-	YTHDC1	chr4	33926	+
intron-3CDS	ENST00000375759	ENST00000375759		ChiTaRS3.1			BE164864	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000375759	ENST00000471538		ChiTaRS3.1			BE164864	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-3CDS	ENST00000471538	ENST00000375759		ChiTaRS3.1			BE164864	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-intron	ENST00000471538	ENST00000471538		ChiTaRS3.1			BE164864	SPEN	chr1	16264303	-	SPEN	chr1	16264131	+
intron-3CDS	ENST00000503771	ENST00000355481		ChiTaRS3.1			BE764194	TMEM158	chr3	45266302	+	RYR1	chr19	38997142	-
intron-3CDS	ENST00000503771	ENST00000360985		ChiTaRS3.1			BE764194	TMEM158	chr3	45266302	+	RYR1	chr19	38997142	-
intron-3CDS	ENST00000503771	ENST00000359596		ChiTaRS3.1			BE764194	TMEM158	chr3	45266302	+	RYR1	chr19	38997142	-
intron-intron	ENST00000299980	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000299980	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000299980	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000423132	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000423132	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000423132	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000433195	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000433195	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000433195	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000569748	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000569748	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000569748	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000393512	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000393512	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000393512	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000570297	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000570297	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000570297	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000564155	ENST00000265107		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000564155	ENST00000504564		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000564155	ENST00000510699		ChiTaRS3.1			AW853054	AP1G1	chr16	71840432	+	WDR70	chr5	37393027	+
intron-intron	ENST00000392825	ENST00000392825		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000392825	ENST00000409237		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000392825	ENST00000487047		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000409237	ENST00000392825		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000409237	ENST00000409237		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000409237	ENST00000487047		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000487047	ENST00000392825		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000487047	ENST00000409237		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-intron	ENST00000487047	ENST00000487047		ChiTaRS3.1			DW462544	GALNT13	chr2	155100733	+	GALNT13	chr2	155099822	+
intron-3CDS	ENST00000368868	ENST00000368868		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000368868	ENST00000447402		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000368868	ENST00000426705		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000368868	ENST00000435071		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-intron	ENST00000368868	ENST00000473693		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000447402	ENST00000368868		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000447402	ENST00000447402		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000447402	ENST00000426705		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000447402	ENST00000435071		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-intron	ENST00000447402	ENST00000473693		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000426705	ENST00000368868		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000426705	ENST00000447402		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000426705	ENST00000426705		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000426705	ENST00000435071		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-intron	ENST00000426705	ENST00000473693		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000435071	ENST00000368868		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000435071	ENST00000447402		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000435071	ENST00000426705		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000435071	ENST00000435071		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-intron	ENST00000435071	ENST00000473693		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000473693	ENST00000368868		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000473693	ENST00000447402		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000473693	ENST00000426705		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-3CDS	ENST00000473693	ENST00000435071		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
intron-intron	ENST00000473693	ENST00000473693		ChiTaRS3.1			BP289484	SELENBP1	chr1	151337167	-	SELENBP1	chr1	151338298	-
3UTR-3UTR	ENST00000328252	ENST00000328252		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
3UTR-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
3UTR-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-3UTR	ENST00000534838	ENST00000328252		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-3UTR	ENST00000483254	ENST00000328252		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			BF085994	PAPPA	chr9	119161457	-	PAPPA	chr9	119161274	+
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			CV423794	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-3CDS	ENST00000373025	ENST00000373025		ChiTaRS3.1			AW863384	PGC	chr6	41705502	+	PGC	chr6	41711133	-
intron-3CDS	ENST00000373025	ENST00000425343		ChiTaRS3.1			AW863384	PGC	chr6	41705502	+	PGC	chr6	41711133	-
intron-3CDS	ENST00000425343	ENST00000373025		ChiTaRS3.1			AW863384	PGC	chr6	41705502	+	PGC	chr6	41711133	-
intron-3CDS	ENST00000425343	ENST00000425343		ChiTaRS3.1			AW863384	PGC	chr6	41705502	+	PGC	chr6	41711133	-
intron-3CDS	ENST00000534358	ENST00000532219		ChiTaRS3.1			AY839734	KMT2A	chr11	118355991	+	ANKHD1-EIF4EBP3	chr5	139921756	-
intron-3CDS	ENST00000389506	ENST00000532219		ChiTaRS3.1			AY839734	KMT2A	chr11	118355991	+	ANKHD1-EIF4EBP3	chr5	139921756	-
intron-3CDS	ENST00000354520	ENST00000532219		ChiTaRS3.1			AY839734	KMT2A	chr11	118355991	+	ANKHD1-EIF4EBP3	chr5	139921756	-
intron-3CDS	ENST00000420751	ENST00000532219		ChiTaRS3.1			AY839734	KMT2A	chr11	118355991	+	ANKHD1-EIF4EBP3	chr5	139921756	-
Frame-shit	ENST00000181839	ENST00000181839		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
In-frame	ENST00000181839	ENST00000340829		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
5CDS-intron	ENST00000181839	ENST00000484589		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
Frame-shit	ENST00000340829	ENST00000181839		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
In-frame	ENST00000340829	ENST00000340829		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
5CDS-intron	ENST00000340829	ENST00000484589		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
intron-3CDS	ENST00000484589	ENST00000181839		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
intron-3CDS	ENST00000484589	ENST00000340829		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
intron-intron	ENST00000484589	ENST00000484589		ChiTaRS3.1			BE767414	CDK13	chr7	40127822	-	CDK13	chr7	40133997	+
intron-intron	ENST00000339594	ENST00000264433		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000339594	ENST00000379346		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000339594	ENST00000505445		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000404251	ENST00000264433		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000404251	ENST00000379346		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000404251	ENST00000505445		ChiTaRS3.1			BE771024	BAZ1B	chr7	72891663	+	FNIP2	chr4	159707199	+
intron-intron	ENST00000409792	ENST00000409792		ChiTaRS3.1			DW413064	SETD2	chr3	47074542	-	SETD2	chr3	47077038	-
intron-intron	ENST00000409792	ENST00000492397		ChiTaRS3.1			DW413064	SETD2	chr3	47074542	-	SETD2	chr3	47077038	-
intron-intron	ENST00000492397	ENST00000409792		ChiTaRS3.1			DW413064	SETD2	chr3	47074542	-	SETD2	chr3	47077038	-
intron-intron	ENST00000492397	ENST00000492397		ChiTaRS3.1			DW413064	SETD2	chr3	47074542	-	SETD2	chr3	47077038	-
3UTR-intron	ENST00000287218	ENST00000414318		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000287218	ENST00000253692		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000287218	ENST00000429383		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000287218	ENST00000446818		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000287218	ENST00000429924		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000373391	ENST00000414318		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000373391	ENST00000253692		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000373391	ENST00000429383		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000373391	ENST00000446818		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000373391	ENST00000429924		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000463847	ENST00000414318		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000463847	ENST00000253692		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000463847	ENST00000429383		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000463847	ENST00000446818		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
3UTR-intron	ENST00000463847	ENST00000429924		ChiTaRS3.1			BF378124	ZFAND3	chr6	38120202	+	TBC1D5	chr3	17630366	-
intron-3UTR	ENST00000219478	ENST00000245838		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000355725		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000491737		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000219478	ENST00000497887		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-3UTR	ENST00000591026	ENST00000245838		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000355725		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000491737		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000591026	ENST00000497887		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-3UTR	ENST00000545009	ENST00000245838		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000355725		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000491737		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
intron-intron	ENST00000545009	ENST00000497887		ChiTaRS3.1			BF156034	ZNF500	chr16	4802799	+	THOC2	chrX	122735010	-
Frame-shit	ENST00000217159	ENST00000222214		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000217159	ENST00000591470		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000217159	ENST00000457854		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000217159	ENST00000422947		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
5CDS-intron	ENST00000217159	ENST00000588242		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000370507	ENST00000222214		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000370507	ENST00000591470		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000370507	ENST00000457854		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
Frame-shit	ENST00000370507	ENST00000422947		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
5CDS-intron	ENST00000370507	ENST00000588242		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-3CDS	ENST00000470412	ENST00000222214		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-3CDS	ENST00000470412	ENST00000591470		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-3CDS	ENST00000470412	ENST00000457854		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-3CDS	ENST00000470412	ENST00000422947		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-intron	ENST00000470412	ENST00000588242		ChiTaRS3.1			BF761104	SLCO4A1	chr20	61300394	-	GCDH	chr19	13006899	-
3UTR-intron	ENST00000367658	ENST00000367749		ChiTaRS3.1			BI010334	HECA	chr6	139501673	+	FMO4	chr1	171308908	-
3UTR-intron	ENST00000367658	ENST00000462992		ChiTaRS3.1			BI010334	HECA	chr6	139501673	+	FMO4	chr1	171308908	-
intron-3UTR	ENST00000396402	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000396402	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000396402	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000396402	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000260433	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000260433	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000260433	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000260433	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000396404	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000396404	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000396404	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000396404	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000559878	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000559878	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000559878	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000559878	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000405913	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000405913	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000405913	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000405913	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000557858	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000557858	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000557858	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000557858	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000492852	ENST00000398970		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-3UTR	ENST00000492852	ENST00000300574		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000492852	ENST00000574295		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000492852	ENST00000572145		ChiTaRS3.1			BF085024	CYP19A1	chr15	51503011	+	CRK	chr17	1325171	-
intron-intron	ENST00000306833	ENST00000223368		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000306833	ENST00000411832		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000306833	ENST00000482231		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000223368		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000411832		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000389082	ENST00000482231		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000223368		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000411832		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000536562	ENST00000482231		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000223368		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000411832		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000354285	ENST00000482231		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000223368		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000411832		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-intron	ENST00000545147	ENST00000482231		ChiTaRS3.1			DA376084	DENND5B	chr12	31602965	-	BCL7B	chr7	72954898	-
intron-3UTR	ENST00000433360	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000433360	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433360	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433360	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433360	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433360	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433360	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000340694	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000340694	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000340694	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000340694	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000340694	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000340694	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000340694	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000424654	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000424654	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000424654	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000424654	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000424654	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000424654	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000424654	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000433881	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000433881	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433881	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433881	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433881	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433881	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000433881	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000289495	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000289495	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000289495	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000289495	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000289495	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000289495	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000289495	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000456331	ENST00000367182		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-3UTR	ENST00000456331	ENST00000463049		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000456331	ENST00000507825		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000456331	ENST00000454264		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000456331	ENST00000367183		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000456331	ENST00000367180		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
intron-intron	ENST00000456331	ENST00000391947		ChiTaRS3.1			DA416644	PPP1R9A	chr7	94789006	+	MDM4	chr1	204522210	+
5CDS-5UTR	ENST00000157812	ENST00000157812		ChiTaRS3.1			CV361424	PSMC4	chr19	40485834	-	PSMC4	chr19	40477072	+
5CDS-5UTR	ENST00000157812	ENST00000455878		ChiTaRS3.1			CV361424	PSMC4	chr19	40485834	-	PSMC4	chr19	40477072	+
5CDS-5UTR	ENST00000455878	ENST00000157812		ChiTaRS3.1			CV361424	PSMC4	chr19	40485834	-	PSMC4	chr19	40477072	+
5CDS-5UTR	ENST00000455878	ENST00000455878		ChiTaRS3.1			CV361424	PSMC4	chr19	40485834	-	PSMC4	chr19	40477072	+
Frame-shit	ENST00000394332	ENST00000413644		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394332	ENST00000368961		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394332	ENST00000310786		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394332	ENST00000275080		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394332	ENST00000324953		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000394332	ENST00000512821		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000394332	ENST00000504373		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-5UTR	ENST00000394332	ENST00000506649		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000394333	ENST00000413644		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000394333	ENST00000368961		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394333	ENST00000310786		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394333	ENST00000275080		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000394333	ENST00000324953		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000394333	ENST00000512821		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000394333	ENST00000504373		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-5UTR	ENST00000394333	ENST00000506649		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000479035	ENST00000413644		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000479035	ENST00000368961		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000479035	ENST00000310786		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000479035	ENST00000275080		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000479035	ENST00000324953		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000479035	ENST00000512821		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000479035	ENST00000504373		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-5UTR	ENST00000479035	ENST00000506649		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-3CDS	ENST00000245857	ENST00000413644		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-3CDS	ENST00000245857	ENST00000368961		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-3CDS	ENST00000245857	ENST00000310786		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-3CDS	ENST00000245857	ENST00000275080		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-3CDS	ENST00000245857	ENST00000324953		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-intron	ENST00000245857	ENST00000512821		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-intron	ENST00000245857	ENST00000504373		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-5UTR	ENST00000245857	ENST00000506649		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000577407	ENST00000413644		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
In-frame	ENST00000577407	ENST00000368961		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000577407	ENST00000310786		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000577407	ENST00000275080		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
Frame-shit	ENST00000577407	ENST00000324953		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000577407	ENST00000512821		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-intron	ENST00000577407	ENST00000504373		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5CDS-5UTR	ENST00000577407	ENST00000506649		ChiTaRS3.1			DA438824	RPL23	chr17	37009278	-	CD164	chr6	109690218	-
5UTR-intron	ENST00000442092	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000442092	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000442092	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000442092	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5CDS-intron	ENST00000266022	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5CDS-intron	ENST00000266022	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5CDS-intron	ENST00000266022	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5CDS-intron	ENST00000266022	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000443081	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000443081	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000443081	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000443081	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000539992	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000539992	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000539992	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000539992	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
3UTR-intron	ENST00000441115	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
3UTR-intron	ENST00000441115	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
3UTR-intron	ENST00000441115	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
3UTR-intron	ENST00000441115	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000422955	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000422955	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000422955	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
5UTR-intron	ENST00000422955	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
intron-intron	ENST00000421682	ENST00000305877		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
intron-intron	ENST00000421682	ENST00000359540		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
intron-intron	ENST00000421682	ENST00000398512		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
intron-intron	ENST00000421682	ENST00000436990		ChiTaRS3.1			CN425514	RBM6	chr3	50000120	+	BCR	chr22	23530035	+
intron-3CDS	ENST00000212355	ENST00000553781		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000212355	ENST00000557008		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000370399	ENST00000553781		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000370399	ENST00000557008		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000525962	ENST00000553781		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000525962	ENST00000557008		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000468996	ENST00000553781		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
intron-3CDS	ENST00000468996	ENST00000557008		ChiTaRS3.1			BX099284	TGFBR3	chr1	92174372	-	BCL2L2-PABPN1	chr14	23793477	+
5UTR-5UTR	ENST00000394156	ENST00000332776		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000394156	ENST00000574788		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000394156	ENST00000304328		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000394156	ENST00000250066		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000394156	ENST00000572429		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000268603	ENST00000332776		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000268603	ENST00000574788		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000268603	ENST00000304328		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000268603	ENST00000250066		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000268603	ENST00000572429		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000566827	ENST00000332776		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000566827	ENST00000574788		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000566827	ENST00000304328		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000566827	ENST00000250066		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000566827	ENST00000572429		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000569624	ENST00000332776		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000569624	ENST00000574788		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000569624	ENST00000304328		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-5UTR	ENST00000569624	ENST00000250066		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
5UTR-intron	ENST00000569624	ENST00000572429		ChiTaRS3.1			AY380224	CDH11	chr16	65087706	-	USP6	chr17	5033660	+
intron-3CDS	ENST00000375068	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375068	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000375068	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375053	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000375053	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000347546	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000347546	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375062	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000375062	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000218439	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000218439	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375058	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000375058	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000375060	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000375060	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000396224	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000396224	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000375068		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000375053		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000347546		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000375062		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000218439		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000375058		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000375060		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-3CDS	ENST00000497484	ENST00000396224		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000497484	ENST00000497484		ChiTaRS3.1			DB569084	MAGED2	chrX	54841216	+	MAGED2	chrX	54838588	+
intron-intron	ENST00000459937	ENST00000459937		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000459937	ENST00000424142		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000459937	ENST00000393114		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000459937	ENST00000430372		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000459937	ENST00000483029		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000424142	ENST00000459937		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000424142	ENST00000424142		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000424142	ENST00000393114		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000424142	ENST00000430372		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000424142	ENST00000483029		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000393114	ENST00000459937		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000393114	ENST00000424142		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000393114	ENST00000393114		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000393114	ENST00000430372		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000393114	ENST00000483029		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000430372	ENST00000459937		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000430372	ENST00000424142		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000430372	ENST00000393114		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000430372	ENST00000430372		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000430372	ENST00000483029		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000483029	ENST00000459937		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000483029	ENST00000424142		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000483029	ENST00000393114		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000483029	ENST00000430372		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
intron-intron	ENST00000483029	ENST00000483029		ChiTaRS3.1			BI837834	C7orf49	chr7	134850048	-	C7orf49	chr7	134832825	+
3UTR-3UTR	ENST00000565677	ENST00000565677		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-3UTR	ENST00000565677	ENST00000219548		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-intron	ENST00000565677	ENST00000564370		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-intron	ENST00000565677	ENST00000566181		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-3UTR	ENST00000219548	ENST00000565677		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-3UTR	ENST00000219548	ENST00000219548		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-intron	ENST00000219548	ENST00000564370		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
3UTR-intron	ENST00000219548	ENST00000566181		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-3UTR	ENST00000564370	ENST00000565677		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-3UTR	ENST00000564370	ENST00000219548		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-intron	ENST00000564370	ENST00000564370		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-intron	ENST00000564370	ENST00000566181		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-3UTR	ENST00000566181	ENST00000565677		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-3UTR	ENST00000566181	ENST00000219548		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-intron	ENST00000566181	ENST00000564370		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-intron	ENST00000566181	ENST00000566181		ChiTaRS3.1			BE327094	STUB1	chr16	732536	-	STUB1	chr16	732584	+
intron-intron	ENST00000331134	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000331134	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000331134	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000331134	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000331134	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000331134	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000374747	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000539314	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000572760	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000573876	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000403729		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000482406		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000404191		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000346652		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000307333		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-intron	ENST00000574344	ENST00000295465		ChiTaRS3.1			BI020354	NPLOC4	chr17	79563153	-	ANTXR2	chr4	80885507	+
intron-3CDS	ENST00000239690	ENST00000239690		ChiTaRS3.1			DW451734	NUDCD1	chr8	110253228	-	NUDCD1	chr8	110255406	-
intron-3CDS	ENST00000239690	ENST00000427660		ChiTaRS3.1			DW451734	NUDCD1	chr8	110253228	-	NUDCD1	chr8	110255406	-
intron-3CDS	ENST00000427660	ENST00000239690		ChiTaRS3.1			DW451734	NUDCD1	chr8	110253228	-	NUDCD1	chr8	110255406	-
intron-3CDS	ENST00000427660	ENST00000427660		ChiTaRS3.1			DW451734	NUDCD1	chr8	110253228	-	NUDCD1	chr8	110255406	-
3UTR-3UTR	ENST00000379440	ENST00000379440		ChiTaRS3.1			CA312794	PRNP	chr20	4682107	-	PRNP	chr20	4682029	+
3UTR-3UTR	ENST00000379440	ENST00000430350		ChiTaRS3.1			CA312794	PRNP	chr20	4682107	-	PRNP	chr20	4682029	+
3UTR-3UTR	ENST00000430350	ENST00000379440		ChiTaRS3.1			CA312794	PRNP	chr20	4682107	-	PRNP	chr20	4682029	+
3UTR-3UTR	ENST00000430350	ENST00000430350		ChiTaRS3.1			CA312794	PRNP	chr20	4682107	-	PRNP	chr20	4682029	+
In-frame	ENST00000232978	ENST00000232978		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
5CDS-intron	ENST00000232978	ENST00000460910		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
5CDS-intron	ENST00000232978	ENST00000442970		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-3CDS	ENST00000460910	ENST00000232978		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-intron	ENST00000460910	ENST00000460910		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-intron	ENST00000460910	ENST00000442970		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-3CDS	ENST00000442970	ENST00000232978		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-intron	ENST00000442970	ENST00000460910		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
intron-intron	ENST00000442970	ENST00000442970		ChiTaRS3.1			BF360014	NKTR	chr3	42680850	+	NKTR	chr3	42681020	-
Frame-shit	ENST00000262097	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000262097	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000262097	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000262097	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000262097	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000262097	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000381733	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000381733	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000381733	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000381733	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000381733	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000381733	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000417108	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000417108	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000417108	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000417108	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000417108	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000417108	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000520781	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000520781	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000520781	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000520781	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000520781	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000520781	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000314146	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000314146	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
Frame-shit	ENST00000314146	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000314146	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000314146	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5CDS-intron	ENST00000314146	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000520051	ENST00000325083		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000520051	ENST00000519253		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-3CDS	ENST00000520051	ENST00000524226		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000520051	ENST00000518537		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000520051	ENST00000518936		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
5UTR-intron	ENST00000520051	ENST00000327578		ChiTaRS3.1			DB239554	ASAH1	chr8	17933049	-	PCM1	chr8	17817523	+
intron-3UTR	ENST00000395938	ENST00000395938		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000395938	ENST00000312280		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395938	ENST00000494511		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395938	ENST00000395936		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395938	ENST00000426385		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000312280	ENST00000395938		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000312280	ENST00000312280		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000312280	ENST00000494511		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000312280	ENST00000395936		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000312280	ENST00000426385		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000494511	ENST00000395938		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000494511	ENST00000312280		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000494511	ENST00000494511		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000494511	ENST00000395936		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000494511	ENST00000426385		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000395936	ENST00000395938		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000395936	ENST00000312280		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395936	ENST00000494511		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395936	ENST00000395936		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000395936	ENST00000426385		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000426385	ENST00000395938		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3UTR	ENST00000426385	ENST00000312280		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000426385	ENST00000494511		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000426385	ENST00000395936		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-intron	ENST00000426385	ENST00000426385		ChiTaRS3.1			BX381404	PMP22	chr17	15133528	+	PMP22	chr17	15133578	-
intron-3CDS	ENST00000359541	ENST00000359541		ChiTaRS3.1			BF736664	GTF3C2	chr2	27552391	+	GTF3C2	chr2	27552290	-
intron-3CDS	ENST00000359541	ENST00000264720		ChiTaRS3.1			BF736664	GTF3C2	chr2	27552391	+	GTF3C2	chr2	27552290	-
intron-3CDS	ENST00000264720	ENST00000359541		ChiTaRS3.1			BF736664	GTF3C2	chr2	27552391	+	GTF3C2	chr2	27552290	-
intron-3CDS	ENST00000264720	ENST00000264720		ChiTaRS3.1			BF736664	GTF3C2	chr2	27552391	+	GTF3C2	chr2	27552290	-
intron-intron	ENST00000374866	ENST00000381196		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000360074		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000537002		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000397617		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000358503		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000397611		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000355233		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000356435		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000540109		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000486161		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000397606		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000463477		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000374866	ENST00000471274		ChiTaRS3.1			BC086874	COL5A2	chr2	189898504	-	PTPRD	chr9	10078514	+
intron-intron	ENST00000011619	ENST00000011619		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000011619	ENST00000469916		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000011619	ENST00000539980		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000469916	ENST00000011619		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000469916	ENST00000469916		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000469916	ENST00000539980		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000539980	ENST00000011619		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000539980	ENST00000469916		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000539980	ENST00000539980		ChiTaRS3.1			BE835314	RANBP9	chr6	13632687	+	RANBP9	chr6	13632461	-
intron-intron	ENST00000474034	ENST00000474034		ChiTaRS3.1			U79264	ZIC1	chr3	147127415	-	ZIC1	chr3	147127612	-
intron-5UTR	ENST00000474034	ENST00000282928		ChiTaRS3.1			U79264	ZIC1	chr3	147127415	-	ZIC1	chr3	147127612	-
5UTR-intron	ENST00000282928	ENST00000474034		ChiTaRS3.1			U79264	ZIC1	chr3	147127415	-	ZIC1	chr3	147127612	-
5UTR-5UTR	ENST00000282928	ENST00000282928		ChiTaRS3.1			U79264	ZIC1	chr3	147127415	-	ZIC1	chr3	147127612	-
intron-intron	ENST00000377636	ENST00000377636		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377636	ENST00000431480		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377636	ENST00000425511		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377636	ENST00000377625		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377636	ENST00000478591		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000431480	ENST00000377636		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000431480	ENST00000431480		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000431480	ENST00000425511		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000431480	ENST00000377625		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000431480	ENST00000478591		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000425511	ENST00000377636		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000425511	ENST00000431480		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000425511	ENST00000425511		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000425511	ENST00000377625		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000425511	ENST00000478591		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377625	ENST00000377636		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377625	ENST00000431480		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377625	ENST00000425511		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377625	ENST00000377625		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000377625	ENST00000478591		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000478591	ENST00000377636		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000478591	ENST00000431480		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000478591	ENST00000425511		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000478591	ENST00000377625		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-intron	ENST00000478591	ENST00000478591		ChiTaRS3.1			AW992944	TBC1D4	chr13	75971279	+	TBC1D4	chr13	75971822	-
intron-3CDS	ENST00000319283	ENST00000319283		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000319283	ENST00000422110		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000319283	ENST00000479927		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-5UTR	ENST00000319283	ENST00000476334		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000422110	ENST00000319283		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000422110	ENST00000422110		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000422110	ENST00000479927		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-5UTR	ENST00000422110	ENST00000476334		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000479927	ENST00000319283		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000479927	ENST00000422110		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000479927	ENST00000479927		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-5UTR	ENST00000479927	ENST00000476334		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000476334	ENST00000319283		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000476334	ENST00000422110		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-3CDS	ENST00000476334	ENST00000479927		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
intron-5UTR	ENST00000476334	ENST00000476334		ChiTaRS3.1			BP260684	GORASP1	chr3	39139180	-	GORASP1	chr3	39140254	-
Frame-shit	ENST00000402291	ENST00000402291		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000356719		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000295031		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000402291	ENST00000453873		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000402291	ENST00000482513		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000402291		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000356719		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000295031		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000356719	ENST00000453873		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000356719	ENST00000482513		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000402291		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000356719		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000295031		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000295031	ENST00000453873		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000295031	ENST00000482513		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000402291		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000356719		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000295031		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
Frame-shit	ENST00000453873	ENST00000453873		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
5CDS-intron	ENST00000453873	ENST00000482513		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000402291		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000356719		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000295031		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-3CDS	ENST00000482513	ENST00000453873		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000482513	ENST00000482513		ChiTaRS3.1			BE138714	KIAA1841	chr2	61345252	+	KIAA1841	chr2	61343114	+
intron-intron	ENST00000286827	ENST00000358691		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000286827	ENST00000580168		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000286827	ENST00000580662		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000541036	ENST00000358691		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000541036	ENST00000580168		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000541036	ENST00000580662		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000469412	ENST00000358691		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000469412	ENST00000580168		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000469412	ENST00000580662		ChiTaRS3.1			L44394	TIAM1	chr21	32850277	+	HELZ	chr17	65080033	+
intron-intron	ENST00000384215	ENST00000384215		ChiTaRS3.1			CF127244	SNHG15	chr7	45022678	+	SNHG15	chr7	45023470	-
Frame-shit	ENST00000221455	ENST00000221455		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000221455	ENST00000391953		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000221455	ENST00000544944		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000391953	ENST00000221455		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000391953	ENST00000391953		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000391953	ENST00000544944		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000544944	ENST00000221455		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000544944	ENST00000391953		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
Frame-shit	ENST00000544944	ENST00000544944		ChiTaRS3.1			CA450264	CLASRP	chr19	45572362	-	CLASRP	chr19	45570827	+
intron-3UTR	ENST00000222823	ENST00000222823		ChiTaRS3.1			CB163924	NOD1	chr7	30469118	+	NOD1	chr7	30464202	-
intron-intron	ENST00000222823	ENST00000423334		ChiTaRS3.1			CB163924	NOD1	chr7	30469118	+	NOD1	chr7	30464202	-
intron-3UTR	ENST00000423334	ENST00000222823		ChiTaRS3.1			CB163924	NOD1	chr7	30469118	+	NOD1	chr7	30464202	-
intron-intron	ENST00000423334	ENST00000423334		ChiTaRS3.1			CB163924	NOD1	chr7	30469118	+	NOD1	chr7	30464202	-
intron-3UTR	ENST00000335508	ENST00000490414		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-intron	ENST00000335508	ENST00000367992		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000335508	ENST00000289902		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000462613	ENST00000490414		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-intron	ENST00000462613	ENST00000367992		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000462613	ENST00000289902		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000409915	ENST00000490414		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-intron	ENST00000409915	ENST00000367992		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000409915	ENST00000289902		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000414963	ENST00000490414		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-intron	ENST00000414963	ENST00000367992		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000414963	ENST00000289902		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000487698	ENST00000490414		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-intron	ENST00000487698	ENST00000367992		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3UTR	ENST00000487698	ENST00000289902		ChiTaRS3.1			BI014364	SF3B1	chr2	198283672	+	FCER1G	chr1	161188738	+
intron-3CDS	ENST00000338368	ENST00000338368		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-3CDS	ENST00000338368	ENST00000314191		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-5UTR	ENST00000338368	ENST00000523565		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-3CDS	ENST00000314191	ENST00000338368		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-3CDS	ENST00000314191	ENST00000314191		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-5UTR	ENST00000314191	ENST00000523565		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-3CDS	ENST00000523565	ENST00000338368		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-3CDS	ENST00000523565	ENST00000314191		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
intron-5UTR	ENST00000523565	ENST00000523565		ChiTaRS3.1			W28344	PRKDC	chr8	48777304	+	PRKDC	chr8	48772204	-
5CDS-intron	ENST00000543378	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000543378	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000543378	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000543378	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000327564	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000327564	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000327564	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000327564	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000394713	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000394713	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000394713	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000394713	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000584368	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000584368	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000584368	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000584368	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000341671	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000341671	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000341671	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
5CDS-intron	ENST00000341671	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
intron-intron	ENST00000581786	ENST00000400337		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
intron-intron	ENST00000581786	ENST00000355480		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
intron-intron	ENST00000581786	ENST00000359759		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
intron-intron	ENST00000581786	ENST00000459895		ChiTaRS3.1			BF366134	LRRC37B	chr17	30376167	+	COL18A1	chr21	46867770	-
intron-intron	ENST00000360526	ENST00000373255		ChiTaRS3.1			BP241894	CES1	chr16	55837485	-	H2AFY2	chr10	71851077	+
intron-intron	ENST00000422046	ENST00000373255		ChiTaRS3.1			BP241894	CES1	chr16	55837485	-	H2AFY2	chr10	71851077	+
intron-intron	ENST00000361503	ENST00000373255		ChiTaRS3.1			BP241894	CES1	chr16	55837485	-	H2AFY2	chr10	71851077	+
intron-intron	ENST00000566555	ENST00000373255		ChiTaRS3.1			BP241894	CES1	chr16	55837485	-	H2AFY2	chr10	71851077	+
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BE932674	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000406610	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000406610	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000406610	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000406610	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000406610	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000462231	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000462231	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000462231	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000462231	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000462231	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000349953	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000349953	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000349953	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000349953	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000349953	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000358768	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000358768	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000358768	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000358768	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000358768	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000351153	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000351153	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000351153	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000351153	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000351153	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000488622	ENST00000455502		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000488622	ENST00000248572		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000488622	ENST00000429473		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000488622	ENST00000430875		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000488622	ENST00000428834		ChiTaRS3.1			BM983864	PARD3B	chr2	205874391	-	GNGT1	chr7	93515859	+
intron-intron	ENST00000467803	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000467803	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000467803	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000447325	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000447325	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000447325	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000321256	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000321256	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000321256	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000427641	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000427641	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000427641	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000452404	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000452404	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000452404	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000422610	ENST00000378673		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000422610	ENST00000296875		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
intron-intron	ENST00000422610	ENST00000464378		ChiTaRS3.1			F01144	NCBP2	chr3	196662515	+	GDF9	chr5	132202339	+
In-frame	ENST00000244230	ENST00000244230		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
In-frame	ENST00000244230	ENST00000498451		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
5CDS-intron	ENST00000244230	ENST00000468427		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000498451	ENST00000244230		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000498451	ENST00000498451		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-intron	ENST00000498451	ENST00000468427		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000468427	ENST00000244230		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-3CDS	ENST00000468427	ENST00000498451		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
intron-intron	ENST00000468427	ENST00000468427		ChiTaRS3.1			CA945054	MPHOSPH10	chr2	71375173	-	MPHOSPH10	chr2	71365744	+
In-frame	ENST00000306917	ENST00000306917		ChiTaRS3.1			CA502844	FEM1B	chr15	68583473	-	FEM1B	chr15	68583302	+
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582444	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
3UTR-3UTR	ENST00000431877	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000431877	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000431877	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000431877	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000431877	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000431877	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000320370	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000320370	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000320370	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000320370	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000320370	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000320370	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409001	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409001	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409001	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000409001	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409001	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000409001	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000428267	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000428267	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000428267	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-intron	ENST00000428267	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000428267	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-intron	ENST00000428267	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409136	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409136	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409136	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000409136	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-3UTR	ENST00000409136	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
3UTR-intron	ENST00000409136	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000467172	ENST00000431877		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000467172	ENST00000320370		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000467172	ENST00000409001		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-intron	ENST00000467172	ENST00000428267		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3UTR	ENST00000467172	ENST00000409136		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-intron	ENST00000467172	ENST00000467172		ChiTaRS3.1			CN353414	SSFA2	chr2	182795075	-	SSFA2	chr2	182794675	+
intron-3CDS	ENST00000303635	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000303635	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000303635	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000303635	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000303635	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000439411	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000439411	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000439411	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000439411	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000439411	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476163	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476163	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476163	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476163	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000476163	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000557126	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000557126	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000557126	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000557126	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000557126	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000473578	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000473578	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000473578	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000473578	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000473578	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000467404	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000467404	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000467404	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000467404	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000467404	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476864	ENST00000354989		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476864	ENST00000360031		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476864	ENST00000376652		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3CDS	ENST00000476864	ENST00000433259		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-intron	ENST00000476864	ENST00000485936		ChiTaRS3.1			DB118034	CAMTA1	chr1	7538471	-	ENTPD6	chr20	25195538	+
intron-3UTR	ENST00000370203	ENST00000602624		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3UTR	ENST00000370203	ENST00000375048		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3UTR	ENST00000370203	ENST00000415136		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-intron	ENST00000370203	ENST00000477229		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3UTR	ENST00000463375	ENST00000602624		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3UTR	ENST00000463375	ENST00000375048		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3UTR	ENST00000463375	ENST00000415136		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-intron	ENST00000463375	ENST00000477229		ChiTaRS3.1			BF306134	TMEM56	chr1	95639966	+	DDOST	chr1	20978617	+
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB147414	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-intron	ENST00000440491	ENST00000604938		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401010		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000339388		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000369323		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000605317		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000479926		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000604894		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000440491	ENST00000401009		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604938		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401010		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000339388		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000369323		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000605317		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000479926		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000604894		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000338347	ENST00000401009		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604938		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401010		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000339388		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000369323		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000605317		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000479926		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000604894		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000468645	ENST00000401009		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604938		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401010		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000339388		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000369323		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000605317		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000479926		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000604894		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
intron-intron	ENST00000281815	ENST00000401009		ChiTaRS3.1			BC110294	NBPF9	chr1	144676873	-	NBPF11	chr1	147917467	+
Frame-shit	ENST00000301327	ENST00000301327		ChiTaRS3.1			BI821314	MFSD3	chr8	145735761	-	MFSD3	chr8	145735790	+
intron-3CDS	ENST00000399786	ENST00000286398		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399786	ENST00000374793		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399786	ENST00000303219		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399786	ENST00000374787		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000339944	ENST00000286398		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000339944	ENST00000374793		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000339944	ENST00000303219		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000339944	ENST00000374787		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000497833	ENST00000286398		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000497833	ENST00000374793		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000497833	ENST00000303219		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000497833	ENST00000374787		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399784	ENST00000286398		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399784	ENST00000374793		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399784	ENST00000303219		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000399784	ENST00000374787		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000303645	ENST00000286398		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000303645	ENST00000374793		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000303645	ENST00000303219		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-3CDS	ENST00000303645	ENST00000374787		ChiTaRS3.1			BE046964	MRAP	chr21	33686527	+	SMC2	chr9	106885457	-
intron-intron	ENST00000256429	ENST00000256429		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000256429	ENST00000579025		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000256429	ENST00000398398		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000256429	ENST00000583046		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000579025	ENST00000256429		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000579025	ENST00000579025		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000579025	ENST00000398398		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000579025	ENST00000583046		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000398398	ENST00000256429		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000398398	ENST00000579025		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000398398	ENST00000398398		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000398398	ENST00000583046		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000583046	ENST00000256429		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000583046	ENST00000579025		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000583046	ENST00000398398		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
intron-intron	ENST00000583046	ENST00000583046		ChiTaRS3.1			DW465894	MBD2	chr18	51739906	-	MBD2	chr18	51740533	-
In-frame	ENST00000328771	ENST00000328771		ChiTaRS3.1			BM929854	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
5CDS-3UTR	ENST00000328771	ENST00000471451		ChiTaRS3.1			BM929854	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
intron-3CDS	ENST00000471451	ENST00000328771		ChiTaRS3.1			BM929854	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
intron-3UTR	ENST00000471451	ENST00000471451		ChiTaRS3.1			BM929854	DHX34	chr19	47884192	+	DHX34	chr19	47863271	+
3UTR-intron	ENST00000431231	ENST00000376851		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000310157		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000391808		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000456750		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000376853		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000594641		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000431231	ENST00000424910		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000376851		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000310157		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000391808		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000456750		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000376853		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000594641		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000437668	ENST00000424910		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000376851		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000310157		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000391808		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000456750		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000376853		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000594641		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
intron-intron	ENST00000582409	ENST00000424910		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000376851		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000310157		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000391808		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000456750		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000376853		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000594641		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
3UTR-intron	ENST00000443378	ENST00000424910		ChiTaRS3.1			BE181544	ARHGAP23	chr17	36668229	-	KLK6	chr19	51465002	+
5UTR-intron	ENST00000584667	ENST00000536005		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000299694		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000561796		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000564819		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000563075		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000536005		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000299694		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000561796		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000564819		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000563075		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000536005		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000299694		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000561796		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000564819		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000563075		ChiTaRS3.1			CD624674	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000547956	ENST00000547956		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000547956	ENST00000549260		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000547956	ENST00000303694		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000547956	ENST00000546689		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000547956	ENST00000550711		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000549260	ENST00000547956		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000549260	ENST00000549260		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000549260	ENST00000303694		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000549260	ENST00000546689		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000549260	ENST00000550711		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000303694	ENST00000547956		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000303694	ENST00000549260		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000303694	ENST00000303694		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000303694	ENST00000546689		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000303694	ENST00000550711		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000546689	ENST00000547956		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000546689	ENST00000549260		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000546689	ENST00000303694		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000546689	ENST00000546689		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000546689	ENST00000550711		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000550711	ENST00000547956		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000550711	ENST00000549260		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000550711	ENST00000303694		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000550711	ENST00000546689		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
intron-intron	ENST00000550711	ENST00000550711		ChiTaRS3.1			BI062214	CHST11	chr12	104867702	-	CHST11	chr12	104866579	+
3UTR-3UTR	ENST00000429989	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
3UTR-3UTR	ENST00000429989	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
3UTR-3UTR	ENST00000429989	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000481124	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000481124	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000481124	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
3UTR-3UTR	ENST00000372164	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
3UTR-3UTR	ENST00000372164	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
3UTR-3UTR	ENST00000372164	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372158	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372158	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372158	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000341863	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000341863	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000341863	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372156	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372156	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000372156	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000265450	ENST00000248975		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000265450	ENST00000397492		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-3UTR	ENST00000265450	ENST00000471374		ChiTaRS3.1			AW903844	TSPAN14	chr10	82279577	-	YWHAH	chr22	32352891	-
intron-intron	ENST00000221561	ENST00000539857		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000221561	ENST00000579016		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000221561	ENST00000584568		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000327141	ENST00000539857		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000327141	ENST00000579016		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000327141	ENST00000584568		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000592330	ENST00000539857		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000592330	ENST00000579016		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000592330	ENST00000584568		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000586839	ENST00000539857		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000586839	ENST00000579016		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-intron	ENST00000586839	ENST00000584568		ChiTaRS3.1			AW872824	AES	chr19	3053234	+	ENGASE	chr17	77082111	-
intron-3CDS	ENST00000370873	ENST00000370873		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370873	ENST00000484488		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370873	ENST00000370861		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-intron	ENST00000370873	ENST00000370858		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-3CDS	ENST00000484488	ENST00000370873		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000484488	ENST00000484488		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000484488	ENST00000370861		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-intron	ENST00000484488	ENST00000370858		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-3CDS	ENST00000370861	ENST00000370873		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370861	ENST00000484488		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370861	ENST00000370861		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-intron	ENST00000370861	ENST00000370858		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-3CDS	ENST00000370858	ENST00000370873		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370858	ENST00000484488		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-5UTR	ENST00000370858	ENST00000370861		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
intron-intron	ENST00000370858	ENST00000370858		ChiTaRS3.1			BF237904	PSMA7	chr20	60714879	+	PSMA7	chr20	60714202	-
Frame-shit	ENST00000518857	ENST00000518857		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518857	ENST00000395862		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518857	ENST00000521514		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518857	ENST00000518738		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000395862	ENST00000518857		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000395862	ENST00000395862		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000395862	ENST00000521514		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000395862	ENST00000518738		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000521514	ENST00000518857		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000521514	ENST00000395862		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000521514	ENST00000521514		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000521514	ENST00000518738		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518738	ENST00000518857		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518738	ENST00000395862		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518738	ENST00000521514		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
Frame-shit	ENST00000518738	ENST00000518738		ChiTaRS3.1			BF350724	ATP6V1C1	chr8	104068158	+	ATP6V1C1	chr8	104064984	-
intron-intron	ENST00000311637	ENST00000366600		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000311637	ENST00000313984		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000311637	ENST00000494378		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000338821	ENST00000366600		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000338821	ENST00000313984		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000338821	ENST00000494378		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000402822	ENST00000366600		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000402822	ENST00000313984		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000402822	ENST00000494378		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000477492	ENST00000366600		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000477492	ENST00000313984		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000477492	ENST00000494378		ChiTaRS3.1			BF083064	ATP9A	chr20	50216561	+	B3GALNT2	chr1	235650711	-
intron-intron	ENST00000221566	ENST00000381898		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000221566	ENST00000333082		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000221566	ENST00000246015		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000221566	ENST00000335877		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000221566	ENST00000438768		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000221566	ENST00000484891		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000381898		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000333082		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000246015		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000335877		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000438768		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000586711	ENST00000484891		ChiTaRS3.1			BP249774	SGTA	chr19	2767162	-	PSMF1	chr20	1145342	+
intron-intron	ENST00000395996	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000395996	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000395996	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000395996	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000358544	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000358544	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000358544	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000358544	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000357162	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000357162	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000357162	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000357162	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000355155	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000355155	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000355155	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000355155	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000441350	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000441350	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000441350	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000441350	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000521932	ENST00000371322		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000521932	ENST00000336592		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000521932	ENST00000404115		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
intron-intron	ENST00000521932	ENST00000486604		ChiTaRS3.1			DA405414	VPS13B	chr8	100849280	+	CUL4B	chrX	119694608	-
3UTR-3UTR	ENST00000424011	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000424011	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000424011	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000424011	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000424011	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000424011	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000360086	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000360086	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000360086	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000360086	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000360086	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000360086	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000562707	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000562707	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000562707	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000562707	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000562707	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000562707	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000361909	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000361909	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000361909	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000361909	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000361909	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000361909	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000460097	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000460097	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000460097	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000460097	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000460097	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000460097	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565666	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565666	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565666	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565666	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565666	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565666	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000567572	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000567572	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000567572	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000567572	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000567572	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000567572	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000564060	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000564060	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000564060	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-3UTR	ENST00000564060	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000564060	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
3UTR-intron	ENST00000564060	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565922	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565922	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565922	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565922	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565922	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565922	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565003	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565003	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565003	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000565003	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565003	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000565003	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000568477	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000568477	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000568477	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000568477	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000568477	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000568477	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000566121	ENST00000294785		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000566121	ENST00000368063		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000566121	ENST00000535857		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-3UTR	ENST00000566121	ENST00000392212		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000566121	ENST00000459963		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000566121	ENST00000368065		ChiTaRS3.1			CN403994	CMTM3	chr16	66646769	+	NCSTN	chr1	160328601	+
intron-intron	ENST00000358746	ENST00000538486		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000397323		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000320203		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000287771		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000339877		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000517860		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000520161		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000519647		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000520191		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000358746	ENST00000520916		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000538486		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000397323		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000320203		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000287771		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000339877		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000517860		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000520161		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000519647		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000520191		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000515176	ENST00000520916		ChiTaRS3.1			DB308334	TTC37	chr5	94799929	+	RBPMS	chr8	30326852	-
intron-intron	ENST00000375400	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375400	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000375398	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000355867	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000535393	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000460007	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375400		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000375398		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000355867		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000535393		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000460007		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
intron-intron	ENST00000538146	ENST00000538146		ChiTaRS3.1			BF356804	SVIL	chr10	29980486	-	SVIL	chr10	29990842	-
5CDS-3UTR	ENST00000223273	ENST00000223273		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000448268		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000432096		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
5CDS-intron	ENST00000223273	ENST00000469737		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000448268	ENST00000223273		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000448268		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000432096		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000448268	ENST00000469737		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000432096	ENST00000223273		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000448268		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000432096		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000432096	ENST00000469737		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-3UTR	ENST00000469737	ENST00000223273		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000448268		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000432096		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000469737	ENST00000469737		ChiTaRS3.1			AW819974	YAE1D1	chr7	39611898	-	YAE1D1	chr7	39612447	-
intron-intron	ENST00000372970	ENST00000372970		ChiTaRS3.1			BE089584	OSER1	chr20	42838788	+	OSER1	chr20	42836782	+
intron-intron	ENST00000372970	ENST00000255174		ChiTaRS3.1			BE089584	OSER1	chr20	42838788	+	OSER1	chr20	42836782	+
intron-intron	ENST00000255174	ENST00000372970		ChiTaRS3.1			BE089584	OSER1	chr20	42838788	+	OSER1	chr20	42836782	+
intron-intron	ENST00000255174	ENST00000255174		ChiTaRS3.1			BE089584	OSER1	chr20	42838788	+	OSER1	chr20	42836782	+
intron-intron	ENST00000517298	ENST00000517298		ChiTaRS3.1			BE162394	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000517298	ENST00000321764		ChiTaRS3.1			BE162394	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000321764	ENST00000517298		ChiTaRS3.1			BE162394	CA13	chr8	86276224	+	CA13	chr8	86275891	+
intron-intron	ENST00000321764	ENST00000321764		ChiTaRS3.1			BE162394	CA13	chr8	86276224	+	CA13	chr8	86275891	+
3UTR-intron	ENST00000429289	ENST00000301821		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
3UTR-intron	ENST00000429289	ENST00000443003		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
3UTR-intron	ENST00000429289	ENST00000478027		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
3UTR-intron	ENST00000421648	ENST00000301821		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
3UTR-intron	ENST00000421648	ENST00000443003		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
3UTR-intron	ENST00000421648	ENST00000478027		ChiTaRS3.1			BC015654	EPHA1-AS1	chr7	143112168	-	RPSA	chr19	24009919	+
intron-intron	ENST00000376322	ENST00000376322		ChiTaRS3.1			BE762364	PLP2	chrX	49031338	+	PLP2	chrX	49031102	-
intron-3UTR	ENST00000376322	ENST00000376327		ChiTaRS3.1			BE762364	PLP2	chrX	49031338	+	PLP2	chrX	49031102	-
3UTR-intron	ENST00000376327	ENST00000376322		ChiTaRS3.1			BE762364	PLP2	chrX	49031338	+	PLP2	chrX	49031102	-
3UTR-3UTR	ENST00000376327	ENST00000376327		ChiTaRS3.1			BE762364	PLP2	chrX	49031338	+	PLP2	chrX	49031102	-
intron-3UTR	ENST00000297071	ENST00000296503		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000297071	ENST00000438704		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000297071	ENST00000446922		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000392502	ENST00000296503		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000392502	ENST00000438704		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000392502	ENST00000446922		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000538367	ENST00000296503		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000538367	ENST00000438704		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000538367	ENST00000446922		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000474586	ENST00000296503		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000474586	ENST00000438704		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
intron-3UTR	ENST00000474586	ENST00000446922		ChiTaRS3.1			BF093914	TRA2A	chr7	23547135	+	HMGB2	chr4	174253164	+
5CDS-intron	ENST00000360614	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000360614	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000585374	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000585374	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000593119	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000593119	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000540670	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
5CDS-intron	ENST00000540670	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
intron-intron	ENST00000590729	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
intron-intron	ENST00000590729	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
intron-intron	ENST00000590511	ENST00000356554		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
intron-intron	ENST00000590511	ENST00000482811		ChiTaRS3.1			BC004934	LONP1	chr19	5691845	-	MAN1A2	chr1	117953465	+
intron-intron	ENST00000395957	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395957	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395958	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000457309	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395956	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000353245	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522542	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000521309	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000522819	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395953	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395948	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000395951	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000419477	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000462274		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000338785		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000451934		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000321219		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000339659		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000398960		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000398956		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000492736	ENST00000455387		ChiTaRS3.1			AW860114	YWHAZ	chr8	101961402	+	DYRK1A	chr21	38741331	-
intron-intron	ENST00000328908	ENST00000370801		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000328908	ENST00000370798		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000328908	ENST00000476275		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000397588	ENST00000370801		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000397588	ENST00000370798		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000397588	ENST00000476275		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000472453	ENST00000370801		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000472453	ENST00000370798		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000472453	ENST00000476275		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000449732	ENST00000370801		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000449732	ENST00000370798		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000449732	ENST00000476275		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000343762	ENST00000370801		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000343762	ENST00000370798		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000343762	ENST00000476275		ChiTaRS3.1			BE042764	CDYL	chr6	4739546	+	ZZZ3	chr1	78036110	+
intron-intron	ENST00000359867	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000359867	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000396832	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000400206	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000403904	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000413574	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000405675	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000359867		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000396832		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000400206		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000403904		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000413574		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000405675		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-intron	ENST00000498529	ENST00000498529		ChiTaRS3.1			CN284174	CSNK1E	chr22	38690126	+	CSNK1E	chr22	38689977	-
intron-3CDS	ENST00000558170	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000558170	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000558170	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000558170	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000409487	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000409487	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000409487	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000409487	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000303660	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000303660	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000303660	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000303660	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000539609	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000539609	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000539609	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000539609	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000493689	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000493689	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000493689	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000493689	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000470879	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000470879	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000470879	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000470879	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000465070	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000465070	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000465070	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000465070	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000462355	ENST00000244007		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000462355	ENST00000373272		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3CDS	ENST00000462355	ENST00000373271		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000462355	ENST00000608689		ChiTaRS3.1			AW894554	ZEB2	chr2	145271818	+	PLCG1	chr20	39801151	-
intron-3UTR	ENST00000402673	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000402673	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000402673	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-3UTR	ENST00000507419	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000507419	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000507419	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-3UTR	ENST00000439578	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000439578	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000439578	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-3UTR	ENST00000502539	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000502539	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000502539	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-3UTR	ENST00000509937	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000509937	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000509937	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-3UTR	ENST00000504242	ENST00000377669		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000504242	ENST00000377666		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000504242	ENST00000472022		ChiTaRS3.1			CN421624	SAR1B	chr5	133938876	-	KLF12	chr13	74263784	-
intron-intron	ENST00000567020	ENST00000567020		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000567020	ENST00000293970		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000567020	ENST00000434757		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000293970	ENST00000567020		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000293970	ENST00000293970		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000293970	ENST00000434757		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000434757	ENST00000567020		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000434757	ENST00000293970		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-intron	ENST00000434757	ENST00000434757		ChiTaRS3.1			D82114	TBC1D24	chr16	2569769	-	TBC1D24	chr16	2569889	+
intron-3UTR	ENST00000304372	ENST00000395170		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000304372	ENST00000547306		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000304372	ENST00000316299		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000304372	ENST00000548065		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000304372	ENST00000552212		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000562860	ENST00000395170		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000562860	ENST00000547306		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000562860	ENST00000316299		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000562860	ENST00000548065		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-3UTR	ENST00000562860	ENST00000552212		ChiTaRS3.1			BE939184	KCTD19	chr16	67332507	-	PRKAG1	chr12	49396616	+
intron-intron	ENST00000367178	ENST00000543571		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367178	ENST00000253339		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367178	ENST00000542747		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367178	ENST00000392273		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000461219	ENST00000543571		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000461219	ENST00000253339		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000461219	ENST00000542747		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000461219	ENST00000392273		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000417268	ENST00000543571		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000417268	ENST00000253339		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000417268	ENST00000542747		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000417268	ENST00000392273		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367186	ENST00000543571		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367186	ENST00000253339		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367186	ENST00000542747		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
intron-intron	ENST00000367186	ENST00000392273		ChiTaRS3.1			BE006984	SCAF8	chr6	155085491	-	LATS1	chr6	150002102	+
3UTR-intron	ENST00000340857	ENST00000342228		ChiTaRS3.1			BF748524	H1F0	chr22	38202213	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520262		ChiTaRS3.1			BF748524	H1F0	chr22	38202213	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000520179		ChiTaRS3.1			BF748524	H1F0	chr22	38202213	+	SLC20A2	chr8	42318645	-
3UTR-intron	ENST00000340857	ENST00000523340		ChiTaRS3.1			BF748524	H1F0	chr22	38202213	+	SLC20A2	chr8	42318645	-
Frame-shit	ENST00000155840	ENST00000155840		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
5CDS-intron	ENST00000155840	ENST00000335475		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
5CDS-intron	ENST00000155840	ENST00000526095		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-3CDS	ENST00000335475	ENST00000155840		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-intron	ENST00000335475	ENST00000335475		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-intron	ENST00000335475	ENST00000526095		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-3CDS	ENST00000526095	ENST00000155840		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-intron	ENST00000526095	ENST00000335475		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-intron	ENST00000526095	ENST00000526095		ChiTaRS3.1			U89364	KCNQ1	chr11	2466566	-	KCNQ1	chr11	2466646	+
intron-3UTR	ENST00000389677	ENST00000389677		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3UTR	ENST00000389677	ENST00000538471		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-5UTR	ENST00000389677	ENST00000461803		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3UTR	ENST00000538471	ENST00000389677		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3UTR	ENST00000538471	ENST00000538471		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-5UTR	ENST00000538471	ENST00000461803		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3UTR	ENST00000461803	ENST00000389677		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3UTR	ENST00000461803	ENST00000538471		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-5UTR	ENST00000461803	ENST00000461803		ChiTaRS3.1			H88334	FAXC	chr6	99728730	+	FAXC	chr6	99728785	-
intron-3CDS	ENST00000483366	ENST00000325568		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000534507		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000531965		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000396887		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000529699		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000526464		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000440815		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000529550		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000551122		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000525643		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000528163		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000530890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000444393		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000533097		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000008180		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000396890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000548652		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000530538		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000549213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000552936		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000548476		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000552664		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000552356		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000551513		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000382213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000483366	ENST00000548246		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000325568		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000534507		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000531965		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000396887		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000529699		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000526464		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000440815		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000529550		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000551122		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000525643		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000528163		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000530890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000444393		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000533097		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000008180		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000396890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000548652		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000530538		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000549213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000552936		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000548476		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000552664		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000552356		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000551513		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000382213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-3CDS	ENST00000379458	ENST00000548246		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000325568		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000534507		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000531965		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000396887		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000529699		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000526464		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000440815		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000529550		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000551122		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000525643		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000528163		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000530890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000444393		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000533097		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000008180		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000396890		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000548652		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000530538		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000549213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000552936		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000548476		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000552664		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000552356		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000551513		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000382213		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
3UTR-3CDS	ENST00000319509	ENST00000548246		ChiTaRS3.1			BE842884	MUC3A	chr7	100610824	-	IL32	chr16	3119007	-
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000534312	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000534312	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000534312	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000534312	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000395850	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000395850	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000395850	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000395850	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000533403	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000533403	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000533403	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000533403	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000351554	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000351554	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000351554	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000351554	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000415002	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000415002	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000415002	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000415002	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000445143	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000445143	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000445143	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000445143	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000426650	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000426650	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000426650	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000426650	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000437761	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000437761	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000437761	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000437761	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000527577	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000527577	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000527577	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000527577	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000528700	ENST00000395850		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000528700	ENST00000533403		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000528700	ENST00000351554		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-3UTR	ENST00000528700	ENST00000415002		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BM968544	CD59	chr11	33730470	+	CD59	chr11	33730720	-
intron-intron	ENST00000369603	ENST00000604900		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000369603	ENST00000412716		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000369603	ENST00000449723		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000549555		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000439799		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000425012		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000549732		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000551534		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369603	ENST00000551313		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000604900		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000369592	ENST00000412716		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000369592	ENST00000449723		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000549555		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000439799		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000425012		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000549732		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000551534		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000369592	ENST00000551313		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000604900		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000471297	ENST00000412716		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000471297	ENST00000449723		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000549555		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000439799		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000425012		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000549732		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000551534		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-intron	ENST00000471297	ENST00000551313		ChiTaRS3.1			AW844104	SMNDC1	chr10	112058483	+	DAZAP2	chr12	51637019	+
intron-3UTR	ENST00000520468	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000297564	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000520271	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000517682	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000524245	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000522940	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000518171	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-3UTR	ENST00000523016	ENST00000268171		ChiTaRS3.1			T10274	COX6C	chr8	100899775	+	FURIN	chr15	91426152	-
intron-intron	ENST00000421515	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000421515	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000388759	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000443659	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000425478	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000437230	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000412028	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000415901	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000421515		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000388759		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000443659		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000425478		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000437230		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000412028		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000415901		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000416026	ENST00000416026		ChiTaRS3.1			BE540744	NKIRAS1	chr3	23962202	-	NKIRAS1	chr3	23961703	+
intron-intron	ENST00000332644	ENST00000379509		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
intron-intron	ENST00000332644	ENST00000319406		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
intron-intron	ENST00000332644	ENST00000491680		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
intron-intron	ENST00000332644	ENST00000359433		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
intron-intron	ENST00000332644	ENST00000309052		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
intron-intron	ENST00000332644	ENST00000540623		ChiTaRS3.1			BF354474	TMPRSS11B	chr4	69093593	-	LCLAT1	chr2	30692084	-
Frame-shit	ENST00000234160	ENST00000234160		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
5CDS-intron	ENST00000234160	ENST00000493692		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
5CDS-intron	ENST00000234160	ENST00000452526		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
3UTR-3CDS	ENST00000493692	ENST00000234160		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
3UTR-intron	ENST00000493692	ENST00000493692		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
3UTR-intron	ENST00000493692	ENST00000452526		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
Frame-shit	ENST00000452526	ENST00000234160		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
5CDS-intron	ENST00000452526	ENST00000493692		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
5CDS-intron	ENST00000452526	ENST00000452526		ChiTaRS3.1			W26854	GORASP2	chr2	171818206	-	GORASP2	chr2	171811182	+
intron-intron	ENST00000295974	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000295974	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000513140	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000508593	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000506352	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000511572	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000543538	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000502841	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000421515		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000388759		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000443659		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000425478		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000437230		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000412028		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000415901		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000504305	ENST00000416026		ChiTaRS3.1			BE172914	APBB2	chr4	41017979	+	NKIRAS1	chr3	23961845	+
intron-intron	ENST00000339556	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000339556	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000339556	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000339556	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000339556	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000339556	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392622	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392622	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392622	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392622	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392622	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000392622	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392623	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392623	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392623	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392623	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000392623	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000392623	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000440685	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000440685	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000440685	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000440685	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000440685	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000440685	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000368699	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000368699	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000368699	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000368699	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000368699	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000368699	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000491177	ENST00000339556		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000491177	ENST00000392622		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000491177	ENST00000392623		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000491177	ENST00000440685		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000491177	ENST00000368699		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-5UTR	ENST00000491177	ENST00000491177		ChiTaRS3.1			CN281544	S100A13	chr1	153599671	+	S100A13	chr1	153599901	-
intron-intron	ENST00000425346	ENST00000425346		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000425346	ENST00000424512		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000425346	ENST00000232508		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-5UTR	ENST00000425346	ENST00000418577		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-3UTR	ENST00000425346	ENST00000419046		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000424512	ENST00000425346		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000424512	ENST00000424512		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000424512	ENST00000232508		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-5UTR	ENST00000424512	ENST00000418577		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-3UTR	ENST00000424512	ENST00000419046		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000232508	ENST00000425346		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000232508	ENST00000424512		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-intron	ENST00000232508	ENST00000232508		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-5UTR	ENST00000232508	ENST00000418577		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-3UTR	ENST00000232508	ENST00000419046		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
5UTR-intron	ENST00000418577	ENST00000425346		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
5UTR-intron	ENST00000418577	ENST00000424512		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
5UTR-intron	ENST00000418577	ENST00000232508		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
5UTR-5UTR	ENST00000418577	ENST00000418577		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
5UTR-3UTR	ENST00000418577	ENST00000419046		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
3UTR-intron	ENST00000419046	ENST00000425346		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
3UTR-intron	ENST00000419046	ENST00000424512		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
3UTR-intron	ENST00000419046	ENST00000232508		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
3UTR-5UTR	ENST00000419046	ENST00000418577		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
3UTR-3UTR	ENST00000419046	ENST00000419046		ChiTaRS3.1			BI019234	CYB561D2	chr3	50388577	-	CYB561D2	chr3	50388509	+
intron-3UTR	ENST00000234590	ENST00000234590		ChiTaRS3.1			BI088704	ENO1	chr1	8921293	+	ENO1	chr1	8921242	-
intron-intron	ENST00000368679	ENST00000368679		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000368679	ENST00000368676		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000368679	ENST00000467145		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000368676	ENST00000368679		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000368676	ENST00000368676		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000368676	ENST00000467145		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000467145	ENST00000368679		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000467145	ENST00000368676		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000467145	ENST00000467145		ChiTaRS3.1			DB302554	ADAM12	chr10	127818971	+	ADAM12	chr10	127817286	-
intron-intron	ENST00000357195	ENST00000357195		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000345514		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000357195	ENST00000443726		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000357195		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000345514		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000345514	ENST00000443726		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000357195		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000345514		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
intron-intron	ENST00000443726	ENST00000443726		ChiTaRS3.1			EL582474	BCL11B	chr14	99655740	-	BCL11B	chr14	99655477	+
5CDS-intron	ENST00000379802	ENST00000554335		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000251091		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000555112		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000392067		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000357634		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000379802	ENST00000555192		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000554335		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000251091		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000555112		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000392067		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000357634		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
5CDS-intron	ENST00000418664	ENST00000555192		ChiTaRS3.1			BE939914	DSP	chr6	7558480	-	SAMD4A	chr14	55171429	+
intron-3UTR	ENST00000225964	ENST00000225964		ChiTaRS3.1			BM313794	COL1A1	chr17	48262944	+	COL1A1	chr17	48261972	+
5CDS-3UTR	ENST00000300093	ENST00000322611		ChiTaRS3.1			BE925244	PLK1	chr16	23695247	+	BASP1	chr5	17276554	+
intron-3UTR	ENST00000564202	ENST00000322611		ChiTaRS3.1			BE925244	PLK1	chr16	23695247	+	BASP1	chr5	17276554	+
intron-3CDS	ENST00000499869	ENST00000499869		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000499869	ENST00000382451		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000499869	ENST00000382452		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000499869	ENST00000515743		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000499869	ENST00000502702		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382451	ENST00000499869		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382451	ENST00000382451		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382451	ENST00000382452		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000382451	ENST00000515743		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000382451	ENST00000502702		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382452	ENST00000499869		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382452	ENST00000382451		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000382452	ENST00000382452		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000382452	ENST00000515743		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000382452	ENST00000502702		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000515743	ENST00000499869		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000515743	ENST00000382451		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000515743	ENST00000382452		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000515743	ENST00000515743		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000515743	ENST00000502702		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000502702	ENST00000499869		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000502702	ENST00000382451		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000502702	ENST00000382452		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000502702	ENST00000515743		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-5UTR	ENST00000502702	ENST00000502702		ChiTaRS3.1			DB480484	WDR1	chr4	10076915	-	WDR1	chr4	10079550	-
intron-3CDS	ENST00000261191	ENST00000261191		ChiTaRS3.1			BE258274	ASUN	chr12	27066414	-	ASUN	chr12	27066536	+
intron-3CDS	ENST00000261191	ENST00000539625		ChiTaRS3.1			BE258274	ASUN	chr12	27066414	-	ASUN	chr12	27066536	+
intron-3CDS	ENST00000539625	ENST00000261191		ChiTaRS3.1			BE258274	ASUN	chr12	27066414	-	ASUN	chr12	27066536	+
intron-3CDS	ENST00000539625	ENST00000539625		ChiTaRS3.1			BE258274	ASUN	chr12	27066414	-	ASUN	chr12	27066536	+
intron-3UTR	ENST00000592554	ENST00000310298		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000592554	ENST00000557957		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000592554	ENST00000394553		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000592554	ENST00000339708		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000592554	ENST00000557819		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000310298		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000557957		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000394553		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000226094	ENST00000339708		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000226094	ENST00000557819		ChiTaRS3.1			W92044	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
3UTR-3UTR	ENST00000295092	ENST00000336314		ChiTaRS3.1			AW953744	FAM84A	chr2	14776030	+	LARP1	chr5	154196866	-
3UTR-3UTR	ENST00000331243	ENST00000336314		ChiTaRS3.1			AW953744	FAM84A	chr2	14776030	+	LARP1	chr5	154196866	-
intron-3UTR	ENST00000497769	ENST00000336314		ChiTaRS3.1			AW953744	FAM84A	chr2	14776030	+	LARP1	chr5	154196866	-
intron-3UTR	ENST00000262301	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000262301	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000399843	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000543238	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568897	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000568268	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000417856		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000394067		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000421552		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000316924		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000394078		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000394066		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-3UTR	ENST00000539379	ENST00000394065		ChiTaRS3.1			CB046524	LMF1	chr16	1025938	+	KLC2	chr11	66035106	+
intron-intron	ENST00000380394	ENST00000380394		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380394	ENST00000498815		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380394	ENST00000380384		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380394	ENST00000315377		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380394	ENST00000380381		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000498815	ENST00000380394		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000498815	ENST00000498815		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000498815	ENST00000380384		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000498815	ENST00000315377		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000498815	ENST00000380381		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380384	ENST00000380394		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380384	ENST00000498815		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380384	ENST00000380384		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380384	ENST00000315377		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380384	ENST00000380381		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000315377	ENST00000380394		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000315377	ENST00000498815		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000315377	ENST00000380384		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000315377	ENST00000315377		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000315377	ENST00000380381		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380381	ENST00000380394		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380381	ENST00000498815		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380381	ENST00000380384		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380381	ENST00000315377		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000380381	ENST00000380381		ChiTaRS3.1			AW970974	RPS6	chr9	19376905	-	RPS6	chr9	19376844	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BE762714	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000462445	ENST00000469224		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-3UTR	ENST00000462445	ENST00000394965		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-3UTR	ENST00000462445	ENST00000310271		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-intron	ENST00000462445	ENST00000484952		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-intron	ENST00000242465	ENST00000469224		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-3UTR	ENST00000242465	ENST00000394965		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-3UTR	ENST00000242465	ENST00000310271		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-intron	ENST00000242465	ENST00000484952		ChiTaRS3.1			BE826074	SRGN	chr10	70855065	-	ALAS1	chr3	52248326	-
intron-3UTR	ENST00000341049	ENST00000274364		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000341049	ENST00000379730		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000341049	ENST00000396234		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000341049	ENST00000502745		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000341049	ENST00000508410		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393470	ENST00000274364		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393470	ENST00000379730		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393470	ENST00000396234		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393470	ENST00000502745		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393470	ENST00000508410		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000405348	ENST00000274364		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000405348	ENST00000379730		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000405348	ENST00000396234		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000405348	ENST00000502745		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000405348	ENST00000508410		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393468	ENST00000274364		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393468	ENST00000379730		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393468	ENST00000396234		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393468	ENST00000502745		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393468	ENST00000508410		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393467	ENST00000274364		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393467	ENST00000379730		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393467	ENST00000396234		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-intron	ENST00000393467	ENST00000502745		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
intron-3UTR	ENST00000393467	ENST00000508410		ChiTaRS3.1			BE930754	CAV1	chr7	116184295	-	IQGAP2	chr5	76003230	-
Frame-shit	ENST00000354190	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000354190	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000354190	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000354190	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000354190	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000354190	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000354190	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398492	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398492	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398492	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398492	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398492	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000398492	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000398492	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000227214	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000227214	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000227214	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000227214	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000227214	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000227214	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000227214	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398494	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398494	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398494	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398494	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000398494	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000398494	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000398494	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3CDS	ENST00000543085	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3CDS	ENST00000543085	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3CDS	ENST00000543085	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3CDS	ENST00000543085	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3CDS	ENST00000543085	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3UTR	ENST00000543085	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-3UTR	ENST00000543085	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3CDS	ENST00000544532	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3CDS	ENST00000544532	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3CDS	ENST00000544532	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3CDS	ENST00000544532	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3CDS	ENST00000544532	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3UTR	ENST00000544532	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
3UTR-3UTR	ENST00000544532	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000535129	ENST00000354190		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000535129	ENST00000398492		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000535129	ENST00000227214		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000535129	ENST00000398494		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
Frame-shit	ENST00000535129	ENST00000543085		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000535129	ENST00000544532		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
5CDS-3UTR	ENST00000535129	ENST00000535129		ChiTaRS3.1			BF364674	PLEKHB1	chr11	73361679	+	PLEKHB1	chr11	73360118	-
intron-intron	ENST00000340635	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000340635	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000340635	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000360047	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000360047	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000360047	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000507116	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000507116	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000507116	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000502484	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000502484	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000502484	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000546160	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000546160	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000546160	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000502575	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000502575	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000502575	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000358923	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000358923	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000358923	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000503258	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000503258	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000503258	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000405755	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000405755	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000405755	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000317118	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000317118	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000317118	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000503947	ENST00000584767		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000503947	ENST00000581589		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-3UTR	ENST00000503947	ENST00000322444		ChiTaRS3.1			DA522054	PDE4D	chr5	58883684	-	KCTD2	chr17	73059857	+
intron-intron	ENST00000372980	ENST00000360652		ChiTaRS3.1			BE074834	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000372980	ENST00000356872		ChiTaRS3.1			BE074834	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000342272	ENST00000360652		ChiTaRS3.1			BE074834	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000342272	ENST00000356872		ChiTaRS3.1			BE074834	JPH2	chr20	42806430	+	PCED1A	chr20	2817656	+
intron-intron	ENST00000258874	ENST00000326195		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000376545		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000396515		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000457111		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000452530		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000416932		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000470464		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000419893		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000448939		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000457970		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000475528		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000457078		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000412443		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000546690		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000421608		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000486105		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000383588		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000383587		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000400609		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000485585		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000426219		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000421042		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000552867		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000454094		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000258874	ENST00000494413		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000258874	ENST00000423247		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000258874	ENST00000420257		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000258874	ENST00000456791		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000258874	ENST00000495194		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000326195		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000376545		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000396515		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000457111		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000452530		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000416932		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000470464		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000419893		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000448939		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000457970		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000475528		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000457078		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000412443		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000546690		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000421608		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000486105		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000383588		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000383587		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000400609		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000485585		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000426219		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000421042		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000552867		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000454094		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-intron	ENST00000559722	ENST00000494413		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000559722	ENST00000423247		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000559722	ENST00000420257		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000559722	ENST00000456791		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3UTR	ENST00000559722	ENST00000495194		ChiTaRS3.1			BE763194	MTHFS	chr15	80157837	-	ABCF1	chr6	1890845	+
intron-3CDS	ENST00000223127	ENST00000223127		ChiTaRS3.1			BF340804	PLOD3	chr7	100855857	+	PLOD3	chr7	100855612	-
intron-3UTR	ENST00000439155	ENST00000448464		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000439155	ENST00000342697		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000439155	ENST00000378776		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000367429	ENST00000448464		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000367429	ENST00000342697		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000367429	ENST00000378776		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000496761	ENST00000448464		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000496761	ENST00000342697		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000496761	ENST00000378776		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000359637	ENST00000448464		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-3UTR	ENST00000359637	ENST00000342697		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000359637	ENST00000378776		ChiTaRS3.1			AW959894	CFH	chr1	196644936	+	TP53INP1	chr8	95939521	-
intron-intron	ENST00000282470	ENST00000478300		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000282470	ENST00000295894		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000282470	ENST00000479198		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000282470	ENST00000478744		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000282470	ENST00000460711		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000282470	ENST00000465156		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000478300		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000295894		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000479198		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000478744		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000460711		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000418378	ENST00000465156		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000478300		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000295894		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000479198		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000478744		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000460711		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-intron	ENST00000503414	ENST00000465156		ChiTaRS3.1			AW894814	SPARCL1	chr4	88415409	-	SYNPR	chr3	63502681	+
intron-3UTR	ENST00000508628	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000508628	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000508628	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000508628	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000456466	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000456466	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000456466	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000456466	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000582970	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000582970	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000582970	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000582970	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000319921	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000319921	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000319921	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000319921	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000336301	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000336301	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000336301	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000336301	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000427003	ENST00000299427		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-3UTR	ENST00000427003	ENST00000533371		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000427003	ENST00000534644		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
intron-intron	ENST00000427003	ENST00000528657		ChiTaRS3.1			BI027704	RNF213	chr17	78366958	-	TPP1	chr11	6635336	+
5CDS-intron	ENST00000382535	ENST00000299563		ChiTaRS3.1			AW952674	FOXG1	chr14	29237911	-	RNF169	chr11	74495901	+
5CDS-intron	ENST00000313071	ENST00000299563		ChiTaRS3.1			AW952674	FOXG1	chr14	29237911	-	RNF169	chr11	74495901	+
intron-intron	ENST00000372880	ENST00000393709		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000496961		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000533024		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000372880	ENST00000310611		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000527072		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000420578		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000528785		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000372880	ENST00000369868		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000372880	ENST00000430195		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000393709		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000496961		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000533024		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000308731	ENST00000310611		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000527072		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000420578		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000528785		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000308731	ENST00000369868		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000308731	ENST00000430195		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000393709		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000496961		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000533024		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000464567	ENST00000310611		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000527072		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000420578		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000528785		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000464567	ENST00000369868		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-3UTR	ENST00000464567	ENST00000430195		ChiTaRS3.1			BE047734	BTK	chrX	100635253	-	CYB561D1	chr1	110042114	+
intron-intron	ENST00000370310	ENST00000537532		ChiTaRS3.1			L44454	FAM69A	chr1	93423761	-	ZNF664	chr12	124471779	-
intron-intron	ENST00000370310	ENST00000539644		ChiTaRS3.1			L44454	FAM69A	chr1	93423761	-	ZNF664	chr12	124471779	-
intron-intron	ENST00000370310	ENST00000392404		ChiTaRS3.1			L44454	FAM69A	chr1	93423761	-	ZNF664	chr12	124471779	-
intron-intron	ENST00000370310	ENST00000538932		ChiTaRS3.1			L44454	FAM69A	chr1	93423761	-	ZNF664	chr12	124471779	-
intron-intron	ENST00000370310	ENST00000337815		ChiTaRS3.1			L44454	FAM69A	chr1	93423761	-	ZNF664	chr12	124471779	-
intron-5UTR	ENST00000379056	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000379056	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379056	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379056	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379056	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379056	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000529421	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000529421	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000529421	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000529421	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000529421	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000529421	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000530705	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000530705	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000530705	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000530705	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000530705	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000530705	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379060	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000379060	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379060	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379060	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379060	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379060	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379055	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000379055	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379055	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379055	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379055	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000379055	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000309246	ENST00000379056		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000309246	ENST00000529421		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000309246	ENST00000530705		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000309246	ENST00000379060		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000309246	ENST00000379055		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-5UTR	ENST00000309246	ENST00000309246		ChiTaRS3.1			BE174904	TPT1	chr13	45914199	-	TPT1	chr13	45915206	-
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM050746	KMT2A	chr11	118353562	+	MLLT1	chr19	6271560	-
intron-3UTR	ENST00000329153	ENST00000329153		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000329153	ENST00000417684		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000329153	ENST00000559832		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-3UTR	ENST00000417684	ENST00000329153		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000417684	ENST00000417684		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000417684	ENST00000559832		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-3UTR	ENST00000559832	ENST00000329153		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000559832	ENST00000417684		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
intron-intron	ENST00000559832	ENST00000559832		ChiTaRS3.1			DB309444	PLEKHH1	chr14	68049459	-	PLEKHH1	chr14	68054359	-
Frame-shit	ENST00000413916	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000413916	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000309315	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000441627	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000433667	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
Frame-shit	ENST00000265346	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000261700		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000463931	ENST00000556760		ChiTaRS3.1			BI059834	ZMIZ2	chr7	44801458	-	C14orf166	chr14	52466456	+
intron-3CDS	ENST00000281471	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000281471	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000281471	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000281471	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000281471	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000281471	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000537562	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000537562	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000537562	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000537562	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000537562	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000537562	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541931	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541931	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541931	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541931	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541931	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541931	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000536761	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000536761	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000536761	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000536761	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000536761	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000536761	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000542781	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000542781	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000542781	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000542781	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000542781	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000542781	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541541	ENST00000374189		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541541	ENST00000374182		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-3CDS	ENST00000541541	ENST00000360332		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541541	ENST00000374174		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541541	ENST00000395611		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000541541	ENST00000459755		ChiTaRS3.1			BF196394	AMN1	chr12	31824260	+	MAPK8	chr10	49633955	+
intron-intron	ENST00000325455	ENST00000390548		ChiTaRS3.1			BF752574	PGR	chr11	101000351	+	IGHG1	chr14	107013113	-
intron-intron	ENST00000534013	ENST00000390548		ChiTaRS3.1			BF752574	PGR	chr11	101000351	+	IGHG1	chr14	107013113	-
intron-intron	ENST00000263463	ENST00000390548		ChiTaRS3.1			BF752574	PGR	chr11	101000351	+	IGHG1	chr14	107013113	-
intron-intron	ENST00000378531	ENST00000381941		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378531	ENST00000304189		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378531	ENST00000381939		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378531	ENST00000246100		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378531	ENST00000541082		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000606372	ENST00000381941		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000606372	ENST00000304189		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000606372	ENST00000381939		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000606372	ENST00000246100		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000606372	ENST00000541082		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378529	ENST00000381941		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378529	ENST00000304189		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378529	ENST00000381939		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378529	ENST00000246100		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000378529	ENST00000541082		ChiTaRS3.1			BC004334	MORN1	chr1	2282309	-	FAM110A	chr20	820644	-
intron-intron	ENST00000515064	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000515064	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000441778	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000304523	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000502640	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503178	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000378954		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000406122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000402054		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000539122		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000332337		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000419554		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000452935		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000546051		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-intron	ENST00000503829	ENST00000486927		ChiTaRS3.1			R06104	LDB2	chr4	16823309	-	ATL2	chr2	38591939	-
intron-3CDS	ENST00000565698	ENST00000565698		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000565698	ENST00000304658		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000565698	ENST00000561488		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000304658	ENST00000565698		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000304658	ENST00000304658		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000304658	ENST00000561488		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000561488	ENST00000565698		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-3CDS	ENST00000561488	ENST00000304658		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-5UTR	ENST00000561488	ENST00000561488		ChiTaRS3.1			BE183304	XPO6	chr16	28157483	+	XPO6	chr16	28167548	-
intron-intron	ENST00000371837	ENST00000371837		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000371837	ENST00000487618		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000371837	ENST00000336233		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000371837	ENST00000456827		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000487618	ENST00000371837		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000487618	ENST00000487618		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000487618	ENST00000336233		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000487618	ENST00000456827		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000336233	ENST00000371837		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000336233	ENST00000487618		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000336233	ENST00000336233		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000336233	ENST00000456827		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000456827	ENST00000371837		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000456827	ENST00000487618		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000456827	ENST00000336233		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-5UTR	ENST00000456827	ENST00000456827		ChiTaRS3.1			BP300794	LIPA	chr10	90974426	-	LIPA	chr10	91011532	-
intron-intron	ENST00000541428	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000541428	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379454	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000523897	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522919	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000356457	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000518068	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517903	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000445642	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517847	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522835	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517856	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000389204	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000522603	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000379449	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000541428		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000379454		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000523897		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000522919		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000356457		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000518068		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000517903		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000445642		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000517847		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000522835		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000517856		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000389204		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000522603		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000379449		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
intron-intron	ENST00000517661	ENST00000517661		ChiTaRS3.1			BE089554	ASPH	chr8	62596762	+	ASPH	chr8	62593527	+
3UTR-3CDS	ENST00000377869	ENST00000377869		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000377869	ENST00000220616		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000377869	ENST00000542445		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000377869	ENST00000519543		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-intron	ENST00000377869	ENST00000522523		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000220616	ENST00000377869		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000220616	ENST00000220616		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000220616	ENST00000542445		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000220616	ENST00000519543		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-intron	ENST00000220616	ENST00000522523		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
In-frame	ENST00000542445	ENST00000377869		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
Frame-shit	ENST00000542445	ENST00000220616		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
In-frame	ENST00000542445	ENST00000542445		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
Frame-shit	ENST00000542445	ENST00000519543		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
5CDS-intron	ENST00000542445	ENST00000522523		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000519543	ENST00000377869		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000519543	ENST00000220616		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000519543	ENST00000542445		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-3CDS	ENST00000519543	ENST00000519543		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
3UTR-intron	ENST00000519543	ENST00000522523		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
intron-3CDS	ENST00000522523	ENST00000377869		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
intron-3CDS	ENST00000522523	ENST00000220616		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
intron-3CDS	ENST00000522523	ENST00000542445		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
intron-3CDS	ENST00000522523	ENST00000519543		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
intron-intron	ENST00000522523	ENST00000522523		ChiTaRS3.1			BF061174	TG	chr8	134147074	-	TG	chr8	134146934	+
Frame-shit	ENST00000258484	ENST00000348370		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
Frame-shit	ENST00000258484	ENST00000434298		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
Frame-shit	ENST00000258484	ENST00000559209		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
Frame-shit	ENST00000258484	ENST00000557998		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
Frame-shit	ENST00000258484	ENST00000561186		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
5CDS-intron	ENST00000258484	ENST00000560080		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-3CDS	ENST00000409654	ENST00000348370		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-3CDS	ENST00000409654	ENST00000434298		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-3CDS	ENST00000409654	ENST00000559209		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-3CDS	ENST00000409654	ENST00000557998		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-3CDS	ENST00000409654	ENST00000561186		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-intron	ENST00000409654	ENST00000560080		ChiTaRS3.1			BF329244	EPC2	chr2	149519492	+	RNF111	chr15	59359150	-
intron-intron	ENST00000462484	ENST00000462484		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000462484	ENST00000334856		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000462484	ENST00000460843		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000462484	ENST00000371394		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000334856	ENST00000462484		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000334856	ENST00000334856		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000334856	ENST00000460843		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000334856	ENST00000371394		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000460843	ENST00000462484		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000460843	ENST00000334856		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000460843	ENST00000460843		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000460843	ENST00000371394		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000371394	ENST00000462484		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000371394	ENST00000334856		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000371394	ENST00000460843		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-intron	ENST00000371394	ENST00000371394		ChiTaRS3.1			CV420354	EHMT1	chr9	140721748	-	EHMT1	chr9	140721670	+
intron-3UTR	ENST00000371714	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371714	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000371714	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371714	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371714	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000371710	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371710	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000371710	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371710	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000371710	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000337809	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000337809	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000337809	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000337809	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000337809	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000435686	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000435686	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000435686	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000435686	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000435686	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000447887	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000447887	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000447887	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000447887	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000447887	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000453295	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000453295	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000453295	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000453295	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000453295	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000428468	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000428468	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000428468	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000428468	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000428468	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000530544	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000530544	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000530544	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000530544	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000530544	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000531828	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000531828	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000531828	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000531828	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000531828	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000361556	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000361556	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000361556	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000361556	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000361556	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000473207	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000473207	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000473207	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000473207	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000473207	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000462759	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000462759	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000462759	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000462759	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000462759	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000486942	ENST00000313334		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000486942	ENST00000489308		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-3UTR	ENST00000486942	ENST00000472944		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000486942	ENST00000484036		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000486942	ENST00000533836		ChiTaRS3.1			BM461494	OSBPL9	chr1	52204276	-	BTF3L4	chr1	52553646	+
intron-intron	ENST00000546500	ENST00000331471		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000488961		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000330891		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000553096		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000476098		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000266661		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000551160		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000393365		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000546500	ENST00000533674		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000331471		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000488961		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000330891		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000553096		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000476098		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000266661		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000551160		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000393365		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000340913	ENST00000533674		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000331471		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000488961		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000330891		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000553096		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000476098		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000266661		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000551160		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000393365		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000330752	ENST00000533674		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000331471		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000488961		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000330891		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000553096		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000476098		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000266661		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000551160		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000393365		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000547276	ENST00000533674		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000331471		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000488961		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000330891		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000553096		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000476098		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000266661		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000551160		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000393365		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-intron	ENST00000551803	ENST00000533674		ChiTaRS3.1			CR748314	HNRNPA1	chr12	54674858	+	BEST3	chr12	70065944	-
intron-3CDS	ENST00000355387	ENST00000263253		ChiTaRS3.1			BF766544	RNF220	chr1	45109570	-	EP300	chr22	41546122	-
intron-3CDS	ENST00000361799	ENST00000263253		ChiTaRS3.1			BF766544	RNF220	chr1	45109570	-	EP300	chr22	41546122	-
intron-3CDS	ENST00000372247	ENST00000263253		ChiTaRS3.1			BF766544	RNF220	chr1	45109570	-	EP300	chr22	41546122	-
intron-3CDS	ENST00000443020	ENST00000263253		ChiTaRS3.1			BF766544	RNF220	chr1	45109570	-	EP300	chr22	41546122	-
3UTR-3CDS	ENST00000480686	ENST00000263253		ChiTaRS3.1			BF766544	RNF220	chr1	45109570	-	EP300	chr22	41546122	-
Frame-shit	ENST00000301740	ENST00000301740		ChiTaRS3.1			AW889684	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
5CDS-intron	ENST00000301740	ENST00000574593		ChiTaRS3.1			AW889684	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-3CDS	ENST00000574593	ENST00000301740		ChiTaRS3.1			AW889684	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-intron	ENST00000574593	ENST00000574593		ChiTaRS3.1			AW889684	SRRM2	chr16	2811975	-	SRRM2	chr16	2816438	+
intron-3CDS	ENST00000263634	ENST00000215793		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000263634	ENST00000439242		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000215793		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000406687	ENST00000439242		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000215793		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000394717	ENST00000439242		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000215793		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000352846	ENST00000439242		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000215793		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000482829	ENST00000439242		ChiTaRS3.1			BF223814	GPR75-ASB3	chr2	54045036	-	SF3A1	chr22	30742490	+
intron-3CDS	ENST00000396502	ENST00000383440		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-3CDS	ENST00000396502	ENST00000262126		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-intron	ENST00000396502	ENST00000540578		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-intron	ENST00000396502	ENST00000400020		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-3CDS	ENST00000338896	ENST00000383440		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-3CDS	ENST00000338896	ENST00000262126		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-intron	ENST00000338896	ENST00000540578		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
intron-intron	ENST00000338896	ENST00000400020		ChiTaRS3.1			BE938624	CLEC12B	chr12	10166676	-	ANKRD12	chr18	9255824	+
Frame-shit	ENST00000372725	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372725	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372725	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
5CDS-5UTR	ENST00000372725	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372724	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372724	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372724	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
5CDS-5UTR	ENST00000372724	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000287239	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000287239	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000287239	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
5CDS-5UTR	ENST00000287239	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
In-frame	ENST00000372714	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
In-frame	ENST00000372714	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
In-frame	ENST00000372714	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
5CDS-5UTR	ENST00000372714	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372711	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372711	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
Frame-shit	ENST00000372711	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
5CDS-5UTR	ENST00000372711	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
intron-3CDS	ENST00000490365	ENST00000360001		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
intron-3CDS	ENST00000490365	ENST00000263741		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
intron-3CDS	ENST00000490365	ENST00000545427		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
intron-5UTR	ENST00000490365	ENST00000459994		ChiTaRS3.1			BE938394	KAT6B	chr10	76788745	+	SDF4	chr1	1164117	+
intron-intron	ENST00000393709	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000393709	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000393709	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000393709	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000393709	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000393709	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000393709	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000393709	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000393709	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000496961	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000496961	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000496961	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000496961	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000496961	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000496961	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000496961	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000496961	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000496961	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000533024	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000533024	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000533024	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000533024	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000533024	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000533024	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000533024	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000533024	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000533024	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000310611	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000310611	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000310611	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000310611	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000310611	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000310611	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000310611	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000310611	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000310611	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000527072	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000527072	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000527072	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000527072	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000527072	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000527072	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000527072	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000527072	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000527072	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000420578	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000420578	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000420578	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000420578	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000420578	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000420578	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000420578	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000420578	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000420578	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000528785	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000528785	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000528785	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000528785	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000528785	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000528785	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000528785	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000528785	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000528785	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000369868	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000369868	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000369868	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000369868	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000369868	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000369868	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000369868	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-intron	ENST00000369868	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
intron-3UTR	ENST00000369868	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000430195	ENST00000393709		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000430195	ENST00000496961		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000430195	ENST00000533024		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000430195	ENST00000310611		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000430195	ENST00000527072		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000430195	ENST00000420578		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000430195	ENST00000528785		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-intron	ENST00000430195	ENST00000369868		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
3UTR-3UTR	ENST00000430195	ENST00000430195		ChiTaRS3.1			CV376024	CYB561D1	chr1	110041355	+	CYB561D1	chr1	110040942	+
Frame-shit	ENST00000324932	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000324932	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000324932	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000324932	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000324932	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000324932	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000359171	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000359171	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000359171	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000359171	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000359171	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000359171	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000355260	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000355260	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000355260	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000355260	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000355260	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000355260	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000397004	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000397004	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000397004	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000397004	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000397004	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000397004	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000397007	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
Frame-shit	ENST00000397007	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000397007	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-5UTR	ENST00000397007	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000397007	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
5CDS-intron	ENST00000397007	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-3CDS	ENST00000488828	ENST00000425354		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-3CDS	ENST00000488828	ENST00000394426		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-5UTR	ENST00000488828	ENST00000327550		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-5UTR	ENST00000488828	ENST00000338561		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-intron	ENST00000488828	ENST00000543726		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-intron	ENST00000488828	ENST00000543762		ChiTaRS3.1			HQ229990	NUP98	chr11	3765739	-	RARG	chr12	53609580	-
intron-intron	ENST00000408667	ENST00000408667		ChiTaRS3.1			AW967474	MIR548F1	chr1	186372882	-	MIR548F1	chr1	186373755	-
intron-3CDS	ENST00000334444	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000334444	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000265586	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000265586	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000492216	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000492216	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000427120	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000427120	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000392579	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000392579	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000382494	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000382494	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000446941	ENST00000356654		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-3CDS	ENST00000446941	ENST00000396684		ChiTaRS3.1			CN409264	ABCC5	chr3	183643388	+	ATN1	chr12	7045390	+
intron-intron	ENST00000488834	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000488834	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000488834	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000474597	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000474597	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000244763	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000244763	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000397511	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000397511	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000534851	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000534851	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000489567	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000489567	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000479365	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000479365	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000488834		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000474597		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-3UTR	ENST00000462112	ENST00000244763		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000397511		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000534851		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000489567		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000479365		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000462112	ENST00000462112		ChiTaRS3.1			BM728644	SSR1	chr6	7283872	-	SSR1	chr6	7285680	-
intron-intron	ENST00000380668	ENST00000380668		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000380668	ENST00000398491		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000380668	ENST00000489404		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000398491	ENST00000380668		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000398491	ENST00000398491		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000398491	ENST00000489404		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000489404	ENST00000380668		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000489404	ENST00000398491		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000489404	ENST00000489404		ChiTaRS3.1			CD358573	PRPS2	chrX	12831135	+	PRPS2	chrX	12826240	+
intron-intron	ENST00000450793	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000450793	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000450793	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000450793	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000450793	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000538141	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000538141	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000538141	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000538141	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000538141	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380180	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380180	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380180	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380180	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380180	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000318007	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000318007	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000318007	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000318007	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000318007	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000437932	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000437932	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000437932	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000437932	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000437932	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000317968	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000317968	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000317968	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000317968	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000317968	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000542407	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000542407	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000542407	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000542407	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000542407	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000508216	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000508216	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000508216	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000508216	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000508216	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000514743	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000514743	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000514743	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000514743	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000514743	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380176	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380176	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380176	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380176	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000380176	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000359265	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000359265	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000359265	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000359265	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000359265	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000512274	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000512274	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000512274	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000512274	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000512274	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000504489	ENST00000340170		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000504489	ENST00000263208		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000504489	ENST00000541063		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000504489	ENST00000546308		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
intron-intron	ENST00000504489	ENST00000464189		ChiTaRS3.1			BX106213	PDLIM5	chr4	95565625	+	HIRA	chr22	19430139	-
3UTR-3CDS	ENST00000246533	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-intron	ENST00000246533	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
intron-3CDS	ENST00000589146	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
intron-intron	ENST00000589146	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-3CDS	ENST00000587718	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-intron	ENST00000587718	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-3CDS	ENST00000590874	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-intron	ENST00000590874	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-3CDS	ENST00000588815	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-intron	ENST00000588815	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-3CDS	ENST00000588780	ENST00000231061		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
3UTR-intron	ENST00000588780	ENST00000537849		ChiTaRS3.1			AW607373	CAPNS1	chr19	36640871	+	SPARC	chr5	151051196	+
intron-3UTR	ENST00000231061	ENST00000231061		ChiTaRS3.1			BU188303	SPARC	chr5	151042725	+	SPARC	chr5	151042689	-
intron-intron	ENST00000231061	ENST00000537849		ChiTaRS3.1			BU188303	SPARC	chr5	151042725	+	SPARC	chr5	151042689	-
intron-3UTR	ENST00000537849	ENST00000231061		ChiTaRS3.1			BU188303	SPARC	chr5	151042725	+	SPARC	chr5	151042689	-
intron-intron	ENST00000537849	ENST00000537849		ChiTaRS3.1			BU188303	SPARC	chr5	151042725	+	SPARC	chr5	151042689	-
intron-3UTR	ENST00000373627	ENST00000373627		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000373627	ENST00000373616		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-5UTR	ENST00000373627	ENST00000471737		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-intron	ENST00000373627	ENST00000538808		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000373616	ENST00000373627		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000373616	ENST00000373616		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-5UTR	ENST00000373616	ENST00000471737		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-intron	ENST00000373616	ENST00000538808		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000471737	ENST00000373627		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000471737	ENST00000373616		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-5UTR	ENST00000471737	ENST00000471737		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-intron	ENST00000471737	ENST00000538808		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000538808	ENST00000373627		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-3UTR	ENST00000538808	ENST00000373616		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-5UTR	ENST00000538808	ENST00000471737		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-intron	ENST00000538808	ENST00000538808		ChiTaRS3.1			BI764733	MTCH1	chr6	36936601	+	MTCH1	chr6	36936566	-
intron-intron	ENST00000340635	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000340635	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000360047	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000507116	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502484	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000546160	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000502575	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000358923	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503258	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000405755	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000317118	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000340635		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000360047		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000507116		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000502484		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000546160		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000502575		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000358923		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000503258		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000405755		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000317118		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000503947	ENST00000503947		ChiTaRS3.1			BF367933	PDE4D	chr5	59495558	-	PDE4D	chr5	59495678	+
intron-intron	ENST00000408442	ENST00000408442		ChiTaRS3.1			BG938623	MIR548G	chr3	99514637	-	MIR548G	chr3	99514745	+
3UTR-5UTR	ENST00000478951	ENST00000342669		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000585392		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000587367		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000588599		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000391932		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000478951	ENST00000588301		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000590212		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000478951	ENST00000587579		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000393917	ENST00000342669		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000585392		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000587367		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000588599		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000391932		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000393917	ENST00000588301		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000590212		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000393917	ENST00000587579		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000273368	ENST00000342669		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000585392		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000587367		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000588599		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000391932		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000273368	ENST00000588301		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000590212		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000273368	ENST00000587579		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000455401	ENST00000342669		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000585392		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000587367		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000588599		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000391932		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000455401	ENST00000588301		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000590212		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000455401	ENST00000587579		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000486460	ENST00000342669		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000585392		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000587367		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000588599		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000391932		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-5UTR	ENST00000486460	ENST00000588301		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000590212		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
3UTR-intron	ENST00000486460	ENST00000587579		ChiTaRS3.1			AI338353	TAGLN3	chr3	111732547	-	SNRPD2	chr19	46195198	-
intron-intron	ENST00000377093	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377093	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000263934	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377086	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000377083	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
3UTR-intron	ENST00000377081	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000482812		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000430044		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000452146		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000434507		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000415421		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000320311		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000465635	ENST00000422997		ChiTaRS3.1			AA776153	KIF1B	chr1	10440888	-	GALNT11	chr7	151810452	+
intron-intron	ENST00000246957	ENST00000541194		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000246957	ENST00000537928		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000246957	ENST00000378555		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000246957	ENST00000322985		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000246957	ENST00000465001		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000575671	ENST00000541194		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000575671	ENST00000537928		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000575671	ENST00000378555		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000575671	ENST00000322985		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000575671	ENST00000465001		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000538171	ENST00000541194		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000538171	ENST00000537928		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000538171	ENST00000378555		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000538171	ENST00000322985		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000538171	ENST00000465001		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000573872	ENST00000541194		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000573872	ENST00000537928		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000573872	ENST00000378555		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000573872	ENST00000322985		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
intron-intron	ENST00000573872	ENST00000465001		ChiTaRS3.1			BF820713	TRAP1	chr16	3713489	+	PODXL	chr7	131193709	+
5CDS-intron	ENST00000348697	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000348697	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000402984	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000262722	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
5CDS-intron	ENST00000327858	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000442170	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000340923	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000348697		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000402984		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000262722		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000327858		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000442170		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000340923		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-intron	ENST00000476366	ENST00000476366		ChiTaRS3.1			BE929893	FBLN1	chr22	45996311	-	FBLN1	chr22	45970426	+
intron-3UTR	ENST00000278823	ENST00000466801		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000278823	ENST00000409321		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000278823	ENST00000409115		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000278823	ENST00000341369		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000278823	ENST00000409683		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000278823	ENST00000410064		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000466801		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000409321		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000409115		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000341369		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000409683		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000524902	ENST00000410064		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000466801		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000409321		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000409115		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000341369		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000409683		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
intron-3UTR	ENST00000527204	ENST00000410064		ChiTaRS3.1			BF541543	MTA2	chr11	62361236	-	PTMA	chr2	232576100	+
3UTR-3CDS	ENST00000341901	ENST00000519716		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
3UTR-3CDS	ENST00000341901	ENST00000252773		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
3UTR-3CDS	ENST00000341901	ENST00000428389		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
3UTR-3CDS	ENST00000341901	ENST00000551649		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
3UTR-3CDS	ENST00000341901	ENST00000552293		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
3UTR-3CDS	ENST00000341901	ENST00000550896		ChiTaRS3.1			M85703	SBK1	chr16	28335049	+	UNC13A	chr19	17735664	-
intron-intron	ENST00000379825	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379825	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379825	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379825	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379825	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000309615	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000309615	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000309615	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000309615	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000309615	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000397172	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000397172	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000397172	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000397172	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000397172	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000379817	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379817	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379817	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379817	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379817	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000436040	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000436040	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000436040	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000436040	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000436040	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000379819	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379819	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379819	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379819	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379819	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000468275	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000468275	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000468275	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000468275	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000468275	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000463596	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000463596	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000463596	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000463596	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000463596	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000476858	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000476858	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000476858	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000476858	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000476858	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000379813	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379813	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379813	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379813	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000379813	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000473270	ENST00000484157		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000473270	ENST00000303343		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000473270	ENST00000368404		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000473270	ENST00000368401		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-3UTR	ENST00000473270	ENST00000368405		ChiTaRS3.1			AW630763	APTX	chr9	32975657	-	SLC50A1	chr1	155111221	+
intron-intron	ENST00000372391	ENST00000515852		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000372391	ENST00000506817		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-3UTR	ENST00000372391	ENST00000379982		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000372391	ENST00000504179		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000372388	ENST00000515852		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000372388	ENST00000506817		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-3UTR	ENST00000372388	ENST00000379982		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000372388	ENST00000504179		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000459739	ENST00000515852		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000459739	ENST00000506817		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-3UTR	ENST00000459739	ENST00000379982		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
intron-intron	ENST00000459739	ENST00000504179		ChiTaRS3.1			BQ367403	DLG5	chr10	79565457	+	RHOBTB3	chr5	95129724	+
In-frame	ENST00000261769	ENST00000261769		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
In-frame	ENST00000261769	ENST00000422392		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
5CDS-3UTR	ENST00000261769	ENST00000562836		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
intron-3CDS	ENST00000422392	ENST00000261769		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
intron-3CDS	ENST00000422392	ENST00000422392		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
intron-3UTR	ENST00000422392	ENST00000562836		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
3UTR-3CDS	ENST00000562836	ENST00000261769		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
3UTR-3CDS	ENST00000562836	ENST00000422392		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
3UTR-3UTR	ENST00000562836	ENST00000562836		ChiTaRS3.1			BF155173	CDH1	chr16	68847242	-	CDH1	chr16	68844170	+
intron-5UTR	ENST00000430702	ENST00000289004		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000430702	ENST00000543163		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000430702	ENST00000543869		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-5UTR	ENST00000394020	ENST00000289004		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000394020	ENST00000543163		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000394020	ENST00000543869		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-5UTR	ENST00000257527	ENST00000289004		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000257527	ENST00000543163		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000257527	ENST00000543869		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-5UTR	ENST00000517905	ENST00000289004		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000517905	ENST00000543163		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
intron-intron	ENST00000517905	ENST00000543869		ChiTaRS3.1			CD614163	ADAM19	chr5	156907969	+	HPD	chr12	122296745	-
5CDS-5UTR	ENST00000392213	ENST00000406164		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000392213	ENST00000406824		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000392213	ENST00000339837		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000392213	ENST00000413939		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000392213	ENST00000296202		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000392213	ENST00000511444		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000392213	ENST00000512391		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000392213	ENST00000514703		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000392213	ENST00000507242		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000406164		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000406824		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000339837		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000413939		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000296202		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000361922	ENST00000511444		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000361922	ENST00000512391		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000361922	ENST00000514703		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000361922	ENST00000507242		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000406164		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000406824		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000339837		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000413939		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000296202		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000597035	ENST00000511444		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-5UTR	ENST00000597035	ENST00000512391		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000597035	ENST00000514703		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
5CDS-intron	ENST00000597035	ENST00000507242		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000406164		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000406824		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000339837		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000413939		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000296202		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000537831	ENST00000511444		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000537831	ENST00000512391		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000537831	ENST00000514703		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000537831	ENST00000507242		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000406164		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000406824		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000339837		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000413939		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000296202		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000593348	ENST00000511444		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-5UTR	ENST00000593348	ENST00000512391		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000593348	ENST00000514703		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
intron-intron	ENST00000593348	ENST00000507242		ChiTaRS3.1			BM544763	MAG	chr19	35786353	+	NMNAT3	chr3	139396595	-
3UTR-intron	ENST00000499762	ENST00000381070		ChiTaRS3.1			AI114533	A2M-AS1	chr12	9220308	-	CWC27	chr5	64266608	-
3UTR-intron	ENST00000499762	ENST00000508024		ChiTaRS3.1			AI114533	A2M-AS1	chr12	9220308	-	CWC27	chr5	64266608	-
3UTR-intron	ENST00000499762	ENST00000545000		ChiTaRS3.1			AI114533	A2M-AS1	chr12	9220308	-	CWC27	chr5	64266608	-
3UTR-intron	ENST00000369817	ENST00000274364		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000369817	ENST00000379730		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000369817	ENST00000396234		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000369817	ENST00000502745		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000369817	ENST00000508410		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000479366	ENST00000274364		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000479366	ENST00000379730		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000479366	ENST00000396234		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000479366	ENST00000502745		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000479366	ENST00000508410		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000424325	ENST00000274364		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000424325	ENST00000379730		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000424325	ENST00000396234		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000424325	ENST00000502745		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000424325	ENST00000508410		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000406022	ENST00000274364		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000406022	ENST00000379730		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000406022	ENST00000396234		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000406022	ENST00000502745		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
3UTR-intron	ENST00000406022	ENST00000508410		ChiTaRS3.1			AI499133	RPL10	chrX	153629200	-	IQGAP2	chr5	75716022	-
intron-intron	ENST00000322217	ENST00000353383		ChiTaRS3.1			BG992883	MYPOP	chr19	46403681	-	RAI1	chr17	17663283	+
intron-intron	ENST00000322217	ENST00000489697		ChiTaRS3.1			BG992883	MYPOP	chr19	46403681	-	RAI1	chr17	17663283	+
intron-intron	ENST00000322217	ENST00000261641		ChiTaRS3.1			BG992883	MYPOP	chr19	46403681	-	RAI1	chr17	17663283	+
Frame-shit	ENST00000360319	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000360319	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000360319	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000360319	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000360319	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000360319	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000422373	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000422373	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000422373	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000422373	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000422373	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000422373	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000369850	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000369850	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000369850	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000369850	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000369850	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000369850	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000369856	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000369856	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000369856	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000369856	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000369856	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000369856	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000344736	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000344736	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
Frame-shit	ENST00000344736	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000344736	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000344736	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
5CDS-intron	ENST00000344736	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000498491	ENST00000360319		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000498491	ENST00000422373		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000498491	ENST00000369850		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000498491	ENST00000369856		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000498491	ENST00000344736		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-intron	ENST00000498491	ENST00000498491		ChiTaRS3.1			BF733973	FLNA	chrX	153592626	-	FLNA	chrX	153594562	-
intron-3CDS	ENST00000396472	ENST00000396472		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3CDS	ENST00000396472	ENST00000382406		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3CDS	ENST00000396472	ENST00000280987		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3UTR	ENST00000396472	ENST00000554052		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3CDS	ENST00000382406	ENST00000396472		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3CDS	ENST00000382406	ENST00000382406		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3CDS	ENST00000382406	ENST00000280987		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
intron-3UTR	ENST00000382406	ENST00000554052		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
Frame-shit	ENST00000280987	ENST00000396472		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
Frame-shit	ENST00000280987	ENST00000382406		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
Frame-shit	ENST00000280987	ENST00000280987		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
5CDS-3UTR	ENST00000280987	ENST00000554052		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
3UTR-3CDS	ENST00000554052	ENST00000396472		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
3UTR-3CDS	ENST00000554052	ENST00000382406		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
3UTR-3CDS	ENST00000554052	ENST00000280987		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
3UTR-3UTR	ENST00000554052	ENST00000554052		ChiTaRS3.1			N50523	FAM177A1	chr14	35515710	-	FAM177A1	chr14	35515804	+
3UTR-3UTR	ENST00000380155	ENST00000222248		ChiTaRS3.1			BM690623	SYAP1	chrX	16780931	+	SLC5A5	chr19	18005291	+
intron-3UTR	ENST00000495743	ENST00000222248		ChiTaRS3.1			BM690623	SYAP1	chrX	16780931	+	SLC5A5	chr19	18005291	+
intron-intron	ENST00000384838	ENST00000464615		ChiTaRS3.1			DA292433	LINC00461	chr5	87976718	-	WBSCR22	chr7	73134004	-
intron-intron	ENST00000384838	ENST00000265758		ChiTaRS3.1			DA292433	LINC00461	chr5	87976718	-	WBSCR22	chr7	73134004	-
intron-intron	ENST00000384838	ENST00000423166		ChiTaRS3.1			DA292433	LINC00461	chr5	87976718	-	WBSCR22	chr7	73134004	-
intron-intron	ENST00000384838	ENST00000423497		ChiTaRS3.1			DA292433	LINC00461	chr5	87976718	-	WBSCR22	chr7	73134004	-
intron-3UTR	ENST00000367188	ENST00000367188		ChiTaRS3.1			CV574393	PPP1R15B	chr1	204372694	+	PPP1R15B	chr1	204373181	-
3UTR-3UTR	ENST00000344256	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000344256	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000344256	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000344256	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000344256	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000344256	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000379598	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000379598	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000379598	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000379598	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000379598	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000379598	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000467519	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000467519	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000467519	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000467519	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000467519	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000467519	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000245960	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000245960	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000245960	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000245960	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000245960	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000245960	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000439880	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000439880	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000439880	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000439880	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-3UTR	ENST00000439880	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000439880	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000340833	ENST00000344256		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000340833	ENST00000379598		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000340833	ENST00000467519		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000340833	ENST00000245960		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-3UTR	ENST00000340833	ENST00000439880		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
intron-intron	ENST00000340833	ENST00000340833		ChiTaRS3.1			BM666733	CDC25B	chr20	3785904	-	CDC25B	chr20	3785902	+
3UTR-intron	ENST00000403633	ENST00000257897		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000403633	ENST00000547588		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000222969	ENST00000257897		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000222969	ENST00000547588		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000456893	ENST00000257897		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000456893	ENST00000547588		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000431419	ENST00000257897		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
3UTR-intron	ENST00000431419	ENST00000547588		ChiTaRS3.1			AI300543	BUD31	chr7	99017083	-	AGAP2	chr12	58124013	+
intron-3UTR	ENST00000367225	ENST00000366987		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-3UTR	ENST00000367225	ENST00000341491		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000367225	ENST00000366985		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-3UTR	ENST00000367225	ENST00000492118		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000367225	ENST00000336937		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000367225	ENST00000366983		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-3UTR	ENST00000206262	ENST00000366987		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-3UTR	ENST00000206262	ENST00000341491		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000206262	ENST00000366985		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-3UTR	ENST00000206262	ENST00000492118		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000206262	ENST00000336937		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
intron-intron	ENST00000206262	ENST00000366983		ChiTaRS3.1			CF552913	RGS17	chr6	153418053	-	ATF3	chr1	212793902	+
3UTR-intron	ENST00000462284	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000462284	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000356290	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000540827	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000258149	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
3UTR-intron	ENST00000428863	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393412	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000258148	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544561	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393410	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000393413	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000517852	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000545204	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000350057	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000360430	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000299252	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000348801	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000478070	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000347370		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000349431		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000339385		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000348298		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000400929		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000360466		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000400930		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000544125	ENST00000491779		ChiTaRS3.1			AW439303	MDM2	chr12	69236110	+	UBE2J2	chr1	1192372	+
intron-intron	ENST00000481781	ENST00000463876		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-intron	ENST00000481781	ENST00000334661		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-intron	ENST00000481781	ENST00000479619		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-intron	ENST00000397270	ENST00000463876		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-intron	ENST00000397270	ENST00000334661		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-intron	ENST00000397270	ENST00000479619		ChiTaRS3.1			CN404773	INS-IGF2	chr11	2153887	-	PLCD1	chr3	38246281	-
intron-3UTR	ENST00000265107	ENST00000253039		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
intron-intron	ENST00000265107	ENST00000460032		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
intron-3UTR	ENST00000504564	ENST00000253039		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
intron-intron	ENST00000504564	ENST00000460032		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
intron-3UTR	ENST00000510699	ENST00000253039		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
intron-intron	ENST00000510699	ENST00000460032		ChiTaRS3.1			BM969453	WDR70	chr5	37389308	+	EIF2S3	chrX	24095251	-
3UTR-intron	ENST00000368003	ENST00000452313		ChiTaRS3.1			AW628133	UFC1	chr1	161128577	-	NPIPB7	chr16	28975536	-
intron-intron	ENST00000473766	ENST00000452313		ChiTaRS3.1			AW628133	UFC1	chr1	161128577	-	NPIPB7	chr16	28975536	-
intron-5UTR	ENST00000558480	ENST00000313899		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000558480	ENST00000353341		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000558480	ENST00000543098		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000558480	ENST00000352301		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000558480	ENST00000508119		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000558480	ENST00000541060		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000419573	ENST00000313899		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000419573	ENST00000353341		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000419573	ENST00000543098		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000419573	ENST00000352301		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000419573	ENST00000508119		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000419573	ENST00000541060		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000560334	ENST00000313899		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000560334	ENST00000353341		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000560334	ENST00000543098		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000560334	ENST00000352301		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000560334	ENST00000508119		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000560334	ENST00000541060		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000394745	ENST00000313899		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000394745	ENST00000353341		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000394745	ENST00000543098		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000394745	ENST00000352301		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-intron	ENST00000394745	ENST00000508119		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
intron-5UTR	ENST00000394745	ENST00000541060		ChiTaRS3.1			DA845763	RASGRF1	chr15	79296310	-	HNRNPD	chr4	83295087	-
5CDS-3UTR	ENST00000296755	ENST00000296755		ChiTaRS3.1			DB382833	MAP1B	chr5	71490889	-	MAP1B	chr5	71501186	-
5CDS-intron	ENST00000296755	ENST00000504183		ChiTaRS3.1			DB382833	MAP1B	chr5	71490889	-	MAP1B	chr5	71501186	-
intron-3UTR	ENST00000504183	ENST00000296755		ChiTaRS3.1			DB382833	MAP1B	chr5	71490889	-	MAP1B	chr5	71501186	-
intron-intron	ENST00000504183	ENST00000504183		ChiTaRS3.1			DB382833	MAP1B	chr5	71490889	-	MAP1B	chr5	71501186	-
intron-5UTR	ENST00000265174	ENST00000368575		ChiTaRS3.1			DA811913	PAPSS1	chr4	108603212	-	RAB13	chr1	153958815	-
intron-intron	ENST00000265174	ENST00000462680		ChiTaRS3.1			DA811913	PAPSS1	chr4	108603212	-	RAB13	chr1	153958815	-
intron-5UTR	ENST00000511304	ENST00000368575		ChiTaRS3.1			DA811913	PAPSS1	chr4	108603212	-	RAB13	chr1	153958815	-
intron-intron	ENST00000511304	ENST00000462680		ChiTaRS3.1			DA811913	PAPSS1	chr4	108603212	-	RAB13	chr1	153958815	-
intron-3CDS	ENST00000371657	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371657	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371657	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371657	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371657	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000396059	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000396059	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000396059	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000396059	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000396059	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371674	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371674	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371674	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371674	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371674	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371677	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371677	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371677	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371677	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000371677	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000340309	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000340309	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000340309	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000340309	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000340309	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000420027	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000420027	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000420027	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000420027	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000420027	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000415862	ENST00000316403		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000415862	ENST00000546343		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000415862	ENST00000560366		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000415862	ENST00000405140		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-3CDS	ENST00000415862	ENST00000523500		ChiTaRS3.1			BE830293	UBE2V1	chr20	48698287	+	CLU	chr8	27463917	+
intron-intron	ENST00000481739	ENST00000535741		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000481739	ENST00000510413		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000481739	ENST00000503716		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000481739	ENST00000357115		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000481739	ENST00000507224		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-intron	ENST00000356384	ENST00000535741		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-intron	ENST00000356384	ENST00000510413		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-intron	ENST00000356384	ENST00000503716		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-intron	ENST00000356384	ENST00000357115		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-intron	ENST00000356384	ENST00000507224		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000540193	ENST00000535741		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000540193	ENST00000510413		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000540193	ENST00000503716		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000540193	ENST00000357115		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
intron-intron	ENST00000540193	ENST00000507224		ChiTaRS3.1			BM978893	RXRA	chr9	137332343	-	LRBA	chr4	151283588	+
3UTR-3UTR	ENST00000280154	ENST00000280154		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
3UTR-3UTR	ENST00000280154	ENST00000393104		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
3UTR-intron	ENST00000280154	ENST00000481353		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
3UTR-3UTR	ENST00000393104	ENST00000280154		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
3UTR-3UTR	ENST00000393104	ENST00000393104		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
3UTR-intron	ENST00000393104	ENST00000481353		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
intron-3UTR	ENST00000481353	ENST00000280154		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
intron-3UTR	ENST00000481353	ENST00000393104		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
intron-intron	ENST00000481353	ENST00000481353		ChiTaRS3.1			AA742923	PDCD4	chr10	112658418	+	PDCD4	chr10	112658363	-
intron-3UTR	ENST00000392975	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392975	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000392975	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392975	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392975	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000392975	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000360793	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000360793	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000360793	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000360793	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000360793	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000360793	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000584031	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000584031	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000584031	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000584031	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000584031	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000584031	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392976	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392976	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000392976	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392976	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000392976	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000392976	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582297	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582297	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582297	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582297	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582297	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582297	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581573	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581573	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000581573	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581573	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581573	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000581573	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000448884	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000448884	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000448884	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000448884	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000448884	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000448884	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582034	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582034	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582034	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582034	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582034	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582034	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000542042	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000542042	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000542042	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000542042	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000542042	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000542042	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581163	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581163	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000581163	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581163	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000581163	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000581163	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582997	ENST00000360289		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582997	ENST00000448642		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582997	ENST00000404387		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582997	ENST00000298649		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-3UTR	ENST00000582997	ENST00000359426		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
intron-intron	ENST00000582997	ENST00000494253		ChiTaRS3.1			BI003573	CYB561	chr17	61510161	-	HK1	chr10	71161028	-
3UTR-intron	ENST00000324849	ENST00000370119		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
3UTR-3UTR	ENST00000324849	ENST00000347652		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
3UTR-3UTR	ENST00000324849	ENST00000294728		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
3UTR-3UTR	ENST00000324849	ENST00000370115		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-intron	ENST00000324815	ENST00000370119		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000324815	ENST00000347652		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000324815	ENST00000294728		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000324815	ENST00000370115		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-intron	ENST00000521829	ENST00000370119		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521829	ENST00000347652		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521829	ENST00000294728		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521829	ENST00000370115		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-intron	ENST00000521005	ENST00000370119		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521005	ENST00000347652		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521005	ENST00000294728		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521005	ENST00000370115		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-intron	ENST00000521162	ENST00000370119		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521162	ENST00000347652		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521162	ENST00000294728		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
intron-3UTR	ENST00000521162	ENST00000370115		ChiTaRS3.1			AI276643	VPS37A	chr8	17152987	-	VCAM1	chr1	101204216	-
5UTR-3CDS	ENST00000260379	ENST00000283195		ChiTaRS3.1			AY170823	RPLP1	chr15	69745176	-	RANBP2	chr2	109389349	+
5UTR-3CDS	ENST00000357790	ENST00000283195		ChiTaRS3.1			AY170823	RPLP1	chr15	69745176	-	RANBP2	chr2	109389349	+
intron-3CDS	ENST00000560274	ENST00000283195		ChiTaRS3.1			AY170823	RPLP1	chr15	69745176	-	RANBP2	chr2	109389349	+
intron-3CDS	ENST00000506866	ENST00000316623		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000506866	ENST00000561429		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000506866	ENST00000560355		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-3CDS	ENST00000274031	ENST00000316623		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000274031	ENST00000561429		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000274031	ENST00000560355		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-3CDS	ENST00000404104	ENST00000316623		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000404104	ENST00000561429		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000404104	ENST00000560355		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-3CDS	ENST00000406354	ENST00000316623		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000406354	ENST00000561429		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000406354	ENST00000560355		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-3CDS	ENST00000608958	ENST00000316623		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000608958	ENST00000561429		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
intron-intron	ENST00000608958	ENST00000560355		ChiTaRS3.1			AW609923	SETD7	chr4	140450347	+	FBN1	chr15	48800841	+
Frame-shit	ENST00000339865	ENST00000339865		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000539466		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000527733		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000339865	ENST00000399455		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000339865	ENST00000305481		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-3CDS	ENST00000539466	ENST00000339865		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000539466		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000527733		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-5UTR	ENST00000539466	ENST00000399455		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5UTR-intron	ENST00000539466	ENST00000305481		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
Frame-shit	ENST00000527733	ENST00000339865		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000539466		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000527733		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000527733	ENST00000399455		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000527733	ENST00000305481		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
Frame-shit	ENST00000399455	ENST00000339865		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000539466		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000527733		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-5UTR	ENST00000399455	ENST00000399455		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
5CDS-intron	ENST00000399455	ENST00000305481		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-3CDS	ENST00000305481	ENST00000339865		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000539466		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000527733		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-5UTR	ENST00000305481	ENST00000399455		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-intron	ENST00000305481	ENST00000305481		ChiTaRS3.1			AW389693	USP47	chr11	11951662	+	USP47	chr11	11951639	-
intron-intron	ENST00000358026	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000358026	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000358026	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000358026	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000358026	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000344626	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000344626	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000344626	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000344626	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000344626	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000429416	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000429416	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000429416	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000429416	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000429416	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000541122	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000541122	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000541122	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000541122	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000541122	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000589677	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000589677	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000589677	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000589677	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000589677	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000444061	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000444061	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000444061	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000444061	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000444061	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000590574	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000590574	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000590574	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000590574	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000590574	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000413806	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000413806	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000413806	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000413806	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000413806	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000450717	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000450717	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000450717	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000450717	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000450717	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000538456	ENST00000318217		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000538456	ENST00000394649		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000538456	ENST00000579584		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000538456	ENST00000584232		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-intron	ENST00000538456	ENST00000583621		ChiTaRS3.1			BG982203	SMARCA4	chr19	11149594	+	MYO1D	chr17	31191720	+
intron-5UTR	ENST00000332129	ENST00000260970		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000332129	ENST00000409714		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000332129	ENST00000462903		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000332129	ENST00000448752		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-intron	ENST00000332129	ENST00000482772		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000360529	ENST00000260970		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000360529	ENST00000409714		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000360529	ENST00000462903		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000360529	ENST00000448752		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-intron	ENST00000360529	ENST00000482772		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000461742	ENST00000260970		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000461742	ENST00000409714		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000461742	ENST00000462903		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000461742	ENST00000448752		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-intron	ENST00000461742	ENST00000482772		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000422435	ENST00000260970		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000422435	ENST00000409714		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000422435	ENST00000462903		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-5UTR	ENST00000422435	ENST00000448752		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
intron-intron	ENST00000422435	ENST00000482772		ChiTaRS3.1			U40763	KIF21B	chr1	200938883	+	PPIG	chr2	170440954	+
Frame-shit	ENST00000379802	ENST00000379802		ChiTaRS3.1			EL594873	DSP	chr6	7583152	+	DSP	chr6	7582934	+
In-frame	ENST00000379802	ENST00000418664		ChiTaRS3.1			EL594873	DSP	chr6	7583152	+	DSP	chr6	7582934	+
In-frame	ENST00000418664	ENST00000379802		ChiTaRS3.1			EL594873	DSP	chr6	7583152	+	DSP	chr6	7582934	+
Frame-shit	ENST00000418664	ENST00000418664		ChiTaRS3.1			EL594873	DSP	chr6	7583152	+	DSP	chr6	7582934	+
5CDS-intron	ENST00000394258	ENST00000394249		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000394258	ENST00000361919		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000394258	ENST00000361188		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000394258	ENST00000442656		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000394258	ENST00000556129		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000555155	ENST00000394249		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000555155	ENST00000361919		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000555155	ENST00000361188		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000555155	ENST00000442656		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000555155	ENST00000556129		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
3UTR-intron	ENST00000556774	ENST00000394249		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
3UTR-intron	ENST00000556774	ENST00000361919		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
3UTR-intron	ENST00000556774	ENST00000361188		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
3UTR-intron	ENST00000556774	ENST00000442656		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
3UTR-intron	ENST00000556774	ENST00000556129		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000556618	ENST00000394249		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000556618	ENST00000361919		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000556618	ENST00000361188		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000556618	ENST00000442656		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
5CDS-intron	ENST00000556618	ENST00000556129		ChiTaRS3.1			AW003923	RCCD1	chr15	91503154	-	PRC1	chr15	91531093	-
intron-intron	ENST00000439616	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000443864	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000447398	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000449767	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000444676	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000222673	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000543843	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000459672	ENST00000563843		ChiTaRS3.1			BF367733	OGDH	chr7	44676407	+	PAN3-AS1	chr13	28713182	+
intron-intron	ENST00000404234	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000404234	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000529632	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000360929	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000248933	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000343706	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000402979	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000403121	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000411842	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000372262		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000537909		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
intron-intron	ENST00000494013	ENST00000474438		ChiTaRS3.1			BF056923	SEZ6L	chr22	26753238	-	CDH22	chr20	44906957	+
3UTR-intron	ENST00000259526	ENST00000331397		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000382896		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000537580		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000362096		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000329134		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000538878		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000540140		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000545955		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000474365		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
3UTR-intron	ENST00000259526	ENST00000382893		ChiTaRS3.1			BE705923	NOV	chr8	120435634	+	UTY	chrY	15507683	+
5UTR-3UTR	ENST00000295897	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
5UTR-intron	ENST00000295897	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-3UTR	ENST00000415165	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000415165	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-3UTR	ENST00000503124	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000503124	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-3UTR	ENST00000509063	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000509063	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-3UTR	ENST00000401494	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000401494	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-3UTR	ENST00000505649	ENST00000282588		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000505649	ENST00000504086		ChiTaRS3.1			AI174733	ALB	chr4	74270008	-	ITGA1	chr5	52251892	+
intron-intron	ENST00000402881	ENST00000402881		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000402881	ENST00000478342		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-3UTR	ENST00000402881	ENST00000325301		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000402881	ENST00000404569		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000478342	ENST00000402881		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000478342	ENST00000478342		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-3UTR	ENST00000478342	ENST00000325301		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000478342	ENST00000404569		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
3UTR-intron	ENST00000325301	ENST00000402881		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
3UTR-intron	ENST00000325301	ENST00000478342		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
3UTR-3UTR	ENST00000325301	ENST00000325301		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
3UTR-intron	ENST00000325301	ENST00000404569		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000404569	ENST00000402881		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000404569	ENST00000478342		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-3UTR	ENST00000404569	ENST00000325301		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000404569	ENST00000404569		ChiTaRS3.1			BI086913	MIEF1	chr22	39912733	-	MIEF1	chr22	39912749	+
intron-intron	ENST00000534312	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000534312	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000395850	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000533403	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000351554	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000415002	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000445143	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000426650	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000437761	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000527577	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000534312		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000395850		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000533403		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000351554		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000415002		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000445143		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000426650		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000437761		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000527577		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000528700	ENST00000528700		ChiTaRS3.1			BF509963	CD59	chr11	33727962	-	CD59	chr11	33728451	+
intron-intron	ENST00000261647	ENST00000261647		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000261647	ENST00000486880		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000261647	ENST00000497842		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000486880	ENST00000261647		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000486880	ENST00000486880		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000486880	ENST00000497842		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000497842	ENST00000261647		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000497842	ENST00000486880		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000497842	ENST00000497842		ChiTaRS3.1			AK130773	TTC19	chr17	15922370	+	TTC19	chr17	15920083	+
intron-intron	ENST00000379162	ENST00000379162		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000379162	ENST00000441463		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000379162	ENST00000493226		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000441463	ENST00000379162		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000441463	ENST00000441463		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000441463	ENST00000493226		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000493226	ENST00000379162		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000493226	ENST00000441463		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-intron	ENST00000493226	ENST00000493226		ChiTaRS3.1			BU674003	PDK3	chrX	24568381	-	PDK3	chrX	24568157	+
intron-3CDS	ENST00000334983	ENST00000360319		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000334983	ENST00000422373		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000334983	ENST00000369850		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000334983	ENST00000369856		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000334983	ENST00000344736		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-intron	ENST00000334983	ENST00000498491		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000349718	ENST00000360319		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000349718	ENST00000422373		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000349718	ENST00000369850		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000349718	ENST00000369856		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-3CDS	ENST00000349718	ENST00000344736		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-intron	ENST00000349718	ENST00000498491		ChiTaRS3.1			BF094113	CMTM7	chr3	32475001	-	FLNA	chrX	153580770	+
intron-intron	ENST00000439951	ENST00000439951		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000313733		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000358053		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000439951	ENST00000471817		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000439951		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000313733		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000358053		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000313733	ENST00000471817		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000439951		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000313733		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000358053		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000358053	ENST00000471817		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000439951		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000313733		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000358053		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-intron	ENST00000471817	ENST00000471817		ChiTaRS3.1			CV393393	OSBPL2	chr20	60860187	+	OSBPL2	chr20	60842270	+
intron-3CDS	ENST00000305798	ENST00000454682		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000550952		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000356769		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000552540		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000393891		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000548563		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000305798	ENST00000546392		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-intron	ENST00000305798	ENST00000551793		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000454682		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000550952		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000356769		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000552540		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000393891		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000548563		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000505184	ENST00000546392		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-intron	ENST00000505184	ENST00000551793		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000454682		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000550952		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000356769		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000552540		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000393891		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000548563		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-3CDS	ENST00000509168	ENST00000546392		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-intron	ENST00000509168	ENST00000551793		ChiTaRS3.1			BF155703	TSPAN5	chr4	99491353	-	NACA	chr12	57107432	-
intron-5UTR	ENST00000370313	ENST00000370313		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370313	ENST00000370316		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370313	ENST00000466885		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370313	ENST00000370307		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-5UTR	ENST00000370316	ENST00000370313		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370316	ENST00000370316		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370316	ENST00000466885		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370316	ENST00000370307		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-5UTR	ENST00000466885	ENST00000370313		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000466885	ENST00000370316		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000466885	ENST00000466885		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000466885	ENST00000370307		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-5UTR	ENST00000370307	ENST00000370313		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370307	ENST00000370316		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370307	ENST00000466885		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000370307	ENST00000370307		ChiTaRS3.1			BP349453	NKAIN4	chr20	61872766	-	NKAIN4	chr20	61884607	-
intron-intron	ENST00000592554	ENST00000592554		ChiTaRS3.1			BG679473	FAM20A	chr17	66580186	-	FAM20A	chr17	66590294	-
intron-intron	ENST00000592554	ENST00000226094		ChiTaRS3.1			BG679473	FAM20A	chr17	66580186	-	FAM20A	chr17	66590294	-
intron-intron	ENST00000226094	ENST00000592554		ChiTaRS3.1			BG679473	FAM20A	chr17	66580186	-	FAM20A	chr17	66590294	-
intron-intron	ENST00000226094	ENST00000226094		ChiTaRS3.1			BG679473	FAM20A	chr17	66580186	-	FAM20A	chr17	66590294	-
intron-intron	ENST00000380725	ENST00000377242		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000380725	ENST00000377252		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000380725	ENST00000377238		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000414822	ENST00000377242		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000414822	ENST00000377252		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000414822	ENST00000377238		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000440480	ENST00000377242		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000440480	ENST00000377252		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000440480	ENST00000377238		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000313407	ENST00000377242		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000313407	ENST00000377252		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000313407	ENST00000377238		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000430149	ENST00000377242		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000430149	ENST00000377252		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
intron-intron	ENST00000430149	ENST00000377238		ChiTaRS3.1			AI028513	CDKN1C	chr11	2904945	+	PLXDC2	chr10	20238644	-
3UTR-intron	ENST00000355078	ENST00000355078		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000355078	ENST00000302763		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000355078	ENST00000518825		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000355078	ENST00000520400		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000355078	ENST00000540387		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000302763	ENST00000355078		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000302763	ENST00000302763		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000302763	ENST00000518825		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000302763	ENST00000520400		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000302763	ENST00000540387		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000518825	ENST00000355078		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000518825	ENST00000302763		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000518825	ENST00000518825		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000518825	ENST00000520400		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000518825	ENST00000540387		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-intron	ENST00000520400	ENST00000355078		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-3UTR	ENST00000520400	ENST00000302763		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-3UTR	ENST00000520400	ENST00000518825		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-intron	ENST00000520400	ENST00000520400		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-3UTR	ENST00000520400	ENST00000540387		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000540387	ENST00000355078		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000540387	ENST00000302763		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000540387	ENST00000518825		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-intron	ENST00000540387	ENST00000520400		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
3UTR-3UTR	ENST00000540387	ENST00000540387		ChiTaRS3.1			BE713143	CTNNA1	chr5	138269882	+	CTNNA1	chr5	138269915	-
intron-3UTR	ENST00000376736	ENST00000261267		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
intron-intron	ENST00000376736	ENST00000549690		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
intron-intron	ENST00000376736	ENST00000548839		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
intron-3UTR	ENST00000479197	ENST00000261267		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
intron-intron	ENST00000479197	ENST00000549690		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
intron-intron	ENST00000479197	ENST00000548839		ChiTaRS3.1			BC015473	RFK	chr9	79001916	-	LYZ	chr12	69747527	+
3UTR-3UTR	ENST00000534336	ENST00000540900		ChiTaRS3.1			BG426103	MALAT1	chr11	65268005	+	NSRP1	chr17	28511822	+
3UTR-intron	ENST00000534336	ENST00000584423		ChiTaRS3.1			BG426103	MALAT1	chr11	65268005	+	NSRP1	chr17	28511822	+
3UTR-intron	ENST00000534336	ENST00000247026		ChiTaRS3.1			BG426103	MALAT1	chr11	65268005	+	NSRP1	chr17	28511822	+
3UTR-intron	ENST00000534336	ENST00000479218		ChiTaRS3.1			BG426103	MALAT1	chr11	65268005	+	NSRP1	chr17	28511822	+
intron-intron	ENST00000288398	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000288398	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000358278	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560445	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000403994	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000357980	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559556	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000559397	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000267996	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000334895	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
3UTR-intron	ENST00000404484	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000560959	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000559281	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000554144		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000420433		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000556376		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000381260		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000337881		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000605395		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000508121		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000503639		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000553379		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000381255		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000317745		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000555760		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000317516	ENST00000556614		ChiTaRS3.1			T28253	TPM1	chr15	63363855	+	HOPX	chr4	57516008	-
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AY288767	AFF1	chr4	88012888	+	KMT2A	chr11	118357698	+
intron-intron	ENST00000359019	ENST00000359019		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-3UTR	ENST00000359019	ENST00000334822		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-3UTR	ENST00000359019	ENST00000426126		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-intron	ENST00000359019	ENST00000550789		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-intron	ENST00000334822	ENST00000359019		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-3UTR	ENST00000334822	ENST00000334822		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-3UTR	ENST00000334822	ENST00000426126		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-intron	ENST00000334822	ENST00000550789		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-intron	ENST00000426126	ENST00000359019		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-3UTR	ENST00000426126	ENST00000334822		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-3UTR	ENST00000426126	ENST00000426126		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
3UTR-intron	ENST00000426126	ENST00000550789		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-intron	ENST00000550789	ENST00000359019		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-3UTR	ENST00000550789	ENST00000334822		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-3UTR	ENST00000550789	ENST00000426126		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-intron	ENST00000550789	ENST00000550789		ChiTaRS3.1			BF343613	ZDHHC17	chr12	77247097	-	ZDHHC17	chr12	77247190	+
intron-intron	ENST00000407228	ENST00000356401		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
intron-intron	ENST00000407228	ENST00000449376		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
intron-intron	ENST00000407228	ENST00000490095		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
intron-intron	ENST00000219746	ENST00000356401		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
intron-intron	ENST00000219746	ENST00000449376		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
intron-intron	ENST00000219746	ENST00000490095		ChiTaRS3.1			BX098323	TOX3	chr16	52517747	-	ARIH2	chr3	48971240	+
3UTR-3CDS	ENST00000373635	ENST00000373635		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-3CDS	ENST00000373635	ENST00000308696		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-3CDS	ENST00000373635	ENST00000409643		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-intron	ENST00000373635	ENST00000488354		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-3CDS	ENST00000308696	ENST00000373635		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-3CDS	ENST00000308696	ENST00000308696		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-3CDS	ENST00000308696	ENST00000409643		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
3UTR-intron	ENST00000308696	ENST00000488354		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
Frame-shit	ENST00000409643	ENST00000373635		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
Frame-shit	ENST00000409643	ENST00000308696		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
Frame-shit	ENST00000409643	ENST00000409643		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
5CDS-intron	ENST00000409643	ENST00000488354		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
intron-3CDS	ENST00000488354	ENST00000373635		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
intron-3CDS	ENST00000488354	ENST00000308696		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
intron-3CDS	ENST00000488354	ENST00000409643		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
intron-intron	ENST00000488354	ENST00000488354		ChiTaRS3.1			DA454373	PSMD1	chr2	232035428	+	PSMD1	chr2	231927240	+
intron-intron	ENST00000332687	ENST00000529415		ChiTaRS3.1			BM678243	RLIM	chrX	73805493	+	LRRC24	chr8	145752100	-
intron-intron	ENST00000332687	ENST00000533758		ChiTaRS3.1			BM678243	RLIM	chrX	73805493	+	LRRC24	chr8	145752100	-
intron-intron	ENST00000349225	ENST00000529415		ChiTaRS3.1			BM678243	RLIM	chrX	73805493	+	LRRC24	chr8	145752100	-
intron-intron	ENST00000349225	ENST00000533758		ChiTaRS3.1			BM678243	RLIM	chrX	73805493	+	LRRC24	chr8	145752100	-
intron-intron	ENST00000422057	ENST00000422057		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000422057	ENST00000317318		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000422057	ENST00000423270		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000422057	ENST00000559447		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000317318	ENST00000422057		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000317318	ENST00000317318		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000317318	ENST00000423270		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000317318	ENST00000559447		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000423270	ENST00000422057		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000423270	ENST00000317318		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000423270	ENST00000423270		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000423270	ENST00000559447		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000559447	ENST00000422057		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-intron	ENST00000559447	ENST00000317318		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000559447	ENST00000423270		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
intron-3UTR	ENST00000559447	ENST00000559447		ChiTaRS3.1			BG257043	RFX7	chr15	56383425	+	RFX7	chr15	56383374	-
3UTR-3UTR	ENST00000380668	ENST00000380668		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
3UTR-intron	ENST00000380668	ENST00000398491		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
3UTR-intron	ENST00000380668	ENST00000489404		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-3UTR	ENST00000398491	ENST00000380668		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-intron	ENST00000398491	ENST00000398491		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-intron	ENST00000398491	ENST00000489404		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-3UTR	ENST00000489404	ENST00000380668		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-intron	ENST00000489404	ENST00000398491		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-intron	ENST00000489404	ENST00000489404		ChiTaRS3.1			BE767033	PRPS2	chrX	12841738	-	PRPS2	chrX	12841610	+
intron-3CDS	ENST00000416426	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000416426	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000416426	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000284073	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000284073	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000284073	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000322684	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000322684	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000322684	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000442934	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000442934	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000442934	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579180	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579180	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579180	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579505	ENST00000357702		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579505	ENST00000259235		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
intron-3CDS	ENST00000579505	ENST00000259234		ChiTaRS3.1			BF359353	MSI2	chr17	55514040	+	SAP130	chr2	128707751	+
5CDS-5UTR	ENST00000324262	ENST00000324262		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000324262	ENST00000579847		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000324262	ENST00000580229		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-5UTR	ENST00000324262	ENST00000324301		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-5UTR	ENST00000579847	ENST00000324262		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000579847	ENST00000579847		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000579847	ENST00000580229		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-5UTR	ENST00000579847	ENST00000324301		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
intron-5UTR	ENST00000580229	ENST00000324262		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
intron-intron	ENST00000580229	ENST00000579847		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
intron-intron	ENST00000580229	ENST00000580229		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
intron-5UTR	ENST00000580229	ENST00000324301		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-5UTR	ENST00000324301	ENST00000324262		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000324301	ENST00000579847		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-intron	ENST00000324301	ENST00000580229		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
5CDS-5UTR	ENST00000324301	ENST00000324301		ChiTaRS3.1			BF846333	CNDP2	chr18	72178184	+	CNDP2	chr18	72167146	+
intron-intron	ENST00000390168	ENST00000390168		ChiTaRS3.1			AW938763	H19	chr11	2018510	-	H19	chr11	2016466	+
intron-3UTR	ENST00000404233	ENST00000371348		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000404233	ENST00000371344		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000404233	ENST00000234831		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000404233	ENST00000371341		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000404233	ENST00000470395		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000404233	ENST00000371337		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000529972	ENST00000371348		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000529972	ENST00000371344		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000529972	ENST00000234831		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000529972	ENST00000371341		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000529972	ENST00000470395		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000529972	ENST00000371337		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000525859	ENST00000371348		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000525859	ENST00000371344		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000525859	ENST00000234831		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000525859	ENST00000371341		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000525859	ENST00000470395		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000525859	ENST00000371337		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000543287	ENST00000371348		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000543287	ENST00000371344		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-3UTR	ENST00000543287	ENST00000234831		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000543287	ENST00000371341		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000543287	ENST00000470395		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
intron-intron	ENST00000543287	ENST00000371337		ChiTaRS3.1			BM311763	HYOU1	chr11	118915041	+	TMEM59	chr1	54497488	+
5CDS-intron	ENST00000335762	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000335762	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000335762	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399655	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399655	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399655	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000480911	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000480911	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000480911	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399644	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399644	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399644	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000344100	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000344100	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000344100	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399638	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399638	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399638	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399629	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399629	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399629	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399597	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399597	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399597	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000327702	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000327702	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000327702	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399621	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399621	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399621	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399649	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399649	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399649	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399637	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399637	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399637	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000402845	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000402845	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000402845	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399591	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399591	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399591	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399641	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399641	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399641	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000347598	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000347598	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000347598	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399606	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399606	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399606	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399595	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399595	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399595	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399601	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399601	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399601	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399603	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399603	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399603	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399634	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399634	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399634	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399617	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399617	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000399617	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000406454	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000406454	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
5CDS-intron	ENST00000406454	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
intron-intron	ENST00000491104	ENST00000555545		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
intron-intron	ENST00000491104	ENST00000261245		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
intron-intron	ENST00000491104	ENST00000539616		ChiTaRS3.1			DA692923	CACNA1C	chr12	2162778	+	MNAT1	chr14	61346430	+
intron-3CDS	ENST00000361813	ENST00000266070		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000395343		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000395340		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000395335		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000370371		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000370368		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000354665		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000370366		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000361813	ENST00000266071		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000266070		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000395343		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000395340		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000395335		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000370371		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000370368		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000354665		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000370366		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000368267	ENST00000266071		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000266070		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000395343		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000395340		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000395335		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000370371		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000370368		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000354665		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000370366		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-3CDS	ENST00000489907	ENST00000266071		ChiTaRS3.1			BQ335493	SMG5	chr1	156242151	-	DIDO1	chr20	61541209	-
intron-intron	ENST00000389838	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
intron-intron	ENST00000389838	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000452765	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000442312	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000435136	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000511747	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000503393	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
5CDS-intron	ENST00000356331	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000389838		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000452765		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000442312		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000435136		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000511747		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000503393		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000356331		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-intron	ENST00000515183	ENST00000515183		ChiTaRS3.1			BI009363	SH3BP2	chr4	2829032	-	SH3BP2	chr4	2826796	+
3UTR-3UTR	ENST00000344420	ENST00000344420		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
3UTR-3UTR	ENST00000344420	ENST00000416475		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
3UTR-intron	ENST00000344420	ENST00000482746		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-3UTR	ENST00000416475	ENST00000344420		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-3UTR	ENST00000416475	ENST00000416475		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-intron	ENST00000416475	ENST00000482746		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-3UTR	ENST00000482746	ENST00000344420		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-3UTR	ENST00000482746	ENST00000416475		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
intron-intron	ENST00000482746	ENST00000482746		ChiTaRS3.1			AV727283	SLC35F6	chr2	27003728	+	SLC35F6	chr2	27001454	+
3UTR-3CDS	ENST00000382533	ENST00000382533		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
3UTR-3CDS	ENST00000382533	ENST00000607003		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
3UTR-intron	ENST00000382533	ENST00000485646		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
3UTR-3CDS	ENST00000607003	ENST00000382533		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
3UTR-3CDS	ENST00000607003	ENST00000607003		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
3UTR-intron	ENST00000607003	ENST00000485646		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
intron-3CDS	ENST00000485646	ENST00000382533		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
intron-3CDS	ENST00000485646	ENST00000607003		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
intron-intron	ENST00000485646	ENST00000485646		ChiTaRS3.1			AW975353	SAP18	chr13	21721494	+	SAP18	chr13	21720980	-
intron-3CDS	ENST00000330720	ENST00000330720		ChiTaRS3.1			CN300933	KDELR1	chr19	48893731	+	KDELR1	chr19	48892959	-
intron-3CDS	ENST00000330720	ENST00000597017		ChiTaRS3.1			CN300933	KDELR1	chr19	48893731	+	KDELR1	chr19	48892959	-
intron-3CDS	ENST00000597017	ENST00000330720		ChiTaRS3.1			CN300933	KDELR1	chr19	48893731	+	KDELR1	chr19	48892959	-
intron-3CDS	ENST00000597017	ENST00000597017		ChiTaRS3.1			CN300933	KDELR1	chr19	48893731	+	KDELR1	chr19	48892959	-
intron-intron	ENST00000421797	ENST00000421797		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000421797	ENST00000429546		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-3UTR	ENST00000421797	ENST00000352689		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000421797	ENST00000498778		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000429546	ENST00000421797		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000429546	ENST00000429546		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-3UTR	ENST00000429546	ENST00000352689		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000429546	ENST00000498778		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
3UTR-intron	ENST00000352689	ENST00000421797		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
3UTR-intron	ENST00000352689	ENST00000429546		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
3UTR-3UTR	ENST00000352689	ENST00000352689		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
3UTR-intron	ENST00000352689	ENST00000498778		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000498778	ENST00000421797		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000498778	ENST00000429546		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-3UTR	ENST00000498778	ENST00000352689		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
intron-intron	ENST00000498778	ENST00000498778		ChiTaRS3.1			BQ188123	MKLN1	chr7	131180685	-	MKLN1	chr7	131180749	+
Frame-shit	ENST00000374358	ENST00000374358		ChiTaRS3.1			BF352913	TMEM50A	chr1	25679404	+	TMEM50A	chr1	25669508	-
5CDS-3UTR	ENST00000374358	ENST00000480937		ChiTaRS3.1			BF352913	TMEM50A	chr1	25679404	+	TMEM50A	chr1	25669508	-
intron-3CDS	ENST00000480937	ENST00000374358		ChiTaRS3.1			BF352913	TMEM50A	chr1	25679404	+	TMEM50A	chr1	25669508	-
intron-3UTR	ENST00000480937	ENST00000480937		ChiTaRS3.1			BF352913	TMEM50A	chr1	25679404	+	TMEM50A	chr1	25669508	-
intron-intron	ENST00000444921	ENST00000444921		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000444921	ENST00000339582		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000444921	ENST00000358373		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000444921	ENST00000405249		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000444921	ENST00000480995		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000339582	ENST00000444921		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000339582	ENST00000339582		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000339582	ENST00000358373		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000339582	ENST00000405249		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000339582	ENST00000480995		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000358373	ENST00000444921		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000358373	ENST00000339582		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000358373	ENST00000358373		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000358373	ENST00000405249		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000358373	ENST00000480995		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000405249	ENST00000444921		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000405249	ENST00000339582		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000405249	ENST00000358373		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000405249	ENST00000405249		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000405249	ENST00000480995		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000480995	ENST00000444921		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000480995	ENST00000339582		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000480995	ENST00000358373		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000480995	ENST00000405249		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
intron-intron	ENST00000480995	ENST00000480995		ChiTaRS3.1			EL585323	GRM8	chr7	126861322	+	GRM8	chr7	126860910	-
3UTR-3CDS	ENST00000228136	ENST00000301761		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
3UTR-3UTR	ENST00000228136	ENST00000542074		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
3UTR-3UTR	ENST00000228136	ENST00000537782		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
3UTR-3UTR	ENST00000228136	ENST00000543265		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
3UTR-intron	ENST00000228136	ENST00000534878		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
Frame-shit	ENST00000422258	ENST00000301761		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
5CDS-3UTR	ENST00000422258	ENST00000542074		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
5CDS-3UTR	ENST00000422258	ENST00000537782		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
5CDS-3UTR	ENST00000422258	ENST00000543265		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
5CDS-intron	ENST00000422258	ENST00000534878		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3CDS	ENST00000527893	ENST00000301761		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000527893	ENST00000542074		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000527893	ENST00000537782		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000527893	ENST00000543265		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-intron	ENST00000527893	ENST00000534878		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3CDS	ENST00000525684	ENST00000301761		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000525684	ENST00000542074		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000525684	ENST00000537782		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-3UTR	ENST00000525684	ENST00000543265		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-intron	ENST00000525684	ENST00000534878		ChiTaRS3.1			H67313	C11orf58	chr11	16777430	+	SDHAF2	chr11	61213487	+
intron-intron	ENST00000543491	ENST00000578646		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000543491	ENST00000261537		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000509925	ENST00000578646		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000509925	ENST00000261537		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000361762	ENST00000578646		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000361762	ENST00000261537		ChiTaRS3.1			BX111823	PCDH7	chr4	30953872	-	MIB1	chr18	19341819	-
intron-intron	ENST00000560302	ENST00000560302		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560302	ENST00000394518		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560302	ENST00000361243		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560302	ENST00000560579		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560302	ENST00000394510		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394518	ENST00000560302		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394518	ENST00000394518		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394518	ENST00000361243		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394518	ENST00000560579		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394518	ENST00000394510		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000361243	ENST00000560302		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000361243	ENST00000394518		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000361243	ENST00000361243		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000361243	ENST00000560579		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000361243	ENST00000394510		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560579	ENST00000560302		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560579	ENST00000394518		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560579	ENST00000361243		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560579	ENST00000560579		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000560579	ENST00000394510		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394510	ENST00000560302		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394510	ENST00000394518		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394510	ENST00000361243		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394510	ENST00000560579		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-intron	ENST00000394510	ENST00000394510		ChiTaRS3.1			AW847003	AKAP13	chr15	85989432	-	AKAP13	chr15	85989414	+
intron-3UTR	ENST00000572467	ENST00000231004		ChiTaRS3.1			AI168173	CORO7-PAM16	chr16	4433255	-	LOX	chr5	121401239	+
intron-intron	ENST00000572467	ENST00000513319		ChiTaRS3.1			AI168173	CORO7-PAM16	chr16	4433255	-	LOX	chr5	121401239	+
intron-3UTR	ENST00000572274	ENST00000231004		ChiTaRS3.1			AI168173	CORO7-PAM16	chr16	4433255	-	LOX	chr5	121401239	+
intron-intron	ENST00000572274	ENST00000513319		ChiTaRS3.1			AI168173	CORO7-PAM16	chr16	4433255	-	LOX	chr5	121401239	+
intron-intron	ENST00000174618	ENST00000368911		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000323817		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000413605		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000174618	ENST00000497709		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000368911		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000323817		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000413605		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575374	ENST00000497709		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000368911		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000323817		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000413605		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000575394	ENST00000497709		ChiTaRS3.1			BF591193	MNT	chr17	2292774	-	CDK19	chr6	111043990	-
intron-intron	ENST00000331272	ENST00000369626		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000331272	ENST00000538576		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000331272	ENST00000433570		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000331272	ENST00000478835		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000470093	ENST00000369626		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000470093	ENST00000538576		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000470093	ENST00000433570		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-intron	ENST00000470093	ENST00000478835		ChiTaRS3.1			BI050753	FBXW4	chr10	103387585	+	SLC16A1	chr1	113489319	-
intron-3CDS	ENST00000234170	ENST00000372979		ChiTaRS3.1			AW372223	CEBPZ	chr2	37440933	+	ECD	chr10	74896568	+
intron-3CDS	ENST00000234170	ENST00000454759		ChiTaRS3.1			AW372223	CEBPZ	chr2	37440933	+	ECD	chr10	74896568	+
intron-3CDS	ENST00000234170	ENST00000430082		ChiTaRS3.1			AW372223	CEBPZ	chr2	37440933	+	ECD	chr10	74896568	+
intron-intron	ENST00000234170	ENST00000610256		ChiTaRS3.1			AW372223	CEBPZ	chr2	37440933	+	ECD	chr10	74896568	+
3UTR-intron	ENST00000347330	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000347330	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000347330	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000413209	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000413209	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000413209	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000338641	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000338641	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000338641	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403435	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403435	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403435	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000361452	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000361452	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000361452	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403999	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403999	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000403999	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000334961	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000334961	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000334961	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000353887	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000353887	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000353887	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361166	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361166	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361166	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000397789	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000397789	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000397789	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361676	ENST00000540746		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361676	ENST00000544216		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
intron-intron	ENST00000361676	ENST00000433627		ChiTaRS3.1			AI760783	NF2	chr22	30094240	-	LSM14A	chr19	34684058	-
3UTR-intron	ENST00000417037	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000417037	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000417037	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000396334	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000396334	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000424893	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000424893	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000495303	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000495303	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-intron	ENST00000443433	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
3UTR-3UTR	ENST00000443433	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000434513		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000361221		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000452522		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000375415		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-intron	ENST00000481122	ENST00000375420		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000469726		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000375408		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
intron-3UTR	ENST00000481122	ENST00000167825		ChiTaRS3.1			BE161373	MYD88	chr3	38182836	-	ARHGEF10L	chr1	18021736	-
5CDS-intron	ENST00000326266	ENST00000326266		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000326266	ENST00000574549		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000326266	ENST00000575576		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000326266	ENST00000253952		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000574549	ENST00000326266		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000574549	ENST00000574549		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000574549	ENST00000575576		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000574549	ENST00000253952		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000575576	ENST00000326266		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000575576	ENST00000574549		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000575576	ENST00000575576		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000575576	ENST00000253952		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000253952	ENST00000326266		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000253952	ENST00000574549		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000253952	ENST00000575576		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
5CDS-intron	ENST00000253952	ENST00000253952		ChiTaRS3.1			BG959463	THOC6	chr16	3075979	-	THOC6	chr16	3076779	-
intron-intron	ENST00000408881	ENST00000408881		ChiTaRS3.1			BM919493	MIR1256	chr10	74128114	+	MIR1256	chr10	74128080	-
3UTR-3UTR	ENST00000297323	ENST00000297323		ChiTaRS3.1			AU252813	ADCY1	chr7	45758918	+	ADCY1	chr7	45757167	+
3UTR-intron	ENST00000297323	ENST00000432715		ChiTaRS3.1			AU252813	ADCY1	chr7	45758918	+	ADCY1	chr7	45757167	+
intron-3UTR	ENST00000432715	ENST00000297323		ChiTaRS3.1			AU252813	ADCY1	chr7	45758918	+	ADCY1	chr7	45757167	+
intron-intron	ENST00000432715	ENST00000432715		ChiTaRS3.1			AU252813	ADCY1	chr7	45758918	+	ADCY1	chr7	45757167	+
intron-intron	ENST00000522695	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522695	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524300	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000523558	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521210	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000355780	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000519961	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521727	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521451	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522509	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000517542	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000524104	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000522962	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522695		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000524300		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000523558		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521210		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000355780		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000519961		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521727		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521451		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522509		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000517542		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000524104		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000522962		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-intron	ENST00000521419	ENST00000521419		ChiTaRS3.1			BE143523	STAU2	chr8	74391938	+	STAU2	chr8	74394214	-
intron-3CDS	ENST00000372259	ENST00000372422		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000372259	ENST00000506469		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000372257	ENST00000372422		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000372257	ENST00000506469		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000537474	ENST00000372422		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000537474	ENST00000506469		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000495828	ENST00000372422		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-3CDS	ENST00000495828	ENST00000506469		ChiTaRS3.1			BI051573	ERI3	chr1	44762423	-	YIPF3	chr6	43480836	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BI036653	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
In-frame	ENST00000280527	ENST00000339208		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000346661		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000345615		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000502449		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000591288		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000394378		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
In-frame	ENST00000280527	ENST00000585472		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
5CDS-intron	ENST00000280527	ENST00000588194		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000339208		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000346661		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000345615		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000502449		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000591288		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000394378		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-3CDS	ENST00000473403	ENST00000585472		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-intron	ENST00000473403	ENST00000588194		ChiTaRS3.1			BG013273	CRIM1	chr2	36691731	+	SYNRG	chr17	35902508	+
intron-intron	ENST00000379031	ENST00000414749		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000379031	ENST00000429400		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000379031	ENST00000395189		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000379031	ENST00000313375		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000379031	ENST00000354613		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000379031	ENST00000434326		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000414749		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000429400		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000395189		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000313375		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000354613		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000470520	ENST00000434326		ChiTaRS3.1			AI739073	PUSL1	chr1	1247203	+	MLXIPL	chr7	73014062	+
intron-intron	ENST00000342228	ENST00000342228		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000342228	ENST00000520262		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000342228	ENST00000520179		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000342228	ENST00000523340		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520262	ENST00000342228		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520262	ENST00000520262		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520262	ENST00000520179		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520262	ENST00000523340		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520179	ENST00000342228		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520179	ENST00000520262		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520179	ENST00000520179		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000520179	ENST00000523340		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000523340	ENST00000342228		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000523340	ENST00000520262		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000523340	ENST00000520179		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000523340	ENST00000523340		ChiTaRS3.1			AA665033	SLC20A2	chr8	42384498	-	SLC20A2	chr8	42384640	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AJ408950	AFF1	chr4	87979861	+	KMT2A	chr11	118355304	+
intron-intron	ENST00000426496	ENST00000217109		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000426496	ENST00000493039		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000392078	ENST00000217109		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000392078	ENST00000493039		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000476522	ENST00000217109		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000476522	ENST00000493039		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000367742	ENST00000217109		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000367742	ENST00000493039		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000338920	ENST00000217109		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
intron-intron	ENST00000338920	ENST00000493039		ChiTaRS3.1			AW003943	PRRC2C	chr1	171560452	+	CSTF1	chr20	54968937	+
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			AF272373	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000362042	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000362042	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000362042	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000362042	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000362042	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000585291	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000585291	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000585291	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000585291	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000585291	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000357480	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000357480	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000357480	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000357480	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000357480	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000361665	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000361665	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000361665	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000361665	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000361665	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-intron	ENST00000579481	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-intron	ENST00000579481	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-intron	ENST00000579481	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-intron	ENST00000579481	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-3UTR	ENST00000579481	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000582155	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000582155	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000582155	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000582155	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000582155	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000583378	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000583378	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000583378	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000583378	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000583378	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000536222	ENST00000545802		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000536222	ENST00000546076		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000536222	ENST00000544427		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-intron	ENST00000536222	ENST00000535215		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
5CDS-3UTR	ENST00000536222	ENST00000261177		ChiTaRS3.1			T12033	NFE2L1	chr17	46136861	-	TSPAN11	chr12	31147877	+
intron-intron	ENST00000406516	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000406516	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000444929	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000444929	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000331728	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000331728	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000333611	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000333611	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000340552	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000340552	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000467301	ENST00000421419		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
intron-intron	ENST00000467301	ENST00000377264		ChiTaRS3.1			AW363833	LIMK2	chr22	31661573	-	ATG2A	chr11	64666112	+
Frame-shit	ENST00000310118	ENST00000310118		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
Frame-shit	ENST00000310118	ENST00000435761		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
Frame-shit	ENST00000310118	ENST00000439383		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
5CDS-3UTR	ENST00000310118	ENST00000459910		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000435761	ENST00000310118		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000435761	ENST00000435761		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000435761	ENST00000439383		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3UTR	ENST00000435761	ENST00000459910		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000439383	ENST00000310118		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000439383	ENST00000435761		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3CDS	ENST00000439383	ENST00000439383		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-3UTR	ENST00000439383	ENST00000459910		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
3UTR-3CDS	ENST00000459910	ENST00000310118		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
3UTR-3CDS	ENST00000459910	ENST00000435761		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
3UTR-3CDS	ENST00000459910	ENST00000439383		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
3UTR-3UTR	ENST00000459910	ENST00000459910		ChiTaRS3.1			BE003023	PSMD2	chr3	184018176	+	PSMD2	chr3	184019685	-
intron-5UTR	ENST00000321505	ENST00000388962		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-5UTR	ENST00000321505	ENST00000550948		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-intron	ENST00000321505	ENST00000228463		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-5UTR	ENST00000389726	ENST00000388962		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-5UTR	ENST00000389726	ENST00000550948		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-intron	ENST00000389726	ENST00000228463		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-5UTR	ENST00000265654	ENST00000388962		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-5UTR	ENST00000265654	ENST00000550948		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-intron	ENST00000265654	ENST00000228463		ChiTaRS3.1			DA087163	KIAA1549L	chr11	33671252	+	SELPLG	chr12	109027660	-
intron-intron	ENST00000549578	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000549578	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000549578	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000360579	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000360579	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000360579	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000552130	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000552130	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000552130	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000447578	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000447578	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000447578	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000546588	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000546588	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000546588	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000549970	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000549970	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000549970	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000551655	ENST00000317178		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000551655	ENST00000431353		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-intron	ENST00000551655	ENST00000489376		ChiTaRS3.1			AI219743	VPS29	chr12	110938713	+	ZNF776	chr19	58203793	-
intron-3CDS	ENST00000536668	ENST00000503238		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000536668	ENST00000358350		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000536668	ENST00000537810		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000536668	ENST00000264319		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000536668	ENST00000507711		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000536668	ENST00000514783		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000536668	ENST00000507873		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000536668	ENST00000506685		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000544994	ENST00000503238		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000544994	ENST00000358350		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000544994	ENST00000537810		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000544994	ENST00000264319		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000544994	ENST00000507711		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000544994	ENST00000514783		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000544994	ENST00000507873		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000544994	ENST00000506685		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000228811	ENST00000503238		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000228811	ENST00000358350		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000228811	ENST00000537810		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000228811	ENST00000264319		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000228811	ENST00000507711		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000228811	ENST00000514783		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000228811	ENST00000507873		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000228811	ENST00000506685		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000540107	ENST00000503238		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000540107	ENST00000358350		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-3CDS	ENST00000540107	ENST00000537810		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000540107	ENST00000264319		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000540107	ENST00000507711		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000540107	ENST00000514783		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-5UTR	ENST00000540107	ENST00000507873		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000540107	ENST00000506685		ChiTaRS3.1			DB349523	PRR4	chr12	10999719	+	FRYL	chr4	48517226	+
intron-intron	ENST00000369825	ENST00000369825		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369811		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000369815		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000337003		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369825	ENST00000309579		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369825		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369811		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000369815		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000337003		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369811	ENST00000309579		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369825		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369811		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000369815		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000337003		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000369815	ENST00000309579		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369825		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369811		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000369815		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000337003		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000337003	ENST00000309579		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369825		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369811		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000369815		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000337003		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-intron	ENST00000309579	ENST00000309579		ChiTaRS3.1			AW860823	USMG5	chr10	105149355	-	USMG5	chr10	105150024	-
intron-3CDS	ENST00000520791	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000520791	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000523368	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000297565	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
3UTR-3CDS	ENST00000435298	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000522510	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000470487		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3CDS	ENST00000457907	ENST00000309027		ChiTaRS3.1			AW973843	OSR2	chr8	99964222	-	GOLIM4	chr3	167761209	+
intron-3UTR	ENST00000592554	ENST00000310298		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000592554	ENST00000557957		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000592554	ENST00000394553		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000592554	ENST00000339708		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000592554	ENST00000557819		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000310298		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000557957		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-3UTR	ENST00000226094	ENST00000394553		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000226094	ENST00000339708		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000226094	ENST00000557819		ChiTaRS3.1			W91923	FAM20A	chr17	66531346	+	PDE8A	chr15	85682185	-
intron-intron	ENST00000378572	ENST00000277551		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371372		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000277549		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371363		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371355		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371357		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000277550		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371367		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000545473		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-intron	ENST00000378572	ENST00000371365		ChiTaRS3.1			BF957293	PRPF18	chr10	13682864	-	CACNA1B	chr9	140973639	-
intron-3CDS	ENST00000409170	ENST00000478691		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-3CDS	ENST00000409170	ENST00000374616		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000476660		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000374612		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000302271		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000427764		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000606561		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-5UTR	ENST00000409170	ENST00000426846		ChiTaRS3.1			BI005433	RPL36A-HNRNPH2	chrX	100667704	-	HNRNPR	chr1	23637420	+
intron-3CDS	ENST00000296702	ENST00000296702		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-3CDS	ENST00000296702	ENST00000394421		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-intron	ENST00000296702	ENST00000509787		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-3CDS	ENST00000394421	ENST00000296702		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-3CDS	ENST00000394421	ENST00000394421		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-intron	ENST00000394421	ENST00000509787		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-3CDS	ENST00000509787	ENST00000296702		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-3CDS	ENST00000509787	ENST00000394421		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
intron-intron	ENST00000509787	ENST00000509787		ChiTaRS3.1			BU622083	TCERG1	chr5	145863102	-	TCERG1	chr5	145838785	+
3UTR-intron	ENST00000262493	ENST00000262493		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
3UTR-intron	ENST00000262493	ENST00000262494		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
3UTR-intron	ENST00000262493	ENST00000569295		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000262494	ENST00000262493		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000262494	ENST00000262494		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000262494	ENST00000569295		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000569295	ENST00000262493		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000569295	ENST00000262494		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-intron	ENST00000569295	ENST00000569295		ChiTaRS3.1			AW014453	GNAO1	chr16	56390199	-	GNAO1	chr16	56389963	+
intron-3UTR	ENST00000366603	ENST00000376387		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-intron	ENST00000366603	ENST00000463709		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-3UTR	ENST00000264183	ENST00000376387		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-intron	ENST00000264183	ENST00000463709		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-3UTR	ENST00000349213	ENST00000376387		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-intron	ENST00000349213	ENST00000463709		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-3UTR	ENST00000494543	ENST00000376387		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-intron	ENST00000494543	ENST00000463709		ChiTaRS3.1			BI032633	ARID4B	chr1	235397054	+	TM9SF2	chr13	100215311	-
intron-3UTR	ENST00000426335	ENST00000380607		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000426335	ENST00000467085		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000426335	ENST00000537391		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-3UTR	ENST00000524782	ENST00000380607		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000524782	ENST00000467085		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000524782	ENST00000537391		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-3UTR	ENST00000395449	ENST00000380607		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000395449	ENST00000467085		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000395449	ENST00000537391		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-3UTR	ENST00000319543	ENST00000380607		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000319543	ENST00000467085		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000319543	ENST00000537391		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-3UTR	ENST00000419701	ENST00000380607		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000419701	ENST00000467085		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-intron	ENST00000419701	ENST00000537391		ChiTaRS3.1			BG987713	ARFGAP2	chr11	47186135	+	SH3GL2	chr9	17797070	-
intron-3CDS	ENST00000588757	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000588757	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000588757	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000420359	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000420359	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000420359	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000449624	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000449624	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000449624	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000421097	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000421097	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-3CDS	ENST00000421097	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000590958	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000590958	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000590958	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000393818	ENST00000556468		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000393818	ENST00000253107		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
5UTR-3CDS	ENST00000393818	ENST00000393793		ChiTaRS3.1			CR739363	COASY	chr17	40714380	+	PPAN	chr19	10218787	+
intron-intron	ENST00000278947	ENST00000538966		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000278947	ENST00000361971		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000278947	ENST00000538543		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000278947	ENST00000538776		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000278947	ENST00000538282		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000278947	ENST00000485980		ChiTaRS3.1			DA098743	SCN2B	chr11	118047174	-	PLXNB3	chrX	153045117	+
intron-intron	ENST00000370557	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370557	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000327569	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000361648	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000460773	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000370543	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000370557		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000327569		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000361648		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000460773		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000370543		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
intron-intron	ENST00000359686	ENST00000359686		ChiTaRS3.1			BE082683	ATP11C	chrX	138824213	+	ATP11C	chrX	138823868	-
5CDS-intron	ENST00000503823	ENST00000503823		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503823	ENST00000504154		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503823	ENST00000273739		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503823	ENST00000503837		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503823	ENST00000509394		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000504154	ENST00000503823		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000504154	ENST00000504154		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000504154	ENST00000273739		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000504154	ENST00000503837		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000504154	ENST00000509394		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000273739	ENST00000503823		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000273739	ENST00000504154		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000273739	ENST00000273739		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000273739	ENST00000503837		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000273739	ENST00000509394		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503837	ENST00000503823		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503837	ENST00000504154		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503837	ENST00000273739		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503837	ENST00000503837		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
5CDS-intron	ENST00000503837	ENST00000509394		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000509394	ENST00000503823		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000509394	ENST00000504154		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000509394	ENST00000273739		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000509394	ENST00000503837		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000509394	ENST00000509394		ChiTaRS3.1			BF996463	SLIT2	chr4	20535269	+	SLIT2	chr4	20526791	-
intron-intron	ENST00000397843	ENST00000349714		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000359226		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000374384		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000374380		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000374385		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000374377		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000397556		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000407996		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000540457		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000542501		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000397554		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000397843	ENST00000491125		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000349714		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000359226		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000374384		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000374380		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000374385		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000374377		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000397556		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000407996		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000540457		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000542501		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000397554		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000356641	ENST00000491125		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000349714		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000359226		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000374384		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000374380		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000374385		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000374377		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000397556		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000407996		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000540457		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000542501		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000397554		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
intron-intron	ENST00000532993	ENST00000491125		ChiTaRS3.1			CV316623	ARHGEF12	chr11	120307684	+	UQCC1	chr20	33987215	-
5CDS-3UTR	ENST00000439590	ENST00000330149		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000439590	ENST00000347691		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-5UTR	ENST00000439590	ENST00000557764		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000311111	ENST00000330149		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000311111	ENST00000347691		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-5UTR	ENST00000311111	ENST00000557764		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000584577	ENST00000330149		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000584577	ENST00000347691		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-5UTR	ENST00000584577	ENST00000557764		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
intron-3UTR	ENST00000534490	ENST00000330149		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
intron-3UTR	ENST00000534490	ENST00000347691		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
intron-5UTR	ENST00000534490	ENST00000557764		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000533498	ENST00000330149		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-3UTR	ENST00000533498	ENST00000347691		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
5CDS-5UTR	ENST00000533498	ENST00000557764		ChiTaRS3.1			AA977713	RPL38	chr17	72205963	-	TRAPPC6B	chr14	39619329	+
intron-intron	ENST00000380338	ENST00000534358		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000389506		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000354520		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380338	ENST00000420751		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000534358		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000389506		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000354520		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000355930	ENST00000420751		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000534358		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000389506		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000354520		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000429426	ENST00000420751		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000534358		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000389506		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000354520		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000475957	ENST00000420751		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000534358		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000389506		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000354520		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000380321	ENST00000420751		ChiTaRS3.1			AY840550	MLLT3	chr9	20360029	+	KMT2A	chr11	118353560	-
intron-intron	ENST00000503492	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000503492	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000503492	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000503492	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000503492	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000503492	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000287008	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000287008	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000287008	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000287008	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000287008	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000287008	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000394536	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000394536	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000394536	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000394536	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000394536	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000394536	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000456271	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000456271	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000456271	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000456271	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000456271	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000456271	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000511044	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000511044	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000511044	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000511044	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000511044	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000511044	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000536585	ENST00000503492		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000536585	ENST00000287008		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000536585	ENST00000394536		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000536585	ENST00000456271		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000536585	ENST00000511044		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-5UTR	ENST00000536585	ENST00000536585		ChiTaRS3.1			BF997693	PCDH1	chr5	141244124	-	PCDH1	chr5	141243991	+
intron-intron	ENST00000544024	ENST00000409532		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000544024	ENST00000264107		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000544024	ENST00000343713		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000544024	ENST00000264106		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000544024	ENST00000375221		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000544024	ENST00000409080		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-intron	ENST00000423955	ENST00000409532		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000423955	ENST00000264107		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000423955	ENST00000343713		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000423955	ENST00000264106		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000423955	ENST00000375221		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000423955	ENST00000409080		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-intron	ENST00000293525	ENST00000409532		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000293525	ENST00000264107		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000293525	ENST00000343713		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000293525	ENST00000264106		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000293525	ENST00000375221		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-3UTR	ENST00000293525	ENST00000409080		ChiTaRS3.1			BF849223	KRT86	chr12	52650972	-	ITGA6	chr2	173370617	+
intron-intron	ENST00000374296	ENST00000434753		ChiTaRS3.1			AI861853	PAQR7	chr1	26188267	+	XIAP	chrX	123044603	-
intron-intron	ENST00000374296	ENST00000468691		ChiTaRS3.1			AI861853	PAQR7	chr1	26188267	+	XIAP	chrX	123044603	-
intron-3UTR	ENST00000374296	ENST00000371199		ChiTaRS3.1			AI861853	PAQR7	chr1	26188267	+	XIAP	chrX	123044603	-
intron-3UTR	ENST00000374296	ENST00000355640		ChiTaRS3.1			AI861853	PAQR7	chr1	26188267	+	XIAP	chrX	123044603	-
intron-intron	ENST00000519937	ENST00000381809		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000519937	ENST00000359883		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000519937	ENST00000447596		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000342375	ENST00000381809		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000342375	ENST00000359883		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000342375	ENST00000447596		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000393822	ENST00000381809		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000393822	ENST00000359883		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000393822	ENST00000447596		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000409383	ENST00000381809		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000409383	ENST00000359883		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-intron	ENST00000409383	ENST00000447596		ChiTaRS3.1			BF850323	SFTPB	chr2	85888881	+	AK3	chr9	4719366	-
intron-5UTR	ENST00000371743	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000371743	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000371743	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000450535	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000450535	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000450535	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000441722	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000441722	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000441722	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000417721	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000417721	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000417721	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000458653	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000458653	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000458653	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000326677	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000326677	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000326677	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000428008	ENST00000352940		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-5UTR	ENST00000428008	ENST00000358007		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000428008	ENST00000392155		ChiTaRS3.1			DB242863	ZFAS1	chr20	47895558	+	DDX47	chr12	12966286	+
intron-intron	ENST00000316399	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000316399	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000396356	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000352083	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528252	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000527619	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000528429	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000316399		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000396356		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000352083		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000528252		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000527619		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000528429		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
intron-intron	ENST00000533658	ENST00000533658		ChiTaRS3.1			AF147423	SOX6	chr11	16219868	-	SOX6	chr11	16222435	-
3UTR-3CDS	ENST00000482253	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
3UTR-3CDS	ENST00000482253	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
3UTR-intron	ENST00000482253	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
3UTR-intron	ENST00000482253	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000609116	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000609116	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000609116	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000609116	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000370197	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000370197	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000370197	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000370197	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000370198	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000370198	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000370198	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000370198	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000426398	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
In-frame	ENST00000426398	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000426398	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5CDS-intron	ENST00000426398	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-3CDS	ENST00000394184	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-3CDS	ENST00000394184	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-intron	ENST00000394184	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-intron	ENST00000394184	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-3CDS	ENST00000541987	ENST00000406775		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-3CDS	ENST00000541987	ENST00000342771		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-intron	ENST00000541987	ENST00000403018		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
5UTR-intron	ENST00000541987	ENST00000489774		ChiTaRS3.1			DA721803	PTBP2	chr1	97189150	+	AUTS2	chr7	70240341	+
3UTR-intron	ENST00000602402	ENST00000342704		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000375279		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000344201		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000397798		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000346541		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000397800		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000492345		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000359606		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000491618		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
3UTR-intron	ENST00000602402	ENST00000543126		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000342704		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000375279		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000344201		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000397798		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000346541		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000397800		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000492345		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000359606		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000491618		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000376795	ENST00000543126		ChiTaRS3.1			BG992563	DNAJC3	chr13	96444658	-	CBFA2T2	chr20	32110101	+
intron-intron	ENST00000403396	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000403396	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000403396	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518235	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518235	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518235	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000520698	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000520698	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000520698	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000376931	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000376931	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000376931	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523267	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523267	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523267	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518219	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518219	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000518219	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523084	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523084	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000523084	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000292586	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000292586	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000292586	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000521333	ENST00000426726		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000521333	ENST00000590941		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000521333	ENST00000225441		ChiTaRS3.1			DA250813	C5orf45	chr5	179275157	-	RUNDC3A	chr17	42391285	+
intron-intron	ENST00000369252	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369252	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000533213	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000277895	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369266	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000392952	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000369253	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000369252		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000533213		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000277895		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000369266		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000392952		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000369253		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-intron	ENST00000477638	ENST00000477638		ChiTaRS3.1			R87703	ABLIM1	chr10	116325858	-	ABLIM1	chr10	116327681	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			CN263823	EEF2	chr19	3976672	+	EEF2	chr19	3976591	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			CN263823	EEF2	chr19	3976672	+	EEF2	chr19	3976591	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			CN263823	EEF2	chr19	3976672	+	EEF2	chr19	3976591	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			CN263823	EEF2	chr19	3976672	+	EEF2	chr19	3976591	-
intron-3UTR	ENST00000342362	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000342362	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000342362	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000342362	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000382002	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000382002	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000382002	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000382002	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000231423	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000231423	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000231423	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000231423	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000513753	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000513753	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000513753	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000513753	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000397391	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000397391	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000397391	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000397391	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000348262	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000348262	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000348262	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000348262	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000542609	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000542609	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000542609	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000542609	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000310101	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000310101	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000310101	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000310101	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000511486	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000511486	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000511486	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000511486	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000509934	ENST00000351018		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-3UTR	ENST00000509934	ENST00000396979		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000509934	ENST00000396978		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
intron-intron	ENST00000509934	ENST00000533217		ChiTaRS3.1			AW389483	PRLR	chr5	35093504	+	RHOG	chr11	3848610	-
In-frame	ENST00000238112	ENST00000238112		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
In-frame	ENST00000238112	ENST00000460593		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
5CDS-intron	ENST00000238112	ENST00000489403		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
In-frame	ENST00000460593	ENST00000238112		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
In-frame	ENST00000460593	ENST00000460593		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
5CDS-intron	ENST00000460593	ENST00000489403		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
intron-3CDS	ENST00000489403	ENST00000238112		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
intron-3CDS	ENST00000489403	ENST00000460593		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
intron-intron	ENST00000489403	ENST00000489403		ChiTaRS3.1			CB135523	CPSF3	chr2	9593113	-	CPSF3	chr2	9597081	+
intron-intron	ENST00000395146	ENST00000534358		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000395146	ENST00000389506		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000395146	ENST00000354520		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000395146	ENST00000420751		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000307808	ENST00000534358		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000307808	ENST00000389506		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000307808	ENST00000354520		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000307808	ENST00000420751		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000544085	ENST00000534358		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000544085	ENST00000389506		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000544085	ENST00000354520		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000544085	ENST00000420751		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000511996	ENST00000534358		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000511996	ENST00000389506		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000511996	ENST00000354520		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-intron	ENST00000511996	ENST00000420751		ChiTaRS3.1			AY288769	AFF1	chr4	87969718	+	KMT2A	chr11	118355457	+
intron-3CDS	ENST00000454189	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000454189	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000454189	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000454189	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000454189	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000454189	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000398361	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000316715	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000493677	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000355135	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000454189		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000398361		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000316715		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000493677		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000355135		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
intron-3CDS	ENST00000356942	ENST00000356942		ChiTaRS3.1			AU118413	GPM6B	chrX	13791123	-	GPM6B	chrX	13801596	-
3UTR-intron	ENST00000592432	ENST00000249806		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000565471		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000418702		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000566347		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000538696		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000564752		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
3UTR-intron	ENST00000592432	ENST00000569336		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000249806		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000565471		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000418702		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000566347		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000538696		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000564752		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000592014	ENST00000569336		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000249806		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000565471		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000418702		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000566347		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000538696		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000564752		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
intron-intron	ENST00000586148	ENST00000569336		ChiTaRS3.1			AA866153	PRCD	chr17	74549498	-	CLN6	chr15	68510262	+
In-frame	ENST00000334121	ENST00000334121		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
In-frame	ENST00000334121	ENST00000380918		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
5CDS-3UTR	ENST00000334121	ENST00000284041		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
In-frame	ENST00000380918	ENST00000334121		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
In-frame	ENST00000380918	ENST00000380918		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
5CDS-3UTR	ENST00000380918	ENST00000284041		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
3UTR-3CDS	ENST00000284041	ENST00000334121		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
3UTR-3CDS	ENST00000284041	ENST00000380918		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
3UTR-3UTR	ENST00000284041	ENST00000284041		ChiTaRS3.1			AI961243	SREK1	chr5	65466453	-	SREK1	chr5	65473432	-
3UTR-3UTR	ENST00000409257	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000409257	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-3UTR	ENST00000589256	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000589256	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-3UTR	ENST00000588800	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
5CDS-intron	ENST00000588800	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-3UTR	ENST00000591952	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000591952	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-3UTR	ENST00000327898	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000327898	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-3UTR	ENST00000586731	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000586731	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-3UTR	ENST00000589664	ENST00000340855		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000537071		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000541269		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000422081		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000370441		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000490775		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000370443		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000427113		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
3UTR-intron	ENST00000589664	ENST00000428056		ChiTaRS3.1			BX647783	AFMID	chr17	76203316	+	IDS	chrX	148560595	-
intron-intron	ENST00000309539	ENST00000455140		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000309539	ENST00000248070		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000309539	ENST00000535753		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000309539	ENST00000594975		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000309539	ENST00000602009		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000309539	ENST00000597937		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000455140		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000248070		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000535753		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000594975		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000602009		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000544577	ENST00000597937		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000455140		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000248070		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000535753		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000594975		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000602009		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000543993	ENST00000597937		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000455140		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000248070		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000535753		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000594975		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000602009		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000545927	ENST00000597937		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000455140		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000248070		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000535753		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000594975		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000602009		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000432556	ENST00000597937		ChiTaRS3.1			BF903953	OLR1	chr12	10323107	+	EPS15L1	chr19	16522911	+
intron-intron	ENST00000522212	ENST00000522212		ChiTaRS3.1			BF897903	TVP23C-CDRT4	chr17	15392059	-	TVP23C-CDRT4	chr17	15392292	+
intron-3CDS	ENST00000307790	ENST00000337147		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000367075		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000307790	ENST00000392177		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000307790	ENST00000476189		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000337147		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000367075		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000397771	ENST00000392177		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000397771	ENST00000476189		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000337147		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000367075		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000542393	ENST00000392177		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000542393	ENST00000476189		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000337147		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000367075		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-3CDS	ENST00000478812	ENST00000392177		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000478812	ENST00000476189		ChiTaRS3.1			BE140793	ASCC2	chr22	30188500	+	EZR	chr6	159191893	+
intron-intron	ENST00000468874	ENST00000263398		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000526025		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000449691		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000360158		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000415148		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000437706		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000433354		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000428726		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000526669		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000433892		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000278386		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000434472		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000352818		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000468874	ENST00000528922		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000263398		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000526025		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000449691		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000360158		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000415148		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000437706		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000433354		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000428726		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000526669		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000433892		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000278386		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000434472		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000352818		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
intron-intron	ENST00000542230	ENST00000528922		ChiTaRS3.1			AW935153	TMEM50B	chr21	34821880	+	CD44	chr11	35233263	+
3UTR-3UTR	ENST00000242719	ENST00000242719		ChiTaRS3.1			AI859563	RNF11	chr1	51738523	-	RNF11	chr1	51738161	+
3UTR-intron	ENST00000242719	ENST00000494873		ChiTaRS3.1			AI859563	RNF11	chr1	51738523	-	RNF11	chr1	51738161	+
intron-3UTR	ENST00000494873	ENST00000242719		ChiTaRS3.1			AI859563	RNF11	chr1	51738523	-	RNF11	chr1	51738161	+
intron-intron	ENST00000494873	ENST00000494873		ChiTaRS3.1			AI859563	RNF11	chr1	51738523	-	RNF11	chr1	51738161	+
intron-intron	ENST00000517296	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000517296	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000517296	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000517296	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389773	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389773	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389773	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389773	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389774	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389774	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389774	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000389774	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000336963	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000336963	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000336963	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000336963	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000356099	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000356099	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000356099	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000356099	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000469872	ENST00000360803		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000469872	ENST00000491635		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000469872	ENST00000538293		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000469872	ENST00000545048		ChiTaRS3.1			BF764003	ARHGAP8	chr22	45152268	-	GTPBP4	chr10	1056588	-
intron-intron	ENST00000356860	ENST00000356860		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356860	ENST00000356253		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356860	ENST00000423588		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356860	ENST00000464354		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356860	ENST00000535308		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356253	ENST00000356860		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356253	ENST00000356253		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356253	ENST00000423588		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356253	ENST00000464354		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000356253	ENST00000535308		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000423588	ENST00000356860		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000423588	ENST00000356253		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000423588	ENST00000423588		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000423588	ENST00000464354		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000423588	ENST00000535308		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000464354	ENST00000356860		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000464354	ENST00000356253		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000464354	ENST00000423588		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000464354	ENST00000464354		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000464354	ENST00000535308		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000535308	ENST00000356860		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000535308	ENST00000356253		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000535308	ENST00000423588		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000535308	ENST00000464354		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
intron-intron	ENST00000535308	ENST00000535308		ChiTaRS3.1			DW417283	CACNA2D1	chr7	81692674	-	CACNA2D1	chr7	81693779	-
3UTR-intron	ENST00000237623	ENST00000396024		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000237623	ENST00000451270		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000237623	ENST00000332680		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000237623	ENST00000421017		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000237623	ENST00000557937		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000395080	ENST00000396024		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000395080	ENST00000451270		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000395080	ENST00000332680		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000395080	ENST00000421017		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000395080	ENST00000557937		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000360804	ENST00000396024		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000360804	ENST00000451270		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000360804	ENST00000332680		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000360804	ENST00000421017		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000360804	ENST00000557937		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000509659	ENST00000396024		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000509659	ENST00000451270		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000509659	ENST00000332680		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000509659	ENST00000421017		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
3UTR-intron	ENST00000509659	ENST00000557937		ChiTaRS3.1			BQ314733	SPP1	chr4	88904055	+	ANXA2	chr15	60658036	-
intron-intron	ENST00000319622	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000319622	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565184	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000389093	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000335181	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568883	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000449901	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000565154	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000319622		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000565184		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000389093		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000335181		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000568883		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000449901		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000565154		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-intron	ENST00000568459	ENST00000568459		ChiTaRS3.1			BC001743	PKM	chr15	72495192	-	PKM	chr15	72498909	-
intron-3CDS	ENST00000261769	ENST00000245323		ChiTaRS3.1			BF819233	CDH1	chr16	68861834	-	EFNB2	chr13	107148179	-
intron-3CDS	ENST00000422392	ENST00000245323		ChiTaRS3.1			BF819233	CDH1	chr16	68861834	-	EFNB2	chr13	107148179	-
intron-3CDS	ENST00000562836	ENST00000245323		ChiTaRS3.1			BF819233	CDH1	chr16	68861834	-	EFNB2	chr13	107148179	-
intron-intron	ENST00000405709	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000405709	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000405709	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000405709	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000405709	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000405709	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000331762	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000452895	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000415362	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000447215	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000437687	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000489381	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000392272		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000368173		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000360089		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000359209		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000416935		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
intron-intron	ENST00000450877	ENST00000368172		ChiTaRS3.1			BG003223	IMMP2L	chr7	110434794	-	KIRREL	chr1	158064180	-
5CDS-intron	ENST00000260970	ENST00000274008		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000260970	ENST00000422835		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-intron	ENST00000409714	ENST00000274008		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000409714	ENST00000422835		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
intron-intron	ENST00000462903	ENST00000274008		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
intron-3UTR	ENST00000462903	ENST00000422835		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-intron	ENST00000448752	ENST00000274008		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5CDS-3UTR	ENST00000448752	ENST00000422835		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
3UTR-intron	ENST00000482772	ENST00000274008		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
3UTR-3UTR	ENST00000482772	ENST00000422835		ChiTaRS3.1			BU685323	PPIG	chr2	170492945	-	SPATA5	chr4	124023441	+
5UTR-3UTR	ENST00000339399	ENST00000531326		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
5UTR-5UTR	ENST00000339399	ENST00000392597		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
5UTR-5UTR	ENST00000339399	ENST00000351677		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
intron-3UTR	ENST00000473205	ENST00000531326		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
intron-5UTR	ENST00000473205	ENST00000392597		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
intron-5UTR	ENST00000473205	ENST00000351677		ChiTaRS3.1			BG826823	ANP32B	chr9	100745731	+	PTPN11	chr12	112856741	+
intron-intron	ENST00000405592	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405592	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406652	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000407270	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000406911	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000405094	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000404771		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000372440		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000372443		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000286628		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000286627		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000354353		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000404857		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000406533		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000484507		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000481070		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-intron	ENST00000472767	ENST00000480683		ChiTaRS3.1			M85843	MTA3	chr2	42952029	+	KCNMA1	chr10	78762955	-
intron-3UTR	ENST00000390548	ENST00000300784		ChiTaRS3.1			AI291863	IGHG1	chr22	23237932	-	FN3K	chr17	80708685	-
intron-intron	ENST00000390548	ENST00000572813		ChiTaRS3.1			AI291863	IGHG1	chr22	23237932	-	FN3K	chr17	80708685	-
intron-3CDS	ENST00000393810	ENST00000393810		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000495706		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000393812		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393810	ENST00000537814		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000393810	ENST00000538577		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000495706	ENST00000393810		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000495706		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000393812		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000495706	ENST00000537814		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000495706	ENST00000538577		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000393812	ENST00000393810		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000495706		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000393812		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000393812	ENST00000537814		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000393812	ENST00000538577		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000537814	ENST00000393810		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000495706		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000393812		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000537814	ENST00000537814		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000537814	ENST00000538577		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-3CDS	ENST00000538577	ENST00000393810		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000495706		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000393812		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000538577	ENST00000537814		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-5UTR	ENST00000538577	ENST00000538577		ChiTaRS3.1			DB500953	SLC35B2	chr6	44222214	-	SLC35B2	chr6	44224546	-
intron-intron	ENST00000264122	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000264122	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000407712	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000394027	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000403724	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000405772	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000537855		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000379096		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000518937		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000519303		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000517427		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000520527		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000448733		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000379097		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000545639	ENST00000523395		ChiTaRS3.1			BG982213	CBLB	chr3	105582093	-	TPD52	chr8	80961323	-
intron-intron	ENST00000458063	ENST00000458063		ChiTaRS3.1			BG389643	ZNF32-AS3	chr10	44139595	+	ZNF32-AS3	chr10	44139554	-
intron-intron	ENST00000280527	ENST00000319104		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000280527	ENST00000319073		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000280527	ENST00000534961		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000280527	ENST00000527424		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000280527	ENST00000526349		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000473403	ENST00000319104		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000473403	ENST00000319073		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000473403	ENST00000534961		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000473403	ENST00000527424		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-intron	ENST00000473403	ENST00000526349		ChiTaRS3.1			AF282861	CRIM1	chr2	36671230	+	RNF170	chr8	42740924	+
intron-3UTR	ENST00000370801	ENST00000369026		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000370801	ENST00000464132		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000370801	ENST00000307940		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-3UTR	ENST00000370798	ENST00000369026		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000370798	ENST00000464132		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000370798	ENST00000307940		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-3UTR	ENST00000476275	ENST00000369026		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000476275	ENST00000464132		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000476275	ENST00000307940		ChiTaRS3.1			AW802833	ZZZ3	chr1	78084053	-	MCL1	chr1	150548431	-
intron-intron	ENST00000316308	ENST00000505330		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000504381		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000507488		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000393221		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000533801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000510168		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000508532		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000504948		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000513801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000328560		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000428331		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000359644		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000422190		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000316308	ENST00000509150		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000505330		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000504381		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000507488		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000393221		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000533801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000510168		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000508532		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000504948		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000513801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000328560		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000428331		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000359644		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000422190		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000522749	ENST00000509150		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000505330		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000504381		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000507488		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000393221		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000533801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000510168		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000508532		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000504948		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000513801		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000328560		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000428331		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000359644		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000422190		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000520957	ENST00000509150		ChiTaRS3.1			BE698743	CLK4	chr5	178043544	+	ATP2C1	chr3	130699208	-
intron-intron	ENST00000299441	ENST00000252996		ChiTaRS3.1			BF222893	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000299441	ENST00000609045		ChiTaRS3.1			BF222893	DCHS1	chr11	6642732	+	TAF4	chr20	60575939	+
intron-intron	ENST00000423432	ENST00000222388		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-3UTR	ENST00000423432	ENST00000287844		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000423432	ENST00000473874		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000218432	ENST00000222388		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-3UTR	ENST00000218432	ENST00000287844		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000218432	ENST00000473874		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000373669	ENST00000222388		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-3UTR	ENST00000373669	ENST00000287844		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000373669	ENST00000473874		ChiTaRS3.1			BU858833	PIN4	chrX	71406391	+	ABCF2	chr7	150910681	-
intron-intron	ENST00000254508	ENST00000296812		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000281623		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000254508	ENST00000509134		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000296812		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000281623		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-intron	ENST00000485755	ENST00000509134		ChiTaRS3.1			BE073423	NUP210	chr3	13392920	+	FBXO4	chr5	41926160	+
intron-3CDS	ENST00000374647	ENST00000440884		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000416682		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000429436		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000303622		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000216288		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000553942		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000374647	ENST00000335102		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-intron	ENST00000374647	ENST00000561071		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000440884		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000416682		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000429436		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000303622		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000216288		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000553942		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000537196	ENST00000335102		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-intron	ENST00000537196	ENST00000561071		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000440884		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000416682		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000429436		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000303622		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000216288		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000553942		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-3CDS	ENST00000467959	ENST00000335102		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-intron	ENST00000467959	ENST00000561071		ChiTaRS3.1			BE073873	IKBKAP	chr9	111695768	+	MARK3	chr14	103932419	-
intron-intron	ENST00000396402	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396402	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000260433	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000396404	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000559878	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000405913	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000557858	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000396402		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000260433		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000396404		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000559878		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000405913		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000557858		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000492852	ENST00000492852		ChiTaRS3.1			BG009163	CYP19A1	chr15	51622577	+	CYP19A1	chr15	51615781	+
intron-intron	ENST00000368679	ENST00000557515		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000338631		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000357481		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000605057		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000457657		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000262710		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000397341		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000555053		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368679	ENST00000555352		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000557515		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000338631		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000357481		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000605057		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000457657		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000262710		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000397341		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000555053		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000368676	ENST00000555352		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000557515		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000338631		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000357481		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000605057		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000457657		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000262710		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000397341		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000555053		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000467145	ENST00000555352		ChiTaRS3.1			BI049573	ADAM12	chr10	127804180	+	ACIN1	chr14	23549585	+
intron-intron	ENST00000419617	ENST00000355630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000419617	ENST00000396617		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000419617	ENST00000402042		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000419617	ENST00000466278		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000419617	ENST00000407029		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000419617	ENST00000402630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000355630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000396617		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000402042		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000466278		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000407029		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000523601	ENST00000402630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000355630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000396617		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000402042		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000466278		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000407029		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000521768	ENST00000402630		ChiTaRS3.1			AW867773	STK3	chr8	99481091	+	MKL1	chr22	40830665	-
intron-intron	ENST00000366577	ENST00000396392		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000366577	ENST00000396396		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000366577	ENST00000604870		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000418145	ENST00000396392		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000418145	ENST00000396396		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000418145	ENST00000604870		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000535889	ENST00000396392		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000535889	ENST00000396396		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000535889	ENST00000604870		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000470570	ENST00000396392		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000470570	ENST00000396396		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000470570	ENST00000604870		ChiTaRS3.1			BG986763	MTR	chr1	236964888	-	PGM5	chr9	71047646	-
intron-intron	ENST00000327087	ENST00000327087		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000327087	ENST00000546188		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000327087	ENST00000356134		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000327087	ENST00000538154		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000546188	ENST00000327087		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000546188	ENST00000546188		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000546188	ENST00000356134		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000546188	ENST00000538154		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000356134	ENST00000327087		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000356134	ENST00000546188		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000356134	ENST00000356134		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000356134	ENST00000538154		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000538154	ENST00000327087		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000538154	ENST00000546188		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000538154	ENST00000356134		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-intron	ENST00000538154	ENST00000538154		ChiTaRS3.1			W28663	ANO2	chr12	5819678	+	ANO2	chr12	5819551	-
intron-3UTR	ENST00000505451	ENST00000366956		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-intron	ENST00000505451	ENST00000543945		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-intron	ENST00000505451	ENST00000491277		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-3UTR	ENST00000302874	ENST00000366956		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-intron	ENST00000302874	ENST00000543945		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-intron	ENST00000302874	ENST00000491277		ChiTaRS3.1			BQ380533	ZCCHC4	chr4	25331411	-	PTPN14	chr1	214524175	+
intron-intron	ENST00000340149	ENST00000393446		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000265437		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000393451		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000393449		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000323984		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000432298		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000422922		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000487459		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000393443		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000393447		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000393444		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000340149	ENST00000465133		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393446		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000265437		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393451		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393449		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000323984		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000432298		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000422922		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000487459		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393443		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393447		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000393444		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000361507	ENST00000465133		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393446		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000265437		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393451		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393449		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000323984		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000432298		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000422922		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000487459		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393443		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393447		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000393444		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
intron-intron	ENST00000526030	ENST00000465133		ChiTaRS3.1			BF883953	GAB2	chr11	77929688	-	ST7	chr7	116860485	+
3UTR-3UTR	ENST00000396613	ENST00000396613		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-intron	ENST00000396613	ENST00000377959		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000396613	ENST00000377960		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000396613	ENST00000474050		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
intron-3UTR	ENST00000377959	ENST00000396613		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
intron-intron	ENST00000377959	ENST00000377959		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
intron-3UTR	ENST00000377959	ENST00000377960		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
intron-3UTR	ENST00000377959	ENST00000474050		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000377960	ENST00000396613		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-intron	ENST00000377960	ENST00000377959		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000377960	ENST00000377960		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000377960	ENST00000474050		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000474050	ENST00000396613		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-intron	ENST00000474050	ENST00000377959		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000474050	ENST00000377960		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
3UTR-3UTR	ENST00000474050	ENST00000474050		ChiTaRS3.1			AI828773	GLIPR2	chr9	36163843	-	GLIPR2	chr9	36163794	+
intron-3UTR	ENST00000373795	ENST00000221561		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000373795	ENST00000327141		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-intron	ENST00000373795	ENST00000592330		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000373795	ENST00000586839		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000546138	ENST00000221561		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000546138	ENST00000327141		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-intron	ENST00000546138	ENST00000592330		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000546138	ENST00000586839		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000466448	ENST00000221561		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000466448	ENST00000327141		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-intron	ENST00000466448	ENST00000592330		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
intron-3UTR	ENST00000466448	ENST00000586839		ChiTaRS3.1			BF739153	SRSF4	chr1	29475338	+	AES	chr19	3053653	-
Frame-shit	ENST00000223061	ENST00000223061		ChiTaRS3.1			BI496353	PCOLCE	chr7	100205314	-	PCOLCE	chr7	100205561	+
5CDS-intron	ENST00000223061	ENST00000496269		ChiTaRS3.1			BI496353	PCOLCE	chr7	100205314	-	PCOLCE	chr7	100205561	+
intron-3CDS	ENST00000496269	ENST00000223061		ChiTaRS3.1			BI496353	PCOLCE	chr7	100205314	-	PCOLCE	chr7	100205561	+
intron-intron	ENST00000496269	ENST00000496269		ChiTaRS3.1			BI496353	PCOLCE	chr7	100205314	-	PCOLCE	chr7	100205561	+
intron-intron	ENST00000329697	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000329697	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000565322	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000565322	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000565232	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000565232	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000567001	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000567001	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000414188	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000414188	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000567288	ENST00000354593		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000567288	ENST00000336411		ChiTaRS3.1			CB162303	ACSM2B	chr16	20548553	+	CYP3A4	chr7	99359055	-
intron-intron	ENST00000367903	ENST00000375859		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000367903	ENST00000541629		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000367903	ENST00000469017		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000534288	ENST00000375859		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000534288	ENST00000541629		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000534288	ENST00000469017		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000313961	ENST00000375859		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000313961	ENST00000541629		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000313961	ENST00000469017		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000530507	ENST00000375859		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000530507	ENST00000541629		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000530507	ENST00000469017		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000527988	ENST00000375859		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000527988	ENST00000541629		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-intron	ENST00000527988	ENST00000469017		ChiTaRS3.1			CA440173	RGS5	chr1	163209027	+	SPIN1	chr9	91070131	-
intron-3CDS	ENST00000368445	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368445	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368445	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368445	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368445	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368445	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000368445	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368449	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000368449	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000448116	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000448116	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368450	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000368450	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000368453	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000368453	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000606391	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000606391	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000368445		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000368449		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000448116		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000368450		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000368453		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-3CDS	ENST00000490667	ENST00000606391		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000490667	ENST00000490667		ChiTaRS3.1			R19703	SHC1	chr1	154938694	+	SHC1	chr1	154938667	-
intron-intron	ENST00000523819	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-5UTR	ENST00000523819	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000518448	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000518448	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000536633	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000536633	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000546351	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000546351	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000318462	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000318462	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000276699	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000276699	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-intron	ENST00000522648	ENST00000523819		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000518448		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000536633		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000546351		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000318462		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000276699		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
5CDS-5UTR	ENST00000522648	ENST00000522648		ChiTaRS3.1			AF497803	FAM83A	chr8	124195571	+	FAM83A	chr8	124194921	+
intron-3UTR	ENST00000259199	ENST00000344063		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000431533		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000428193		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558815		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000259199	ENST00000560583		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000560055		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000559463		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558131		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000558752		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000259199	ENST00000458349		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000344063		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000431533		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000428193		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558815		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000416503	ENST00000560583		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000560055		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000559463		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558131		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000558752		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000416503	ENST00000458349		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000344063		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000431533		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000428193		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558815		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3UTR	ENST00000433343	ENST00000560583		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000560055		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000559463		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558131		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000558752		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-intron	ENST00000433343	ENST00000458349		ChiTaRS3.1			BQ649823	CBWD2	chr2	114223370	+	RPL28	chr19	55899743	-
intron-3CDS	ENST00000282470	ENST00000282470		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000282470	ENST00000418378		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000282470	ENST00000503414		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000418378	ENST00000282470		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000418378	ENST00000418378		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000418378	ENST00000503414		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000503414	ENST00000282470		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000503414	ENST00000418378		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
intron-3CDS	ENST00000503414	ENST00000503414		ChiTaRS3.1			BF222593	SPARCL1	chr4	88415479	+	SPARCL1	chr4	88414789	+
5CDS-3UTR	ENST00000371785	ENST00000371785		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
5CDS-3UTR	ENST00000371785	ENST00000241600		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
5CDS-intron	ENST00000371785	ENST00000488610		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
5CDS-3UTR	ENST00000241600	ENST00000371785		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
5CDS-3UTR	ENST00000241600	ENST00000241600		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
5CDS-intron	ENST00000241600	ENST00000488610		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
intron-3UTR	ENST00000488610	ENST00000371785		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
intron-3UTR	ENST00000488610	ENST00000241600		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
intron-intron	ENST00000488610	ENST00000488610		ChiTaRS3.1			BG469853	MRPS2	chr9	138395972	-	MRPS2	chr9	138396049	+
intron-intron	ENST00000242848	ENST00000515518		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000242848	ENST00000429839		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000242848	ENST00000455884		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000378921	ENST00000515518		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000378921	ENST00000429839		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000378921	ENST00000455884		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000282007	ENST00000515518		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000282007	ENST00000429839		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000282007	ENST00000455884		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000470308	ENST00000515518		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000470308	ENST00000429839		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000470308	ENST00000455884		ChiTaRS3.1			BF993233	ZC3H13	chr13	46530170	+	TMEM232	chr5	110036315	+
intron-intron	ENST00000552828	ENST00000552828		ChiTaRS3.1			BE715033	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000552828	ENST00000378026		ChiTaRS3.1			BE715033	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000378026	ENST00000552828		ChiTaRS3.1			BE715033	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000378026	ENST00000378026		ChiTaRS3.1			BE715033	CKAP4	chr12	106632864	+	CKAP4	chr12	106633542	-
intron-intron	ENST00000343846	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000366878	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000484758	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000494793	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000478605	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000454695	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000344029	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
intron-intron	ENST00000366877	ENST00000368790		ChiTaRS3.1			BE715813	SUSD4	chr1	223438078	-	CRCT1	chr1	152487519	+
Frame-shit	ENST00000254066	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000254066	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000254066	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
5CDS-5UTR	ENST00000254066	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000394089	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000394089	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000394089	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
5CDS-5UTR	ENST00000394089	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000425707	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000425707	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
Frame-shit	ENST00000425707	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
5CDS-5UTR	ENST00000425707	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394086	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394086	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394086	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-5UTR	ENST00000394086	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394081	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394081	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000394081	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-5UTR	ENST00000394081	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000420042	ENST00000263377		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000420042	ENST00000371835		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-3CDS	ENST00000420042	ENST00000360016		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
intron-5UTR	ENST00000420042	ENST00000602230		ChiTaRS3.1			BU154393	RARA	chr17	38487646	+	BRD4	chr19	15367035	-
5CDS-intron	ENST00000591462	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000591462	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000591462	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000591462	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000591462	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000252455	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000252455	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000252455	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000252455	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000252455	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000412601	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000412601	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000412601	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000412601	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000412601	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000592741	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000592741	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000592741	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000592741	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000592741	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000587327	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000587327	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000587327	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000587327	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000587327	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000589838	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000589838	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000589838	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000589838	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
5CDS-intron	ENST00000589838	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000591510	ENST00000346178		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000591510	ENST00000356638		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000591510	ENST00000534779		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000591510	ENST00000540933		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000591510	ENST00000534422		ChiTaRS3.1			BE773523	PRKCSH	chr19	11557160	+	GANAB	chr11	62407411	-
intron-intron	ENST00000256682	ENST00000381340		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000256682	ENST00000545902		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000256682	ENST00000242737		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000447318	ENST00000381340		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000447318	ENST00000545902		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000447318	ENST00000242737		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541959	ENST00000381340		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541959	ENST00000545902		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541959	ENST00000242737		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541967	ENST00000381340		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541967	ENST00000545902		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000541967	ENST00000242737		ChiTaRS3.1			BQ331543	ARF3	chr12	49334840	+	ITPR2	chr12	26959676	+
intron-intron	ENST00000540235	ENST00000372141		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000404547		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000372142		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000404576		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000556918		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000537893		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000540235	ENST00000545131		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000372141		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000404547		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000372142		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000404576		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000556918		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000537893		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393930	ENST00000545131		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000372141		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000404547		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000372142		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000404576		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000556918		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000537893		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000393931	ENST00000545131		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000372141		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000404547		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000372142		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000404576		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000556918		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000537893		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000310706	ENST00000545131		ChiTaRS3.1			BF826653	JUP	chr17	39847509	-	NRG3	chr10	83842520	+
intron-intron	ENST00000376621	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000376621	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000376621	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000376621	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383450	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383450	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383450	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000441604	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000441604	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000441604	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550904	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550904	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550904	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000428189	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000428189	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000428189	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551708	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551708	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551708	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000437917	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000437917	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000437917	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000548423	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000548423	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000548423	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000383596	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383596	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000383596	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000550942	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550942	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000550942	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000454829	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000454829	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000454829	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000552589	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000552589	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000552589	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000417834	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000417834	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000417834	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000376621		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000383450		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000441604		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000550904		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000428189		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000551708		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000437917		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000548423		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000383596		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000550942		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000454829		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-intron	ENST00000551903	ENST00000552589		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551903	ENST00000417834		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000551903	ENST00000551903		ChiTaRS3.1			AW972353	GNL1	chr6	1846829	-	GNL1	chr6	1846018	+
intron-3UTR	ENST00000302584	ENST00000366610		ChiTaRS3.1			T07193	NEUROD2	chr17	37760036	-	IRF2BP2	chr1	234740323	+
intron-3UTR	ENST00000302584	ENST00000366609		ChiTaRS3.1			T07193	NEUROD2	chr17	37760036	-	IRF2BP2	chr1	234740323	+
intron-intron	ENST00000302584	ENST00000491430		ChiTaRS3.1			T07193	NEUROD2	chr17	37760036	-	IRF2BP2	chr1	234740323	+
intron-intron	ENST00000384756	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384756	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384756	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384756	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000364799	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000364799	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000364799	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000364799	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384693	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384693	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384693	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384693	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
5CDS-intron	ENST00000383926	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
5CDS-intron	ENST00000383926	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
5CDS-5UTR	ENST00000383926	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
5CDS-5UTR	ENST00000383926	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000516331	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000516331	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000516331	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000516331	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384706	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384706	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384706	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384706	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000363981	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000363981	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000363981	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000363981	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384147	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000384147	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384147	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000384147	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000365607	ENST00000594786		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000365607	ENST00000599700		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000365607	ENST00000263093		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-5UTR	ENST00000365607	ENST00000601355		ChiTaRS3.1			DA285853	SNHG1	chr11	62621379	-	SLC27A5	chr19	59023364	-
intron-intron	ENST00000335255	ENST00000335255		ChiTaRS3.1			BE073843	FOXK2	chr17	80483602	+	FOXK2	chr17	80483560	-
intron-intron	ENST00000335255	ENST00000529652		ChiTaRS3.1			BE073843	FOXK2	chr17	80483602	+	FOXK2	chr17	80483560	-
intron-intron	ENST00000529652	ENST00000335255		ChiTaRS3.1			BE073843	FOXK2	chr17	80483602	+	FOXK2	chr17	80483560	-
intron-intron	ENST00000529652	ENST00000529652		ChiTaRS3.1			BE073843	FOXK2	chr17	80483602	+	FOXK2	chr17	80483560	-
intron-intron	ENST00000604938	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000401010	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000339388	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000369323	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000605317	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000479926	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000604894	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000401009	ENST00000369219		ChiTaRS3.1			BP229923	NBPF11	chr1	147931724	-	NBPF14	chr1	145042446	+
intron-intron	ENST00000267085	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000267085	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379843	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000379846	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000444623	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000453446	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000542115	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000267085		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000379843		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000379846		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000444623		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000453446		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000542115		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
intron-intron	ENST00000491654	ENST00000491654		ChiTaRS3.1			AA805343	CSAD	chr12	53573639	+	CSAD	chr12	53569389	+
3UTR-intron	ENST00000262493	ENST00000288228		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
3UTR-intron	ENST00000262493	ENST00000557895		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
intron-intron	ENST00000262494	ENST00000288228		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
intron-intron	ENST00000262494	ENST00000557895		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
intron-intron	ENST00000569295	ENST00000288228		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
intron-intron	ENST00000569295	ENST00000557895		ChiTaRS3.1			M78823	GNAO1	chr16	56390777	-	FAM81A	chr15	59732524	+
intron-3UTR	ENST00000260630	ENST00000260630		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000260630	ENST00000494864		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000260630	ENST00000407341		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-3UTR	ENST00000494864	ENST00000260630		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000494864	ENST00000494864		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000494864	ENST00000407341		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-3UTR	ENST00000407341	ENST00000260630		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000407341	ENST00000494864		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
intron-intron	ENST00000407341	ENST00000407341		ChiTaRS3.1			AW958883	CYP1B1	chr2	38295189	-	CYP1B1	chr2	38295677	-
5CDS-intron	ENST00000510325	ENST00000427662		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000510325	ENST00000369774		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000510325	ENST00000355946		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000510325	ENST00000315994		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000510325	ENST00000540321		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000510325	ENST00000538130		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000359359	ENST00000427662		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000359359	ENST00000369774		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000359359	ENST00000355946		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000359359	ENST00000315994		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000359359	ENST00000540321		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000359359	ENST00000538130		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000480824	ENST00000427662		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000480824	ENST00000369774		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000480824	ENST00000355946		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000480824	ENST00000315994		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000480824	ENST00000540321		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000480824	ENST00000538130		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000355190	ENST00000427662		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000355190	ENST00000369774		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000355190	ENST00000355946		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000355190	ENST00000315994		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000355190	ENST00000540321		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000355190	ENST00000538130		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000373685	ENST00000427662		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000373685	ENST00000369774		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-3UTR	ENST00000373685	ENST00000355946		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000373685	ENST00000315994		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000373685	ENST00000540321		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
5CDS-intron	ENST00000373685	ENST00000538130		ChiTaRS3.1			AI962613	C6orf89	chr6	36891162	-	SH3PXD2A	chr10	105356873	+
intron-intron	ENST00000267485	ENST00000267485		ChiTaRS3.1			BF083753	C14orf37	chr14	58737614	-	C14orf37	chr14	58738633	+
intron-intron	ENST00000267485	ENST00000334342		ChiTaRS3.1			BF083753	C14orf37	chr14	58737614	-	C14orf37	chr14	58738633	+
intron-intron	ENST00000334342	ENST00000267485		ChiTaRS3.1			BF083753	C14orf37	chr14	58737614	-	C14orf37	chr14	58738633	+
intron-intron	ENST00000334342	ENST00000334342		ChiTaRS3.1			BF083753	C14orf37	chr14	58737614	-	C14orf37	chr14	58738633	+
intron-3CDS	ENST00000596148	ENST00000596148		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000596148	ENST00000317378		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000596148	ENST00000426877		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-intron	ENST00000596148	ENST00000595985		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000317378	ENST00000596148		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000317378	ENST00000317378		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000317378	ENST00000426877		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-intron	ENST00000317378	ENST00000595985		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000426877	ENST00000596148		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000426877	ENST00000317378		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000426877	ENST00000426877		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-intron	ENST00000426877	ENST00000595985		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000595985	ENST00000596148		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000595985	ENST00000317378		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-3CDS	ENST00000595985	ENST00000426877		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-intron	ENST00000595985	ENST00000595985		ChiTaRS3.1			AI702783	TRAPPC5	chr19	7747130	-	TRAPPC5	chr19	7747312	+
intron-intron	ENST00000429344	ENST00000429344		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000429344	ENST00000248420		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000429344	ENST00000221899		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000248420	ENST00000429344		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000248420	ENST00000248420		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000248420	ENST00000221899		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000221899	ENST00000429344		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000221899	ENST00000248420		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
intron-intron	ENST00000221899	ENST00000221899		ChiTaRS3.1			BI000523	CACTIN	chr19	3622171	+	CACTIN	chr19	3622883	-
5CDS-3UTR	ENST00000368694	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368694	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368694	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-3UTR	ENST00000495554	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
3UTR-intron	ENST00000495554	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000403433	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000403433	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368690	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368690	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368687	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368687	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368694		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000495554		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000403433		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368690		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-3UTR	ENST00000368686	ENST00000368687		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
5CDS-intron	ENST00000368686	ENST00000368686		ChiTaRS3.1			BU618453	CHTOP	chr1	153610836	-	CHTOP	chr1	153617775	+
intron-5UTR	ENST00000342669	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000342669	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000342669	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000342669	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000342669	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000342669	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000342669	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000342669	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000585392	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000585392	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000585392	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000585392	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000585392	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000585392	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000585392	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000585392	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587367	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587367	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587367	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587367	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587367	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587367	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587367	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587367	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588599	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588599	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588599	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588599	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588599	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588599	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588599	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588599	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000391932	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000391932	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000391932	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000391932	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000391932	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000391932	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000391932	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000391932	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588301	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588301	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588301	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588301	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588301	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588301	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000588301	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000588301	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000590212	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000590212	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000590212	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000590212	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000590212	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000590212	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000590212	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000590212	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587579	ENST00000342669		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587579	ENST00000585392		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587579	ENST00000587367		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587579	ENST00000588599		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587579	ENST00000391932		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587579	ENST00000588301		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-5UTR	ENST00000587579	ENST00000590212		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000587579	ENST00000587579		ChiTaRS3.1			BF885323	SNRPD2	chr19	46190786	+	SNRPD2	chr19	46195174	-
intron-intron	ENST00000375331	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375331	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000375333	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000463823	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000551718	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000425138	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000433397	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000490195	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549310	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000426802	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000452688	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000460232	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000549916	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000444147	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000431383	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000465050	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000547578	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383328	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000383327	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000469629	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000550656	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000424104	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000438256	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000375331		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000375333		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000463823		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000551718		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000425138		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000433397		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000490195		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000549310		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000426802		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000452688		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000460232		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000549916		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000444147		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000431383		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000465050		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000547578		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000383328		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000383327		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000469629		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000550656		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000424104		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000438256		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000493840	ENST00000493840		ChiTaRS3.1			K02403	STK19	chr6	3282544	-	STK19	chr6	3362502	+
intron-intron	ENST00000396081	ENST00000262940		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000396081	ENST00000461209		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000396081	ENST00000449970		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000396081	ENST00000462172		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000396081	ENST00000521822		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000311350	ENST00000262940		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000311350	ENST00000461209		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000311350	ENST00000449970		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000311350	ENST00000462172		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000311350	ENST00000521822		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000426180	ENST00000262940		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000426180	ENST00000461209		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000426180	ENST00000449970		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000426180	ENST00000462172		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-intron	ENST00000426180	ENST00000521822		ChiTaRS3.1			BG149613	HERPUD2	chr7	35672946	-	RASA4	chr7	102331484	+
intron-3UTR	ENST00000244230	ENST00000221561		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000327141		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000592330		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000244230	ENST00000586839		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000498451	ENST00000221561		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000327141		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000592330		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000498451	ENST00000586839		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000468427	ENST00000221561		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000327141		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000592330		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-intron	ENST00000468427	ENST00000586839		ChiTaRS3.1			BE835143	MPHOSPH10	chr2	71362676	-	AES	chr19	3053161	+
intron-3UTR	ENST00000261497	ENST00000261497		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000261497	ENST00000537526		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-intron	ENST00000261497	ENST00000455117		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000537526	ENST00000261497		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000537526	ENST00000537526		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-intron	ENST00000537526	ENST00000455117		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000455117	ENST00000261497		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000455117	ENST00000537526		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-intron	ENST00000455117	ENST00000455117		ChiTaRS3.1			AW504683	USP22	chr17	20905720	+	USP22	chr17	20905646	-
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			W00663	IGFBP5	chr2	217538823	-	IGFBP5	chr2	217540032	-
intron-5UTR	ENST00000394609	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000405240	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000357376	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000317610	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000357732	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000337526	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000394611	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000404909	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000486085	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000354474	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-5UTR	ENST00000402434	ENST00000394609		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			W27023	RTN4	chr2	55237438	+	RTN4	chr2	55237361	-
5UTR-5UTR	ENST00000311485	ENST00000257749		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000311485	ENST00000537989		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000311485	ENST00000343122		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000311485	ENST00000470301		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000528428	ENST00000257749		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000528428	ENST00000537989		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000528428	ENST00000343122		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
5UTR-5UTR	ENST00000528428	ENST00000470301		ChiTaRS3.1			BM152333	RAG2	chr11	36619650	-	BACH2	chr6	90798830	-
Frame-shit	ENST00000356554	ENST00000356554		ChiTaRS3.1			DW434893	MAN1A2	chr1	117957454	+	MAN1A2	chr1	117944807	+
5CDS-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			DW434893	MAN1A2	chr1	117957454	+	MAN1A2	chr1	117944807	+
3UTR-3CDS	ENST00000482811	ENST00000356554		ChiTaRS3.1			DW434893	MAN1A2	chr1	117957454	+	MAN1A2	chr1	117944807	+
3UTR-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			DW434893	MAN1A2	chr1	117957454	+	MAN1A2	chr1	117944807	+
5CDS-intron	ENST00000519948	ENST00000495075		ChiTaRS3.1			DR980083	ATXN7L3B	chr12	74935217	+	MRPS22	chr3	139075989	-
5CDS-intron	ENST00000519948	ENST00000310776		ChiTaRS3.1			DR980083	ATXN7L3B	chr12	74935217	+	MRPS22	chr3	139075989	-
5CDS-intron	ENST00000519948	ENST00000465056		ChiTaRS3.1			DR980083	ATXN7L3B	chr12	74935217	+	MRPS22	chr3	139075989	-
5CDS-intron	ENST00000519948	ENST00000478464		ChiTaRS3.1			DR980083	ATXN7L3B	chr12	74935217	+	MRPS22	chr3	139075989	-
5CDS-intron	ENST00000519948	ENST00000489521		ChiTaRS3.1			DR980083	ATXN7L3B	chr12	74935217	+	MRPS22	chr3	139075989	-
intron-intron	ENST00000380121	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000380121	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000504114	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000504114	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000357505	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000357505	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000399396	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000399396	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-intron	ENST00000446957	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
5CDS-5UTR	ENST00000446957	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-intron	ENST00000267068	ENST00000380121		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000504114		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000357505		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000399396		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000446957		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-5UTR	ENST00000267068	ENST00000267068		ChiTaRS3.1			BI015483	N4BP2L2	chr13	33091994	-	N4BP2L2	chr13	33101671	-
intron-intron	ENST00000329516	ENST00000359236		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
intron-intron	ENST00000329516	ENST00000536905		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
intron-intron	ENST00000330331	ENST00000359236		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
intron-intron	ENST00000330331	ENST00000536905		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
intron-intron	ENST00000490990	ENST00000359236		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
intron-intron	ENST00000490990	ENST00000536905		ChiTaRS3.1			BQ303873	RGPD6	chr2	110609992	+	VSIG10	chr12	118511918	-
In-frame	ENST00000536468	ENST00000381480		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
In-frame	ENST00000536468	ENST00000543576		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
5CDS-intron	ENST00000536468	ENST00000591030		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
In-frame	ENST00000247668	ENST00000381480		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
In-frame	ENST00000247668	ENST00000543576		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
5CDS-intron	ENST00000247668	ENST00000591030		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
In-frame	ENST00000359662	ENST00000381480		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
In-frame	ENST00000359662	ENST00000543576		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
5CDS-intron	ENST00000359662	ENST00000591030		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
intron-3CDS	ENST00000482854	ENST00000381480		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
intron-3CDS	ENST00000482854	ENST00000543576		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
intron-intron	ENST00000482854	ENST00000591030		ChiTaRS3.1			BI031313	TRAF2	chr9	139818424	-	DENND1C	chr19	6475907	+
intron-intron	ENST00000389467	ENST00000472729		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000389467	ENST00000311832		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000389467	ENST00000538736		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000446231	ENST00000472729		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000446231	ENST00000311832		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000446231	ENST00000538736		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000565224	ENST00000472729		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000565224	ENST00000311832		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000565224	ENST00000538736		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000567737	ENST00000472729		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000567737	ENST00000311832		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000567737	ENST00000538736		ChiTaRS3.1			BG769973	SMG1	chr16	18819376	-	COMMD1	chr2	62357063	-
intron-intron	ENST00000324871	ENST00000393359		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-intron	ENST00000324871	ENST00000258449		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-intron	ENST00000257848	ENST00000393359		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-intron	ENST00000257848	ENST00000258449		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-intron	ENST00000548681	ENST00000393359		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-intron	ENST00000548681	ENST00000258449		ChiTaRS3.1			N29143	METTL1	chr12	58164458	-	TGFBRAP1	chr2	105894262	-
intron-3UTR	ENST00000417225	ENST00000394609		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000405240		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000357376		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000317610		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000357732		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000337526		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000394611		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000404909		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-5UTR	ENST00000417225	ENST00000486085		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000354474		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000417225	ENST00000402434		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000394609		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000405240		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000357376		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000317610		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000357732		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000337526		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000394611		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000404909		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-5UTR	ENST00000443527	ENST00000486085		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000354474		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
3UTR-3UTR	ENST00000443527	ENST00000402434		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000394609		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000405240		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000357376		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000317610		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000357732		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000337526		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000394611		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000404909		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-5UTR	ENST00000473199	ENST00000486085		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000354474		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000473199	ENST00000402434		ChiTaRS3.1			BE835303	CRY2	chr11	45904225	-	RTN4	chr2	55200228	-
intron-3UTR	ENST00000361189	ENST00000361189		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-3UTR	ENST00000361189	ENST00000361557		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-intron	ENST00000361189	ENST00000511624		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-3UTR	ENST00000361557	ENST00000361189		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-3UTR	ENST00000361557	ENST00000361557		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-intron	ENST00000361557	ENST00000511624		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-3UTR	ENST00000511624	ENST00000361189		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-3UTR	ENST00000511624	ENST00000361557		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-intron	ENST00000511624	ENST00000511624		ChiTaRS3.1			CN307923	PJA2	chr5	108672746	+	PJA2	chr5	108672585	-
intron-intron	ENST00000272238	ENST00000272238		ChiTaRS3.1			BE840913	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
intron-3UTR	ENST00000272238	ENST00000381661		ChiTaRS3.1			BE840913	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
3UTR-intron	ENST00000381661	ENST00000272238		ChiTaRS3.1			BE840913	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
3UTR-3UTR	ENST00000381661	ENST00000381661		ChiTaRS3.1			BE840913	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
5UTR-5UTR	ENST00000397933	ENST00000397933		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5UTR-5UTR	ENST00000397933	ENST00000473835		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5UTR-5UTR	ENST00000397933	ENST00000493598		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000473835	ENST00000397933		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000473835	ENST00000473835		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000473835	ENST00000493598		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000493598	ENST00000397933		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000493598	ENST00000473835		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
5CDS-5UTR	ENST00000493598	ENST00000493598		ChiTaRS3.1			BE080133	U2SURP	chr3	142741476	+	U2SURP	chr3	142731169	+
3UTR-5UTR	ENST00000309042	ENST00000228284		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
3UTR-intron	ENST00000309042	ENST00000431469		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
3UTR-intron	ENST00000309042	ENST00000552221		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
3UTR-5UTR	ENST00000309042	ENST00000546611		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
intron-5UTR	ENST00000514063	ENST00000228284		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
intron-intron	ENST00000514063	ENST00000431469		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
intron-intron	ENST00000514063	ENST00000552221		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
intron-5UTR	ENST00000514063	ENST00000546611		ChiTaRS3.1			DB293893	REST	chr4	57800138	+	SART3	chr12	108954951	-
intron-intron	ENST00000392870	ENST00000254667		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000392870	ENST00000419012		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000392870	ENST00000430713		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000392870	ENST00000471218		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000392870	ENST00000306042		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000369108	ENST00000254667		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000369108	ENST00000419012		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000369108	ENST00000430713		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000369108	ENST00000471218		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000369108	ENST00000306042		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000473264	ENST00000254667		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000473264	ENST00000419012		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000473264	ENST00000430713		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000473264	ENST00000471218		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000473264	ENST00000306042		ChiTaRS3.1			BF846763	GRK5	chr10	120998321	-	PTPRE	chr10	129825728	+
intron-intron	ENST00000359801	ENST00000375651		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000458062		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000608703		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000430065		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000422919		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000441618		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000449876		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000433487		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000452298		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000400040		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000359801	ENST00000383389		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000375651		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000458062		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000608703		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000430065		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000422919		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000441618		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000449876		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000433487		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000452298		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000400040		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000444444	ENST00000383389		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000375651		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000458062		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000608703		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000430065		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000422919		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000441618		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000449876		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000433487		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000452298		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000400040		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000537284	ENST00000383389		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000375651		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000458062		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000608703		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000430065		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000422919		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000441618		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000449876		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000433487		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000452298		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000400040		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
intron-intron	ENST00000608747	ENST00000383389		ChiTaRS3.1			AK097113	SIRPB2	chr20	1470878	-	HSPA1A	chr6	3078464	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BG961413	MALAT1	chr11	65266969	-	MALAT1	chr11	65267547	-
intron-intron	ENST00000379251	ENST00000379251		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379251	ENST00000379253		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379251	ENST00000379254		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379251	ENST00000379270		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-3UTR	ENST00000379251	ENST00000489394		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379253	ENST00000379251		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379253	ENST00000379253		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379253	ENST00000379254		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-intron	ENST00000379253	ENST00000379270		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-3UTR	ENST00000379253	ENST00000489394		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379254	ENST00000379251		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379254	ENST00000379253		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379254	ENST00000379254		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379254	ENST00000379270		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-3UTR	ENST00000379254	ENST00000489394		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379270	ENST00000379251		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379270	ENST00000379253		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379270	ENST00000379254		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000379270	ENST00000379270		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-3UTR	ENST00000379270	ENST00000489394		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000489394	ENST00000379251		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000489394	ENST00000379253		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000489394	ENST00000379254		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-intron	ENST00000489394	ENST00000379270		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
3UTR-3UTR	ENST00000489394	ENST00000489394		ChiTaRS3.1			W31613	SAT1	chrX	23804095	-	SAT1	chrX	23803945	+
intron-3CDS	ENST00000429709	ENST00000285021		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000429709	ENST00000449060		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000450518	ENST00000285021		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000450518	ENST00000449060		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000392662	ENST00000285021		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000392662	ENST00000449060		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000467615	ENST00000285021		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-3CDS	ENST00000467615	ENST00000449060		ChiTaRS3.1			BE147953	ACTL6A	chr3	179289150	+	XPC	chr3	14187635	-
intron-5UTR	ENST00000370661	ENST00000370661		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000370661	ENST00000316077		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000370661	ENST00000370663		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000370661	ENST00000495432		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000316077	ENST00000370661		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000316077	ENST00000316077		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000316077	ENST00000370663		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000316077	ENST00000495432		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000370663	ENST00000370661		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000370663	ENST00000316077		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000370663	ENST00000370663		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000370663	ENST00000495432		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000495432	ENST00000370661		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-5UTR	ENST00000495432	ENST00000316077		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000495432	ENST00000370663		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
intron-intron	ENST00000495432	ENST00000495432		ChiTaRS3.1			AK022463	MAP7D3	chrX	135310838	-	MAP7D3	chrX	135333518	-
Frame-shit	ENST00000300030	ENST00000321728		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
Frame-shit	ENST00000300030	ENST00000303531		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000300030	ENST00000482000		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000300030	ENST00000498058		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000558779	ENST00000321728		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
intron-3CDS	ENST00000558779	ENST00000303531		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000558779	ENST00000482000		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000558779	ENST00000498058		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
In-frame	ENST00000380290	ENST00000321728		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
In-frame	ENST00000380290	ENST00000303531		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000380290	ENST00000482000		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000380290	ENST00000498058		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
Frame-shit	ENST00000557835	ENST00000321728		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
Frame-shit	ENST00000557835	ENST00000303531		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000557835	ENST00000482000		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000557835	ENST00000498058		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
Frame-shit	ENST00000559950	ENST00000321728		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
Frame-shit	ENST00000559950	ENST00000303531		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000559950	ENST00000482000		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
5CDS-intron	ENST00000559950	ENST00000498058		ChiTaRS3.1			DB116073	FAM96A	chr15	64380884	-	PRKCB	chr16	24166004	+
intron-intron	ENST00000589977	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000589977	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000591571	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586738	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588783	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586752	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588302	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000590964	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000341249	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000588822	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000589977		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000591571		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000586738		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000588783		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000586752		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000588302		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000590964		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000341249		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000588822		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-intron	ENST00000586200	ENST00000586200		ChiTaRS3.1			BF825543	METTL23	chr17	74727819	-	METTL23	chr17	74727971	+
intron-3UTR	ENST00000264122	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000264122	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000264122	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000264122	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000264122	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000264122	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000407712	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000407712	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000407712	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000407712	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000407712	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000407712	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000394027	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000394027	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000394027	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000394027	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000394027	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000394027	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000403724	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000403724	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000403724	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000403724	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000403724	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000403724	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000405772	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000405772	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000405772	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000405772	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000405772	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000405772	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000545639	ENST00000264122		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000545639	ENST00000407712		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-3UTR	ENST00000545639	ENST00000394027		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000545639	ENST00000403724		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000545639	ENST00000405772		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000545639	ENST00000545639		ChiTaRS3.1			BF840733	CBLB	chr3	105377486	+	CBLB	chr3	105377584	-
intron-intron	ENST00000359979	ENST00000359979		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
intron-intron	ENST00000359979	ENST00000372088		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
intron-intron	ENST00000359979	ENST00000224756		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
intron-intron	ENST00000359979	ENST00000494144		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
intron-intron	ENST00000359979	ENST00000543283		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000372088	ENST00000359979		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000372088	ENST00000372088		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000372088	ENST00000224756		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000372088	ENST00000494144		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000372088	ENST00000543283		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000224756	ENST00000359979		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000224756	ENST00000372088		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000224756	ENST00000224756		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000224756	ENST00000494144		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000224756	ENST00000543283		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
3UTR-intron	ENST00000494144	ENST00000359979		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
3UTR-intron	ENST00000494144	ENST00000372088		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
3UTR-intron	ENST00000494144	ENST00000224756		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
3UTR-intron	ENST00000494144	ENST00000494144		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
3UTR-intron	ENST00000494144	ENST00000543283		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000543283	ENST00000359979		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000543283	ENST00000372088		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000543283	ENST00000224756		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000543283	ENST00000494144		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
5CDS-intron	ENST00000543283	ENST00000543283		ChiTaRS3.1			DN915413	CCSER2	chr10	86237420	+	CCSER2	chr10	86198268	+
intron-5UTR	ENST00000466152	ENST00000466152		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000466152	ENST00000371588		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000466152	ENST00000371582		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-intron	ENST00000466152	ENST00000371583		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371588	ENST00000466152		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371588	ENST00000371588		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371588	ENST00000371582		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-intron	ENST00000371588	ENST00000371583		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371582	ENST00000466152		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371582	ENST00000371588		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371582	ENST00000371582		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-intron	ENST00000371582	ENST00000371583		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371583	ENST00000466152		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371583	ENST00000371588		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-5UTR	ENST00000371583	ENST00000371582		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-intron	ENST00000371583	ENST00000371583		ChiTaRS3.1			CB241933	DPM1	chr20	49551749	+	DPM1	chr20	49558627	-
intron-3CDS	ENST00000496484	ENST00000262544		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000336714		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377475		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377465		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000496484	ENST00000494645		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000262544		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000336714		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377475		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377465		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000253686	ENST00000494645		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000262544		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000336714		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377475		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377465		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000449354	ENST00000494645		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000262544		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000336714		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377475		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377465		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000444840	ENST00000494645		ChiTaRS3.1			N22743	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000331738	ENST00000331738		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-3CDS	ENST00000331738	ENST00000354654		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-5UTR	ENST00000331738	ENST00000392442		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-3CDS	ENST00000354654	ENST00000331738		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-3CDS	ENST00000354654	ENST00000354654		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-5UTR	ENST00000354654	ENST00000392442		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-3CDS	ENST00000392442	ENST00000331738		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-3CDS	ENST00000392442	ENST00000354654		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-5UTR	ENST00000392442	ENST00000392442		ChiTaRS3.1			CB157763	RSRC2	chr12	122992863	+	RSRC2	chr12	122995712	-
intron-intron	ENST00000303538	ENST00000303538		ChiTaRS3.1			CK822313	PDS5A	chr4	39867233	+	PDS5A	chr4	39865708	+
intron-intron	ENST00000303538	ENST00000503396		ChiTaRS3.1			CK822313	PDS5A	chr4	39867233	+	PDS5A	chr4	39865708	+
intron-intron	ENST00000503396	ENST00000303538		ChiTaRS3.1			CK822313	PDS5A	chr4	39867233	+	PDS5A	chr4	39865708	+
intron-intron	ENST00000503396	ENST00000503396		ChiTaRS3.1			CK822313	PDS5A	chr4	39867233	+	PDS5A	chr4	39865708	+
intron-intron	ENST00000382668	ENST00000353170		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382668	ENST00000347925		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382668	ENST00000566349		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382668	ENST00000270583		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382666	ENST00000353170		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382666	ENST00000347925		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382666	ENST00000566349		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000382666	ENST00000270583		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000427358	ENST00000353170		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000427358	ENST00000347925		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000427358	ENST00000566349		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-intron	ENST00000427358	ENST00000270583		ChiTaRS3.1			BE061963	FAHD1	chr16	1878972	-	KLHDC4	chr16	87767030	-
intron-3CDS	ENST00000439730	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000439730	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000439730	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000439730	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000439730	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000439730	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000576910	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000576910	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000576910	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000576910	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000576910	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000576910	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000393456	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000393456	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-3CDS	ENST00000393456	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000393456	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000393456	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
3UTR-intron	ENST00000393456	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000415811	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000415811	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000415811	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000415811	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000415811	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000415811	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000575949	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000575949	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000575949	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000575949	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000575949	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000575949	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000225567	ENST00000439730		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000225567	ENST00000576910		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-3CDS	ENST00000225567	ENST00000393456		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000225567	ENST00000415811		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000225567	ENST00000575949		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
intron-intron	ENST00000225567	ENST00000225567		ChiTaRS3.1			AI400943	GOSR2	chr17	45016130	-	GOSR2	chr17	45016038	+
5CDS-3UTR	ENST00000381916	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000381916	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000333602	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000333602	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000428187	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000428187	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000392400	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000392400	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000316664	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
5CDS-3UTR	ENST00000316664	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
intron-3UTR	ENST00000468819	ENST00000305943		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
intron-3UTR	ENST00000468819	ENST00000482739		ChiTaRS3.1			AJ713023	TNK2	chr3	195599151	-	RNF187	chr1	228682475	+
intron-3UTR	ENST00000406775	ENST00000328965		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000406775	ENST00000531220		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000406775	ENST00000534735		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-3UTR	ENST00000342771	ENST00000328965		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000342771	ENST00000531220		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000342771	ENST00000534735		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-3UTR	ENST00000403018	ENST00000328965		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000403018	ENST00000531220		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000403018	ENST00000534735		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-3UTR	ENST00000489774	ENST00000328965		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000489774	ENST00000531220		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-intron	ENST00000489774	ENST00000534735		ChiTaRS3.1			R99623	AUTS2	chr7	70002755	+	OAF	chr11	120100537	+
intron-3UTR	ENST00000520753	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520753	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520753	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520753	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520753	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000521613	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000521613	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000521613	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000521613	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000521613	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519940	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519940	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519940	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519940	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519940	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519332	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519332	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519332	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000519332	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000519332	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520007	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520007	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520007	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520007	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520007	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000600800	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000600800	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000600800	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000600800	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000600800	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000357778	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000357778	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000357778	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000357778	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000357778	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000391898	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000391898	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000391898	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000391898	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000391898	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000359009	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000359009	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000359009	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000359009	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000359009	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000447740	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000447740	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000447740	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000447740	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000447740	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520153	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520153	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520153	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520153	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520153	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520015	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520015	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520015	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000520015	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000520015	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000522431	ENST00000520753		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000522431	ENST00000521613		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000522431	ENST00000519940		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000519332		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000520007		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000600800		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000357778		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000391898		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000359009		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000447740		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000520153		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000522431	ENST00000520015		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-intron	ENST00000522431	ENST00000522431		ChiTaRS3.1			BE086543	CARD8	chr19	48714956	-	CARD8	chr19	48715133	+
intron-3UTR	ENST00000251081	ENST00000251081		ChiTaRS3.1			AA805783	DSC2	chr18	28646302	-	DSC2	chr18	28646229	+
intron-3UTR	ENST00000251081	ENST00000280904		ChiTaRS3.1			AA805783	DSC2	chr18	28646302	-	DSC2	chr18	28646229	+
intron-3UTR	ENST00000280904	ENST00000251081		ChiTaRS3.1			AA805783	DSC2	chr18	28646302	-	DSC2	chr18	28646229	+
intron-3UTR	ENST00000280904	ENST00000280904		ChiTaRS3.1			AA805783	DSC2	chr18	28646302	-	DSC2	chr18	28646229	+
5CDS-intron	ENST00000335762	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000335762	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399655	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000480911	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399644	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000344100	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399638	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399629	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399597	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000327702	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399621	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399649	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399637	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000402845	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399591	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399641	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000347598	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399606	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399595	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399601	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399603	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399634	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000399617	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
5CDS-intron	ENST00000406454	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000335762		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399655		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000480911		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399644		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000344100		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399638		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399629		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399597		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000327702		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399621		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399649		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399637		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000402845		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399591		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399641		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000347598		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399606		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399595		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399601		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399603		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399634		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000399617		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000406454		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000491104	ENST00000491104		ChiTaRS3.1			BG950463	CACNA1C	chr12	2764381	-	CACNA1C	chr12	2764464	+
intron-intron	ENST00000354329	ENST00000295897		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000415165		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000503124		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000509063		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000401494		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000354329	ENST00000505649		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000295897		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000415165		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000503124		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000509063		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000401494		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000529578	ENST00000505649		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000295897		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000415165		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000503124		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000509063		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000401494		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000533112	ENST00000505649		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000295897		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000415165		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000503124		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000509063		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000401494		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000531253	ENST00000505649		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000295897		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000415165		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000503124		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000509063		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000401494		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-intron	ENST00000527372	ENST00000505649		ChiTaRS3.1			BG564023	MYO18A	chr17	27405532	-	ALB	chr4	74280437	+
intron-3CDS	ENST00000316752	ENST00000356763		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-intron	ENST00000316752	ENST00000512677		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-3CDS	ENST00000407787	ENST00000356763		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-intron	ENST00000407787	ENST00000512677		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-3CDS	ENST00000398658	ENST00000356763		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-intron	ENST00000398658	ENST00000512677		ChiTaRS3.1			BM987763	PUS10	chr2	61167643	+	PIK3R4	chr3	130452782	+
intron-3UTR	ENST00000372189	ENST00000534336		ChiTaRS3.1			BF935963	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000372195	ENST00000534336		ChiTaRS3.1			BF935963	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000372190	ENST00000534336		ChiTaRS3.1			BF935963	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
intron-3UTR	ENST00000481260	ENST00000534336		ChiTaRS3.1			BF935963	RAPGEF1	chr9	134573581	+	MALAT1	chr11	65270084	-
5CDS-intron	ENST00000361417	ENST00000361417		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000356063		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000534672		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000527898		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000361417	ENST00000524713		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000361417		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000356063		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000534672		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000527898		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000356063	ENST00000524713		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000361417		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000356063		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000534672		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000527898		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
3UTR-intron	ENST00000534672	ENST00000524713		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000361417		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000356063		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000534672		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000527898		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000527898	ENST00000524713		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000361417		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000356063		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000534672		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000527898		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
5CDS-intron	ENST00000524713	ENST00000524713		ChiTaRS3.1			AW962513	PHLDB1	chr11	118516345	+	PHLDB1	chr11	118508359	+
intron-intron	ENST00000358691	ENST00000358691		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000358691	ENST00000580168		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000358691	ENST00000580662		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580168	ENST00000358691		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580168	ENST00000580168		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580168	ENST00000580662		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580662	ENST00000358691		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580662	ENST00000580168		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000580662	ENST00000580662		ChiTaRS3.1			BF351053	HELZ	chr17	65190658	-	HELZ	chr17	65190269	+
intron-intron	ENST00000395074	ENST00000577031		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000318059		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000573553		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000575848		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000571941		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000576217		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000395074	ENST00000575942		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000577031		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000318059		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000573553		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000575848		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000571941		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000576217		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528954	ENST00000575942		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000577031		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000318059		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000573553		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000575848		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000571941		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000576217		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000528489	ENST00000575942		ChiTaRS3.1			AA829953	LPXN	chr11	58294572	+	PAM16	chr16	4394810	+
intron-intron	ENST00000384838	ENST00000384838		ChiTaRS3.1			AI633853	LINC00461	chr5	87962559	+	LINC00461	chr5	87960399	+
intron-intron	ENST00000337907	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000337907	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000337907	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000337907	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000337907	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000337907	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000377464	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400907	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000400908	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000476556	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000337907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000377464		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000400907		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000400908		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000476556		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000460659	ENST00000460659		ChiTaRS3.1			AA878413	RERE	chr1	8661951	-	RERE	chr1	8661891	+
intron-intron	ENST00000219473	ENST00000383791		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000219473	ENST00000253688		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000219473	ENST00000426925		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000219473	ENST00000408919		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000219473	ENST00000465894		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000570191	ENST00000383791		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000570191	ENST00000253688		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000570191	ENST00000426925		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000570191	ENST00000408919		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000570191	ENST00000465894		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000562743	ENST00000383791		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000562743	ENST00000253688		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000562743	ENST00000426925		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000562743	ENST00000408919		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
intron-intron	ENST00000562743	ENST00000465894		ChiTaRS3.1			BQ182103	USP10	chr16	84748792	-	SH3BP5	chr3	15357864	+
5CDS-intron	ENST00000360289	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000360289	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000448642	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000404387	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000298649	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
5CDS-intron	ENST00000359426	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000376621		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000383450		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000441604		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000550904		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000428189		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000551708		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000437917		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000548423		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000383596		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000550942		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000454829		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000552589		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000417834		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000494253	ENST00000551903		ChiTaRS3.1			BC048213	HK1	chr10	71160769	-	GNL1	chr6	1854676	-
intron-intron	ENST00000388922	ENST00000388922		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-3UTR	ENST00000388922	ENST00000550683		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000388922	ENST00000419526		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000388922	ENST00000550084		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
3UTR-intron	ENST00000550683	ENST00000388922		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
3UTR-3UTR	ENST00000550683	ENST00000550683		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
3UTR-intron	ENST00000550683	ENST00000419526		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
3UTR-intron	ENST00000550683	ENST00000550084		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000419526	ENST00000388922		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-3UTR	ENST00000419526	ENST00000550683		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000419526	ENST00000419526		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000419526	ENST00000550084		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000550084	ENST00000388922		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-3UTR	ENST00000550084	ENST00000550683		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000550084	ENST00000419526		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000550084	ENST00000550084		ChiTaRS3.1			CA436333	ACVRL1	chr12	52316651	-	ACVRL1	chr12	52316494	+
intron-intron	ENST00000396402	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396402	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396402	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396402	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000260433	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000260433	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000260433	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000260433	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396404	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396404	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396404	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000396404	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000559878	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000559878	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000559878	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000559878	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000405913	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000405913	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000405913	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000405913	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000557858	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000557858	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000557858	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000557858	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000492852	ENST00000257821		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000492852	ENST00000323180		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000492852	ENST00000418153		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000492852	ENST00000527753		ChiTaRS3.1			BF886753	CYP19A1	chr15	51588343	+	PHF21A	chr11	46000083	+
intron-intron	ENST00000515393	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000515393	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000515393	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000429576	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000429576	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000429576	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000312216	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000312216	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000312216	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505208	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505208	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505208	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000514040	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000514040	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000514040	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505078	ENST00000407073		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505078	ENST00000478804		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-intron	ENST00000505078	ENST00000404807		ChiTaRS3.1			BF841033	MCTP1	chr5	94409506	+	MBD5	chr2	149267006	-
intron-3UTR	ENST00000379705	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379705	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379705	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379681	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379681	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000338947	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000338947	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000379679	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000379679	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000426868	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000426868	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000379673	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000379673	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000355779	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000355779	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-3UTR	ENST00000358477	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
5CDS-intron	ENST00000358477	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000447043	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000447043	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379705		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379681		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000338947		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000379679		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-3UTR	ENST00000494529	ENST00000426868		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000379673		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000355779		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000358477		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000447043		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
intron-intron	ENST00000494529	ENST00000494529		ChiTaRS3.1			AF063823	TRPC4	chr13	38211002	-	TRPC4	chr13	38211002	+
3UTR-3CDS	ENST00000236959	ENST00000236959		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000236959	ENST00000540518		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000236959	ENST00000435675		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000540518	ENST00000236959		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000540518	ENST00000540518		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000540518	ENST00000435675		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000435675	ENST00000236959		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000435675	ENST00000540518		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
3UTR-3CDS	ENST00000435675	ENST00000435675		ChiTaRS3.1			BU675973	ATIC	chr2	216214387	-	ATIC	chr2	216214262	+
intron-intron	ENST00000482518	ENST00000547776		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000329257		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000547010		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000341752		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000549558		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000550693		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000549025		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000549493		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000547446		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000333732		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000546568		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000332712		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000546960		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000482518	ENST00000550833		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000547776		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000329257		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000547010		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000341752		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000549558		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000550693		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000549025		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000549493		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000547446		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000333732		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000546568		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000332712		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000546960		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392054	ENST00000550833		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000547776		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000329257		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000547010		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000341752		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000549558		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000550693		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000549025		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000549493		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000547446		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000333732		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000546568		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000332712		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000546960		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000409462	ENST00000550833		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000547776		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000329257		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000547010		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000341752		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000549558		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000550693		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000549025		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000549493		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000547446		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000333732		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000546568		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000332712		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000546960		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000392055	ENST00000550833		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000547776		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000329257		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000547010		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000341752		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000549558		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000550693		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000549025		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000549493		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000547446		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000333732		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000546568		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000332712		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000546960		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-intron	ENST00000354069	ENST00000550833		ChiTaRS3.1			BQ027803	PID1	chr2	229890080	+	ANKS1B	chr12	100015222	+
intron-3CDS	ENST00000361035	ENST00000361035		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-3CDS	ENST00000361035	ENST00000325945		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-intron	ENST00000361035	ENST00000482991		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-3CDS	ENST00000325945	ENST00000361035		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-3CDS	ENST00000325945	ENST00000325945		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-intron	ENST00000325945	ENST00000482991		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-3CDS	ENST00000482991	ENST00000361035		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-3CDS	ENST00000482991	ENST00000325945		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-intron	ENST00000482991	ENST00000482991		ChiTaRS3.1			BI759383	HAO2	chr1	119941320	+	HAO2	chr1	119934732	+
intron-intron	ENST00000322723	ENST00000372572		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-intron	ENST00000322723	ENST00000372573		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-intron	ENST00000322723	ENST00000361346		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-intron	ENST00000322723	ENST00000361776		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-intron	ENST00000322723	ENST00000545068		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-intron	ENST00000322723	ENST00000372571		ChiTaRS3.1			BF877863	NCL	chr2	232321787	+	FOXJ3	chr1	42684657	-
intron-3CDS	ENST00000374875	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000265371	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000374867	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000395995	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000374821	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000374822	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000374823	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000374816	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
intron-3CDS	ENST00000432372	ENST00000314761		ChiTaRS3.1			BE696383	NRP1	chr10	33496646	+	WDR75	chr2	190334908	+
3UTR-3UTR	ENST00000372600	ENST00000372600		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372600	ENST00000372599		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372600	ENST00000259324		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372600	ENST00000492784		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372599	ENST00000372600		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372599	ENST00000372599		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372599	ENST00000259324		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000372599	ENST00000492784		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000259324	ENST00000372600		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000259324	ENST00000372599		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000259324	ENST00000259324		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
3UTR-3UTR	ENST00000259324	ENST00000492784		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
intron-3UTR	ENST00000492784	ENST00000372600		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
intron-3UTR	ENST00000492784	ENST00000372599		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
intron-3UTR	ENST00000492784	ENST00000259324		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
intron-3UTR	ENST00000492784	ENST00000492784		ChiTaRS3.1			BU618193	LRRC8A	chr9	131679920	+	LRRC8A	chr9	131678719	+
intron-intron	ENST00000450943	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000354888	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393108	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393110	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393106	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000393107	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000409811	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000425223	ENST00000463480		ChiTaRS3.1			AV649273	STEAP3	chr2	119994370	+	MT1DP	chr16	56678412	+
intron-intron	ENST00000406606	ENST00000337554		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000406606	ENST00000396265		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000406606	ENST00000583777		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000406606	ENST00000329563		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371850	ENST00000337554		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371850	ENST00000396265		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371850	ENST00000583777		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371850	ENST00000329563		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371851	ENST00000337554		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371851	ENST00000396265		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371851	ENST00000583777		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000371851	ENST00000329563		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000486113	ENST00000337554		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000486113	ENST00000396265		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000486113	ENST00000583777		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
intron-intron	ENST00000486113	ENST00000329563		ChiTaRS3.1			BM792193	VAV2	chr9	136657309	-	TSPO	chr22	43558793	+
3UTR-intron	ENST00000279873	ENST00000396299		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
3UTR-3UTR	ENST00000279873	ENST00000357727		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
3UTR-intron	ENST00000279873	ENST00000396300		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
3UTR-intron	ENST00000279873	ENST00000409603		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
3UTR-intron	ENST00000279873	ENST00000396298		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
3UTR-intron	ENST00000279873	ENST00000482692		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-intron	ENST00000309334	ENST00000396299		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-3UTR	ENST00000309334	ENST00000357727		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-intron	ENST00000309334	ENST00000396300		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-intron	ENST00000309334	ENST00000409603		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-intron	ENST00000309334	ENST00000396298		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-intron	ENST00000309334	ENST00000482692		ChiTaRS3.1			BF853813	ARID5B	chr10	63853440	+	CREB5	chr7	28860388	+
intron-3UTR	ENST00000377044	ENST00000377044		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377044	ENST00000377066		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000377044	ENST00000396272		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377066	ENST00000377044		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000377066	ENST00000377066		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000377066	ENST00000396272		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000396272	ENST00000377044		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-3UTR	ENST00000396272	ENST00000377066		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
intron-intron	ENST00000396272	ENST00000396272		ChiTaRS3.1			AA782783	TMEM2	chr9	74298655	+	TMEM2	chr9	74299848	-
5CDS-intron	ENST00000534358	ENST00000262809		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000534358	ENST00000596124		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000262809		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000389506	ENST00000596124		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000262809		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-intron	ENST00000354520	ENST00000596124		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000262809		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
3UTR-intron	ENST00000420751	ENST00000596124		ChiTaRS3.1			S77878	KMT2A	chr11	118355030	+	ELL	chr19	18583699	-
5CDS-3UTR	ENST00000437600	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000437600	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000437600	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000437600	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000437600	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000437600	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292538	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292538	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292538	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292538	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292538	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292538	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000393824	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000393824	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000393824	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000393824	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000393824	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000393824	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000547394	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000547394	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000547394	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000547394	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000547394	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000547394	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000360264	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000360264	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000360264	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000360264	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000360264	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000360264	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000425244	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000425244	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000425244	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000425244	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000425244	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000425244	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292535	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292535	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292535	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292535	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000292535	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000292535	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000549414	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000549414	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000549414	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000549414	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000549414	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000549414	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000556210	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000556210	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000556210	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000556210	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000556210	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000556210	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000550008	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000550008	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000550008	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000550008	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000550008	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000550008	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000546411	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000546411	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000546411	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000546411	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000546411	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-intron	ENST00000546411	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-3UTR	ENST00000560541	ENST00000313949		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-3UTR	ENST00000560541	ENST00000371098		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-3UTR	ENST00000560541	ENST00000371075		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-3UTR	ENST00000560541	ENST00000371100		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000371099		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000371102		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-3UTR	ENST00000560541	ENST00000464624		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000306120		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000371095		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000371085		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000354359		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000265620		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000306090		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
3UTR-intron	ENST00000560541	ENST00000371081		ChiTaRS3.1			BP249353	CUX1	chr7	101838885	+	GNAS	chr20	57470666	+
5CDS-3UTR	ENST00000216038	ENST00000216038		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5CDS-3UTR	ENST00000216038	ENST00000451746		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5CDS-intron	ENST00000216038	ENST00000476619		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5CDS-3UTR	ENST00000451746	ENST00000216038		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5CDS-3UTR	ENST00000451746	ENST00000451746		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5CDS-intron	ENST00000451746	ENST00000476619		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5UTR-3UTR	ENST00000476619	ENST00000216038		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5UTR-3UTR	ENST00000476619	ENST00000451746		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
5UTR-intron	ENST00000476619	ENST00000476619		ChiTaRS3.1			BG978503	RTCB	chr22	32802650	-	RTCB	chr22	32783834	+
intron-3CDS	ENST00000530157	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000530157	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000530157	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000530157	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000530157	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000525451	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000525451	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000525451	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000525451	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000525451	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000308162	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000308162	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000308162	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000308162	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000308162	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000527344	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000527344	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000527344	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000527344	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000527344	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000531407	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531407	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531407	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531407	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531407	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000524553	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000524553	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000524553	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000524553	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000524553	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000534769	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000534769	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000534769	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000534769	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000534769	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-3CDS	ENST00000531413	ENST00000389857		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531413	ENST00000331194		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531413	ENST00000389856		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531413	ENST00000553403		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000531413	ENST00000554165		ChiTaRS3.1			BG744763	CFL1	chr11	65622777	+	CCDC88C	chr14	91779621	+
intron-intron	ENST00000367288	ENST00000328252		ChiTaRS3.1			BG010053	LMOD1	chr1	201897630	-	PAPPA	chr9	118931337	-
intron-intron	ENST00000367288	ENST00000534838		ChiTaRS3.1			BG010053	LMOD1	chr1	201897630	-	PAPPA	chr9	118931337	-
intron-intron	ENST00000367288	ENST00000483254		ChiTaRS3.1			BG010053	LMOD1	chr1	201897630	-	PAPPA	chr9	118931337	-
5CDS-intron	ENST00000327443	ENST00000395443		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000327443	ENST00000357496		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000327443	ENST00000424300		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000327443	ENST00000479449		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000426431	ENST00000395443		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000426431	ENST00000357496		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000426431	ENST00000424300		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
5CDS-intron	ENST00000426431	ENST00000479449		ChiTaRS3.1			AW176763	SP1	chr12	53776902	+	QRICH1	chr3	49070480	-
In-frame	ENST00000295598	ENST00000295598		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000295598	ENST00000537345		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000295598	ENST00000369496		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000537345	ENST00000295598		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000537345	ENST00000537345		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000537345	ENST00000369496		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000369496	ENST00000295598		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000369496	ENST00000537345		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
In-frame	ENST00000369496	ENST00000369496		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
intron-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
intron-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
intron-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
intron-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			CV373603	ATP1A1	chr1	116943528	+	ATP1A1	chr1	116930050	+
intron-intron	ENST00000244601	ENST00000324989		ChiTaRS3.1			DA773803	HIST1H2BG	chr6	26216442	-	CRMP1	chr4	5890207	-
intron-intron	ENST00000244601	ENST00000397890		ChiTaRS3.1			DA773803	HIST1H2BG	chr6	26216442	-	CRMP1	chr4	5890207	-
intron-intron	ENST00000244601	ENST00000511535		ChiTaRS3.1			DA773803	HIST1H2BG	chr6	26216442	-	CRMP1	chr4	5890207	-
intron-intron	ENST00000244601	ENST00000512574		ChiTaRS3.1			DA773803	HIST1H2BG	chr6	26216442	-	CRMP1	chr4	5890207	-
intron-3CDS	ENST00000300584	ENST00000300584		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-3CDS	ENST00000300584	ENST00000409931		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-intron	ENST00000300584	ENST00000492078		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-3CDS	ENST00000409931	ENST00000300584		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-3CDS	ENST00000409931	ENST00000409931		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-intron	ENST00000409931	ENST00000492078		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-3CDS	ENST00000492078	ENST00000300584		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-3CDS	ENST00000492078	ENST00000409931		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-intron	ENST00000492078	ENST00000492078		ChiTaRS3.1			BG006543	TBC1D2B	chr15	78305240	-	TBC1D2B	chr15	78301375	+
intron-intron	ENST00000437600	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000437600	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000292538	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000292538	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000393824	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000393824	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000547394	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000547394	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000360264	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000360264	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000425244	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000425244	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000292535	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000292535	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000549414	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000549414	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000556210	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000556210	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000550008	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000550008	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000546411	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000546411	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000560541	ENST00000326793		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000560541	ENST00000472860		ChiTaRS3.1			BF923523	CUX1	chr7	101602608	-	ACAP2	chr3	195059533	-
intron-intron	ENST00000182290	ENST00000578921		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000182290	ENST00000577284		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000483227	ENST00000578921		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000483227	ENST00000577284		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000381121	ENST00000578921		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000381121	ENST00000577284		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000451520	ENST00000578921		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000451520	ENST00000577284		ChiTaRS3.1			BI030413	TSPAN32	chr11	2338868	+	RAB31	chr18	9732470	-
intron-intron	ENST00000455502	ENST00000339021		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000355803		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000325437		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000397514		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000397515		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000403747		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000455502	ENST00000566587		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000455502	ENST00000406620		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000455502	ENST00000402301		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000248572	ENST00000339021		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000355803		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000325437		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000397514		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000397515		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000403747		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000248572	ENST00000566587		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000248572	ENST00000406620		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000248572	ENST00000402301		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000429473	ENST00000339021		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000355803		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000325437		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000397514		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000397515		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000403747		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000429473	ENST00000566587		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000429473	ENST00000406620		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000429473	ENST00000402301		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000430875	ENST00000339021		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000355803		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000325437		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000397514		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000397515		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000403747		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000430875	ENST00000566587		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000430875	ENST00000406620		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000430875	ENST00000402301		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000428834	ENST00000339021		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000355803		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000325437		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000397514		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000397515		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000403747		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000428834	ENST00000566587		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-3UTR	ENST00000428834	ENST00000406620		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000428834	ENST00000402301		ChiTaRS3.1			AW995893	GNGT1	chr7	93516673	-	UBE2I	chr16	1375024	+
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			H24553	ANKRD17	chr4	73958018	+	ANKRD17	chr4	73950965	+
intron-3UTR	ENST00000309311	ENST00000309311		ChiTaRS3.1			BQ347823	EEF2	chr19	3976563	-	EEF2	chr19	3976441	+
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BQ347823	EEF2	chr19	3976563	-	EEF2	chr19	3976441	+
intron-3UTR	ENST00000600720	ENST00000309311		ChiTaRS3.1			BQ347823	EEF2	chr19	3976563	-	EEF2	chr19	3976441	+
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BQ347823	EEF2	chr19	3976563	-	EEF2	chr19	3976441	+
intron-intron	ENST00000472531	ENST00000341056		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396045		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000310758		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000396040		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000442504		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000448602		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000472531	ENST00000479447		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000341056		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396045		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000310758		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000396040		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000442504		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000448602		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491356	ENST00000479447		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000341056		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396045		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000310758		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000396040		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000442504		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000448602		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000340684	ENST00000479447		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000341056		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396045		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000310758		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000396040		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000442504		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000448602		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000543802	ENST00000479447		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000341056		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396045		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000310758		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000396040		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000442504		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000448602		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
intron-intron	ENST00000491848	ENST00000479447		ChiTaRS3.1			AA810423	ZNF124	chr1	247319019	+	ELMO1	chr7	37483683	+
3UTR-3UTR	ENST00000252725	ENST00000252725		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
3UTR-3UTR	ENST00000252725	ENST00000451682		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
3UTR-intron	ENST00000252725	ENST00000474880		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
3UTR-3UTR	ENST00000451682	ENST00000252725		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
3UTR-3UTR	ENST00000451682	ENST00000451682		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
3UTR-intron	ENST00000451682	ENST00000474880		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
intron-3UTR	ENST00000474880	ENST00000252725		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
intron-3UTR	ENST00000474880	ENST00000451682		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
intron-intron	ENST00000474880	ENST00000474880		ChiTaRS3.1			AA972643	ARPC1B	chr7	98992161	-	ARPC1B	chr7	98992236	+
intron-intron	ENST00000537403	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000537403	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000537403	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000537403	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000307712	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000307712	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000307712	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000307712	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000536508	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000536508	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000536508	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000536508	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000545328	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000545328	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000545328	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000545328	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553925	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553925	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553925	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553925	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000548032	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000548032	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000548032	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000548032	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000557280	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000557280	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000557280	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000557280	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553970	ENST00000487099		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553970	ENST00000373584		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553970	ENST00000416460		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000553970	ENST00000344523		ChiTaRS3.1			BE072523	SEC23A	chr14	39561435	+	NR6A1	chr9	127366382	+
intron-intron	ENST00000557401	ENST00000393651		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000557401	ENST00000357311		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000557401	ENST00000489828		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000557401	ENST00000493638		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000356357	ENST00000393651		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000356357	ENST00000357311		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000356357	ENST00000489828		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
intron-intron	ENST00000356357	ENST00000493638		ChiTaRS3.1			BE258233	AREL1	chr14	75130255	-	SRPK2	chr7	104885858	-
5CDS-intron	ENST00000326427	ENST00000540393		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000326427	ENST00000254695		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000326427	ENST00000366401		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000326427	ENST00000542807		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000326427	ENST00000574709		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000335005	ENST00000540393		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000335005	ENST00000254695		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000335005	ENST00000366401		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000335005	ENST00000542807		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000335005	ENST00000574709		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000326407	ENST00000540393		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000326407	ENST00000254695		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000326407	ENST00000366401		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000326407	ENST00000542807		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000326407	ENST00000574709		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000409704	ENST00000540393		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000409704	ENST00000254695		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000409704	ENST00000366401		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000409704	ENST00000542807		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
5CDS-intron	ENST00000409704	ENST00000574709		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
3UTR-intron	ENST00000492029	ENST00000540393		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
3UTR-intron	ENST00000492029	ENST00000254695		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
3UTR-intron	ENST00000492029	ENST00000366401		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
3UTR-intron	ENST00000492029	ENST00000542807		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
3UTR-intron	ENST00000492029	ENST00000574709		ChiTaRS3.1			BF918553	ITM2C	chr2	231741654	-	RAP1GAP2	chr17	2908846	-
intron-intron	ENST00000275605	ENST00000245323		ChiTaRS3.1			BE766933	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
intron-intron	ENST00000395471	ENST00000245323		ChiTaRS3.1			BE766933	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
intron-intron	ENST00000459834	ENST00000245323		ChiTaRS3.1			BE766933	PSPH	chr7	56078961	+	EFNB2	chr13	107163894	+
intron-3UTR	ENST00000442101	ENST00000604411		ChiTaRS3.1			BE072793	ELF1	chr13	41508199	-	TSIX	chrX	73043242	-
intron-3UTR	ENST00000498824	ENST00000604411		ChiTaRS3.1			BE072793	ELF1	chr13	41508199	-	TSIX	chrX	73043242	-
intron-3UTR	ENST00000239882	ENST00000604411		ChiTaRS3.1			BE072793	ELF1	chr13	41508199	-	TSIX	chrX	73043242	-
In-frame	ENST00000398606	ENST00000508803		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382892		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382891		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398606	ENST00000382895		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398606	ENST00000482415		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398606	ENST00000382888		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000514045		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000436793		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000420906		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000503128		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398606	ENST00000398261		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000508803		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382892		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382891		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
In-frame	ENST00000398603	ENST00000382895		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398603	ENST00000482415		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-3UTR	ENST00000398603	ENST00000382888		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000514045		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000436793		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000420906		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000503128		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
5CDS-intron	ENST00000398603	ENST00000398261		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000508803		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382892		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382891		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3CDS	ENST00000498765	ENST00000382895		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3UTR	ENST00000498765	ENST00000482415		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-3UTR	ENST00000498765	ENST00000382888		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000514045		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000436793		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000420906		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000503128		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
3UTR-intron	ENST00000498765	ENST00000398261		ChiTaRS3.1			AW390893	GSTP1	chr11	67352682	-	WHSC1	chr4	1962760	+
intron-intron	ENST00000361099	ENST00000361099		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000361099	ENST00000409465		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000361099	ENST00000540176		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000361099	ENST00000392322		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000361099	ENST00000392323		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000409465	ENST00000361099		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000409465	ENST00000409465		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000409465	ENST00000540176		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000409465	ENST00000392322		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000409465	ENST00000392323		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000540176	ENST00000361099		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000540176	ENST00000409465		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000540176	ENST00000540176		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000540176	ENST00000392322		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000540176	ENST00000392323		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392322	ENST00000361099		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392322	ENST00000409465		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392322	ENST00000540176		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392322	ENST00000392322		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392322	ENST00000392323		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392323	ENST00000361099		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392323	ENST00000409465		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392323	ENST00000540176		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392323	ENST00000392322		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
intron-intron	ENST00000392323	ENST00000392323		ChiTaRS3.1			BF911413	STAT1	chr2	191842560	+	STAT1	chr2	191842346	-
5CDS-intron	ENST00000534358	ENST00000528395		ChiTaRS3.1			GU353067	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
5CDS-intron	ENST00000389506	ENST00000528395		ChiTaRS3.1			GU353067	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
5CDS-intron	ENST00000354520	ENST00000528395		ChiTaRS3.1			GU353067	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
3UTR-intron	ENST00000420751	ENST00000528395		ChiTaRS3.1			GU353067	KMT2A	chr11	118354935	+	TMX2-CTNND1	chr11	57513451	-
intron-intron	ENST00000316752	ENST00000605917		ChiTaRS3.1			BC060323	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-intron	ENST00000407787	ENST00000605917		ChiTaRS3.1			BC060323	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-intron	ENST00000398658	ENST00000605917		ChiTaRS3.1			BC060323	PUS10	chr2	61237978	-	CASC15	chr6	21940138	+
intron-3CDS	ENST00000254108	ENST00000330387		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000254108	ENST00000456390		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000254108	ENST00000452463		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000254108	ENST00000458726		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000254108	ENST00000468127		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000380244	ENST00000330387		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000380244	ENST00000456390		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000380244	ENST00000452463		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000380244	ENST00000458726		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000380244	ENST00000468127		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000568685	ENST00000330387		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000568685	ENST00000456390		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000568685	ENST00000452463		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000568685	ENST00000458726		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000568685	ENST00000468127		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000474990	ENST00000330387		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-3CDS	ENST00000474990	ENST00000456390		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000474990	ENST00000452463		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000474990	ENST00000458726		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
intron-intron	ENST00000474990	ENST00000468127		ChiTaRS3.1			AJ549093	FUS	chr16	31199478	-	CREB3L2	chr7	137593090	-
5CDS-3UTR	ENST00000388825	ENST00000388825		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
5CDS-intron	ENST00000388825	ENST00000521722		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
5CDS-intron	ENST00000388825	ENST00000517973		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
intron-3UTR	ENST00000521722	ENST00000388825		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
intron-intron	ENST00000521722	ENST00000521722		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
intron-intron	ENST00000521722	ENST00000517973		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
3UTR-3UTR	ENST00000517973	ENST00000388825		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
3UTR-intron	ENST00000517973	ENST00000521722		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
3UTR-intron	ENST00000517973	ENST00000517973		ChiTaRS3.1			W25873	GPX3	chr5	150407479	-	GPX3	chr5	150407726	+
intron-intron	ENST00000372899	ENST00000502271		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372899	ENST00000504924		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372899	ENST00000510591		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372899	ENST00000507646		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372901	ENST00000502271		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372901	ENST00000504924		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372901	ENST00000510591		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372901	ENST00000507646		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372883	ENST00000502271		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372883	ENST00000504924		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372883	ENST00000510591		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372883	ENST00000507646		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372903	ENST00000502271		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372903	ENST00000504924		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372903	ENST00000510591		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000372903	ENST00000507646		ChiTaRS3.1			BE708433	UBR2	chr6	42630894	+	ARL15	chr5	53472665	+
intron-intron	ENST00000400926	ENST00000464615		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000400926	ENST00000265758		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000400926	ENST00000423166		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000400926	ENST00000423497		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000341935	ENST00000464615		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000341935	ENST00000265758		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000341935	ENST00000423166		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000341935	ENST00000423497		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000349984	ENST00000464615		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000349984	ENST00000265758		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000349984	ENST00000423166		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000349984	ENST00000423497		ChiTaRS3.1			BQ375803	CCR6	chr6	167484032	+	WBSCR22	chr7	73110180	+
intron-intron	ENST00000397899	ENST00000344157		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000397899	ENST00000355665		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000397899	ENST00000579690		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000397899	ENST00000552105		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000397899	ENST00000550485		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000462314	ENST00000344157		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000462314	ENST00000355665		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000462314	ENST00000579690		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000462314	ENST00000552105		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000462314	ENST00000550485		ChiTaRS3.1			BF096013	KIAA1211L	chr2	99551457	+	YTHDC1	chr4	32575	+
intron-intron	ENST00000422163	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000422163	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000422163	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000422163	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000422163	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000491100	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000491100	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000491100	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000491100	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000491100	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000313601	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000313601	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000313601	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000313601	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000313601	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000536647	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000536647	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000536647	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000536647	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000536647	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000440628	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000440628	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000440628	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000440628	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000440628	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000451956	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000451956	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000451956	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000451956	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-intron	ENST00000451956	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000266027	ENST00000395170		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000266027	ENST00000547306		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000266027	ENST00000316299		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000266027	ENST00000548065		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
3UTR-intron	ENST00000266027	ENST00000552212		ChiTaRS3.1			CK725123	GNAI2	chr3	50296583	-	PRKAG1	chr12	49396800	+
intron-3CDS	ENST00000371348	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371348	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371348	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371348	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371348	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371348	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371344	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371344	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371344	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371344	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371344	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371344	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000234831	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000234831	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000234831	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000234831	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000234831	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000234831	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371341	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371341	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371341	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371341	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371341	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371341	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000470395	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000470395	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000470395	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000470395	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000470395	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000470395	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371337	ENST00000371348		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371337	ENST00000371344		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371337	ENST00000234831		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-3CDS	ENST00000371337	ENST00000371341		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371337	ENST00000470395		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
intron-intron	ENST00000371337	ENST00000371337		ChiTaRS3.1			BU676173	TMEM59	chr1	54502387	+	TMEM59	chr1	54507472	-
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893503	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000264645	ENST00000304457		ChiTaRS3.1			AW377333	CASC3	chr17	38323497	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000376936		ChiTaRS3.1			AW377333	CASC3	chr17	38323497	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000544779		ChiTaRS3.1			AW377333	CASC3	chr17	38323497	-	EXOSC10	chr1	11140175	+
intron-intron	ENST00000264645	ENST00000485606		ChiTaRS3.1			AW377333	CASC3	chr17	38323497	-	EXOSC10	chr1	11140175	+
5UTR-3CDS	ENST00000249014	ENST00000422424		ChiTaRS3.1			AI827663	CDC42EP1	chr22	37962192	+	FAM96B	chr16	66968173	-
intron-3UTR	ENST00000389462	ENST00000323851		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-3UTR	ENST00000389462	ENST00000354944		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-5UTR	ENST00000389462	ENST00000521414		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-3UTR	ENST00000389462	ENST00000537882		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-3UTR	ENST00000389462	ENST00000414097		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-3UTR	ENST00000389462	ENST00000518176		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-intron	ENST00000389462	ENST00000522476		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
intron-intron	ENST00000389462	ENST00000518066		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000309083	ENST00000323851		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000309083	ENST00000354944		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-5UTR	ENST00000309083	ENST00000521414		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000309083	ENST00000537882		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000309083	ENST00000414097		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000309083	ENST00000518176		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-intron	ENST00000309083	ENST00000522476		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-intron	ENST00000309083	ENST00000518066		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000538057	ENST00000323851		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000538057	ENST00000354944		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-5UTR	ENST00000538057	ENST00000521414		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000538057	ENST00000537882		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000538057	ENST00000414097		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-3UTR	ENST00000538057	ENST00000518176		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-intron	ENST00000538057	ENST00000522476		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
3UTR-intron	ENST00000538057	ENST00000518066		ChiTaRS3.1			BU621643	PTMS	chr12	6880063	-	NDRG1	chr8	134250844	+
Frame-shit	ENST00000371714	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371714	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371714	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000371710	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000371710	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000337809	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000337809	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000435686	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000435686	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000447887	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000447887	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000453295	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000453295	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000428468	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000428468	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000530544	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000530544	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000531828	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000531828	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000361556	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000361556	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-3CDS	ENST00000473207	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000473207	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000462759	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000462759	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371714		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000371710		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000337809		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000435686		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000447887		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000453295		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000428468		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000530544		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000531828		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
Frame-shit	ENST00000486942	ENST00000361556		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000473207		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000462759		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
5CDS-intron	ENST00000486942	ENST00000486942		ChiTaRS3.1			AA640663	OSBPL9	chr1	52249652	+	OSBPL9	chr1	52248285	-
intron-intron	ENST00000252711	ENST00000343139		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000395363		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000374949		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000457246		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000453504		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000442315		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000450960		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000466849		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000456258		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000450614		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000441297		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000463379		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000420385		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000383251		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000548014		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000399678		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000399675		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000451947		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000443320		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000416403		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000442680		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000498769		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000550158		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000548597		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000418023		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000552932		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000547425		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000252711	ENST00000444296		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000343139		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000395363		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000374949		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000457246		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000453504		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000442315		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000450960		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000466849		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000456258		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000450614		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000441297		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000463379		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000420385		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000383251		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000548014		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000399678		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000399675		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000451947		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000443320		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000416403		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000442680		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000498769		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000550158		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000548597		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000418023		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000552932		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000547425		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000471378	ENST00000444296		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000343139		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000395363		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000374949		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000457246		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000453504		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000442315		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000450960		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000466849		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000456258		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000450614		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000441297		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000463379		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000420385		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000383251		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000548014		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000399678		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000399675		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000451947		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000443320		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000416403		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000442680		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000498769		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000550158		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000548597		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000418023		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000552932		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000547425		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000404554	ENST00000444296		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000343139		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000395363		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000374949		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000457246		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000453504		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000442315		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000450960		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000466849		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000456258		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000450614		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000441297		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000463379		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000420385		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000383251		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000548014		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000399678		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000399675		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000451947		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000443320		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000416403		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000442680		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000498769		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000550158		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000548597		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000418023		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000552932		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000547425		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000307300	ENST00000444296		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000343139		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000395363		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000374949		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000457246		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000453504		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000442315		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000450960		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000466849		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000456258		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000450614		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000441297		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000463379		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000420385		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000383251		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000548014		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000399678		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000399675		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000451947		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000443320		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000416403		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000442680		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000498769		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000550158		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000548597		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000418023		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000552932		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000547425		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000407129	ENST00000444296		ChiTaRS3.1			BF854863	NDUFA10	chr2	240899303	-	HLA-DQA1	chr6	4042690	+
intron-intron	ENST00000369002	ENST00000583129		ChiTaRS3.1			BF838303	SEC63	chr6	108192413	+	MIR548O2	chr8	29921030	-
intron-intron	ENST00000460009	ENST00000583129		ChiTaRS3.1			BF838303	SEC63	chr6	108192413	+	MIR548O2	chr8	29921030	-
intron-intron	ENST00000476233	ENST00000476233		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000476233	ENST00000354667		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000476233	ENST00000356674		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000354667	ENST00000476233		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000354667	ENST00000354667		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000354667	ENST00000356674		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000356674	ENST00000476233		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000356674	ENST00000354667		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-intron	ENST00000356674	ENST00000356674		ChiTaRS3.1			BF920993	HNRNPA2B1	chr7	26231757	-	HNRNPA2B1	chr7	26232995	-
intron-3CDS	ENST00000027335	ENST00000027335		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000027335	ENST00000441892		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000027335	ENST00000450165		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000441892	ENST00000027335		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000441892	ENST00000441892		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000441892	ENST00000450165		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000450165	ENST00000027335		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000450165	ENST00000441892		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000450165	ENST00000450165		ChiTaRS3.1			AW377543	CDH17	chr8	95186145	+	CDH17	chr8	95161008	+
intron-3CDS	ENST00000358763	ENST00000338368		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-3CDS	ENST00000358763	ENST00000314191		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-5UTR	ENST00000358763	ENST00000523565		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-3CDS	ENST00000332840	ENST00000338368		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-3CDS	ENST00000332840	ENST00000314191		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-5UTR	ENST00000332840	ENST00000523565		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-3CDS	ENST00000467095	ENST00000338368		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-3CDS	ENST00000467095	ENST00000314191		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
intron-5UTR	ENST00000467095	ENST00000523565		ChiTaRS3.1			BF923303	SYN3	chr22	33200159	+	PRKDC	chr8	48827911	-
In-frame	ENST00000261868	ENST00000261868		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
5CDS-intron	ENST00000261868	ENST00000424492		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
5CDS-intron	ENST00000261868	ENST00000535391		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
intron-3CDS	ENST00000424492	ENST00000261868		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
intron-intron	ENST00000424492	ENST00000424492		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
intron-intron	ENST00000424492	ENST00000535391		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
In-frame	ENST00000535391	ENST00000261868		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
5CDS-intron	ENST00000535391	ENST00000424492		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
5CDS-intron	ENST00000535391	ENST00000535391		ChiTaRS3.1			BQ938173	EIF3J	chr15	44843721	+	EIF3J	chr15	44843073	+
5UTR-3CDS	ENST00000505103	ENST00000301831		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-3CDS	ENST00000505103	ENST00000420927		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000505103	ENST00000489118		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000505103	ENST00000414606		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
intron-3CDS	ENST00000510172	ENST00000301831		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
intron-3CDS	ENST00000510172	ENST00000420927		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
intron-intron	ENST00000510172	ENST00000489118		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
intron-intron	ENST00000510172	ENST00000414606		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-3CDS	ENST00000508110	ENST00000301831		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-3CDS	ENST00000508110	ENST00000420927		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000508110	ENST00000489118		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000508110	ENST00000414606		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-3CDS	ENST00000508287	ENST00000301831		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-3CDS	ENST00000508287	ENST00000420927		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000508287	ENST00000489118		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
5UTR-intron	ENST00000508287	ENST00000414606		ChiTaRS3.1			DB094943	F11-AS1	chr4	187421998	-	ULK4	chr3	41961312	-
intron-3CDS	ENST00000411486	ENST00000411486		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000411486	ENST00000441687		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000411486	ENST00000432087		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-intron	ENST00000411486	ENST00000434039		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000441687	ENST00000411486		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000441687	ENST00000441687		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000441687	ENST00000432087		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-intron	ENST00000441687	ENST00000434039		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000432087	ENST00000411486		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000432087	ENST00000441687		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000432087	ENST00000432087		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-intron	ENST00000432087	ENST00000434039		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000434039	ENST00000411486		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000434039	ENST00000441687		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-3CDS	ENST00000434039	ENST00000432087		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
intron-intron	ENST00000434039	ENST00000434039		ChiTaRS3.1			AW393573	HJURP	chr2	234749729	-	HJURP	chr2	234750488	-
5CDS-intron	ENST00000570108	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000570108	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000570108	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000570108	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000570108	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-3UTR	ENST00000570108	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-intron	ENST00000564258	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-intron	ENST00000564258	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-intron	ENST00000564258	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-intron	ENST00000564258	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-intron	ENST00000564258	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5UTR-3UTR	ENST00000564258	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000355341	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000355341	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000355341	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000355341	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000355341	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-3UTR	ENST00000355341	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000336455	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000336455	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000336455	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000336455	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000336455	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-3UTR	ENST00000336455	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000299173	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000299173	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000299173	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000299173	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-intron	ENST00000299173	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
5CDS-3UTR	ENST00000299173	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-intron	ENST00000563530	ENST00000570108		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-intron	ENST00000563530	ENST00000564258		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-intron	ENST00000563530	ENST00000355341		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-intron	ENST00000563530	ENST00000336455		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-intron	ENST00000563530	ENST00000299173		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-3UTR	ENST00000563530	ENST00000563530		ChiTaRS3.1			W07833	ZFYVE19	chr15	41101645	+	ZFYVE19	chr15	41099977	+
intron-3CDS	ENST00000393328	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000393328	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-3CDS	ENST00000393331	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000393331	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-3CDS	ENST00000347630	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000347630	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-3CDS	ENST00000504102	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000504102	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-3CDS	ENST00000503676	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000503676	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-3CDS	ENST00000513080	ENST00000373830		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000513080	ENST00000495995		ChiTaRS3.1			AW298043	SPOP	chr17	47677549	+	TRNAU1AP	chr1	28904053	+
intron-intron	ENST00000498485	ENST00000315596		ChiTaRS3.1			DW438983	PSMB7	chr9	127171672	-	PDS5B	chr13	33214285	+
intron-intron	ENST00000259457	ENST00000315596		ChiTaRS3.1			DW438983	PSMB7	chr9	127171672	-	PDS5B	chr13	33214285	+
intron-intron	ENST00000536392	ENST00000315596		ChiTaRS3.1			DW438983	PSMB7	chr9	127171672	-	PDS5B	chr13	33214285	+
intron-intron	ENST00000341928	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000341928	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000341928	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000341928	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000544123	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000544123	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000544123	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000544123	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000540638	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000540638	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000540638	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000540638	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000342933	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000342933	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000342933	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000342933	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000400111	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000400111	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000400111	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000400111	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542652	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542652	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542652	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542652	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000427684	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000427684	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000427684	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000427684	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542146	ENST00000233121		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542146	ENST00000405074		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542146	ENST00000491354		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
intron-intron	ENST00000542146	ENST00000402218		ChiTaRS3.1			DB026683	EPB41L3	chr18	5489071	-	MAPRE3	chr2	27246863	+
5CDS-intron	ENST00000405315	ENST00000244174		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000405315	ENST00000424344		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000405315	ENST00000369423		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000405315	ENST00000540897		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-intron	ENST00000405315	ENST00000494962		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-intron	ENST00000407032	ENST00000244174		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000407032	ENST00000424344		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000407032	ENST00000369423		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000407032	ENST00000540897		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-intron	ENST00000407032	ENST00000494962		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-intron	ENST00000485798	ENST00000244174		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-3UTR	ENST00000485798	ENST00000424344		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-3UTR	ENST00000485798	ENST00000369423		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-3UTR	ENST00000485798	ENST00000540897		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-intron	ENST00000485798	ENST00000494962		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-intron	ENST00000263273	ENST00000244174		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000263273	ENST00000424344		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000263273	ENST00000369423		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-3UTR	ENST00000263273	ENST00000540897		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
5CDS-intron	ENST00000263273	ENST00000494962		ChiTaRS3.1			CF131283	NUCB1	chr19	49422539	+	IL9R	chrY	59343353	-
intron-3UTR	ENST00000430479	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000430479	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000430479	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000430479	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000430479	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000430479	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000399357	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000399357	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000399357	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000399357	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000399357	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000420159	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000420159	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000420159	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000420159	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000420159	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000343495	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000343495	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000343495	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000343495	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000343495	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000242066	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000242066	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000242066	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000242066	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000242066	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405192	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405192	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405192	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405192	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405192	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405358	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405358	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405358	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405358	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405358	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403527	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403527	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403527	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403527	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403527	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000405218	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405218	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405218	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405218	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000405218	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000403685	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403685	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403685	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403685	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000403685	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000430479		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000399357		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000420159		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000343495		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000242066		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000405192		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3UTR	ENST00000476720	ENST00000405358		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000476720	ENST00000403527		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000476720	ENST00000405218		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000476720	ENST00000403685		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-intron	ENST00000476720	ENST00000476720		ChiTaRS3.1			BE896313	ETV1	chr7	13933740	+	ETV1	chr7	13933638	-
intron-3CDS	ENST00000376874	ENST00000314133		ChiTaRS3.1			BI060853	RILPL1	chr12	124008119	+	COX8A	chr11	63742160	+
intron-3CDS	ENST00000340724	ENST00000314133		ChiTaRS3.1			BI060853	RILPL1	chr12	124008119	+	COX8A	chr11	63742160	+
intron-3CDS	ENST00000544468	ENST00000314133		ChiTaRS3.1			BI060853	RILPL1	chr12	124008119	+	COX8A	chr11	63742160	+
intron-intron	ENST00000452825	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000452825	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000452825	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000452825	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000452825	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000452825	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375401	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000404049	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375379	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000375383	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000470610		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000389672		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000542517		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000514100		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000502694		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
intron-intron	ENST00000465402	ENST00000442602		ChiTaRS3.1			AW818623	KDM5C	chrX	53230872	+	EPHA6	chr3	97285159	-
5CDS-intron	ENST00000356166	ENST00000317357		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
5CDS-intron	ENST00000356166	ENST00000494935		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
5UTR-intron	ENST00000568722	ENST00000317357		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
5UTR-intron	ENST00000568722	ENST00000494935		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
3UTR-intron	ENST00000482749	ENST00000317357		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
3UTR-intron	ENST00000482749	ENST00000494935		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
intron-intron	ENST00000395073	ENST00000317357		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
intron-intron	ENST00000395073	ENST00000494935		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
intron-intron	ENST00000287468	ENST00000317357		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
intron-intron	ENST00000287468	ENST00000494935		ChiTaRS3.1			BG003833	FBRS	chr16	30674010	+	SOBP	chr6	107833035	+
3UTR-3UTR	ENST00000306562	ENST00000306562		ChiTaRS3.1			BF438543	ZNF672	chr1	249142941	-	ZNF672	chr1	249143434	-
3UTR-intron	ENST00000306562	ENST00000502697		ChiTaRS3.1			BF438543	ZNF672	chr1	249142941	-	ZNF672	chr1	249143434	-
intron-3UTR	ENST00000502697	ENST00000306562		ChiTaRS3.1			BF438543	ZNF672	chr1	249142941	-	ZNF672	chr1	249143434	-
intron-intron	ENST00000502697	ENST00000502697		ChiTaRS3.1			BF438543	ZNF672	chr1	249142941	-	ZNF672	chr1	249143434	-
3UTR-intron	ENST00000394997	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000394997	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000394997	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000394997	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000394997	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000394997	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000337138	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
3UTR-intron	ENST00000323441	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557538	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000539097	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000518659		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000545108		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000520393		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000519204		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000520394		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000557206	ENST00000403607		ChiTaRS3.1			BE937463	HIF1A	chr14	62214696	+	TENM2	chr5	166953581	-
intron-intron	ENST00000245323	ENST00000236959		ChiTaRS3.1			BE144253	EFNB2	chr13	107163086	+	ATIC	chr2	216213407	-
intron-intron	ENST00000245323	ENST00000540518		ChiTaRS3.1			BE144253	EFNB2	chr13	107163086	+	ATIC	chr2	216213407	-
intron-intron	ENST00000245323	ENST00000435675		ChiTaRS3.1			BE144253	EFNB2	chr13	107163086	+	ATIC	chr2	216213407	-
intron-3CDS	ENST00000357749	ENST00000357749		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000357749	ENST00000467744		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000357749	ENST00000537751		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000357749	ENST00000358786		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-3CDS	ENST00000467744	ENST00000357749		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000467744	ENST00000467744		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000467744	ENST00000537751		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000467744	ENST00000358786		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-3CDS	ENST00000537751	ENST00000357749		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000537751	ENST00000467744		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000537751	ENST00000537751		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000537751	ENST00000358786		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-3CDS	ENST00000358786	ENST00000357749		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000358786	ENST00000467744		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000358786	ENST00000537751		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-intron	ENST00000358786	ENST00000358786		ChiTaRS3.1			M83773	CHM	chrX	85218712	+	CHM	chrX	85212958	-
intron-3UTR	ENST00000261643	ENST00000362003		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000261643	ENST00000400151		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000261643	ENST00000482726		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000261643	ENST00000470161		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000261643	ENST00000521023		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000261643	ENST00000505655		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000536205	ENST00000362003		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000536205	ENST00000400151		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000536205	ENST00000482726		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000536205	ENST00000470161		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000536205	ENST00000521023		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000536205	ENST00000505655		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000537334	ENST00000362003		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000537334	ENST00000400151		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000537334	ENST00000482726		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000537334	ENST00000470161		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000537334	ENST00000521023		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000537334	ENST00000505655		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000429152	ENST00000362003		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000429152	ENST00000400151		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000429152	ENST00000482726		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000429152	ENST00000470161		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000429152	ENST00000521023		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-3UTR	ENST00000429152	ENST00000505655		ChiTaRS3.1			DB233923	COX10	chr17	13982667	+	PCGF3	chr4	760119	+
intron-intron	ENST00000453654	ENST00000550418		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000553186		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000547372		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000422070		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000535565		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000547427		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000552089		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000547338		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000436368		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000311745		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000355637		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000453654	ENST00000340209		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000550418		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000553186		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000547372		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000422070		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000535565		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000547427		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000552089		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000547338		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000436368		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000311745		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000355637		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000288490	ENST00000340209		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000550418		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000553186		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000547372		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000422070		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000535565		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000547427		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000552089		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000547338		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000436368		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000311745		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000355637		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000424189	ENST00000340209		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000550418		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000553186		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000547372		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000422070		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000535565		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000547427		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000552089		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000547338		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000436368		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000311745		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000355637		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000446122	ENST00000340209		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000550418		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000553186		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000547372		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000422070		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000535565		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000547427		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000552089		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000547338		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000436368		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000311745		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000355637		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000494390	ENST00000340209		ChiTaRS3.1			BF948083	DGKI	chr7	137079042	+	RBFOX1	chr16	6809509	+
intron-intron	ENST00000331159	ENST00000331159		ChiTaRS3.1			AW964963	SOCS7	chr17	36559981	-	SOCS7	chr17	36561292	-
intron-intron	ENST00000331159	ENST00000577233		ChiTaRS3.1			AW964963	SOCS7	chr17	36559981	-	SOCS7	chr17	36561292	-
intron-intron	ENST00000577233	ENST00000331159		ChiTaRS3.1			AW964963	SOCS7	chr17	36559981	-	SOCS7	chr17	36561292	-
intron-intron	ENST00000577233	ENST00000577233		ChiTaRS3.1			AW964963	SOCS7	chr17	36559981	-	SOCS7	chr17	36561292	-
intron-3UTR	ENST00000590602	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000590602	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000590602	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000590602	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000590602	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322933	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322933	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322933	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322933	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000322933	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000592076	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000592076	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000592076	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000592076	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000592076	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000392467	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000392467	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000392467	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000392467	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000392467	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322914	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322914	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322914	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000322914	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000322914	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000306591	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000306591	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000306591	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000306591	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000306591	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000591436	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000591436	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000591436	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000591436	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000591436	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000589553	ENST00000543948		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000589553	ENST00000219599		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000589553	ENST00000415987		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3UTR	ENST00000589553	ENST00000396023		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-intron	ENST00000589553	ENST00000574787		ChiTaRS3.1			BG988143	TMC6	chr17	76121928	-	CRYM	chr16	21269944	+
intron-3CDS	ENST00000527955	ENST00000270142		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-3CDS	ENST00000527955	ENST00000389995		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-3UTR	ENST00000527955	ENST00000470944		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-3CDS	ENST00000367868	ENST00000270142		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-3CDS	ENST00000367868	ENST00000389995		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-3UTR	ENST00000367868	ENST00000470944		ChiTaRS3.1			AW376283	GPA33	chr1	167042668	+	SOD1	chr21	33039646	-
intron-intron	ENST00000523629	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000523629	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000523629	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000523629	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000523629	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000523629	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000396218	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000265814	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000360348	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000436581	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000520724	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000518844	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000522163	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000422361	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000415149		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000402543		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000325805		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000416476		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000406780		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
intron-intron	ENST00000521553	ENST00000473542		ChiTaRS3.1			DQ202697	RUNX1T1	chr8	93070977	-	BBX	chr3	107245348	-
Frame-shit	ENST00000346365	ENST00000346365		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000346365	ENST00000379158		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000346365	ENST00000379155		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379158	ENST00000346365		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379158	ENST00000379158		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379158	ENST00000379155		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379155	ENST00000346365		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379155	ENST00000379158		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
Frame-shit	ENST00000379155	ENST00000379155		ChiTaRS3.1			N45093	NUDT2	chr9	34343294	-	NUDT2	chr9	34343186	+
3UTR-intron	ENST00000466801	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
3UTR-intron	ENST00000466801	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
3UTR-intron	ENST00000466801	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
3UTR-intron	ENST00000466801	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
3UTR-intron	ENST00000466801	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
3UTR-intron	ENST00000466801	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409321	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409115	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000341369	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000409683	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000342287		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000373487		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000373489		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000373483		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000447726		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
5CDS-intron	ENST00000410064	ENST00000538998		ChiTaRS3.1			AW072773	PTMA	chr2	232576664	-	PBX3	chr9	128532111	-
intron-intron	ENST00000402696	ENST00000384994		ChiTaRS3.1			BF948793	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000264998	ENST00000384994		ChiTaRS3.1			BF948793	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000475382	ENST00000384994		ChiTaRS3.1			BF948793	TF	chr3	133462520	-	NEAT1	chr11	65191227	+
intron-intron	ENST00000544392	ENST00000544392		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-3UTR	ENST00000544392	ENST00000369151		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-intron	ENST00000544392	ENST00000340214		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-intron	ENST00000369151	ENST00000544392		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-3UTR	ENST00000369151	ENST00000369151		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-intron	ENST00000369151	ENST00000340214		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-intron	ENST00000340214	ENST00000544392		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-3UTR	ENST00000340214	ENST00000369151		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
intron-intron	ENST00000340214	ENST00000340214		ChiTaRS3.1			BF530533	CACUL1	chr10	120442646	+	CACUL1	chr10	120442576	-
5CDS-intron	ENST00000397256	ENST00000404767		ChiTaRS3.1			BI046943	ARPC4-TTLL3	chr3	9870659	-	INTS1	chr7	1528980	+
5CDS-intron	ENST00000397256	ENST00000389470		ChiTaRS3.1			BI046943	ARPC4-TTLL3	chr3	9870659	-	INTS1	chr7	1528980	+
5CDS-intron	ENST00000397256	ENST00000493531		ChiTaRS3.1			BI046943	ARPC4-TTLL3	chr3	9870659	-	INTS1	chr7	1528980	+
intron-intron	ENST00000556679	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000556679	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000456570	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000477310	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000425368	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000497841	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000417261	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000427888	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000459734	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000455591	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000433503	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000474621	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000424727	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000436692	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000473139	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000399981	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000419920	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000465211	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000375455	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000489605	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000426239	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5CDS-intron	ENST00000419411	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000556679		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000456570		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000477310		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000425368		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000497841		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000417261		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000427888		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000459734		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000455591		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000433503		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000474621		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000424727		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000436692		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000473139		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000399981		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000419920		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000465211		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000375455		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000489605		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000426239		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000419411		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
intron-intron	ENST00000460958	ENST00000460958		ChiTaRS3.1			AI280653	CFB	chr6	3252477	-	CFB	chr6	3252455	+
5UTR-intron	ENST00000429845	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000429845	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000429845	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000429845	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000429845	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000357467	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000357467	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000357467	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000357467	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000357467	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000341435	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000341435	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000341435	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000341435	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
5UTR-intron	ENST00000341435	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000295720	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000295720	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000295720	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000295720	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000295720	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383771	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383771	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383771	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383771	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383771	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383770	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383770	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383770	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383770	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000383770	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000498182	ENST00000381441		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000498182	ENST00000334635		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000498182	ENST00000513800		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000498182	ENST00000381437		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
intron-intron	ENST00000498182	ENST00000451288		ChiTaRS3.1			DA119783	NEK10	chr3	27410715	-	DCUN1D4	chr4	52726708	+
In-frame	ENST00000443765	ENST00000374820		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
In-frame	ENST00000443765	ENST00000452740		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000443765	ENST00000480175		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
In-frame	ENST00000239891	ENST00000374820		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
In-frame	ENST00000239891	ENST00000452740		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000239891	ENST00000480175		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
In-frame	ENST00000413537	ENST00000374820		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
In-frame	ENST00000413537	ENST00000452740		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
5CDS-5UTR	ENST00000413537	ENST00000480175		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000496689	ENST00000374820		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
intron-3CDS	ENST00000496689	ENST00000452740		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
intron-5UTR	ENST00000496689	ENST00000480175		ChiTaRS3.1			HM245394	ALG5	chr13	37559764	-	PIGU	chr20	33176411	-
intron-3UTR	ENST00000355683	ENST00000335754		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000355683	ENST00000488802		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000355683	ENST00000482349		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000355683	ENST00000231909		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-3UTR	ENST00000357479	ENST00000335754		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000357479	ENST00000488802		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000357479	ENST00000482349		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000357479	ENST00000231909		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-3UTR	ENST00000366206	ENST00000335754		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000366206	ENST00000488802		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000366206	ENST00000482349		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-intron	ENST00000366206	ENST00000231909		ChiTaRS3.1			BM724513	STRN3	chr14	31427508	-	ACTR8	chr3	53901738	-
intron-3UTR	ENST00000233154	ENST00000290949		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000233154	ENST00000540149		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000233154	ENST00000602876		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000233154	ENST00000567694		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000451463	ENST00000290949		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000451463	ENST00000540149		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000451463	ENST00000602876		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000451463	ENST00000567694		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000522586	ENST00000290949		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000522586	ENST00000540149		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000522586	ENST00000602876		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000522586	ENST00000567694		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000393349	ENST00000290949		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000393349	ENST00000540149		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000393349	ENST00000602876		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-intron	ENST00000393349	ENST00000567694		ChiTaRS3.1			BI000173	NCK2	chr2	106481280	+	ATP6V0D1	chr16	67472368	-
intron-3UTR	ENST00000199706	ENST00000537871		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000199706	ENST00000439013		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000199706	ENST00000255688		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000199706	ENST00000354445		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000429738	ENST00000537871		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000429738	ENST00000439013		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000429738	ENST00000255688		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000429738	ENST00000354445		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000389675	ENST00000537871		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000389675	ENST00000439013		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000389675	ENST00000255688		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
intron-3UTR	ENST00000389675	ENST00000354445		ChiTaRS3.1			BF360513	MRPL28	chr16	418637	+	RARRES3	chr11	63312122	+
Frame-shit	ENST00000422163	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000422163	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3CDS	ENST00000491100	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
3UTR-3UTR	ENST00000491100	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
Frame-shit	ENST00000313601	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000313601	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
Frame-shit	ENST00000536647	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000536647	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
Frame-shit	ENST00000440628	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000440628	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
Frame-shit	ENST00000451956	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000451956	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
Frame-shit	ENST00000266027	ENST00000422163		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000491100		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000313601		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000536647		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000440628		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000451956		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
5CDS-3UTR	ENST00000266027	ENST00000266027		ChiTaRS3.1			BI051043	GNAI2	chr3	50294232	+	GNAI2	chr3	50293682	-
intron-3UTR	ENST00000345512	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000345512	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000345512	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000345512	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-3UTR	ENST00000373779	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000373779	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000373779	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000373779	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-3UTR	ENST00000356870	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000356870	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000356870	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000356870	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-3UTR	ENST00000323874	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000323874	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000323874	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000323874	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-3UTR	ENST00000428026	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000428026	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000428026	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000428026	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-3UTR	ENST00000460170	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000460170	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000460170	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
3UTR-intron	ENST00000460170	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-3UTR	ENST00000415600	ENST00000262995		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000415600	ENST00000262994		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000415600	ENST00000505913		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-intron	ENST00000415600	ENST00000515388		ChiTaRS3.1			AA907583	PTPRU	chr1	29652910	-	GAB1	chr4	144391895	-
intron-3UTR	ENST00000548589	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
intron-intron	ENST00000548589	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
intron-3UTR	ENST00000548589	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000552699	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000552699	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000552699	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000267115	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000267115	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000267115	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000549385	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000549385	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000549385	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000423828	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000423828	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000423828	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000395006	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000395006	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000395006	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000547798	ENST00000323146		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-intron	ENST00000547798	ENST00000508770		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
3UTR-3UTR	ENST00000547798	ENST00000514199		ChiTaRS3.1			BU945543	TMBIM6	chr12	50156921	+	SLC35A4	chr5	139948594	+
intron-3UTR	ENST00000296794	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000287898	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000545377	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000513042	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000437974	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000426542	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000296799	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000513841	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-3UTR	ENST00000512883	ENST00000581935		ChiTaRS3.1			BE079303	ARHGEF28	chr5	72953589	+	ANKRD20A5P	chr18	14184630	+
intron-intron	ENST00000544021	ENST00000544021		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000544021	ENST00000266556		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000544021	ENST00000545700		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000266556	ENST00000544021		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000266556	ENST00000266556		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000266556	ENST00000545700		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000545700	ENST00000544021		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000545700	ENST00000266556		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-intron	ENST00000545700	ENST00000545700		ChiTaRS3.1			BQ327713	TAPBPL	chr12	6571877	+	TAPBPL	chr12	6571955	-
intron-3UTR	ENST00000361421	ENST00000321545		ChiTaRS3.1			AW629313	TOX	chr8	60008003	+	ZNF543	chr19	57840861	-
intron-intron	ENST00000263212	ENST00000345617		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000263212	ENST00000543185		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000263212	ENST00000541256		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000263212	ENST00000553145		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000407142	ENST00000345617		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000407142	ENST00000543185		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000407142	ENST00000541256		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000407142	ENST00000553145		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000538191	ENST00000345617		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000538191	ENST00000543185		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000538191	ENST00000541256		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000538191	ENST00000553145		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000397495	ENST00000345617		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000397495	ENST00000543185		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000397495	ENST00000541256		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000397495	ENST00000553145		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000486259	ENST00000345617		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000486259	ENST00000543185		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000486259	ENST00000541256		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000486259	ENST00000553145		ChiTaRS3.1			BF870073	PPM1F	chr22	22275218	-	HDAC4	chr2	240223804	-
intron-intron	ENST00000321169	ENST00000260665		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000321169	ENST00000409946		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000321169	ENST00000409659		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000435217	ENST00000260665		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000435217	ENST00000409946		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000435217	ENST00000409659		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000451445	ENST00000260665		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000451445	ENST00000409946		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000451445	ENST00000409659		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000456194	ENST00000260665		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000456194	ENST00000409946		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000456194	ENST00000409659		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000457447	ENST00000260665		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000457447	ENST00000409946		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000457447	ENST00000409659		ChiTaRS3.1			DB349473	HACL1	chr3	15602404	+	LRPPRC	chr2	44152205	+
intron-intron	ENST00000358252	ENST00000309285		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
intron-intron	ENST00000358252	ENST00000542109		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
intron-intron	ENST00000532437	ENST00000309285		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
intron-intron	ENST00000532437	ENST00000542109		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
intron-intron	ENST00000530920	ENST00000309285		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
intron-intron	ENST00000530920	ENST00000542109		ChiTaRS3.1			BM693293	TNKS1BP1	chr11	57075020	-	XCR1	chr3	46066340	+
5CDS-3UTR	ENST00000431239	ENST00000332707		ChiTaRS3.1			CN255653	CHD1L	chr1	146756091	+	XPOT	chr12	64842307	+
5CDS-3UTR	ENST00000369259	ENST00000332707		ChiTaRS3.1			CN255653	CHD1L	chr1	146756091	+	XPOT	chr12	64842307	+
5CDS-3UTR	ENST00000369258	ENST00000332707		ChiTaRS3.1			CN255653	CHD1L	chr1	146756091	+	XPOT	chr12	64842307	+
3UTR-3UTR	ENST00000467213	ENST00000332707		ChiTaRS3.1			CN255653	CHD1L	chr1	146756091	+	XPOT	chr12	64842307	+
5CDS-3UTR	ENST00000361293	ENST00000332707		ChiTaRS3.1			CN255653	CHD1L	chr1	146756091	+	XPOT	chr12	64842307	+
intron-intron	ENST00000389467	ENST00000266037		ChiTaRS3.1			BE771673	SMG1	chr16	18839866	-	DOCK3	chr3	50981977	-
intron-intron	ENST00000446231	ENST00000266037		ChiTaRS3.1			BE771673	SMG1	chr16	18839866	-	DOCK3	chr3	50981977	-
intron-intron	ENST00000565224	ENST00000266037		ChiTaRS3.1			BE771673	SMG1	chr16	18839866	-	DOCK3	chr3	50981977	-
intron-intron	ENST00000567737	ENST00000266037		ChiTaRS3.1			BE771673	SMG1	chr16	18839866	-	DOCK3	chr3	50981977	-
intron-3UTR	ENST00000268489	ENST00000321442		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000268489	ENST00000515791		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000268489	ENST00000502393		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-3UTR	ENST00000397992	ENST00000321442		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000397992	ENST00000515791		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000397992	ENST00000502393		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-3UTR	ENST00000558842	ENST00000321442		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000558842	ENST00000515791		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000558842	ENST00000502393		ChiTaRS3.1			DW460543	ZFHX3	chr16	72848993	+	SFXN1	chr5	174953993	+
intron-intron	ENST00000361654	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000361654	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000361654	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000545889	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000545889	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000545889	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000302528	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000302528	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000302528	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000358808	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000358808	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000358808	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000537178	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000537178	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000537178	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540338	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540338	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540338	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000536634	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000536634	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000536634	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540539	ENST00000361112		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540539	ENST00000260908		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000540539	ENST00000449046		ChiTaRS3.1			BF091853	CLIP1	chr12	122835827	-	SLFN12L	chr17	33825798	-
intron-intron	ENST00000262570	ENST00000412050		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000262570	ENST00000265997		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000448878	ENST00000412050		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000448878	ENST00000265997		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000476546	ENST00000412050		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000476546	ENST00000265997		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000542753	ENST00000412050		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000542753	ENST00000265997		ChiTaRS3.1			BF986123	CHCHD3	chr7	132599669	+	CPEB3	chr10	93964889	+
intron-intron	ENST00000492622	ENST00000394053		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000492622	ENST00000409804		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000492622	ENST00000264090		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000492622	ENST00000477455		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000492622	ENST00000394050		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000492622	ENST00000409601		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000394053		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000409804		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000264090		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000477455		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000394050		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000541916	ENST00000409601		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000394053		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000409804		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000264090		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000477455		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000394050		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000398316	ENST00000409601		ChiTaRS3.1			AW837123	FNDC3A	chr13	49766251	-	MTHFD2	chr2	74427581	+
intron-intron	ENST00000358602	ENST00000358602		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000509867		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000330838		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000358602	ENST00000514252		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000358602		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000509867		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000330838		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000509867	ENST00000514252		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000358602		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000509867		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000330838		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000330838	ENST00000514252		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000358602		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000509867		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000330838		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000514252	ENST00000514252		ChiTaRS3.1			CV423793	ANKRD17	chr4	74099493	+	ANKRD17	chr4	74099383	-
intron-intron	ENST00000371477	ENST00000410075		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-intron	ENST00000371477	ENST00000377802		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-3UTR	ENST00000371477	ENST00000355812		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-3UTR	ENST00000371477	ENST00000409544		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-3UTR	ENST00000371477	ENST00000264447		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-3UTR	ENST00000371477	ENST00000409407		ChiTaRS3.1			AF090903	CDC5L	chr6	44400151	-	ZNF638	chr2	71661875	+
intron-intron	ENST00000375651	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000375651	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000458062	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000608703	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000430065	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000422919	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000441618	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000449876	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000433487	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-intron	ENST00000452298	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000400040	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000335183		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000543789		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000442975		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000458126		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000556102		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000541304		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000556305		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
3UTR-intron	ENST00000383389	ENST00000395577		ChiTaRS3.1			DB356803	HSPA1A	chr6	3079209	-	CDKN3	chr14	54875192	-
intron-3CDS	ENST00000549578	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549578	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549578	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000360579	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000360579	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000552130	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000552130	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000447578	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000447578	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000546588	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000546588	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000549970	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000549970	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000360579		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000552130		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000447578		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000546588		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-3CDS	ENST00000551655	ENST00000549970		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000551655	ENST00000551655		ChiTaRS3.1			AI768953	VPS29	chr12	110929600	+	VPS29	chr12	110930911	-
intron-intron	ENST00000268035	ENST00000415149		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000268035	ENST00000402543		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000268035	ENST00000325805		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000268035	ENST00000416476		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000268035	ENST00000406780		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000268035	ENST00000473542		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000415149		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000402543		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000325805		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000416476		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000406780		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000558762	ENST00000473542		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000415149		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000402543		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000325805		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000416476		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000406780		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000560432	ENST00000473542		ChiTaRS3.1			AW992173	IGF1R	chr15	99264092	+	BBX	chr3	107370186	+
intron-intron	ENST00000329734	ENST00000329734		ChiTaRS3.1			BU608343	IRX3	chr16	54317637	+	IRX3	chr16	54317835	-
intron-3CDS	ENST00000358767	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000358767	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000358767	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000358767	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000358767	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000358767	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000546225	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000546225	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000546225	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000546225	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000546225	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000546225	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000335894	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000335894	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000335894	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000335894	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000335894	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000335894	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000360277	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000360277	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000360277	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000360277	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000360277	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000360277	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000512104	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000512104	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000512104	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000512104	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000512104	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000512104	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000560790	ENST00000358767		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000560790	ENST00000546225		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000560790	ENST00000335894		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-3CDS	ENST00000560790	ENST00000360277		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000560790	ENST00000512104		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000560790	ENST00000560790		ChiTaRS3.1			BE079513	IQCH	chr15	67709269	-	IQCH	chr15	67692503	+
intron-intron	ENST00000401884	ENST00000373943		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000401884	ENST00000468761		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000342631	ENST00000373943		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000342631	ENST00000468761		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000405547	ENST00000373943		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000405547	ENST00000468761		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000310397	ENST00000373943		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000310397	ENST00000468761		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000469006	ENST00000373943		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
intron-intron	ENST00000469006	ENST00000468761		ChiTaRS3.1			BF379103	SNED1	chr2	242223241	+	STX12	chr1	28112545	-
5CDS-intron	ENST00000342382	ENST00000357393		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000342382	ENST00000370001		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000342382	ENST00000477908		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000342382	ENST00000369994		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000342382	ENST00000369995		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000303525	ENST00000357393		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000303525	ENST00000370001		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000303525	ENST00000477908		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000303525	ENST00000369994		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000303525	ENST00000369995		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000382021	ENST00000357393		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000382021	ENST00000370001		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000382021	ENST00000477908		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000382021	ENST00000369994		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-intron	ENST00000382021	ENST00000369995		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
intron-intron	ENST00000512136	ENST00000357393		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
intron-intron	ENST00000512136	ENST00000370001		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
intron-intron	ENST00000512136	ENST00000477908		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
intron-intron	ENST00000512136	ENST00000369994		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
intron-intron	ENST00000512136	ENST00000369995		ChiTaRS3.1			BF919493	DNAJC21	chr5	34945098	+	AKNAD1	chr1	109473768	+
5CDS-3UTR	ENST00000449802	ENST00000402905		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000444724		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000471271		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000545253		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000414439		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000428585		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000545262		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000456821		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000434998		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-3UTR	ENST00000449802	ENST00000320443		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
5CDS-intron	ENST00000449802	ENST00000438828		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-3UTR	ENST00000478884	ENST00000402905		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000444724		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000471271		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000545253		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000414439		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000428585		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000545262		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000456821		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000434998		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-3UTR	ENST00000478884	ENST00000320443		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
3UTR-intron	ENST00000478884	ENST00000438828		ChiTaRS3.1			AK096293	NBEAL1	chr2	203922179	+	CARF	chr2	203850832	+
intron-3UTR	ENST00000297056	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000297056	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000297056	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000297056	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000297056	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000297056	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000425398	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000425398	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000425398	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000425398	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000425398	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000425398	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000436575	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000436575	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000436575	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000436575	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000436575	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000436575	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000428902	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000428902	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000428902	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000428902	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000428902	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000428902	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000421761	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000421761	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000421761	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000421761	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000421761	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000421761	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000479922	ENST00000249647		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000479922	ENST00000566141		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000479922	ENST00000564153		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-3UTR	ENST00000479922	ENST00000349777		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000479922	ENST00000567094		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000479922	ENST00000397138		ChiTaRS3.1			CB052513	DAGLB	chr7	6519405	-	SNAP23	chr15	42824560	+
intron-intron	ENST00000593234	ENST00000593234		ChiTaRS3.1			BU533493	LINC00907	chr18	40210659	+	LINC00907	chr18	40199436	+
5CDS-intron	ENST00000508628	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000508628	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000456466	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000582970	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
5CDS-intron	ENST00000319921	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000336301	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000259608		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
intron-intron	ENST00000427003	ENST00000474403		ChiTaRS3.1			AK093793	RNF213	chr17	78261757	+	SIT1	chr9	35650700	-
3UTR-3UTR	ENST00000395468	ENST00000395468		ChiTaRS3.1			AI479293	MAPK1IP1L	chr14	55532608	-	MAPK1IP1L	chr14	55532450	+
3UTR-intron	ENST00000395468	ENST00000554364		ChiTaRS3.1			AI479293	MAPK1IP1L	chr14	55532608	-	MAPK1IP1L	chr14	55532450	+
intron-3UTR	ENST00000554364	ENST00000395468		ChiTaRS3.1			AI479293	MAPK1IP1L	chr14	55532608	-	MAPK1IP1L	chr14	55532450	+
intron-intron	ENST00000554364	ENST00000554364		ChiTaRS3.1			AI479293	MAPK1IP1L	chr14	55532608	-	MAPK1IP1L	chr14	55532450	+
3UTR-intron	ENST00000446856	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000264758	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000398125	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000513328	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000503455	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000355842	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
intron-intron	ENST00000398123	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
3UTR-intron	ENST00000398129	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
intron-intron	ENST00000538860	ENST00000384994		ChiTaRS3.1			BI028313	ADD1	chr4	2930765	+	NEAT1	chr11	65192235	-
intron-intron	ENST00000539068	ENST00000541428		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000379454		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000523897		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000522919		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000356457		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000518068		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000517903		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000445642		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000517847		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000522835		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000517856		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000389204		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000522603		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000379449		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000539068	ENST00000517661		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000541428		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000379454		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000523897		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000522919		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000356457		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000518068		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000517903		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000445642		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000517847		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000522835		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000517856		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000389204		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000522603		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000379449		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000536438	ENST00000517661		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000541428		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000379454		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000523897		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000522919		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000356457		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000518068		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000517903		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000445642		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000517847		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000522835		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000517856		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000389204		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000522603		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000379449		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000357266	ENST00000517661		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000541428		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000379454		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000523897		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000522919		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000356457		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000518068		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000517903		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000445642		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000517847		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000522835		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000517856		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000389204		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000522603		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000379449		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000540787	ENST00000517661		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000541428		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000379454		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000523897		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000522919		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000356457		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000518068		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000517903		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000445642		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000517847		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000522835		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000517856		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000389204		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000522603		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000379449		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
intron-intron	ENST00000542713	ENST00000517661		ChiTaRS3.1			BE162083	FKBP5	chr6	35588908	+	ASPH	chr8	62438954	+
5UTR-3CDS	ENST00000359314	ENST00000359314		ChiTaRS3.1			AI564093	CD2AP	chr6	47445776	-	CD2AP	chr6	47575716	-
5UTR-3UTR	ENST00000359314	ENST00000486693		ChiTaRS3.1			AI564093	CD2AP	chr6	47445776	-	CD2AP	chr6	47575716	-
intron-3CDS	ENST00000486693	ENST00000359314		ChiTaRS3.1			AI564093	CD2AP	chr6	47445776	-	CD2AP	chr6	47575716	-
intron-3UTR	ENST00000486693	ENST00000486693		ChiTaRS3.1			AI564093	CD2AP	chr6	47445776	-	CD2AP	chr6	47575716	-
Frame-shit	ENST00000253506	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000253506	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000253506	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000591814	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000591814	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000591814	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000397790	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000397790	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000397790	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000587635	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000587635	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000587635	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000427363	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000427363	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000427363	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000542384	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000542384	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000542384	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000318065	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000318065	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000318065	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000545796	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000545796	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000545796	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000592223	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000592223	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000592223	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000329101	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000329101	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000329101	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000586434	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
Frame-shit	ENST00000586434	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
5CDS-intron	ENST00000586434	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000590172	ENST00000253506		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-3CDS	ENST00000590172	ENST00000591814		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000397790		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000587635		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000427363		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000542384		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000318065		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000545796		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000592223		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000329101		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000586434		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000590172	ENST00000590172		ChiTaRS3.1			BQ710263	NFATC1	chr18	77170952	-	NFATC1	chr18	77171050	+
intron-intron	ENST00000393249	ENST00000393249		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393249	ENST00000261183		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393249	ENST00000393250		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393249	ENST00000552178		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000261183	ENST00000393249		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000261183	ENST00000261183		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000261183	ENST00000393250		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000261183	ENST00000552178		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393250	ENST00000393249		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393250	ENST00000261183		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393250	ENST00000393250		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000393250	ENST00000552178		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000552178	ENST00000393249		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000552178	ENST00000261183		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000552178	ENST00000393250		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
intron-intron	ENST00000552178	ENST00000552178		ChiTaRS3.1			W16453	OSBPL8	chr12	76901084	-	OSBPL8	chr12	76901271	-
3UTR-3CDS	ENST00000425597	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
3UTR-3CDS	ENST00000562212	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
intron-3CDS	ENST00000565923	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
3UTR-3CDS	ENST00000545456	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
3UTR-3CDS	ENST00000361900	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
intron-3CDS	ENST00000568081	ENST00000374672		ChiTaRS3.1			AK026253	SCAMP5	chr15	75313394	+	KLF4	chr9	110249840	-
intron-intron	ENST00000221561	ENST00000221561		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-5UTR	ENST00000221561	ENST00000327141		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000221561	ENST00000592330		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000221561	ENST00000586839		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000327141	ENST00000221561		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-5UTR	ENST00000327141	ENST00000327141		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000327141	ENST00000592330		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000327141	ENST00000586839		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000592330	ENST00000221561		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-5UTR	ENST00000592330	ENST00000327141		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000592330	ENST00000592330		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000592330	ENST00000586839		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000586839	ENST00000221561		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-5UTR	ENST00000586839	ENST00000327141		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000586839	ENST00000592330		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
intron-intron	ENST00000586839	ENST00000586839		ChiTaRS3.1			BG774193	AES	chr19	3055697	-	AES	chr19	3062327	-
3UTR-3UTR	ENST00000379261	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000379261	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000379261	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000379261	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000379261	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000379261	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000416382	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000416382	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000416382	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000416382	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000416382	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000416382	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000450189	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000450189	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000450189	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000450189	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000450189	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000450189	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000542579	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000542579	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000542579	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000542579	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000542579	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000542579	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000399850	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000399850	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000399850	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000399850	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000399850	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000399850	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000417956	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000417956	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000417956	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000417956	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000417956	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000417956	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000354440	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000354440	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000354440	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000354440	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000354440	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000354440	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000427450	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000427450	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000427450	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000427450	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000427450	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000427450	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000315874	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000315874	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000315874	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000315874	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-3UTR	ENST00000315874	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
3UTR-intron	ENST00000315874	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000608830	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000608830	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000608830	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000608830	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000608830	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000608830	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000609692	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000609692	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000609692	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000609692	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000609692	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000609692	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000354897	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000354897	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000354897	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000354897	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000354897	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000354897	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000537122	ENST00000379261		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000416382		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000537122	ENST00000450189		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000542579		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000399850		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000417956		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000537122	ENST00000354440		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000537122	ENST00000427450		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-3UTR	ENST00000537122	ENST00000315874		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000608830		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000609692		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000354897		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000537122	ENST00000537122		ChiTaRS3.1			CB218433	CELF2	chr10	11375699	+	CELF2	chr10	11374354	+
intron-intron	ENST00000409907	ENST00000375300		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000292055		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000375288		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000434315		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000542607		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000446921		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000409907	ENST00000488337		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000375300		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000292055		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000375288		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000434315		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000542607		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000446921		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000309507	ENST00000488337		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000375300		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000292055		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000375288		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000434315		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000542607		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000446921		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000431676	ENST00000488337		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000375300		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000292055		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000375288		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000434315		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000542607		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000446921		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-intron	ENST00000465621	ENST00000488337		ChiTaRS3.1			AW772133	IQCA1	chr2	237279313	-	SIK3	chr11	116933911	-
intron-3CDS	ENST00000262158	ENST00000262158		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000262158	ENST00000591805		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000262158	ENST00000589634		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-5UTR	ENST00000262158	ENST00000585986		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000591805	ENST00000262158		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000591805	ENST00000591805		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000591805	ENST00000589634		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-5UTR	ENST00000591805	ENST00000585986		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000589634	ENST00000262158		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000589634	ENST00000591805		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000589634	ENST00000589634		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-5UTR	ENST00000589634	ENST00000585986		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000585986	ENST00000262158		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000585986	ENST00000591805		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000585986	ENST00000589634		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-5UTR	ENST00000585986	ENST00000585986		ChiTaRS3.1			AW961693	SMAD7	chr18	46447544	-	SMAD7	chr18	46448042	-
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB137683	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3UTR	ENST00000487694	ENST00000265070		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-intron	ENST00000487694	ENST00000512668		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-3UTR	ENST00000461745	ENST00000265070		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-intron	ENST00000461745	ENST00000512668		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-3UTR	ENST00000332191	ENST00000265070		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-intron	ENST00000332191	ENST00000512668		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-3UTR	ENST00000469233	ENST00000265070		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-intron	ENST00000469233	ENST00000512668		ChiTaRS3.1			BM472473	ROBO2	chr3	76604881	+	GOLPH3	chr5	32125015	+
intron-intron	ENST00000511685	ENST00000370010		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000511685	ENST00000370014		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000511685	ENST00000447266		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000511685	ENST00000541192		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000511685	ENST00000327284		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000511685	ENST00000436928		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000370010		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000370014		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000447266		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000541192		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000327284		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000406950	ENST00000436928		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000370010		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000370014		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000447266		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000541192		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000327284		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-intron	ENST00000502950	ENST00000436928		ChiTaRS3.1			CA336313	TENM3	chr4	183292390	-	SENP6	chr6	76356222	-
intron-3UTR	ENST00000261192	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000261192	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000538118	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000538118	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000342945	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000342945	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000539282	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000539282	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000539780	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000539780	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000544418	ENST00000302060		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-intron	ENST00000544418	ENST00000505268		ChiTaRS3.1			AI399863	BCAT1	chr12	24964353	+	DNAJC18	chr5	138746937	+
intron-3UTR	ENST00000238789	ENST00000359933		ChiTaRS3.1			AA580273	ATAD2B	chr2	24149926	+	ATG2B	chr14	96751093	+
intron-intron	ENST00000238789	ENST00000261834		ChiTaRS3.1			AA580273	ATAD2B	chr2	24149926	+	ATG2B	chr14	96751093	+
intron-3UTR	ENST00000474583	ENST00000359933		ChiTaRS3.1			AA580273	ATAD2B	chr2	24149926	+	ATG2B	chr14	96751093	+
intron-intron	ENST00000474583	ENST00000261834		ChiTaRS3.1			AA580273	ATAD2B	chr2	24149926	+	ATG2B	chr14	96751093	+
intron-3CDS	ENST00000499869	ENST00000499869		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000499869	ENST00000382451		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000499869	ENST00000382452		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000499869	ENST00000515743		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000499869	ENST00000502702		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382451	ENST00000499869		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382451	ENST00000382451		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382451	ENST00000382452		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000382451	ENST00000515743		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000382451	ENST00000502702		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382452	ENST00000499869		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382452	ENST00000382451		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000382452	ENST00000382452		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000382452	ENST00000515743		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000382452	ENST00000502702		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000515743	ENST00000499869		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000515743	ENST00000382451		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000515743	ENST00000382452		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000515743	ENST00000515743		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000515743	ENST00000502702		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000502702	ENST00000499869		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000502702	ENST00000382451		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-3CDS	ENST00000502702	ENST00000382452		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000502702	ENST00000515743		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-5UTR	ENST00000502702	ENST00000502702		ChiTaRS3.1			BF762373	WDR1	chr4	10089393	-	WDR1	chr4	10089979	+
intron-intron	ENST00000373233	ENST00000319622		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000565184		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000389093		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000335181		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000568883		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000449901		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000565154		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373233	ENST00000568459		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000319622		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000565184		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000389093		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000335181		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000568883		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000449901		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000565154		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000309279	ENST00000568459		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000319622		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000565184		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000389093		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000335181		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000568883		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000449901		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000565154		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000373222	ENST00000568459		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000319622		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000565184		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000389093		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000335181		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000568883		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000449901		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000565154		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-intron	ENST00000480022	ENST00000568459		ChiTaRS3.1			BF765763	CHD6	chr20	40081436	+	PKM	chr15	72494962	-
intron-3CDS	ENST00000553400	ENST00000375110		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000553400	ENST00000319778		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000553400	ENST00000263062		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-intron	ENST00000553400	ENST00000480402		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000330836	ENST00000375110		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000330836	ENST00000319778		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000330836	ENST00000263062		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-intron	ENST00000330836	ENST00000480402		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000544005	ENST00000375110		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000544005	ENST00000319778		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-3CDS	ENST00000544005	ENST00000263062		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-intron	ENST00000544005	ENST00000480402		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
Frame-shit	ENST00000555054	ENST00000375110		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
Frame-shit	ENST00000555054	ENST00000319778		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
Frame-shit	ENST00000555054	ENST00000263062		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
5CDS-intron	ENST00000555054	ENST00000480402		ChiTaRS3.1			BE717493	DDX24	chr14	94517310	-	EPC1	chr10	32576153	+
intron-intron	ENST00000323482	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000323482	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000323482	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000323482	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000323482	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000323482	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000323482	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000432802	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000432802	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000432802	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000432802	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000432802	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000432802	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000432802	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000376726	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000376726	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000376726	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000376726	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000376726	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000376726	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000376726	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000484396	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000484396	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000484396	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000484396	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000484396	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000484396	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000484396	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000537502	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000537502	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000537502	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000537502	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000537502	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000537502	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000537502	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000542618	ENST00000509156		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000542618	ENST00000306938		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000542618	ENST00000399534		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000542618	ENST00000505606		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-3UTR	ENST00000542618	ENST00000509634		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000542618	ENST00000509931		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000542618	ENST00000499046		ChiTaRS3.1			BF790853	ACSS1	chr20	24987732	-	ZNF131	chr5	43175422	+
intron-intron	ENST00000295373	ENST00000379081		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000379087		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000379080		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000379084		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000379089		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000445726		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000297620		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000295373	ENST00000379078		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379081		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379087		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379080		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379084		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379089		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000445726		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000297620		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000479345	ENST00000379078		ChiTaRS3.1			CV413933	DHX57	chr2	39088098	+	FAM219A	chr9	34450907	+
intron-intron	ENST00000455147	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000455147	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000455147	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000455147	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266563	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266563	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266563	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266563	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000545220	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000545220	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000545220	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000545220	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000434354	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000434354	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000434354	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000434354	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000420616	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000420616	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000420616	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000420616	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000412720	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000412720	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000412720	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000412720	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266564	ENST00000506447		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266564	ENST00000325971		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266564	ENST00000430049		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
intron-intron	ENST00000266564	ENST00000540847		ChiTaRS3.1			AA972423	PEX5	chr12	7370996	-	CEP192	chr18	13128201	-
In-frame	ENST00000302327	ENST00000302327		ChiTaRS3.1			AI745293	ING2	chr4	184431456	+	ING2	chr4	184431817	-
In-frame	ENST00000302327	ENST00000434682		ChiTaRS3.1			AI745293	ING2	chr4	184431456	+	ING2	chr4	184431817	-
In-frame	ENST00000434682	ENST00000302327		ChiTaRS3.1			AI745293	ING2	chr4	184431456	+	ING2	chr4	184431817	-
In-frame	ENST00000434682	ENST00000434682		ChiTaRS3.1			AI745293	ING2	chr4	184431456	+	ING2	chr4	184431817	-
intron-intron	ENST00000566780	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000566780	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000406884	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000539474	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000402655	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000408984	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000355860	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000565791	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000283558		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375630		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000487903		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000375645		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
intron-intron	ENST00000569818	ENST00000419448		ChiTaRS3.1			BF873333	WWOX	chr16	78534312	-	ATP11A	chr13	113464897	-
In-frame	ENST00000433119	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
In-frame	ENST00000433119	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000295757	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000295757	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000402259	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000402259	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000402271	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000402271	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000446613	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000446613	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
In-frame	ENST00000404548	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
In-frame	ENST00000404548	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000404040	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000404040	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
In-frame	ENST00000405025	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
In-frame	ENST00000405025	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000522202	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000522202	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000437379	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
Frame-shit	ENST00000437379	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
intron-3CDS	ENST00000495099	ENST00000402886		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
intron-3CDS	ENST00000495099	ENST00000338863		ChiTaRS3.1			BE838173	HDAC11	chr3	13545627	-	TEAD3	chr6	35445131	+
intron-3CDS	ENST00000366997	ENST00000320934		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-3UTR	ENST00000366997	ENST00000540028		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-5UTR	ENST00000366997	ENST00000529458		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-3CDS	ENST00000366996	ENST00000320934		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-3UTR	ENST00000366996	ENST00000540028		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-5UTR	ENST00000366996	ENST00000529458		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-3CDS	ENST00000488600	ENST00000320934		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-3UTR	ENST00000488600	ENST00000540028		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-5UTR	ENST00000488600	ENST00000529458		ChiTaRS3.1			AW948393	LPGAT1	chr1	211972658	+	PCSK7	chr11	117077012	-
intron-intron	ENST00000360534	ENST00000422508		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000360534	ENST00000437994		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000360534	ENST00000287097		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000360534	ENST00000474094		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000491591	ENST00000422508		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000491591	ENST00000437994		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000491591	ENST00000287097		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
intron-intron	ENST00000491591	ENST00000474094		ChiTaRS3.1			BG231728	DPP4	chr2	162916134	+	CD109	chr6	74457269	-
5CDS-intron	ENST00000353801	ENST00000341533		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000353801	ENST00000417955		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000353801	ENST00000465647		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000353801	ENST00000455523		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000353801	ENST00000427257		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371646	ENST00000341533		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371646	ENST00000417955		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371646	ENST00000465647		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371646	ENST00000455523		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371646	ENST00000427257		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371554	ENST00000341533		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371554	ENST00000417955		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371554	ENST00000465647		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371554	ENST00000455523		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
5CDS-intron	ENST00000371554	ENST00000427257		ChiTaRS3.1			BP212813	HSP90AB1	chr6	44218152	+	NAPEPLD	chr7	102760887	-
intron-3UTR	ENST00000588776	ENST00000497512		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000588776	ENST00000316355		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000588776	ENST00000354403		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000588776	ENST00000502280		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000588776	ENST00000395640		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000588776	ENST00000509972		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000497512		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000316355		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000354403		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000502280		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000395640		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000222125	ENST00000509972		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000497512		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000316355		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000354403		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000502280		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000395640		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
intron-3UTR	ENST00000452990	ENST00000509972		ChiTaRS3.1			AA570323	CAPS	chr19	5916529	+	CCNG2	chr4	78079780	-
3UTR-3CDS	ENST00000253063	ENST00000253063		ChiTaRS3.1			CN366113	SESN2	chr1	28608467	+	SESN2	chr1	28598892	+
3UTR-intron	ENST00000432648	ENST00000371227		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371249		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000306402		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000353505		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371246		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000347291		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000393949		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371247		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000607232		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371245		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000361941		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000277982		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000354106		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371239		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000371241		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000432648	ENST00000474353		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371227		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371249		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000306402		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000353505		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371246		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000347291		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000393949		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371247		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000607232		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371245		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000361941		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000277982		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000354106		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371239		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000371241		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000446189	ENST00000474353		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371227		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371249		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000306402		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000353505		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371246		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000347291		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000393949		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371247		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000607232		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371245		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000361941		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000277982		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000354106		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371239		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000371241		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
3UTR-intron	ENST00000372984	ENST00000474353		ChiTaRS3.1			BF925553	AKIRIN1	chr1	39470360	-	SORBS1	chr10	97244375	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			BE076963	NEAT1	chr11	65196807	-	NEAT1	chr11	65197697	-
intron-intron	ENST00000538442	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000538442	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000538442	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000399150	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000399150	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000399150	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000252229	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000252229	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000252229	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000427115	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000427115	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000427115	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000442104	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000442104	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000442104	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451603	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451603	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451603	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000546706	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000546706	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000546706	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000438954	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000438954	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000438954	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000458032	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000458032	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000458032	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551950	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551950	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551950	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000437651	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000437651	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000437651	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000383514	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000383514	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000383514	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551608	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551608	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551608	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436531	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436531	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436531	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436655	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436655	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000436655	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000547574	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000547574	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000547574	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000400313	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000400313	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000400313	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428416	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428416	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428416	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000549014	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000549014	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000549014	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428059	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428059	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000428059	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451789	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451789	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000451789	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000443156	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000443156	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000443156	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551960	ENST00000357195		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551960	ENST00000345514		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
intron-intron	ENST00000551960	ENST00000443726		ChiTaRS3.1			EL582473	MICB	chr6	2586310	-	BCL11B	chr14	99655805	-
3UTR-intron	ENST00000394123	ENST00000360003		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
3UTR-intron	ENST00000394123	ENST00000369077		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
3UTR-intron	ENST00000394123	ENST00000466047		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
intron-intron	ENST00000543466	ENST00000360003		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
intron-intron	ENST00000543466	ENST00000369077		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
intron-intron	ENST00000543466	ENST00000466047		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
3UTR-intron	ENST00000356245	ENST00000360003		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
3UTR-intron	ENST00000356245	ENST00000369077		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
3UTR-intron	ENST00000356245	ENST00000466047		ChiTaRS3.1			AW798793	G3BP1	chr5	151184159	+	MCMBP	chr10	121591742	+
intron-intron	ENST00000310682	ENST00000256413		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000310682	ENST00000382998		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000310682	ENST00000592658		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
3UTR-intron	ENST00000394266	ENST00000256413		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
3UTR-intron	ENST00000394266	ENST00000382998		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
3UTR-intron	ENST00000394266	ENST00000592658		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000219315	ENST00000256413		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000219315	ENST00000382998		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000219315	ENST00000592658		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000418480	ENST00000256413		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000418480	ENST00000382998		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000418480	ENST00000592658		ChiTaRS3.1			DB308733	SETD6	chr16	58554139	+	CTIF	chr18	46094713	-
intron-intron	ENST00000527422	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000527422	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000527422	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000527422	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
3UTR-intron	ENST00000356386	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
3UTR-intron	ENST00000356386	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
3UTR-intron	ENST00000356386	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
3UTR-intron	ENST00000356386	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396934	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396934	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396934	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396934	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000377708	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000377708	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000377708	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000377708	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396948	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396948	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396948	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000396948	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000532994	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000532994	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000532994	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000532994	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000508906	ENST00000533902		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000508906	ENST00000280258		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000508906	ENST00000441050		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000508906	ENST00000531521		ChiTaRS3.1			AI927603	BTN3A2	chr6	26378086	-	PRSS23	chr11	86659837	+
intron-intron	ENST00000512921	ENST00000512921		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000512921	ENST00000507794		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000512921	ENST00000264864		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000507794	ENST00000512921		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000507794	ENST00000507794		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000507794	ENST00000264864		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000264864	ENST00000512921		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000264864	ENST00000507794		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-intron	ENST00000264864	ENST00000264864		ChiTaRS3.1			AW936523	PI4K2B	chr4	25255306	+	PI4K2B	chr4	25238182	+
intron-3UTR	ENST00000275732	ENST00000275732		ChiTaRS3.1			BC018563	GIGYF1	chr7	100278105	-	GIGYF1	chr7	100277541	+
intron-intron	ENST00000275732	ENST00000471340		ChiTaRS3.1			BC018563	GIGYF1	chr7	100278105	-	GIGYF1	chr7	100277541	+
intron-3UTR	ENST00000471340	ENST00000275732		ChiTaRS3.1			BC018563	GIGYF1	chr7	100278105	-	GIGYF1	chr7	100277541	+
intron-intron	ENST00000471340	ENST00000471340		ChiTaRS3.1			BC018563	GIGYF1	chr7	100278105	-	GIGYF1	chr7	100277541	+
intron-3CDS	ENST00000262960	ENST00000262960		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000262960	ENST00000598800		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000262960	ENST00000597849		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000262960	ENST00000594671		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000262960	ENST00000601173		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000598800	ENST00000262960		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000598800	ENST00000598800		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000598800	ENST00000597849		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000598800	ENST00000594671		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000598800	ENST00000601173		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000597849	ENST00000262960		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000597849	ENST00000598800		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000597849	ENST00000597849		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000597849	ENST00000594671		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000597849	ENST00000601173		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000594671	ENST00000262960		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000594671	ENST00000598800		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000594671	ENST00000597849		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000594671	ENST00000594671		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000594671	ENST00000601173		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000601173	ENST00000262960		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000601173	ENST00000598800		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000601173	ENST00000597849		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-3CDS	ENST00000601173	ENST00000594671		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000601173	ENST00000601173		ChiTaRS3.1			BE938073	DPP9	chr19	4694800	+	DPP9	chr19	4695526	-
intron-intron	ENST00000561500	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000561500	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000561500	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000561500	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000561500	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379047	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379047	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379047	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379047	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379047	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000320623	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000320623	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000320623	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000320623	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000320623	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379046	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379046	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379046	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379046	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000379046	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000439109	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000439109	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000439109	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000439109	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000439109	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000564043	ENST00000264951		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000564043	ENST00000392981		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000564043	ENST00000463916		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000564043	ENST00000544157		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000564043	ENST00000465074		ChiTaRS3.1			DB537013	NQO1	chr16	69744221	-	XRN1	chr3	142053736	-
intron-intron	ENST00000184183	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000184183	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000184183	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000184183	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000184183	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000184183	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000405845	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000459660	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000479867	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000495093	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000538966		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000361971		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000538543		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000538776		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000538282		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000484329	ENST00000485980		ChiTaRS3.1			AW006913	ROPN1	chr3	123704491	-	PLXNB3	chrX	153302668	-
intron-intron	ENST00000316737	ENST00000530124		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000316737	ENST00000257247		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000316737	ENST00000525875		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000316737	ENST00000378024		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000592955	ENST00000530124		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000592955	ENST00000257247		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000592955	ENST00000525875		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000592955	ENST00000378024		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000590327	ENST00000530124		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000590327	ENST00000257247		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000590327	ENST00000525875		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-intron	ENST00000590327	ENST00000378024		ChiTaRS3.1			BE008423	TSPAN16	chr19	11433148	-	AHNAK	chr11	62286790	+
intron-3CDS	ENST00000322128	ENST00000322128		ChiTaRS3.1			BF934813	TSPYL5	chr8	98289484	-	TSPYL5	chr8	98288836	+
intron-intron	ENST00000520602	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000520602	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370576	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000536274	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370578	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000414978	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000519895	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000370573	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000338585	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000341911		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000316528		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000442647		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000367814		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000525369		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000534121		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000533624		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000534044		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000528774		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000531845		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000527615		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000483690	ENST00000420123		ChiTaRS3.1			AI708084	MCF2	chrX	138688371	-	MYB	chr6	135540310	-
intron-intron	ENST00000535729	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000535729	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000535729	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000535729	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000535729	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000535729	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000535729	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000535729	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000431221	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000431221	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000431221	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000431221	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000431221	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000431221	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000431221	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000431221	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000547005	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000547005	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000547005	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000547005	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000547005	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000547005	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000547005	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000547005	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000311893	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000311893	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000311893	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000311893	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000311893	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000311893	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000311893	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000311893	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000338291	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000338291	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000338291	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000338291	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000338291	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000338291	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000338291	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000338291	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000392807	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000392807	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000392807	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000392807	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000392807	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-3UTR	ENST00000392807	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000392807	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
3UTR-intron	ENST00000392807	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000539593	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000539593	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000539593	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000539593	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000539593	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000539593	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000539593	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000539593	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000540154	ENST00000535729		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000540154	ENST00000431221		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000540154	ENST00000547005		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000540154	ENST00000311893		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000540154	ENST00000338291		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-3UTR	ENST00000540154	ENST00000392807		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000540154	ENST00000539593		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000540154	ENST00000540154		ChiTaRS3.1			CA311753	ISCU	chr12	108963025	-	ISCU	chr12	108962889	+
intron-intron	ENST00000354293	ENST00000317204		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000527886		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000525159		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000263646		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000542915		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000527938		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000354293	ENST00000528719		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000317204		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000527886		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000525159		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000263646		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000542915		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000527938		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000600199	ENST00000528719		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000317204		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000527886		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000525159		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000263646		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000542915		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000527938		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000359032	ENST00000528719		ChiTaRS3.1			BI053763	AP2A1	chr19	50284246	-	TOLLIP	chr11	1310118	-
intron-intron	ENST00000402357	ENST00000434735		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000342494		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000535089		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000280774		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000536398		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000340074		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000540230		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000537063		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000402357	ENST00000535900		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000434735		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000342494		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000535089		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000280774		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000536398		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000340074		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000540230		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000537063		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000358295	ENST00000535900		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000434735		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000342494		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000535089		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000280774		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000536398		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000340074		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000540230		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000537063		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000473898	ENST00000535900		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000434735		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000342494		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000535089		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000280774		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000536398		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000340074		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000540230		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000537063		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000406880	ENST00000535900		ChiTaRS3.1			BE066493	FAM19A5	chr22	49090610	+	UBE3B	chr12	109955091	-
intron-intron	ENST00000339594	ENST00000450686		ChiTaRS3.1			AW854433	BAZ1B	chr7	72895283	+	LINC01004	chr7	104626157	-
intron-intron	ENST00000339594	ENST00000445184		ChiTaRS3.1			AW854433	BAZ1B	chr7	72895283	+	LINC01004	chr7	104626157	-
intron-intron	ENST00000404251	ENST00000450686		ChiTaRS3.1			AW854433	BAZ1B	chr7	72895283	+	LINC01004	chr7	104626157	-
intron-intron	ENST00000404251	ENST00000445184		ChiTaRS3.1			AW854433	BAZ1B	chr7	72895283	+	LINC01004	chr7	104626157	-
intron-intron	ENST00000401605	ENST00000354464		ChiTaRS3.1			BE179163	CLIP4	chr2	29381336	-	IPO4	chr14	24658812	-
intron-intron	ENST00000401617	ENST00000354464		ChiTaRS3.1			BE179163	CLIP4	chr2	29381336	-	IPO4	chr14	24658812	-
intron-intron	ENST00000404424	ENST00000354464		ChiTaRS3.1			BE179163	CLIP4	chr2	29381336	-	IPO4	chr14	24658812	-
intron-intron	ENST00000320081	ENST00000354464		ChiTaRS3.1			BE179163	CLIP4	chr2	29381336	-	IPO4	chr14	24658812	-
intron-intron	ENST00000481628	ENST00000354464		ChiTaRS3.1			BE179163	CLIP4	chr2	29381336	-	IPO4	chr14	24658812	-
intron-intron	ENST00000536668	ENST00000425241		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000536668	ENST00000323373		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000536668	ENST00000393102		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000536668	ENST00000406272		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000536668	ENST00000478572		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000544994	ENST00000425241		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000544994	ENST00000323373		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000544994	ENST00000393102		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000544994	ENST00000406272		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000544994	ENST00000478572		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000228811	ENST00000425241		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000228811	ENST00000323373		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000228811	ENST00000393102		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000228811	ENST00000406272		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000228811	ENST00000478572		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000540107	ENST00000425241		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000540107	ENST00000323373		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000540107	ENST00000393102		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000540107	ENST00000406272		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000540107	ENST00000478572		ChiTaRS3.1			DB194933	PRR4	chr12	10999932	-	NR2C2	chr3	15086183	-
intron-intron	ENST00000584396	ENST00000584396		ChiTaRS3.1			CA944833	VEZF1	chr17	56049104	+	VEZF1	chr17	56049324	-
intron-intron	ENST00000584396	ENST00000581208		ChiTaRS3.1			CA944833	VEZF1	chr17	56049104	+	VEZF1	chr17	56049324	-
intron-intron	ENST00000581208	ENST00000584396		ChiTaRS3.1			CA944833	VEZF1	chr17	56049104	+	VEZF1	chr17	56049324	-
intron-intron	ENST00000581208	ENST00000581208		ChiTaRS3.1			CA944833	VEZF1	chr17	56049104	+	VEZF1	chr17	56049324	-
intron-3UTR	ENST00000536782	ENST00000370112		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
intron-intron	ENST00000536782	ENST00000357650		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
3UTR-3UTR	ENST00000492361	ENST00000370112		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
3UTR-intron	ENST00000492361	ENST00000357650		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
3UTR-3UTR	ENST00000376259	ENST00000370112		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
3UTR-intron	ENST00000376259	ENST00000357650		ChiTaRS3.1			BQ003023	TNFRSF1B	chr1	12268962	-	SLC30A7	chr1	101443342	-
Frame-shit	ENST00000338222	ENST00000338222		ChiTaRS3.1			BF081503	UBQLN2	chrX	56591421	-	UBQLN2	chrX	56591344	+
intron-3CDS	ENST00000565698	ENST00000341724		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000565698	ENST00000372004		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000565698	ENST00000371998		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000565698	ENST00000371997		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-intron	ENST00000565698	ENST00000497292		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000304658	ENST00000341724		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000304658	ENST00000372004		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000304658	ENST00000371998		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000304658	ENST00000371997		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-intron	ENST00000304658	ENST00000497292		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000561488	ENST00000341724		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000561488	ENST00000372004		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000561488	ENST00000371998		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3CDS	ENST00000561488	ENST00000371997		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-intron	ENST00000561488	ENST00000497292		ChiTaRS3.1			BE832543	XPO6	chr16	28157506	-	NCOA3	chr20	46265422	+
intron-3UTR	ENST00000474528	ENST00000423278		ChiTaRS3.1			AK098753	SFXN5	chr2	73285955	-	MIAT	chr22	27065126	+
intron-3UTR	ENST00000272433	ENST00000423278		ChiTaRS3.1			AK098753	SFXN5	chr2	73285955	-	MIAT	chr22	27065126	+
intron-3UTR	ENST00000410065	ENST00000423278		ChiTaRS3.1			AK098753	SFXN5	chr2	73285955	-	MIAT	chr22	27065126	+
3UTR-intron	ENST00000270792	ENST00000468521		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000270792	ENST00000403528		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000270792	ENST00000373706		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000270792	ENST00000373705		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000319041	ENST00000468521		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000319041	ENST00000403528		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000319041	ENST00000373706		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-intron	ENST00000319041	ENST00000373705		ChiTaRS3.1			AW793853	SH3BGRL3	chr1	26607782	-	HCRTR1	chr1	32096003	-
3UTR-3CDS	ENST00000372523	ENST00000372523		ChiTaRS3.1			AW025863	ZSWIM1	chr20	44513720	+	ZSWIM1	chr20	44512017	-
3UTR-3CDS	ENST00000372523	ENST00000372520		ChiTaRS3.1			AW025863	ZSWIM1	chr20	44513720	+	ZSWIM1	chr20	44512017	-
3UTR-3CDS	ENST00000372520	ENST00000372523		ChiTaRS3.1			AW025863	ZSWIM1	chr20	44513720	+	ZSWIM1	chr20	44512017	-
3UTR-3CDS	ENST00000372520	ENST00000372520		ChiTaRS3.1			AW025863	ZSWIM1	chr20	44513720	+	ZSWIM1	chr20	44512017	-
intron-intron	ENST00000230859	ENST00000230859		ChiTaRS3.1			DW407603	PAPD7	chr5	6718680	-	PAPD7	chr5	6725700	-
intron-intron	ENST00000368947	ENST00000379565		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000368947	ENST00000544447		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000368947	ENST00000379548		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000368947	ENST00000540702		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000368947	ENST00000479809		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000474997	ENST00000379565		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000474997	ENST00000544447		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000474997	ENST00000379548		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000474997	ENST00000540702		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-intron	ENST00000474997	ENST00000479809		ChiTaRS3.1			AW006813	ANXA9	chr1	150965882	+	RPS6KA3	chrX	20226770	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766343	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766343	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
3UTR-3CDS	ENST00000324306	ENST00000401783		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
3UTR-3CDS	ENST00000324306	ENST00000374469		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
3UTR-5UTR	ENST00000324306	ENST00000467821		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
3UTR-5UTR	ENST00000324306	ENST00000302728		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
3UTR-intron	ENST00000324306	ENST00000374461		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
3UTR-intron	ENST00000324306	ENST00000297826		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-3CDS	ENST00000426572	ENST00000401783		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-3CDS	ENST00000426572	ENST00000374469		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-5UTR	ENST00000426572	ENST00000467821		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-5UTR	ENST00000426572	ENST00000302728		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-intron	ENST00000426572	ENST00000374461		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-intron	ENST00000426572	ENST00000297826		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-3CDS	ENST00000535170	ENST00000401783		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-3CDS	ENST00000535170	ENST00000374469		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-5UTR	ENST00000535170	ENST00000467821		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-5UTR	ENST00000535170	ENST00000302728		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-intron	ENST00000535170	ENST00000374461		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
intron-intron	ENST00000535170	ENST00000297826		ChiTaRS3.1			BF996713	ZKSCAN1	chr7	99634403	-	SVEP1	chr9	113228236	+
In-frame	ENST00000316448	ENST00000316448		ChiTaRS3.1			N39173	CALR	chr19	13050417	-	CALR	chr19	13050369	+
5CDS-intron	ENST00000396373	ENST00000261716		ChiTaRS3.1			JN603181	ETV6	chr12	11905514	+	TAOK1	chr17	27862544	-
5CDS-intron	ENST00000396373	ENST00000536202		ChiTaRS3.1			JN603181	ETV6	chr12	11905514	+	TAOK1	chr17	27862544	-
3UTR-intron	ENST00000544715	ENST00000261716		ChiTaRS3.1			JN603181	ETV6	chr12	11905514	+	TAOK1	chr17	27862544	-
3UTR-intron	ENST00000544715	ENST00000536202		ChiTaRS3.1			JN603181	ETV6	chr12	11905514	+	TAOK1	chr17	27862544	-
Frame-shit	ENST00000471660	ENST00000471660		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
In-frame	ENST00000471660	ENST00000263780		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
Frame-shit	ENST00000471660	ENST00000494980		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
5CDS-intron	ENST00000471660	ENST00000472024		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
In-frame	ENST00000263780	ENST00000471660		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
Frame-shit	ENST00000263780	ENST00000263780		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
In-frame	ENST00000263780	ENST00000494980		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
5CDS-intron	ENST00000263780	ENST00000472024		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
Frame-shit	ENST00000494980	ENST00000471660		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
In-frame	ENST00000494980	ENST00000263780		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
Frame-shit	ENST00000494980	ENST00000494980		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
5CDS-intron	ENST00000494980	ENST00000472024		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
intron-3CDS	ENST00000472024	ENST00000471660		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
intron-3CDS	ENST00000472024	ENST00000263780		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
intron-3CDS	ENST00000472024	ENST00000494980		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
intron-intron	ENST00000472024	ENST00000472024		ChiTaRS3.1			BU608643	CHMP2B	chr3	87302955	-	CHMP2B	chr3	87302866	+
intron-intron	ENST00000459775	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000459775	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000459775	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000459775	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000450066	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000450066	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000450066	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000450066	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409025	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409025	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409025	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409025	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409470	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409470	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409470	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409470	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000323701	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000323701	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000323701	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000323701	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409766	ENST00000265239		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409766	ENST00000455191		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409766	ENST00000453254		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000409766	ENST00000480302		ChiTaRS3.1			CB857203	USP39	chr2	85868097	-	IQCG	chr3	197677059	+
intron-intron	ENST00000366684	ENST00000390168		ChiTaRS3.1			DA897253	ACTA1	chr1	229568496	-	H19	chr11	2017529	-
intron-intron	ENST00000366683	ENST00000390168		ChiTaRS3.1			DA897253	ACTA1	chr1	229568496	-	H19	chr11	2017529	-
Frame-shit	ENST00000370951	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370951	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370951	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-intron	ENST00000370951	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370951	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370951	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370951	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000405432	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000405432	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000405432	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-intron	ENST00000405432	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000405432	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000405432	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000405432	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370950	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370950	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370950	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-intron	ENST00000370950	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370950	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370950	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370950	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3CDS	ENST00000454435	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3CDS	ENST00000454435	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3CDS	ENST00000454435	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-intron	ENST00000454435	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3UTR	ENST00000454435	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3UTR	ENST00000454435	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3UTR	ENST00000454435	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000436161	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000436161	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000436161	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-intron	ENST00000436161	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000436161	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000436161	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000436161	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000484162	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000484162	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3CDS	ENST00000484162	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-intron	ENST00000484162	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000484162	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000484162	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
3UTR-3UTR	ENST00000484162	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370949	ENST00000370951		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370949	ENST00000405432		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
Frame-shit	ENST00000370949	ENST00000370950		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-intron	ENST00000370949	ENST00000454435		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370949	ENST00000436161		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370949	ENST00000484162		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
5CDS-3UTR	ENST00000370949	ENST00000370949		ChiTaRS3.1			BU608483	SRSF11	chr1	70703189	-	SRSF11	chr1	70700410	+
intron-3UTR	ENST00000372189	ENST00000371065		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-intron	ENST00000372189	ENST00000484243		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-3UTR	ENST00000372195	ENST00000371065		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-intron	ENST00000372195	ENST00000484243		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-3UTR	ENST00000372190	ENST00000371065		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-intron	ENST00000372190	ENST00000484243		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-3UTR	ENST00000481260	ENST00000371065		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-intron	ENST00000481260	ENST00000484243		ChiTaRS3.1			BF995773	RAPGEF1	chr9	134466936	+	LEPROT	chr1	65900218	-
intron-3UTR	ENST00000262525	ENST00000265062		ChiTaRS3.1			BE857563	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-3UTR	ENST00000262525	ENST00000482525		ChiTaRS3.1			BE857563	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-3UTR	ENST00000262525	ENST00000485280		ChiTaRS3.1			BE857563	ZNF629	chr16	30789857	+	RAB7A	chr3	128532429	+
intron-intron	ENST00000261893	ENST00000263956		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-intron	ENST00000261893	ENST00000409364		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-intron	ENST00000261893	ENST00000470386		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-intron	ENST00000413507	ENST00000263956		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-intron	ENST00000413507	ENST00000409364		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-intron	ENST00000413507	ENST00000470386		ChiTaRS3.1			AW301723	LACTB	chr15	63423456	-	GTF3C3	chr2	197630765	+
intron-3CDS	ENST00000255175	ENST00000255175		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000255175	ENST00000342374		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000255175	ENST00000541235		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-intron	ENST00000255175	ENST00000468234		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000342374	ENST00000255175		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000342374	ENST00000342374		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000342374	ENST00000541235		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-intron	ENST00000342374	ENST00000468234		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000541235	ENST00000255175		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000541235	ENST00000342374		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000541235	ENST00000541235		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-intron	ENST00000541235	ENST00000468234		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000468234	ENST00000255175		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000468234	ENST00000342374		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-3CDS	ENST00000468234	ENST00000541235		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-intron	ENST00000468234	ENST00000468234		ChiTaRS3.1			CA842753	SERINC3	chr20	43129046	+	SERINC3	chr20	43133514	-
intron-intron	ENST00000449111	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000449111	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000449111	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000444489	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000444489	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000458274	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000458274	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000450989	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000450989	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000452864	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000452864	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000432696	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000432696	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-3UTR	ENST00000425602	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
3UTR-intron	ENST00000425602	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000455777	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000455777	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000449111		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000444489		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000458274		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000450989		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000452864		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000432696		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000425602		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-3UTR	ENST00000413076	ENST00000455777		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000413076	ENST00000413076		ChiTaRS3.1			BE694373	LINC00894	chrX	149116267	-	LINC00894	chrX	149130935	-
intron-intron	ENST00000321990	ENST00000302326		ChiTaRS3.1			AI024583	ATAD5	chr17	29160560	+	MN1	chr22	28156876	+
intron-intron	ENST00000321990	ENST00000497225		ChiTaRS3.1			AI024583	ATAD5	chr17	29160560	+	MN1	chr22	28156876	+
3UTR-3UTR	ENST00000253861	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000253861	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000253861	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-3UTR	ENST00000253861	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000253861	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000253861	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000539845	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000539845	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000539845	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000539845	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000539845	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000539845	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000393161	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000393161	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000393161	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000393161	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000393161	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000393161	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-3UTR	ENST00000545148	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000545148	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000545148	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-3UTR	ENST00000545148	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000545148	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
3UTR-intron	ENST00000545148	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000460346	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000460346	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000460346	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000460346	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000460346	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000460346	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000541309	ENST00000253861		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000541309	ENST00000539845		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000541309	ENST00000393161		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-3UTR	ENST00000541309	ENST00000545148		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000541309	ENST00000460346		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000541309	ENST00000541309		ChiTaRS3.1			AA578413	EXOC4	chr7	133750389	+	EXOC4	chr7	133750233	-
intron-intron	ENST00000378892	ENST00000221249		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000378892	ENST00000545201		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000378892	ENST00000414982		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000378892	ENST00000450331		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000378892	ENST00000600737		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000378892	ENST00000594864		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000221249		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000545201		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000414982		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000450331		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000600737		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000277010	ENST00000594864		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000221249		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000545201		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000414982		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000450331		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000600737		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000477726	ENST00000594864		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000221249		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000545201		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000414982		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000450331		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000600737		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000461426	ENST00000594864		ChiTaRS3.1			CB269943	SIGMAR1	chr9	34634820	+	PNPLA6	chr19	7622231	-
intron-intron	ENST00000282470	ENST00000482436		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000282470	ENST00000429591		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000418378	ENST00000482436		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000418378	ENST00000429591		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000503414	ENST00000482436		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000503414	ENST00000429591		ChiTaRS3.1			BE843913	SPARCL1	chr4	88401651	+	ZNF713	chr7	55991778	+
intron-intron	ENST00000376030	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000376030	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000503743	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000503743	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000422387	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000422387	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000361144	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000361144	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000400798	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000400798	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000400797	ENST00000378609		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
intron-intron	ENST00000400797	ENST00000472614		ChiTaRS3.1			BF510743	KAZN	chr1	15333549	-	GNB1	chr1	1819821	-
5UTR-3CDS	ENST00000244769	ENST00000225235		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
5UTR-3UTR	ENST00000244769	ENST00000485048		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
5UTR-3CDS	ENST00000436367	ENST00000225235		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
5UTR-3UTR	ENST00000436367	ENST00000485048		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
intron-3CDS	ENST00000467008	ENST00000225235		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
intron-3UTR	ENST00000467008	ENST00000485048		ChiTaRS3.1			DA370353	ATXN1	chr6	16658006	-	TBC1D12	chr10	96290953	+
intron-3UTR	ENST00000262809	ENST00000522012		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000262809	ENST00000518454		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000262809	ENST00000265806		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000262809	ENST00000411463		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000596124	ENST00000522012		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000596124	ENST00000518454		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000596124	ENST00000265806		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3UTR	ENST00000596124	ENST00000411463		ChiTaRS3.1			BF875643	ELL	chr19	18603527	+	R3HCC1	chr8	23147919	+
intron-3CDS	ENST00000394480	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000394480	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000557856	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000557856	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000357724	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000357724	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000355254	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000355254	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000360948	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000360948	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000542733	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000542733	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558676	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558676	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000317501	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000317501	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000558306	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000558306	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000540489	ENST00000335754		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000488802		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000482349		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-5UTR	ENST00000540489	ENST00000231909		ChiTaRS3.1			AI635533	NTRK3	chr15	88420081	+	ACTR8	chr3	53904138	+
intron-3CDS	ENST00000304312	ENST00000552285		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000315970		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000439210		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000389146		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000413095		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000551035		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000435406		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000257966		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000304312	ENST00000389142		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000552285		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000315970		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000439210		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000389146		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000413095		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000551035		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000435406		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000257966		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
intron-3CDS	ENST00000506525	ENST00000389142		ChiTaRS3.1			AW001413	ATP5I	chr4	667171	+	OS9	chr12	58112054	-
3UTR-3UTR	ENST00000338222	ENST00000338222		ChiTaRS3.1			BM969353	UBQLN2	chrX	56593233	-	UBQLN2	chrX	56593124	+
3UTR-3UTR	ENST00000433866	ENST00000433866		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
3UTR-intron	ENST00000433866	ENST00000570259		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
3UTR-intron	ENST00000433866	ENST00000567125		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-3UTR	ENST00000570259	ENST00000433866		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-intron	ENST00000570259	ENST00000570259		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-intron	ENST00000570259	ENST00000567125		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-3UTR	ENST00000567125	ENST00000433866		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-intron	ENST00000567125	ENST00000570259		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-intron	ENST00000567125	ENST00000567125		ChiTaRS3.1			AA747373	HSBP1	chr16	83846276	+	HSBP1	chr16	83846187	-
intron-3CDS	ENST00000299138	ENST00000299138		ChiTaRS3.1			BQ291823	VPS35	chr16	46696312	+	VPS35	chr16	46696252	-
intron-intron	ENST00000299138	ENST00000568642		ChiTaRS3.1			BQ291823	VPS35	chr16	46696312	+	VPS35	chr16	46696252	-
intron-3CDS	ENST00000568642	ENST00000299138		ChiTaRS3.1			BQ291823	VPS35	chr16	46696312	+	VPS35	chr16	46696252	-
intron-intron	ENST00000568642	ENST00000568642		ChiTaRS3.1			BQ291823	VPS35	chr16	46696312	+	VPS35	chr16	46696252	-
3UTR-3CDS	ENST00000333213	ENST00000378618		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-5UTR	ENST00000333213	ENST00000536126		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-5UTR	ENST00000333213	ENST00000278460		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-intron	ENST00000333213	ENST00000395460		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-intron	ENST00000333213	ENST00000378615		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-intron	ENST00000333213	ENST00000543718		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
3UTR-intron	ENST00000333213	ENST00000527268		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-3CDS	ENST00000580013	ENST00000378618		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-5UTR	ENST00000580013	ENST00000536126		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-5UTR	ENST00000580013	ENST00000278460		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-intron	ENST00000580013	ENST00000395460		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-intron	ENST00000580013	ENST00000378615		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-intron	ENST00000580013	ENST00000543718		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-intron	ENST00000580013	ENST00000527268		ChiTaRS3.1			BE856783	TSEN54	chr17	73520576	-	C11orf49	chr11	46958302	+
intron-intron	ENST00000263035	ENST00000347300		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000296266		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000507564		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000431818		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000504021		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000349441		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000348417		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000440957		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000263035	ENST00000513932		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000347300		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000296266		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000507564		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000431818		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000504021		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000349441		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000348417		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000440957		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000465617	ENST00000513932		ChiTaRS3.1			BE072743	DHTKD1	chr10	12120016	+	IFT122	chr3	129192913	+
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835133	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
3UTR-intron	ENST00000263346	ENST00000290705		ChiTaRS3.1			CB115063	TCF25	chr16	89977732	-	MT1A	chr16	56659695	+
intron-intron	ENST00000563406	ENST00000290705		ChiTaRS3.1			CB115063	TCF25	chr16	89977732	-	MT1A	chr16	56659695	+
3UTR-intron	ENST00000263347	ENST00000290705		ChiTaRS3.1			CB115063	TCF25	chr16	89977732	-	MT1A	chr16	56659695	+
intron-intron	ENST00000446856	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000446856	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000264758	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000264758	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398125	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398125	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000513328	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000513328	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000503455	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000503455	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000355842	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000355842	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398123	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398123	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398129	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000398129	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000538860	ENST00000341998		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-intron	ENST00000538860	ENST00000286344		ChiTaRS3.1			BI034953	ADD1	chr4	2895683	-	SLC24A2	chr9	19725743	+
intron-3CDS	ENST00000558939	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000558939	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000442299	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000442299	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000317509	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000317509	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000560589	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000560589	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559929	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559929	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559048	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559048	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000560939	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000560939	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000557997	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000557997	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000539550	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000539550	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000558201	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000558201	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000440567	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000440567	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559191	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559191	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000558379	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000558379	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000557907	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000557907	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000451782	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000451782	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559574	ENST00000306247		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
intron-3CDS	ENST00000559574	ENST00000308807		ChiTaRS3.1			BF895963	TLE3	chr15	70344732	+	MLKL	chr16	74729448	-
5CDS-intron	ENST00000306735	ENST00000306735		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000586847		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
5CDS-intron	ENST00000306735	ENST00000262197		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000306735		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000586847		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
intron-intron	ENST00000586847	ENST00000262197		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000306735		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000586847		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000262197	ENST00000262197		ChiTaRS3.1			BE551363	RBFA	chr18	77806102	-	RBFA	chr18	77805756	+
3UTR-intron	ENST00000540947	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000540947	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000540947	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000540947	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000540947	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000338718	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000338718	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000338718	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000338718	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000338718	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000541479	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000541479	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000541479	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000541479	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000541479	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000398354	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000398354	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000398354	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000398354	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000398354	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000326686	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000326686	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000326686	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000326686	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000326686	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000540579	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000540579	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000540579	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000540579	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000540579	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000535696	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000535696	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000535696	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000535696	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
intron-intron	ENST00000535696	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000397205	ENST00000392038		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000397205	ENST00000424901		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000397205	ENST00000311278		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000397205	ENST00000579047		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000397205	ENST00000581582		ChiTaRS3.1			BF950673	CES4A	chr16	67043557	+	AKT2	chr19	40773373	+
3UTR-intron	ENST00000393409	ENST00000425202		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
3UTR-intron	ENST00000393409	ENST00000490451		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
3UTR-intron	ENST00000251772	ENST00000425202		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
3UTR-intron	ENST00000251772	ENST00000490451		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
intron-intron	ENST00000505278	ENST00000425202		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
intron-intron	ENST00000505278	ENST00000490451		ChiTaRS3.1			AL162013	PLXNA1	chr3	126753574	+	C19orf81	chr19	51163017	-
5CDS-3UTR	ENST00000511685	ENST00000306796		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
5CDS-3UTR	ENST00000511685	ENST00000354321		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
5CDS-3UTR	ENST00000406950	ENST00000306796		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
5CDS-3UTR	ENST00000406950	ENST00000354321		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
3UTR-3UTR	ENST00000502950	ENST00000306796		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
3UTR-3UTR	ENST00000502950	ENST00000354321		ChiTaRS3.1			BM804083	TENM3	chr4	183675658	+	DUS1L	chr17	80015818	-
3UTR-intron	ENST00000252577	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000252577	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000360315	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000537887	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000404158	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-intron	ENST00000358713	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000429563	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000376048		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000311066		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000235372		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000502727		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000413440		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000343137		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000503842		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
intron-intron	ENST00000473184	ENST00000505823		ChiTaRS3.1			AK000843	GATAD2A	chr19	19617422	+	PRDM2	chr1	14100959	+
3UTR-3UTR	ENST00000337827	ENST00000337827		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
3UTR-intron	ENST00000337827	ENST00000448469		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
3UTR-intron	ENST00000337827	ENST00000553669		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
3UTR-intron	ENST00000337827	ENST00000554858		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-3UTR	ENST00000448469	ENST00000337827		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000448469	ENST00000448469		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000448469	ENST00000553669		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000448469	ENST00000554858		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-3UTR	ENST00000553669	ENST00000337827		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000553669	ENST00000448469		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000553669	ENST00000553669		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000553669	ENST00000554858		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-3UTR	ENST00000554858	ENST00000337827		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000554858	ENST00000448469		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000554858	ENST00000553669		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-intron	ENST00000554858	ENST00000554858		ChiTaRS3.1			H43173	GALNT16	chr14	69820972	+	GALNT16	chr14	69820611	+
intron-3CDS	ENST00000349466	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000349466	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000349466	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-intron	ENST00000349466	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370186	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370186	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370186	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
5CDS-intron	ENST00000370186	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
In-frame	ENST00000393842	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
In-frame	ENST00000393842	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
In-frame	ENST00000393842	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
5CDS-intron	ENST00000393842	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000359149	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000359149	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000359149	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
5CDS-intron	ENST00000359149	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000263519	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000263519	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000263519	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-intron	ENST00000263519	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370181	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370181	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
Frame-shit	ENST00000370181	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
5CDS-intron	ENST00000370181	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000460549	ENST00000373635		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000460549	ENST00000308696		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-3CDS	ENST00000460549	ENST00000409643		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
intron-intron	ENST00000460549	ENST00000488354		ChiTaRS3.1			BU730843	ATP2B3	chrX	152835166	-	PSMD1	chr2	232030589	+
5CDS-5UTR	ENST00000457580	ENST00000284727		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000457580	ENST00000409194		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-intron	ENST00000457580	ENST00000392541		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000388793	ENST00000284727		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000388793	ENST00000409194		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-intron	ENST00000388793	ENST00000392541		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000432932	ENST00000284727		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000432932	ENST00000409194		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-intron	ENST00000432932	ENST00000392541		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000347433	ENST00000284727		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-5UTR	ENST00000347433	ENST00000409194		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
5CDS-intron	ENST00000347433	ENST00000392541		ChiTaRS3.1			BE743393	SRRT	chr7	100484996	-	ATP5G3	chr2	176046422	-
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			BF355823	CDR1	chrX	139866825	+	CDR1	chrX	139865335	+
intron-intron	ENST00000464451	ENST00000464451		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
intron-3UTR	ENST00000464451	ENST00000243253		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
intron-3UTR	ENST00000464451	ENST00000424880		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
intron-3UTR	ENST00000464451	ENST00000483956		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-intron	ENST00000243253	ENST00000464451		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000243253	ENST00000243253		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000243253	ENST00000424880		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000243253	ENST00000483956		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-intron	ENST00000424880	ENST00000464451		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000424880	ENST00000243253		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000424880	ENST00000424880		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000424880	ENST00000483956		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-intron	ENST00000483956	ENST00000464451		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000483956	ENST00000243253		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000483956	ENST00000424880		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
3UTR-3UTR	ENST00000483956	ENST00000483956		ChiTaRS3.1			BF748943	SEC61A1	chr3	127789430	-	SEC61A1	chr3	127788923	+
intron-3UTR	ENST00000511206	ENST00000374810		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
intron-3UTR	ENST00000511206	ENST00000374809		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
3UTR-3UTR	ENST00000287936	ENST00000374810		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
3UTR-3UTR	ENST00000287936	ENST00000374809		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
3UTR-3UTR	ENST00000343975	ENST00000374810		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
3UTR-3UTR	ENST00000343975	ENST00000374809		ChiTaRS3.1			BF853983	HMGCR	chr5	74657009	-	TP53INP2	chr20	33300042	+
intron-intron	ENST00000392951	ENST00000392951		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-3UTR	ENST00000392951	ENST00000530649		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-3UTR	ENST00000392951	ENST00000532870		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-intron	ENST00000530649	ENST00000392951		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000530649	ENST00000530649		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000530649	ENST00000532870		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-intron	ENST00000532870	ENST00000392951		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000532870	ENST00000530649		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000532870	ENST00000532870		ChiTaRS3.1			AJ707033	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-intron	ENST00000460734	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000460734	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000460734	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000460734	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000460734	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000460734	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000539173	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000437626	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000389863	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000348831	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000460734		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000539173		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000437626		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000389863		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000348831		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000360697	ENST00000360697		ChiTaRS3.1			BI053543	ADARB1	chr21	46622953	+	ADARB1	chr21	46619993	+
intron-intron	ENST00000436648	ENST00000448907		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000371827		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000357083		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000371824		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000371823		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000371821		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000371819		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000436648	ENST00000492299		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000448907		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000371827		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000357083		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000371824		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000371823		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000371821		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000371819		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000321919	ENST00000492299		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000448907		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000371827		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000357083		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000371824		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000371823		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000371821		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000371819		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000381983	ENST00000492299		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000448907		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000371827		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000357083		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000371824		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000371823		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000371821		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000371819		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000591451	ENST00000492299		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000448907		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000371827		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000357083		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000371824		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000371823		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000371821		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000371819		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-intron	ENST00000586901	ENST00000492299		ChiTaRS3.1			BC003693	GLYR1	chr16	4854935	-	ELAVL4	chr1	50539308	+
intron-3UTR	ENST00000294016	ENST00000443503		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
intron-3UTR	ENST00000294016	ENST00000273179		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
intron-intron	ENST00000294016	ENST00000310189		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
intron-3UTR	ENST00000571889	ENST00000443503		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
intron-3UTR	ENST00000571889	ENST00000273179		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
intron-intron	ENST00000571889	ENST00000310189		ChiTaRS3.1			BF854283	ADCY9	chr16	4159539	+	CTDSPL	chr3	38025616	-
3UTR-3UTR	ENST00000484427	ENST00000484427		ChiTaRS3.1			BE254393	DDX27	chr20	47858499	+	DDX27	chr20	47846757	+
3UTR-3UTR	ENST00000484427	ENST00000371764		ChiTaRS3.1			BE254393	DDX27	chr20	47858499	+	DDX27	chr20	47846757	+
5CDS-3UTR	ENST00000371764	ENST00000484427		ChiTaRS3.1			BE254393	DDX27	chr20	47858499	+	DDX27	chr20	47846757	+
5CDS-3UTR	ENST00000371764	ENST00000371764		ChiTaRS3.1			BE254393	DDX27	chr20	47858499	+	DDX27	chr20	47846757	+
intron-5UTR	ENST00000215882	ENST00000371222		ChiTaRS3.1			CD614313	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000451283	ENST00000371222		ChiTaRS3.1			CD614313	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-5UTR	ENST00000461267	ENST00000371222		ChiTaRS3.1			CD614313	SLC25A1	chr22	19164999	-	JUN	chr1	59249716	-
intron-intron	ENST00000520356	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520356	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520356	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520356	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520356	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520356	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520727	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000429442	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000377838	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000520214	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000523399	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000450629		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000338595		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000401888		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000477078		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000369707		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-intron	ENST00000517307	ENST00000429569		ChiTaRS3.1			BQ369613	ZFAT	chr8	135627551	+	GSTO2	chr10	106046903	-
intron-3CDS	ENST00000427980	ENST00000403662		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000427980	ENST00000262825		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000427980	ENST00000406230		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-intron	ENST00000427980	ENST00000536485		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000569119	ENST00000403662		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000569119	ENST00000262825		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000569119	ENST00000406230		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-intron	ENST00000569119	ENST00000536485		ChiTaRS3.1			BF884753	ATXN1L	chr16	71898951	+	CSF2RB	chr22	37319388	-
intron-3CDS	ENST00000390394	ENST00000422514		ChiTaRS3.1			BC007583	TRBV20-1	chr16	2014652	+	RPL23A	chr17	27047723	+
intron-5UTR	ENST00000390394	ENST00000496182		ChiTaRS3.1			BC007583	TRBV20-1	chr16	2014652	+	RPL23A	chr17	27047723	+
intron-5UTR	ENST00000390394	ENST00000394938		ChiTaRS3.1			BC007583	TRBV20-1	chr16	2014652	+	RPL23A	chr17	27047723	+
intron-5UTR	ENST00000390394	ENST00000472628		ChiTaRS3.1			BC007583	TRBV20-1	chr16	2014652	+	RPL23A	chr17	27047723	+
intron-3UTR	ENST00000272238	ENST00000367182		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-3UTR	ENST00000272238	ENST00000463049		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000272238	ENST00000507825		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000272238	ENST00000454264		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000272238	ENST00000367183		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000272238	ENST00000367180		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000272238	ENST00000391947		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-3UTR	ENST00000381661	ENST00000367182		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-3UTR	ENST00000381661	ENST00000463049		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000381661	ENST00000507825		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000381661	ENST00000454264		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000381661	ENST00000367183		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000381661	ENST00000367180		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-intron	ENST00000381661	ENST00000391947		ChiTaRS3.1			BI014313	ATP6V1C2	chr2	10912204	-	MDM4	chr1	204519019	+
intron-5UTR	ENST00000405837	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000405837	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000433053	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000433053	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000278893	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000278893	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000360796	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000360796	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000403550	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000403550	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000407022	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000407022	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000421906	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000421906	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000537604	ENST00000295830		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000537604	ENST00000463836		ChiTaRS3.1			BC049823	BSCL2	chr11	62472985	-	RPL22L1	chr3	170587980	-
intron-5UTR	ENST00000319340	ENST00000527132		ChiTaRS3.1			DA162383	CHST13	chr3	126245529	+	DKK3	chr11	12030018	-
intron-5UTR	ENST00000319340	ENST00000396505		ChiTaRS3.1			DA162383	CHST13	chr3	126245529	+	DKK3	chr11	12030018	-
intron-5UTR	ENST00000319340	ENST00000326932		ChiTaRS3.1			DA162383	CHST13	chr3	126245529	+	DKK3	chr11	12030018	-
intron-5UTR	ENST00000319340	ENST00000525493		ChiTaRS3.1			DA162383	CHST13	chr3	126245529	+	DKK3	chr11	12030018	-
intron-5UTR	ENST00000319340	ENST00000450094		ChiTaRS3.1			DA162383	CHST13	chr3	126245529	+	DKK3	chr11	12030018	-
intron-intron	ENST00000445907	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000445907	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000445907	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000445907	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000320658	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000320658	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000320658	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000320658	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000453373	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000453373	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000453373	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000453373	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000397608	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000397608	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000397608	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000397608	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000402486	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000402486	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000402486	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000402486	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000401861	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000401861	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000401861	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000401861	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000480591	ENST00000342228		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000480591	ENST00000520262		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000480591	ENST00000520179		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000480591	ENST00000523340		ChiTaRS3.1			CV414683	CHRM2	chr7	136572599	+	SLC20A2	chr8	42354179	+
intron-intron	ENST00000257209	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000257209	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000445677	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000590592	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000359247	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000591635	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000592128	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000257209		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000445677		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000590592		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000359247		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000591635		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000592128		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
intron-intron	ENST00000587493	ENST00000587493		ChiTaRS3.1			BI027853	FHOD3	chr18	34358800	-	FHOD3	chr18	34358928	+
3UTR-3CDS	ENST00000357103	ENST00000341567		ChiTaRS3.1			BE935353	ADIPOR2	chr12	1897741	-	TMEM248	chr7	66418311	+
intron-3CDS	ENST00000544470	ENST00000341567		ChiTaRS3.1			BE935353	ADIPOR2	chr12	1897741	-	TMEM248	chr7	66418311	+
intron-intron	ENST00000219837	ENST00000438132		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000542263		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000417362		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000251143		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000543152		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000448695		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000544275		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000219837	ENST00000538853		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000438132		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000542263		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000417362		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000251143		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000543152		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000448695		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000544275		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000568230	ENST00000538853		ChiTaRS3.1			BF223053	KNOP1	chr16	19725766	+	C16orf62	chr16	19710410	+
intron-intron	ENST00000460934	ENST00000252674		ChiTaRS3.1			S81007	SLC45A3	chr1	205616219	+	MLLT1	chr19	6277188	-
intron-intron	ENST00000460934	ENST00000585588		ChiTaRS3.1			S81007	SLC45A3	chr1	205616219	+	MLLT1	chr19	6277188	-
intron-intron	ENST00000367145	ENST00000252674		ChiTaRS3.1			S81007	SLC45A3	chr1	205616219	+	MLLT1	chr19	6277188	-
intron-intron	ENST00000367145	ENST00000585588		ChiTaRS3.1			S81007	SLC45A3	chr1	205616219	+	MLLT1	chr19	6277188	-
intron-intron	ENST00000452401	ENST00000452401		ChiTaRS3.1			BE938643	SPPL2B	chr19	2341781	-	SPPL2B	chr19	2341673	+
3UTR-3UTR	ENST00000272102	ENST00000452853		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000272102	ENST00000239940		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000423691		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000272102	ENST00000481767		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000272102	ENST00000494827		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000272102	ENST00000490975		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000497148		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000475518		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000481275		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000498307		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000489155		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000461930		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000272102	ENST00000461868		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000540651	ENST00000452853		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000540651	ENST00000239940		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000423691		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000540651	ENST00000481767		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000540651	ENST00000494827		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000540651	ENST00000490975		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000497148		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000475518		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000481275		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000498307		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000489155		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000461930		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000540651	ENST00000461868		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-3UTR	ENST00000478424	ENST00000452853		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-3UTR	ENST00000478424	ENST00000239940		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000423691		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-3UTR	ENST00000478424	ENST00000481767		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-3UTR	ENST00000478424	ENST00000494827		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-3UTR	ENST00000478424	ENST00000490975		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000497148		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000475518		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000481275		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000498307		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000489155		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000461930		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000478424	ENST00000461868		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000541182	ENST00000452853		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000541182	ENST00000239940		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000423691		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000541182	ENST00000481767		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000541182	ENST00000494827		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-3UTR	ENST00000541182	ENST00000490975		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000497148		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000475518		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000481275		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000498307		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000489155		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000461930		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
3UTR-intron	ENST00000541182	ENST00000461868		ChiTaRS3.1			M62013	ARF1	chr1	228286602	-	PFN2	chr3	149683926	-
intron-intron	ENST00000262056	ENST00000232975		ChiTaRS3.1			BG213873	EIF4B	chr12	53408728	+	TNNC1	chr3	52486122	+
intron-intron	ENST00000551527	ENST00000232975		ChiTaRS3.1			BG213873	EIF4B	chr12	53408728	+	TNNC1	chr3	52486122	+
intron-intron	ENST00000420463	ENST00000232975		ChiTaRS3.1			BG213873	EIF4B	chr12	53408728	+	TNNC1	chr3	52486122	+
intron-intron	ENST00000416762	ENST00000232975		ChiTaRS3.1			BG213873	EIF4B	chr12	53408728	+	TNNC1	chr3	52486122	+
intron-intron	ENST00000548411	ENST00000347053		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000548411	ENST00000297135		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000548411	ENST00000393603		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000548411	ENST00000475638		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000281474	ENST00000347053		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000281474	ENST00000297135		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000281474	ENST00000393603		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000281474	ENST00000475638		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551848	ENST00000347053		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551848	ENST00000297135		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551848	ENST00000393603		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551848	ENST00000475638		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000550207	ENST00000347053		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000550207	ENST00000297135		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000550207	ENST00000393603		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000550207	ENST00000475638		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551086	ENST00000347053		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551086	ENST00000297135		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551086	ENST00000393603		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
intron-intron	ENST00000551086	ENST00000475638		ChiTaRS3.1			AW751663	BICD1	chr12	32481718	+	COG5	chr7	106845261	-
3UTR-intron	ENST00000395402	ENST00000396299		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000357727		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000396300		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000409603		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000396298		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000395402	ENST00000482692		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396299		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000357727		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396300		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000409603		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000396298		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000373165	ENST00000482692		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396299		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000357727		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396300		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000409603		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000396298		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000276123	ENST00000482692		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396299		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000357727		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396300		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000409603		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000396298		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
3UTR-intron	ENST00000360700	ENST00000482692		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396299		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000357727		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396300		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000409603		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000396298		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-intron	ENST00000542798	ENST00000482692		ChiTaRS3.1			AK021493	ZNF711	chrX	84527594	+	CREB5	chr7	28764193	+
intron-3CDS	ENST00000344337	ENST00000344337		ChiTaRS3.1			BQ312483	KPNA1	chr3	122152555	+	KPNA1	chr3	122156109	-
intron-5UTR	ENST00000344337	ENST00000466923		ChiTaRS3.1			BQ312483	KPNA1	chr3	122152555	+	KPNA1	chr3	122156109	-
intron-3CDS	ENST00000466923	ENST00000344337		ChiTaRS3.1			BQ312483	KPNA1	chr3	122152555	+	KPNA1	chr3	122156109	-
intron-5UTR	ENST00000466923	ENST00000466923		ChiTaRS3.1			BQ312483	KPNA1	chr3	122152555	+	KPNA1	chr3	122156109	-
intron-intron	ENST00000422057	ENST00000422057		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000422057	ENST00000317318		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000422057	ENST00000423270		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000422057	ENST00000559447		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000317318	ENST00000422057		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000317318	ENST00000317318		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000317318	ENST00000423270		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000317318	ENST00000559447		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000423270	ENST00000422057		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000423270	ENST00000317318		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000423270	ENST00000423270		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000423270	ENST00000559447		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000559447	ENST00000422057		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000559447	ENST00000317318		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000559447	ENST00000423270		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
intron-intron	ENST00000559447	ENST00000559447		ChiTaRS3.1			BF907253	RFX7	chr15	56471771	-	RFX7	chr15	56471872	+
3UTR-5UTR	ENST00000418929	ENST00000464845		ChiTaRS3.1			CN431703	PRR12	chr19	50129056	-	NAA10	chrX	153200444	-
3UTR-5UTR	ENST00000418929	ENST00000370015		ChiTaRS3.1			CN431703	PRR12	chr19	50129056	-	NAA10	chrX	153200444	-
3UTR-intron	ENST00000418929	ENST00000393712		ChiTaRS3.1			CN431703	PRR12	chr19	50129056	-	NAA10	chrX	153200444	-
3UTR-5UTR	ENST00000418929	ENST00000370009		ChiTaRS3.1			CN431703	PRR12	chr19	50129056	-	NAA10	chrX	153200444	-
3UTR-5UTR	ENST00000418929	ENST00000393710		ChiTaRS3.1			CN431703	PRR12	chr19	50129056	-	NAA10	chrX	153200444	-
intron-3CDS	ENST00000361198	ENST00000361198		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-3CDS	ENST00000361198	ENST00000425280		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-intron	ENST00000361198	ENST00000490751		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-3CDS	ENST00000425280	ENST00000361198		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-3CDS	ENST00000425280	ENST00000425280		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-intron	ENST00000425280	ENST00000490751		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-3CDS	ENST00000490751	ENST00000361198		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-3CDS	ENST00000490751	ENST00000425280		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-intron	ENST00000490751	ENST00000490751		ChiTaRS3.1			AI768373	LDB1	chr10	103874242	+	LDB1	chr10	103869200	+
intron-intron	ENST00000369784	ENST00000355630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000369784	ENST00000396617		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000369784	ENST00000402042		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000369784	ENST00000466278		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000369784	ENST00000407029		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000369784	ENST00000402630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000355630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000396617		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000402042		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000466278		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000407029		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000487146	ENST00000402630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000355630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000396617		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000402042		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000466278		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000407029		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-intron	ENST00000602849	ENST00000402630		ChiTaRS3.1			AJ312235	RBM15	chr1	110886845	+	MKL1	chr22	40859015	-
intron-3CDS	ENST00000360004	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000360004	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000399450	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000399450	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000444645	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000444645	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000460546	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000460546	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000328980	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000328980	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000437784	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000437784	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000419393	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000419393	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-3CDS	ENST00000553034	ENST00000245907		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000553034	ENST00000599668		ChiTaRS3.1			BG951453	HLA-DRB1	chr6	3721204	+	C3	chr19	6680201	+
intron-intron	ENST00000446425	ENST00000368995		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000446425	ENST00000368993		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000446425	ENST00000322343		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000446425	ENST00000361824		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000446425	ENST00000476530		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000404924	ENST00000368995		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000404924	ENST00000368993		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000404924	ENST00000322343		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000404924	ENST00000361824		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000404924	ENST00000476530		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000309033	ENST00000368995		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000309033	ENST00000368993		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000309033	ENST00000322343		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000309033	ENST00000361824		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000309033	ENST00000476530		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000535786	ENST00000368995		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000535786	ENST00000368993		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000535786	ENST00000322343		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000535786	ENST00000361824		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-intron	ENST00000535786	ENST00000476530		ChiTaRS3.1			BE843543	UBXN2A	chr2	24160068	-	HORMAD1	chr1	150676591	+
intron-3CDS	ENST00000216181	ENST00000440909		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000448921		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000437397		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000355814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000393087		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000393088		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000404814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000449399		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000216181	ENST00000402629		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-intron	ENST00000216181	ENST00000555289		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000440909		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000448921		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000437397		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000355814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000393087		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000393088		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000404814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000449399		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000475726	ENST00000402629		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-intron	ENST00000475726	ENST00000555289		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000440909		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000448921		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000437397		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000355814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000393087		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000393088		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000404814		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000449399		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3CDS	ENST00000401701	ENST00000402629		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-intron	ENST00000401701	ENST00000555289		ChiTaRS3.1			BQ181873	MYH9	chr22	36677537	+	SERPINA1	chr14	94849113	-
intron-3UTR	ENST00000361999	ENST00000330165		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-intron	ENST00000361999	ENST00000369307		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-3UTR	ENST00000355123	ENST00000330165		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-intron	ENST00000355123	ENST00000369307		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-3UTR	ENST00000406921	ENST00000330165		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-intron	ENST00000406921	ENST00000369307		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-3UTR	ENST00000407704	ENST00000330165		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-intron	ENST00000407704	ENST00000369307		ChiTaRS3.1			BG999583	ITSN2	chr2	24432803	+	RBM8A	chr1	145511757	-
intron-intron	ENST00000378137	ENST00000368218		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000378137	ENST00000368216		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000378137	ENST00000524343		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000378137	ENST00000476229		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000378137	ENST00000481920		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000325718	ENST00000368218		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000325718	ENST00000368216		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000325718	ENST00000524343		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000325718	ENST00000476229		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000325718	ENST00000481920		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000579179	ENST00000368218		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000579179	ENST00000368216		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000579179	ENST00000524343		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000579179	ENST00000476229		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-intron	ENST00000579179	ENST00000481920		ChiTaRS3.1			BQ630893	MLLT6	chr17	36876272	+	RRNAD1	chr1	156699284	+
intron-3UTR	ENST00000367996	ENST00000319211		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-intron	ENST00000367996	ENST00000505600		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-3UTR	ENST00000478394	ENST00000319211		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-intron	ENST00000478394	ENST00000505600		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-3UTR	ENST00000367995	ENST00000319211		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-intron	ENST00000367995	ENST00000505600		ChiTaRS3.1			CA419533	ADAMTS4	chr1	161159878	+	F2R	chr5	76031015	-
intron-3CDS	ENST00000403766	ENST00000488299		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380843		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-5UTR	ENST00000403766	ENST00000380851		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000376440	ENST00000488299		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380843		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000376440	ENST00000380851		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-3CDS	ENST00000460562	ENST00000488299		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380843		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
3UTR-5UTR	ENST00000460562	ENST00000380851		ChiTaRS3.1			U49283	UBAC2	chr13	100038542	-	IDH3B	chr20	2644835	-
intron-intron	ENST00000369146	ENST00000513024		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000509638		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000508501		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000512946		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000313860		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000512632		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000512820		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000503057		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000511496		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000514096		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000509277		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000396595		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000381753		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000509454		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369146	ENST00000515785		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000513024		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000509638		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000508501		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000512946		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000313860		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000512632		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000512820		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000503057		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000511496		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000514096		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000509277		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000396595		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000381753		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000509454		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-intron	ENST00000369145	ENST00000515785		ChiTaRS3.1			AA582263	SV2A	chr1	149875217	+	LIMCH1	chr4	41643447	+
intron-3CDS	ENST00000281419	ENST00000281419		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-3CDS	ENST00000281419	ENST00000315273		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-intron	ENST00000281419	ENST00000491413		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-3CDS	ENST00000315273	ENST00000281419		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-3CDS	ENST00000315273	ENST00000315273		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-intron	ENST00000315273	ENST00000491413		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-3CDS	ENST00000491413	ENST00000281419		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-3CDS	ENST00000491413	ENST00000315273		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-intron	ENST00000491413	ENST00000491413		ChiTaRS3.1			AW295763	ASAP2	chr2	9437428	-	ASAP2	chr2	9525417	-
intron-intron	ENST00000481781	ENST00000476233		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000481781	ENST00000354667		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000481781	ENST00000356674		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000397270	ENST00000476233		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000397270	ENST00000354667		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000397270	ENST00000356674		ChiTaRS3.1			CB218603	INS-IGF2	chr11	2150446	+	HNRNPA2B1	chr7	26236608	+
intron-intron	ENST00000370143	ENST00000370143		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370143	ENST00000370141		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370143	ENST00000370139		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370143	ENST00000493651		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370141	ENST00000370143		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370141	ENST00000370141		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370141	ENST00000370139		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370141	ENST00000493651		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370139	ENST00000370143		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370139	ENST00000370141		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370139	ENST00000370139		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000370139	ENST00000493651		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000493651	ENST00000370143		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000493651	ENST00000370141		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000493651	ENST00000370139		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
intron-intron	ENST00000493651	ENST00000493651		ChiTaRS3.1			BG391243	TRMT13	chr1	100611376	-	TRMT13	chr1	100611476	+
3UTR-intron	ENST00000286800	ENST00000434724		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000439887		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000563468		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000420576		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000564790		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000434724		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000439887		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000563468		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000420576		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000564790		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000434724		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000439887		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000563468		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000420576		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000564790		ChiTaRS3.1			BE814683	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000315127	ENST00000315127		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000315127	ENST00000426797		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000315127	ENST00000568176		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000315127	ENST00000562047		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000426797	ENST00000315127		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000426797	ENST00000426797		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000426797	ENST00000568176		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000426797	ENST00000562047		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000568176	ENST00000315127		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000568176	ENST00000426797		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000568176	ENST00000568176		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000568176	ENST00000562047		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000562047	ENST00000315127		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000562047	ENST00000426797		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000562047	ENST00000568176		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
intron-intron	ENST00000562047	ENST00000562047		ChiTaRS3.1			BE095213	EDC3	chr15	74925601	+	EDC3	chr15	74925665	-
3UTR-intron	ENST00000255006	ENST00000355377		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000255006	ENST00000562034		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000255006	ENST00000562711		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000255006	ENST00000568433		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000255006	ENST00000568115		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
intron-intron	ENST00000440354	ENST00000355377		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
intron-intron	ENST00000440354	ENST00000562034		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
intron-intron	ENST00000440354	ENST00000562711		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
intron-intron	ENST00000440354	ENST00000568433		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
intron-intron	ENST00000440354	ENST00000568115		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000484638	ENST00000355377		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000484638	ENST00000562034		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000484638	ENST00000562711		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000484638	ENST00000568433		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
3UTR-intron	ENST00000484638	ENST00000568115		ChiTaRS3.1			BI002773	RIN2	chr20	19982482	+	SYT17	chr16	19186627	-
In-frame	ENST00000262461	ENST00000262461		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
In-frame	ENST00000262461	ENST00000343225		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
5CDS-intron	ENST00000262461	ENST00000507791		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
In-frame	ENST00000343225	ENST00000262461		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
In-frame	ENST00000343225	ENST00000343225		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
5CDS-intron	ENST00000343225	ENST00000507791		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
intron-3CDS	ENST00000507791	ENST00000262461		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
intron-3CDS	ENST00000507791	ENST00000343225		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
intron-intron	ENST00000507791	ENST00000507791		ChiTaRS3.1			BQ440563	SLC12A2	chr5	127497365	-	SLC12A2	chr5	127497408	+
intron-intron	ENST00000476844	ENST00000253008		ChiTaRS3.1			BF370943	FHIT	chr3	60213935	+	PRDM12	chr9	133551986	+
intron-intron	ENST00000492590	ENST00000253008		ChiTaRS3.1			BF370943	FHIT	chr3	60213935	+	PRDM12	chr9	133551986	+
intron-intron	ENST00000466788	ENST00000253008		ChiTaRS3.1			BF370943	FHIT	chr3	60213935	+	PRDM12	chr9	133551986	+
intron-intron	ENST00000468189	ENST00000253008		ChiTaRS3.1			BF370943	FHIT	chr3	60213935	+	PRDM12	chr9	133551986	+
intron-intron	ENST00000341848	ENST00000253008		ChiTaRS3.1			BF370943	FHIT	chr3	60213935	+	PRDM12	chr9	133551986	+
5CDS-intron	ENST00000412460	ENST00000412460		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
5CDS-intron	ENST00000412460	ENST00000262210		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
5CDS-intron	ENST00000412460	ENST00000521168		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
5CDS-intron	ENST00000262210	ENST00000412460		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
5CDS-intron	ENST00000262210	ENST00000262210		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
5CDS-intron	ENST00000262210	ENST00000521168		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
intron-intron	ENST00000521168	ENST00000412460		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
intron-intron	ENST00000521168	ENST00000262210		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
intron-intron	ENST00000521168	ENST00000521168		ChiTaRS3.1			AK026143	CSPP1	chr8	68107798	+	CSPP1	chr8	68062148	+
intron-intron	ENST00000265044	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000265044	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000265044	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000265044	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000265044	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000467789	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000467789	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000467789	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000467789	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000467789	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000476217	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000476217	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000476217	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000476217	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000476217	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000478842	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000478842	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000478842	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000478842	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000478842	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000463503	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000463503	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000463503	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000463503	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000463503	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000496050	ENST00000493952		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000496050	ENST00000338745		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000496050	ENST00000417717		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000496050	ENST00000454909		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
intron-intron	ENST00000496050	ENST00000475083		ChiTaRS3.1			AW994363	SSR3	chr3	156272827	+	SATB1	chr3	18419661	+
5UTR-3UTR	ENST00000357395	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5UTR-3UTR	ENST00000357395	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5UTR-intron	ENST00000357395	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5UTR-intron	ENST00000357395	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5UTR-intron	ENST00000357395	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000358025	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000358025	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000358025	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000358025	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000358025	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000344113	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000344113	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000344113	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000344113	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000344113	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000341472	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000341472	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000341472	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000341472	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000341472	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000356081	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000356081	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000356081	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000356081	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000356081	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000554584	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-3UTR	ENST00000554584	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000554584	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000554584	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
5CDS-intron	ENST00000554584	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000555002	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000555002	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555002	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555002	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555002	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000394768	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000394768	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000394768	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000394768	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000394768	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000556725	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000556725	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000556725	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000556725	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000556725	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000553455	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000553455	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000553455	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000553455	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000553455	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000555022	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000555022	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555022	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555022	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000555022	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000554805	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000554805	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000554805	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000554805	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000554805	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000458046	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000458046	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000458046	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000458046	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000458046	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000441438	ENST00000341533		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3UTR	ENST00000441438	ENST00000417955		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000441438	ENST00000465647		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000441438	ENST00000455523		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-intron	ENST00000441438	ENST00000427257		ChiTaRS3.1			AW753213	SYNE2	chr14	64519712	+	NAPEPLD	chr7	102741245	+
intron-3CDS	ENST00000390548	ENST00000341547		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-3CDS	ENST00000390548	ENST00000357063		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-3CDS	ENST00000390548	ENST00000377534		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-3CDS	ENST00000390548	ENST00000321797		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-3CDS	ENST00000390548	ENST00000526202		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-3CDS	ENST00000390548	ENST00000465261		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
intron-intron	ENST00000390548	ENST00000605961		ChiTaRS3.1			AW867513	IGHG1	chr14	106174216	+	LMO7	chr13	76427378	-
3UTR-3UTR	ENST00000479606	ENST00000479606		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
3UTR-3UTR	ENST00000479606	ENST00000215739		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
3UTR-3UTR	ENST00000479606	ENST00000389355		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000479606		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000215739		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000215739	ENST00000389355		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000479606		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000215739		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
5CDS-3UTR	ENST00000389355	ENST00000389355		ChiTaRS3.1			BM791713	LZTR1	chr22	21351593	+	LZTR1	chr22	21345953	+
intron-5UTR	ENST00000282120	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000282120	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000282120	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-5UTR	ENST00000377386	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000377386	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000377386	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-5UTR	ENST00000398263	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000398263	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000398263	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-5UTR	ENST00000409232	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000409232	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000409232	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-5UTR	ENST00000409015	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000409015	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000409015	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-5UTR	ENST00000444342	ENST00000483612		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000444342	ENST00000292401		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-3UTR	ENST00000444342	ENST00000411734		ChiTaRS3.1			BE897753	TGOLN2	chr2	85547507	-	AZGP1	chr7	99564417	-
intron-intron	ENST00000434981	ENST00000434981		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000434981	ENST00000507506		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000434981	ENST00000239906		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000434981	ENST00000513056		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000434981		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000507506		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000507506	ENST00000239906		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000507506	ENST00000513056		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000434981		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000507506		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-3UTR	ENST00000239906	ENST00000239906		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
3UTR-intron	ENST00000239906	ENST00000513056		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000434981		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000507506		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3UTR	ENST00000513056	ENST00000239906		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-intron	ENST00000513056	ENST00000513056		ChiTaRS3.1			CB306663	FAM53C	chr5	137685119	-	FAM53C	chr5	137684987	+
intron-3CDS	ENST00000544484	ENST00000343110		ChiTaRS3.1			BF986263	CHD4	chr12	6710130	+	PRELP	chr1	203452442	+
intron-3CDS	ENST00000357008	ENST00000343110		ChiTaRS3.1			BF986263	CHD4	chr12	6710130	+	PRELP	chr1	203452442	+
intron-3CDS	ENST00000309577	ENST00000343110		ChiTaRS3.1			BF986263	CHD4	chr12	6710130	+	PRELP	chr1	203452442	+
intron-3CDS	ENST00000544040	ENST00000343110		ChiTaRS3.1			BF986263	CHD4	chr12	6710130	+	PRELP	chr1	203452442	+
intron-3CDS	ENST00000540960	ENST00000343110		ChiTaRS3.1			BF986263	CHD4	chr12	6710130	+	PRELP	chr1	203452442	+
intron-intron	ENST00000521891	ENST00000298834		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000426438		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000314845		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000533727		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000534300		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000458649		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000528950		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000529963		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000298834		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000426438		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000314845		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000533727		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000534300		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000458649		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000528950		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000529963		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000298834		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000426438		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000314845		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000533727		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000534300		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000458649		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000528950		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000529963		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000298834		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000426438		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000314845		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000533727		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000534300		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000458649		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000528950		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000529963		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000298834		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000426438		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000314845		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000533727		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000534300		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000458649		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000528950		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000529963		ChiTaRS3.1			AW609203	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-3UTR	ENST00000524803	ENST00000234590		ChiTaRS3.1			BI023233	SAAL1	chr11	18103075	-	ENO1	chr1	8921085	+
intron-3UTR	ENST00000300013	ENST00000234590		ChiTaRS3.1			BI023233	SAAL1	chr11	18103075	-	ENO1	chr1	8921085	+
intron-3UTR	ENST00000529318	ENST00000234590		ChiTaRS3.1			BI023233	SAAL1	chr11	18103075	-	ENO1	chr1	8921085	+
intron-3UTR	ENST00000533851	ENST00000234590		ChiTaRS3.1			BI023233	SAAL1	chr11	18103075	-	ENO1	chr1	8921085	+
intron-intron	ENST00000410024	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000410024	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000410024	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409295	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409295	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409091	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-3UTR	ENST00000409091	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000350033	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000350033	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000410017	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000410017	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000410024		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409295		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-intron	ENST00000373608	ENST00000409091		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000350033		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000410017		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
3UTR-3UTR	ENST00000373608	ENST00000373608		ChiTaRS3.1			BG685453	COPS7B	chr2	232672642	-	COPS7B	chr2	232672782	+
intron-intron	ENST00000409592	ENST00000263801		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000409592	ENST00000382039		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000409592	ENST00000382044		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000409592	ENST00000450115		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000409592	ENST00000605155		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000258390	ENST00000263801		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000258390	ENST00000382039		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000258390	ENST00000382044		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000258390	ENST00000450115		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000258390	ENST00000605155		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000474102	ENST00000263801		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000474102	ENST00000382039		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000474102	ENST00000382044		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000474102	ENST00000450115		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000474102	ENST00000605155		ChiTaRS3.1			BE503333	DOCK10	chr2	225644037	+	TP53BP1	chr15	43778558	+
intron-intron	ENST00000565698	ENST00000565698		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000565698	ENST00000304658		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000565698	ENST00000561488		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000304658	ENST00000565698		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000304658	ENST00000304658		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000304658	ENST00000561488		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000561488	ENST00000565698		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000561488	ENST00000304658		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000561488	ENST00000561488		ChiTaRS3.1			AA643733	XPO6	chr16	28109855	-	XPO6	chr16	28112058	-
intron-intron	ENST00000356634	ENST00000356634		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000356634	ENST00000400181		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000356634	ENST00000542151		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000400181	ENST00000356634		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000400181	ENST00000400181		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000400181	ENST00000542151		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000542151	ENST00000356634		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000542151	ENST00000400181		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-intron	ENST00000542151	ENST00000542151		ChiTaRS3.1			AW995373	KDM1A	chr1	23398428	-	KDM1A	chr1	23399141	-
intron-3UTR	ENST00000272438	ENST00000272438		ChiTaRS3.1			BE698523	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-intron	ENST00000272438	ENST00000466731		ChiTaRS3.1			BE698523	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-3UTR	ENST00000466731	ENST00000272438		ChiTaRS3.1			BE698523	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-intron	ENST00000466731	ENST00000466731		ChiTaRS3.1			BE698523	TEX261	chr2	71214421	-	TEX261	chr2	71215024	-
intron-3UTR	ENST00000327987	ENST00000375712		ChiTaRS3.1			R24423	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000327987	ENST00000418717		ChiTaRS3.1			R24423	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000559231	ENST00000375712		ChiTaRS3.1			R24423	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-intron	ENST00000559231	ENST00000418717		ChiTaRS3.1			R24423	IGDCC3	chr15	65621004	+	KIF3B	chr20	30922597	+
intron-3UTR	ENST00000355621	ENST00000355621		ChiTaRS3.1			BF844193	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-intron	ENST00000355621	ENST00000473814		ChiTaRS3.1			BF844193	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-3UTR	ENST00000473814	ENST00000355621		ChiTaRS3.1			BF844193	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-intron	ENST00000473814	ENST00000473814		ChiTaRS3.1			BF844193	UBE2H	chr7	129471040	+	UBE2H	chr7	129471342	-
intron-3CDS	ENST00000291568	ENST00000222284		ChiTaRS3.1			BQ691473	CSTB	chr21	45196160	+	TMEM147	chr19	36037464	+
intron-3CDS	ENST00000291568	ENST00000392204		ChiTaRS3.1			BQ691473	CSTB	chr21	45196160	+	TMEM147	chr19	36037464	+
intron-3CDS	ENST00000291568	ENST00000392205		ChiTaRS3.1			BQ691473	CSTB	chr21	45196160	+	TMEM147	chr19	36037464	+
intron-intron	ENST00000550629	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000550629	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000465950	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000369367	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000549162	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000419565	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395454	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000274542		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000519865		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000424310		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000521606		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000518802		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000520638		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-intron	ENST00000395453	ENST00000518284		ChiTaRS3.1			BP396283	SCAF11	chr12	46316831	+	RNF145	chr5	158622628	-
intron-3CDS	ENST00000304043	ENST00000304043		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000304043	ENST00000506207		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000304043	ENST00000508488		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000304043	ENST00000506908		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000304043	ENST00000513012		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-3CDS	ENST00000506207	ENST00000304043		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506207	ENST00000506207		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506207	ENST00000508488		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506207	ENST00000506908		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506207	ENST00000513012		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-3CDS	ENST00000508488	ENST00000304043		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000508488	ENST00000506207		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000508488	ENST00000508488		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000508488	ENST00000506908		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000508488	ENST00000513012		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-3CDS	ENST00000506908	ENST00000304043		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506908	ENST00000506207		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506908	ENST00000508488		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506908	ENST00000506908		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000506908	ENST00000513012		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-3CDS	ENST00000513012	ENST00000304043		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000513012	ENST00000506207		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000513012	ENST00000508488		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000513012	ENST00000506908		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
intron-intron	ENST00000513012	ENST00000513012		ChiTaRS3.1			BQ775173	HINT1	chr5	130495263	+	HINT1	chr5	130500837	-
Frame-shit	ENST00000426496	ENST00000426496		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000426496	ENST00000392078		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000476522		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000367742		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000426496	ENST00000338920		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000426496		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000392078	ENST00000392078		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000476522		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000367742		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000392078	ENST00000338920		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000426496		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3CDS	ENST00000476522	ENST00000392078		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000476522		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000367742		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
3UTR-3UTR	ENST00000476522	ENST00000338920		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000426496		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000367742	ENST00000392078		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000476522		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000367742		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000367742	ENST00000338920		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000426496		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
Frame-shit	ENST00000338920	ENST00000392078		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000476522		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000367742		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
5CDS-3UTR	ENST00000338920	ENST00000338920		ChiTaRS3.1			BE156213	PRRC2C	chr1	171496978	+	PRRC2C	chr1	171492429	-
intron-3UTR	ENST00000368911	ENST00000368911		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000368911	ENST00000323817		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000368911	ENST00000413605		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000368911	ENST00000497709		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000323817	ENST00000368911		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000323817	ENST00000323817		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000323817	ENST00000413605		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000323817	ENST00000497709		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000413605	ENST00000368911		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000413605	ENST00000323817		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000413605	ENST00000413605		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000413605	ENST00000497709		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000497709	ENST00000368911		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-3UTR	ENST00000497709	ENST00000323817		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000497709	ENST00000413605		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
intron-intron	ENST00000497709	ENST00000497709		ChiTaRS3.1			CN411943	CDK19	chr6	110932473	+	CDK19	chr6	110932427	-
3UTR-intron	ENST00000316156	ENST00000525566		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000429002		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000503506		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000526691		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000388854		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000354940		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000526390		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000529546		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000540716		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000524698		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000542918		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000378070		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000397736		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000427956		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000526950		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000316156	ENST00000526006		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000525566		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000429002		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000503506		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000526691		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000388854		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000354940		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000526390		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000529546		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000540716		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000524698		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000542918		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000378070		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000397736		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000427956		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000526950		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373150	ENST00000526006		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000525566		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000429002		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000503506		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000526691		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000388854		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000354940		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000526390		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000529546		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000540716		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000524698		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000542918		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000378070		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000397736		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000427956		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000526950		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373151	ENST00000526006		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000525566		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000429002		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000503506		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000526691		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000388854		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000354940		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000526390		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000529546		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000540716		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000524698		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000542918		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000378070		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000397736		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000427956		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000526950		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-intron	ENST00000474796	ENST00000526006		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000525566		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000429002		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000503506		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000526691		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000388854		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000354940		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000526390		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000529546		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000540716		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000524698		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000542918		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000378070		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000397736		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000427956		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000526950		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
3UTR-intron	ENST00000373148	ENST00000526006		ChiTaRS3.1			BG231003	MAP7D1	chr1	36646372	-	TXNRD1	chr12	104659425	-
intron-3CDS	ENST00000546159	ENST00000296755		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000546159	ENST00000504183		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-3CDS	ENST00000486375	ENST00000296755		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000486375	ENST00000504183		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-3CDS	ENST00000367521	ENST00000296755		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000367521	ENST00000504183		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-3CDS	ENST00000361927	ENST00000296755		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000361927	ENST00000504183		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-3CDS	ENST00000367520	ENST00000296755		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000367520	ENST00000504183		ChiTaRS3.1			AW898183	COLGALT2	chr1	184005347	+	MAP1B	chr5	71492164	-
intron-intron	ENST00000418820	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000593948	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000270077	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000291752	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000443718	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000244293	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-intron	ENST00000596730	ENST00000268099		ChiTaRS3.1			BG007323	PSG9	chr19	43772203	+	SCAMP2	chr15	75144138	+
intron-3UTR	ENST00000430334	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-3UTR	ENST00000580404	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-3UTR	ENST00000421073	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-3UTR	ENST00000547603	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-3UTR	ENST00000548376	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-3UTR	ENST00000549277	ENST00000262888		ChiTaRS3.1			AW953723	PLEKHM1	chr17	146662	-	KCNN4	chr19	44270970	-
intron-intron	ENST00000565644	ENST00000373953		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000565644	ENST00000440666		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000565644	ENST00000339411		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000565644	ENST00000482946		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000261622	ENST00000373953		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000261622	ENST00000440666		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000261622	ENST00000339411		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-intron	ENST00000261622	ENST00000482946		ChiTaRS3.1			BQ377733	SLC7A5	chr16	87863689	-	ZNF76	chr6	35264114	-
intron-3CDS	ENST00000222254	ENST00000392096		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
intron-5UTR	ENST00000222254	ENST00000487181		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
intron-5UTR	ENST00000222254	ENST00000295728		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
3UTR-3CDS	ENST00000593731	ENST00000392096		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
3UTR-5UTR	ENST00000593731	ENST00000487181		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
3UTR-5UTR	ENST00000593731	ENST00000295728		ChiTaRS3.1			BP385893	PIK3R2	chr19	18284637	-	CRYBA2	chr2	219855640	-
intron-intron	ENST00000390168	ENST00000390168		ChiTaRS3.1			AA991753	H19	chr11	2016649	-	H19	chr11	2017926	-
intron-intron	ENST00000260184	ENST00000260184		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000260184	ENST00000511577		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000260184	ENST00000505890		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000260184	ENST00000515088		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000511577	ENST00000260184		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000511577	ENST00000511577		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000511577	ENST00000505890		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000511577	ENST00000515088		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000505890	ENST00000260184		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000505890	ENST00000511577		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000505890	ENST00000505890		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000505890	ENST00000515088		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000515088	ENST00000260184		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000515088	ENST00000511577		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000515088	ENST00000505890		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000515088	ENST00000515088		ChiTaRS3.1			AI432413	DDX60L	chr4	169314066	-	DDX60L	chr4	169339266	-
intron-intron	ENST00000328252	ENST00000328252		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000328252	ENST00000534838		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000328252	ENST00000483254		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000534838	ENST00000328252		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000534838	ENST00000534838		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000534838	ENST00000483254		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000483254	ENST00000328252		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000483254	ENST00000534838		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
intron-intron	ENST00000483254	ENST00000483254		ChiTaRS3.1			CV404853	PAPPA	chr9	118966133	+	PAPPA	chr9	118965521	+
3UTR-3CDS	ENST00000216487	ENST00000216487		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
3UTR-3UTR	ENST00000216487	ENST00000418924		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
3UTR-intron	ENST00000216487	ENST00000557762		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
3UTR-3CDS	ENST00000418924	ENST00000216487		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
3UTR-3UTR	ENST00000418924	ENST00000418924		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
3UTR-intron	ENST00000418924	ENST00000557762		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
intron-3CDS	ENST00000557762	ENST00000216487		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
intron-3UTR	ENST00000557762	ENST00000418924		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
intron-intron	ENST00000557762	ENST00000557762		ChiTaRS3.1			BM707843	RIN3	chr14	93155090	-	RIN3	chr14	93142869	+
In-frame	ENST00000260970	ENST00000260970		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
In-frame	ENST00000260970	ENST00000409714		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
In-frame	ENST00000260970	ENST00000462903		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
In-frame	ENST00000260970	ENST00000448752		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
5CDS-intron	ENST00000260970	ENST00000482772		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000409714	ENST00000260970		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000409714	ENST00000409714		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000409714	ENST00000462903		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000409714	ENST00000448752		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
5CDS-intron	ENST00000409714	ENST00000482772		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000462903	ENST00000260970		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000462903	ENST00000409714		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000462903	ENST00000462903		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000462903	ENST00000448752		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-intron	ENST00000462903	ENST00000482772		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000448752	ENST00000260970		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000448752	ENST00000409714		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000448752	ENST00000462903		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
Frame-shit	ENST00000448752	ENST00000448752		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
5CDS-intron	ENST00000448752	ENST00000482772		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000482772	ENST00000260970		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000482772	ENST00000409714		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000482772	ENST00000462903		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-3CDS	ENST00000482772	ENST00000448752		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-intron	ENST00000482772	ENST00000482772		ChiTaRS3.1			CN282143	PPIG	chr2	170493419	+	PPIG	chr2	170465243	+
intron-intron	ENST00000575142	ENST00000575142		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000575142	ENST00000206020		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000575142	ENST00000573366		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000575142	ENST00000571023		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000206020	ENST00000575142		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000206020	ENST00000206020		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000206020	ENST00000573366		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000206020	ENST00000571023		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000573366	ENST00000575142		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000573366	ENST00000206020		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000573366	ENST00000573366		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000573366	ENST00000571023		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000571023	ENST00000575142		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000571023	ENST00000206020		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000571023	ENST00000573366		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
intron-intron	ENST00000571023	ENST00000571023		ChiTaRS3.1			BX507103	SPAG7	chr17	4870559	+	SPAG7	chr17	4871199	-
Frame-shit	ENST00000254579	ENST00000334274		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000254579	ENST00000530171		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000254579	ENST00000432887		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000254579	ENST00000531632		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000254579	ENST00000324357		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
Frame-shit	ENST00000527990	ENST00000334274		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000527990	ENST00000530171		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000527990	ENST00000432887		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000527990	ENST00000531632		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000527990	ENST00000324357		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-3CDS	ENST00000354685	ENST00000334274		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000354685	ENST00000530171		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000354685	ENST00000432887		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000354685	ENST00000531632		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000354685	ENST00000324357		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-3CDS	ENST00000477562	ENST00000334274		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000477562	ENST00000530171		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000477562	ENST00000432887		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000477562	ENST00000531632		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
intron-intron	ENST00000477562	ENST00000324357		ChiTaRS3.1			BQ330913	DNHD1	chr11	6569134	+	TCP11L1	chr11	33083236	-
5CDS-intron	ENST00000374272	ENST00000304058		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
5CDS-intron	ENST00000374272	ENST00000510708		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
5CDS-intron	ENST00000374272	ENST00000515439		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
intron-intron	ENST00000483052	ENST00000304058		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
intron-intron	ENST00000483052	ENST00000510708		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
intron-intron	ENST00000483052	ENST00000515439		ChiTaRS3.1			BT007373	TRIM63	chr1	26383698	-	DTWD2	chr5	118309753	+
intron-3UTR	ENST00000539317	ENST00000373302		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-3UTR	ENST00000539317	ENST00000373299		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-intron	ENST00000539317	ENST00000481942		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-3UTR	ENST00000487871	ENST00000373302		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-3UTR	ENST00000487871	ENST00000373299		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-intron	ENST00000487871	ENST00000481942		ChiTaRS3.1			BI059823	SMAP2	chr1	40885578	+	STXBP1	chr9	130453144	-
intron-intron	ENST00000361961	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-intron	ENST00000395670	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-intron	ENST00000544797	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-intron	ENST00000361418	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-intron	ENST00000541463	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-intron	ENST00000547745	ENST00000244221		ChiTaRS3.1			BF920813	KIF21A	chr12	39809326	-	PAIP2B	chr2	71450823	+
intron-3UTR	ENST00000582730	ENST00000582730		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000582730	ENST00000581497		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000582730	ENST00000584773		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000582730	ENST00000585096		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000582730	ENST00000258962		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-3UTR	ENST00000581497	ENST00000582730		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000581497	ENST00000581497		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000581497	ENST00000584773		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000581497	ENST00000585096		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000581497	ENST00000258962		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-3UTR	ENST00000584773	ENST00000582730		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000584773	ENST00000581497		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000584773	ENST00000584773		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000584773	ENST00000585096		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000584773	ENST00000258962		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-3UTR	ENST00000585096	ENST00000582730		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000585096	ENST00000581497		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000585096	ENST00000584773		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000585096	ENST00000585096		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000585096	ENST00000258962		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-3UTR	ENST00000258962	ENST00000582730		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000258962	ENST00000581497		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000258962	ENST00000584773		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000258962	ENST00000585096		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000258962	ENST00000258962		ChiTaRS3.1			BF996053	SRSF1	chr17	56081370	-	SRSF1	chr17	56081238	+
intron-intron	ENST00000277198	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000277198	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000277198	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000277198	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000297979	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000297979	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000297979	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000297979	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000375315	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000375315	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000375315	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000375315	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000395357	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000395357	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000395357	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000395357	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000425634	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000425634	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000425634	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000425634	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000433691	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000433691	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000433691	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000433691	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000473778	ENST00000229340		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000473778	ENST00000432953		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000473778	ENST00000534951		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000473778	ENST00000543364		ChiTaRS3.1			BP346073	C9orf3	chr9	97572870	+	RAB35	chr12	120549246	-
intron-intron	ENST00000536122	ENST00000360416		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000379980		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000396239		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000536122	ENST00000269243		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000360416		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000379980		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000396239		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000268699	ENST00000269243		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000360416		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000379980		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000396239		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000540721	ENST00000269243		ChiTaRS3.1			BE153343	GAS8	chr16	90096450	-	MYH10	chr17	8512432	+
intron-intron	ENST00000264657	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000264657	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000264657	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000264657	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000264657	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000264657	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000585517	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000389272	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000588969	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000404395	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000264657		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000585517		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000389272		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000588969		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000404395		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-intron	ENST00000590776	ENST00000590776		ChiTaRS3.1			AW771913	STAT3	chr17	40538041	+	STAT3	chr17	40532338	+
intron-3UTR	ENST00000231061	ENST00000231061		ChiTaRS3.1			BG119923	SPARC	chr5	151042263	+	SPARC	chr5	151042111	-
intron-intron	ENST00000231061	ENST00000537849		ChiTaRS3.1			BG119923	SPARC	chr5	151042263	+	SPARC	chr5	151042111	-
intron-3UTR	ENST00000537849	ENST00000231061		ChiTaRS3.1			BG119923	SPARC	chr5	151042263	+	SPARC	chr5	151042111	-
intron-intron	ENST00000537849	ENST00000537849		ChiTaRS3.1			BG119923	SPARC	chr5	151042263	+	SPARC	chr5	151042111	-
intron-intron	ENST00000376227	ENST00000275605		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-intron	ENST00000376227	ENST00000395471		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-intron	ENST00000376227	ENST00000459834		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-intron	ENST00000496651	ENST00000275605		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-intron	ENST00000496651	ENST00000395471		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-intron	ENST00000496651	ENST00000459834		ChiTaRS3.1			CA442113	CCDC22	chrX	49107333	+	PSPH	chr7	56131594	+
intron-3UTR	ENST00000518527	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000518527	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000518527	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000518527	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000377360	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000377360	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000328939	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000328939	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000390656	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000390656	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000520740	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000520740	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000434108	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000434108	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000407327		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000335757		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-3UTR	ENST00000411494	ENST00000586078		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000411494	ENST00000588214		ChiTaRS3.1			BF376933	KCNIP1	chr5	170050965	+	SLC44A2	chr19	10754082	+
intron-intron	ENST00000302640	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000302640	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000354582	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000354582	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000423119	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000423119	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000456211	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000456211	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000357086	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000357086	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000544951	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000544951	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000443694	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000443694	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000463980	ENST00000331159		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-intron	ENST00000463980	ENST00000577233		ChiTaRS3.1			BF820643	ITPR1	chr3	4593932	+	SOCS7	chr17	36561397	-
intron-3CDS	ENST00000559237	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000559237	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559237	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559237	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559237	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559237	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000267807	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000267807	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000267807	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000267807	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000267807	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000267807	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000559000	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000559000	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559000	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559000	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559000	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000559000	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000396245	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000396245	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000396245	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000396245	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000396245	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000396245	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000558320	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000558320	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000558320	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000558320	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000558320	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000558320	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000561122	ENST00000559237		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-3CDS	ENST00000561122	ENST00000267807		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000561122	ENST00000559000		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000561122	ENST00000396245		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000561122	ENST00000558320		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
intron-intron	ENST00000561122	ENST00000561122		ChiTaRS3.1			CK429383	ZNF280D	chr15	56923766	+	ZNF280D	chr15	56923720	-
In-frame	ENST00000286398	ENST00000286398		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000374793		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000303219		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000286398	ENST00000374787		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000286398		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000374793		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000303219		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374793	ENST00000374787		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000286398		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000374793		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000303219		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000303219	ENST00000374787		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000286398		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000374793		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000303219		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
In-frame	ENST00000374787	ENST00000374787		ChiTaRS3.1			AW510653	SMC2	chr9	106864347	-	SMC2	chr9	106875634	-
intron-intron	ENST00000441310	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000441310	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000418224	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409823	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000421722	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000447232	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000432292	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000409985	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000421182		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000357867		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000323926		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000336916		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000354785		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000357009		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000346544		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000345488		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000359671		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000446046		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000443816		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000432072		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000356005		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000490833		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
intron-intron	ENST00000374826	ENST00000426059		ChiTaRS3.1			H77493	PMS1	chr2	190652767	+	FN1	chr2	216231498	-
3UTR-intron	ENST00000497986	ENST00000497986		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-intron	ENST00000497986	ENST00000335514		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-intron	ENST00000497986	ENST00000468425		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-3UTR	ENST00000497986	ENST00000465645		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
5CDS-intron	ENST00000335514	ENST00000497986		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
5CDS-intron	ENST00000335514	ENST00000335514		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
5CDS-intron	ENST00000335514	ENST00000468425		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
5CDS-3UTR	ENST00000335514	ENST00000465645		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
intron-intron	ENST00000468425	ENST00000497986		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
intron-intron	ENST00000468425	ENST00000335514		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
intron-intron	ENST00000468425	ENST00000468425		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
intron-3UTR	ENST00000468425	ENST00000465645		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-intron	ENST00000465645	ENST00000497986		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-intron	ENST00000465645	ENST00000335514		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-intron	ENST00000465645	ENST00000468425		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-3UTR	ENST00000465645	ENST00000465645		ChiTaRS3.1			D45323	ATPIF1	chr1	28564390	+	ATPIF1	chr1	28563511	+
3UTR-3UTR	ENST00000482108	ENST00000482108		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
3UTR-intron	ENST00000482108	ENST00000488574		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
3UTR-intron	ENST00000482108	ENST00000465184		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-3UTR	ENST00000488574	ENST00000482108		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-intron	ENST00000488574	ENST00000488574		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-intron	ENST00000488574	ENST00000465184		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-3UTR	ENST00000465184	ENST00000482108		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-intron	ENST00000465184	ENST00000488574		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-intron	ENST00000465184	ENST00000465184		ChiTaRS3.1			BG819303	PEG10	chr7	94297929	-	PEG10	chr7	94297962	+
intron-intron	ENST00000403028	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000403028	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000403028	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000403028	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000403028	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000403028	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000329873	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000559223	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000558653	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
5UTR-intron	ENST00000251250	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000403028		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000329873		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000559223		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000558653		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000251250		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
intron-intron	ENST00000415425	ENST00000415425		ChiTaRS3.1			AW103673	DTWD1	chr15	49916001	-	DTWD1	chr15	49915407	+
3UTR-3CDS	ENST00000517503	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000517503	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000292494	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000292494	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000429120	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000429120	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000521699	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521699	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000520531	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000520531	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000520466	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000520466	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000521003	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000521003	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522528	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522528	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522971	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522971	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000519611	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519611	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000521182	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000521182	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-3CDS	ENST00000519546	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
3UTR-intron	ENST00000519546	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000523847	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000523847	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000522024	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000522024	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-3CDS	ENST00000519615	ENST00000368554		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000361518		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000359035		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000519615	ENST00000463816		ChiTaRS3.1			CB164673	LY6E	chr8	144103623	-	ZNF511	chr10	135163622	+
intron-intron	ENST00000262013	ENST00000341329		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-5UTR	ENST00000262013	ENST00000392062		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000262013	ENST00000409053		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000262013	ENST00000493526		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000505279	ENST00000341329		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-5UTR	ENST00000505279	ENST00000392062		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000505279	ENST00000409053		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000505279	ENST00000493526		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000357122	ENST00000341329		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-5UTR	ENST00000357122	ENST00000392062		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000357122	ENST00000409053		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000357122	ENST00000493526		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000509724	ENST00000341329		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-5UTR	ENST00000509724	ENST00000392062		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000509724	ENST00000409053		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
intron-intron	ENST00000509724	ENST00000493526		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
5CDS-intron	ENST00000510283	ENST00000341329		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
5CDS-5UTR	ENST00000510283	ENST00000392062		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
5CDS-intron	ENST00000510283	ENST00000409053		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
5CDS-intron	ENST00000510283	ENST00000493526		ChiTaRS3.1			DA315303	SPAG9	chr17	49123860	-	RHBDD1	chr2	227702785	+
3UTR-3UTR	ENST00000233735	ENST00000233735		ChiTaRS3.1			CA842583	REG1A	chr2	79350395	-	REG1A	chr2	79350465	+
intron-intron	ENST00000374580	ENST00000299240		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000374580	ENST00000039989		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000374580	ENST00000526774		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000374574	ENST00000299240		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000374574	ENST00000039989		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000374574	ENST00000526774		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000479069	ENST00000299240		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000479069	ENST00000039989		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000479069	ENST00000526774		ChiTaRS3.1			BF360283	BMPR2	chr2	203257956	-	TTC17	chr11	43425252	+
intron-intron	ENST00000233331	ENST00000233616		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000233331	ENST00000452063		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000233331	ENST00000409065		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000233331	ENST00000462443		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000233331	ENST00000535045		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000409917	ENST00000233616		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000409917	ENST00000452063		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000409917	ENST00000409065		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000409917	ENST00000462443		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000409917	ENST00000535045		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000469849	ENST00000233616		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000469849	ENST00000452063		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000469849	ENST00000409065		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000469849	ENST00000462443		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000469849	ENST00000535045		ChiTaRS3.1			DA571383	INO80B	chr2	74686976	-	MOGS	chr2	74691965	-
intron-intron	ENST00000452825	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000452825	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375401	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375401	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000404049	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000404049	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375379	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375379	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375383	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000375383	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000465402	ENST00000252599		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
intron-intron	ENST00000465402	ENST00000601354		ChiTaRS3.1			AI394653	KDM5C	chrX	53221507	+	COLGALT1	chr19	17690738	-
5CDS-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			AB069693	BCR	chr22	23615962	+	ABL1	chr9	133590492	-
5CDS-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			AB069693	BCR	chr22	23615962	+	ABL1	chr9	133590492	-
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			AB069693	BCR	chr22	23615962	+	ABL1	chr9	133590492	-
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			AB069693	BCR	chr22	23615962	+	ABL1	chr9	133590492	-
intron-3UTR	ENST00000431635	ENST00000431635		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-3UTR	ENST00000431635	ENST00000236051		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-intron	ENST00000431635	ENST00000472982		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-3UTR	ENST00000236051	ENST00000431635		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-3UTR	ENST00000236051	ENST00000236051		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-intron	ENST00000236051	ENST00000472982		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-3UTR	ENST00000472982	ENST00000431635		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-3UTR	ENST00000472982	ENST00000236051		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-intron	ENST00000472982	ENST00000472982		ChiTaRS3.1			BE895983	EBNA1BP2	chr1	43630060	+	EBNA1BP2	chr1	43630033	-
intron-intron	ENST00000376929	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000376929	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000376929	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000376929	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000376929	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000376929	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000506690	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000389805	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000402874	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000510187	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000608933		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000295908		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000508256		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000506423		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000315194		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000360718	ENST00000514204		ChiTaRS3.1			BF376523	SQSTM1	chr5	179258273	+	PPM1K	chr4	89194378	-
intron-intron	ENST00000352732	ENST00000352732		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000565973		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000355100		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000352732	ENST00000562254		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000352732		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000565973		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000355100		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000565973	ENST00000562254		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000352732		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000565973		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000355100		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000355100	ENST00000562254		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000352732		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000565973		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000355100		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-intron	ENST00000562254	ENST00000562254		ChiTaRS3.1			AW853203	ABHD2	chr15	89635547	-	ABHD2	chr15	89639176	-
intron-3CDS	ENST00000536255	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000536255	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-3CDS	ENST00000381208	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000381208	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-3CDS	ENST00000381209	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000381209	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-3CDS	ENST00000327154	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000327154	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-3CDS	ENST00000405578	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000405578	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-3CDS	ENST00000574003	ENST00000304636		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000574003	ENST00000317840		ChiTaRS3.1			AI807903	RPAIN	chr17	5336387	+	COL3A1	chr2	189868165	-
intron-intron	ENST00000425759	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000425759	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000292733	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000542773	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000263205	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000406969	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000382974	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000541476	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000396581		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000489892		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000376724		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000307859		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000497688		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000433713		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000436951		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000437563		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000470577		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000552119		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000429471		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000431397		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000475016		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000548672		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000445004		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000425845		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000488232		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000418267		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000383610		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000476094		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000547289		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000400651		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000434151		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000462556		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000549728		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000421981		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000430485		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000456884		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-intron	ENST00000478831	ENST00000486552		ChiTaRS3.1			BF991563	MED15	chr22	20928959	+	TRIM40	chr6	1445438	-
intron-3CDS	ENST00000284984	ENST00000284984		ChiTaRS3.1			AL355723	ADAMTS1	chr21	28209271	-	ADAMTS1	chr21	28213385	-
intron-intron	ENST00000315930	ENST00000380050		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000315930	ENST00000265741		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000315930	ENST00000406263		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000315930	ENST00000436577		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000315930	ENST00000496279		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000305414	ENST00000380050		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000305414	ENST00000265741		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000305414	ENST00000406263		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000305414	ENST00000436577		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000305414	ENST00000496279		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000441825	ENST00000380050		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000441825	ENST00000265741		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000441825	ENST00000406263		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000441825	ENST00000436577		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000441825	ENST00000496279		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000370603	ENST00000380050		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000370603	ENST00000265741		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000370603	ENST00000406263		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000370603	ENST00000436577		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000370603	ENST00000496279		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000541469	ENST00000380050		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000541469	ENST00000265741		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000541469	ENST00000406263		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000541469	ENST00000436577		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
intron-intron	ENST00000541469	ENST00000496279		ChiTaRS3.1			D16473	FGF13	chrX	137823303	-	CDK14	chr7	90681025	+
3UTR-3CDS	ENST00000256858	ENST00000256858		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
3UTR-3CDS	ENST00000256858	ENST00000398130		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
3UTR-intron	ENST00000256858	ENST00000592479		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
3UTR-3CDS	ENST00000398130	ENST00000256858		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
3UTR-3CDS	ENST00000398130	ENST00000398130		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
3UTR-intron	ENST00000398130	ENST00000592479		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
intron-3CDS	ENST00000592479	ENST00000256858		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
intron-3CDS	ENST00000592479	ENST00000398130		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
intron-intron	ENST00000592479	ENST00000592479		ChiTaRS3.1			BU674543	KIAA1468	chr18	59973013	-	KIAA1468	chr18	59972757	+
intron-3UTR	ENST00000380158	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000380158	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000380158	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000380158	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000380158	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000380158	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000380158	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000264572	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000264572	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000264572	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000264572	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000264572	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000264572	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000264572	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-3UTR	ENST00000408927	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-intron	ENST00000408927	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-3UTR	ENST00000408927	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-intron	ENST00000408927	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-3UTR	ENST00000408927	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-3UTR	ENST00000408927	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
3UTR-3UTR	ENST00000408927	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000512857	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000512857	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000512857	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000512857	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000512857	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000512857	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000512857	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000453712	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000453712	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000453712	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000453712	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000453712	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000453712	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000453712	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000339360	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000339360	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000339360	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000339360	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000339360	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000339360	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000339360	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000408900	ENST00000380158		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000408900	ENST00000264572		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000408900	ENST00000408927		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-intron	ENST00000408900	ENST00000512857		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000408900	ENST00000453712		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000408900	ENST00000339360		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-3UTR	ENST00000408900	ENST00000408900		ChiTaRS3.1			CB857283	RAP1GDS1	chr4	99364242	+	RAP1GDS1	chr4	99363300	+
intron-5UTR	ENST00000301887	ENST00000409731		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000301887	ENST00000345517		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000301887	ENST00000409918		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000301887	ENST00000409624		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000435842	ENST00000409731		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000435842	ENST00000345517		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000435842	ENST00000409918		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000435842	ENST00000409624		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000527716	ENST00000409731		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000527716	ENST00000345517		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000527716	ENST00000409918		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-5UTR	ENST00000527716	ENST00000409624		ChiTaRS3.1			BG982943	BATF2	chr11	64764442	+	ACTG2	chr2	74120141	+
intron-3UTR	ENST00000375734	ENST00000375734		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000375734	ENST00000263895		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000375734	ENST00000409557		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-intron	ENST00000375734	ENST00000472416		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000263895	ENST00000375734		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000263895	ENST00000263895		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000263895	ENST00000409557		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-intron	ENST00000263895	ENST00000472416		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000409557	ENST00000375734		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000409557	ENST00000263895		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000409557	ENST00000409557		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-intron	ENST00000409557	ENST00000472416		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000472416	ENST00000375734		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000472416	ENST00000263895		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000472416	ENST00000409557		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-intron	ENST00000472416	ENST00000472416		ChiTaRS3.1			BE695893	RND3	chr2	151324832	+	RND3	chr2	151325531	-
intron-3UTR	ENST00000368020	ENST00000368020		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368020	ENST00000368021		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368020	ENST00000435396		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-intron	ENST00000368020	ENST00000368019		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368021	ENST00000368020		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368021	ENST00000368021		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368021	ENST00000435396		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-intron	ENST00000368021	ENST00000368019		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000435396	ENST00000368020		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000435396	ENST00000368021		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000435396	ENST00000435396		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-intron	ENST00000435396	ENST00000368019		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368019	ENST00000368020		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368019	ENST00000368021		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-3UTR	ENST00000368019	ENST00000435396		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-intron	ENST00000368019	ENST00000368019		ChiTaRS3.1			BQ359663	USF1	chr1	161009359	+	USF1	chr1	161009165	-
intron-intron	ENST00000536985	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000536985	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379789	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000540253	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000317350	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379785	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379782	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000360521	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000536985		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000379789		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000540253		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000317350		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000379785		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000379782		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000360521		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
intron-intron	ENST00000379775	ENST00000379775		ChiTaRS3.1			AW896693	PFKFB3	chr10	6251270	-	PFKFB3	chr10	6251101	+
5UTR-3UTR	ENST00000331825	ENST00000409817		ChiTaRS3.1			CD101873	FTL	chr19	49468728	+	CXCR4	chr2	136871977	-
5UTR-3UTR	ENST00000331825	ENST00000241393		ChiTaRS3.1			CD101873	FTL	chr19	49468728	+	CXCR4	chr2	136871977	-
5UTR-intron	ENST00000331825	ENST00000466288		ChiTaRS3.1			CD101873	FTL	chr19	49468728	+	CXCR4	chr2	136871977	-
intron-intron	ENST00000225964	ENST00000378004		ChiTaRS3.1			BM672053	COL1A1	chr17	48262903	+	ARHGAP26	chr5	142194021	-
intron-intron	ENST00000225964	ENST00000274498		ChiTaRS3.1			BM672053	COL1A1	chr17	48262903	+	ARHGAP26	chr5	142194021	-
intron-intron	ENST00000225964	ENST00000486650		ChiTaRS3.1			BM672053	COL1A1	chr17	48262903	+	ARHGAP26	chr5	142194021	-
intron-3UTR	ENST00000476873	ENST00000476873		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000476873	ENST00000368701		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000476873	ENST00000368702		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000476873	ENST00000344616		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-5UTR	ENST00000476873	ENST00000368700		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368701	ENST00000476873		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368701	ENST00000368701		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368701	ENST00000368702		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368701	ENST00000344616		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-5UTR	ENST00000368701	ENST00000368700		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368702	ENST00000476873		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368702	ENST00000368701		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368702	ENST00000368702		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368702	ENST00000344616		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-5UTR	ENST00000368702	ENST00000368700		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000344616	ENST00000476873		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000344616	ENST00000368701		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000344616	ENST00000368702		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000344616	ENST00000344616		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-5UTR	ENST00000344616	ENST00000368700		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368700	ENST00000476873		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368700	ENST00000368701		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368700	ENST00000368702		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-3UTR	ENST00000368700	ENST00000344616		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-5UTR	ENST00000368700	ENST00000368700		ChiTaRS3.1			AW385213	S100A14	chr1	153586949	-	S100A14	chr1	153587342	+
intron-intron	ENST00000358598	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000358598	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000358598	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000358598	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000358598	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000358598	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000392711	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000589228	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000536854	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000586397	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000358598		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000392711		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000589228		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000536854		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000586397		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000588188	ENST00000588188		ChiTaRS3.1			DB305963	PRKAR1A	chr17	66513094	-	PRKAR1A	chrX	139866742	-
intron-intron	ENST00000170168	ENST00000170168		ChiTaRS3.1			AW842013	REXO1	chr19	1831075	+	REXO1	chr19	1830815	-
intron-5UTR	ENST00000170168	ENST00000587524		ChiTaRS3.1			AW842013	REXO1	chr19	1831075	+	REXO1	chr19	1830815	-
intron-intron	ENST00000587524	ENST00000170168		ChiTaRS3.1			AW842013	REXO1	chr19	1831075	+	REXO1	chr19	1830815	-
intron-5UTR	ENST00000587524	ENST00000587524		ChiTaRS3.1			AW842013	REXO1	chr19	1831075	+	REXO1	chr19	1830815	-
5CDS-intron	ENST00000589786	ENST00000589786		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-3UTR	ENST00000589786	ENST00000284006		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000589786	ENST00000588881		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000589786	ENST00000430256		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000589786	ENST00000592363		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
3UTR-intron	ENST00000284006	ENST00000589786		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
3UTR-3UTR	ENST00000284006	ENST00000284006		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
3UTR-intron	ENST00000284006	ENST00000588881		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
3UTR-intron	ENST00000284006	ENST00000430256		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
3UTR-intron	ENST00000284006	ENST00000592363		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000588881	ENST00000589786		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-3UTR	ENST00000588881	ENST00000284006		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000588881	ENST00000588881		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000588881	ENST00000430256		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000588881	ENST00000592363		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000430256	ENST00000589786		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-3UTR	ENST00000430256	ENST00000284006		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000430256	ENST00000588881		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000430256	ENST00000430256		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
5CDS-intron	ENST00000430256	ENST00000592363		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-intron	ENST00000592363	ENST00000589786		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-3UTR	ENST00000592363	ENST00000284006		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-intron	ENST00000592363	ENST00000588881		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-intron	ENST00000592363	ENST00000430256		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-intron	ENST00000592363	ENST00000592363		ChiTaRS3.1			AA972393	KCTD15	chr19	34303720	-	KCTD15	chr19	34306468	-
intron-intron	ENST00000425427	ENST00000216181		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000425427	ENST00000475726		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000425427	ENST00000401701		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000297107	ENST00000216181		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000297107	ENST00000475726		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000297107	ENST00000401701		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377661	ENST00000216181		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377661	ENST00000475726		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377661	ENST00000401701		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000519544	ENST00000216181		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000519544	ENST00000475726		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000519544	ENST00000401701		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377657	ENST00000216181		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377657	ENST00000475726		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-intron	ENST00000377657	ENST00000401701		ChiTaRS3.1			DA949043	GALNT10	chr5	153778005	-	MYH9	chr22	36707854	-
intron-3CDS	ENST00000533871	ENST00000434513		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000533871	ENST00000361221		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000533871	ENST00000452522		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000533871	ENST00000375415		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000533871	ENST00000375420		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000533871	ENST00000469726		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000533871	ENST00000375408		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000533871	ENST00000167825		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000321016	ENST00000434513		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000321016	ENST00000361221		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000321016	ENST00000452522		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000321016	ENST00000375415		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000321016	ENST00000375420		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000321016	ENST00000469726		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000321016	ENST00000375408		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000321016	ENST00000167825		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000564347	ENST00000434513		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000564347	ENST00000361221		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000564347	ENST00000452522		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000564347	ENST00000375415		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3CDS	ENST00000564347	ENST00000375420		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000564347	ENST00000469726		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000564347	ENST00000375408		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
intron-3UTR	ENST00000564347	ENST00000167825		ChiTaRS3.1			BF921553	IGSF9B	chr11	133816101	+	ARHGEF10L	chr1	17961459	+
Frame-shit	ENST00000380358	ENST00000380358		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000380358	ENST00000358181		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000380358	ENST00000330494		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
5CDS-intron	ENST00000380358	ENST00000570758		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000358181	ENST00000380358		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000358181	ENST00000358181		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000358181	ENST00000330494		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
5CDS-intron	ENST00000358181	ENST00000570758		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000330494	ENST00000380358		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000330494	ENST00000358181		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
Frame-shit	ENST00000330494	ENST00000330494		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
5CDS-intron	ENST00000330494	ENST00000570758		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
intron-3CDS	ENST00000570758	ENST00000380358		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
intron-3CDS	ENST00000570758	ENST00000358181		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
intron-3CDS	ENST00000570758	ENST00000330494		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
intron-intron	ENST00000570758	ENST00000570758		ChiTaRS3.1			BF932643	CHD3	chr17	7796852	-	CHD3	chr17	7797540	-
intron-intron	ENST00000337147	ENST00000337147		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000337147	ENST00000367075		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000337147	ENST00000392177		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000337147	ENST00000476189		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000367075	ENST00000337147		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000367075	ENST00000367075		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000367075	ENST00000392177		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000367075	ENST00000476189		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000392177	ENST00000337147		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000392177	ENST00000367075		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000392177	ENST00000392177		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000392177	ENST00000476189		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000476189	ENST00000337147		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000476189	ENST00000367075		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000476189	ENST00000392177		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
intron-intron	ENST00000476189	ENST00000476189		ChiTaRS3.1			BF916833	EZR	chr6	159210383	-	EZR	chr6	159210318	+
5CDS-intron	ENST00000338008	ENST00000570884		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000338008	ENST00000570495		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000338008	ENST00000563169		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000338008	ENST00000564323		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000338008	ENST00000398253		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000510158	ENST00000570884		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000510158	ENST00000570495		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000510158	ENST00000563169		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000510158	ENST00000564323		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000510158	ENST00000398253		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000505560	ENST00000570884		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000505560	ENST00000570495		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000505560	ENST00000563169		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-intron	ENST00000505560	ENST00000564323		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
5CDS-3UTR	ENST00000505560	ENST00000398253		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-intron	ENST00000512442	ENST00000570884		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-3UTR	ENST00000512442	ENST00000570495		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-intron	ENST00000512442	ENST00000563169		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-intron	ENST00000512442	ENST00000564323		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-3UTR	ENST00000512442	ENST00000398253		ChiTaRS3.1			BQ308783	ZFYVE16	chr5	79734413	-	ZFP90	chr16	68599405	+
intron-intron	ENST00000438763	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000438763	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000438763	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000438763	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000438763	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000438763	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000426644	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000447178	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454286	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000454969	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000438763		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000426644		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000447178		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000454286		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000454969		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-intron	ENST00000456406	ENST00000456406		ChiTaRS3.1			AW403603	HLA-DOB	chr6	4213282	+	HLA-DOB	chr6	4213103	-
intron-5UTR	ENST00000586702	ENST00000586702		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000586702	ENST00000294618		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000586702	ENST00000319867		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000294618	ENST00000586702		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000294618	ENST00000294618		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000294618	ENST00000319867		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000319867	ENST00000586702		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000319867	ENST00000294618		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-5UTR	ENST00000319867	ENST00000319867		ChiTaRS3.1			BF847503	DOCK6	chr19	11322695	+	DOCK6	chr19	11311050	+
intron-intron	ENST00000301785	ENST00000311573		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368340		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000347088		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000361831		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000355499		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000404643		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000407221		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-5UTR	ENST00000301785	ENST00000359205		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000295566		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368330		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000368339		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000535662		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000405763		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000438245		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000301785	ENST00000476093		ChiTaRS3.1			AW247583	HNRNPUL2	chr11	62482596	+	YY1AP1	chr1	155658475	-
intron-intron	ENST00000275262	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000275262	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000275262	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3UTR	ENST00000275262	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000275262	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000275262	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000392127	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000392127	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000392127	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3UTR	ENST00000392127	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000392127	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000392127	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000453779	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000453779	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000453779	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3UTR	ENST00000453779	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000453779	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000453779	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-intron	ENST00000361752	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-intron	ENST00000361752	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-intron	ENST00000361752	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-3UTR	ENST00000361752	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-intron	ENST00000361752	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
3UTR-intron	ENST00000361752	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000361195	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000361195	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000361195	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3UTR	ENST00000361195	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000361195	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000361195	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000424802	ENST00000275262		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000424802	ENST00000392127		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000424802	ENST00000453779		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3UTR	ENST00000424802	ENST00000361752		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000424802	ENST00000361195		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-intron	ENST00000424802	ENST00000424802		ChiTaRS3.1			BF348123	QKI	chr6	163992063	-	QKI	chr6	163992110	+
intron-3CDS	ENST00000440909	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000440909	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000448921	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000448921	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000437397	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000437397	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000355814	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000355814	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000393087	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000393087	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000393088	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000393088	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000404814	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000404814	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000449399	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000449399	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000402629	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000402629	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-3CDS	ENST00000555289	ENST00000374855		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
intron-intron	ENST00000555289	ENST00000468981		ChiTaRS3.1			AI133003	SERPINA1	chr14	94849463	+	ALDOB	chr9	104192056	-
3UTR-3CDS	ENST00000360566	ENST00000361354		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
3UTR-3CDS	ENST00000360566	ENST00000360982		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
3UTR-intron	ENST00000360566	ENST00000478449		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
3UTR-3CDS	ENST00000304567	ENST00000361354		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
3UTR-3CDS	ENST00000304567	ENST00000360982		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
3UTR-intron	ENST00000304567	ENST00000478449		ChiTaRS3.1			AA826373	RRM2	chr2	10271152	-	NCKAP1	chr2	183866687	+
intron-3CDS	ENST00000377707	ENST00000401073		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-3CDS	ENST00000377707	ENST00000373481		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-intron	ENST00000377707	ENST00000294521		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-intron	ENST00000377707	ENST00000373480		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-3CDS	ENST00000377700	ENST00000401073		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-3CDS	ENST00000377700	ENST00000373481		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-intron	ENST00000377700	ENST00000294521		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
intron-intron	ENST00000377700	ENST00000373480		ChiTaRS3.1			AA587333	SHB	chr9	37919603	+	KIAA1522	chr1	33237011	-
3UTR-3UTR	ENST00000519374	ENST00000397195		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-intron	ENST00000519374	ENST00000572915		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-3UTR	ENST00000519374	ENST00000451360		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-3UTR	ENST00000519911	ENST00000397195		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-intron	ENST00000519911	ENST00000572915		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-3UTR	ENST00000519911	ENST00000451360		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-3UTR	ENST00000265093	ENST00000397195		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-intron	ENST00000265093	ENST00000572915		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
3UTR-3UTR	ENST00000265093	ENST00000451360		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
intron-3UTR	ENST00000517669	ENST00000397195		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
intron-intron	ENST00000517669	ENST00000572915		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
intron-3UTR	ENST00000517669	ENST00000451360		ChiTaRS3.1			BF750913	ATP6V0E1	chr5	172461800	+	PAFAH1B1	chr17	2585134	-
intron-3CDS	ENST00000256496	ENST00000353281		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-3CDS	ENST00000256496	ENST00000262407		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-intron	ENST00000256496	ENST00000377068		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-3CDS	ENST00000419534	ENST00000353281		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-3CDS	ENST00000419534	ENST00000262407		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-intron	ENST00000419534	ENST00000377068		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-3CDS	ENST00000468010	ENST00000353281		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-3CDS	ENST00000468010	ENST00000262407		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-intron	ENST00000468010	ENST00000377068		ChiTaRS3.1			J02963	ARL8B	chr3	5171754	-	ITGA2B	chr17	42453552	-
intron-intron	ENST00000349841	ENST00000316999		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000349841	ENST00000370452		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000349841	ENST00000370455		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000349841	ENST00000422334		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000392733	ENST00000316999		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000392733	ENST00000370452		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000392733	ENST00000370455		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000392733	ENST00000422334		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000356716	ENST00000316999		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000356716	ENST00000370452		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000356716	ENST00000370455		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000356716	ENST00000422334		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000544106	ENST00000316999		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000544106	ENST00000370452		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000544106	ENST00000370455		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-intron	ENST00000544106	ENST00000422334		ChiTaRS3.1			CK431053	MYNN	chr3	169495312	+	SMAP1	chr6	71445757	+
intron-5UTR	ENST00000405837	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000405837	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000405837	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000433053	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000433053	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000433053	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000278893	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000278893	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000278893	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000360796	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000360796	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000360796	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000403550	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000403550	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000403550	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000407022	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000407022	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000407022	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000421906	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000421906	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000421906	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000537604	ENST00000405837		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-5UTR	ENST00000537604	ENST00000433053		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000278893		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000360796		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000403550		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000407022		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000421906		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000537604	ENST00000537604		ChiTaRS3.1			BF948113	BSCL2	chr11	62475790	-	BSCL2	chr11	62476680	-
intron-intron	ENST00000373566	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000373566	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000373566	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000373563	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000373563	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000373563	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409480	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409480	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409480	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409547	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409547	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409547	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409196	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409196	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409196	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409451	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409451	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000409451	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000482666	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000482666	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000482666	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000452341	ENST00000297161		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000452341	ENST00000426693		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-intron	ENST00000452341	ENST00000494786		ChiTaRS3.1			AL121233	GIGYF2	chr2	233647671	+	BMPER	chr7	34076890	+
intron-3CDS	ENST00000530124	ENST00000264357		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000530124	ENST00000542149		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000530124	ENST00000371251		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000530124	ENST00000371256		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000530124	ENST00000541091		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000530124	ENST00000371266		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000530124	ENST00000371264		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000530124	ENST00000479118		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000257247	ENST00000264357		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000257247	ENST00000542149		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000257247	ENST00000371251		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000257247	ENST00000371256		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000257247	ENST00000541091		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000257247	ENST00000371266		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000257247	ENST00000371264		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000257247	ENST00000479118		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000525875	ENST00000264357		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000525875	ENST00000542149		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000525875	ENST00000371251		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000525875	ENST00000371256		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000525875	ENST00000541091		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000525875	ENST00000371266		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000525875	ENST00000371264		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000525875	ENST00000479118		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000378024	ENST00000264357		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000378024	ENST00000542149		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000378024	ENST00000371251		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-3CDS	ENST00000378024	ENST00000371256		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000378024	ENST00000541091		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000378024	ENST00000371266		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000378024	ENST00000371264		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000378024	ENST00000479118		ChiTaRS3.1			DB304653	AHNAK	chr11	62283691	+	GRIA3	chrX	122561787	-
intron-intron	ENST00000516892	ENST00000516892		ChiTaRS3.1			BF994603	MEG3	chr14	101295505	+	MEG3	chr14	101295598	-
3UTR-3CDS	ENST00000429989	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000429989	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000481124	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000372164	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372158	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000341863	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-3CDS	ENST00000372156	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000303210		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000436220		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000424361		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000419828		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000427895		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000393926		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
3UTR-3CDS	ENST00000265450	ENST00000393924		ChiTaRS3.1			AW904903	TSPAN14	chr10	82278691	-	GNB2	chr7	100275827	-
intron-intron	ENST00000449833	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449833	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449833	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449833	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409161	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409161	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409161	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409161	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000423696	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000423696	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000423696	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000423696	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000338508	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000338508	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000338508	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000338508	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409530	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409530	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409530	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000409530	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449116	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449116	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449116	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000449116	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000357171	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000357171	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000357171	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000357171	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000468619	ENST00000375370		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000468619	ENST00000538138		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000468619	ENST00000465174		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000468619	ENST00000544902		ChiTaRS3.1			CA976123	SHANK2	chr11	70421912	+	TFDP1	chr13	114240392	+
intron-intron	ENST00000530927	ENST00000564218		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000530927	ENST00000315678		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000380815	ENST00000564218		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000380815	ENST00000315678		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000467288	ENST00000564218		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000467288	ENST00000315678		ChiTaRS3.1			BE830483	GMDS	chr6	1792767	+	ZNF843	chr16	31449918	+
intron-intron	ENST00000408771	ENST00000438423		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000267811		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000452095		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000333725		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000557843		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000560764		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000543579		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000537840		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000343827		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000559710		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000408771	ENST00000559703		ChiTaRS3.1			JF938534	MIR548H3	chr9	78291508	-	TCF12	chr15	57240360	+
intron-intron	ENST00000261600	ENST00000261600		ChiTaRS3.1			BF089063	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000261600	ENST00000582313		ChiTaRS3.1			BF089063	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000582313	ENST00000261600		ChiTaRS3.1			BF089063	THOC1	chr18	214783	+	THOC1	chr18	219061	-
intron-intron	ENST00000582313	ENST00000582313		ChiTaRS3.1			BF089063	THOC1	chr18	214783	+	THOC1	chr18	219061	-
5CDS-intron	ENST00000504825	ENST00000216181		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
5CDS-intron	ENST00000504825	ENST00000475726		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
5CDS-intron	ENST00000504825	ENST00000401701		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
5CDS-intron	ENST00000304915	ENST00000216181		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
5CDS-intron	ENST00000304915	ENST00000475726		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
5CDS-intron	ENST00000304915	ENST00000401701		ChiTaRS3.1			BX486673	SMR3B	chr4	71255517	+	MYH9	chr22	36768443	-
intron-intron	ENST00000434600	ENST00000434600		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000434600	ENST00000538785		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000434600	ENST00000200639		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000434600	ENST00000371335		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000434600	ENST00000540603		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000538785	ENST00000434600		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000538785	ENST00000538785		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000538785	ENST00000200639		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000538785	ENST00000371335		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000538785	ENST00000540603		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000200639	ENST00000434600		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000200639	ENST00000538785		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000200639	ENST00000200639		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000200639	ENST00000371335		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000200639	ENST00000540603		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000371335	ENST00000434600		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000371335	ENST00000538785		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000371335	ENST00000200639		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000371335	ENST00000371335		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000371335	ENST00000540603		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000540603	ENST00000434600		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000540603	ENST00000538785		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000540603	ENST00000200639		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000540603	ENST00000371335		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000540603	ENST00000540603		ChiTaRS3.1			CB241163	LAMP2	chrX	119564969	+	LAMP2	chrX	119565215	-
intron-intron	ENST00000517997	ENST00000378308		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000517997	ENST00000324545		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000457458	ENST00000378308		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000457458	ENST00000324545		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000357227	ENST00000378308		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000357227	ENST00000324545		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000518022	ENST00000378308		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000518022	ENST00000324545		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000276052	ENST00000378308		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
intron-intron	ENST00000276052	ENST00000324545		ChiTaRS3.1			BI019783	CDK16	chrX	47080370	-	USP9X	chrX	40977867	+
5CDS-intron	ENST00000295598	ENST00000348165		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
5CDS-intron	ENST00000295598	ENST00000389103		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
5CDS-intron	ENST00000537345	ENST00000348165		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
5CDS-intron	ENST00000537345	ENST00000389103		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
5CDS-intron	ENST00000369496	ENST00000348165		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
5CDS-intron	ENST00000369496	ENST00000389103		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
intron-intron	ENST00000491156	ENST00000348165		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
intron-intron	ENST00000491156	ENST00000389103		ChiTaRS3.1			BG108633	ATP1A1	chr1	116937900	+	UBE3C	chr7	156985436	+
intron-intron	ENST00000357731	ENST00000435504		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000357731	ENST00000336112		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000357731	ENST00000272341		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000357731	ENST00000404843		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000357731	ENST00000497092		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000306821	ENST00000435504		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000306821	ENST00000336112		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000306821	ENST00000272341		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000306821	ENST00000404843		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000306821	ENST00000497092		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000434200	ENST00000435504		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000434200	ENST00000336112		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000434200	ENST00000272341		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000434200	ENST00000404843		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000434200	ENST00000497092		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000467479	ENST00000435504		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000467479	ENST00000336112		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000467479	ENST00000272341		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000467479	ENST00000404843		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000467479	ENST00000497092		ChiTaRS3.1			BG197293	NEGR1	chr1	72168951	-	ASXL2	chr2	26015802	-
intron-intron	ENST00000370331	ENST00000560626		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000558305		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000567337		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000370331	ENST00000312493		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000560626		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000558305		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000567337		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000540033	ENST00000312493		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000560626		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000558305		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000567337		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000543509	ENST00000312493		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000560626		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000558305		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000567337		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
intron-intron	ENST00000491940	ENST00000312493		ChiTaRS3.1			BE143703	EVI5	chr1	92984775	+	PEAK1	chr15	77521966	-
5CDS-intron	ENST00000587557	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000587557	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592504	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000585352	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000317221	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000586255	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000592896	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000603380	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5UTR-intron	ENST00000538743	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000445937		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000531443		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000517566		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000452423		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000442977		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000521963		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000312046		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000449762		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000297447		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000521592		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
5CDS-intron	ENST00000393883	ENST00000497705		ChiTaRS3.1			BG534933	ZNF559	chr19	9451840	+	OXR1	chr8	107750730	-
3UTR-3UTR	ENST00000486715	ENST00000486715		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-intron	ENST00000486715	ENST00000478576		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-3UTR	ENST00000486715	ENST00000264263		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-intron	ENST00000486715	ENST00000490261		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-3UTR	ENST00000478576	ENST00000486715		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-intron	ENST00000478576	ENST00000478576		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-3UTR	ENST00000478576	ENST00000264263		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-intron	ENST00000478576	ENST00000490261		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-3UTR	ENST00000264263	ENST00000486715		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-intron	ENST00000264263	ENST00000478576		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-3UTR	ENST00000264263	ENST00000264263		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
3UTR-intron	ENST00000264263	ENST00000490261		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-3UTR	ENST00000490261	ENST00000486715		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-intron	ENST00000490261	ENST00000478576		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-3UTR	ENST00000490261	ENST00000264263		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-intron	ENST00000490261	ENST00000490261		ChiTaRS3.1			BE869773	GFM1	chr3	158409840	-	GFM1	chr3	158409879	+
intron-3UTR	ENST00000358691	ENST00000409251		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-3UTR	ENST00000358691	ENST00000295718		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000358691	ENST00000423636		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000358691	ENST00000497977		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-3UTR	ENST00000580168	ENST00000409251		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-3UTR	ENST00000580168	ENST00000295718		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000580168	ENST00000423636		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000580168	ENST00000497977		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-3UTR	ENST00000580662	ENST00000409251		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-3UTR	ENST00000580662	ENST00000295718		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000580662	ENST00000423636		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
intron-intron	ENST00000580662	ENST00000497977		ChiTaRS3.1			BP389573	HELZ	chr17	65149848	+	PTPRN	chr2	220154559	-
5CDS-intron	ENST00000372070	ENST00000216029		ChiTaRS3.1			AW613413	AKR1A1	chr1	46034837	-	CBY1	chr22	39067727	-
5CDS-intron	ENST00000351829	ENST00000216029		ChiTaRS3.1			AW613413	AKR1A1	chr1	46034837	-	CBY1	chr22	39067727	-
intron-intron	ENST00000471651	ENST00000216029		ChiTaRS3.1			AW613413	AKR1A1	chr1	46034837	-	CBY1	chr22	39067727	-
3UTR-intron	ENST00000473038	ENST00000216029		ChiTaRS3.1			AW613413	AKR1A1	chr1	46034837	-	CBY1	chr22	39067727	-
intron-intron	ENST00000487861	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487861	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487861	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487861	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487861	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487861	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000471583	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000487270	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000488612	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000390683	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000487861		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000471583		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000487270		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000488612		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000390683		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-intron	ENST00000469165	ENST00000469165		ChiTaRS3.1			CV375773	RAD51B	chr14	69075881	-	RAD51B	chr14	69075010	+
intron-3CDS	ENST00000205061	ENST00000205061		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000205061	ENST00000422840		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000205061	ENST00000447066		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000422840	ENST00000205061		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000422840	ENST00000422840		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000422840	ENST00000447066		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000447066	ENST00000205061		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000447066	ENST00000422840		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-3CDS	ENST00000447066	ENST00000447066		ChiTaRS3.1			CB122593	GLG1	chr16	74525115	+	GLG1	chr16	74525044	-
intron-5UTR	ENST00000527132	ENST00000527132		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000527132	ENST00000396505		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000527132	ENST00000326932		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000527132	ENST00000525493		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000527132	ENST00000450094		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000396505	ENST00000527132		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000396505	ENST00000396505		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000396505	ENST00000326932		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000396505	ENST00000525493		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000396505	ENST00000450094		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000326932	ENST00000527132		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000326932	ENST00000396505		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000326932	ENST00000326932		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000326932	ENST00000525493		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000326932	ENST00000450094		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000525493	ENST00000527132		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000525493	ENST00000396505		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000525493	ENST00000326932		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000525493	ENST00000525493		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000525493	ENST00000450094		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-5UTR	ENST00000450094	ENST00000527132		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000450094	ENST00000396505		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-3UTR	ENST00000450094	ENST00000326932		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000450094	ENST00000525493		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000450094	ENST00000450094		ChiTaRS3.1			BE812783	DKK3	chr11	11985235	+	DKK3	chr11	11985668	-
intron-intron	ENST00000485752	ENST00000569795		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000485752	ENST00000413097		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000485752	ENST00000260376		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000485752	ENST00000287196		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000295317	ENST00000569795		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000295317	ENST00000413097		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000295317	ENST00000260376		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000295317	ENST00000287196		ChiTaRS3.1			AW391383	RNF149	chr2	101893937	+	PARP6	chr15	72552614	+
intron-intron	ENST00000439174	ENST00000257821		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000323180		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000418153		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000527753		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000257821		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000323180		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000418153		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000527753		ChiTaRS3.1			AI803563	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
Frame-shit	ENST00000434074	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000434074	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000434074	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000312040	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000312040	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000312040	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000451945	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000451945	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000451945	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000529655	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000529655	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000529655	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-3CDS	ENST00000530500	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-3CDS	ENST00000530500	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-intron	ENST00000530500	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000526508	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000526508	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000526508	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000524625	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000524625	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000524625	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000359513	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000359513	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000359513	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000528494	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000528494	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
5CDS-intron	ENST00000528494	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-3CDS	ENST00000526485	ENST00000288670		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-3CDS	ENST00000526485	ENST00000475377		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
intron-intron	ENST00000526485	ENST00000497192		ChiTaRS3.1			BP218693	ATG13	chr11	46665850	+	FMNL2	chr2	153484927	+
Frame-shit	ENST00000370179	ENST00000313899		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000353341		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000543098		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370179	ENST00000352301		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370179	ENST00000508119		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370179	ENST00000541060		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000313899		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000353341		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000543098		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
Frame-shit	ENST00000370177	ENST00000352301		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370177	ENST00000508119		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
5CDS-5UTR	ENST00000370177	ENST00000541060		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000313899		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000353341		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000543098		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-3CDS	ENST00000473620	ENST00000352301		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-5UTR	ENST00000473620	ENST00000508119		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
3UTR-5UTR	ENST00000473620	ENST00000541060		ChiTaRS3.1			BF805263	PPDPF	chr20	62152884	-	HNRNPD	chr4	83278003	+
intron-intron	ENST00000409790	ENST00000441750		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000409790	ENST00000281513		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000409552	ENST00000441750		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000409552	ENST00000281513		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000465491	ENST00000441750		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000465491	ENST00000281513		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000381822	ENST00000441750		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-intron	ENST00000381822	ENST00000281513		ChiTaRS3.1			BQ380493	CLEC16A	chr16	11102571	+	NBAS	chr2	15315355	+
intron-3UTR	ENST00000397239	ENST00000397239		ChiTaRS3.1			BM466063	DEK	chr6	18225161	-	DEK	chr6	18225235	+
intron-intron	ENST00000397239	ENST00000244776		ChiTaRS3.1			BM466063	DEK	chr6	18225161	-	DEK	chr6	18225235	+
intron-3UTR	ENST00000244776	ENST00000397239		ChiTaRS3.1			BM466063	DEK	chr6	18225161	-	DEK	chr6	18225235	+
intron-intron	ENST00000244776	ENST00000244776		ChiTaRS3.1			BM466063	DEK	chr6	18225161	-	DEK	chr6	18225235	+
5CDS-3UTR	ENST00000310955	ENST00000269554		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
5CDS-intron	ENST00000310955	ENST00000311500		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
5CDS-3UTR	ENST00000372462	ENST00000269554		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
5CDS-intron	ENST00000372462	ENST00000311500		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
intron-3UTR	ENST00000478882	ENST00000269554		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
intron-intron	ENST00000478882	ENST00000311500		ChiTaRS3.1			BP428483	CDC20	chr1	43828782	+	PIP4K2B	chr17	36922526	-
intron-intron	ENST00000420986	ENST00000420986		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000420986	ENST00000532163		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000420986	ENST00000280352		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-intron	ENST00000420986	ENST00000530104		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000420986	ENST00000393047		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000532163	ENST00000420986		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000532163	ENST00000532163		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000532163	ENST00000280352		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000532163	ENST00000530104		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000532163	ENST00000393047		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000280352	ENST00000420986		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000280352	ENST00000532163		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000280352	ENST00000280352		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000280352	ENST00000530104		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000280352	ENST00000393047		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-intron	ENST00000530104	ENST00000420986		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000530104	ENST00000532163		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000530104	ENST00000280352		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-intron	ENST00000530104	ENST00000530104		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000530104	ENST00000393047		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000393047	ENST00000420986		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000393047	ENST00000532163		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000393047	ENST00000280352		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-intron	ENST00000393047	ENST00000530104		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
3UTR-3UTR	ENST00000393047	ENST00000393047		ChiTaRS3.1			AI357473	C11orf57	chr11	111955664	+	C11orf57	chr11	111955828	-
intron-3UTR	ENST00000379958	ENST00000370238		ChiTaRS3.1			AI133413	SAMD9	chr7	92730629	+	GCLM	chr1	94354110	-
intron-intron	ENST00000379958	ENST00000467772		ChiTaRS3.1			AI133413	SAMD9	chr7	92730629	+	GCLM	chr1	94354110	-
intron-3UTR	ENST00000308027	ENST00000216039		ChiTaRS3.1			BX538323	SLC16A13	chr17	6940383	+	JOSD1	chr22	39083072	-
intron-intron	ENST00000308027	ENST00000462610		ChiTaRS3.1			BX538323	SLC16A13	chr17	6940383	+	JOSD1	chr22	39083072	-
intron-3CDS	ENST00000545391	ENST00000545391		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000545391	ENST00000361171		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000545391	ENST00000436593		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000545391	ENST00000535766		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-intron	ENST00000545391	ENST00000485886		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000361171	ENST00000545391		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000361171	ENST00000361171		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000361171	ENST00000436593		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000361171	ENST00000535766		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
5CDS-intron	ENST00000361171	ENST00000485886		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000436593	ENST00000545391		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000436593	ENST00000361171		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000436593	ENST00000436593		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
In-frame	ENST00000436593	ENST00000535766		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
5CDS-intron	ENST00000436593	ENST00000485886		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000535766	ENST00000545391		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000535766	ENST00000361171		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000535766	ENST00000436593		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000535766	ENST00000535766		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-intron	ENST00000535766	ENST00000485886		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000485886	ENST00000545391		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000485886	ENST00000361171		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000485886	ENST00000436593		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-3CDS	ENST00000485886	ENST00000535766		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
intron-intron	ENST00000485886	ENST00000485886		ChiTaRS3.1			BF817083	MVB12B	chr9	129184227	+	MVB12B	chr9	129154341	+
5CDS-3UTR	ENST00000319296	ENST00000259006		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000319296	ENST00000578402		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000319296	ENST00000583211		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000319296	ENST00000578061		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000319296	ENST00000578993		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000319296	ENST00000582055		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-3UTR	ENST00000434417	ENST00000259006		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000434417	ENST00000578402		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000434417	ENST00000583211		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000434417	ENST00000578061		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000434417	ENST00000578993		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000434417	ENST00000582055		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-3UTR	ENST00000566625	ENST00000259006		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000566625	ENST00000578402		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000566625	ENST00000583211		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000566625	ENST00000578061		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000566625	ENST00000578993		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000566625	ENST00000582055		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-3UTR	ENST00000564550	ENST00000259006		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000564550	ENST00000578402		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000564550	ENST00000583211		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000564550	ENST00000578061		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000564550	ENST00000578993		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
5CDS-intron	ENST00000564550	ENST00000582055		ChiTaRS3.1			BF510983	ZNF771	chr16	30419456	-	LIMD2	chr17	61774655	-
3UTR-3UTR	ENST00000295092	ENST00000295092		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
3UTR-intron	ENST00000295092	ENST00000331243		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
3UTR-intron	ENST00000295092	ENST00000497769		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
3UTR-3UTR	ENST00000331243	ENST00000295092		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
3UTR-intron	ENST00000331243	ENST00000331243		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
3UTR-intron	ENST00000331243	ENST00000497769		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
intron-3UTR	ENST00000497769	ENST00000295092		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
intron-intron	ENST00000497769	ENST00000331243		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
intron-intron	ENST00000497769	ENST00000497769		ChiTaRS3.1			AK025063	FAM84A	chr2	14776709	-	FAM84A	chr2	14778087	+
intron-3CDS	ENST00000378330	ENST00000529639		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000378330	ENST00000531743		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000378330	ENST00000525297		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000378330	ENST00000527548		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000378330	ENST00000279259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3UTR	ENST00000378330	ENST00000529259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-intron	ENST00000378330	ENST00000434372		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000301030	ENST00000529639		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000301030	ENST00000531743		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000301030	ENST00000525297		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000301030	ENST00000527548		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000301030	ENST00000279259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3UTR	ENST00000301030	ENST00000529259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-intron	ENST00000301030	ENST00000434372		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000563291	ENST00000529639		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000563291	ENST00000531743		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000563291	ENST00000525297		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000563291	ENST00000527548		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000563291	ENST00000279259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3UTR	ENST00000563291	ENST00000529259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-intron	ENST00000563291	ENST00000434372		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000567736	ENST00000529639		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000567736	ENST00000531743		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000567736	ENST00000525297		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000567736	ENST00000527548		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3CDS	ENST00000567736	ENST00000279259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3UTR	ENST00000567736	ENST00000529259		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-intron	ENST00000567736	ENST00000434372		ChiTaRS3.1			CN275873	ANKRD11	chr16	89348352	-	FAU	chr11	64888275	-
intron-3UTR	ENST00000483017	ENST00000380542		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
intron-intron	ENST00000483017	ENST00000469089		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
intron-intron	ENST00000483017	ENST00000526115		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-3UTR	ENST00000329146	ENST00000380542		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-intron	ENST00000329146	ENST00000469089		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-intron	ENST00000329146	ENST00000526115		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-3UTR	ENST00000548989	ENST00000380542		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-intron	ENST00000548989	ENST00000469089		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
3UTR-intron	ENST00000548989	ENST00000526115		ChiTaRS3.1			AI766823	CRIP2	chr14	105946309	-	NAP1L4	chr11	2965850	-
intron-intron	ENST00000233099	ENST00000378814		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000259711		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000378843		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000378826		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000378816		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000502704		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000233099	ENST00000503342		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000378814		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000259711		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000378843		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000378826		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000378816		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000502704		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000354531	ENST00000503342		ChiTaRS3.1			AW993933	HEATR5B	chr2	37244584	+	KIF13A	chr6	17888794	+
intron-intron	ENST00000356495	ENST00000358781		ChiTaRS3.1			CD723373	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-intron	ENST00000487208	ENST00000358781		ChiTaRS3.1			CD723373	PIGR	chr1	207101910	+	FAM3D	chr3	58643475	-
intron-intron	ENST00000359087	ENST00000350026		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000359087	ENST00000346085		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000359087	ENST00000367148		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000359087	ENST00000275248		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000359087	ENST00000478761		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000290810	ENST00000350026		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000290810	ENST00000346085		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000290810	ENST00000367148		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000290810	ENST00000275248		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000290810	ENST00000478761		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000379463	ENST00000350026		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000379463	ENST00000346085		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000379463	ENST00000367148		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000379463	ENST00000275248		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000379463	ENST00000478761		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000394074	ENST00000350026		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000394074	ENST00000346085		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000394074	ENST00000367148		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000394074	ENST00000275248		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000394074	ENST00000478761		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000564040	ENST00000350026		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000564040	ENST00000346085		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000564040	ENST00000367148		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000564040	ENST00000275248		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-intron	ENST00000564040	ENST00000478761		ChiTaRS3.1			BG003563	NAE1	chr16	66852506	-	ARID1B	chr6	157239129	-
intron-3CDS	ENST00000230538	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000230538	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000230538	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000230538	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000230538	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000230538	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000522006	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000522006	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000522006	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000522006	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000522006	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000522006	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000389463	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000389463	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000389463	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000389463	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000389463	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000389463	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000424408	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000424408	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000424408	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000424408	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000424408	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000424408	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000524032	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000524032	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000524032	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000524032	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000524032	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000524032	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000431543	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000431543	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000431543	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000431543	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000431543	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000431543	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000368638	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000368638	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000368638	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000368638	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000368638	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000368638	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000453937	ENST00000299421		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000453937	ENST00000537806		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000453937	ENST00000420936		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000453937	ENST00000528995		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000453937	ENST00000396751		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-intron	ENST00000453937	ENST00000526711		ChiTaRS3.1			BG985223	LAMA4	chr6	112509495	+	ILK	chr11	6630013	-
intron-3CDS	ENST00000540320	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000540320	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000400445	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000400445	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000310336	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000310336	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000379939	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000379939	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000537702	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000537702	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000379922	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000379922	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-3CDS	ENST00000461581	ENST00000259569		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
intron-5UTR	ENST00000461581	ENST00000485372		ChiTaRS3.1			BU686613	NBEA	chr13	35827247	-	RANBP6	chr9	6013844	+
5CDS-intron	ENST00000392519	ENST00000378743		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000392519	ENST00000548100		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000392519	ENST00000552037		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000392519	ENST00000549407		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
intron-intron	ENST00000552019	ENST00000378743		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
intron-intron	ENST00000552019	ENST00000548100		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
intron-intron	ENST00000552019	ENST00000552037		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
intron-intron	ENST00000552019	ENST00000549407		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000431372	ENST00000378743		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000431372	ENST00000548100		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000431372	ENST00000552037		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
5CDS-intron	ENST00000431372	ENST00000549407		ChiTaRS3.1			AA923783	TMEM121	chr14	105995513	-	ZFC3H1	chr12	72033788	-
intron-5UTR	ENST00000340149	ENST00000458477		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000340149	ENST00000228307		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000340149	ENST00000424649		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000340149	ENST00000397506		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000340149	ENST00000536957		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000340149	ENST00000267257		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000340149	ENST00000538144		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000361507	ENST00000458477		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000361507	ENST00000228307		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000361507	ENST00000424649		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000361507	ENST00000397506		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000361507	ENST00000536957		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000361507	ENST00000267257		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000361507	ENST00000538144		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000526030	ENST00000458477		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000526030	ENST00000228307		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000526030	ENST00000424649		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000526030	ENST00000397506		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000526030	ENST00000536957		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-intron	ENST00000526030	ENST00000267257		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
intron-5UTR	ENST00000526030	ENST00000538144		ChiTaRS3.1			BF911013	GAB2	chr11	77930196	+	PXN	chr12	120662018	+
Frame-shit	ENST00000356708	ENST00000356708		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000356708	ENST00000493053		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000356708	ENST00000541227		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000356708	ENST00000335698		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
3UTR-3CDS	ENST00000493053	ENST00000356708		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
3UTR-3UTR	ENST00000493053	ENST00000493053		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
3UTR-3UTR	ENST00000493053	ENST00000541227		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
3UTR-3UTR	ENST00000493053	ENST00000335698		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5UTR-3CDS	ENST00000541227	ENST00000356708		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5UTR-3UTR	ENST00000541227	ENST00000493053		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5UTR-3UTR	ENST00000541227	ENST00000541227		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5UTR-3UTR	ENST00000541227	ENST00000335698		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
Frame-shit	ENST00000335698	ENST00000356708		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000335698	ENST00000493053		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000335698	ENST00000541227		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
5CDS-3UTR	ENST00000335698	ENST00000335698		ChiTaRS3.1			AI750543	ATP5C1	chr10	7830174	-	ATP5C1	chr10	7839096	+
intron-3CDS	ENST00000329957	ENST00000531188		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000530164		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000278572		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000534440		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000527446		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000526608		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000329957	ENST00000524851		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-intron	ENST00000329957	ENST00000529285		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000531188		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000530164		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000278572		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000534440		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000527446		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000526608		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000526462	ENST00000524851		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-intron	ENST00000526462	ENST00000529285		ChiTaRS3.1			BC017103	MOB2	chr11	1577324	+	RPS3	chr11	75110600	+
intron-3CDS	ENST00000392514	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000392514	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000392514	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000392514	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000392514	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000551150	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000551150	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000551150	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000551150	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000551150	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000552292	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000552292	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000552292	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000552292	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000552292	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000313104	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000313104	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000313104	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000313104	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000313104	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000546989	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000546989	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000546989	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000546989	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000546989	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000228306	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000228306	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000228306	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000228306	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000228306	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000550296	ENST00000507754		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000550296	ENST00000252576		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000550296	ENST00000503283		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000550296	ENST00000512771		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000550296	ENST00000428459		ChiTaRS3.1			AF132973	RPLP0	chr12	120635175	+	NDUFA13	chr19	19627052	+
intron-3CDS	ENST00000440491	ENST00000456435		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000440491	ENST00000318967		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000440491	ENST00000435409		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000440491	ENST00000512605		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3UTR	ENST00000440491	ENST00000476843		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000338347	ENST00000456435		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000338347	ENST00000318967		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000338347	ENST00000435409		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000338347	ENST00000512605		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3UTR	ENST00000338347	ENST00000476843		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000468645	ENST00000456435		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000468645	ENST00000318967		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000468645	ENST00000435409		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000468645	ENST00000512605		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3UTR	ENST00000468645	ENST00000476843		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000281815	ENST00000456435		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000281815	ENST00000318967		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000281815	ENST00000435409		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3CDS	ENST00000281815	ENST00000512605		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-3UTR	ENST00000281815	ENST00000476843		ChiTaRS3.1			BQ353113	NBPF9	chr1	144591787	+	INTS3	chr1	153740219	-
intron-intron	ENST00000288607	ENST00000353317		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000288607	ENST00000315962		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000288607	ENST00000276573		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000288607	ENST00000350034		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000404674	ENST00000353317		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000404674	ENST00000315962		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000404674	ENST00000276573		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000404674	ENST00000350034		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000252329	ENST00000353317		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000252329	ENST00000315962		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000252329	ENST00000276573		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-intron	ENST00000252329	ENST00000350034		ChiTaRS3.1			DB325313	PSMG3	chr7	1607218	+	TRIM55	chr8	67084649	-
intron-3UTR	ENST00000303077	ENST00000356093		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000398863		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000343067		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000349460		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000373800		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000347529		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000373798		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-intron	ENST00000303077	ENST00000373797		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3UTR	ENST00000303077	ENST00000460378		ChiTaRS3.1			BE764633	SIX2	chr2	45233134	-	EPB41	chr1	29443363	-
intron-3CDS	ENST00000418543	ENST00000210060		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-3CDS	ENST00000418543	ENST00000351660		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-3CDS	ENST00000418543	ENST00000594424		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-5UTR	ENST00000418543	ENST00000599481		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-3CDS	ENST00000242796	ENST00000210060		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-3CDS	ENST00000242796	ENST00000351660		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-3CDS	ENST00000242796	ENST00000594424		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
intron-5UTR	ENST00000242796	ENST00000599481		ChiTaRS3.1			BQ436553	WDR83	chr19	12786856	+	DHPS	chr19	12791093	-
In-frame	ENST00000457580	ENST00000229239		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000457580	ENST00000396856		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000457580	ENST00000396861		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000457580	ENST00000396859		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000457580	ENST00000396858		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000388793	ENST00000229239		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000388793	ENST00000396856		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000388793	ENST00000396861		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000388793	ENST00000396859		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000388793	ENST00000396858		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000432932	ENST00000229239		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000432932	ENST00000396856		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000432932	ENST00000396861		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000432932	ENST00000396859		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000432932	ENST00000396858		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000347433	ENST00000229239		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000347433	ENST00000396856		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
In-frame	ENST00000347433	ENST00000396861		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000347433	ENST00000396859		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
Frame-shit	ENST00000347433	ENST00000396858		ChiTaRS3.1			BF820683	SRRT	chr7	100484540	+	GAPDH	chr12	6647322	+
intron-intron	ENST00000052754	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000052754	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000052754	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000052754	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000052754	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000425043	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000425043	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000425043	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000425043	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000425043	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000393155	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000393155	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000393155	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000393155	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000393155	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000228329	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000228329	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000228329	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000228329	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000228329	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000303320	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000303320	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000303320	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000303320	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000303320	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000552962	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000552962	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000552962	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000552962	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000552962	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000441303	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000441303	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000441303	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000441303	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000441303	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000420120	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000420120	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000420120	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000420120	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000420120	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000547568	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000547568	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000547568	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000547568	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000547568	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000456569	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000456569	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000456569	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000456569	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000456569	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546370	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546370	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546370	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546370	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546370	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546745	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546745	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546745	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546745	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000546745	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000550099	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000550099	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000550099	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000550099	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000550099	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000551354	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000551354	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000551354	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000551354	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000551354	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000548768	ENST00000330909		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000548768	ENST00000402939		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000548768	ENST00000483466		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000548768	ENST00000497477		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
intron-intron	ENST00000548768	ENST00000470990		ChiTaRS3.1			AA736813	DCN	chr12	91571449	-	MAGI1	chr3	65352758	+
3UTR-3CDS	ENST00000286186	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
3UTR-intron	ENST00000286186	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
3UTR-3CDS	ENST00000360132	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
3UTR-intron	ENST00000360132	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3CDS	ENST00000272879	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-intron	ENST00000272879	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3CDS	ENST00000374650	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-intron	ENST00000374650	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
3UTR-3CDS	ENST00000346817	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
3UTR-intron	ENST00000346817	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3CDS	ENST00000313728	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-intron	ENST00000313728	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3CDS	ENST00000448480	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-intron	ENST00000448480	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3CDS	ENST00000492363	ENST00000254508		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-intron	ENST00000492363	ENST00000485755		ChiTaRS3.1			BI047863	CASP10	chr2	202083038	+	NUP210	chr3	13372002	+
intron-3UTR	ENST00000380672	ENST00000379672		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380672	ENST00000340825		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380672	ENST00000262444		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380672	ENST00000578087		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380667	ENST00000379672		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380667	ENST00000340825		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380667	ENST00000262444		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380667	ENST00000578087		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000545497	ENST00000379672		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000545497	ENST00000340825		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000545497	ENST00000262444		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000545497	ENST00000578087		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380666	ENST00000379672		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000380666	ENST00000340825		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380666	ENST00000262444		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000380666	ENST00000578087		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000471301	ENST00000379672		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3UTR	ENST00000471301	ENST00000340825		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000471301	ENST00000262444		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-intron	ENST00000471301	ENST00000578087		ChiTaRS3.1			BF846733	BNC2	chr9	16410473	+	ARHGAP44	chr17	12893998	+
intron-3CDS	ENST00000390237	ENST00000338205		ChiTaRS3.1			DB348193	IGKC	chr2	89156787	+	KIAA0368	chr9	114133049	+
intron-3CDS	ENST00000390237	ENST00000259335		ChiTaRS3.1			DB348193	IGKC	chr2	89156787	+	KIAA0368	chr9	114133049	+
intron-3CDS	ENST00000390237	ENST00000374378		ChiTaRS3.1			DB348193	IGKC	chr2	89156787	+	KIAA0368	chr9	114133049	+
intron-intron	ENST00000390237	ENST00000465499		ChiTaRS3.1			DB348193	IGKC	chr2	89156787	+	KIAA0368	chr9	114133049	+
intron-3UTR	ENST00000244769	ENST00000362042		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000244769	ENST00000585291		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000244769	ENST00000357480		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000244769	ENST00000361665		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000244769	ENST00000579481		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000244769	ENST00000582155		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000244769	ENST00000583378		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000244769	ENST00000536222		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000436367	ENST00000362042		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000436367	ENST00000585291		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000436367	ENST00000357480		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000436367	ENST00000361665		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000436367	ENST00000579481		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000436367	ENST00000582155		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000436367	ENST00000583378		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000436367	ENST00000536222		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000467008	ENST00000362042		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000467008	ENST00000585291		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000467008	ENST00000357480		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-3UTR	ENST00000467008	ENST00000361665		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000467008	ENST00000579481		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000467008	ENST00000582155		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000467008	ENST00000583378		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000467008	ENST00000536222		ChiTaRS3.1			BE708163	ATXN1	chr6	16733384	-	NFE2L1	chr17	46138153	-
intron-intron	ENST00000315677	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000581527	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000400147	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000400149	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000400155	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000400150	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000584874	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000534970	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000539435	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000581699	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000400145	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000515196	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000478161	ENST00000182527		ChiTaRS3.1			BF362333	DLGAP1	chr18	3804620	-	TRAM2	chr6	52430465	+
intron-intron	ENST00000504734	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000504734	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000504734	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000504734	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000504734	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000504734	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000415618	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000415618	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000415618	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000415618	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000415618	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000415618	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000452673	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000452673	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-3UTR	ENST00000452673	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-3UTR	ENST00000452673	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000452673	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000452673	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000247461	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000247461	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-3UTR	ENST00000247461	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-3UTR	ENST00000247461	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000247461	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
3UTR-intron	ENST00000247461	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000512607	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000512607	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000512607	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000512607	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000512607	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000512607	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000503126	ENST00000504734		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000503126	ENST00000415618		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000503126	ENST00000452673		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-3UTR	ENST00000503126	ENST00000247461		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000503126	ENST00000512607		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000503126	ENST00000503126		ChiTaRS3.1			AW469973	CANX	chr5	179157203	-	CANX	chr5	179157020	+
intron-intron	ENST00000343289	ENST00000343289		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000343289	ENST00000404739		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000343289	ENST00000369857		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000343289	ENST00000423468		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000343289	ENST00000470299		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000404739	ENST00000343289		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000404739	ENST00000404739		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000404739	ENST00000369857		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000404739	ENST00000423468		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000404739	ENST00000470299		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000369857	ENST00000343289		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000369857	ENST00000404739		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000369857	ENST00000369857		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000369857	ENST00000423468		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000369857	ENST00000470299		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000423468	ENST00000343289		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000423468	ENST00000404739		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000423468	ENST00000369857		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000423468	ENST00000423468		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000423468	ENST00000470299		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000470299	ENST00000343289		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000470299	ENST00000404739		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000470299	ENST00000369857		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000470299	ENST00000423468		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-intron	ENST00000470299	ENST00000470299		ChiTaRS3.1			BE178183	NT5C2	chr10	104878246	-	NT5C2	chr10	104879765	-
intron-3UTR	ENST00000394287	ENST00000372844		ChiTaRS3.1			H21133	MED1	chr17	37565572	-	HPCAL4	chr1	40144881	-
intron-3UTR	ENST00000300651	ENST00000372844		ChiTaRS3.1			H21133	MED1	chr17	37565572	-	HPCAL4	chr1	40144881	-
3UTR-3CDS	ENST00000447654	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000447654	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000447654	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000401473	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000401473	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000311487	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000311487	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000347617	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000347617	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
Frame-shit	ENST00000395004	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
5CDS-intron	ENST00000395004	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-3CDS	ENST00000478214	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-intron	ENST00000478214	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000536378		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000231790		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000458205		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000539477		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000455445		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-3CDS	ENST00000374116	ENST00000435176		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
3UTR-intron	ENST00000374116	ENST00000492474		ChiTaRS3.1			BC005833	HMGA1	chr6	34213057	+	MLH1	chr3	37067174	+
intron-intron	ENST00000357393	ENST00000554335		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000357393	ENST00000251091		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000357393	ENST00000555112		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000357393	ENST00000392067		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000357393	ENST00000357634		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000357393	ENST00000555192		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000370001	ENST00000554335		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000370001	ENST00000251091		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000370001	ENST00000555112		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000370001	ENST00000392067		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000370001	ENST00000357634		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000370001	ENST00000555192		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000477908	ENST00000554335		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000477908	ENST00000251091		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000477908	ENST00000555112		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000477908	ENST00000392067		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000477908	ENST00000357634		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000477908	ENST00000555192		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369994	ENST00000554335		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369994	ENST00000251091		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369994	ENST00000555112		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369994	ENST00000392067		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369994	ENST00000357634		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369994	ENST00000555192		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369995	ENST00000554335		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369995	ENST00000251091		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369995	ENST00000555112		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369995	ENST00000392067		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000369995	ENST00000357634		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-intron	ENST00000369995	ENST00000555192		ChiTaRS3.1			BE766583	AKNAD1	chr1	109503824	+	SAMD4A	chr14	55257212	+
intron-3UTR	ENST00000355360	ENST00000538010		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000355360	ENST00000261822		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000329291	ENST00000538010		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000329291	ENST00000261822		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000539153	ENST00000538010		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000539153	ENST00000261822		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000462488	ENST00000538010		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3UTR	ENST00000462488	ENST00000261822		ChiTaRS3.1			AA897523	PGBD2	chr1	249207777	+	BCL7A	chr12	122497458	-
intron-3CDS	ENST00000233813	ENST00000398344		ChiTaRS3.1			CB856413	IGFBP5	chr2	217539611	-	DDT	chr22	24315983	-
intron-3CDS	ENST00000233813	ENST00000350608		ChiTaRS3.1			CB856413	IGFBP5	chr2	217539611	-	DDT	chr22	24315983	-
intron-3CDS	ENST00000233813	ENST00000404092		ChiTaRS3.1			CB856413	IGFBP5	chr2	217539611	-	DDT	chr22	24315983	-
intron-3CDS	ENST00000233813	ENST00000403754		ChiTaRS3.1			CB856413	IGFBP5	chr2	217539611	-	DDT	chr22	24315983	-
intron-3CDS	ENST00000233813	ENST00000430101		ChiTaRS3.1			CB856413	IGFBP5	chr2	217539611	-	DDT	chr22	24315983	-
intron-intron	ENST00000408742	ENST00000416426		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000408742	ENST00000284073		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000408742	ENST00000322684		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000408742	ENST00000442934		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000408742	ENST00000579180		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000408742	ENST00000579505		ChiTaRS3.1			BG980033	MIR548N	chr2	179472559	-	MSI2	chr17	55738816	+
intron-intron	ENST00000452201	ENST00000452201		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000452201	ENST00000398417		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000452201	ENST00000342988		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-intron	ENST00000452201	ENST00000588745		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000452201	ENST00000586253		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000398417	ENST00000452201		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000398417	ENST00000398417		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000398417	ENST00000342988		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000398417	ENST00000588745		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000398417	ENST00000586253		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000342988	ENST00000452201		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000342988	ENST00000398417		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000342988	ENST00000342988		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000342988	ENST00000588745		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000342988	ENST00000586253		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-intron	ENST00000588745	ENST00000452201		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000588745	ENST00000398417		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000588745	ENST00000342988		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-intron	ENST00000588745	ENST00000588745		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
intron-3UTR	ENST00000588745	ENST00000586253		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000586253	ENST00000452201		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000586253	ENST00000398417		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000586253	ENST00000342988		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-intron	ENST00000586253	ENST00000588745		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000586253	ENST00000586253		ChiTaRS3.1			AL043883	SMAD4	chr18	48605133	-	SMAD4	chr18	48605212	+
3UTR-3UTR	ENST00000379987	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000379987	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000379987	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000379987	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-3UTR	ENST00000379987	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000379987	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000379987	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000453617	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000453617	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000453617	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000453617	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000453617	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000453617	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000453617	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000427316	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000427316	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000427316	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000427316	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000427316	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000427316	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000427316	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000514622	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000514622	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000514622	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000514622	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000514622	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000514622	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000514622	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-3UTR	ENST00000305572	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000305572	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000305572	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000305572	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-3UTR	ENST00000305572	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000305572	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
3UTR-intron	ENST00000305572	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000506666	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000506666	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000506666	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000506666	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000506666	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000506666	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000506666	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000513430	ENST00000379987		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000513430	ENST00000453617		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000513430	ENST00000427316		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000513430	ENST00000514622		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3UTR	ENST00000513430	ENST00000305572		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000513430	ENST00000506666		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-intron	ENST00000513430	ENST00000513430		ChiTaRS3.1			N71523	NPNT	chr4	106892541	-	NPNT	chr4	106892564	+
intron-3CDS	ENST00000359470	ENST00000359470		ChiTaRS3.1			BF846533	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000359470	ENST00000461135		ChiTaRS3.1			BF846533	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000461135	ENST00000359470		ChiTaRS3.1			BF846533	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
intron-3CDS	ENST00000461135	ENST00000461135		ChiTaRS3.1			BF846533	C1orf116	chr1	207195908	-	C1orf116	chr1	207196126	+
5CDS-intron	ENST00000394907	ENST00000538941		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000394907	ENST00000563290		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000394907	ENST00000324767		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000394907	ENST00000562890		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000535975	ENST00000538941		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000535975	ENST00000563290		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000535975	ENST00000324767		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
5CDS-intron	ENST00000535975	ENST00000562890		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000305435	ENST00000538941		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000305435	ENST00000563290		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000305435	ENST00000324767		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000305435	ENST00000562890		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000563582	ENST00000538941		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000563582	ENST00000563290		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000563582	ENST00000324767		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-intron	ENST00000563582	ENST00000562890		ChiTaRS3.1			BM756023	NRG4	chr15	76254167	-	SCAPER	chr15	76673965	-
intron-3CDS	ENST00000328252	ENST00000435275		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000328252	ENST00000440692		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000328252	ENST00000372360		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000328252	ENST00000476545		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000328252	ENST00000360830		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000534838	ENST00000435275		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000534838	ENST00000440692		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000534838	ENST00000372360		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000534838	ENST00000476545		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000534838	ENST00000360830		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000483254	ENST00000435275		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000483254	ENST00000440692		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3CDS	ENST00000483254	ENST00000372360		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000483254	ENST00000476545		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000483254	ENST00000360830		ChiTaRS3.1			BG621223	PAPPA	chr9	119140236	+	RPS24	chr10	79797017	+
intron-3UTR	ENST00000360458	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000360458	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000422154	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000422154	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000451301	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000451301	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000433176	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000433176	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000423833	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000423833	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000441076	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000441076	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000492116	ENST00000256759		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-3UTR	ENST00000492116	ENST00000396947		ChiTaRS3.1			BQ356473	MORF4L2	chrX	102935504	+	FST	chr5	52782130	-
intron-intron	ENST00000607545	ENST00000383737		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000395734		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000426837		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000360240		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000439356		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000264724		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000420772		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000441748		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000462206		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
intron-intron	ENST00000607545	ENST00000434267		ChiTaRS3.1			BF740993	GUSBP1	chr5	21346603	-	MAP4	chr3	47952887	-
In-frame	ENST00000403295	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000403295	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000403295	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403295	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403295	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403295	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000402135	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000402135	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000402135	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000402135	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000402135	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000402135	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000233741	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000233741	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000233741	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000233741	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000233741	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000233741	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000403676	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000403676	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
In-frame	ENST00000403676	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403676	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403676	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
5CDS-intron	ENST00000403676	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000540646	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000540646	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000540646	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000540646	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000540646	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000540646	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000481670	ENST00000403295		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000481670	ENST00000402135		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000481670	ENST00000233741		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000481670	ENST00000403676		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000481670	ENST00000540646		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-intron	ENST00000481670	ENST00000481670		ChiTaRS3.1			BE694283	FANCL	chr2	58425728	-	FANCL	chr2	58459250	-
intron-3CDS	ENST00000318789	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000475937	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000493089	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000484350	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000318779	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000491238	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000498215	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000468577	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-3CDS	ENST00000472382	ENST00000372134		ChiTaRS3.1			BI064233	FOXP1	chr3	71142311	+	GHITM	chr10	85912085	+
intron-intron	ENST00000476233	ENST00000476233		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000476233	ENST00000354667		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000476233	ENST00000356674		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000354667	ENST00000476233		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000354667	ENST00000354667		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000354667	ENST00000356674		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000356674	ENST00000476233		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000356674	ENST00000354667		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
intron-intron	ENST00000356674	ENST00000356674		ChiTaRS3.1			BF334433	HNRNPA2B1	chr7	26236988	+	HNRNPA2B1	chr7	26237079	-
5CDS-5UTR	ENST00000230859	ENST00000295702		ChiTaRS3.1			BM811163	PAPD7	chr5	6753123	+	SSR2	chr1	155990704	-
5CDS-5UTR	ENST00000230859	ENST00000529008		ChiTaRS3.1			BM811163	PAPD7	chr5	6753123	+	SSR2	chr1	155990704	-
5CDS-5UTR	ENST00000230859	ENST00000496742		ChiTaRS3.1			BM811163	PAPD7	chr5	6753123	+	SSR2	chr1	155990704	-
5CDS-intron	ENST00000230859	ENST00000480567		ChiTaRS3.1			BM811163	PAPD7	chr5	6753123	+	SSR2	chr1	155990704	-
intron-intron	ENST00000243997	ENST00000367837		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000527578		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000415177		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000367826		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000367824		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000445176		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000314674		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000367822		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000367820		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000243997	ENST00000525067		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000367837		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000527578		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000415177		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000367826		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000367824		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000445176		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000314674		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000367822		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000367820		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395663	ENST00000525067		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000367837		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000527578		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000415177		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000367826		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000367824		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000445176		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000314674		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000367822		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000367820		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000395659	ENST00000525067		ChiTaRS3.1			DB352473	ATP5E	chr20	57603875	+	HBS1L	chr6	135292730	+
intron-intron	ENST00000404648	ENST00000305798		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000404648	ENST00000505184		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000404648	ENST00000509168		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000405164	ENST00000305798		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000405164	ENST00000505184		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000405164	ENST00000509168		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000336098	ENST00000305798		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000336098	ENST00000505184		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000336098	ENST00000509168		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000407946	ENST00000305798		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000407946	ENST00000505184		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
intron-intron	ENST00000407946	ENST00000509168		ChiTaRS3.1			AI207493	FGG	chr4	155531291	-	TSPAN5	chr4	99496210	+
In-frame	ENST00000395309	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395309	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000413890	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000438792	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395314	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395308	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000395311	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000416613	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000554507	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000395309		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000413890		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000438792		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000395314		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000395308		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000395311		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000416613		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000554507		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
In-frame	ENST00000555573	ENST00000555573		ChiTaRS3.1			BU676913	KTN1	chr14	56142614	-	KTN1	chr14	56139705	+
3UTR-intron	ENST00000359866	ENST00000396651		ChiTaRS3.1			BQ082553	DDA1	chr19	17431920	+	RPS8	chr1	45242583	+
3UTR-intron	ENST00000359866	ENST00000372209		ChiTaRS3.1			BQ082553	DDA1	chr19	17431920	+	RPS8	chr1	45242583	+
3UTR-intron	ENST00000359866	ENST00000485390		ChiTaRS3.1			BQ082553	DDA1	chr19	17431920	+	RPS8	chr1	45242583	+
intron-3UTR	ENST00000340978	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
intron-3UTR	ENST00000346042	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
intron-3UTR	ENST00000264917	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
intron-3UTR	ENST00000342343	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
intron-3UTR	ENST00000333194	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
intron-3UTR	ENST00000505283	ENST00000300086		ChiTaRS3.1			M85313	PDE8B	chr5	76523256	-	TERF2IP	chr16	75690999	+
Frame-shit	ENST00000395309	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395309	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395309	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395309	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000413890	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000413890	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000413890	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000438792	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000438792	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000438792	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395314	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395314	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395314	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395308	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395308	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395308	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000395311	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395311	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000395311	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
Frame-shit	ENST00000416613	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000416613	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
5CDS-intron	ENST00000416613	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000554507	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-intron	ENST00000554507	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-intron	ENST00000554507	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000395309		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000413890		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000438792		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000395314		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000395308		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000395311		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-3CDS	ENST00000555573	ENST00000416613		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-intron	ENST00000555573	ENST00000554507		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-intron	ENST00000555573	ENST00000555573		ChiTaRS3.1			AI760393	KTN1	chr14	56078888	-	KTN1	chr14	56096754	-
intron-intron	ENST00000597960	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000597960	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000597960	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000597960	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000597960	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000610101	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000610101	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000610101	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000610101	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000610101	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000596558	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000596558	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000596558	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000596558	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000596558	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000222308	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000222308	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000222308	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000222308	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000222308	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000608443	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000608443	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000608443	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000608443	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000608443	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000453489	ENST00000545391		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000453489	ENST00000361171		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000453489	ENST00000436593		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000453489	ENST00000535766		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
intron-intron	ENST00000453489	ENST00000485886		ChiTaRS3.1			DB322163	FKBP8	chr19	18642643	+	MVB12B	chr9	129249192	+
5UTR-3CDS	ENST00000353411	ENST00000451261		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-intron	ENST00000353411	ENST00000580017		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-3CDS	ENST00000522552	ENST00000451261		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-intron	ENST00000522552	ENST00000580017		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-3CDS	ENST00000521216	ENST00000451261		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-intron	ENST00000521216	ENST00000580017		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
intron-3CDS	ENST00000517625	ENST00000451261		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
intron-intron	ENST00000517625	ENST00000580017		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-3CDS	ENST00000522855	ENST00000451261		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
5UTR-intron	ENST00000522855	ENST00000580017		ChiTaRS3.1			BU568503	SKP1	chr5	133512548	-	DCAF8L2	chrX	27765547	+
intron-3UTR	ENST00000410006	ENST00000311028		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-3UTR	ENST00000410006	ENST00000395923		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-3UTR	ENST00000410006	ENST00000220931		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410006	ENST00000521599		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410006	ENST00000522951		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410006	ENST00000519508		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410006	ENST00000521371		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-3UTR	ENST00000410027	ENST00000311028		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-3UTR	ENST00000410027	ENST00000395923		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-3UTR	ENST00000410027	ENST00000220931		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410027	ENST00000521599		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410027	ENST00000522951		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410027	ENST00000519508		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
intron-intron	ENST00000410027	ENST00000521371		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-3UTR	ENST00000417826	ENST00000311028		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-3UTR	ENST00000417826	ENST00000395923		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-3UTR	ENST00000417826	ENST00000220931		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-intron	ENST00000417826	ENST00000521599		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-intron	ENST00000417826	ENST00000522951		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-intron	ENST00000417826	ENST00000519508		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
3UTR-intron	ENST00000417826	ENST00000521371		ChiTaRS3.1			AF131813	CCDC103	chr17	42980419	-	NCALD	chr8	102699046	-
5CDS-intron	ENST00000423620	ENST00000170447		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000423620	ENST00000411987		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000423620	ENST00000448482		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000433389	ENST00000170447		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000433389	ENST00000411987		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000433389	ENST00000448482		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000358397	ENST00000170447		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000358397	ENST00000411987		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000358397	ENST00000448482		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000454170	ENST00000170447		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000454170	ENST00000411987		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
5CDS-intron	ENST00000454170	ENST00000448482		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
intron-intron	ENST00000523347	ENST00000170447		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
intron-intron	ENST00000523347	ENST00000411987		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
intron-intron	ENST00000523347	ENST00000448482		ChiTaRS3.1			GU149302	ESRP1	chr8	95690599	+	MKRN2	chr3	12647800	-
intron-3CDS	ENST00000007516	ENST00000374078		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000007516	ENST00000374077		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000007516	ENST00000374072		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000007516	ENST00000397416		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000007516	ENST00000336695		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000570319	ENST00000374078		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000570319	ENST00000374077		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000570319	ENST00000374072		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000570319	ENST00000397416		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3CDS	ENST00000570319	ENST00000336695		ChiTaRS3.1			CN366593	NDUFAB1	chr16	23607557	-	ROMO1	chr20	34287648	+
intron-3UTR	ENST00000383168	ENST00000383168		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000383168	ENST00000581374		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000383168	ENST00000440832		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000383168	ENST00000583022		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-3UTR	ENST00000581374	ENST00000383168		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000581374	ENST00000581374		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000581374	ENST00000440832		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000581374	ENST00000583022		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-3UTR	ENST00000440832	ENST00000383168		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000440832	ENST00000581374		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000440832	ENST00000440832		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
intron-intron	ENST00000440832	ENST00000583022		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
5CDS-3UTR	ENST00000583022	ENST00000383168		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
5CDS-intron	ENST00000583022	ENST00000581374		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
5CDS-intron	ENST00000583022	ENST00000440832		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
5CDS-intron	ENST00000583022	ENST00000583022		ChiTaRS3.1			BF055033	AQP4	chr18	24436252	+	AQP4	chr18	24435347	+
Frame-shit	ENST00000350221	ENST00000350221		ChiTaRS3.1			BI044443	FSIP1	chr15	40018788	-	FSIP1	chr15	40034104	-
5CDS-5UTR	ENST00000350221	ENST00000559692		ChiTaRS3.1			BI044443	FSIP1	chr15	40018788	-	FSIP1	chr15	40034104	-
intron-3CDS	ENST00000559692	ENST00000350221		ChiTaRS3.1			BI044443	FSIP1	chr15	40018788	-	FSIP1	chr15	40034104	-
intron-5UTR	ENST00000559692	ENST00000559692		ChiTaRS3.1			BI044443	FSIP1	chr15	40018788	-	FSIP1	chr15	40034104	-
intron-3UTR	ENST00000453304	ENST00000278193		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3UTR	ENST00000453304	ENST00000524596		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3UTR	ENST00000506749	ENST00000278193		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3UTR	ENST00000506749	ENST00000524596		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3UTR	ENST00000504962	ENST00000278193		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3UTR	ENST00000504962	ENST00000524596		ChiTaRS3.1			CR745823	UNC5C	chr4	96346755	-	LIN7C	chr11	27516753	-
intron-3CDS	ENST00000228945	ENST00000228945		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000228945	ENST00000541644		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000228945	ENST00000539131		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000228945	ENST00000541546		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000541644	ENST00000228945		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000541644	ENST00000541644		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000541644	ENST00000539131		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000541644	ENST00000541546		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000539131	ENST00000228945		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000539131	ENST00000541644		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000539131	ENST00000539131		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000539131	ENST00000541546		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000541546	ENST00000228945		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-3CDS	ENST00000541546	ENST00000541644		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000541546	ENST00000539131		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-5UTR	ENST00000541546	ENST00000541546		ChiTaRS3.1			BF895713	ARHGDIB	chr12	15095768	+	ARHGDIB	chr12	15095638	-
intron-intron	ENST00000368301	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368301	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000361308	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000347559	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368300	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368299	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000448611	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000368297	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000473598	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000392353	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000368301		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000361308		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000347559		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000368300		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000368299		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000448611		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000368297		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000473598		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000392353		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
intron-intron	ENST00000496738	ENST00000496738		ChiTaRS3.1			AW793883	LMNA	chr1	156099550	-	LMNA	chr1	156099391	+
Frame-shit	ENST00000295598	ENST00000295598		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000295598	ENST00000537345		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000295598	ENST00000369496		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
5CDS-intron	ENST00000295598	ENST00000491156		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000537345	ENST00000295598		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000537345	ENST00000537345		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000537345	ENST00000369496		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
5CDS-intron	ENST00000537345	ENST00000491156		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000369496	ENST00000295598		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000369496	ENST00000537345		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
Frame-shit	ENST00000369496	ENST00000369496		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
5CDS-intron	ENST00000369496	ENST00000491156		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
3UTR-3CDS	ENST00000491156	ENST00000295598		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
3UTR-3CDS	ENST00000491156	ENST00000537345		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
3UTR-3CDS	ENST00000491156	ENST00000369496		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
3UTR-intron	ENST00000491156	ENST00000491156		ChiTaRS3.1			CV359423	ATP1A1	chr1	116931577	-	ATP1A1	chr1	116943765	+
intron-intron	ENST00000334163	ENST00000334163		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000334163	ENST00000369294		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000334163	ENST00000471254		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000369294	ENST00000334163		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000369294	ENST00000369294		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000369294	ENST00000471254		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000471254	ENST00000334163		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000471254	ENST00000369294		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-intron	ENST00000471254	ENST00000471254		ChiTaRS3.1			BI027593	POLR3C	chr1	145601562	-	POLR3C	chr1	145598536	+
intron-3CDS	ENST00000282020	ENST00000340385		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
intron-3UTR	ENST00000282020	ENST00000470017		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
intron-3CDS	ENST00000505687	ENST00000340385		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
intron-3UTR	ENST00000505687	ENST00000470017		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
intron-3CDS	ENST00000510992	ENST00000340385		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
intron-3UTR	ENST00000510992	ENST00000470017		ChiTaRS3.1			BF972933	GRID2	chr4	94123007	-	PRDX6	chr1	173455450	+
3UTR-3UTR	ENST00000337132	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000337132	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000337132	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-3UTR	ENST00000337132	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-3UTR	ENST00000337132	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000337132	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000504551	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000504551	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000504551	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000504551	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000504551	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000504551	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000457722	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000457722	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000457722	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000457722	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000457722	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000457722	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000406746	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000406746	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000406746	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000406746	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000406746	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000406746	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-3UTR	ENST00000443980	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000443980	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000443980	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-3UTR	ENST00000443980	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-3UTR	ENST00000443980	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
3UTR-intron	ENST00000443980	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000486390	ENST00000337132		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000486390	ENST00000504551		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000486390	ENST00000457722		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000486390	ENST00000406746		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-3UTR	ENST00000486390	ENST00000443980		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
intron-intron	ENST00000486390	ENST00000486390		ChiTaRS3.1			BE765033	NECAP2	chr1	16785795	-	NECAP2	chr1	16786314	+
Frame-shit	ENST00000377892	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377892	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377890	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377890	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377891	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377891	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377889	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000377889	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000535296	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000535296	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000338663	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
Frame-shit	ENST00000338663	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
intron-3CDS	ENST00000538682	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
intron-3CDS	ENST00000538682	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
intron-3CDS	ENST00000536981	ENST00000222330		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
intron-3CDS	ENST00000536981	ENST00000398249		ChiTaRS3.1			BF766193	SLC3A2	chr11	62648578	-	GSK3A	chr19	42736701	-
intron-intron	ENST00000398004	ENST00000398004		ChiTaRS3.1			AI918753	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000398004	ENST00000538043		ChiTaRS3.1			AI918753	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000538043	ENST00000398004		ChiTaRS3.1			AI918753	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
intron-intron	ENST00000538043	ENST00000538043		ChiTaRS3.1			AI918753	SLC35E3	chr12	69153659	-	SLC35E3	chr12	69157582	-
Frame-shit	ENST00000596304	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000596304	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000596304	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596304	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000430157	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000430157	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000430157	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000596273	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000596273	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000596273	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000442744	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000442744	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000442744	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595683	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595683	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595683	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595683	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595683	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595158	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000595158	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000595158	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000598780	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000598780	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000598780	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000598780	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000598780	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000599551	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000599551	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599551	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000597451	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000597451	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000597451	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000596304		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000430157		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000596273		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000442744		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000599595	ENST00000595683		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000595158		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
In-frame	ENST00000599595	ENST00000598780		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000599551		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000597451		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
Frame-shit	ENST00000599595	ENST00000599595		ChiTaRS3.1			AW270263	UBA52	chr19	18685884	-	UBA52	chr19	18685951	+
5CDS-intron	ENST00000262027	ENST00000262027		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
5CDS-intron	ENST00000262027	ENST00000315473		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
5CDS-intron	ENST00000262027	ENST00000447721		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
5CDS-intron	ENST00000315473	ENST00000262027		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
5CDS-intron	ENST00000315473	ENST00000315473		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
5CDS-intron	ENST00000315473	ENST00000447721		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
3UTR-intron	ENST00000447721	ENST00000262027		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
3UTR-intron	ENST00000447721	ENST00000315473		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
3UTR-intron	ENST00000447721	ENST00000447721		ChiTaRS3.1			AW410123	MARS	chr12	57905627	+	MARS	chr12	57906137	-
intron-3UTR	ENST00000415083	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000415083	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000415083	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000415083	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000415083	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000415083	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000415083	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000542420	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000542420	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542420	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542420	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542420	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542420	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542420	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000542743	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000542743	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542743	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542743	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542743	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542743	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000542743	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000539849	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000539849	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000539849	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000539849	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000539849	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000539849	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000539849	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000269137	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000269137	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000269137	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000269137	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000269137	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000269137	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000269137	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000545952	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000545952	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000545952	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000545952	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000545952	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000545952	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000545952	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000585241	ENST00000415083		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-3UTR	ENST00000585241	ENST00000542420		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000585241	ENST00000542743		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000585241	ENST00000539849		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000585241	ENST00000269137		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000585241	ENST00000545952		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
intron-intron	ENST00000585241	ENST00000585241		ChiTaRS3.1			AW936003	SS18	chr18	23597069	-	SS18	chr18	23597682	-
5CDS-3UTR	ENST00000278616	ENST00000541428		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-3UTR	ENST00000278616	ENST00000379454		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000523897		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000522919		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000356457		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000518068		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000517903		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000445642		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000517847		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000522835		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000517856		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000389204		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000522603		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000379449		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000278616	ENST00000517661		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-3UTR	ENST00000452508	ENST00000541428		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-3UTR	ENST00000452508	ENST00000379454		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000523897		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000522919		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000356457		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000518068		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000517903		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000445642		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000517847		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000522835		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000517856		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000389204		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000522603		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000379449		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
5CDS-intron	ENST00000452508	ENST00000517661		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-3UTR	ENST00000525178	ENST00000541428		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-3UTR	ENST00000525178	ENST00000379454		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000523897		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000522919		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000356457		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000518068		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000517903		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000445642		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000517847		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000522835		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000517856		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000389204		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000522603		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000379449		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
intron-intron	ENST00000525178	ENST00000517661		ChiTaRS3.1			CB269353	ATM	chr11	108106442	+	ASPH	chr8	62415173	-
3UTR-intron	ENST00000373206	ENST00000285238		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000515707		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000427699		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373206	ENST00000510891		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000285238		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000515707		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000427699		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
3UTR-intron	ENST00000373204	ENST00000510891		ChiTaRS3.1			BG954173	AGO1	chr1	36385255	-	ABCC3	chr17	48757085	-
Frame-shit	ENST00000216277	ENST00000267584		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000216277	ENST00000555570		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000216277	ENST00000554313		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
Frame-shit	ENST00000557320	ENST00000267584		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000557320	ENST00000555570		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000557320	ENST00000554313		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
3UTR-3CDS	ENST00000554130	ENST00000267584		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
3UTR-intron	ENST00000554130	ENST00000555570		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
3UTR-intron	ENST00000554130	ENST00000554313		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
Frame-shit	ENST00000557471	ENST00000267584		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000557471	ENST00000555570		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000557471	ENST00000554313		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
Frame-shit	ENST00000392990	ENST00000267584		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000392990	ENST00000555570		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
5CDS-intron	ENST00000392990	ENST00000554313		ChiTaRS3.1			BU944613	PAPOLA	chr14	96968938	+	AK7	chr14	96904172	+
intron-intron	ENST00000368073	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368073	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000326837	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000368074	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000608310	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000556710	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000610139	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368073		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000326837		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000368074		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000608310		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000556710		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000610139		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
intron-intron	ENST00000475733	ENST00000475733		ChiTaRS3.1			CK903773	DCAF8	chr1	160248555	-	DCAF8	chr1	160249214	-
5CDS-3UTR	ENST00000375679	ENST00000352732		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-intron	ENST00000375679	ENST00000565973		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-3UTR	ENST00000375679	ENST00000355100		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-intron	ENST00000375679	ENST00000562254		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-3UTR	ENST00000375667	ENST00000352732		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-intron	ENST00000375667	ENST00000565973		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-3UTR	ENST00000375667	ENST00000355100		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
5CDS-intron	ENST00000375667	ENST00000562254		ChiTaRS3.1			BF822523	CLCNKB	chr1	16376377	-	ABHD2	chr15	89742839	-
intron-3CDS	ENST00000230431	ENST00000230431		ChiTaRS3.1			BF591833	DNPH1	chr6	43193489	-	DNPH1	chr6	43193554	+
intron-3UTR	ENST00000230431	ENST00000393987		ChiTaRS3.1			BF591833	DNPH1	chr6	43193489	-	DNPH1	chr6	43193554	+
intron-3CDS	ENST00000393987	ENST00000230431		ChiTaRS3.1			BF591833	DNPH1	chr6	43193489	-	DNPH1	chr6	43193554	+
intron-3UTR	ENST00000393987	ENST00000393987		ChiTaRS3.1			BF591833	DNPH1	chr6	43193489	-	DNPH1	chr6	43193554	+
intron-intron	ENST00000252996	ENST00000252996		ChiTaRS3.1			BQ318943	TAF4	chr20	60585315	+	TAF4	chr20	60583032	+
intron-intron	ENST00000252996	ENST00000609045		ChiTaRS3.1			BQ318943	TAF4	chr20	60585315	+	TAF4	chr20	60583032	+
intron-intron	ENST00000609045	ENST00000252996		ChiTaRS3.1			BQ318943	TAF4	chr20	60585315	+	TAF4	chr20	60583032	+
intron-intron	ENST00000609045	ENST00000609045		ChiTaRS3.1			BQ318943	TAF4	chr20	60585315	+	TAF4	chr20	60583032	+
intron-intron	ENST00000546088	ENST00000546088		ChiTaRS3.1			BE702393	TAF1D	chr11	93469441	+	TAF1D	chr11	93469470	-
intron-intron	ENST00000546088	ENST00000448108		ChiTaRS3.1			BE702393	TAF1D	chr11	93469441	+	TAF1D	chr11	93469470	-
intron-intron	ENST00000448108	ENST00000546088		ChiTaRS3.1			BE702393	TAF1D	chr11	93469441	+	TAF1D	chr11	93469470	-
intron-intron	ENST00000448108	ENST00000448108		ChiTaRS3.1			BE702393	TAF1D	chr11	93469441	+	TAF1D	chr11	93469470	-
3UTR-intron	ENST00000305135	ENST00000248054		ChiTaRS3.1			BQ181363	YEATS2	chr3	183529995	-	SIN3B	chr19	16954702	-
3UTR-intron	ENST00000305135	ENST00000596802		ChiTaRS3.1			BQ181363	YEATS2	chr3	183529995	-	SIN3B	chr19	16954702	-
3UTR-intron	ENST00000305135	ENST00000379803		ChiTaRS3.1			BQ181363	YEATS2	chr3	183529995	-	SIN3B	chr19	16954702	-
3UTR-intron	ENST00000305135	ENST00000595541		ChiTaRS3.1			BQ181363	YEATS2	chr3	183529995	-	SIN3B	chr19	16954702	-
3UTR-intron	ENST00000305135	ENST00000594235		ChiTaRS3.1			BQ181363	YEATS2	chr3	183529995	-	SIN3B	chr19	16954702	-
5UTR-intron	ENST00000336761	ENST00000336761		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
5UTR-intron	ENST00000336761	ENST00000233078		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
5UTR-intron	ENST00000336761	ENST00000586579		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
5UTR-intron	ENST00000233078	ENST00000336761		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
5UTR-intron	ENST00000233078	ENST00000233078		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
5UTR-intron	ENST00000233078	ENST00000586579		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
3UTR-intron	ENST00000586579	ENST00000336761		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
3UTR-intron	ENST00000586579	ENST00000233078		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
3UTR-intron	ENST00000586579	ENST00000586579		ChiTaRS3.1			BF932473	DAZAP1	chr19	1407742	-	DAZAP1	chr19	1429639	+
intron-intron	ENST00000209875	ENST00000587340		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000209875	ENST00000254165		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000209875	ENST00000587492		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000209875	ENST00000391713		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000209875	ENST00000592355		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000209875	ENST00000591078		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000587340		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000254165		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000587492		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000391713		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000592355		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000439541	ENST00000591078		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000587340		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000254165		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000587492		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000391713		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000592355		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
intron-intron	ENST00000550411	ENST00000591078		ChiTaRS3.1			BU181183	CBX5	chr12	54629375	-	ZSCAN5A	chr19	56767599	-
3UTR-intron	ENST00000285518	ENST00000469172		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
3UTR-3UTR	ENST00000285518	ENST00000265866		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
3UTR-intron	ENST00000285518	ENST00000441000		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
3UTR-intron	ENST00000285518	ENST00000354695		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
intron-intron	ENST00000530716	ENST00000469172		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
intron-3UTR	ENST00000530716	ENST00000265866		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
intron-intron	ENST00000530716	ENST00000441000		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
intron-intron	ENST00000530716	ENST00000354695		ChiTaRS3.1			BE089963	AGPAT5	chr8	6616626	+	HNRNPH3	chr10	70102841	-
intron-intron	ENST00000261609	ENST00000366601		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000261609	ENST00000406207		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000261609	ENST00000543662		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000261609	ENST00000472011		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000563945	ENST00000366601		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000563945	ENST00000406207		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000563945	ENST00000543662		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-intron	ENST00000563945	ENST00000472011		ChiTaRS3.1			CF123263	HERC2	chr15	28561395	+	TBCE	chr1	235534708	-
intron-3CDS	ENST00000370321	ENST00000355280		ChiTaRS3.1			AI040133	RPL5	chr1	93306111	-	MINK1	chr17	4794917	-
intron-3CDS	ENST00000370321	ENST00000347992		ChiTaRS3.1			AI040133	RPL5	chr1	93306111	-	MINK1	chr17	4794917	-
intron-3CDS	ENST00000370321	ENST00000453408		ChiTaRS3.1			AI040133	RPL5	chr1	93306111	-	MINK1	chr17	4794917	-
intron-3CDS	ENST00000587340	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000587340	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3CDS	ENST00000254165	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000254165	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3CDS	ENST00000587492	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000587492	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3CDS	ENST00000391713	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000391713	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3CDS	ENST00000592355	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000592355	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3CDS	ENST00000591078	ENST00000336395		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000591078	ENST00000498522		ChiTaRS3.1			BG982433	ZSCAN5A	chr19	56802734	+	TESK1	chr9	35608434	+
intron-3UTR	ENST00000355349	ENST00000323798		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-3UTR	ENST00000355349	ENST00000263276		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000541188		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000544287		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000540532		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-intron	ENST00000355349	ENST00000457974		ChiTaRS3.1			AI332313	MYH7	chr14	23883041	+	GYS1	chr19	49472158	+
intron-3CDS	ENST00000259605	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000259605	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000259605	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000259605	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000259605	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000259605	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000259605	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000353739	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000353739	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000357058	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000357058	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000350199	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000350199	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377885	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000377885	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000377877	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000377877	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000360252		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000475892		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000356185		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000350612		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000464744		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-3CDS	ENST00000491349	ENST00000542180		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
intron-intron	ENST00000491349	ENST00000470359		ChiTaRS3.1			AW903133	RNF38	chr9	36336725	-	SUPT20H	chr13	37598294	+
3UTR-3CDS	ENST00000320892	ENST00000393977		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
3UTR-5UTR	ENST00000320892	ENST00000377503		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
3UTR-5UTR	ENST00000320892	ENST00000257536		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
3UTR-5UTR	ENST00000320892	ENST00000541762		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
3UTR-5UTR	ENST00000320892	ENST00000519673		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
3UTR-intron	ENST00000320892	ENST00000505287		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-3CDS	ENST00000467276	ENST00000393977		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-5UTR	ENST00000467276	ENST00000377503		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-5UTR	ENST00000467276	ENST00000257536		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-5UTR	ENST00000467276	ENST00000541762		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-5UTR	ENST00000467276	ENST00000519673		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-intron	ENST00000467276	ENST00000505287		ChiTaRS3.1			BE166383	RNF144A	chr2	7181704	-	CCNJL	chr5	159682603	-
intron-intron	ENST00000330978	ENST00000330978		ChiTaRS3.1			AW366913	BOLA2	chr16	30007103	-	BOLA2	chr16	30007337	+
intron-3CDS	ENST00000345807	ENST00000360003		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000345807	ENST00000369077		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000345807	ENST00000466047		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000310418	ENST00000360003		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000310418	ENST00000369077		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000310418	ENST00000466047		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000509319	ENST00000360003		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-3CDS	ENST00000509319	ENST00000369077		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-5UTR	ENST00000509319	ENST00000466047		ChiTaRS3.1			N90043	CLTB	chr5	175819547	+	MCMBP	chr10	121596429	-
intron-intron	ENST00000454498	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000454498	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000454498	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000332246	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000332246	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000332246	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000311540	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000311540	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000311540	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000522854	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000522854	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000522854	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000544602	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000544602	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000544602	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000518542	ENST00000429054		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000518542	ENST00000259939		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
intron-intron	ENST00000518542	ENST00000486622		ChiTaRS3.1			CV347923	CSGALNACT1	chr8	19513629	+	RNF144B	chr6	18439887	-
5CDS-intron	ENST00000335221	ENST00000446632		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000438560		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000256452		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000418488		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000445864		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000383846		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000311981		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000430514		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000456302		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000335221	ENST00000466722		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000446632		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000438560		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000256452		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000418488		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000445864		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000383846		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000311981		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000430514		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000456302		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000321892	ENST00000466722		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000446632		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000438560		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000256452		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000418488		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000445864		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000383846		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000311981		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000430514		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000456302		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000306378	ENST00000466722		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000446632		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000438560		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000256452		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000418488		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000445864		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000383846		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000311981		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000430514		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000456302		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
5CDS-intron	ENST00000424123	ENST00000466722		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000446632		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000438560		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000256452		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000418488		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000445864		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000383846		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000311981		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000430514		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000456302		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-intron	ENST00000577770	ENST00000466722		ChiTaRS3.1			BF895873	BPTF	chr17	65941906	+	IL5RA	chr3	3120178	+
intron-5UTR	ENST00000299633	ENST00000299633		ChiTaRS3.1			AW295523	HDGFRP3	chr15	83876381	+	HDGFRP3	chr15	83876237	-
intron-3CDS	ENST00000506722	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000506722	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000506722	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000394537	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000394537	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000394537	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000357077	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000357077	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000357077	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000264366	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000264366	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000264366	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000509550	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000509550	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000509550	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000510275	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000510275	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000510275	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000504887	ENST00000216254		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-3CDS	ENST00000504887	ENST00000396512		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000504887	ENST00000466237		ChiTaRS3.1			BI596363	ANK2	chr4	114038344	+	ACO2	chr22	41911472	+
intron-intron	ENST00000421307	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421307	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000354379	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000336686	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000421276	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000396428	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000440230	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000421307		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000354379		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000336686		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000421276		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000396428		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000440230		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-intron	ENST00000490597	ENST00000490597		ChiTaRS3.1			W88603	LRRFIP2	chr3	37144326	-	LRRFIP2	chr3	37147306	-
intron-3CDS	ENST00000556859	ENST00000225964		ChiTaRS3.1			BG877983	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
3UTR-3CDS	ENST00000395153	ENST00000225964		ChiTaRS3.1			BG877983	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000335867	ENST00000225964		ChiTaRS3.1			BG877983	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000541264	ENST00000225964		ChiTaRS3.1			BG877983	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-3CDS	ENST00000555845	ENST00000225964		ChiTaRS3.1			BG877983	DACT1	chr14	59114217	+	COL1A1	chr17	48264057	+
intron-intron	ENST00000377694	ENST00000377694		ChiTaRS3.1			DA613923	IGFBPL1	chr9	38408328	-	IGFBPL1	chr9	38406870	+
3UTR-3UTR	ENST00000379251	ENST00000284268		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
3UTR-intron	ENST00000379251	ENST00000535119		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
3UTR-intron	ENST00000379251	ENST00000503939		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
3UTR-3UTR	ENST00000379253	ENST00000284268		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
3UTR-intron	ENST00000379253	ENST00000535119		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
3UTR-intron	ENST00000379253	ENST00000503939		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-3UTR	ENST00000379254	ENST00000284268		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000379254	ENST00000535119		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000379254	ENST00000503939		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-3UTR	ENST00000379270	ENST00000284268		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000379270	ENST00000535119		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000379270	ENST00000503939		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-3UTR	ENST00000489394	ENST00000284268		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000489394	ENST00000535119		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-intron	ENST00000489394	ENST00000503939		ChiTaRS3.1			AW361033	SAT1	chrX	23802281	+	ANKH	chr5	14710493	-
intron-3UTR	ENST00000357393	ENST00000274457		ChiTaRS3.1			AW389983	AKNAD1	chr1	109426234	-	FEM1C	chr5	114858823	+
intron-3UTR	ENST00000370001	ENST00000274457		ChiTaRS3.1			AW389983	AKNAD1	chr1	109426234	-	FEM1C	chr5	114858823	+
intron-3UTR	ENST00000477908	ENST00000274457		ChiTaRS3.1			AW389983	AKNAD1	chr1	109426234	-	FEM1C	chr5	114858823	+
intron-3UTR	ENST00000369994	ENST00000274457		ChiTaRS3.1			AW389983	AKNAD1	chr1	109426234	-	FEM1C	chr5	114858823	+
intron-3UTR	ENST00000369995	ENST00000274457		ChiTaRS3.1			AW389983	AKNAD1	chr1	109426234	-	FEM1C	chr5	114858823	+
intron-3UTR	ENST00000255641	ENST00000489632		ChiTaRS3.1			CR987803	CSNK1G2	chr19	1941955	-	WDR86-AS1	chr7	151108753	+
intron-3UTR	ENST00000255641	ENST00000480632		ChiTaRS3.1			CR987803	CSNK1G2	chr19	1941955	-	WDR86-AS1	chr7	151108753	+
intron-3UTR	ENST00000587123	ENST00000489632		ChiTaRS3.1			CR987803	CSNK1G2	chr19	1941955	-	WDR86-AS1	chr7	151108753	+
intron-3UTR	ENST00000587123	ENST00000480632		ChiTaRS3.1			CR987803	CSNK1G2	chr19	1941955	-	WDR86-AS1	chr7	151108753	+
5UTR-intron	ENST00000404535	ENST00000308724		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
5UTR-intron	ENST00000404535	ENST00000397120		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
5UTR-intron	ENST00000404535	ENST00000556277		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
5UTR-intron	ENST00000288014	ENST00000308724		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
5UTR-intron	ENST00000288014	ENST00000397120		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
5UTR-intron	ENST00000288014	ENST00000556277		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000556015	ENST00000308724		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000556015	ENST00000397120		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000556015	ENST00000556277		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554970	ENST00000308724		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554970	ENST00000397120		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554970	ENST00000556277		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554789	ENST00000308724		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554789	ENST00000397120		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-intron	ENST00000554789	ENST00000556277		ChiTaRS3.1			BQ365373	THTPA	chr14	24025449	-	AP1G2	chr14	24034125	-
intron-3UTR	ENST00000265044	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000265044	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000467789	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000467789	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000476217	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000476217	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000478842	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000478842	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000463503	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000463503	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000496050	ENST00000375712		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-intron	ENST00000496050	ENST00000418717		ChiTaRS3.1			AI380153	SSR3	chr3	156258158	+	KIF3B	chr20	30921185	-
intron-3UTR	ENST00000519716	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000519716	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000519716	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000519716	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000519716	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000519716	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000252773	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000252773	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000252773	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000252773	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000252773	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000252773	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000428389	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000428389	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000428389	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000428389	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000428389	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000428389	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000551649	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000551649	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000551649	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000551649	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000551649	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000551649	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000552293	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000552293	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000552293	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000552293	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000552293	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000552293	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000550896	ENST00000519716		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000550896	ENST00000252773		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000550896	ENST00000428389		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3UTR	ENST00000550896	ENST00000551649		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000550896	ENST00000552293		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-intron	ENST00000550896	ENST00000550896		ChiTaRS3.1			BG818743	UNC13A	chr19	17716638	+	UNC13A	chr19	17716607	-
intron-3CDS	ENST00000435706	ENST00000435706		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000435706	ENST00000264331		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-5UTR	ENST00000435706	ENST00000542520		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000435706	ENST00000540199		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000435706	ENST00000475717		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000264331	ENST00000435706		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000264331	ENST00000264331		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-5UTR	ENST00000264331	ENST00000542520		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000264331	ENST00000540199		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000264331	ENST00000475717		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000542520	ENST00000435706		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000542520	ENST00000264331		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-5UTR	ENST00000542520	ENST00000542520		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000542520	ENST00000540199		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000542520	ENST00000475717		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000540199	ENST00000435706		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000540199	ENST00000264331		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-5UTR	ENST00000540199	ENST00000542520		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000540199	ENST00000540199		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000540199	ENST00000475717		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000475717	ENST00000435706		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3CDS	ENST00000475717	ENST00000264331		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-5UTR	ENST00000475717	ENST00000542520		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000475717	ENST00000540199		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-intron	ENST00000475717	ENST00000475717		ChiTaRS3.1			BQ431453	TOP2B	chr3	25660268	+	TOP2B	chr3	25660244	-
intron-3UTR	ENST00000356763	ENST00000356763		ChiTaRS3.1			AI475213	PIK3R4	chr3	130397958	+	PIK3R4	chr3	130398031	-
intron-intron	ENST00000356763	ENST00000512677		ChiTaRS3.1			AI475213	PIK3R4	chr3	130397958	+	PIK3R4	chr3	130398031	-
intron-3UTR	ENST00000512677	ENST00000356763		ChiTaRS3.1			AI475213	PIK3R4	chr3	130397958	+	PIK3R4	chr3	130398031	-
intron-intron	ENST00000512677	ENST00000512677		ChiTaRS3.1			AI475213	PIK3R4	chr3	130397958	+	PIK3R4	chr3	130398031	-
intron-intron	ENST00000292123	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000292123	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000592224	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000586934	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000454510	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000433404	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000588852	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000292123		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000592224		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000586934		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000454510		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000433404		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000588852		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
intron-intron	ENST00000538656	ENST00000538656		ChiTaRS3.1			BF376713	SAFB	chr19	5634348	-	SAFB	chr19	5639822	-
3UTR-3UTR	ENST00000396000	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-intron	ENST00000396000	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000396000	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000396000	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000396000	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000262735	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-intron	ENST00000262735	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000262735	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000262735	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000262735	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000407236	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-intron	ENST00000407236	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000407236	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000407236	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
3UTR-3UTR	ENST00000407236	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000481567	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-intron	ENST00000481567	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000481567	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000481567	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000481567	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000402126	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-intron	ENST00000402126	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000402126	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000402126	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000402126	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000434345	ENST00000382456		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-intron	ENST00000434345	ENST00000411763		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000434345	ENST00000292807		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000434345	ENST00000439647		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-3UTR	ENST00000434345	ENST00000461733		ChiTaRS3.1			AI079573	PPARA	chr22	46637648	-	AP2M1	chr3	183901807	-
intron-intron	ENST00000409558	ENST00000560606		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000409558	ENST00000300069		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000272322	ENST00000560606		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000272322	ENST00000300069		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000354504	ENST00000560606		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000354504	ENST00000300069		ChiTaRS3.1			AW139503	VPS54	chr2	64245646	+	RBPMS2	chr15	65064925	+
intron-intron	ENST00000366911	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366911	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366911	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000320285	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000320285	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000320285	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000457520	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000457520	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000457520	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366908	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366908	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366908	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366906	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366906	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366906	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366905	ENST00000253233		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366905	ENST00000366329		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000366905	ENST00000429587		ChiTaRS3.1			AK126043	AGPAT4	chr6	161565134	+	C12orf65	chr12	123732823	+
intron-intron	ENST00000571688	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571688	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000413364	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000339430	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000381810	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000570904	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571459	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000572255	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000576036	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574763	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000571976	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000448521		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000456905		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000440166		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000452943		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000468694		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000494774		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000490734		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
intron-intron	ENST00000574703	ENST00000497184		ChiTaRS3.1			BE830303	LITAF	chr16	11642974	-	DBNL	chr7	44085791	+
5CDS-intron	ENST00000435881	ENST00000361205		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000399848		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000359446		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000587757		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000585931		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000586765		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000590308		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000435881	ENST00000592991		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000361205		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000399848		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000359446		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000587757		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000585931		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000586765		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000590308		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000246912	ENST00000592991		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000361205		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000399848		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000359446		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000587757		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000585931		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000586765		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000590308		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
5CDS-intron	ENST00000346833	ENST00000592991		ChiTaRS3.1			AV737003	MLX	chr17	40720940	+	LDLRAD4	chr18	13567391	-
intron-intron	ENST00000505658	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000505658	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000393227	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000311571	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000240304	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000544170	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000264052		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000409112		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000340126		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000427101		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000409824		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000409341		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000341950		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
intron-intron	ENST00000503798	ENST00000409897		ChiTaRS3.1			AW364443	LUC7L3	chr17	48806171	-	SP100	chr2	231330650	-
3UTR-3UTR	ENST00000379887	ENST00000379887		ChiTaRS3.1			DB350003	ARIH1	chr15	72877552	-	ARIH1	chr15	72878413	-
3UTR-intron	ENST00000379887	ENST00000562891		ChiTaRS3.1			DB350003	ARIH1	chr15	72877552	-	ARIH1	chr15	72878413	-
intron-3UTR	ENST00000562891	ENST00000379887		ChiTaRS3.1			DB350003	ARIH1	chr15	72877552	-	ARIH1	chr15	72878413	-
intron-intron	ENST00000562891	ENST00000562891		ChiTaRS3.1			DB350003	ARIH1	chr15	72877552	-	ARIH1	chr15	72878413	-
In-frame	ENST00000261647	ENST00000268712		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
In-frame	ENST00000261647	ENST00000395851		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
In-frame	ENST00000261647	ENST00000395857		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
5CDS-intron	ENST00000261647	ENST00000395848		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
5CDS-intron	ENST00000261647	ENST00000583226		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
In-frame	ENST00000486880	ENST00000268712		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
In-frame	ENST00000486880	ENST00000395851		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
In-frame	ENST00000486880	ENST00000395857		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
5CDS-intron	ENST00000486880	ENST00000395848		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
5CDS-intron	ENST00000486880	ENST00000583226		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
3UTR-3CDS	ENST00000497842	ENST00000268712		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
3UTR-3CDS	ENST00000497842	ENST00000395851		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
3UTR-3CDS	ENST00000497842	ENST00000395857		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
3UTR-intron	ENST00000497842	ENST00000395848		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
3UTR-intron	ENST00000497842	ENST00000583226		ChiTaRS3.1			BU192483	TTC19	chr17	15930017	+	NCOR1	chr17	15938260	-
intron-intron	ENST00000357668	ENST00000357668		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000357668	ENST00000518721		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000357668	ENST00000520625		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000518721	ENST00000357668		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000518721	ENST00000518721		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000518721	ENST00000520625		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000520625	ENST00000357668		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000520625	ENST00000518721		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-intron	ENST00000520625	ENST00000520625		ChiTaRS3.1			BE148003	ASAP1	chr8	131179077	+	ASAP1	chr8	131155347	-
intron-3CDS	ENST00000392882	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000392882	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000392882	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000358655	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000358655	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000355338	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000355338	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000344102	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000344102	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000557135	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000557135	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000556645	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000556645	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000427410		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000447388		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000425457		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000456393		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000372654		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000372653		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000372652		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000372651		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000440226		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-3CDS	ENST00000554084	ENST00000308733		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000554084	ENST00000483091		ChiTaRS3.1			S74703	WARS	chr14	100801304	+	NFYC	chr1	41218892	+
intron-intron	ENST00000361905	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361905	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361905	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361905	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361905	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361905	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527636	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000527575	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000334310	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000361985	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000361905		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000527636		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000527575		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000334310		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000361985		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000526600	ENST00000526600		ChiTaRS3.1			BF353523	TEAD1	chr11	12799041	-	TEAD1	chr11	12798919	+
intron-intron	ENST00000546087	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000546087	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000546087	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000538183	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000538183	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000367055	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367055	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000367054	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000367054	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000444946	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000444946	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000337404	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000337404	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000452684	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000452684	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000546087		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3UTR	ENST00000535372	ENST00000538183		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000367055		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000367054		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000444946		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000337404		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000452684		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-intron	ENST00000535372	ENST00000535372		ChiTaRS3.1			AW838473	SOD2	chr6	160101720	+	SOD2	chr6	160100952	+
intron-3CDS	ENST00000425534	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000425534	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000389826	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000389826	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000448225	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000448225	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000295612	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000295612	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000468147	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000468147	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-3CDS	ENST00000421769	ENST00000425534		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000389826		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000448225		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000295612		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000468147		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-5UTR	ENST00000421769	ENST00000421769		ChiTaRS3.1			BF955653	EIF4E3	chr3	71733723	-	EIF4E3	chr3	71759635	-
intron-intron	ENST00000421351	ENST00000265304		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
intron-intron	ENST00000421351	ENST00000498107		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
intron-intron	ENST00000421351	ENST00000469123		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
intron-intron	ENST00000421351	ENST00000465582		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
intron-intron	ENST00000421351	ENST00000484178		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
intron-intron	ENST00000421351	ENST00000481508		ChiTaRS3.1			BE710423	PERP	chr6	138412846	+	SSBP1	chr7	141441388	+
In-frame	ENST00000407625	ENST00000407625		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
In-frame	ENST00000407625	ENST00000420135		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
5CDS-intron	ENST00000407625	ENST00000461972		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
In-frame	ENST00000420135	ENST00000407625		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
In-frame	ENST00000420135	ENST00000420135		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
5CDS-intron	ENST00000420135	ENST00000461972		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
intron-3CDS	ENST00000461972	ENST00000407625		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
intron-3CDS	ENST00000461972	ENST00000420135		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
intron-intron	ENST00000461972	ENST00000461972		ChiTaRS3.1			BF963013	FAM228B	chr2	24360908	-	FAM228B	chr2	24360867	+
3UTR-3CDS	ENST00000331462	ENST00000370010		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
3UTR-3CDS	ENST00000331462	ENST00000370014		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
3UTR-3CDS	ENST00000331462	ENST00000447266		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
3UTR-3UTR	ENST00000331462	ENST00000541192		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
3UTR-intron	ENST00000331462	ENST00000327284		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
3UTR-intron	ENST00000331462	ENST00000436928		ChiTaRS3.1			AW089983	HOXD1	chr2	177055492	-	SENP6	chr6	76425286	+
intron-intron	ENST00000249883	ENST00000358823		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000249883	ENST00000413307		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000249883	ENST00000236925		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000422605	ENST00000358823		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000422605	ENST00000413307		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000422605	ENST00000236925		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000514516	ENST00000358823		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000514516	ENST00000413307		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000514516	ENST00000236925		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000513145	ENST00000358823		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000513145	ENST00000413307		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000513145	ENST00000236925		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000511759	ENST00000358823		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000511759	ENST00000413307		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-intron	ENST00000511759	ENST00000236925		ChiTaRS3.1			BI011743	AMOTL2	chr3	134091412	+	CAMSAP2	chr1	200785814	+
intron-3CDS	ENST00000417209	ENST00000407559		ChiTaRS3.1			BG942983	RGS21	chr1	192329409	-	WDR60	chr7	158662544	+
intron-3UTR	ENST00000177742	ENST00000169298		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-3UTR	ENST00000177742	ENST00000457772		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-3UTR	ENST00000177742	ENST00000448044		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-intron	ENST00000177742	ENST00000487031		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-3UTR	ENST00000397375	ENST00000169298		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-3UTR	ENST00000397375	ENST00000457772		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-3UTR	ENST00000397375	ENST00000448044		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
intron-intron	ENST00000397375	ENST00000487031		ChiTaRS3.1			AA973233	MRPS34	chr16	1822162	+	ST6GAL1	chr3	186795665	-
3UTR-intron	ENST00000282059	ENST00000323851		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000354944		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000521414		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000537882		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000414097		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000518176		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000522476		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000282059	ENST00000518066		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000323851		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000354944		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000521414		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000537882		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000414097		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000518176		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000522476		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
3UTR-intron	ENST00000321319	ENST00000518066		ChiTaRS3.1			BF748553	C18orf25	chr18	43845243	+	NDRG1	chr8	134299997	-
intron-3CDS	ENST00000268099	ENST00000343053		ChiTaRS3.1			BM917903	SCAMP2	chr15	75137895	+	NELFB	chr9	140160853	+
intron-intron	ENST00000389709	ENST00000389709		ChiTaRS3.1			BM723873	ZXDC	chr3	126178371	+	ZXDC	chr3	126178333	-
intron-intron	ENST00000389709	ENST00000336332		ChiTaRS3.1			BM723873	ZXDC	chr3	126178371	+	ZXDC	chr3	126178333	-
intron-intron	ENST00000336332	ENST00000389709		ChiTaRS3.1			BM723873	ZXDC	chr3	126178371	+	ZXDC	chr3	126178333	-
intron-intron	ENST00000336332	ENST00000336332		ChiTaRS3.1			BM723873	ZXDC	chr3	126178371	+	ZXDC	chr3	126178333	-
intron-3CDS	ENST00000535741	ENST00000395309		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000413890		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000438792		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000395314		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000395308		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000395311		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000535741	ENST00000416613		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000535741	ENST00000554507		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000535741	ENST00000555573		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000395309		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000413890		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000438792		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000395314		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000395308		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000395311		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000510413	ENST00000416613		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000510413	ENST00000554507		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000510413	ENST00000555573		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000395309		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000413890		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000438792		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000395314		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000395308		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000395311		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000503716	ENST00000416613		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000503716	ENST00000554507		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000503716	ENST00000555573		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000395309		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000413890		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000438792		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000395314		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000395308		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000395311		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000357115	ENST00000416613		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000357115	ENST00000554507		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000357115	ENST00000555573		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000395309		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000413890		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000438792		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000395314		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000395308		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000395311		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-3CDS	ENST00000507224	ENST00000416613		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000507224	ENST00000554507		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000507224	ENST00000555573		ChiTaRS3.1			BF815703	LRBA	chr4	151531135	+	KTN1	chr14	56096715	+
intron-intron	ENST00000288602	ENST00000288602		ChiTaRS3.1			AW859953	BRAF	chr7	140609919	-	BRAF	chr7	140610530	-
5UTR-intron	ENST00000590898	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5UTR-intron	ENST00000590898	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5UTR-intron	ENST00000590898	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000399022	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000399022	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000399022	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000337059	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000337059	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000337059	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000357384	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000357384	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000357384	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5UTR-intron	ENST00000588737	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5UTR-intron	ENST00000588737	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5UTR-intron	ENST00000588737	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000319040	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000319040	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
5CDS-intron	ENST00000319040	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000588459	ENST00000589935		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000588459	ENST00000357574		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000588459	ENST00000254442		ChiTaRS3.1			DA106303	RPRD1A	chr18	33647214	-	WDR7	chr18	54398612	+
intron-intron	ENST00000296695	ENST00000341724		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000296695	ENST00000372004		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000296695	ENST00000371998		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000296695	ENST00000371997		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000296695	ENST00000497292		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000510027	ENST00000341724		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000510027	ENST00000372004		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000510027	ENST00000371998		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000510027	ENST00000371997		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000510027	ENST00000497292		ChiTaRS3.1			AI571643	SPINK1	chr5	147207693	+	NCOA3	chr20	46232843	-
intron-intron	ENST00000493559	ENST00000493559		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-3UTR	ENST00000493559	ENST00000608872		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000493559	ENST00000340778		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000608872	ENST00000493559		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-3UTR	ENST00000608872	ENST00000608872		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000608872	ENST00000340778		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000340778	ENST00000493559		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-3UTR	ENST00000340778	ENST00000608872		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000340778	ENST00000340778		ChiTaRS3.1			BG956103	FBXW2	chr9	123522249	-	FBXW2	chr9	123522106	+
intron-intron	ENST00000483271	ENST00000483271		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-3UTR	ENST00000483271	ENST00000366513		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-intron	ENST00000483271	ENST00000366512		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
3UTR-intron	ENST00000366513	ENST00000483271		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
3UTR-3UTR	ENST00000366513	ENST00000366513		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
3UTR-intron	ENST00000366513	ENST00000366512		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-intron	ENST00000366512	ENST00000483271		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-3UTR	ENST00000366512	ENST00000366513		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-intron	ENST00000366512	ENST00000366512		ChiTaRS3.1			AA972163	CNST	chr1	246830373	-	CNST	chr1	246831193	-
intron-3CDS	ENST00000441802	ENST00000441802		ChiTaRS3.1			BE815083	FAT1	chr4	187538890	-	FAT1	chr4	187535436	+
intron-intron	ENST00000441802	ENST00000512347		ChiTaRS3.1			BE815083	FAT1	chr4	187538890	-	FAT1	chr4	187535436	+
intron-3CDS	ENST00000512347	ENST00000441802		ChiTaRS3.1			BE815083	FAT1	chr4	187538890	-	FAT1	chr4	187535436	+
intron-intron	ENST00000512347	ENST00000512347		ChiTaRS3.1			BE815083	FAT1	chr4	187538890	-	FAT1	chr4	187535436	+
intron-5UTR	ENST00000468311	ENST00000265062		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
intron-intron	ENST00000468311	ENST00000482525		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
intron-intron	ENST00000468311	ENST00000485280		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
intron-5UTR	ENST00000368010	ENST00000265062		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
intron-intron	ENST00000368010	ENST00000482525		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
intron-intron	ENST00000368010	ENST00000485280		ChiTaRS3.1			DA679943	PFDN2	chr1	161070449	-	RAB7A	chr3	128444992	+
Frame-shit	ENST00000394249	ENST00000394258		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000394249	ENST00000555155		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000394249	ENST00000556774		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000394249	ENST00000556618		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000361919	ENST00000394258		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000361919	ENST00000555155		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000361919	ENST00000556774		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000361919	ENST00000556618		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000361188	ENST00000394258		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000361188	ENST00000555155		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000361188	ENST00000556774		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000361188	ENST00000556618		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000442656	ENST00000394258		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000442656	ENST00000555155		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000442656	ENST00000556774		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5CDS-3UTR	ENST00000442656	ENST00000556618		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5UTR-3CDS	ENST00000556129	ENST00000394258		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5UTR-3CDS	ENST00000556129	ENST00000555155		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5UTR-3UTR	ENST00000556129	ENST00000556774		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
5UTR-3UTR	ENST00000556129	ENST00000556618		ChiTaRS3.1			DA657603	PRC1	chr15	91537637	-	RCCD1	chr15	91503128	+
Frame-shit	ENST00000292408	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
Frame-shit	ENST00000393648	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
Frame-shit	ENST00000502906	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
Frame-shit	ENST00000292410	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
intron-3CDS	ENST00000507708	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
Frame-shit	ENST00000393637	ENST00000318560		ChiTaRS3.1			BF760653	FGFR4	chr5	176520440	-	ABL1	chr9	133760182	+
intron-intron	ENST00000534862	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000534862	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000534862	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000538448	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375862	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000520553	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000518730	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000373203		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000344849		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000375852	ENST00000480266		ChiTaRS3.1			BI026773	HCK	chr20	30669564	-	ENG	chr9	130588650	+
intron-intron	ENST00000344749	ENST00000344749		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000344749	ENST00000262965		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000344749	ENST00000453954		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000344749	ENST00000395423		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000344749	ENST00000588136		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000262965	ENST00000344749		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000262965	ENST00000262965		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000262965	ENST00000453954		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000262965	ENST00000395423		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000262965	ENST00000588136		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000453954	ENST00000344749		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000453954	ENST00000262965		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000453954	ENST00000453954		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000453954	ENST00000395423		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000453954	ENST00000588136		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000395423	ENST00000344749		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000395423	ENST00000262965		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000395423	ENST00000453954		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000395423	ENST00000395423		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000395423	ENST00000588136		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000588136	ENST00000344749		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000588136	ENST00000262965		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000588136	ENST00000453954		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000588136	ENST00000395423		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-intron	ENST00000588136	ENST00000588136		ChiTaRS3.1			AA773093	TCF3	chr19	1627299	+	TCF3	chr19	1622708	-
intron-3UTR	ENST00000341500	ENST00000336967		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000341500	ENST00000391771		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000341500	ENST00000391770		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000341500	ENST00000391769		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-intron	ENST00000341500	ENST00000391768		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000302850	ENST00000336967		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000302850	ENST00000391771		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000302850	ENST00000391770		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-3UTR	ENST00000302850	ENST00000391769		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-intron	ENST00000302850	ENST00000391768		ChiTaRS3.1			BF854183	INSR	chr19	7215997	+	MYADM	chr19	54379275	-
intron-intron	ENST00000302640	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000302640	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000302640	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000354582	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000354582	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000354582	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000423119	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000423119	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000423119	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000456211	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000456211	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000456211	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000357086	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000357086	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000357086	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000544951	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000544951	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000544951	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000443694	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000443694	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000443694	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000463980	ENST00000276440		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000463980	ENST00000410074		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-intron	ENST00000463980	ENST00000481100		ChiTaRS3.1			AW904353	ITPR1	chr3	4832171	+	DOCK5	chr8	25232670	-
intron-3CDS	ENST00000475338	ENST00000344400		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000475338	ENST00000423565		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000475338	ENST00000354475		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-intron	ENST00000475338	ENST00000485942		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000367595	ENST00000344400		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000367595	ENST00000423565		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000367595	ENST00000354475		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-intron	ENST00000367595	ENST00000485942		ChiTaRS3.1			BG765283	ACBD6	chr1	180366677	-	WDR91	chr7	134878022	-
intron-3CDS	ENST00000332981	ENST00000249269		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000332981	ENST00000428154		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000332981	ENST00000420236		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000555082	ENST00000249269		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000555082	ENST00000428154		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000555082	ENST00000420236		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000556245	ENST00000249269		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000556245	ENST00000428154		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
intron-3CDS	ENST00000556245	ENST00000420236		ChiTaRS3.1			BE929033	PRKCH	chr14	61814591	+	PMPCB	chr7	102940745	-
3UTR-3UTR	ENST00000318008	ENST00000318008		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
3UTR-intron	ENST00000318008	ENST00000433206		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
3UTR-3UTR	ENST00000318008	ENST00000435347		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
intron-3UTR	ENST00000433206	ENST00000318008		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
intron-intron	ENST00000433206	ENST00000433206		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
intron-3UTR	ENST00000433206	ENST00000435347		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
3UTR-3UTR	ENST00000435347	ENST00000318008		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
3UTR-intron	ENST00000435347	ENST00000433206		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
3UTR-3UTR	ENST00000435347	ENST00000435347		ChiTaRS3.1			BQ941743	LASP1	chr17	37076672	+	LASP1	chr17	37075916	+
intron-3CDS	ENST00000320201	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000320201	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000320201	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000320201	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000320201	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000392428	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000392428	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000392428	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000392428	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000392428	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000280562	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000280562	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000280562	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000280562	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000280562	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000542749	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000542749	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000542749	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000542749	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000542749	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000546049	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000546049	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000546049	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000546049	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000546049	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000451868	ENST00000535458		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000451868	ENST00000290158		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000451868	ENST00000540627		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3CDS	ENST00000451868	ENST00000537679		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-intron	ENST00000451868	ENST00000577918		ChiTaRS3.1			AW383373	PITPNM2	chr12	123585318	-	KPNB1	chr17	45754383	+
intron-3UTR	ENST00000326956	ENST00000372870		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000326956	ENST00000300456		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000417664	ENST00000372870		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000417664	ENST00000300456		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000371320	ENST00000372870		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000371320	ENST00000300456		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000371319	ENST00000372870		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000371319	ENST00000300456		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000357475	ENST00000372870		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
intron-3UTR	ENST00000357475	ENST00000300456		ChiTaRS3.1			BU623643	SSBP3	chr1	54692389	+	SLC27A4	chr9	131123242	-
3UTR-intron	ENST00000500949	ENST00000335244		ChiTaRS3.1			AI469343	OIP5-AS1	chr15	41591060	-	SLC36A2	chr5	150713380	+
3UTR-intron	ENST00000500949	ENST00000450886		ChiTaRS3.1			AI469343	OIP5-AS1	chr15	41591060	-	SLC36A2	chr5	150713380	+
3UTR-intron	ENST00000500949	ENST00000521967		ChiTaRS3.1			AI469343	OIP5-AS1	chr15	41591060	-	SLC36A2	chr5	150713380	+
intron-3CDS	ENST00000249269	ENST00000383737		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000249269	ENST00000395734		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000249269	ENST00000426837		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000249269	ENST00000360240		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000439356		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000264724		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000420772		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000441748		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000462206		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000249269	ENST00000434267		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000428154	ENST00000383737		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000428154	ENST00000395734		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000428154	ENST00000426837		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000428154	ENST00000360240		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000439356		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000264724		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000420772		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000441748		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000462206		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000428154	ENST00000434267		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000420236	ENST00000383737		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000420236	ENST00000395734		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000420236	ENST00000426837		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-3CDS	ENST00000420236	ENST00000360240		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000439356		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000264724		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000420772		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000441748		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000462206		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
intron-intron	ENST00000420236	ENST00000434267		ChiTaRS3.1			AW993843	PMPCB	chr7	102960127	+	MAP4	chr3	47912572	+
3UTR-3UTR	ENST00000261879	ENST00000261735		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
3UTR-3UTR	ENST00000261879	ENST00000455836		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
3UTR-3UTR	ENST00000261879	ENST00000546477		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000380343	ENST00000261735		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000380343	ENST00000455836		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000380343	ENST00000546477		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000560716	ENST00000261735		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000560716	ENST00000455836		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-3UTR	ENST00000560716	ENST00000546477		ChiTaRS3.1			BP398723	APH1B	chr15	63599615	-	ERP29	chr12	112460532	+
intron-intron	ENST00000533902	ENST00000504734		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000533902	ENST00000415618		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-3UTR	ENST00000533902	ENST00000452673		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-3UTR	ENST00000533902	ENST00000247461		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000533902	ENST00000512607		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000533902	ENST00000503126		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000280258	ENST00000504734		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000280258	ENST00000415618		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-3UTR	ENST00000280258	ENST00000452673		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-3UTR	ENST00000280258	ENST00000247461		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000280258	ENST00000512607		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000280258	ENST00000503126		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000441050	ENST00000504734		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000441050	ENST00000415618		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-3UTR	ENST00000441050	ENST00000452673		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-3UTR	ENST00000441050	ENST00000247461		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000441050	ENST00000512607		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
3UTR-intron	ENST00000441050	ENST00000503126		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000531521	ENST00000504734		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000531521	ENST00000415618		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-3UTR	ENST00000531521	ENST00000452673		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-3UTR	ENST00000531521	ENST00000247461		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000531521	ENST00000512607		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-intron	ENST00000531521	ENST00000503126		ChiTaRS3.1			CA448313	PRSS23	chr11	86519968	-	CANX	chr5	179156721	+
intron-3CDS	ENST00000367033	ENST00000367033		ChiTaRS3.1			DA812593	PLXNA2	chr1	208201435	-	PLXNA2	chr1	208212988	-
intron-intron	ENST00000367033	ENST00000483048		ChiTaRS3.1			DA812593	PLXNA2	chr1	208201435	-	PLXNA2	chr1	208212988	-
intron-3CDS	ENST00000483048	ENST00000367033		ChiTaRS3.1			DA812593	PLXNA2	chr1	208201435	-	PLXNA2	chr1	208212988	-
intron-intron	ENST00000483048	ENST00000483048		ChiTaRS3.1			DA812593	PLXNA2	chr1	208201435	-	PLXNA2	chr1	208212988	-
intron-3CDS	ENST00000460934	ENST00000430479		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000399357		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000420159		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000343495		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000242066		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000405192		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000405358		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000403527		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000405218		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-3CDS	ENST00000460934	ENST00000403685		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-5UTR	ENST00000460934	ENST00000476720		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000430479		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000399357		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000420159		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000343495		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000242066		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000405192		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000405358		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000403527		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000405218		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-3CDS	ENST00000367145	ENST00000403685		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
5UTR-5UTR	ENST00000367145	ENST00000476720		ChiTaRS3.1			EF632109	SLC45A3	chr1	205649522	-	ETV1	chr7	13978873	-
intron-intron	ENST00000261799	ENST00000396353		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000261799	ENST00000396355		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000261799	ENST00000396354		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000261799	ENST00000342673		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000261799	ENST00000571896		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000523456	ENST00000396353		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000523456	ENST00000396355		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000523456	ENST00000396354		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000523456	ENST00000342673		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
intron-intron	ENST00000523456	ENST00000571896		ChiTaRS3.1			DQ317513	PDGFRB	chr5	149508606	+	NDE1	chr16	15784639	-
Frame-shit	ENST00000326974	ENST00000326974		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
Frame-shit	ENST00000326974	ENST00000244670		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
Frame-shit	ENST00000326974	ENST00000332245		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
intron-3CDS	ENST00000244670	ENST00000326974		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
intron-3CDS	ENST00000244670	ENST00000244670		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
intron-3CDS	ENST00000244670	ENST00000332245		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
Frame-shit	ENST00000332245	ENST00000326974		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
Frame-shit	ENST00000332245	ENST00000244670		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
Frame-shit	ENST00000332245	ENST00000332245		ChiTaRS3.1			BF878063	KLHDC3	chr6	42985614	+	KLHDC3	chr6	42986385	-
intron-5UTR	ENST00000454482	ENST00000297338		ChiTaRS3.1			CD557703	DSCR9	chr21	38590292	-	RAD21	chr8	117879002	-
intron-intron	ENST00000454482	ENST00000523986		ChiTaRS3.1			CD557703	DSCR9	chr21	38590292	-	RAD21	chr8	117879002	-
intron-intron	ENST00000454482	ENST00000517749		ChiTaRS3.1			CD557703	DSCR9	chr21	38590292	-	RAD21	chr8	117879002	-
intron-intron	ENST00000454482	ENST00000518055		ChiTaRS3.1			CD557703	DSCR9	chr21	38590292	-	RAD21	chr8	117879002	-
intron-5UTR	ENST00000454482	ENST00000523547		ChiTaRS3.1			CD557703	DSCR9	chr21	38590292	-	RAD21	chr8	117879002	-
intron-3CDS	ENST00000370939	ENST00000370939		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000370939	ENST00000323557		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000370939	ENST00000244426		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-intron	ENST00000370939	ENST00000461222		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000323557	ENST00000370939		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000323557	ENST00000323557		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000323557	ENST00000244426		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-intron	ENST00000323557	ENST00000461222		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000244426	ENST00000370939		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000244426	ENST00000323557		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000244426	ENST00000244426		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-intron	ENST00000244426	ENST00000461222		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000461222	ENST00000370939		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000461222	ENST00000323557		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3CDS	ENST00000461222	ENST00000244426		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-intron	ENST00000461222	ENST00000461222		ChiTaRS3.1			AW418543	FBXO9	chr6	52957713	-	FBXO9	chr6	52938375	+
intron-3UTR	ENST00000397901	ENST00000397901		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000397901	ENST00000253475		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000397901	ENST00000535997		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000397901	ENST00000550102		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000397901	ENST00000547614		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000253475	ENST00000397901		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000253475	ENST00000253475		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000253475	ENST00000535997		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000253475	ENST00000550102		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000253475	ENST00000547614		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000535997	ENST00000397901		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000535997	ENST00000253475		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000535997	ENST00000535997		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000535997	ENST00000550102		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000535997	ENST00000547614		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000550102	ENST00000397901		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000550102	ENST00000253475		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000550102	ENST00000535997		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000550102	ENST00000550102		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000550102	ENST00000547614		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000547614	ENST00000397901		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000547614	ENST00000253475		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-3UTR	ENST00000547614	ENST00000535997		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000547614	ENST00000550102		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000547614	ENST00000547614		ChiTaRS3.1			BF798523	CHMP1A	chr16	89711292	+	CHMP1A	chr16	89711366	-
intron-intron	ENST00000566442	ENST00000566442		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-3UTR	ENST00000566442	ENST00000318010		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-intron	ENST00000566442	ENST00000440615		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
3UTR-intron	ENST00000318010	ENST00000566442		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
3UTR-3UTR	ENST00000318010	ENST00000318010		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
3UTR-intron	ENST00000318010	ENST00000440615		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-intron	ENST00000440615	ENST00000566442		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-3UTR	ENST00000440615	ENST00000318010		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-intron	ENST00000440615	ENST00000440615		ChiTaRS3.1			AW572233	GANC	chr15	42645790	-	GANC	chr15	42645704	+
intron-intron	ENST00000560305	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000560305	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000560305	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000560305	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000561011	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000561011	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000559911	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000559911	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558113	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558113	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000358005	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000358005	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000416810	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000416810	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558750	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558750	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-5UTR	ENST00000558871	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-intron	ENST00000558871	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000337620		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-5UTR	ENST00000560109	ENST00000396386		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000409747		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
5CDS-intron	ENST00000560109	ENST00000497498		ChiTaRS3.1			BP423123	C15orf57	chr15	40854180	-	CBX3	chr7	26241365	+
intron-3UTR	ENST00000383202	ENST00000267339		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000383202	ENST00000375758		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000383202	ENST00000489973		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000383202	ENST00000310847		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000236698	ENST00000267339		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000236698	ENST00000375758		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000236698	ENST00000489973		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000236698	ENST00000310847		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000434713	ENST00000267339		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000434713	ENST00000375758		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000434713	ENST00000489973		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000434713	ENST00000310847		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000480733	ENST00000267339		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000480733	ENST00000375758		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000480733	ENST00000489973		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000480733	ENST00000310847		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000536929	ENST00000267339		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3UTR	ENST00000536929	ENST00000375758		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000536929	ENST00000489973		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-intron	ENST00000536929	ENST00000310847		ChiTaRS3.1			DA441993	STAG1	chr3	136323227	-	ANKRD10	chr13	111531287	+
intron-3CDS	ENST00000286091	ENST00000375217		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-3CDS	ENST00000286091	ENST00000375226		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-3CDS	ENST00000286091	ENST00000375267		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-3CDS	ENST00000286091	ENST00000375254		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-intron	ENST00000286091	ENST00000375225		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-intron	ENST00000286091	ENST00000429347		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-intron	ENST00000286091	ENST00000375224		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-intron	ENST00000286091	ENST00000543981		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-5UTR	ENST00000286091	ENST00000467272		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
intron-intron	ENST00000286091	ENST00000375218		ChiTaRS3.1			BG015693	PDIA4	chr7	148709024	-	UBR4	chr1	19419932	+
3UTR-3UTR	ENST00000579649	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000579649	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000579649	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000579649	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
intron-3UTR	ENST00000582380	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
intron-3UTR	ENST00000582380	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
intron-intron	ENST00000582380	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
intron-intron	ENST00000582380	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000577222	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000577222	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000577222	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000577222	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000347512	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000347512	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000347512	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000347512	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000579446	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000579446	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000579446	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000579446	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000394580	ENST00000338244		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-3UTR	ENST00000394580	ENST00000379333		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000394580	ENST00000424750		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
3UTR-intron	ENST00000394580	ENST00000468355		ChiTaRS3.1			AI497603	RPL36	chr19	5691636	-	SLC23A2	chr20	4833667	+
5CDS-intron	ENST00000300289	ENST00000327171		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000560031		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000396509		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000543495		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000544523		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000559454		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000300289	ENST00000561014		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000327171		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000560031		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000396509		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000543495		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000544523		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000559454		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-intron	ENST00000469684	ENST00000561014		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000327171		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000560031		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000396509		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000543495		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000544523		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000559454		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
5CDS-intron	ENST00000538521	ENST00000561014		ChiTaRS3.1			BF355333	PDIA3	chr15	44061776	+	GALK2	chr15	49599337	+
intron-3UTR	ENST00000392313	ENST00000519374		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-3UTR	ENST00000392313	ENST00000519911		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-3UTR	ENST00000392313	ENST00000265093		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-intron	ENST00000392313	ENST00000517669		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-3UTR	ENST00000262815	ENST00000519374		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-3UTR	ENST00000262815	ENST00000519911		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-3UTR	ENST00000262815	ENST00000265093		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
intron-intron	ENST00000262815	ENST00000517669		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
3UTR-3UTR	ENST00000586189	ENST00000519374		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
3UTR-3UTR	ENST00000586189	ENST00000519911		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
3UTR-3UTR	ENST00000586189	ENST00000265093		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
3UTR-intron	ENST00000586189	ENST00000517669		ChiTaRS3.1			BI049643	MAU2	chr19	19432475	-	ATP6V0E1	chr5	172461600	+
3UTR-intron	ENST00000528780	ENST00000280527		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000528780	ENST00000473403		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000328221	ENST00000280527		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000328221	ENST00000473403		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000408968	ENST00000280527		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
3UTR-intron	ENST00000408968	ENST00000473403		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000525554	ENST00000280527		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000525554	ENST00000473403		ChiTaRS3.1			AI656093	IFITM1	chr11	315193	-	CRIM1	chr2	36686810	-
intron-intron	ENST00000356415	ENST00000346169		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000414031		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000392537		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000382330		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000350481		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000352767		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000427845		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000342981		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000319274		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000424196		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000411531		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000441154		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000434061		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000356415	ENST00000435046		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000346169		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000414031		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000392537		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000382330		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000350481		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000352767		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000427845		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000342981		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000319274		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000424196		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000411531		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000441154		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000434061		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000436150	ENST00000435046		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000346169		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000414031		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000392537		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000382330		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000350481		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000352767		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000427845		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000342981		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000319274		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000424196		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000411531		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000441154		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000434061		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000369709	ENST00000435046		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000346169		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000414031		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000392537		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000382330		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000350481		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000352767		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000427845		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000342981		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000319274		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000424196		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000411531		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000441154		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000434061		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000545460	ENST00000435046		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000346169		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000414031		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000392537		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000382330		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000350481		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000352767		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000427845		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000342981		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000319274		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000424196		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000411531		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000441154		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000434061		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000494982	ENST00000435046		ChiTaRS3.1			AK098133	RAP1A	chr1	112193650	+	EIF4G1	chr3	184045905	+
intron-intron	ENST00000461831	ENST00000449111		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000444489		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000458274		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000450989		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000452864		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000432696		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000425602		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000455777		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000461831	ENST00000413076		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000449111		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000444489		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000458274		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000450989		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000452864		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000432696		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000425602		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000455777		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000436535	ENST00000413076		ChiTaRS3.1			DR008013	ZNF385C	chr17	40183666	-	LINC00894	chrX	149335611	+
intron-intron	ENST00000357637	ENST00000367142		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000357637	ENST00000464938		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000400334	ENST00000367142		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000400334	ENST00000464938		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000593225	ENST00000367142		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000593225	ENST00000464938		ChiTaRS3.1			BQ366823	PIGN	chr18	59713055	-	NUCKS1	chr1	205715831	+
intron-intron	ENST00000380861	ENST00000393701		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000380861	ENST00000568461		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000380861	ENST00000288040		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000380861	ENST00000449317		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000454666	ENST00000393701		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000454666	ENST00000568461		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000454666	ENST00000288040		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000454666	ENST00000449317		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000466248	ENST00000393701		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000466248	ENST00000568461		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000466248	ENST00000288040		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000466248	ENST00000449317		ChiTaRS3.1			BI061823	WWC3	chrX	10073274	+	CLEC18A	chr16	70153006	-
intron-intron	ENST00000304425	ENST00000304425		ChiTaRS3.1			BI006543	MIR31HG	chr9	21550775	+	MIR31HG	chr9	21550929	-
intron-3UTR	ENST00000412585	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-3UTR	ENST00000425848	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-3UTR	ENST00000450871	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-3UTR	ENST00000359635	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-3UTR	ENST00000435618	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-3UTR	ENST00000421349	ENST00000341901		ChiTaRS3.1			BI041983	HLA-B	chr6	31322917	+	SBK1	chr16	28334121	+
intron-intron	ENST00000336755	ENST00000425241		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000336755	ENST00000323373		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000336755	ENST00000393102		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000336755	ENST00000406272		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000336755	ENST00000478572		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000534928	ENST00000425241		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000534928	ENST00000323373		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000534928	ENST00000393102		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000534928	ENST00000406272		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000534928	ENST00000478572		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000461038	ENST00000425241		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000461038	ENST00000323373		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000461038	ENST00000393102		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000461038	ENST00000406272		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000461038	ENST00000478572		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000322831	ENST00000425241		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000322831	ENST00000323373		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000322831	ENST00000393102		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000322831	ENST00000406272		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-intron	ENST00000322831	ENST00000478572		ChiTaRS3.1			M86103	ZCCHC7	chr9	37220137	+	NR2C2	chr3	15090374	-
intron-3CDS	ENST00000318080	ENST00000372546		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-3CDS	ENST00000318080	ENST00000406974		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-intron	ENST00000318080	ENST00000540102		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-3CDS	ENST00000464290	ENST00000372546		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-3CDS	ENST00000464290	ENST00000406974		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-intron	ENST00000464290	ENST00000540102		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-3CDS	ENST00000393384	ENST00000372546		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-3CDS	ENST00000393384	ENST00000406974		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-intron	ENST00000393384	ENST00000540102		ChiTaRS3.1			T12603	CRAT	chr9	131862545	+	DOLPP1	chr9	131847304	-
intron-intron	ENST00000360822	ENST00000533760		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360822	ENST00000397957		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360822	ENST00000316851		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360822	ENST00000401611		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000359309	ENST00000533760		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000359309	ENST00000397957		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000359309	ENST00000316851		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000359309	ENST00000401611		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000349780	ENST00000533760		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000349780	ENST00000397957		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000349780	ENST00000316851		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000349780	ENST00000401611		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360190	ENST00000533760		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360190	ENST00000397957		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360190	ENST00000316851		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000360190	ENST00000401611		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000480467	ENST00000533760		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000480467	ENST00000397957		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000480467	ENST00000316851		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-intron	ENST00000480467	ENST00000401611		ChiTaRS3.1			AW889793	CDK5RAP2	chr9	123225260	-	NCAM1	chr11	112947543	+
intron-3UTR	ENST00000249923	ENST00000249923		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000249923	ENST00000439561		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-intron	ENST00000249923	ENST00000526191		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000439561	ENST00000249923		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000439561	ENST00000439561		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-intron	ENST00000439561	ENST00000526191		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000526191	ENST00000249923		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000526191	ENST00000439561		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-intron	ENST00000526191	ENST00000526191		ChiTaRS3.1			BG393843	COPB1	chr11	14479328	+	COPB1	chr11	14479250	-
intron-3UTR	ENST00000255175	ENST00000587250		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000255175	ENST00000544533		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000342374	ENST00000587250		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000342374	ENST00000544533		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000541235	ENST00000587250		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000541235	ENST00000544533		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000468234	ENST00000587250		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
intron-3UTR	ENST00000468234	ENST00000544533		ChiTaRS3.1			BI037353	SERINC3	chr20	43133466	-	RND2	chr17	41180711	-
3UTR-intron	ENST00000286800	ENST00000434724		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000439887		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000563468		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000420576		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000286800	ENST00000564790		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000434724		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000439887		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000563468		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000420576		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
3UTR-intron	ENST00000399921	ENST00000564790		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000434724		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000439887		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000563468		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000420576		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
intron-intron	ENST00000462262	ENST00000564790		ChiTaRS3.1			BE814653	BACH1	chr21	30715699	+	GSPT1	chr16	11969612	+
5CDS-intron	ENST00000338702	ENST00000464611		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
5CDS-intron	ENST00000338702	ENST00000331789		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
5CDS-intron	ENST00000542639	ENST00000464611		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
5CDS-intron	ENST00000542639	ENST00000331789		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
intron-intron	ENST00000497485	ENST00000464611		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
intron-intron	ENST00000497485	ENST00000331789		ChiTaRS3.1			BF803193	MAOA	chrX	43601227	-	ACTB	chr7	5568016	-
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			JX266516	FLI1	chr11	128675063	+	EWSR1	chr22	29683875	+
intron-intron	ENST00000204726	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000204726	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000450791	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000456883	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000537452	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000545875	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000445552		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000337845		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000329240		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000573185		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000570550		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000336125		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000549904		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000550273		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000549665		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000534967	ENST00000553155		ChiTaRS3.1			BC048203	GOLGA3	chr12	133349843	-	ARL17A	chr17	1181892	-
intron-intron	ENST00000371837	ENST00000371837		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000371837	ENST00000487618		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000371837	ENST00000336233		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000371837	ENST00000456827		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000487618	ENST00000371837		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000487618	ENST00000487618		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000487618	ENST00000336233		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000487618	ENST00000456827		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000336233	ENST00000371837		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000336233	ENST00000487618		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000336233	ENST00000336233		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000336233	ENST00000456827		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000456827	ENST00000371837		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000456827	ENST00000487618		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000456827	ENST00000336233		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-5UTR	ENST00000456827	ENST00000456827		ChiTaRS3.1			BP306273	LIPA	chr10	90974244	-	LIPA	chr10	91011556	-
intron-intron	ENST00000426342	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000426342	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000426342	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000426342	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000426342	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399232	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399232	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399232	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399232	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399232	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399222	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399222	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399222	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399222	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000399222	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000357362	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000357362	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000357362	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000357362	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000357362	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000439988	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000439988	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000439988	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000439988	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000439988	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000472499	ENST00000577297		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000472499	ENST00000498979		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000472499	ENST00000500970		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000472499	ENST00000578923		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000472499	ENST00000530002		ChiTaRS3.1			DA362393	MDGA2	chr14	47886001	+	USP2-AS1	chr11	119293882	-
intron-intron	ENST00000556440	ENST00000502271		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000556440	ENST00000504924		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000556440	ENST00000510591		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000556440	ENST00000507646		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000553412	ENST00000502271		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000553412	ENST00000504924		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000553412	ENST00000510591		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000553412	ENST00000507646		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000581056	ENST00000502271		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000581056	ENST00000504924		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000581056	ENST00000510591		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000581056	ENST00000507646		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000577476	ENST00000502271		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000577476	ENST00000504924		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000577476	ENST00000510591		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-intron	ENST00000577476	ENST00000507646		ChiTaRS3.1			AW857583	CEP95	chr17	62528008	-	ARL15	chr5	53522409	-
intron-3CDS	ENST00000373248	ENST00000373248		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000373248	ENST00000307864		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-intron	ENST00000373248	ENST00000482166		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000307864	ENST00000373248		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000307864	ENST00000307864		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-intron	ENST00000307864	ENST00000482166		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000482166	ENST00000373248		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000482166	ENST00000307864		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-intron	ENST00000482166	ENST00000482166		ChiTaRS3.1			CB164713	AIFM2	chr10	71892565	+	AIFM2	chr10	71873977	-
intron-3CDS	ENST00000246802	ENST00000454682		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-3CDS	ENST00000246802	ENST00000550952		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000356769		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000552540		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000393891		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000548563		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000546392		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000246802	ENST00000551793		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-3CDS	ENST00000598681	ENST00000454682		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-3CDS	ENST00000598681	ENST00000550952		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000356769		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000552540		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000393891		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000548563		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000546392		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000598681	ENST00000551793		ChiTaRS3.1			BF439043	GLTSCR2	chr19	48259778	-	NACA	chr12	57115016	+
intron-intron	ENST00000316399	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000396356	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000352083	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000528252	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000527619	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000528429	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000533658	ENST00000368984		ChiTaRS3.1			BF380013	SOX6	chr11	16002281	-	HTRA1	chr10	124249313	+
intron-intron	ENST00000517913	ENST00000517913		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000517913	ENST00000435422		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000517913	ENST00000447401		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000517913	ENST00000337851		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000435422	ENST00000517913		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000435422	ENST00000435422		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000435422	ENST00000447401		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000435422	ENST00000337851		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000447401	ENST00000517913		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000447401	ENST00000435422		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000447401	ENST00000447401		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000447401	ENST00000337851		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000337851	ENST00000517913		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000337851	ENST00000435422		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000337851	ENST00000447401		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
intron-intron	ENST00000337851	ENST00000337851		ChiTaRS3.1			BF813573	SGCD	chr5	155322009	-	SGCD	chr5	155322138	+
Frame-shit	ENST00000332050	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332050	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332050	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332050	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332050	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000397938	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000397938	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000397938	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000397938	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000406548	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000406548	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000406548	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000406548	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000331029	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000331029	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000331029	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000331029	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000414183	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000414183	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000414183	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000414183	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000333395	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000333395	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000333395	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000333395	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398907		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398905		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000288319		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398897		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398911		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000398910		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000417133		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000442448		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
In-frame	ENST00000332035	ENST00000453032		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
Frame-shit	ENST00000332035	ENST00000398919		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332035	ENST00000429727		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
5CDS-intron	ENST00000332035	ENST00000485493		ChiTaRS3.1			S70593	EWSR1	chr22	29683124	+	ERG	chr21	39755845	-
3UTR-3UTR	ENST00000409262	ENST00000409262		ChiTaRS3.1			BF089803	TET3	chr2	74330045	+	TET3	chr2	74330200	-
intron-intron	ENST00000404771	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000404771	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000404771	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372440	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372440	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372440	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372443	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372443	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000372443	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286628	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286628	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286628	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286627	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286627	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000286627	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000354353	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000354353	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000354353	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000404857	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000404857	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000404857	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000406533	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000406533	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000406533	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000484507	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000484507	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000484507	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000481070	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000481070	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000481070	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000480683	ENST00000380345		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000480683	ENST00000515007		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000480683	ENST00000515349		ChiTaRS3.1			AI076783	KCNMA1	chr10	79123070	+	LHFPL2	chr5	77811774	+
intron-intron	ENST00000255977	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000255977	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000255977	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000255977	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000255977	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000255977	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000437223	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000437223	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000437223	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000437223	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000437223	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000437223	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000474576	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000474576	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000474576	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000474576	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000474576	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000474576	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000480552	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000480552	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000480552	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000480552	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000480552	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000480552	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000443720	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000443720	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000443720	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000443720	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000443720	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000443720	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000481705	ENST00000545168		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000481705	ENST00000376989		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000481705	ENST00000238018		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000481705	ENST00000376986		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-3UTR	ENST00000481705	ENST00000358399		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
intron-intron	ENST00000481705	ENST00000477618		ChiTaRS3.1			BF802793	MKRN1	chr7	140156384	+	GDA	chr9	74863922	-
In-frame	ENST00000278412	ENST00000278412		ChiTaRS3.1			BF899073	SSRP1	chr11	57099855	-	SSRP1	chr11	57099203	+
3UTR-intron	ENST00000589123	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
3UTR-intron	ENST00000589123	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000346156	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000346156	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000395111	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000395111	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000586919	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000586919	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000341919	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000341919	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000590282	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000590282	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000443272	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000443272	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000588839	ENST00000331555		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-intron	ENST00000588839	ENST00000469540		ChiTaRS3.1			AI624663	NFIC	chr19	3468954	-	C1orf186	chr1	206243898	+
intron-3CDS	ENST00000397887	ENST00000280886		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000397887	ENST00000381496		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000397887	ENST00000540204		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-3CDS	ENST00000330938	ENST00000280886		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000330938	ENST00000381496		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000330938	ENST00000540204		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-3CDS	ENST00000445724	ENST00000280886		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000445724	ENST00000381496		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000445724	ENST00000540204		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-3CDS	ENST00000397886	ENST00000280886		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000397886	ENST00000381496		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000397886	ENST00000540204		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-3CDS	ENST00000494690	ENST00000280886		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000494690	ENST00000381496		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000494690	ENST00000540204		ChiTaRS3.1			BC021583	PTTG1IP	chr21	46270527	+	DIP2C	chr10	395339	-
intron-intron	ENST00000406775	ENST00000379589		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000406775	ENST00000495922		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000342771	ENST00000379589		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000342771	ENST00000495922		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000403018	ENST00000379589		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000403018	ENST00000495922		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000489774	ENST00000379589		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-intron	ENST00000489774	ENST00000495922		ChiTaRS3.1			BF329183	AUTS2	chr7	69812081	+	LHFP	chr13	40045298	-
intron-3CDS	ENST00000323851	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000323851	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000354944	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000354944	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000521414	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000521414	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000537882	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000537882	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000414097	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000414097	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000518176	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000518176	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000522476	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000522476	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000518066	ENST00000415585		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
intron-3CDS	ENST00000518066	ENST00000372972		ChiTaRS3.1			DA515233	NDRG1	chr8	134274388	-	CSTF2	chrX	100079227	+
5CDS-intron	ENST00000598441	ENST00000598441		ChiTaRS3.1			BI054893	SNRNP70	chr19	49611572	-	SNRNP70	chr19	49611779	+
5CDS-3UTR	ENST00000598441	ENST00000221448		ChiTaRS3.1			BI054893	SNRNP70	chr19	49611572	-	SNRNP70	chr19	49611779	+
5CDS-intron	ENST00000221448	ENST00000598441		ChiTaRS3.1			BI054893	SNRNP70	chr19	49611572	-	SNRNP70	chr19	49611779	+
5CDS-3UTR	ENST00000221448	ENST00000221448		ChiTaRS3.1			BI054893	SNRNP70	chr19	49611572	-	SNRNP70	chr19	49611779	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW408943	MALAT1	chr11	65267546	+	MALAT1	chr11	65266564	+
intron-intron	ENST00000368301	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000368301	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000368301	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368301	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000361308	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000361308	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000361308	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000347559	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000347559	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000347559	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000368300	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000368300	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368300	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000368299	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000368299	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000368299	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000448611	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000448611	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000448611	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000368297	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000368297	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000368297	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000473598	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000473598	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000473598	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000392353	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-3UTR	ENST00000392353	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000392353	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000368301		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000361308		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000496738	ENST00000347559		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-3UTR	ENST00000496738	ENST00000368300		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000368299		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000448611		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000368297		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000473598		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000392353		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
3UTR-intron	ENST00000496738	ENST00000496738		ChiTaRS3.1			AI184403	LMNA	chr1	156108918	-	LMNA	chr1	156109572	-
intron-intron	ENST00000384838	ENST00000384838		ChiTaRS3.1			CB054593	LINC00461	chr5	87978963	+	LINC00461	chr5	87978952	-
intron-5UTR	ENST00000464611	ENST00000406875		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-5UTR	ENST00000464611	ENST00000428878		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-intron	ENST00000464611	ENST00000342645		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-5UTR	ENST00000331789	ENST00000406875		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-5UTR	ENST00000331789	ENST00000428878		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-intron	ENST00000331789	ENST00000342645		ChiTaRS3.1			BE828383	ACTB	chr7	5567674	+	HIPK2	chr7	139477503	+
intron-3UTR	ENST00000368704	ENST00000368704		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368704	ENST00000368706		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368704	ENST00000368703		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368704	ENST00000368705		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368704	ENST00000474991		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368706	ENST00000368704		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368706	ENST00000368706		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368706	ENST00000368703		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368706	ENST00000368705		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368706	ENST00000474991		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368703	ENST00000368704		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368703	ENST00000368706		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368703	ENST00000368703		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368703	ENST00000368705		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368703	ENST00000474991		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368705	ENST00000368704		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368705	ENST00000368706		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000368705	ENST00000368703		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368705	ENST00000368705		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000368705	ENST00000474991		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000474991	ENST00000368704		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000474991	ENST00000368706		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-3UTR	ENST00000474991	ENST00000368703		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000474991	ENST00000368705		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000474991	ENST00000474991		ChiTaRS3.1			AA578043	S100A16	chr1	153579577	-	S100A16	chr1	153579813	+
intron-intron	ENST00000299084	ENST00000299084		ChiTaRS3.1			AW898783	SPRED1	chr15	38558563	+	SPRED1	chr15	38551729	+
intron-intron	ENST00000299084	ENST00000561205		ChiTaRS3.1			AW898783	SPRED1	chr15	38558563	+	SPRED1	chr15	38551729	+
intron-intron	ENST00000561205	ENST00000299084		ChiTaRS3.1			AW898783	SPRED1	chr15	38558563	+	SPRED1	chr15	38551729	+
intron-intron	ENST00000561205	ENST00000561205		ChiTaRS3.1			AW898783	SPRED1	chr15	38558563	+	SPRED1	chr15	38551729	+
5UTR-intron	ENST00000468646	ENST00000309415		ChiTaRS3.1			DB027763	LINC00877	chr3	72108840	-	SH3RF3	chr2	110007525	-
intron-3CDS	ENST00000426077	ENST00000320476		ChiTaRS3.1			AW961173	TMEM185B	chr2	120978390	-	SCRIB	chr8	144874060	-
intron-3CDS	ENST00000426077	ENST00000356994		ChiTaRS3.1			AW961173	TMEM185B	chr2	120978390	-	SCRIB	chr8	144874060	-
intron-3CDS	ENST00000426077	ENST00000377533		ChiTaRS3.1			AW961173	TMEM185B	chr2	120978390	-	SCRIB	chr8	144874060	-
intron-intron	ENST00000426077	ENST00000546337		ChiTaRS3.1			AW961173	TMEM185B	chr2	120978390	-	SCRIB	chr8	144874060	-
Frame-shit	ENST00000253247	ENST00000232888		ChiTaRS3.1			CN302773	NOL11	chr17	65717602	+	RRP9	chr3	51967543	-
intron-3CDS	ENST00000581966	ENST00000232888		ChiTaRS3.1			CN302773	NOL11	chr17	65717602	+	RRP9	chr3	51967543	-
5UTR-3CDS	ENST00000535137	ENST00000232888		ChiTaRS3.1			CN302773	NOL11	chr17	65717602	+	RRP9	chr3	51967543	-
intron-intron	ENST00000248054	ENST00000248054		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000248054	ENST00000596802		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000248054	ENST00000379803		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000248054	ENST00000595541		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000248054	ENST00000594235		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000596802	ENST00000248054		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000596802	ENST00000596802		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000596802	ENST00000379803		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000596802	ENST00000595541		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000596802	ENST00000594235		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000379803	ENST00000248054		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000379803	ENST00000596802		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000379803	ENST00000379803		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000379803	ENST00000595541		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000379803	ENST00000594235		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000595541	ENST00000248054		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000595541	ENST00000596802		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000595541	ENST00000379803		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000595541	ENST00000595541		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000595541	ENST00000594235		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000594235	ENST00000248054		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000594235	ENST00000596802		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000594235	ENST00000379803		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000594235	ENST00000595541		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000594235	ENST00000594235		ChiTaRS3.1			BF365213	SIN3B	chr19	16945267	+	SIN3B	chr19	16945347	-
intron-intron	ENST00000536534	ENST00000262554		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000536534	ENST00000482632		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000536534	ENST00000337841		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000427495	ENST00000262554		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000427495	ENST00000482632		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000427495	ENST00000337841		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000442594	ENST00000262554		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000442594	ENST00000482632		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000442594	ENST00000337841		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000474177	ENST00000262554		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000474177	ENST00000482632		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
intron-intron	ENST00000474177	ENST00000337841		ChiTaRS3.1			BF832583	PLD5	chr1	242655244	-	SPTLC1	chr9	94802759	-
5CDS-3UTR	ENST00000276390	ENST00000276390		ChiTaRS3.1			BF591113	ATP6V1B2	chr8	20077869	-	ATP6V1B2	chr8	20078119	-
Frame-shit	ENST00000289371	ENST00000289371		ChiTaRS3.1			AW081923	EIF5B	chr2	99980114	-	EIF5B	chr2	99985023	-
intron-5UTR	ENST00000530878	ENST00000476233		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-3UTR	ENST00000530878	ENST00000354667		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-intron	ENST00000530878	ENST00000356674		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-5UTR	ENST00000361897	ENST00000476233		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-3UTR	ENST00000361897	ENST00000354667		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-intron	ENST00000361897	ENST00000356674		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-5UTR	ENST00000493151	ENST00000476233		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-3UTR	ENST00000493151	ENST00000354667		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-intron	ENST00000493151	ENST00000356674		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-5UTR	ENST00000454693	ENST00000476233		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-3UTR	ENST00000454693	ENST00000354667		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-intron	ENST00000454693	ENST00000356674		ChiTaRS3.1			BI035463	NOS1AP	chr1	162098554	+	HNRNPA2B1	chr7	26230761	+
intron-intron	ENST00000593786	ENST00000253329		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-intron	ENST00000593786	ENST00000340881		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-intron	ENST00000374796	ENST00000253329		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-intron	ENST00000374796	ENST00000340881		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-intron	ENST00000359003	ENST00000253329		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-intron	ENST00000359003	ENST00000340881		ChiTaRS3.1			BF985843	NCOA6	chr20	33335528	-	PPIL4	chr6	149836893	-
intron-5UTR	ENST00000543067	ENST00000541509		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-5UTR	ENST00000543067	ENST00000265382		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-intron	ENST00000543067	ENST00000474356		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-5UTR	ENST00000425654	ENST00000541509		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-5UTR	ENST00000425654	ENST00000265382		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-intron	ENST00000425654	ENST00000474356		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-5UTR	ENST00000279451	ENST00000541509		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-5UTR	ENST00000279451	ENST00000265382		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-intron	ENST00000279451	ENST00000474356		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-5UTR	ENST00000379510	ENST00000541509		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-5UTR	ENST00000379510	ENST00000265382		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
3UTR-intron	ENST00000379510	ENST00000474356		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-5UTR	ENST00000485012	ENST00000541509		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-5UTR	ENST00000485012	ENST00000265382		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-intron	ENST00000485012	ENST00000474356		ChiTaRS3.1			X92493	CNKSR2	chrX	21672665	+	PIP5K1B	chr9	71320616	+
intron-3UTR	ENST00000369534	ENST00000369534		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000369534	ENST00000413259		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000369534	ENST00000393531		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000369534	ENST00000462825		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000413259	ENST00000369534		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000413259	ENST00000413259		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000413259	ENST00000393531		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000413259	ENST00000462825		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000393531	ENST00000369534		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000393531	ENST00000413259		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000393531	ENST00000393531		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000393531	ENST00000462825		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000462825	ENST00000369534		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000462825	ENST00000413259		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000462825	ENST00000393531		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-intron	ENST00000462825	ENST00000462825		ChiTaRS3.1			BF086593	MPP1	chrX	154007316	+	MPP1	chrX	154007106	-
intron-3UTR	ENST00000285930	ENST00000422843		ChiTaRS3.1			AV705293	AKR1B1	chr7	134130004	-	ITK	chr5	156679822	-
intron-3UTR	ENST00000285930	ENST00000519749		ChiTaRS3.1			AV705293	AKR1B1	chr7	134130004	-	ITK	chr5	156679822	-
intron-3UTR	ENST00000489022	ENST00000422843		ChiTaRS3.1			AV705293	AKR1B1	chr7	134130004	-	ITK	chr5	156679822	-
intron-3UTR	ENST00000489022	ENST00000519749		ChiTaRS3.1			AV705293	AKR1B1	chr7	134130004	-	ITK	chr5	156679822	-
intron-intron	ENST00000375643	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375643	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375629	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375629	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000443024	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000443024	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000447699	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000447699	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375627	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000375627	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000474340	ENST00000409535		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
intron-intron	ENST00000474340	ENST00000296477		ChiTaRS3.1			BF360063	IARS	chr9	95054808	+	RAD54L2	chr3	51583284	+
3UTR-3UTR	ENST00000331320	ENST00000331320		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000331320	ENST00000406191		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000331320	ENST00000405646		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000331320	ENST00000435036		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000406191	ENST00000331320		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000406191	ENST00000406191		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000406191	ENST00000405646		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000406191	ENST00000435036		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000405646	ENST00000331320		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000405646	ENST00000406191		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000405646	ENST00000405646		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000405646	ENST00000435036		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000435036	ENST00000331320		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000435036	ENST00000406191		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000435036	ENST00000405646		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000435036	ENST00000435036		ChiTaRS3.1			EC505603	MTA1	chr14	105936993	+	MTA1	chr14	105936971	-
3UTR-3UTR	ENST00000456758	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000457378	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000389574	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000452783	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000405266	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000401592	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000403868	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-3UTR	ENST00000425407	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000469755	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
intron-3UTR	ENST00000413514	ENST00000252242		ChiTaRS3.1			BU607503	SUN1	chr7	914482	-	KRT5	chr12	52908494	-
3UTR-intron	ENST00000336325	ENST00000298834		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000426438		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000314845		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000533727		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000534300		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000458649		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000528950		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000336325	ENST00000529963		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000298834		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000426438		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000314845		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000533727		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000534300		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000458649		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000528950		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000360596	ENST00000529963		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000298834		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000426438		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000314845		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000533727		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000534300		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000458649		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000528950		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000253382	ENST00000529963		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000298834		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000426438		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000314845		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000533727		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000534300		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000458649		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000528950		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
3UTR-intron	ENST00000476922	ENST00000529963		ChiTaRS3.1			BF763653	ACSS2	chr20	33515240	+	AMBRA1	chr11	46614870	+
intron-3CDS	ENST00000578921	ENST00000469230		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000578921	ENST00000356709		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000578921	ENST00000352867		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000578921	ENST00000482536		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000578921	ENST00000432533		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000578921	ENST00000416795		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000469230		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000356709		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000352867		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000482536		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000432533		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000577284	ENST00000416795		ChiTaRS3.1			BG998433	RAB31	chr18	9715194	+	BTN2A2	chr6	26384076	-
intron-3CDS	ENST00000369146	ENST00000254663		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369146	ENST00000373332		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369146	ENST00000555827		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369146	ENST00000409736		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369146	ENST00000422984		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-intron	ENST00000369146	ENST00000429612		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-intron	ENST00000369146	ENST00000480859		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369145	ENST00000254663		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369145	ENST00000373332		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369145	ENST00000555827		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369145	ENST00000409736		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-3CDS	ENST00000369145	ENST00000422984		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-intron	ENST00000369145	ENST00000429612		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
intron-intron	ENST00000369145	ENST00000480859		ChiTaRS3.1			BQ339693	SV2A	chr1	149878219	-	SCLY	chr2	238991969	+
3UTR-3UTR	ENST00000369308	ENST00000238994		ChiTaRS3.1			AW893933	LIX1L	chr1	145501110	+	PPP1R3C	chr10	93388404	+
intron-3UTR	ENST00000329399	ENST00000358506		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000329399	ENST00000296122		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000329399	ENST00000395366		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000477757	ENST00000358506		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000477757	ENST00000296122		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000477757	ENST00000395366		ChiTaRS3.1			BP386903	PDLIM1	chr10	97007471	+	PPP1CB	chr2	29023654	+
intron-3UTR	ENST00000376747	ENST00000286298		ChiTaRS3.1			CV414163	UGGT2	chr13	96685524	+	SLC26A2	chr5	149363188	-
intron-3UTR	ENST00000376714	ENST00000286298		ChiTaRS3.1			CV414163	UGGT2	chr13	96685524	+	SLC26A2	chr5	149363188	-
intron-3UTR	ENST00000397618	ENST00000286298		ChiTaRS3.1			CV414163	UGGT2	chr13	96685524	+	SLC26A2	chr5	149363188	-
intron-3UTR	ENST00000467305	ENST00000286298		ChiTaRS3.1			CV414163	UGGT2	chr13	96685524	+	SLC26A2	chr5	149363188	-
intron-3UTR	ENST00000376712	ENST00000286298		ChiTaRS3.1			CV414163	UGGT2	chr13	96685524	+	SLC26A2	chr5	149363188	-
intron-intron	ENST00000262241	ENST00000262241		ChiTaRS3.1			BE155913	RCOR1	chr14	103134383	+	RCOR1	chr14	103134503	-
intron-intron	ENST00000262241	ENST00000570597		ChiTaRS3.1			BE155913	RCOR1	chr14	103134383	+	RCOR1	chr14	103134503	-
intron-intron	ENST00000570597	ENST00000262241		ChiTaRS3.1			BE155913	RCOR1	chr14	103134383	+	RCOR1	chr14	103134503	-
intron-intron	ENST00000570597	ENST00000570597		ChiTaRS3.1			BE155913	RCOR1	chr14	103134383	+	RCOR1	chr14	103134503	-
intron-3UTR	ENST00000393533	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000393533	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000393533	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000393533	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000393533	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000393533	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000393533	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372814	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000372814	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000351030	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000351030	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000604420	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000604420	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000535026	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000535026	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000448249	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000448249	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000393527	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000393527	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000434106	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000434106	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000546203	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000546203	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000372791	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-intron	ENST00000372791	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000372807	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000372807	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000270189		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000429089		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000220809		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000352041		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000519510		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-3UTR	ENST00000444119	ENST00000429710		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
5CDS-intron	ENST00000444119	ENST00000524009		ChiTaRS3.1			BG990023	ODF2	chr9	131262408	-	PLAT	chr8	42033398	+
intron-3UTR	ENST00000544798	ENST00000542454		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000554311		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000306005		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000544798	ENST00000539359		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000542454		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000554311		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000306005		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000238156	ENST00000539359		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000542454		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000554311		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000306005		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545135	ENST00000539359		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000542454		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000554311		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000306005		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3UTR	ENST00000545891	ENST00000539359		ChiTaRS3.1			AA738243	CCDC92	chr12	124421131	+	BDKRB2	chr14	96707934	-
intron-3CDS	ENST00000390237	ENST00000390237		ChiTaRS3.1			AA804693	IGKC	chr2	89156987	+	IGKC	chr2	89156925	-
intron-intron	ENST00000275034	ENST00000275034		ChiTaRS3.1			AV730623	PHIP	chr6	79699862	+	PHIP	chr6	79699811	-
intron-intron	ENST00000275034	ENST00000479165		ChiTaRS3.1			AV730623	PHIP	chr6	79699862	+	PHIP	chr6	79699811	-
intron-intron	ENST00000479165	ENST00000275034		ChiTaRS3.1			AV730623	PHIP	chr6	79699862	+	PHIP	chr6	79699811	-
intron-intron	ENST00000479165	ENST00000479165		ChiTaRS3.1			AV730623	PHIP	chr6	79699862	+	PHIP	chr6	79699811	-
intron-3CDS	ENST00000320631	ENST00000464873		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000320631	ENST00000322623		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000320631	ENST00000417360		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-intron	ENST00000320631	ENST00000480616		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000359393	ENST00000464873		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000359393	ENST00000322623		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000359393	ENST00000417360		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-intron	ENST00000359393	ENST00000480616		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000488711	ENST00000464873		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000488711	ENST00000322623		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-3CDS	ENST00000488711	ENST00000417360		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
intron-intron	ENST00000488711	ENST00000480616		ChiTaRS3.1			BC004503	EHD1	chr11	64621138	+	RUVBL1	chr3	127816322	-
3UTR-3UTR	ENST00000328111	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000328111	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000328111	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-intron	ENST00000328111	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000328111	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000348286	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000348286	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000348286	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-intron	ENST00000348286	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000348286	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000353855	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000353855	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000353855	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-intron	ENST00000353855	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000353855	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000443239	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000443239	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000443239	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-intron	ENST00000443239	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000443239	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000344505	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000344505	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000344505	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-intron	ENST00000344505	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000344505	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000375623	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000375623	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000375623	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-intron	ENST00000375623	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000375623	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000456297	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000456297	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000456297	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-intron	ENST00000456297	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000456297	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000201963	ENST00000375751		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000201963	ENST00000375754		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000201963	ENST00000375747		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-intron	ENST00000201963	ENST00000476708		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
3UTR-3UTR	ENST00000201963	ENST00000375746		ChiTaRS3.1			AW794433	DNMT3B	chr20	31396615	+	SYK	chr9	93657968	+
intron-3UTR	ENST00000432825	ENST00000347330		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000432825	ENST00000413209		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000432825	ENST00000338641		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000403435		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000432825	ENST00000361452		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000403999		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000334961		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000353887		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000361166		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000397789		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000432825	ENST00000361676		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000541829	ENST00000347330		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000541829	ENST00000413209		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000541829	ENST00000338641		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000403435		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000541829	ENST00000361452		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000403999		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000334961		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000353887		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000361166		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000397789		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000541829	ENST00000361676		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000543968	ENST00000347330		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000543968	ENST00000413209		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000543968	ENST00000338641		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000403435		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-3UTR	ENST00000543968	ENST00000361452		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000403999		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000334961		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000353887		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000361166		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000397789		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000543968	ENST00000361676		ChiTaRS3.1			BC071653	FBXO10	chr9	37535714	-	NF2	chr22	30093811	+
intron-intron	ENST00000033079	ENST00000264433		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000033079	ENST00000379346		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000033079	ENST00000505445		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000425075	ENST00000264433		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000425075	ENST00000379346		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000425075	ENST00000505445		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000420893	ENST00000264433		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000420893	ENST00000379346		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000420893	ENST00000505445		ChiTaRS3.1			BI056653	FAM13B	chr5	137317967	+	FNIP2	chr4	159811962	+
intron-intron	ENST00000372970	ENST00000369797		ChiTaRS3.1			BE084803	OSER1	chr20	42835675	-	PDCD11	chr10	105175774	-
intron-intron	ENST00000372970	ENST00000490787		ChiTaRS3.1			BE084803	OSER1	chr20	42835675	-	PDCD11	chr10	105175774	-
intron-intron	ENST00000255174	ENST00000369797		ChiTaRS3.1			BE084803	OSER1	chr20	42835675	-	PDCD11	chr10	105175774	-
intron-intron	ENST00000255174	ENST00000490787		ChiTaRS3.1			BE084803	OSER1	chr20	42835675	-	PDCD11	chr10	105175774	-
5CDS-3UTR	ENST00000338970	ENST00000368704		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-3UTR	ENST00000338970	ENST00000368706		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-3UTR	ENST00000338970	ENST00000368703		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-intron	ENST00000338970	ENST00000368705		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-intron	ENST00000338970	ENST00000474991		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-3UTR	ENST00000396203	ENST00000368704		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-3UTR	ENST00000396203	ENST00000368706		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-3UTR	ENST00000396203	ENST00000368703		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-intron	ENST00000396203	ENST00000368705		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
5CDS-intron	ENST00000396203	ENST00000474991		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
3UTR-3UTR	ENST00000416518	ENST00000368704		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
3UTR-3UTR	ENST00000416518	ENST00000368706		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
3UTR-3UTR	ENST00000416518	ENST00000368703		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
3UTR-intron	ENST00000416518	ENST00000368705		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
3UTR-intron	ENST00000416518	ENST00000474991		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-3UTR	ENST00000461368	ENST00000368704		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-3UTR	ENST00000461368	ENST00000368706		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-3UTR	ENST00000461368	ENST00000368703		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-intron	ENST00000461368	ENST00000368705		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-intron	ENST00000461368	ENST00000474991		ChiTaRS3.1			BU630143	RPL14	chr3	40503534	-	S100A16	chr1	153579639	+
intron-intron	ENST00000252242	ENST00000393799		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000530427		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000393800		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000534534		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000524845		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000265637		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000524904		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000393801		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000265636		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000529710		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-intron	ENST00000252242	ENST00000527403		ChiTaRS3.1			BI016103	KRT5	chr12	52908785	+	PPP6R3	chr11	68291042	+
intron-3CDS	ENST00000263593	ENST00000263593		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000263593	ENST00000545756		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000263593	ENST00000525730		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000545756	ENST00000263593		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000545756	ENST00000545756		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000545756	ENST00000525730		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000525730	ENST00000263593		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3CDS	ENST00000525730	ENST00000545756		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-intron	ENST00000525730	ENST00000525730		ChiTaRS3.1			BG956433	SIAE	chr11	124506781	-	SIAE	chr11	124519623	-
intron-3UTR	ENST00000368679	ENST00000322088		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368679	ENST00000444322		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368679	ENST00000477989		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-3UTR	ENST00000368679	ENST00000462990		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368679	ENST00000473455		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-3UTR	ENST00000368676	ENST00000322088		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368676	ENST00000444322		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368676	ENST00000477989		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-3UTR	ENST00000368676	ENST00000462990		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000368676	ENST00000473455		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-3UTR	ENST00000467145	ENST00000322088		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000467145	ENST00000444322		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000467145	ENST00000477989		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-3UTR	ENST00000467145	ENST00000462990		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000467145	ENST00000473455		ChiTaRS3.1			AL709013	ADAM12	chr10	127829031	-	PPP2R1A	chr19	52729560	+
intron-intron	ENST00000269033	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000540801	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000324677	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000582084	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000590153	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000579954	ENST00000264162		ChiTaRS3.1			BF929873	SSH2	chr17	27995522	+	LCT	chr2	136554299	+
intron-intron	ENST00000584307	ENST00000297056		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000584307	ENST00000425398		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000584307	ENST00000436575		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000584307	ENST00000428902		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000584307	ENST00000421761		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000584307	ENST00000479922		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000297056		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000425398		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000436575		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000428902		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000421761		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000314574	ENST00000479922		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000297056		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000425398		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000436575		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000428902		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000421761		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577611	ENST00000479922		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000297056		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000425398		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000436575		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000428902		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000421761		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000577961	ENST00000479922		ChiTaRS3.1			BE927703	YES1	chr18	722376	-	DAGLB	chr7	6501879	-
intron-intron	ENST00000601048	ENST00000337554		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601048	ENST00000396265		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601048	ENST00000583777		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601048	ENST00000329563		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000509570	ENST00000337554		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000509570	ENST00000396265		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000509570	ENST00000583777		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000509570	ENST00000329563		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000593892	ENST00000337554		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000593892	ENST00000396265		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000593892	ENST00000583777		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000593892	ENST00000329563		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601419	ENST00000337554		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601419	ENST00000396265		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601419	ENST00000583777		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000601419	ENST00000329563		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000595615	ENST00000337554		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000595615	ENST00000396265		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000595615	ENST00000583777		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-intron	ENST00000595615	ENST00000329563		ChiTaRS3.1			BG739843	SEPW1	chr19	48282516	+	TSPO	chr22	43558288	+
intron-3CDS	ENST00000532317	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000532317	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000532317	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000526033	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000526033	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000526033	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000393346	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000393346	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000393346	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000528398	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000528398	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000528398	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000356360	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000356360	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000356360	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3CDS	ENST00000528411	ENST00000402696		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-5UTR	ENST00000528411	ENST00000264998		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-3UTR	ENST00000528411	ENST00000475382		ChiTaRS3.1			AF118063	PICALM	chr11	85700516	+	TF	chr3	133472515	+
intron-intron	ENST00000418931	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000418931	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000535465	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000471184	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411749	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000441981	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000474044	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000550949	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000383102	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000441857	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000551599	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
5CDS-intron	ENST00000548608	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000492916	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000454006	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411424	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548235	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000472101	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000425130	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000411558	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000481615	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000553195	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399500	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000399491	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548907	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000469961	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000415996	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000447783	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000548074	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000491972	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000433800	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000444931	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000552574	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000418931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000535465		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000471184		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000411749		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000441981		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000474044		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000550949		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000383102		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000441857		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000551599		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000548608		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000492916		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000454006		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000411424		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000548235		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000472101		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000425130		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000411558		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000481615		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000553195		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000399500		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000399491		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000548907		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000469961		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000415996		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000447783		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000548074		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000491972		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000433800		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000444931		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000552574		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
intron-intron	ENST00000461155	ENST00000461155		ChiTaRS3.1			BF927723	HLA-DPB1	chr6	4497732	+	HLA-DPB1	chr6	4497058	-
3UTR-3UTR	ENST00000521381	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521381	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521381	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000521381	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000521381	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521381	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521381	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521381	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000521657	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521657	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521657	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000521657	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000521657	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521657	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521657	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000521657	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-3UTR	ENST00000517643	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000517643	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000517643	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-3UTR	ENST00000517643	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-3UTR	ENST00000517643	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000517643	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000517643	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000517643	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000274335	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000274335	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000274335	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000274335	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000274335	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000274335	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000274335	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000274335	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000396611	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000396611	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000396611	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000396611	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000396611	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000396611	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000396611	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000396611	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000320694	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000320694	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000320694	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000320694	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000320694	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000320694	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000320694	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000320694	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000336483	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000336483	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000336483	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000336483	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000336483	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000336483	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000336483	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000336483	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000523872	ENST00000521381		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000523872	ENST00000521657		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000523872	ENST00000517643		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000523872	ENST00000274335		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-3UTR	ENST00000523872	ENST00000396611		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000523872	ENST00000320694		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000523872	ENST00000336483		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
3UTR-intron	ENST00000523872	ENST00000523872		ChiTaRS3.1			BU742563	PIK3R1	chr5	67594299	-	PIK3R1	chr5	67596280	-
intron-intron	ENST00000367328	ENST00000374580		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000367328	ENST00000374574		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000367328	ENST00000479069		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000358517	ENST00000374580		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000358517	ENST00000374574		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000358517	ENST00000479069		ChiTaRS3.1			BG005633	PLEKHG1	chr6	151070456	+	BMPR2	chr2	203267207	+
intron-intron	ENST00000327495	ENST00000187910		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000402603		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000292125		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000327495	ENST00000601833		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000187910		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000402603		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000292125		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000595140	ENST00000601833		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000187910		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000402603		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000292125		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000490592	ENST00000601833		ChiTaRS3.1			BE928953	PSG3	chr19	43233410	+	PSG6	chr19	43519369	-
intron-intron	ENST00000244769	ENST00000244769		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000244769	ENST00000436367		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000244769	ENST00000467008		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000244769		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000436367		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000436367	ENST00000467008		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000244769		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000436367		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-intron	ENST00000467008	ENST00000467008		ChiTaRS3.1			AK021743	ATXN1	chr6	16671061	-	ATXN1	chr6	16691677	-
intron-5UTR	ENST00000308482	ENST00000394464		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000343796		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000415690		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000424646		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000504572		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000394466		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000231509		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000308482	ENST00000416954		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000308482	ENST00000503201		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000308482	ENST00000504336		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000394464		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000343796		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000415690		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000424646		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000504572		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000394466		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000231509		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000468950	ENST00000416954		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000468950	ENST00000503201		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000468950	ENST00000504336		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000394464		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000343796		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000415690		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000424646		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000504572		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000394466		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000231509		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000289175	ENST00000416954		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000289175	ENST00000503201		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000289175	ENST00000504336		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000394464		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000343796		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000415690		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000424646		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000504572		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000394466		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000231509		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000244815	ENST00000416954		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000244815	ENST00000503201		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000244815	ENST00000504336		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000394464		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000343796		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000415690		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000424646		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000504572		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000394466		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000231509		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000392000	ENST00000416954		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-5UTR	ENST00000392000	ENST00000503201		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
intron-intron	ENST00000392000	ENST00000504336		ChiTaRS3.1			DW412083	LRRFIP1	chr2	238592138	+	NR3C1	chr5	142780419	-
5UTR-5UTR	ENST00000543155	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
5UTR-5UTR	ENST00000543155	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
3UTR-5UTR	ENST00000542150	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
3UTR-5UTR	ENST00000542150	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000229251	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000229251	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000539735	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000539735	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000538410	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000538410	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000534947	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000534947	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000534877	ENST00000313269		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
intron-5UTR	ENST00000534877	ENST00000395068		ChiTaRS3.1			BC007843	COPS7A	chr12	6833222	-	GRINA	chr8	145064276	+
5CDS-intron	ENST00000354179	ENST00000390548		ChiTaRS3.1			BI013883	NSD1	chr5	176719010	+	IGHG1	chr14	106174787	+
5CDS-intron	ENST00000439151	ENST00000390548		ChiTaRS3.1			BI013883	NSD1	chr5	176719010	+	IGHG1	chr14	106174787	+
5CDS-intron	ENST00000347982	ENST00000390548		ChiTaRS3.1			BI013883	NSD1	chr5	176719010	+	IGHG1	chr14	106174787	+
5CDS-intron	ENST00000361032	ENST00000390548		ChiTaRS3.1			BI013883	NSD1	chr5	176719010	+	IGHG1	chr14	106174787	+
intron-intron	ENST00000511258	ENST00000390548		ChiTaRS3.1			BI013883	NSD1	chr5	176719010	+	IGHG1	chr14	106174787	+
intron-intron	ENST00000491186	ENST00000449359		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000491186	ENST00000564441		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000491186	ENST00000441236		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000491186	ENST00000348497		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000491186	ENST00000339507		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000325318	ENST00000449359		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000325318	ENST00000564441		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000325318	ENST00000441236		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000325318	ENST00000348497		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000325318	ENST00000339507		ChiTaRS3.1			BE159383	TCTEX1D2	chr3	196044151	+	PRMT7	chr16	68353614	+
intron-intron	ENST00000356554	ENST00000356554		ChiTaRS3.1			AW894933	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000356554	ENST00000482811		ChiTaRS3.1			AW894933	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000356554		ChiTaRS3.1			AW894933	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
intron-intron	ENST00000482811	ENST00000482811		ChiTaRS3.1			AW894933	MAN1A2	chr1	117944806	-	MAN1A2	chr1	117963272	-
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			D14823	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-intron	ENST00000544440	ENST00000446450		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000544440	ENST00000354956		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000544440	ENST00000354449		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000544440	ENST00000469654		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000407578	ENST00000446450		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000407578	ENST00000354956		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000407578	ENST00000354449		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000407578	ENST00000469654		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000357337	ENST00000446450		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000357337	ENST00000354956		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000357337	ENST00000354449		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000357337	ENST00000469654		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000360084	ENST00000446450		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000360084	ENST00000354956		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000360084	ENST00000354449		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000360084	ENST00000469654		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000482517	ENST00000446450		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000482517	ENST00000354956		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000482517	ENST00000354449		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000482517	ENST00000469654		ChiTaRS3.1			BF931523	MYCBP2	chr13	77651362	-	ATG7	chr3	11599200	-
intron-intron	ENST00000225777	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000225777	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000225777	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000585591	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000585591	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000585591	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000589711	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000589711	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000589711	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000588282	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000588282	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000588282	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000590201	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000590201	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
intron-intron	ENST00000590201	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
3UTR-intron	ENST00000592456	ENST00000406386		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
3UTR-intron	ENST00000592456	ENST00000407319		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
3UTR-intron	ENST00000592456	ENST00000403663		ChiTaRS3.1			BG014553	SYNGR2	chr17	76167428	+	TRIOBP	chr22	38159697	-
Frame-shit	ENST00000327155	ENST00000327155		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000327155	ENST00000399722		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000327155	ENST00000399725		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000327155	ENST00000360790		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
5CDS-intron	ENST00000327155	ENST00000581687		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399722	ENST00000327155		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399722	ENST00000399722		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399722	ENST00000399725		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399722	ENST00000360790		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
5CDS-intron	ENST00000399722	ENST00000581687		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399725	ENST00000327155		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399725	ENST00000399722		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399725	ENST00000399725		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000399725	ENST00000360790		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
5CDS-intron	ENST00000399725	ENST00000581687		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000360790	ENST00000327155		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000360790	ENST00000399722		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000360790	ENST00000399725		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
Frame-shit	ENST00000360790	ENST00000360790		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
5CDS-intron	ENST00000360790	ENST00000581687		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-3CDS	ENST00000581687	ENST00000327155		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-3CDS	ENST00000581687	ENST00000399722		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-3CDS	ENST00000581687	ENST00000399725		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-3CDS	ENST00000581687	ENST00000360790		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-intron	ENST00000581687	ENST00000581687		ChiTaRS3.1			CA312983	RBBP8	chr18	20573344	-	RBBP8	chr18	20573514	+
intron-3CDS	ENST00000216294	ENST00000216294		ChiTaRS3.1			BU685773	SNAPC1	chr14	62245564	-	SNAPC1	chr14	62261692	-
intron-3UTR	ENST00000534695	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534695	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534695	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000455725	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000455725	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000531273	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000531273	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000420461	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000420461	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000378852	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000378852	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000534600	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000534600	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000221957		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000529334	ENST00000592528		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-intron	ENST00000529334	ENST00000585479		ChiTaRS3.1			BE672133	API5	chr11	43346485	-	PLIN3	chr19	4838860	+
intron-3UTR	ENST00000266058	ENST00000264710		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-intron	ENST00000266058	ENST00000462003		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-3UTR	ENST00000371070	ENST00000264710		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-intron	ENST00000371070	ENST00000462003		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-3UTR	ENST00000371041	ENST00000264710		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-intron	ENST00000371041	ENST00000462003		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-3UTR	ENST00000456008	ENST00000264710		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-intron	ENST00000456008	ENST00000462003		ChiTaRS3.1			BF934573	SLIT1	chr10	98850810	+	RAB10	chr2	26357905	+
intron-intron	ENST00000307102	ENST00000547002		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-intron	ENST00000307102	ENST00000442892		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-3UTR	ENST00000307102	ENST00000442218		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-intron	ENST00000307102	ENST00000476104		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-intron	ENST00000566326	ENST00000547002		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-intron	ENST00000566326	ENST00000442892		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-3UTR	ENST00000566326	ENST00000442218		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-intron	ENST00000566326	ENST00000476104		ChiTaRS3.1			BG285113	MAP2K1	chr15	66746948	+	SLC48A1	chr12	48174615	+
intron-5UTR	ENST00000281708	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000281708	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000281708	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000281708	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000603548	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603548	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603548	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603548	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000604872	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604872	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604872	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604872	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000296555	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000296555	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000296555	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000296555	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000263981	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000263981	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000263981	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000263981	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000393956	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000393956	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000393956	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000393956	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000603841	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603841	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603841	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000603841	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-5UTR	ENST00000604095	ENST00000536668		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604095	ENST00000544994		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604095	ENST00000228811		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
intron-3UTR	ENST00000604095	ENST00000540107		ChiTaRS3.1			BF089643	FBXW7	chr4	153244074	-	PRR4	chr12	10998476	+
5CDS-intron	ENST00000409110	ENST00000409110		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
5CDS-intron	ENST00000409110	ENST00000461532		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
5CDS-intron	ENST00000409110	ENST00000449594		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
intron-intron	ENST00000461532	ENST00000409110		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
intron-intron	ENST00000461532	ENST00000461532		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
intron-intron	ENST00000461532	ENST00000449594		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
5CDS-intron	ENST00000449594	ENST00000409110		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
5CDS-intron	ENST00000449594	ENST00000461532		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
5CDS-intron	ENST00000449594	ENST00000449594		ChiTaRS3.1			W27203	SAG	chr2	234243699	+	SAG	chr2	234243258	-
intron-3CDS	ENST00000371191	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371191	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000371191	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000407417	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000407417	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000407417	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000479364	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000479364	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000479364	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371189	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371189	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000371189	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
3UTR-3CDS	ENST00000403491	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
3UTR-3CDS	ENST00000403491	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
3UTR-intron	ENST00000403491	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371187	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371187	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000371187	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000485903	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000485903	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000485903	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371185	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371185	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000371185	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371184	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000371184	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000371184	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000357977	ENST00000366647		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-3CDS	ENST00000357977	ENST00000366646		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000357977	ENST00000469332		ChiTaRS3.1			AK023953	NFIA	chr1	61926976	+	GNPAT	chr1	231398550	+
intron-intron	ENST00000337907	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000337907	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000377464	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400907	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000400908	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000476556	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000370931		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000370932		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000351052		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000460330		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000354608		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000356595		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000414819		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000306666		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000460659	ENST00000370924		ChiTaRS3.1			BF333113	RERE	chr1	8456360	-	PTGER3	chr1	71502102	-
intron-intron	ENST00000268712	ENST00000528498		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000268712	ENST00000528900		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000268712	ENST00000405097		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000268712	ENST00000530301		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3UTR	ENST00000268712	ENST00000343115		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000268712	ENST00000544551		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395851	ENST00000528498		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395851	ENST00000528900		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395851	ENST00000405097		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395851	ENST00000530301		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3UTR	ENST00000395851	ENST00000343115		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395851	ENST00000544551		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395857	ENST00000528498		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395857	ENST00000528900		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395857	ENST00000405097		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395857	ENST00000530301		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3UTR	ENST00000395857	ENST00000343115		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395857	ENST00000544551		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395848	ENST00000528498		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395848	ENST00000528900		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395848	ENST00000405097		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395848	ENST00000530301		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3UTR	ENST00000395848	ENST00000343115		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000395848	ENST00000544551		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000583226	ENST00000528498		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000583226	ENST00000528900		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000583226	ENST00000405097		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000583226	ENST00000530301		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3UTR	ENST00000583226	ENST00000343115		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-intron	ENST00000583226	ENST00000544551		ChiTaRS3.1			AW373603	NCOR1	chr17	16055297	+	RDX	chr11	110102093	-
intron-3CDS	ENST00000321765	ENST00000321765		ChiTaRS3.1			BE091903	SPAG5	chr17	26920088	+	SPAG5	chr17	26925615	-
5CDS-3UTR	ENST00000216181	ENST00000216181		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
5CDS-intron	ENST00000216181	ENST00000475726		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
5CDS-intron	ENST00000216181	ENST00000401701		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-3UTR	ENST00000475726	ENST00000216181		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-intron	ENST00000475726	ENST00000475726		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-intron	ENST00000475726	ENST00000401701		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-3UTR	ENST00000401701	ENST00000216181		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-intron	ENST00000401701	ENST00000475726		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-intron	ENST00000401701	ENST00000401701		ChiTaRS3.1			BG388513	MYH9	chr22	36677326	-	MYH9	chr22	36677373	+
intron-intron	ENST00000237696	ENST00000237696		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000237696	ENST00000479756		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000237696	ENST00000498640		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000479756	ENST00000237696		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000479756	ENST00000479756		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000479756	ENST00000498640		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000498640	ENST00000237696		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000498640	ENST00000479756		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
intron-intron	ENST00000498640	ENST00000498640		ChiTaRS3.1			AW993923	RARRES1	chr3	158424701	+	RARRES1	chr3	158423383	+
5CDS-5UTR	ENST00000261182	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000261182	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000261182	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000261182	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000393263	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000393263	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000393263	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000431879	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000431879	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000431879	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000547773	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000547773	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000547773	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000544816	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000544816	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000544816	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-intron	ENST00000542344	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-intron	ENST00000542344	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5UTR-5UTR	ENST00000542344	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000535020	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000535020	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000535020	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000549596	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000549596	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000549596	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000547993	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000547993	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000547993	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000552342	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-intron	ENST00000552342	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
5CDS-5UTR	ENST00000552342	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000508803		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000382892		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000382891		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000382895		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000548044	ENST00000482415		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-intron	ENST00000548044	ENST00000382888		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000514045		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000436793		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000420906		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000503128		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
intron-5UTR	ENST00000548044	ENST00000398261		ChiTaRS3.1			DA779343	NAP1L1	chr12	76467983	-	WHSC1	chr4	1902353	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			DW467313	MALAT1	chr11	65271190	+	MALAT1	chr11	65270280	+
5UTR-intron	ENST00000295897	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
5UTR-intron	ENST00000295897	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000415165	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000503124	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000509063	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000401494	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399215		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000481477		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399212		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000332131		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399205		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399208		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399201		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-intron	ENST00000505649	ENST00000399207		ChiTaRS3.1			AI207513	ALB	chr4	74270006	-	SETD4	chr21	37444788	+
intron-3CDS	ENST00000393868	ENST00000393868		ChiTaRS3.1			BU607293	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-intron	ENST00000393868	ENST00000491123		ChiTaRS3.1			BU607293	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-3CDS	ENST00000491123	ENST00000393868		ChiTaRS3.1			BU607293	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-intron	ENST00000491123	ENST00000491123		ChiTaRS3.1			BU607293	SUCLG1	chr2	84652664	+	SUCLG1	chr2	84668196	-
intron-intron	ENST00000375571	ENST00000375571		ChiTaRS3.1			AY752860	MAPRE1	chr20	31430405	-	MAPRE1	chr20	31430559	+
5UTR-5UTR	ENST00000383740	ENST00000383740		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5UTR-5UTR	ENST00000383740	ENST00000292309		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5UTR-5UTR	ENST00000383740	ENST00000450053		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000292309	ENST00000383740		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000292309	ENST00000292309		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000292309	ENST00000450053		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000450053	ENST00000383740		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000450053	ENST00000292309		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5CDS-5UTR	ENST00000450053	ENST00000450053		ChiTaRS3.1			CN482413	NBEAL2	chr3	47037074	-	NBEAL2	chr3	47033009	+
5UTR-3CDS	ENST00000248594	ENST00000529230		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000415402		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000312055		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000354558		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-intron	ENST00000248594	ENST00000532321		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000529230		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000415402		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000312055		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000354558		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000415482	ENST00000532321		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000529230		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000415402		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000312055		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000354558		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000435495	ENST00000532321		ChiTaRS3.1			BF056903	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
3UTR-3UTR	ENST00000436909	ENST00000436909		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000436909	ENST00000561678		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000436909	ENST00000357464		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000436909	ENST00000573002		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
intron-3UTR	ENST00000561678	ENST00000436909		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
intron-3UTR	ENST00000561678	ENST00000561678		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
intron-3UTR	ENST00000561678	ENST00000357464		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
intron-3UTR	ENST00000561678	ENST00000573002		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000357464	ENST00000436909		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000357464	ENST00000561678		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000357464	ENST00000357464		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000357464	ENST00000573002		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000573002	ENST00000436909		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000573002	ENST00000561678		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000573002	ENST00000357464		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
3UTR-3UTR	ENST00000573002	ENST00000573002		ChiTaRS3.1			DW421003	PAPD5	chr16	50264496	+	PAPD5	chr16	50263862	+
intron-3UTR	ENST00000318130	ENST00000318130		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000318130	ENST00000367512		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000318130	ENST00000466392		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-3UTR	ENST00000367512	ENST00000318130		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000367512	ENST00000367512		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000367512	ENST00000466392		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-3UTR	ENST00000466392	ENST00000318130		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000466392	ENST00000367512		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000466392	ENST00000466392		ChiTaRS3.1			CV569883	EDEM3	chr1	184661234	+	EDEM3	chr1	184662437	-
intron-intron	ENST00000336665	ENST00000406386		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000336665	ENST00000407319		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000336665	ENST00000403663		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000406386		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000407319		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000304032	ENST00000403663		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000406386		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000407319		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409538	ENST00000403663		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000406386		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000407319		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000428334	ENST00000403663		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000406386		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000407319		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000409457	ENST00000403663		ChiTaRS3.1			BF815813	AGAP1	chr2	236873846	-	TRIOBP	chr22	38158607	-
intron-intron	ENST00000535648	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000535648	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000535648	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000346706	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000346706	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000346706	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000340094	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000340094	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000340094	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000345230	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000345230	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000345230	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000350763	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000350763	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000350763	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000341037	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000341037	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000341037	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000423613	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000423613	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000423613	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000537320	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000537320	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000537320	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000542877	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000542877	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000542877	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000481475	ENST00000416691		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000481475	ENST00000455146		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000481475	ENST00000465775		ChiTaRS3.1			BG459123	TNC	chr9	117833116	-	COG6	chr13	40330485	+
intron-intron	ENST00000589328	ENST00000366558		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000366559		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000484628		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000589328	ENST00000366557		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366558		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366559		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000484628		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000409746	ENST00000366557		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366558		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366559		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000484628		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-intron	ENST00000588801	ENST00000366557		ChiTaRS3.1			AW451493	PSTPIP2	chr18	43563809	+	KMO	chr1	241720990	-
intron-3UTR	ENST00000378164	ENST00000356352		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000378164	ENST00000357604		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000378164	ENST00000397053		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-intron	ENST00000378164	ENST00000460569		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000519355	ENST00000356352		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000519355	ENST00000357604		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000519355	ENST00000397053		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-intron	ENST00000519355	ENST00000460569		ChiTaRS3.1			AW994843	TAF2	chr8	120832199	+	UPF2	chr10	11962235	+
intron-3UTR	ENST00000339594	ENST00000339594		ChiTaRS3.1			AB032253	BAZ1B	chr7	72856520	-	BAZ1B	chr7	72855901	+
intron-3UTR	ENST00000339594	ENST00000404251		ChiTaRS3.1			AB032253	BAZ1B	chr7	72856520	-	BAZ1B	chr7	72855901	+
intron-3UTR	ENST00000404251	ENST00000339594		ChiTaRS3.1			AB032253	BAZ1B	chr7	72856520	-	BAZ1B	chr7	72855901	+
intron-3UTR	ENST00000404251	ENST00000404251		ChiTaRS3.1			AB032253	BAZ1B	chr7	72856520	-	BAZ1B	chr7	72855901	+
intron-3CDS	ENST00000451188	ENST00000290705		ChiTaRS3.1			BF766323	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-3CDS	ENST00000438774	ENST00000290705		ChiTaRS3.1			BF766323	TMEM151B	chr6	44273512	+	MT1A	chr16	56672578	+
intron-intron	ENST00000337620	ENST00000560305		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000561011		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000559911		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000558113		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000358005		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000416810		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000558750		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000558871		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000337620	ENST00000560109		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000560305		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000561011		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000559911		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000558113		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000358005		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000416810		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000558750		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000558871		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
5UTR-intron	ENST00000396386	ENST00000560109		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000560305		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000561011		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000559911		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000558113		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000358005		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000416810		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000558750		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000558871		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000409747	ENST00000560109		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000560305		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000561011		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000559911		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000558113		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000358005		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000416810		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000558750		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000558871		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-intron	ENST00000497498	ENST00000560109		ChiTaRS3.1			AI800263	CBX3	chr7	26241386	-	C15orf57	chr15	40854970	+
intron-3UTR	ENST00000357067	ENST00000357067		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000357067	ENST00000438320		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000357067	ENST00000510370		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000357067	ENST00000513383		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-3UTR	ENST00000438320	ENST00000357067		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000438320	ENST00000438320		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000438320	ENST00000510370		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000438320	ENST00000513383		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-3UTR	ENST00000510370	ENST00000357067		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000510370	ENST00000438320		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000510370	ENST00000510370		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000510370	ENST00000513383		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-3UTR	ENST00000513383	ENST00000357067		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000513383	ENST00000438320		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000513383	ENST00000510370		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
intron-intron	ENST00000513383	ENST00000513383		ChiTaRS3.1			AW946723	DCTD	chr4	183811422	-	DCTD	chr4	183811364	+
3UTR-intron	ENST00000263398	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000263398	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000263398	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000263398	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000263398	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000526025	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000526025	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000526025	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000526025	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000526025	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000449691	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000449691	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000449691	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000449691	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000449691	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000360158	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000360158	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000360158	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000360158	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000360158	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000415148	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000415148	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000415148	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000415148	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000415148	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000437706	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000437706	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000437706	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000437706	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000437706	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000433354	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000433354	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000433354	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000433354	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000433354	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000428726	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000428726	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000428726	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000428726	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000428726	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000526669	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000526669	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000526669	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000526669	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
5CDS-intron	ENST00000526669	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000433892	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000433892	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000433892	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000433892	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000433892	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000278386	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000278386	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000278386	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000278386	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000278386	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000434472	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000434472	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000434472	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000434472	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
3UTR-intron	ENST00000434472	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000352818	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000352818	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000352818	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000352818	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000352818	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000528922	ENST00000507668		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000528922	ENST00000512972		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000528922	ENST00000509193		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000528922	ENST00000512721		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
intron-intron	ENST00000528922	ENST00000513907		ChiTaRS3.1			EY123442	CD44	chr11	35251011	+	SERINC5	chr5	79453367	-
Frame-shit	ENST00000370018	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000370018	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000370018	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000370018	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000370018	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000370018	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
5CDS-intron	ENST00000370018	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000318100	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
5CDS-intron	ENST00000318100	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000508582	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
5CDS-intron	ENST00000508582	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
Frame-shit	ENST00000360203	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
5CDS-intron	ENST00000360203	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000488316	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-intron	ENST00000488316	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000392514		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000551150		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000552292		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000313104		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000546989		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-3CDS	ENST00000370003	ENST00000228306		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
intron-intron	ENST00000370003	ENST00000550296		ChiTaRS3.1			BC000673	RTEL1	chr20	62305447	+	RPLP0	chr12	120635270	-
3UTR-3CDS	ENST00000534336	ENST00000405201		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
3UTR-3CDS	ENST00000534336	ENST00000404621		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
3UTR-3CDS	ENST00000534336	ENST00000404121		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
3UTR-3CDS	ENST00000534336	ENST00000356219		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
3UTR-3CDS	ENST00000534336	ENST00000397355		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
3UTR-3CDS	ENST00000534336	ENST00000429285		ChiTaRS3.1			BF846253	MALAT1	chr11	65268026	-	NCOR2	chr12	124887007	+
intron-3UTR	ENST00000607272	ENST00000402508		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000607272	ENST00000403359		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000607272	ENST00000316377		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000607272	ENST00000480038		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000607272	ENST00000378314		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000607272	ENST00000405808		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000607272	ENST00000434523		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000234420	ENST00000402508		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000234420	ENST00000403359		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000234420	ENST00000316377		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000234420	ENST00000480038		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000234420	ENST00000378314		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000234420	ENST00000405808		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000234420	ENST00000434523		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000540021	ENST00000402508		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000540021	ENST00000403359		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000540021	ENST00000316377		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000540021	ENST00000480038		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000540021	ENST00000378314		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000540021	ENST00000405808		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000540021	ENST00000434523		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000538136	ENST00000402508		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000538136	ENST00000403359		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000538136	ENST00000316377		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000538136	ENST00000480038		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000538136	ENST00000378314		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000538136	ENST00000405808		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-3UTR	ENST00000538136	ENST00000434523		ChiTaRS3.1			BG779363	MSH6	chr2	48031135	-	FBXO11	chr2	48034721	-
intron-intron	ENST00000216554	ENST00000307404		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000216554	ENST00000529231		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000216554	ENST00000525016		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000558506	ENST00000307404		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000558506	ENST00000529231		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000558506	ENST00000525016		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000560200	ENST00000307404		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000560200	ENST00000529231		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000560200	ENST00000525016		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000392715	ENST00000307404		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000392715	ENST00000529231		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
intron-intron	ENST00000392715	ENST00000525016		ChiTaRS3.1			DB066453	EIF5	chr14	103804311	+	BOP1	chr8	145505610	-
5CDS-intron	ENST00000543491	ENST00000607261		ChiTaRS3.1			BG707213	PCDH7	chr4	30726218	+	SNORD113-5	chr14	101403738	+
intron-intron	ENST00000509925	ENST00000607261		ChiTaRS3.1			BG707213	PCDH7	chr4	30726218	+	SNORD113-5	chr14	101403738	+
5CDS-intron	ENST00000361762	ENST00000607261		ChiTaRS3.1			BG707213	PCDH7	chr4	30726218	+	SNORD113-5	chr14	101403738	+
3UTR-3CDS	ENST00000377918	ENST00000377918		ChiTaRS3.1			BX280393	PCDH17	chr13	58299753	+	PCDH17	chr13	58240600	+
intron-intron	ENST00000263202	ENST00000303113		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000263202	ENST00000453626		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000263202	ENST00000303071		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000263202	ENST00000432378		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000360834	ENST00000303113		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000360834	ENST00000453626		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000360834	ENST00000303071		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000360834	ENST00000432378		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000399523	ENST00000303113		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000399523	ENST00000453626		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000399523	ENST00000303071		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000399523	ENST00000432378		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000484101	ENST00000303113		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000484101	ENST00000453626		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000484101	ENST00000303071		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000484101	ENST00000432378		ChiTaRS3.1			BF840003	UFD1L	chr22	19442349	+	DONSON	chr21	35281477	-
intron-intron	ENST00000342983	ENST00000342983		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000342983	ENST00000370874		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000342983	ENST00000460462		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000370874	ENST00000342983		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000370874	ENST00000370874		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000370874	ENST00000460462		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000460462	ENST00000342983		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000460462	ENST00000370874		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000460462	ENST00000460462		ChiTaRS3.1			DA833583	RAP2C	chrX	131342264	-	RAP2C	chrX	131344503	-
intron-intron	ENST00000506722	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000506722	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000394537	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000357077	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
5CDS-intron	ENST00000264366	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000509550	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000510275	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000506722		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000394537		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000357077		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000264366		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000509550		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000510275		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-intron	ENST00000504887	ENST00000504887		ChiTaRS3.1			AI470543	ANK2	chr4	114274810	-	ANK2	chr4	114275372	-
intron-3UTR	ENST00000444376	ENST00000444376		ChiTaRS3.1			AW419283	HNRNPU	chr1	245016695	-	HNRNPU	chr1	245016757	+
intron-3UTR	ENST00000444376	ENST00000283179		ChiTaRS3.1			AW419283	HNRNPU	chr1	245016695	-	HNRNPU	chr1	245016757	+
5CDS-3UTR	ENST00000283179	ENST00000444376		ChiTaRS3.1			AW419283	HNRNPU	chr1	245016695	-	HNRNPU	chr1	245016757	+
5CDS-3UTR	ENST00000283179	ENST00000283179		ChiTaRS3.1			AW419283	HNRNPU	chr1	245016695	-	HNRNPU	chr1	245016757	+
3UTR-3UTR	ENST00000335350	ENST00000335350		ChiTaRS3.1			CA411593	UNC5B	chr10	73059569	-	UNC5B	chr10	73061211	-
3UTR-3UTR	ENST00000335350	ENST00000373192		ChiTaRS3.1			CA411593	UNC5B	chr10	73059569	-	UNC5B	chr10	73061211	-
3UTR-3UTR	ENST00000373192	ENST00000335350		ChiTaRS3.1			CA411593	UNC5B	chr10	73059569	-	UNC5B	chr10	73061211	-
3UTR-3UTR	ENST00000373192	ENST00000373192		ChiTaRS3.1			CA411593	UNC5B	chr10	73059569	-	UNC5B	chr10	73061211	-
3UTR-3UTR	ENST00000336273	ENST00000336273		ChiTaRS3.1			BG166673	MTDH	chr8	98738042	-	MTDH	chr8	98738111	+
3UTR-intron	ENST00000336273	ENST00000519934		ChiTaRS3.1			BG166673	MTDH	chr8	98738042	-	MTDH	chr8	98738111	+
intron-3UTR	ENST00000519934	ENST00000336273		ChiTaRS3.1			BG166673	MTDH	chr8	98738042	-	MTDH	chr8	98738111	+
intron-intron	ENST00000519934	ENST00000519934		ChiTaRS3.1			BG166673	MTDH	chr8	98738042	-	MTDH	chr8	98738111	+
intron-3CDS	ENST00000307637	ENST00000307637		ChiTaRS3.1			CB053853	C3AR1	chr12	8211693	-	C3AR1	chr12	8212728	-
intron-intron	ENST00000468758	ENST00000377093		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-3UTR	ENST00000468758	ENST00000263934		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-3UTR	ENST00000468758	ENST00000377086		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000468758	ENST00000377083		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000468758	ENST00000377081		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000468758	ENST00000465635		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-intron	ENST00000409645	ENST00000377093		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-3UTR	ENST00000409645	ENST00000263934		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-3UTR	ENST00000409645	ENST00000377086		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-intron	ENST00000409645	ENST00000377083		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-intron	ENST00000409645	ENST00000377081		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
3UTR-intron	ENST00000409645	ENST00000465635		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000281923	ENST00000377093		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-3UTR	ENST00000281923	ENST00000263934		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-3UTR	ENST00000281923	ENST00000377086		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000281923	ENST00000377083		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000281923	ENST00000377081		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000281923	ENST00000465635		ChiTaRS3.1			BF802193	MGAT5	chr2	135208384	-	KIF1B	chr1	10436988	-
intron-intron	ENST00000379441	ENST00000225235		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000379441	ENST00000485048		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000179765	ENST00000225235		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000179765	ENST00000485048		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000551812	ENST00000225235		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000551812	ENST00000485048		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000549884	ENST00000225235		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000549884	ENST00000485048		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-intron	ENST00000553222	ENST00000225235		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
intron-3UTR	ENST00000553222	ENST00000485048		ChiTaRS3.1			BF376013	BAZ2A	chr12	57008764	+	TBC1D12	chr10	96269452	-
3UTR-3UTR	ENST00000439858	ENST00000439858		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
3UTR-3UTR	ENST00000439858	ENST00000432792		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
3UTR-intron	ENST00000439858	ENST00000442284		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
3UTR-3UTR	ENST00000432792	ENST00000439858		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
3UTR-3UTR	ENST00000432792	ENST00000432792		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
3UTR-intron	ENST00000432792	ENST00000442284		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
intron-3UTR	ENST00000442284	ENST00000439858		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
intron-3UTR	ENST00000442284	ENST00000432792		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
intron-intron	ENST00000442284	ENST00000442284		ChiTaRS3.1			CA944643	TMEM125	chr1	43739510	-	TMEM125	chr1	43739426	+
intron-5UTR	ENST00000369583	ENST00000292539		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-intron	ENST00000369583	ENST00000529009		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-5UTR	ENST00000369583	ENST00000435887		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-5UTR	ENST00000468749	ENST00000292539		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-intron	ENST00000468749	ENST00000529009		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-5UTR	ENST00000468749	ENST00000435887		ChiTaRS3.1			AI612853	DUSP5	chr10	112262036	+	PPP1R16A	chr8	145722204	-
intron-3CDS	ENST00000507166	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507166	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507166	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507166	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000507166	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000507166	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000358575	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000358575	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000358575	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000358575	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000358575	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000358575	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000337488	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000337488	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000337488	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000337488	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000337488	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000337488	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507922	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507922	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507922	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000507922	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000507922	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000507922	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000306932	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000306932	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000306932	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
In-frame	ENST00000306932	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000306932	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
5CDS-intron	ENST00000306932	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000510668	ENST00000507166		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000510668	ENST00000358575		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000510668	ENST00000337488		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-3CDS	ENST00000510668	ENST00000507922		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000510668	ENST00000306932		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000510668	ENST00000510668		ChiTaRS3.1			BF801893	FIP1L1	chr4	54319300	+	FIP1L1	chr4	54280779	+
intron-intron	ENST00000356352	ENST00000580900		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000356352	ENST00000380172		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000356352	ENST00000460874		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000356352	ENST00000427788		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000357604	ENST00000580900		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000357604	ENST00000380172		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000357604	ENST00000460874		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000357604	ENST00000427788		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000397053	ENST00000580900		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000397053	ENST00000380172		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000397053	ENST00000460874		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000397053	ENST00000427788		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000460569	ENST00000580900		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000460569	ENST00000380172		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000460569	ENST00000460874		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-intron	ENST00000460569	ENST00000427788		ChiTaRS3.1			CR738223	UPF2	chr10	12011461	-	MTAP	chr9	21861026	+
intron-3CDS	ENST00000563392	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000563392	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000570055	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000570055	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000563206	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000563206	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000451014	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000451014	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000568625	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000568625	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000288071	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000288071	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000393657	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000393657	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-3CDS	ENST00000355992	ENST00000233242		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000355992	ENST00000399256		ChiTaRS3.1			BP238983	DDX19B	chr16	70406156	+	APOB	chr2	21227161	-
intron-intron	ENST00000557515	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000557515	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000338631	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000357481	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000605057	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000457657	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000262710	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000397341	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555053	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000557515		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000338631		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000357481		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000605057		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000457657		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000262710		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000397341		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000555053		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000555352	ENST00000555352		ChiTaRS3.1			BF081323	ACIN1	chr14	23528426	+	ACIN1	chr14	23535595	-
intron-intron	ENST00000300289	ENST00000368679		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000300289	ENST00000368676		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000300289	ENST00000467145		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000469684	ENST00000368679		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000469684	ENST00000368676		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000469684	ENST00000467145		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000538521	ENST00000368679		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000538521	ENST00000368676		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-intron	ENST00000538521	ENST00000467145		ChiTaRS3.1			BQ369543	PDIA3	chr15	44045891	-	ADAM12	chr10	128043732	-
intron-3CDS	ENST00000312962	ENST00000312962		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3CDS	ENST00000312962	ENST00000361821		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-5UTR	ENST00000312962	ENST00000537964		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3CDS	ENST00000361821	ENST00000312962		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3CDS	ENST00000361821	ENST00000361821		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-5UTR	ENST00000361821	ENST00000537964		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3CDS	ENST00000537964	ENST00000312962		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3CDS	ENST00000537964	ENST00000361821		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-5UTR	ENST00000537964	ENST00000537964		ChiTaRS3.1			BF336733	KRI1	chr19	10673489	+	KRI1	chr19	10671698	+
intron-3UTR	ENST00000532636	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000532636	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000533540	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000533540	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000453788	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000453788	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000534624	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000534624	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000227378	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000227378	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000534319	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000534319	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000526110	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000526110	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000526862	ENST00000219343		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
intron-3UTR	ENST00000526862	ENST00000566454		ChiTaRS3.1			BQ338693	HSPA8	chr11	122929465	+	SLC7A6	chr16	68334246	+
Frame-shit	ENST00000253861	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
Frame-shit	ENST00000253861	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
Frame-shit	ENST00000539845	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
Frame-shit	ENST00000539845	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
Frame-shit	ENST00000393161	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
Frame-shit	ENST00000393161	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000545148	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000545148	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000460346	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000460346	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000541309	ENST00000372969		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3CDS	ENST00000541309	ENST00000372967		ChiTaRS3.1			BF817133	EXOC4	chr7	132990779	-	NDUFS5	chr1	39494462	-
intron-3UTR	ENST00000254166	ENST00000596921		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-3UTR	ENST00000254166	ENST00000306910		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-3UTR	ENST00000254166	ENST00000593920		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-intron	ENST00000254166	ENST00000596281		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-3UTR	ENST00000254166	ENST00000599238		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-3UTR	ENST00000254166	ENST00000322834		ChiTaRS3.1			DA496983	ZNF132	chr19	58946205	-	ZNF584	chr19	58928210	+
intron-3CDS	ENST00000274063	ENST00000274063		ChiTaRS3.1			CN431023	SFRP2	chr4	154701977	+	SFRP2	chr4	154702799	-
3UTR-3UTR	ENST00000327134	ENST00000327134		ChiTaRS3.1			BQ421883	PAK2	chr3	196558920	-	PAK2	chr3	196558003	+
5UTR-5UTR	ENST00000331737	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000331737	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000331737	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000361310	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000361310	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000413025	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000413025	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000436087	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000436087	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000452305	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000452305	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-5UTR	ENST00000442986	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5CDS-intron	ENST00000442986	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000538351	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000538351	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-5UTR	ENST00000375311	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
5UTR-intron	ENST00000375311	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000331737		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000361310		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000413025		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000436087		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000452305		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000442986		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000538351		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-5UTR	ENST00000444692	ENST00000375311		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000444692	ENST00000444692		ChiTaRS3.1			AW893493	ZNF438	chr10	31165927	-	ZNF438	chr10	31230582	-
intron-intron	ENST00000572173	ENST00000335762		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399655		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000480911		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399644		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000344100		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399638		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399629		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399597		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000327702		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399621		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399649		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399637		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000402845		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399591		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399641		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000347598		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399606		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399595		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399601		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399603		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399634		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000399617		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000406454		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572173	ENST00000491104		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000335762		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399655		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000480911		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399644		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000344100		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399638		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399629		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399597		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000327702		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399621		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399649		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399637		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000402845		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399591		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399641		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000347598		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399606		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399595		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399601		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399603		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399634		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000399617		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000406454		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000572992	ENST00000491104		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000335762		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399655		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000480911		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399644		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000344100		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399638		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399629		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399597		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000327702		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399621		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399649		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399637		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000402845		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399591		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399641		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000347598		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399606		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399595		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399601		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399603		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399634		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000399617		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000406454		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000381820	ENST00000491104		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000335762		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399655		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000480911		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399644		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000344100		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399638		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399629		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399597		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000327702		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399621		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399649		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399637		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000402845		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399591		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399641		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000347598		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399606		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399595		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399601		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399603		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399634		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000399617		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000406454		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000312499	ENST00000491104		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000335762		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399655		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000480911		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399644		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000344100		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399638		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399629		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399597		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000327702		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399621		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399649		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399637		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000402845		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399591		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399641		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000347598		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399606		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399595		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399601		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399603		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399634		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000399617		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000406454		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
intron-intron	ENST00000576027	ENST00000491104		ChiTaRS3.1			DB055213	RMI2	chr16	11369741	-	CACNA1C	chr12	2394520	+
5CDS-3UTR	ENST00000439458	ENST00000272117		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
5CDS-3UTR	ENST00000439458	ENST00000429204		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
5CDS-intron	ENST00000439458	ENST00000366784		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
5CDS-3UTR	ENST00000272845	ENST00000272117		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
5CDS-3UTR	ENST00000272845	ENST00000429204		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
5CDS-intron	ENST00000272845	ENST00000366784		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-3UTR	ENST00000478701	ENST00000272117		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-3UTR	ENST00000478701	ENST00000429204		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-intron	ENST00000478701	ENST00000366784		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-3UTR	ENST00000539183	ENST00000272117		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-3UTR	ENST00000539183	ENST00000429204		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-intron	ENST00000539183	ENST00000366784		ChiTaRS3.1			BQ338653	UNC80	chr2	210682626	+	ITPKB	chr1	226820241	+
intron-3CDS	ENST00000261383	ENST00000261383		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3UTR	ENST00000261383	ENST00000415178		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-intron	ENST00000261383	ENST00000575491		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3CDS	ENST00000415178	ENST00000261383		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3UTR	ENST00000415178	ENST00000415178		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-intron	ENST00000415178	ENST00000575491		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3CDS	ENST00000575491	ENST00000261383		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3UTR	ENST00000575491	ENST00000415178		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-intron	ENST00000575491	ENST00000575491		ChiTaRS3.1			AL039583	DNAH3	chr16	20981278	+	DNAH3	chr16	20981213	-
intron-3UTR	ENST00000376317	ENST00000377795		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000376317	ENST00000353334		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000376317	ENST00000524315		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000376317	ENST00000009530		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000536904	ENST00000377795		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000536904	ENST00000353334		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000536904	ENST00000524315		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000536904	ENST00000009530		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000540849	ENST00000377795		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000540849	ENST00000353334		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000540849	ENST00000524315		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000540849	ENST00000009530		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000538114	ENST00000377795		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000538114	ENST00000353334		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000538114	ENST00000524315		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000538114	ENST00000009530		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000376310	ENST00000377795		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000376310	ENST00000353334		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-3UTR	ENST00000376310	ENST00000524315		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000376310	ENST00000009530		ChiTaRS3.1			BG984903	PRICKLE3	chrX	49032995	+	CD74	chr5	149781552	+
intron-intron	ENST00000367203	ENST00000335762		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399655		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000480911		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399644		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000344100		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399638		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399629		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399597		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000327702		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399621		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399649		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399637		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000402845		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399591		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399641		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000347598		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399606		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399595		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399601		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399603		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399634		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000399617		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000406454		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
intron-intron	ENST00000367203	ENST00000491104		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000335762		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399655		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000480911		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399644		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000344100		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399638		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399629		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399597		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000327702		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399621		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399649		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399637		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000402845		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399591		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399641		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000347598		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399606		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399595		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399601		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399603		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399634		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000399617		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000406454		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-intron	ENST00000367204	ENST00000491104		ChiTaRS3.1			BI058553	SOX13	chr1	204095501	-	CACNA1C	chr12	2744059	-
3UTR-3UTR	ENST00000273347	ENST00000273347		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000273347	ENST00000491511		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-intron	ENST00000273347	ENST00000487830		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000273347	ENST00000477909		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000273347	ENST00000422132		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000491511	ENST00000273347		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000491511	ENST00000491511		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-intron	ENST00000491511	ENST00000487830		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000491511	ENST00000477909		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000491511	ENST00000422132		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-3UTR	ENST00000487830	ENST00000273347		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-3UTR	ENST00000487830	ENST00000491511		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-intron	ENST00000487830	ENST00000487830		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-3UTR	ENST00000487830	ENST00000477909		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-3UTR	ENST00000487830	ENST00000422132		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000477909	ENST00000273347		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000477909	ENST00000491511		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-intron	ENST00000477909	ENST00000487830		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000477909	ENST00000477909		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000477909	ENST00000422132		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000422132	ENST00000273347		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000422132	ENST00000491511		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-intron	ENST00000422132	ENST00000487830		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000422132	ENST00000477909		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
3UTR-3UTR	ENST00000422132	ENST00000422132		ChiTaRS3.1			CN368013	NXPE3	chr3	101541270	-	NXPE3	chr3	101541315	+
intron-intron	ENST00000396795	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396795	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396795	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396795	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000319770	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000319770	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000319770	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000319770	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396801	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396801	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396801	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396801	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000361959	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000361959	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000361959	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000361959	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
5CDS-intron	ENST00000355772	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
5CDS-intron	ENST00000355772	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
5CDS-intron	ENST00000355772	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
5CDS-intron	ENST00000355772	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396799	ENST00000262056		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396799	ENST00000551527		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396799	ENST00000420463		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
intron-intron	ENST00000396799	ENST00000416762		ChiTaRS3.1			AW386153	ZNF384	chr12	6775904	-	EIF4B	chr12	53433209	-
3UTR-3UTR	ENST00000249064	ENST00000249064		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
3UTR-intron	ENST00000249064	ENST00000448492		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
3UTR-intron	ENST00000249064	ENST00000421503		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
3UTR-intron	ENST00000249064	ENST00000443309		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-3UTR	ENST00000448492	ENST00000249064		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000448492	ENST00000448492		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000448492	ENST00000421503		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000448492	ENST00000443309		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-3UTR	ENST00000421503	ENST00000249064		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000421503	ENST00000448492		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000421503	ENST00000421503		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000421503	ENST00000443309		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-3UTR	ENST00000443309	ENST00000249064		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000443309	ENST00000448492		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000443309	ENST00000421503		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-intron	ENST00000443309	ENST00000443309		ChiTaRS3.1			AW238233	CCDC117	chr22	29184676	+	CCDC117	chr22	29185202	-
intron-5UTR	ENST00000455089	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000455089	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000455089	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000455089	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000455089	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000455089	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000342916	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000342916	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000342916	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000342916	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000342916	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000342916	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000344576	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000344576	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000344576	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000344576	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000344576	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000344576	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000420316	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000420316	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000420316	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000420316	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000420316	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000420316	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-5UTR	ENST00000275493	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-5UTR	ENST00000275493	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000275493	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000275493	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000275493	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000275493	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000442591	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000442591	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000442591	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000442591	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000442591	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000442591	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000463948	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-5UTR	ENST00000463948	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000463948	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000463948	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000463948	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000463948	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-5UTR	ENST00000454757	ENST00000359947		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-5UTR	ENST00000454757	ENST00000438120		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000454757	ENST00000372413		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000454757	ENST00000372414		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000454757	ENST00000422171		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
5CDS-intron	ENST00000454757	ENST00000496447		ChiTaRS3.1			BG005213	EGFR	chr7	55272979	-	PTPRF	chr1	43996703	+
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY840546	KMT2A	chr11	118358177	+	MLLT3	chr9	20392769	-
3UTR-3UTR	ENST00000344096	ENST00000344096		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000393555		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-intron	ENST00000344096	ENST00000537632		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000393555	ENST00000344096		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000393555		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000393555	ENST00000537632		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-3UTR	ENST00000537632	ENST00000344096		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000393555		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
intron-intron	ENST00000537632	ENST00000537632		ChiTaRS3.1			D52453	DYRK2	chr12	68055246	+	DYRK2	chr12	68055183	-
3UTR-3UTR	ENST00000360655	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000360655	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000360655	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-3UTR	ENST00000396085	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000396085	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000396085	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-3UTR	ENST00000349880	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000349880	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000349880	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-3UTR	ENST00000396087	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000396087	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000396087	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-3UTR	ENST00000527559	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000527559	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000527559	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-3UTR	ENST00000540292	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000540292	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000540292	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-3UTR	ENST00000533917	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000533917	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000533917	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-3UTR	ENST00000311043	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000311043	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
3UTR-intron	ENST00000311043	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-3UTR	ENST00000534229	ENST00000392845		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000534229	ENST00000359479		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000534229	ENST00000460729		ChiTaRS3.1			BE813423	NAV2	chr11	20141202	-	SLC33A1	chr3	155545789	+
intron-intron	ENST00000300738	ENST00000300738		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000300738	ENST00000423050		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000300738	ENST00000534285		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000300738	ENST00000537197		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000300738	ENST00000528470		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000423050	ENST00000300738		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000423050	ENST00000423050		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000423050	ENST00000534285		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000423050	ENST00000537197		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000423050	ENST00000528470		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000534285	ENST00000300738		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000534285	ENST00000423050		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000534285	ENST00000534285		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000534285	ENST00000537197		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000534285	ENST00000528470		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000537197	ENST00000300738		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000537197	ENST00000423050		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000537197	ENST00000534285		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000537197	ENST00000537197		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000537197	ENST00000528470		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000528470	ENST00000300738		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000528470	ENST00000423050		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000528470	ENST00000534285		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000528470	ENST00000537197		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-intron	ENST00000528470	ENST00000528470		ChiTaRS3.1			H90823	RRM1	chr11	4125333	-	RRM1	chr11	4125742	-
intron-3CDS	ENST00000352251	ENST00000451292		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000377797		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000445265		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000323668		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000439160		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000394269		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000504761		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000352251	ENST00000513346		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-intron	ENST00000352251	ENST00000506063		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000451292		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000377797		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000445265		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000323668		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000439160		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000394269		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000504761		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000350125	ENST00000513346		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-intron	ENST00000350125	ENST00000506063		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000451292		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000377797		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000445265		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000323668		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000439160		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000394269		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000504761		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-3CDS	ENST00000484434	ENST00000513346		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
intron-intron	ENST00000484434	ENST00000506063		ChiTaRS3.1			BF799173	PROSER1	chr13	39587108	+	TCOF1	chr5	149756048	+
3UTR-3UTR	ENST00000353703	ENST00000353703		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-intron	ENST00000353703	ENST00000479421		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000353703	ENST00000372839		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-3UTR	ENST00000479421	ENST00000353703		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-intron	ENST00000479421	ENST00000479421		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-3UTR	ENST00000479421	ENST00000372839		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000372839	ENST00000353703		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-intron	ENST00000372839	ENST00000479421		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
3UTR-3UTR	ENST00000372839	ENST00000372839		ChiTaRS3.1			BC000883	YWHAB	chr20	43535622	-	YWHAB	chr20	43535783	+
intron-intron	ENST00000413366	ENST00000308664		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000413366	ENST00000395494		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000413366	ENST00000539276		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000413366	ENST00000550248		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000413366	ENST00000552636		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000583361	ENST00000308664		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000583361	ENST00000395494		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000583361	ENST00000539276		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000583361	ENST00000550248		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000583361	ENST00000552636		ChiTaRS3.1			CV427033	PRKCA	chr17	64690984	-	ATP2A2	chr12	110759622	-
intron-intron	ENST00000458420	ENST00000546087		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-3UTR	ENST00000458420	ENST00000538183		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000367055		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000367054		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000444946		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000337404		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000452684		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-intron	ENST00000458420	ENST00000535372		ChiTaRS3.1			AW452863	CLSTN2	chr3	140192881	-	SOD2	chr6	160100952	+
intron-3CDS	ENST00000308354	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000308354	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000308354	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000308354	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000308354	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000308354	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000308354	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000308354	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000397760	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000397760	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397760	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397760	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397760	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397760	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397760	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000397760	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000339162	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000339162	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000339162	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000339162	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000339162	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000339162	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000339162	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000339162	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000397761	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000397761	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397761	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397761	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397761	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397761	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000397761	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000397761	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000409141	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000409141	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409141	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409141	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409141	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409141	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409141	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000409141	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000265810	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000265810	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000265810	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000265810	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000265810	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000265810	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000265810	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000265810	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000409417	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000409417	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409417	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409417	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409417	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409417	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000409417	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000409417	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000448520	ENST00000308354		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3CDS	ENST00000448520	ENST00000397760		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000448520	ENST00000339162		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000448520	ENST00000397761		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000448520	ENST00000409141		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000448520	ENST00000265810		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-intron	ENST00000448520	ENST00000409417		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
intron-3UTR	ENST00000448520	ENST00000448520		ChiTaRS3.1			BG419413	PDLIM2	chr8	22449066	-	PDLIM2	chr8	22449112	+
3UTR-intron	ENST00000309469	ENST00000358105		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
3UTR-intron	ENST00000309469	ENST00000508675		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
3UTR-intron	ENST00000309469	ENST00000512931		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
3UTR-intron	ENST00000540862	ENST00000358105		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
3UTR-intron	ENST00000540862	ENST00000508675		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
3UTR-intron	ENST00000540862	ENST00000512931		ChiTaRS3.1			BG393063	ATG4D	chr19	10663766	-	C4orf22	chr4	81455000	+
intron-3CDS	ENST00000495013	ENST00000345506		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000590949		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000546010		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000452307		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000588868		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000495013	ENST00000587646		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000345506		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000590949		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000546010		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000452307		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000588868		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000258648	ENST00000587646		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000345506		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000590949		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000546010		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000452307		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000588868		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
intron-3CDS	ENST00000378586	ENST00000587646		ChiTaRS3.1			AI927873	MED4	chr13	48650838	+	STAT5A	chr17	40458350	-
3UTR-3UTR	ENST00000298299	ENST00000298299		ChiTaRS3.1			BM473403	ZNF22	chr10	45500428	-	ZNF22	chr10	45500523	+
intron-3UTR	ENST00000344442	ENST00000299084		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000344442	ENST00000561205		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000509061	ENST00000299084		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000509061	ENST00000561205		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000324052	ENST00000299084		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000324052	ENST00000561205		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-3UTR	ENST00000503898	ENST00000299084		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000503898	ENST00000561205		ChiTaRS3.1			BC019653	LARP7	chr4	113559176	+	SPRED1	chr15	38647422	+
intron-intron	ENST00000330909	ENST00000330909		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000330909	ENST00000402939		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000330909	ENST00000483466		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000330909	ENST00000497477		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000330909	ENST00000470990		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000402939	ENST00000330909		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000402939	ENST00000402939		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000402939	ENST00000483466		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000402939	ENST00000497477		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000402939	ENST00000470990		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000483466	ENST00000330909		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000483466	ENST00000402939		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000483466	ENST00000483466		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000483466	ENST00000497477		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000483466	ENST00000470990		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000497477	ENST00000330909		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000497477	ENST00000402939		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000497477	ENST00000483466		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000497477	ENST00000497477		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000497477	ENST00000470990		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000470990	ENST00000330909		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000470990	ENST00000402939		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000470990	ENST00000483466		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000470990	ENST00000497477		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
intron-intron	ENST00000470990	ENST00000470990		ChiTaRS3.1			BE160243	MAGI1	chr3	65962296	-	MAGI1	chr3	65973308	-
5UTR-3CDS	ENST00000318948	ENST00000261721		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-3CDS	ENST00000318948	ENST00000379403		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-intron	ENST00000318948	ENST00000560015		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
intron-3CDS	ENST00000400199	ENST00000261721		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
intron-3CDS	ENST00000400199	ENST00000379403		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
intron-intron	ENST00000400199	ENST00000560015		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-3CDS	ENST00000400202	ENST00000261721		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-3CDS	ENST00000400202	ENST00000379403		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-intron	ENST00000400202	ENST00000560015		ChiTaRS3.1			CN412233	NRIP1	chr21	16386665	-	BTBD1	chr15	83710678	-
5UTR-intron	ENST00000584667	ENST00000536005		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000299694		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000561796		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000564819		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
5UTR-intron	ENST00000584667	ENST00000563075		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000536005		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000299694		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000561796		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000564819		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000355423	ENST00000563075		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000536005		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000299694		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000561796		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000564819		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000579864	ENST00000563075		ChiTaRS3.1			CD624673	SAP30BP	chr17	73663419	-	BEAN1	chr16	66526834	+
intron-intron	ENST00000448526	ENST00000448526		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000448526	ENST00000244741		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000448526	ENST00000405375		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000448526	ENST00000373711		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000448526	ENST00000478800		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000244741	ENST00000448526		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-3UTR	ENST00000244741	ENST00000244741		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-3UTR	ENST00000244741	ENST00000405375		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000244741	ENST00000373711		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000244741	ENST00000478800		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000405375	ENST00000448526		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-3UTR	ENST00000405375	ENST00000244741		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-3UTR	ENST00000405375	ENST00000405375		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000405375	ENST00000373711		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-intron	ENST00000405375	ENST00000478800		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000373711	ENST00000448526		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000373711	ENST00000244741		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000373711	ENST00000405375		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000373711	ENST00000373711		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000373711	ENST00000478800		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000478800	ENST00000448526		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000478800	ENST00000244741		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-3UTR	ENST00000478800	ENST00000405375		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000478800	ENST00000373711		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
intron-intron	ENST00000478800	ENST00000478800		ChiTaRS3.1			BI870543	CDKN1A	chr6	36654770	-	CDKN1A	chr6	36654797	+
3UTR-3UTR	ENST00000418604	ENST00000418604		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000418604	ENST00000303958		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000418604	ENST00000361621		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-intron	ENST00000418604	ENST00000466486		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000303958	ENST00000418604		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000303958	ENST00000303958		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000303958	ENST00000361621		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-intron	ENST00000303958	ENST00000466486		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000361621	ENST00000418604		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000361621	ENST00000303958		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-3UTR	ENST00000361621	ENST00000361621		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
3UTR-intron	ENST00000361621	ENST00000466486		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
intron-3UTR	ENST00000466486	ENST00000418604		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
intron-3UTR	ENST00000466486	ENST00000303958		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
intron-3UTR	ENST00000466486	ENST00000361621		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
intron-intron	ENST00000466486	ENST00000466486		ChiTaRS3.1			CR740283	PLP1	chrX	103046812	-	PLP1	chrX	103046981	+
intron-intron	ENST00000254480	ENST00000609205		ChiTaRS3.1			BE179463	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-3UTR	ENST00000254480	ENST00000360270		ChiTaRS3.1			BE179463	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-intron	ENST00000425518	ENST00000609205		ChiTaRS3.1			BE179463	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-3UTR	ENST00000425518	ENST00000360270		ChiTaRS3.1			BE179463	SMARCC1	chr3	47704672	+	MSN	chrX	64960136	-
intron-3CDS	ENST00000256545	ENST00000392509		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3CDS	ENST00000256545	ENST00000548342		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3CDS	ENST00000256545	ENST00000242577		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000256545	ENST00000548214		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000256545	ENST00000392508		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000256545	ENST00000550178		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000256545	ENST00000550845		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000256545	ENST00000549989		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3UTR	ENST00000256545	ENST00000552870		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3UTR	ENST00000256545	ENST00000552316		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3CDS	ENST00000532113	ENST00000392509		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3CDS	ENST00000532113	ENST00000548342		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3CDS	ENST00000532113	ENST00000242577		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000532113	ENST00000548214		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000532113	ENST00000392508		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000532113	ENST00000550178		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000532113	ENST00000550845		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000532113	ENST00000549989		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3UTR	ENST00000532113	ENST00000552870		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-3UTR	ENST00000532113	ENST00000552316		ChiTaRS3.1			BE831593	EMC7	chr15	34388135	-	DYNLL1	chr12	120936008	-
intron-intron	ENST00000523094	ENST00000504387		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523094	ENST00000379446		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523094	ENST00000379433		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523094	ENST00000508800		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000530742	ENST00000504387		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000530742	ENST00000379446		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000530742	ENST00000379433		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000530742	ENST00000508800		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000296951	ENST00000504387		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000296951	ENST00000379446		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000296951	ENST00000379433		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000296951	ENST00000508800		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000411809	ENST00000504387		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000411809	ENST00000379446		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000411809	ENST00000379433		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000411809	ENST00000508800		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523908	ENST00000504387		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523908	ENST00000379446		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523908	ENST00000379433		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
intron-intron	ENST00000523908	ENST00000508800		ChiTaRS3.1			AW862003	CLINT1	chr5	157263679	+	NEDD9	chr6	11186909	-
3UTR-intron	ENST00000334121	ENST00000334121		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
3UTR-5UTR	ENST00000334121	ENST00000380918		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
3UTR-3UTR	ENST00000334121	ENST00000284041		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
intron-intron	ENST00000380918	ENST00000334121		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
intron-5UTR	ENST00000380918	ENST00000380918		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
intron-3UTR	ENST00000380918	ENST00000284041		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
3UTR-intron	ENST00000284041	ENST00000334121		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
3UTR-5UTR	ENST00000284041	ENST00000380918		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
3UTR-3UTR	ENST00000284041	ENST00000284041		ChiTaRS3.1			BF790813	SREK1	chr5	65475165	+	SREK1	chr5	65454637	+
intron-intron	ENST00000369582	ENST00000372811		ChiTaRS3.1			AF370393	CGA	chr6	87795514	+	MFSD2A	chr1	40432474	+
intron-intron	ENST00000369582	ENST00000420632		ChiTaRS3.1			AF370393	CGA	chr6	87795514	+	MFSD2A	chr1	40432474	+
intron-intron	ENST00000369582	ENST00000372809		ChiTaRS3.1			AF370393	CGA	chr6	87795514	+	MFSD2A	chr1	40432474	+
intron-intron	ENST00000369582	ENST00000480630		ChiTaRS3.1			AF370393	CGA	chr6	87795514	+	MFSD2A	chr1	40432474	+
intron-3UTR	ENST00000159111	ENST00000312239		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000159111	ENST00000487117		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000159111	ENST00000375000		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000159111	ENST00000375003		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000381759	ENST00000312239		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000381759	ENST00000487117		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000381759	ENST00000375000		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000381759	ENST00000375003		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000536461	ENST00000312239		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000536461	ENST00000487117		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000536461	ENST00000375000		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000536461	ENST00000375003		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000592175	ENST00000312239		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000592175	ENST00000487117		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-intron	ENST00000592175	ENST00000375000		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000592175	ENST00000375003		ChiTaRS3.1			BQ222643	KDM4B	chr19	4978675	+	HP1BP3	chr1	21069925	-
intron-3UTR	ENST00000591778	ENST00000591778		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-3UTR	ENST00000591778	ENST00000262776		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-intron	ENST00000591778	ENST00000585407		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-3UTR	ENST00000262776	ENST00000591778		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-3UTR	ENST00000262776	ENST00000262776		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-intron	ENST00000262776	ENST00000585407		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-3UTR	ENST00000585407	ENST00000591778		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-3UTR	ENST00000585407	ENST00000262776		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-intron	ENST00000585407	ENST00000585407		ChiTaRS3.1			AW275453	LGALS3BP	chr17	76967489	+	LGALS3BP	chr17	76967547	-
intron-intron	ENST00000264485	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000264485	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000264485	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000425175	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000351898	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
3UTR-intron	ENST00000340595	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000514331	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000374820		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000452740		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-intron	ENST00000512686	ENST00000480175		ChiTaRS3.1			BM511213	SLC4A4	chr4	72437632	-	PIGU	chr20	33185686	-
intron-3CDS	ENST00000215565	ENST00000377698		ChiTaRS3.1			AI422203	NDUFB7	chr19	14677064	+	ALDH1B1	chr9	38396600	-
5CDS-3UTR	ENST00000517913	ENST00000376736		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-intron	ENST00000517913	ENST00000479197		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-3UTR	ENST00000435422	ENST00000376736		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-intron	ENST00000435422	ENST00000479197		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-3UTR	ENST00000447401	ENST00000376736		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-intron	ENST00000447401	ENST00000479197		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-3UTR	ENST00000337851	ENST00000376736		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
5CDS-intron	ENST00000337851	ENST00000479197		ChiTaRS3.1			Z25253	SGCD	chr5	155771633	+	RFK	chr9	79000926	-
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BE840873	MALAT1	chr11	65272619	-	MALAT1	chr11	65272767	+
5CDS-intron	ENST00000262519	ENST00000541428		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000379454		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000523897		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522919		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000356457		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000518068		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517903		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000445642		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517847		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522835		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517856		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000389204		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000522603		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000379449		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
5CDS-intron	ENST00000262519	ENST00000517661		ChiTaRS3.1			BC108673	SETD1A	chr16	30970457	+	ASPH	chr8	62492380	+
intron-5UTR	ENST00000368467	ENST00000368467		ChiTaRS3.1			BP323853	PMVK	chr1	154898925	-	PMVK	chr1	154909163	-
intron-intron	ENST00000228862	ENST00000228862		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000228862	ENST00000298573		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000228862	ENST00000545864		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000298573	ENST00000228862		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000298573	ENST00000298573		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000298573	ENST00000545864		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000545864	ENST00000228862		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000545864	ENST00000298573		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-intron	ENST00000545864	ENST00000545864		ChiTaRS3.1			BF910003	DUSP16	chr12	12699106	+	DUSP16	chr12	12698989	-
intron-3CDS	ENST00000297785	ENST00000297785		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000297785	ENST00000376939		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000297785	ENST00000482210		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-3CDS	ENST00000376939	ENST00000297785		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000376939	ENST00000376939		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000376939	ENST00000482210		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-3CDS	ENST00000482210	ENST00000297785		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000482210	ENST00000376939		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000482210	ENST00000482210		ChiTaRS3.1			BU685483	ALDH1A1	chr9	75515698	+	ALDH1A1	chr9	75516164	-
intron-intron	ENST00000379251	ENST00000379251		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379251	ENST00000379253		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379251	ENST00000379254		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379251	ENST00000379270		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-3UTR	ENST00000379251	ENST00000489394		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379253	ENST00000379251		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379253	ENST00000379253		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379253	ENST00000379254		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379253	ENST00000379270		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-3UTR	ENST00000379253	ENST00000489394		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379254	ENST00000379251		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379254	ENST00000379253		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379254	ENST00000379254		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000379254	ENST00000379270		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-3UTR	ENST00000379254	ENST00000489394		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000379270	ENST00000379251		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000379270	ENST00000379253		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000379270	ENST00000379254		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000379270	ENST00000379270		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-3UTR	ENST00000379270	ENST00000489394		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000489394	ENST00000379251		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000489394	ENST00000379253		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000489394	ENST00000379254		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-intron	ENST00000489394	ENST00000379270		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
3UTR-3UTR	ENST00000489394	ENST00000489394		ChiTaRS3.1			BU674743	SAT1	chrX	23804248	-	SAT1	chrX	23803954	+
intron-intron	ENST00000570308	ENST00000570308		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000570308	ENST00000219070		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000570308	ENST00000543485		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000570308	ENST00000437642		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
5CDS-intron	ENST00000219070	ENST00000570308		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
5CDS-intron	ENST00000219070	ENST00000219070		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
5CDS-intron	ENST00000219070	ENST00000543485		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
5CDS-intron	ENST00000219070	ENST00000437642		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000543485	ENST00000570308		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000543485	ENST00000219070		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000543485	ENST00000543485		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000543485	ENST00000437642		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000437642	ENST00000570308		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000437642	ENST00000219070		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000437642	ENST00000543485		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
intron-intron	ENST00000437642	ENST00000437642		ChiTaRS3.1			AU145173	MMP2	chr16	55513517	-	MMP2	chr16	55519684	-
3UTR-3UTR	ENST00000375807	ENST00000216181		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
3UTR-intron	ENST00000375807	ENST00000475726		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
3UTR-intron	ENST00000375807	ENST00000401701		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
3UTR-3UTR	ENST00000339901	ENST00000216181		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
3UTR-intron	ENST00000339901	ENST00000475726		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
3UTR-intron	ENST00000339901	ENST00000401701		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-3UTR	ENST00000534113	ENST00000216181		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-intron	ENST00000534113	ENST00000475726		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-intron	ENST00000534113	ENST00000401701		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-3UTR	ENST00000470305	ENST00000216181		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-intron	ENST00000470305	ENST00000475726		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-intron	ENST00000470305	ENST00000401701		ChiTaRS3.1			BQ182443	SECISBP2	chr9	91974167	-	MYH9	chr22	36678569	+
intron-3UTR	ENST00000563294	ENST00000382743		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000563294	ENST00000525319		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000563294	ENST00000524564		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000563294	ENST00000532956		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000563294	ENST00000529382		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-intron	ENST00000563294	ENST00000528702		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000442196	ENST00000382743		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000442196	ENST00000525319		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000442196	ENST00000524564		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000442196	ENST00000532956		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000442196	ENST00000529382		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-intron	ENST00000442196	ENST00000528702		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000310958	ENST00000382743		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000310958	ENST00000525319		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000310958	ENST00000524564		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000310958	ENST00000532956		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000310958	ENST00000529382		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-intron	ENST00000310958	ENST00000528702		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000425574	ENST00000382743		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000425574	ENST00000525319		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000425574	ENST00000524564		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000425574	ENST00000532956		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000425574	ENST00000529382		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-intron	ENST00000425574	ENST00000528702		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000569205	ENST00000382743		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000569205	ENST00000525319		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000569205	ENST00000524564		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000569205	ENST00000532956		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-3UTR	ENST00000569205	ENST00000529382		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
intron-intron	ENST00000569205	ENST00000528702		ChiTaRS3.1			BM968323	CCPG1	chr15	55649316	+	SIRT3	chr11	216665	-
5UTR-3CDS	ENST00000382545	ENST00000395487		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-3CDS	ENST00000382545	ENST00000429094		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000551601		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000452445		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000549027		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000333837		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000437801		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000547172		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
5UTR-intron	ENST00000382545	ENST00000548826		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-3CDS	ENST00000543874	ENST00000395487		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-3CDS	ENST00000543874	ENST00000429094		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000551601		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000452445		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000549027		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000333837		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000437801		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000547172		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
3UTR-intron	ENST00000543874	ENST00000548826		ChiTaRS3.1			DA091593	KCNA1	chr12	5019638	+	NELL2	chr12	44926509	-
intron-3UTR	ENST00000427522	ENST00000427522		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000427522	ENST00000467148		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000427522	ENST00000479540		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-3UTR	ENST00000467148	ENST00000427522		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000467148	ENST00000467148		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000467148	ENST00000479540		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-3UTR	ENST00000479540	ENST00000427522		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000479540	ENST00000467148		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000479540	ENST00000479540		ChiTaRS3.1			BE734493	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			JX266515	EWSR1	chr22	29684012	+	FLI1	chr11	128675073	+
5CDS-intron	ENST00000416293	ENST00000416293		ChiTaRS3.1			AI907073	ALDH2	chr12	112235978	+	ALDH2	chr12	112237886	-
5CDS-intron	ENST00000416293	ENST00000261733		ChiTaRS3.1			AI907073	ALDH2	chr12	112235978	+	ALDH2	chr12	112237886	-
5CDS-intron	ENST00000261733	ENST00000416293		ChiTaRS3.1			AI907073	ALDH2	chr12	112235978	+	ALDH2	chr12	112237886	-
5CDS-intron	ENST00000261733	ENST00000261733		ChiTaRS3.1			AI907073	ALDH2	chr12	112235978	+	ALDH2	chr12	112237886	-
intron-3UTR	ENST00000399640	ENST00000399640		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000399640	ENST00000319914		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000399640	ENST00000521180		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000399640	ENST00000522652		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000399640	ENST00000519435		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000319914	ENST00000399640		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000319914	ENST00000319914		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000319914	ENST00000521180		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000319914	ENST00000522652		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000319914	ENST00000519435		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000521180	ENST00000399640		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000521180	ENST00000319914		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000521180	ENST00000521180		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000521180	ENST00000522652		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000521180	ENST00000519435		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000522652	ENST00000399640		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000522652	ENST00000319914		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000522652	ENST00000521180		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000522652	ENST00000522652		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000522652	ENST00000519435		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000519435	ENST00000399640		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000519435	ENST00000319914		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-3UTR	ENST00000519435	ENST00000521180		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000519435	ENST00000522652		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000519435	ENST00000519435		ChiTaRS3.1			CB250683	ST3GAL1	chr8	134467213	+	ST3GAL1	chr8	134467383	-
intron-intron	ENST00000392951	ENST00000392951		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-3UTR	ENST00000392951	ENST00000530649		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-3UTR	ENST00000392951	ENST00000532870		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-intron	ENST00000530649	ENST00000392951		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000530649	ENST00000530649		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000530649	ENST00000532870		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-intron	ENST00000532870	ENST00000392951		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000532870	ENST00000530649		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
3UTR-3UTR	ENST00000532870	ENST00000532870		ChiTaRS3.1			AJ706943	TAGLN	chr11	117075360	+	TAGLN	chr11	117075441	-
intron-intron	ENST00000377242	ENST00000377242		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377242	ENST00000377252		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377242	ENST00000377238		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377252	ENST00000377242		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377252	ENST00000377252		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377252	ENST00000377238		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377238	ENST00000377242		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377238	ENST00000377252		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-intron	ENST00000377238	ENST00000377238		ChiTaRS3.1			BE153763	PLXDC2	chr10	20108342	+	PLXDC2	chr10	20108250	-
intron-3CDS	ENST00000406337	ENST00000406337		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000406337	ENST00000265713		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000406337	ENST00000396930		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-intron	ENST00000406337	ENST00000485568		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000265713	ENST00000406337		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000265713	ENST00000265713		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000265713	ENST00000396930		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-intron	ENST00000265713	ENST00000485568		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000396930	ENST00000406337		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000396930	ENST00000265713		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000396930	ENST00000396930		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-intron	ENST00000396930	ENST00000485568		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000485568	ENST00000406337		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000485568	ENST00000265713		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-3CDS	ENST00000485568	ENST00000396930		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-intron	ENST00000485568	ENST00000485568		ChiTaRS3.1			BP318953	KAT6A	chr8	41792245	-	KAT6A	chr8	41798753	-
intron-intron	ENST00000337414	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000337414	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000337414	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000337414	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380718	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380718	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380718	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380732	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380732	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380732	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000534860	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000534860	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000534860	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380736	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000380736	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000380736	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000303025	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000303025	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000303025	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000413512	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000413512	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000413512	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000585672		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000382948		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000353909		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000491514	ENST00000591416		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3UTR	ENST00000491514	ENST00000339998		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000349085		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000269468		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000347968		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000269471		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000436910		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000590208		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000587605		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000588937		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000424334		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000585595		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000398495		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000457839		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000398493		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000591535		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-intron	ENST00000491514	ENST00000398488		ChiTaRS3.1			AK027253	ARHGAP6	chrX	11679223	-	MBD1	chr18	47796443	-
intron-3CDS	ENST00000339020	ENST00000339020		ChiTaRS3.1			BE931813	SMIM15	chr5	60456978	-	SMIM15	chr5	60455951	+
intron-3CDS	ENST00000339020	ENST00000507416		ChiTaRS3.1			BE931813	SMIM15	chr5	60456978	-	SMIM15	chr5	60455951	+
intron-3CDS	ENST00000507416	ENST00000339020		ChiTaRS3.1			BE931813	SMIM15	chr5	60456978	-	SMIM15	chr5	60455951	+
intron-3CDS	ENST00000507416	ENST00000507416		ChiTaRS3.1			BE931813	SMIM15	chr5	60456978	-	SMIM15	chr5	60455951	+
3UTR-3UTR	ENST00000343674	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000343674	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000343674	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000343674	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000532868	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000532868	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000532868	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000532868	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000528615	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000528615	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000528615	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000528615	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000395574	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000395574	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000395574	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000395574	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000543978	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000543978	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000543978	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000543978	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000527911	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000527911	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000527911	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000527911	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000456247	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000456247	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000456247	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000456247	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000421244	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000421244	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000421244	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000421244	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000318201	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000318201	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000318201	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000318201	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000454345	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-3UTR	ENST00000454345	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000454345	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
3UTR-intron	ENST00000454345	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000525434	ENST00000285208		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3UTR	ENST00000525434	ENST00000543906		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000525434	ENST00000469959		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-intron	ENST00000525434	ENST00000486858		ChiTaRS3.1			AI656073	DGKZ	chr11	46401998	-	RAB6B	chr3	133545158	+
intron-3CDS	ENST00000409185	ENST00000534894		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000536810		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000545257		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000355995		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000543371		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000355717		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000538897		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000349937		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000369397		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000352065		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000409185	ENST00000369395		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-5UTR	ENST00000409185	ENST00000542695		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000409185	ENST00000369389		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000409185	ENST00000369386		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000409185	ENST00000466338		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000534894		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000536810		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000545257		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000355995		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000543371		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000355717		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000538897		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000349937		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000369397		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000352065		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000389915	ENST00000369395		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-5UTR	ENST00000389915	ENST00000542695		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000389915	ENST00000369389		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000389915	ENST00000369386		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-intron	ENST00000389915	ENST00000466338		ChiTaRS3.1			BF923603	FAM168B	chr2	131806489	+	TCF7L2	chr10	114901011	+
intron-3CDS	ENST00000535648	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000535648	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000535648	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000346706	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000346706	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000340094	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000340094	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000345230	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000345230	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000350763	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000350763	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000341037	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000341037	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000423613	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000423613	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000537320	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000537320	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000542877	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000542877	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000535648		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000346706		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000340094		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000345230		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000350763		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000341037		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000423613		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000537320		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3CDS	ENST00000481475	ENST00000542877		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-intron	ENST00000481475	ENST00000481475		ChiTaRS3.1			BF770933	TNC	chr9	117786353	-	TNC	chr9	117793891	-
intron-3UTR	ENST00000376279	ENST00000223095		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000376279	ENST00000445463		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000376286	ENST00000223095		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000376286	ENST00000445463		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000376285	ENST00000223095		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000376285	ENST00000445463		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000485946	ENST00000223095		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-3UTR	ENST00000485946	ENST00000445463		ChiTaRS3.1			BG980943	PCCA	chr13	101119337	-	SERPINE1	chr7	100780774	-
intron-intron	ENST00000348261	ENST00000258526		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000348261	ENST00000547057		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000348261	ENST00000551495		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000348261	ENST00000545312		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000358590	ENST00000258526		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000358590	ENST00000547057		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000358590	ENST00000551495		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000358590	ENST00000545312		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000565831	ENST00000258526		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000565831	ENST00000547057		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000565831	ENST00000551495		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-intron	ENST00000565831	ENST00000545312		ChiTaRS3.1			BF749213	CACNA1H	chr16	1249951	-	PLXNC1	chr12	94599521	-
intron-3CDS	ENST00000255224	ENST00000308664		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000255224	ENST00000395494		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000255224	ENST00000539276		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000255224	ENST00000550248		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000255224	ENST00000552636		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000308664		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000395494		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000586678	ENST00000539276		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000586678	ENST00000550248		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000586678	ENST00000552636		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000308664		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000395494		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-3CDS	ENST00000590752	ENST00000539276		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000590752	ENST00000550248		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000590752	ENST00000552636		ChiTaRS3.1			DA390163	SYT4	chr18	40857245	-	ATP2A2	chr12	110783888	+
intron-intron	ENST00000493559	ENST00000542285		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
intron-intron	ENST00000493559	ENST00000602298		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
intron-intron	ENST00000608872	ENST00000542285		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
intron-intron	ENST00000608872	ENST00000602298		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
intron-intron	ENST00000340778	ENST00000542285		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
intron-intron	ENST00000340778	ENST00000602298		ChiTaRS3.1			AW866363	FBXW2	chr9	123548617	+	C1R	chr12	7187658	-
3UTR-3CDS	ENST00000478951	ENST00000314358		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000478951	ENST00000394866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000478951	ENST00000542866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000478951	ENST00000508386		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000393917	ENST00000314358		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000393917	ENST00000394866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000393917	ENST00000542866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000393917	ENST00000508386		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000273368	ENST00000314358		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000273368	ENST00000394866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000273368	ENST00000542866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000273368	ENST00000508386		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000455401	ENST00000314358		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000455401	ENST00000394866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000455401	ENST00000542866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000455401	ENST00000508386		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000486460	ENST00000314358		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-3CDS	ENST00000486460	ENST00000394866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000486460	ENST00000542866		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
3UTR-intron	ENST00000486460	ENST00000508386		ChiTaRS3.1			AI084093	TAGLN3	chr3	111732628	-	KDM3B	chr5	137727169	-
intron-intron	ENST00000297056	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000297056	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000425398	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000436575	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000428902	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000421761	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000297056		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000425398		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000436575		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000428902		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000421761		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000479922	ENST00000479922		ChiTaRS3.1			BG054903	DAGLB	chr7	6500918	+	DAGLB	chr7	6500984	-
intron-intron	ENST00000368842	ENST00000360319		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368842	ENST00000422373		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368842	ENST00000369850		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368842	ENST00000369856		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368842	ENST00000344736		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368842	ENST00000498491		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000360319		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000422373		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000369850		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000369856		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000344736		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000368839	ENST00000498491		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000360319		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000422373		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000369850		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000369856		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000344736		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000392757	ENST00000498491		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000360319		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000422373		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000369850		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000369856		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000344736		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000482963	ENST00000498491		ChiTaRS3.1			BE818193	LHPP	chr10	126285266	-	FLNA	chrX	153579626	-
intron-intron	ENST00000398665	ENST00000361866		ChiTaRS3.1			BF850053	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000398665	ENST00000498614		ChiTaRS3.1			BF850053	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000361866		ChiTaRS3.1			BF850053	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
intron-intron	ENST00000608122	ENST00000498614		ChiTaRS3.1			BF850053	DOT1L	chr19	2219943	-	COL6A1	chr21	47420141	-
3UTR-3UTR	ENST00000320954	ENST00000320954		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
3UTR-intron	ENST00000320954	ENST00000449224		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
3UTR-intron	ENST00000320954	ENST00000485310		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-3UTR	ENST00000449224	ENST00000320954		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-intron	ENST00000449224	ENST00000449224		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-intron	ENST00000449224	ENST00000485310		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-3UTR	ENST00000485310	ENST00000320954		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-intron	ENST00000485310	ENST00000449224		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-intron	ENST00000485310	ENST00000485310		ChiTaRS3.1			AW838093	CRTAP	chr3	33187620	-	CRTAP	chr3	33188746	-
intron-intron	ENST00000256852	ENST00000256852		ChiTaRS3.1			BM719303	RAX	chr18	56940199	+	RAX	chr18	56939752	-
intron-intron	ENST00000256852	ENST00000334889		ChiTaRS3.1			BM719303	RAX	chr18	56940199	+	RAX	chr18	56939752	-
intron-intron	ENST00000334889	ENST00000256852		ChiTaRS3.1			BM719303	RAX	chr18	56940199	+	RAX	chr18	56939752	-
intron-intron	ENST00000334889	ENST00000334889		ChiTaRS3.1			BM719303	RAX	chr18	56940199	+	RAX	chr18	56939752	-
intron-intron	ENST00000363840	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
5CDS-intron	ENST00000365524	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000364822	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000363859	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000385578	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000363146	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000364084	ENST00000390548		ChiTaRS3.1			DA971433	GAS5	chr1	173833508	-	IGHG1	chr14	106478578	-
intron-intron	ENST00000322342	ENST00000262325		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000592545		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000538556		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000312678		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000589344		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000537622		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000322342	ENST00000545922		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000262325		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000592545		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000538556		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000312678		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000589344		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000537622		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000537114	ENST00000545922		ChiTaRS3.1			BI018333	ZADH2	chr18	72912360	-	AP2B1	chr17	33980085	+
intron-intron	ENST00000437291	ENST00000541179		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000379749		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000379747		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000379743		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000379742		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000541481		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000437291	ENST00000497145		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000541179		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000379749		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000379747		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000379743		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000379742		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000541481		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000292907	ENST00000497145		ChiTaRS3.1			AJ707523	COX7A1	chr19	36643337	+	POSTN	chr13	38151779	-
intron-intron	ENST00000477874	ENST00000477874		ChiTaRS3.1			BU680693	IL17RA	chr22	17593555	-	IL17RA	chr22	17593497	+
intron-3UTR	ENST00000477874	ENST00000319363		ChiTaRS3.1			BU680693	IL17RA	chr22	17593555	-	IL17RA	chr22	17593497	+
3UTR-intron	ENST00000319363	ENST00000477874		ChiTaRS3.1			BU680693	IL17RA	chr22	17593555	-	IL17RA	chr22	17593497	+
3UTR-3UTR	ENST00000319363	ENST00000319363		ChiTaRS3.1			BU680693	IL17RA	chr22	17593555	-	IL17RA	chr22	17593497	+
intron-intron	ENST00000396368	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000396368	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000396368	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000540441	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000540441	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000540441	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000344181	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000344181	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000344181	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000551742	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000551742	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000551742	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000602337	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000602337	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000602337	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000548025	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000548025	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000548025	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000547936	ENST00000464097		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000547936	ENST00000372874		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-intron	ENST00000547936	ENST00000537820		ChiTaRS3.1			AW085123	KIAA0430	chr16	15705064	+	ADA	chr20	43266946	+
intron-3UTR	ENST00000331925	ENST00000331925		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000331925	ENST00000573283		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000331925	ENST00000575842		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000331925	ENST00000575087		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000573283	ENST00000331925		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000573283	ENST00000573283		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000573283	ENST00000575842		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000573283	ENST00000575087		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575842	ENST00000331925		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575842	ENST00000573283		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575842	ENST00000575842		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575842	ENST00000575087		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575087	ENST00000331925		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575087	ENST00000573283		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575087	ENST00000575842		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3UTR	ENST00000575087	ENST00000575087		ChiTaRS3.1			BF082083	ACTG1	chr17	79477358	+	ACTG1	chr17	79477496	-
intron-3CDS	ENST00000373382	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000373382	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000373382	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000373382	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000373382	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000373382	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000373382	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000263559	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000263559	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000263559	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000263559	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000263559	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000263559	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000263559	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000395098	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000395098	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000395098	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000395098	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000395098	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000395098	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000395098	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000546041	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000546041	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000546041	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000546041	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000546041	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000546041	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000546041	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000490696	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000490696	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000490696	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000490696	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000490696	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000490696	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000490696	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000541711	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000541711	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000541711	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000541711	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000541711	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000541711	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000541711	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000489794	ENST00000373382		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000489794	ENST00000263559		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000489794	ENST00000395098		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3CDS	ENST00000489794	ENST00000546041		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000489794	ENST00000490696		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000489794	ENST00000541711		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-5UTR	ENST00000489794	ENST00000489794		ChiTaRS3.1			BU507793	VPS26A	chr10	70916766	-	VPS26A	chr10	70916800	+
intron-3UTR	ENST00000504604	ENST00000258886		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
intron-intron	ENST00000504604	ENST00000560440		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
intron-intron	ENST00000504604	ENST00000559427		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
intron-3UTR	ENST00000264431	ENST00000258886		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
intron-intron	ENST00000264431	ENST00000560440		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
intron-intron	ENST00000264431	ENST00000559427		ChiTaRS3.1			AL117613	RAPGEF2	chr4	160256722	+	IREB2	chr15	78792464	+
In-frame	ENST00000533035	ENST00000533035		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
In-frame	ENST00000533035	ENST00000308110		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
5CDS-intron	ENST00000533035	ENST00000525006		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
In-frame	ENST00000308110	ENST00000533035		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
In-frame	ENST00000308110	ENST00000308110		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
5CDS-intron	ENST00000308110	ENST00000525006		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
intron-3CDS	ENST00000525006	ENST00000533035		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
intron-3CDS	ENST00000525006	ENST00000308110		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
intron-intron	ENST00000525006	ENST00000525006		ChiTaRS3.1			BM795493	MUS81	chr11	65633301	-	MUS81	chr11	65631070	+
intron-intron	ENST00000563675	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000563675	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
5UTR-intron	ENST00000541464	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000381414	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000396229	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000542583	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000219821	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000561503	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000563675		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000541464		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000381414		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000396229		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000542583		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000219821		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000561503		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
intron-intron	ENST00000564959	ENST00000564959		ChiTaRS3.1			AI344053	TMC5	chr16	19421962	-	TMC5	chr16	19498338	-
Frame-shit	ENST00000539719	ENST00000397527		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
Frame-shit	ENST00000539719	ENST00000342580		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
5CDS-intron	ENST00000539719	ENST00000476146		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
5CDS-intron	ENST00000539719	ENST00000397524		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
intron-3CDS	ENST00000490959	ENST00000397527		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
intron-3CDS	ENST00000490959	ENST00000342580		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
intron-intron	ENST00000490959	ENST00000476146		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
intron-intron	ENST00000490959	ENST00000397524		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
Frame-shit	ENST00000373428	ENST00000397527		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
Frame-shit	ENST00000373428	ENST00000342580		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
5CDS-intron	ENST00000373428	ENST00000476146		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
5CDS-intron	ENST00000373428	ENST00000397524		ChiTaRS3.1			BU160533	ZNF362	chr1	33741985	+	CEP250	chr20	34091817	+
intron-intron	ENST00000396062	ENST00000396062		ChiTaRS3.1			CV312623	FKBP3	chr14	45601525	+	FKBP3	chr14	45601466	-
intron-intron	ENST00000396062	ENST00000216330		ChiTaRS3.1			CV312623	FKBP3	chr14	45601525	+	FKBP3	chr14	45601466	-
intron-intron	ENST00000216330	ENST00000396062		ChiTaRS3.1			CV312623	FKBP3	chr14	45601525	+	FKBP3	chr14	45601466	-
intron-intron	ENST00000216330	ENST00000216330		ChiTaRS3.1			CV312623	FKBP3	chr14	45601525	+	FKBP3	chr14	45601466	-
intron-3UTR	ENST00000358951	ENST00000358951		ChiTaRS3.1			BI819513	RAB3GAP2	chr1	220324391	+	RAB3GAP2	chr1	220324347	-
intron-intron	ENST00000358951	ENST00000462353		ChiTaRS3.1			BI819513	RAB3GAP2	chr1	220324391	+	RAB3GAP2	chr1	220324347	-
intron-3UTR	ENST00000462353	ENST00000358951		ChiTaRS3.1			BI819513	RAB3GAP2	chr1	220324391	+	RAB3GAP2	chr1	220324347	-
intron-intron	ENST00000462353	ENST00000462353		ChiTaRS3.1			BI819513	RAB3GAP2	chr1	220324391	+	RAB3GAP2	chr1	220324347	-
3UTR-intron	ENST00000403681	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
3UTR-intron	ENST00000403681	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
3UTR-intron	ENST00000403681	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
3UTR-intron	ENST00000403681	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
3UTR-intron	ENST00000403681	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
3UTR-intron	ENST00000403681	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000541363	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393577	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000393578	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000425208	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000536545	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000487861		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000471583		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000487270		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000488612		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000390683		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000354636	ENST00000469165		ChiTaRS3.1			AF533653	HMGA2	chr12	66357844	+	RAD51B	chr14	68418832	+
intron-intron	ENST00000540275	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000540275	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000452085	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000537543	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000331677	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000359564	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000359867		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000396832		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000400206		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000403904		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000413574		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000405675		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-intron	ENST00000606265	ENST00000498529		ChiTaRS3.1			M62263	DSE	chr6	116596548	-	CSNK1E	chr22	38689528	-
intron-3UTR	ENST00000193403	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000193403	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000193403	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000193403	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000193403	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000193403	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000394419	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000394419	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000394419	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000394419	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000394419	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000394419	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000438964	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000438964	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000438964	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000438964	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000438964	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000438964	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000376839	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000376839	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000376839	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000376839	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000376839	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000376839	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000538545	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000538545	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000538545	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000538545	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000538545	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000538545	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000554508	ENST00000193403		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000554508	ENST00000394419		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000554508	ENST00000438964		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-3UTR	ENST00000554508	ENST00000376839		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000554508	ENST00000538545		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000554508	ENST00000554508		ChiTaRS3.1			BU619843	ACTN1	chr14	69341454	+	ACTN1	chr14	69341519	-
intron-intron	ENST00000357195	ENST00000538442		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000399150		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000252229		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000427115		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000442104		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000451603		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000546706		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000438954		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000458032		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000551950		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000437651		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000383514		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000551608		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000436531		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000436655		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000547574		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000400313		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000428416		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000549014		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000428059		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000451789		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000443156		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000357195	ENST00000551960		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000538442		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000399150		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000252229		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000427115		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000442104		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000451603		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000546706		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000438954		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000458032		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000551950		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000437651		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000383514		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000551608		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000436531		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000436655		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000547574		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000400313		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000428416		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000549014		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000428059		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000451789		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000443156		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000345514	ENST00000551960		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000538442		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000399150		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000252229		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000427115		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000442104		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000451603		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000546706		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000438954		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000458032		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000551950		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000437651		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000383514		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000551608		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000436531		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000436655		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000547574		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000400313		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000428416		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000549014		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000428059		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000451789		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000443156		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-intron	ENST00000443726	ENST00000551960		ChiTaRS3.1			EL582403	BCL11B	chr14	99655805	+	MICB	chr6	2586310	+
intron-3CDS	ENST00000597960	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000597960	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000597960	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000597960	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000597960	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000597960	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000610101	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000596558	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000222308	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000608443	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000597960		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000610101		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000596558		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000222308		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000608443		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-3CDS	ENST00000453489	ENST00000453489		ChiTaRS3.1			L37033	FKBP8	chr19	18652738	+	FKBP8	chr19	18652679	-
intron-intron	ENST00000339438	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000339438	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000438362	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000358528	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000261443	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000530886	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000369530	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000483407	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000409078		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000541859		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000541377		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000455322		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000397587		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000263710		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000545861		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000534699	ENST00000430234		ChiTaRS3.1			AW995863	CSDE1	chr1	115273251	+	CLASP1	chr2	122357878	+
intron-intron	ENST00000338316	ENST00000253363		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000361162		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000528062		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000407261		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000338316	ENST00000397370		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000338316	ENST00000463098		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000253363		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000361162		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000528062		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000407261		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000537121	ENST00000397370		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000537121	ENST00000463098		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000253363		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000361162		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000528062		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000407261		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-intron	ENST00000513693	ENST00000397370		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-5UTR	ENST00000513693	ENST00000463098		ChiTaRS3.1			AI809993	ADCY2	chr1	152005066	+	RBM39	chr20	34327092	+
intron-3UTR	ENST00000373886	ENST00000340990		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-3UTR	ENST00000373886	ENST00000436244		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-intron	ENST00000373886	ENST00000367254		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-3UTR	ENST00000263103	ENST00000340990		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-3UTR	ENST00000263103	ENST00000436244		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-intron	ENST00000263103	ENST00000367254		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-3UTR	ENST00000476684	ENST00000340990		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-3UTR	ENST00000476684	ENST00000436244		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-intron	ENST00000476684	ENST00000367254		ChiTaRS3.1			BF229163	BICC1	chr10	60510174	+	ADIPOR1	chr1	202910113	+
intron-intron	ENST00000448662	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000448662	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000431808	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000284776	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000437304	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000319471	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000449407	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000355634	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000393528	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000418609	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000448662		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000431808		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000284776		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000437304		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000319471		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000449407		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000355634		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000393528		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000418609		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000498125	ENST00000498125		ChiTaRS3.1			BE086843	SORBS2	chr4	186583307	-	SORBS2	chr4	186696557	-
intron-intron	ENST00000462705	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000462705	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000462705	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000393785	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000393785	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000393785	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000481632	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000481632	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000481632	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000471418	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000471418	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000471418	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000357258	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000357258	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000357258	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000464560	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000464560	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000464560	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000488663	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000488663	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000488663	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000474710	ENST00000222553		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000474710	ENST00000354289		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-intron	ENST00000474710	ENST00000484527		ChiTaRS3.1			BQ355873	ZBTB20	chr3	114424139	+	NAMPT	chr7	105891952	-
intron-3CDS	ENST00000496484	ENST00000262544		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000336714		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377475		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000496484	ENST00000377465		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000496484	ENST00000494645		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000262544		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000336714		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377475		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000253686	ENST00000377465		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000253686	ENST00000494645		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000262544		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000336714		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377475		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000449354	ENST00000377465		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000449354	ENST00000494645		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000262544		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000336714		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377475		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-3CDS	ENST00000444840	ENST00000377465		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000444840	ENST00000494645		ChiTaRS3.1			N34493	MRPS25	chr3	15093835	+	SEC23B	chr20	18505655	-
intron-intron	ENST00000312838	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000312838	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000312838	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000537718	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000537718	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000537718	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000541206	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000541206	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000541206	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000568683	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000568683	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000568683	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000567844	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000567844	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000567844	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000562499	ENST00000438284		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000562499	ENST00000431010		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-intron	ENST00000562499	ENST00000397056		ChiTaRS3.1			BU754413	RNF166	chr16	88763004	+	HRH1	chr3	11198003	-
intron-3CDS	ENST00000428149	ENST00000428149		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000428149	ENST00000429370		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000428149	ENST00000389568		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000428149	ENST00000417449		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000428149	ENST00000530933		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
Frame-shit	ENST00000429370	ENST00000428149		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
5CDS-intron	ENST00000429370	ENST00000429370		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
5CDS-intron	ENST00000429370	ENST00000389568		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
5CDS-intron	ENST00000429370	ENST00000417449		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
5CDS-intron	ENST00000429370	ENST00000530933		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-3CDS	ENST00000389568	ENST00000428149		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000389568	ENST00000429370		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000389568	ENST00000389568		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000389568	ENST00000417449		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000389568	ENST00000530933		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-3CDS	ENST00000417449	ENST00000428149		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000417449	ENST00000429370		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000417449	ENST00000389568		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000417449	ENST00000417449		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000417449	ENST00000530933		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-3CDS	ENST00000530933	ENST00000428149		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000530933	ENST00000429370		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000530933	ENST00000389568		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000530933	ENST00000417449		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000530933	ENST00000530933		ChiTaRS3.1			AK095523	ALKBH8	chr11	107373755	-	ALKBH8	chr11	107375681	-
intron-intron	ENST00000368194	ENST00000273009		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000368194	ENST00000360410		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000368194	ENST00000325385		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000368194	ENST00000409401		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000368194	ENST00000409307		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000368194	ENST00000470087		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000273009		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000360410		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000325385		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000409401		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000409307		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000487682	ENST00000470087		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000273009		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000360410		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000325385		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000409401		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000409307		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000361409	ENST00000470087		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000273009		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000360410		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000325385		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000409401		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000409307		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
intron-intron	ENST00000315174	ENST00000470087		ChiTaRS3.1			R87313	ARHGEF11	chr1	156983696	-	DIS3L2	chr2	233138042	-
5CDS-intron	ENST00000393196	ENST00000394121		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000393196	ENST00000264637		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000393196	ENST00000584985		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-3UTR	ENST00000393196	ENST00000450525		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000393196	ENST00000546243		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000336097	ENST00000394121		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000336097	ENST00000264637		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000336097	ENST00000584985		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-3UTR	ENST00000336097	ENST00000450525		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000336097	ENST00000546243		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000480143	ENST00000394121		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000480143	ENST00000264637		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000480143	ENST00000584985		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-3UTR	ENST00000480143	ENST00000450525		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000480143	ENST00000546243		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000511355	ENST00000394121		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000511355	ENST00000264637		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000511355	ENST00000584985		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-3UTR	ENST00000511355	ENST00000450525		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000511355	ENST00000546243		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000013034	ENST00000394121		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000013034	ENST00000264637		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000013034	ENST00000584985		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-3UTR	ENST00000013034	ENST00000450525		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
5CDS-intron	ENST00000013034	ENST00000546243		ChiTaRS3.1			BE765003	NME1	chr17	49233086	+	THRA	chr17	38246322	+
intron-intron	ENST00000377604	ENST00000361568		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000395523		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000324816		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000445576		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000437001		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000375137		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000375143		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000493548		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000412651		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000457509		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000550796		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547565		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000440533		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000445462		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000486923		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000550232		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000383152		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399665		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547646		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000551703		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399662		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399660		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000480985		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000467040		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000487203		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000423347		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000440507		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000551222		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000548089		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000424353		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000452304		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000459936		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000549741		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000383301		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399860		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000546871		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399859		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000399856		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000414356		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000452562		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000552922		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000549544		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000420778		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000427556		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000483049		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547891		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000525601		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547508		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000422988		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547309		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000552076		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000465052		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000438385		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000456497		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000377604	ENST00000547558		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000361568		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000395523		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000324816		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000445576		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000437001		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000375137		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000375143		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000493548		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000412651		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000457509		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000550796		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547565		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000440533		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000445462		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000486923		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000550232		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000383152		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399665		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547646		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000551703		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399662		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399660		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000480985		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000467040		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000487203		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000423347		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000440507		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000551222		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000548089		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000424353		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000452304		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000459936		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000549741		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000383301		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399860		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000546871		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399859		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000399856		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000414356		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000452562		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000552922		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000549544		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000420778		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000427556		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000483049		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547891		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000525601		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547508		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000422988		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547309		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000552076		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000465052		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000438385		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000456497		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000329236	ENST00000547558		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000361568		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000395523		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000324816		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000445576		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000437001		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000375137		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000375143		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000493548		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000412651		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000457509		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000550796		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547565		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000440533		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000445462		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000486923		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000550232		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000383152		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399665		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547646		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000551703		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399662		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399660		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000480985		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000467040		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000487203		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000423347		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000440507		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000551222		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000548089		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000424353		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000452304		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000459936		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000549741		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000383301		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399860		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000546871		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399859		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000399856		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000414356		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000452562		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000552922		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000549544		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000420778		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000427556		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000483049		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547891		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000525601		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547508		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000422988		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547309		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000552076		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000465052		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000438385		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000456497		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000345781	ENST00000547558		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000361568		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000395523		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000324816		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000445576		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000437001		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000375137		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000375143		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000493548		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000412651		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000457509		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000550796		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547565		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000440533		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000445462		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000486923		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000550232		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000383152		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399665		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547646		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000551703		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399662		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399660		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000480985		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000467040		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000487203		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000423347		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000440507		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000551222		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000548089		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000424353		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000452304		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000459936		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000549741		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000383301		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399860		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000546871		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399859		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000399856		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000414356		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000452562		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000552922		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000549544		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000420778		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000427556		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000483049		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547891		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000525601		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547508		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000422988		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547309		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000552076		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000465052		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000438385		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000456497		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000478410	ENST00000547558		ChiTaRS3.1			BG983393	RBM10	chrX	47036093	-	PPT2	chr6	3484740	+
intron-intron	ENST00000437198	ENST00000437198		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000420015		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000341484		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000539279		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000437198	ENST00000566021		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000437198		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000420015		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000341484		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000539279		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000420015	ENST00000566021		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000437198		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000420015		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000341484		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000539279		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000341484	ENST00000566021		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000437198		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000420015		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000341484		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000539279		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000539279	ENST00000566021		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000437198		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000420015		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000341484		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000539279		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000566021	ENST00000566021		ChiTaRS3.1			AW889893	PARN	chr16	14687611	+	PARN	chr16	14680135	+
intron-intron	ENST00000398576	ENST00000278426		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000398576	ENST00000528450		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000398576	ENST00000533515		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000278426		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000528450		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000323076	ENST00000533515		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000278426		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000528450		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000435666	ENST00000533515		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000278426		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000528450		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000460190	ENST00000533515		ChiTaRS3.1			AW573253	LCP1	chr13	46700167	+	SLC43A1	chr11	57256130	+
intron-intron	ENST00000543385	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000543385	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000336727	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000344733	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000382788	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000306648	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000338806	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000508158	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000543385		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000336727		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000344733		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000382788		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000306648		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000338806		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000508158		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
intron-intron	ENST00000538395	ENST00000538395		ChiTaRS3.1			BF908783	RGS12	chr4	3389317	-	RGS12	chr4	3388804	+
3UTR-intron	ENST00000254323	ENST00000261507		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
3UTR-intron	ENST00000254323	ENST00000393766		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
3UTR-intron	ENST00000254323	ENST00000504317		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
intron-intron	ENST00000440752	ENST00000261507		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
intron-intron	ENST00000440752	ENST00000393766		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
intron-intron	ENST00000440752	ENST00000504317		ChiTaRS3.1			BG979123	ZSWIM4	chr19	13942671	+	MSMO1	chr4	166249256	-
intron-3CDS	ENST00000215882	ENST00000215882		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-3CDS	ENST00000215882	ENST00000451283		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-5UTR	ENST00000215882	ENST00000461267		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-3CDS	ENST00000451283	ENST00000215882		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-3CDS	ENST00000451283	ENST00000451283		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-5UTR	ENST00000451283	ENST00000461267		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-3CDS	ENST00000461267	ENST00000215882		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-3CDS	ENST00000461267	ENST00000451283		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
intron-5UTR	ENST00000461267	ENST00000461267		ChiTaRS3.1			CA427923	SLC25A1	chr22	19163483	-	SLC25A1	chr22	19165262	-
5CDS-intron	ENST00000505330	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000505330	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000504381	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000504381	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000507488	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000507488	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000393221	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000393221	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000533801	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000533801	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000510168	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000510168	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000508532	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000508532	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000504948	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000504948	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000513801	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000513801	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000328560	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000328560	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000428331	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000428331	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000359644	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000359644	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000422190	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
5CDS-intron	ENST00000422190	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
intron-intron	ENST00000509150	ENST00000257290		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
intron-intron	ENST00000509150	ENST00000508170		ChiTaRS3.1			BQ311503	ATP2C1	chr3	130712838	-	PDGFRA	chr4	55009556	-
3UTR-intron	ENST00000368694	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000368694	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000495554	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000403433	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368690	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368687	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000327783		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000389125		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000399913		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000399914		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000535441		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000389124		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000399907		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000399909		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000309434		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
intron-intron	ENST00000368686	ENST00000472429		ChiTaRS3.1			BE825953	CHTOP	chr1	153618679	+	GRIK1	chr21	31151791	+
3UTR-intron	ENST00000235307	ENST00000547525		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
3UTR-intron	ENST00000235307	ENST00000550529		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
3UTR-intron	ENST00000235307	ENST00000261400		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
3UTR-intron	ENST00000235307	ENST00000332082		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
3UTR-intron	ENST00000235307	ENST00000549903		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
intron-intron	ENST00000367514	ENST00000547525		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
intron-intron	ENST00000367514	ENST00000550529		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
intron-intron	ENST00000367514	ENST00000261400		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
intron-intron	ENST00000367514	ENST00000332082		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
intron-intron	ENST00000367514	ENST00000549903		ChiTaRS3.1			BF841253	C1orf21	chr1	184595009	-	WSCD2	chr12	108526970	+
3UTR-3CDS	ENST00000533603	ENST00000382456		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000533603	ENST00000411763		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000533603	ENST00000292807		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000533603	ENST00000439647		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3UTR	ENST00000533603	ENST00000461733		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000358171	ENST00000382456		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000358171	ENST00000411763		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000358171	ENST00000292807		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000358171	ENST00000439647		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3UTR	ENST00000358171	ENST00000461733		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-3CDS	ENST00000530284	ENST00000382456		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-3CDS	ENST00000530284	ENST00000411763		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-3CDS	ENST00000530284	ENST00000292807		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-3CDS	ENST00000530284	ENST00000439647		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-3UTR	ENST00000530284	ENST00000461733		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000524558	ENST00000382456		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000524558	ENST00000411763		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000524558	ENST00000292807		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000524558	ENST00000439647		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3UTR	ENST00000524558	ENST00000461733		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000525876	ENST00000382456		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000525876	ENST00000411763		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000525876	ENST00000292807		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3CDS	ENST00000525876	ENST00000439647		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
3UTR-3UTR	ENST00000525876	ENST00000461733		ChiTaRS3.1			AA631243	SERPINH1	chr11	75283536	-	AP2M1	chr3	183899734	-
intron-intron	ENST00000589222	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000589222	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000407086	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000390652	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000408905	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588462	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585744	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000588874	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000589222		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000407086		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000390652		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000408905		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588462		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585744		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000588874		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-intron	ENST00000585812	ENST00000585812		ChiTaRS3.1			DN917633	BCAS3	chr17	59293039	-	BCAS3	chr17	59299626	-
intron-3UTR	ENST00000408874	ENST00000314392		ChiTaRS3.1			BF088423	MIR548H2	chr3	151398031	-	DPM2	chr9	130697892	+
intron-intron	ENST00000408874	ENST00000373110		ChiTaRS3.1			BF088423	MIR548H2	chr3	151398031	-	DPM2	chr9	130697892	+
intron-3UTR	ENST00000388999	ENST00000261254		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-intron	ENST00000388999	ENST00000541542		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-3UTR	ENST00000401500	ENST00000261254		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-intron	ENST00000401500	ENST00000541542		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-3UTR	ENST00000270301	ENST00000261254		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-intron	ENST00000270301	ENST00000541542		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-3UTR	ENST00000378860	ENST00000261254		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
intron-intron	ENST00000378860	ENST00000541542		ChiTaRS3.1			BF800113	WDR62	chr19	36593239	-	CCND2	chr12	4411492	+
Frame-shit	ENST00000297268	ENST00000297268		ChiTaRS3.1			AW384943	COL1A2	chr7	94057093	-	COL1A2	chr7	94058585	-
intron-intron	ENST00000014914	ENST00000314499		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000014914	ENST00000464503		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000014914	ENST00000342316		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000014914	ENST00000409420		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000542056	ENST00000314499		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000542056	ENST00000464503		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000542056	ENST00000342316		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-intron	ENST00000542056	ENST00000409420		ChiTaRS3.1			CV350233	GPRC5A	chr12	13045570	-	CSRNP3	chr2	166490580	+
intron-3UTR	ENST00000251047	ENST00000497571		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-3UTR	ENST00000251047	ENST00000542957		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-intron	ENST00000251047	ENST00000173785		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-intron	ENST00000251047	ENST00000469435		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-3UTR	ENST00000587940	ENST00000497571		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-3UTR	ENST00000587940	ENST00000542957		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-intron	ENST00000587940	ENST00000173785		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-intron	ENST00000587940	ENST00000469435		ChiTaRS3.1			BU625653	LMAN1	chr18	57013282	+	KLF6	chr10	3819868	+
intron-3UTR	ENST00000415708	ENST00000262056		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000415708	ENST00000551527		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000415708	ENST00000420463		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000415708	ENST00000416762		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-3UTR	ENST00000428395	ENST00000262056		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000428395	ENST00000551527		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000428395	ENST00000420463		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000428395	ENST00000416762		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-3UTR	ENST00000241502	ENST00000262056		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000241502	ENST00000551527		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000241502	ENST00000420463		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000241502	ENST00000416762		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-3UTR	ENST00000424384	ENST00000262056		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000424384	ENST00000551527		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000424384	ENST00000420463		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000424384	ENST00000416762		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-3UTR	ENST00000492360	ENST00000262056		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000492360	ENST00000551527		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000492360	ENST00000420463		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-intron	ENST00000492360	ENST00000416762		ChiTaRS3.1			BF882453	FYTTD1	chr3	197481885	+	EIF4B	chr12	53435318	+
intron-3CDS	ENST00000356327	ENST00000598742		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000356327	ENST00000221975		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000356327	ENST00000593863		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000351298	ENST00000598742		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000351298	ENST00000221975		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000351298	ENST00000593863		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000342215	ENST00000598742		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000342215	ENST00000221975		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000342215	ENST00000593863		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000340989	ENST00000598742		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000340989	ENST00000221975		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000340989	ENST00000593863		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000497307	ENST00000598742		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000497307	ENST00000221975		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
intron-3CDS	ENST00000497307	ENST00000593863		ChiTaRS3.1			BQ351523	PLD1	chr3	171510388	+	RPS19	chr19	42373208	-
Frame-shit	ENST00000223061	ENST00000454859		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
Frame-shit	ENST00000223061	ENST00000474289		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
Frame-shit	ENST00000223061	ENST00000528402		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
Frame-shit	ENST00000223061	ENST00000454591		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
In-frame	ENST00000223061	ENST00000368291		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
In-frame	ENST00000223061	ENST00000309620		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
Frame-shit	ENST00000223061	ENST00000430841		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
In-frame	ENST00000223061	ENST00000368289		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
Frame-shit	ENST00000223061	ENST00000531967		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
5CDS-intron	ENST00000223061	ENST00000488087		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000454859		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000474289		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000528402		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000454591		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000368291		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000309620		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000430841		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000368289		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-3CDS	ENST00000496269	ENST00000531967		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-intron	ENST00000496269	ENST00000488087		ChiTaRS3.1			BG413523	PCOLCE	chr7	100205637	-	ECHDC1	chr6	127636021	+
intron-intron	ENST00000360370	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000360370	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000360370	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000360370	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000360370	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000360370	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000346785	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000383598	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000315891	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000508835	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000423245		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000317905		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000420326		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000340830		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000584999		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000514023	ENST00000443199		ChiTaRS3.1			BF932613	SLC41A3	chr3	125725521	-	RECQL5	chr17	73637939	-
intron-intron	ENST00000284110	ENST00000493946		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-intron	ENST00000284110	ENST00000539281		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-5UTR	ENST00000284110	ENST00000369710		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-5UTR	ENST00000284110	ENST00000369713		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-intron	ENST00000578576	ENST00000493946		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-intron	ENST00000578576	ENST00000539281		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-5UTR	ENST00000578576	ENST00000369710		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-5UTR	ENST00000578576	ENST00000369713		ChiTaRS3.1			BC082963	HS3ST3A1	chr17	13505235	+	GSTO1	chr10	106014662	+
intron-3CDS	ENST00000367142	ENST00000367142		ChiTaRS3.1			AW515443	NUCKS1	chr1	205689661	+	NUCKS1	chr1	205687509	+
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			AW515443	NUCKS1	chr1	205689661	+	NUCKS1	chr1	205687509	+
intron-3CDS	ENST00000464938	ENST00000367142		ChiTaRS3.1			AW515443	NUCKS1	chr1	205689661	+	NUCKS1	chr1	205687509	+
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			AW515443	NUCKS1	chr1	205689661	+	NUCKS1	chr1	205687509	+
In-frame	ENST00000425117	ENST00000328735		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000425117	ENST00000330333		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000425117	ENST00000347667		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
5CDS-intron	ENST00000425117	ENST00000466122		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000394422	ENST00000328735		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000394422	ENST00000330333		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000394422	ENST00000347667		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
5CDS-intron	ENST00000394422	ENST00000466122		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371051	ENST00000328735		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371051	ENST00000330333		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371051	ENST00000347667		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
5CDS-intron	ENST00000371051	ENST00000466122		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371042	ENST00000328735		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371042	ENST00000330333		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
In-frame	ENST00000371042	ENST00000347667		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
5CDS-intron	ENST00000371042	ENST00000466122		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
intron-3CDS	ENST00000498179	ENST00000328735		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
intron-3CDS	ENST00000498179	ENST00000330333		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
intron-3CDS	ENST00000498179	ENST00000347667		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
intron-intron	ENST00000498179	ENST00000466122		ChiTaRS3.1			DA568103	UTP14A	chrX	129059088	+	BACE2	chr21	42598234	+
3UTR-3UTR	ENST00000358506	ENST00000358506		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000358506	ENST00000296122		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000358506	ENST00000395366		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000296122	ENST00000358506		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000296122	ENST00000296122		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000296122	ENST00000395366		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000395366	ENST00000358506		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000395366	ENST00000296122		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
3UTR-3UTR	ENST00000395366	ENST00000395366		ChiTaRS3.1			CF139633	PPP1CB	chr2	29023709	-	PPP1CB	chr2	29023244	+
intron-3CDS	ENST00000435532	ENST00000435532		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000435532	ENST00000338963		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000435532	ENST00000508342		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000435532	ENST00000506154		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000435532	ENST00000508075		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000338963	ENST00000435532		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000338963	ENST00000338963		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000338963	ENST00000508342		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000338963	ENST00000506154		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000338963	ENST00000508075		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508342	ENST00000435532		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508342	ENST00000338963		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508342	ENST00000508342		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508342	ENST00000506154		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000508342	ENST00000508075		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000506154	ENST00000435532		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000506154	ENST00000338963		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000506154	ENST00000508342		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000506154	ENST00000506154		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000506154	ENST00000508075		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508075	ENST00000435532		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508075	ENST00000338963		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508075	ENST00000508342		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-3CDS	ENST00000508075	ENST00000506154		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000508075	ENST00000508075		ChiTaRS3.1			BF815723	NEDD4	chr15	56126321	+	NEDD4	chr15	56130377	-
intron-intron	ENST00000339859	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000339859	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000408019	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000428547	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000394811	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000497106	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000422491	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000446906		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000377072		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000307729		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000377059		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000495130		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000377100		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000319786	ENST00000377091		ChiTaRS3.1			M79063	USP54	chr10	75350706	+	MLLT10	chr10	21945338	+
intron-intron	ENST00000411990	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000411990	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000411990	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000411990	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
3UTR-intron	ENST00000367080	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
3UTR-intron	ENST00000367080	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
3UTR-intron	ENST00000367080	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
3UTR-intron	ENST00000367080	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000367079	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000367079	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000367079	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000367079	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000545806	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000545806	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000545806	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000545806	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000541914	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000541914	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000541914	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000541914	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000473310	ENST00000323669		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000473310	ENST00000395606		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000473310	ENST00000357758		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-intron	ENST00000473310	ENST00000555621		ChiTaRS3.1			BE173373	PFKFB2	chr1	207250792	-	DDHD1	chr14	53509685	+
intron-3UTR	ENST00000262367	ENST00000262367		ChiTaRS3.1			BE701823	CREBBP	chr16	3776992	-	CREBBP	chr16	3777048	+
intron-intron	ENST00000262367	ENST00000382070		ChiTaRS3.1			BE701823	CREBBP	chr16	3776992	-	CREBBP	chr16	3777048	+
intron-3UTR	ENST00000382070	ENST00000262367		ChiTaRS3.1			BE701823	CREBBP	chr16	3776992	-	CREBBP	chr16	3777048	+
intron-intron	ENST00000382070	ENST00000382070		ChiTaRS3.1			BE701823	CREBBP	chr16	3776992	-	CREBBP	chr16	3777048	+
intron-intron	ENST00000355621	ENST00000355621		ChiTaRS3.1			U25433	UBE2H	chr7	129549153	+	UBE2H	chr7	129537021	+
intron-intron	ENST00000355621	ENST00000473814		ChiTaRS3.1			U25433	UBE2H	chr7	129549153	+	UBE2H	chr7	129537021	+
intron-intron	ENST00000473814	ENST00000355621		ChiTaRS3.1			U25433	UBE2H	chr7	129549153	+	UBE2H	chr7	129537021	+
intron-intron	ENST00000473814	ENST00000473814		ChiTaRS3.1			U25433	UBE2H	chr7	129549153	+	UBE2H	chr7	129537021	+
intron-intron	ENST00000372409	ENST00000526301		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000342115		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000528667		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000256578		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000358729		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000528454		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000372409	ENST00000393688		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000526301		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000342115		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000528667		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000256578		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000358729		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000528454		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
intron-intron	ENST00000479348	ENST00000393688		ChiTaRS3.1			BI021213	PCIF1	chr20	44566328	+	AMPD2	chr1	110174673	-
3UTR-3UTR	ENST00000248975	ENST00000248975		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000248975	ENST00000397492		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000248975	ENST00000471374		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000397492	ENST00000248975		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000397492	ENST00000397492		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000397492	ENST00000471374		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000471374	ENST00000248975		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000471374	ENST00000397492		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
3UTR-3UTR	ENST00000471374	ENST00000471374		ChiTaRS3.1			CN353393	YWHAH	chr22	32352965	+	YWHAH	chr22	32352829	-
intron-intron	ENST00000299381	ENST00000299381		ChiTaRS3.1			BE940443	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000299381	ENST00000470481		ChiTaRS3.1			BE940443	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000470481	ENST00000299381		ChiTaRS3.1			BE940443	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
intron-intron	ENST00000470481	ENST00000470481		ChiTaRS3.1			BE940443	ANAPC16	chr10	73768477	-	ANAPC16	chr10	73769207	-
3UTR-3CDS	ENST00000298556	ENST00000295470		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
3UTR-3CDS	ENST00000298556	ENST00000349655		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
3UTR-3CDS	ENST00000298556	ENST00000602300		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
3UTR-3CDS	ENST00000298556	ENST00000502762		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
3UTR-intron	ENST00000298556	ENST00000514511		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-3CDS	ENST00000462974	ENST00000295470		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-3CDS	ENST00000462974	ENST00000349655		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-3CDS	ENST00000462974	ENST00000602300		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-3CDS	ENST00000462974	ENST00000502762		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-intron	ENST00000462974	ENST00000514511		ChiTaRS3.1			BE467833	HPRT1	chrX	133634339	-	HNRNPDL	chr4	83349569	-
intron-5UTR	ENST00000331872	ENST00000331872		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000331872	ENST00000417584		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000331872	ENST00000311223		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000331872	ENST00000491322		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000331872	ENST00000339526		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000417584	ENST00000331872		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000417584	ENST00000417584		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000417584	ENST00000311223		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000417584	ENST00000491322		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000417584	ENST00000339526		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000311223	ENST00000331872		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000311223	ENST00000417584		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000311223	ENST00000311223		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000311223	ENST00000491322		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000311223	ENST00000339526		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000491322	ENST00000331872		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000491322	ENST00000417584		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000491322	ENST00000311223		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000491322	ENST00000491322		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000491322	ENST00000339526		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000339526	ENST00000331872		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000339526	ENST00000417584		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000339526	ENST00000311223		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000339526	ENST00000491322		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-5UTR	ENST00000339526	ENST00000339526		ChiTaRS3.1			W27933	GLUL	chr1	182353150	+	GLUL	chr1	182360867	-
intron-intron	ENST00000521891	ENST00000298834		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000426438		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000314845		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000533727		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000534300		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000458649		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000528950		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000521891	ENST00000529963		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000298834		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000426438		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000314845		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000533727		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000534300		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000458649		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000528950		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000517683	ENST00000529963		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000298834		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000426438		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000314845		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000533727		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000534300		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000458649		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000528950		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000050961	ENST00000529963		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000298834		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000426438		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000314845		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000533727		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000534300		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000458649		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000528950		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000455469	ENST00000529963		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000298834		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000426438		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000314845		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000533727		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000534300		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000458649		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000528950		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-intron	ENST00000518282	ENST00000529963		ChiTaRS3.1			AW389873	ZFHX4	chr8	77699520	-	AMBRA1	chr11	46496512	+
intron-3UTR	ENST00000419022	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000419022	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000419022	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000419022	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000419022	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000419022	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000419022	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000419022	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000419022	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379132	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379132	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379132	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379132	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379132	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379132	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379132	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379132	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379132	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379129	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379129	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379129	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379129	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379129	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379129	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379129	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379129	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379129	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379107	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379107	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379107	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379107	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379107	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379107	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379107	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379107	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379107	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000241001	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000241001	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000241001	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000241001	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000241001	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000241001	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000241001	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000241001	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000241001	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379115	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379115	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379115	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379115	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379115	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379115	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379115	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379115	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379115	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379111	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379111	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379111	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379111	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379111	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379111	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379111	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379111	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379111	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379123	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379123	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379123	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000379123	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379123	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379123	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379123	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379123	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000379123	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000533156	ENST00000419022		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000533156	ENST00000379132		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000533156	ENST00000379129		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-3UTR	ENST00000533156	ENST00000379107		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000533156	ENST00000241001		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000533156	ENST00000379115		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000533156	ENST00000379111		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000533156	ENST00000379123		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000533156	ENST00000533156		ChiTaRS3.1			EB361003	PAX6	chr11	31815220	+	PAX6	chr11	31810938	+
intron-intron	ENST00000340635	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000340635	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000360047	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000507116	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502484	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000546160	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000502575	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000358923	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503258	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000405755	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000317118	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000340635		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000360047		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000507116		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000502484		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000546160		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000502575		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000358923		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000503258		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000405755		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000317118		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-intron	ENST00000503947	ENST00000503947		ChiTaRS3.1			DW442273	PDE4D	chr5	58676441	-	PDE4D	chr5	58677175	-
intron-3UTR	ENST00000336735	ENST00000336735		ChiTaRS3.1			CA313743	SEL1L	chr14	81942180	+	SEL1L	chr14	81942293	-
intron-intron	ENST00000336735	ENST00000555824		ChiTaRS3.1			CA313743	SEL1L	chr14	81942180	+	SEL1L	chr14	81942293	-
intron-3UTR	ENST00000555824	ENST00000336735		ChiTaRS3.1			CA313743	SEL1L	chr14	81942180	+	SEL1L	chr14	81942293	-
intron-intron	ENST00000555824	ENST00000555824		ChiTaRS3.1			CA313743	SEL1L	chr14	81942180	+	SEL1L	chr14	81942293	-
intron-3CDS	ENST00000298229	ENST00000240316		ChiTaRS3.1			BF990573	INPPL1	chr11	71940704	-	COIL	chr17	55016435	+
intron-3CDS	ENST00000541756	ENST00000240316		ChiTaRS3.1			BF990573	INPPL1	chr11	71940704	-	COIL	chr17	55016435	+
intron-3CDS	ENST00000538751	ENST00000240316		ChiTaRS3.1			BF990573	INPPL1	chr11	71940704	-	COIL	chr17	55016435	+
intron-5UTR	ENST00000271651	ENST00000271651		ChiTaRS3.1			X82153	CTSK	chr1	150771751	+	CTSK	chr1	150780737	-
intron-intron	ENST00000271651	ENST00000480670		ChiTaRS3.1			X82153	CTSK	chr1	150771751	+	CTSK	chr1	150780737	-
intron-5UTR	ENST00000480670	ENST00000271651		ChiTaRS3.1			X82153	CTSK	chr1	150771751	+	CTSK	chr1	150780737	-
intron-intron	ENST00000480670	ENST00000480670		ChiTaRS3.1			X82153	CTSK	chr1	150771751	+	CTSK	chr1	150780737	-
5CDS-intron	ENST00000360184	ENST00000514747		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
5CDS-intron	ENST00000360184	ENST00000329540		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
5CDS-intron	ENST00000360184	ENST00000443375		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
5CDS-intron	ENST00000360184	ENST00000508298		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
intron-intron	ENST00000556791	ENST00000514747		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
intron-intron	ENST00000556791	ENST00000329540		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
intron-intron	ENST00000556791	ENST00000443375		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
intron-intron	ENST00000556791	ENST00000508298		ChiTaRS3.1			BM718563	DYNC1H1	chr14	102514253	+	FAM193B	chr5	176947814	-
Frame-shit	ENST00000372621	ENST00000544484		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372621	ENST00000357008		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372621	ENST00000309577		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372621	ENST00000544040		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
5CDS-intron	ENST00000372621	ENST00000540960		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000541520	ENST00000544484		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000541520	ENST00000357008		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000541520	ENST00000309577		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000541520	ENST00000544040		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
5CDS-intron	ENST00000541520	ENST00000540960		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000475060	ENST00000544484		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000475060	ENST00000357008		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000475060	ENST00000309577		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000475060	ENST00000544040		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-intron	ENST00000475060	ENST00000540960		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000543104	ENST00000544484		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000543104	ENST00000357008		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000543104	ENST00000309577		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-3CDS	ENST00000543104	ENST00000544040		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-intron	ENST00000543104	ENST00000540960		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372616	ENST00000544484		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372616	ENST00000357008		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372616	ENST00000309577		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
Frame-shit	ENST00000372616	ENST00000544040		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
5CDS-intron	ENST00000372616	ENST00000540960		ChiTaRS3.1			BQ363083	CTPS1	chr1	41475155	+	CHD4	chr12	6697492	+
intron-intron	ENST00000534358	ENST00000380338		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000534358	ENST00000355930		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000534358	ENST00000429426		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000534358	ENST00000475957		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000534358	ENST00000380321		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000389506	ENST00000380338		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000389506	ENST00000355930		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000389506	ENST00000429426		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000389506	ENST00000475957		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000389506	ENST00000380321		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000354520	ENST00000380338		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000354520	ENST00000355930		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000354520	ENST00000429426		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000354520	ENST00000475957		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000354520	ENST00000380321		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000420751	ENST00000380338		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000420751	ENST00000355930		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000420751	ENST00000429426		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000420751	ENST00000475957		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000420751	ENST00000380321		ChiTaRS3.1			AY282396	KMT2A	chr11	118359134	+	MLLT3	chr9	20410551	-
intron-intron	ENST00000393386	ENST00000271588		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000393386	ENST00000367492		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000393386	ENST00000485744		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000449182	ENST00000271588		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000449182	ENST00000367492		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000449182	ENST00000485744		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000483028	ENST00000271588		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000483028	ENST00000367492		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-intron	ENST00000483028	ENST00000485744		ChiTaRS3.1			BG958283	PTPRZ1	chr7	121598613	-	HMCN1	chr1	185991008	+
intron-3CDS	ENST00000340635	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000340635	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000340635	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000340635	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000360047	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000360047	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000360047	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000360047	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000507116	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000507116	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000507116	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000507116	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000502484	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502484	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000502484	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000502484	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000546160	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000546160	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000546160	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000546160	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000502575	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000502575	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000502575	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000502575	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000358923	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000358923	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000358923	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000358923	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000503258	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503258	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000503258	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000503258	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000405755	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000405755	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000405755	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000405755	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000317118	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000317118	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000317118	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000317118	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3CDS	ENST00000503947	ENST00000376462		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000481700		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000458595		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000376454		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000376452		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000430453		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000307544		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000503947	ENST00000396446		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000503947	ENST00000396445		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-3UTR	ENST00000503947	ENST00000376451		ChiTaRS3.1			BF917173	PDE4D	chr5	58445976	-	KIAA1217	chr10	24835095	+
intron-intron	ENST00000410075	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-intron	ENST00000410075	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000410075	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000410075	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000410075	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000410075	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-intron	ENST00000377802	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-intron	ENST00000377802	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000377802	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000377802	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000377802	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-3UTR	ENST00000377802	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-intron	ENST00000355812	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-intron	ENST00000355812	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-3UTR	ENST00000355812	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-3UTR	ENST00000355812	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-3UTR	ENST00000355812	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
3UTR-3UTR	ENST00000355812	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000409544	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000409544	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409544	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409544	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409544	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409544	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000264447	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000264447	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000264447	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000264447	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000264447	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000264447	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000409407	ENST00000410075		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-intron	ENST00000409407	ENST00000377802		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409407	ENST00000355812		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409407	ENST00000409544		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409407	ENST00000264447		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
5CDS-3UTR	ENST00000409407	ENST00000409407		ChiTaRS3.1			AW939263	ZNF638	chr2	71660409	+	ZNF638	chr2	71661998	-
intron-intron	ENST00000302764	ENST00000257749		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000302764	ENST00000537989		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000302764	ENST00000343122		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000302764	ENST00000470301		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000517501	ENST00000257749		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000517501	ENST00000537989		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000517501	ENST00000343122		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000517501	ENST00000470301		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000519395	ENST00000257749		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000519395	ENST00000537989		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000519395	ENST00000343122		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000519395	ENST00000470301		ChiTaRS3.1			AA737193	NUDCD2	chr5	162887049	+	BACH2	chr6	90644826	+
intron-intron	ENST00000262160	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000262160	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000402690	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000356825	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000586040	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000591214	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000393799		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000530427		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000393800		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000534534		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000524845		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000265637		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000524904		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000393801		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000265636		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000529710		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-intron	ENST00000587353	ENST00000527403		ChiTaRS3.1			CV405453	SMAD2	chr18	45431045	+	PPP6R3	chr11	68274481	-
intron-3CDS	ENST00000357155	ENST00000556508		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000357155	ENST00000453495		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000357155	ENST00000414716		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000357155	ENST00000418279		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000477962	ENST00000556508		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000477962	ENST00000453495		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000477962	ENST00000414716		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-3CDS	ENST00000477962	ENST00000418279		ChiTaRS3.1			BF842553	MYBPHL	chr1	109844615	+	CEP170B	chr14	105356063	-
intron-intron	ENST00000261798	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000261798	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000377843	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515435	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000504676	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515768	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606719	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000606299	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000261798		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000377843		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000515435		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000504676		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000515768		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000606719		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000606299		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000515748	ENST00000515748		ChiTaRS3.1			AW265513	CSNK1A1	chr5	148896480	-	CSNK1A1	chr5	148896619	+
intron-intron	ENST00000433119	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000433119	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000295757	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402259	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000402271	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000446613	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404548	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000404040	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000405025	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000522202	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000437379	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000433119		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000295757		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000402259		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000402271		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000446613		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000404548		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000404040		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000405025		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000522202		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000437379		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000495099	ENST00000495099		ChiTaRS3.1			CV385793	HDAC11	chr3	13537032	-	HDAC11	chr3	13537186	+
intron-intron	ENST00000263857	ENST00000198536		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000263857	ENST00000453419		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000263857	ENST00000394000		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000263857	ENST00000350573		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-3UTR	ENST00000263857	ENST00000474013		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000409681	ENST00000198536		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000409681	ENST00000453419		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000409681	ENST00000394000		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000409681	ENST00000350573		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-3UTR	ENST00000409681	ENST00000474013		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000483538	ENST00000198536		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000483538	ENST00000453419		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000483538	ENST00000394000		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-intron	ENST00000483538	ENST00000350573		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
intron-3UTR	ENST00000483538	ENST00000474013		ChiTaRS3.1			BE550643	POLR1A	chr2	86268989	-	PILRA	chr7	99973792	+
5UTR-3CDS	ENST00000344921	ENST00000344921		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000263121		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407422		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000344921	ENST00000407082		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000344921	ENST00000477836		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000344921		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000263121		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407422		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000263121	ENST00000407082		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000263121	ENST00000477836		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000344921		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000263121		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407422		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407422	ENST00000407082		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407422	ENST00000477836		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000344921		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000263121		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407422		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-3CDS	ENST00000407082	ENST00000407082		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
5UTR-intron	ENST00000407082	ENST00000477836		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000344921		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000263121		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407422		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000477836	ENST00000407082		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-intron	ENST00000477836	ENST00000477836		ChiTaRS3.1			BF088153	SMARCB1	chr22	24129341	-	SMARCB1	chr22	24175848	-
intron-3CDS	ENST00000351747	ENST00000327671		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000351747	ENST00000518672		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000351747	ENST00000524021		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000351747	ENST00000335589		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000351747	ENST00000518076		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000327671		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000518672		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000462713	ENST00000524021		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000462713	ENST00000335589		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000462713	ENST00000518076		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000327671		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000518672		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000344804	ENST00000524021		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000344804	ENST00000335589		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000344804	ENST00000518076		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000327671		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000518672		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000389536	ENST00000524021		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000389536	ENST00000335589		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000389536	ENST00000518076		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000327671		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000518672		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000311202	ENST00000524021		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000311202	ENST00000335589		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-intron	ENST00000311202	ENST00000518076		ChiTaRS3.1			AI656013	DNAH12	chr3	57496708	+	FUT10	chr8	33230162	+
intron-3CDS	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911173	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911173	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-3CDS	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911173	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911173	ECH1	chr19	39306170	+	ECH1	chr19	39307135	-
intron-intron	ENST00000221561	ENST00000244230		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000498451		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000221561	ENST00000468427		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000244230		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000498451		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
5CDS-intron	ENST00000327141	ENST00000468427		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000244230		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000498451		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000592330	ENST00000468427		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000244230		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000498451		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
intron-intron	ENST00000586839	ENST00000468427		ChiTaRS3.1			BE835123	AES	chr19	3053161	-	MPHOSPH10	chr2	71362676	+
In-frame	ENST00000550746	ENST00000550746		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000550746	ENST00000319106		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000550746	ENST00000485960		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000550746	ENST00000393309		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
5CDS-intron	ENST00000550746	ENST00000548679		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000319106	ENST00000550746		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000319106	ENST00000319106		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000319106	ENST00000485960		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000319106	ENST00000393309		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
5CDS-intron	ENST00000319106	ENST00000548679		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000485960	ENST00000550746		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000485960	ENST00000319106		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000485960	ENST00000485960		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000485960	ENST00000393309		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
5CDS-intron	ENST00000485960	ENST00000548679		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000393309	ENST00000550746		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
Frame-shit	ENST00000393309	ENST00000319106		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000393309	ENST00000485960		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
In-frame	ENST00000393309	ENST00000393309		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
5CDS-intron	ENST00000393309	ENST00000548679		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-3CDS	ENST00000548679	ENST00000550746		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-3CDS	ENST00000548679	ENST00000319106		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-3CDS	ENST00000548679	ENST00000485960		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-3CDS	ENST00000548679	ENST00000393309		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-intron	ENST00000548679	ENST00000548679		ChiTaRS3.1			BM469813	TBC1D15	chr12	72316850	-	TBC1D15	chr12	72316926	+
intron-3CDS	ENST00000552551	ENST00000340790		ChiTaRS3.1			BC007663	KRT8	chr12	53342917	-	PALM3	chr19	14165785	-
intron-3CDS	ENST00000293308	ENST00000340790		ChiTaRS3.1			BC007663	KRT8	chr12	53342917	-	PALM3	chr19	14165785	-
intron-3CDS	ENST00000546897	ENST00000340790		ChiTaRS3.1			BC007663	KRT8	chr12	53342917	-	PALM3	chr19	14165785	-
intron-3CDS	ENST00000552150	ENST00000340790		ChiTaRS3.1			BC007663	KRT8	chr12	53342917	-	PALM3	chr19	14165785	-
intron-3CDS	ENST00000549198	ENST00000340790		ChiTaRS3.1			BC007663	KRT8	chr12	53342917	-	PALM3	chr19	14165785	-
intron-intron	ENST00000341500	ENST00000341500		ChiTaRS3.1			CV356203	INSR	chr19	7149202	-	INSR	chr19	7252893	-
intron-intron	ENST00000341500	ENST00000302850		ChiTaRS3.1			CV356203	INSR	chr19	7149202	-	INSR	chr19	7252893	-
intron-intron	ENST00000302850	ENST00000341500		ChiTaRS3.1			CV356203	INSR	chr19	7149202	-	INSR	chr19	7252893	-
intron-intron	ENST00000302850	ENST00000302850		ChiTaRS3.1			CV356203	INSR	chr19	7149202	-	INSR	chr19	7252893	-
intron-3CDS	ENST00000339788	ENST00000339788		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000339788	ENST00000320816		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000339788	ENST00000545653		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000339788	ENST00000509337		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000339788	ENST00000512525		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000320816	ENST00000339788		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000320816	ENST00000320816		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000320816	ENST00000545653		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000320816	ENST00000509337		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000320816	ENST00000512525		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000545653	ENST00000339788		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000545653	ENST00000320816		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000545653	ENST00000545653		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000545653	ENST00000509337		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000545653	ENST00000512525		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000509337	ENST00000339788		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000509337	ENST00000320816		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000509337	ENST00000545653		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000509337	ENST00000509337		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000509337	ENST00000512525		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000512525	ENST00000339788		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000512525	ENST00000320816		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000512525	ENST00000545653		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-3CDS	ENST00000512525	ENST00000509337		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000512525	ENST00000512525		ChiTaRS3.1			BQ369293	DAB2	chr5	39377384	+	DAB2	chr5	39376972	-
intron-intron	ENST00000371470	ENST00000269886		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000371470	ENST00000598564		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000371470	ENST00000417295		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000371466	ENST00000269886		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000371466	ENST00000598564		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000371466	ENST00000417295		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000462941	ENST00000269886		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000462941	ENST00000598564		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000462941	ENST00000417295		ChiTaRS3.1			AK130943	MAGOH	chr1	53700865	-	SH3GL1	chr19	4384856	-
intron-intron	ENST00000315684	ENST00000537875		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000315684	ENST00000309791		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000315684	ENST00000297848		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000315684	ENST00000247781		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000315684	ENST00000432943		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000581671	ENST00000537875		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000581671	ENST00000309791		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000581671	ENST00000297848		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000581671	ENST00000247781		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
intron-intron	ENST00000581671	ENST00000432943		ChiTaRS3.1			AW813893	CTC1	chr17	8147839	+	COL14A1	chr8	121261462	+
3UTR-3UTR	ENST00000373055	ENST00000344423		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000373055	ENST00000523202		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000373055	ENST00000523095		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000373055	ENST00000519730		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-3UTR	ENST00000327331	ENST00000344423		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000327331	ENST00000523202		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000327331	ENST00000523095		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
3UTR-intron	ENST00000327331	ENST00000519730		ChiTaRS3.1			BG014393	CDCA8	chr1	38174663	+	ZNF395	chr8	28204817	+
intron-intron	ENST00000322366	ENST00000421239		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000322366	ENST00000596382		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000295888	ENST00000421239		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000295888	ENST00000596382		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000512267	ENST00000421239		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000512267	ENST00000596382		ChiTaRS3.1			R47413	WDFY3	chr4	85634225	+	ZNF578	chr19	52994298	+
intron-intron	ENST00000253408	ENST00000265394		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000396276		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000409850		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000253408	ENST00000488891		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000265394		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000396276		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000409850		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000588735	ENST00000488891		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000265394		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000396276		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000409850		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000435360	ENST00000488891		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000265394		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000396276		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000409850		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000586793	ENST00000488891		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000265394		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000396276		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000409850		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-intron	ENST00000591327	ENST00000488891		ChiTaRS3.1			U07223	GFAP	chr17	42992858	+	CPVL	chr7	29234575	+
intron-3UTR	ENST00000513040	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000513040	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000513040	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000513040	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000513040	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000285689	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000285689	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000285689	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000285689	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000285689	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000515200	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000515200	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000515200	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000515200	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000515200	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000544396	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000544396	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000544396	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000544396	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000544396	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000542322	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000542322	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000542322	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000542322	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000542322	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000514932	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000514932	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000514932	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000514932	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000514932	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000543198	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000543198	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000543198	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000543198	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000543198	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000502348	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000502348	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000502348	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000502348	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000502348	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000511134	ENST00000331872		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000511134	ENST00000417584		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000511134	ENST00000311223		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-5UTR	ENST00000511134	ENST00000491322		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3UTR	ENST00000511134	ENST00000339526		ChiTaRS3.1			BF925573	GRAMD3	chr5	125827422	+	GLUL	chr1	182352256	-
intron-3CDS	ENST00000340802	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000340802	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000340802	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000340802	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000340802	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000340802	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000340802	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000359794	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000359794	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000359794	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000359794	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000359794	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000359794	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000359794	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000551548	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000551548	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551548	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551548	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551548	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551548	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551548	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000395233	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000395233	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000395233	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000395233	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000395233	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000395233	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000395233	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000551804	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000551804	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551804	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551804	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551804	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551804	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000551804	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000547587	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000547587	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000547587	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000547587	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000547587	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000547587	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000547587	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000312352	ENST00000340802		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-3CDS	ENST00000312352	ENST00000359794		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000312352	ENST00000551548		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000312352	ENST00000395233		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000312352	ENST00000551804		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000312352	ENST00000547587		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000312352	ENST00000312352		ChiTaRS3.1			BX537703	PFKM	chr12	48535350	-	PFKM	chr12	48535108	+
intron-intron	ENST00000454300	ENST00000313334		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000489308		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000472944		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000484036		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000454300	ENST00000533836		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000313334		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000489308		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000472944		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000484036		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000263635	ENST00000533836		ChiTaRS3.1			AW975923	TANC1	chr2	159860919	+	BTF3L4	chr1	52551840	-
intron-intron	ENST00000398896	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398896	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398898	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000417901	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000453664	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398892	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000398888	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000434032	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000423007		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000404875		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000341012		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000372228		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000419118		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000402686		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000541219		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000354713		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
intron-intron	ENST00000488993	ENST00000485278		ChiTaRS3.1			CR977283	USP19	chr3	49148480	-	POMT1	chr9	134385504	+
5CDS-intron	ENST00000254108	ENST00000547303		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000254108	ENST00000551116		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000254108	ENST00000346473		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000254108	ENST00000552740		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000380244	ENST00000547303		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000380244	ENST00000551116		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000380244	ENST00000346473		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000380244	ENST00000552740		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000568685	ENST00000547303		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000568685	ENST00000551116		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000568685	ENST00000346473		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
5CDS-intron	ENST00000568685	ENST00000552740		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
intron-intron	ENST00000474990	ENST00000547303		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
intron-intron	ENST00000474990	ENST00000551116		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
intron-intron	ENST00000474990	ENST00000346473		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
intron-intron	ENST00000474990	ENST00000552740		ChiTaRS3.1			AJ301613	FUS	chr16	31202431	+	DDIT3	chr12	57912902	-
intron-intron	ENST00000335762	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000335762	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399655	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000480911	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399644	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000344100	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399638	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399629	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399597	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000327702	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399621	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399649	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399637	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000402845	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399591	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399641	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000347598	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399606	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399595	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399601	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399603	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399634	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000399617	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000406454	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000335762		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399655		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000480911		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399644		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000344100		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399638		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399629		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399597		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000327702		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399621		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399649		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399637		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000402845		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399591		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399641		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000347598		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399606		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399595		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399601		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399603		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399634		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000399617		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000406454		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000491104	ENST00000491104		ChiTaRS3.1			BF869543	CACNA1C	chr12	2529276	-	CACNA1C	chr12	2553124	+
intron-intron	ENST00000181839	ENST00000456731		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000367537		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000508461		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000347615		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000507469		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000515829		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000181839	ENST00000507406		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000456731		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000367537		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000508461		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000347615		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000507469		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000515829		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000340829	ENST00000507406		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000456731		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000367537		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000508461		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000347615		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000507469		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000515829		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000484589	ENST00000507406		ChiTaRS3.1			BI014023	CDK13	chr7	40042752	-	SMG7	chr1	183512092	+
intron-intron	ENST00000543385	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000543385	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000543385	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000543385	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000336727	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000336727	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000336727	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000336727	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000344733	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000344733	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000344733	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000344733	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000382788	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000382788	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000382788	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000382788	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000306648	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000306648	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000306648	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000306648	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000338806	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000338806	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000338806	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000338806	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000508158	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000508158	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000508158	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000508158	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000538395	ENST00000339656		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000538395	ENST00000423137		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000538395	ENST00000419854		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000538395	ENST00000596433		ChiTaRS3.1			T05253	RGS12	chr4	3295499	+	ZNF587	chr19	58307020	+
intron-intron	ENST00000264663	ENST00000257821		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000264663	ENST00000323180		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000264663	ENST00000418153		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000264663	ENST00000527753		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000344920	ENST00000257821		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000344920	ENST00000323180		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000344920	ENST00000418153		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000344920	ENST00000527753		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000512996	ENST00000257821		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000512996	ENST00000323180		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000512996	ENST00000418153		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000512996	ENST00000527753		ChiTaRS3.1			AI444583	NNT	chr5	43681582	-	PHF21A	chr11	45966921	+
intron-intron	ENST00000376030	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376030	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000503743	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000422387	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000361144	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400798	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000167462		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000375227		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000392550		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000578363		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000400797	ENST00000577200		ChiTaRS3.1			AI655823	KAZN	chr1	15071423	-	LLGL2	chr17	73570556	-
intron-intron	ENST00000376462	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376462	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000481700	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000481700	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000458595	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000458595	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376454	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376454	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376452	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376452	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000430453	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000430453	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000307544	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000307544	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000396446	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000396446	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000396445	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000396445	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376451	ENST00000220496		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000376451	ENST00000558727		ChiTaRS3.1			BF091043	KIAA1217	chr10	24824992	+	DNAJC17	chr15	41064303	-
intron-intron	ENST00000512438	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000512438	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000512438	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000512438	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000512438	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000512438	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000610009	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000610009	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000610009	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000610009	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000610009	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000610009	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000502693	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000502693	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000502693	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000502693	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000502693	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000502693	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000499430	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000499430	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000499430	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000499430	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000499430	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000499430	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000507244	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000507244	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000507244	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000507244	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000507244	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000507244	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000514763	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000514763	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000514763	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000514763	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000514763	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000514763	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000608184	ENST00000579226		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000608184	ENST00000217652		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-5UTR	ENST00000608184	ENST00000578611		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000608184	ENST00000585090		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000608184	ENST00000580887		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000608184	ENST00000536605		ChiTaRS3.1			BF825733	STX18-AS1	chr4	4628757	-	MYL12A	chr18	3247826	+
intron-intron	ENST00000401642	ENST00000401642		ChiTaRS3.1			BF368683	SCFD2	chr4	53768134	-	SCFD2	chr4	53770359	-
intron-intron	ENST00000401642	ENST00000388940		ChiTaRS3.1			BF368683	SCFD2	chr4	53768134	-	SCFD2	chr4	53770359	-
intron-intron	ENST00000388940	ENST00000401642		ChiTaRS3.1			BF368683	SCFD2	chr4	53768134	-	SCFD2	chr4	53770359	-
intron-intron	ENST00000388940	ENST00000388940		ChiTaRS3.1			BF368683	SCFD2	chr4	53768134	-	SCFD2	chr4	53770359	-
Frame-shit	ENST00000442011	ENST00000442011		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
Frame-shit	ENST00000442011	ENST00000305126		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
5CDS-intron	ENST00000442011	ENST00000508076		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
5CDS-intron	ENST00000442011	ENST00000504185		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
Frame-shit	ENST00000305126	ENST00000442011		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
Frame-shit	ENST00000305126	ENST00000305126		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
5CDS-intron	ENST00000305126	ENST00000508076		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
5CDS-intron	ENST00000305126	ENST00000504185		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-3CDS	ENST00000508076	ENST00000442011		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-3CDS	ENST00000508076	ENST00000305126		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-intron	ENST00000508076	ENST00000508076		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-intron	ENST00000508076	ENST00000504185		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-3CDS	ENST00000504185	ENST00000442011		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-3CDS	ENST00000504185	ENST00000305126		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-intron	ENST00000504185	ENST00000508076		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-intron	ENST00000504185	ENST00000504185		ChiTaRS3.1			CN483753	TGFBI	chr5	135391487	+	TGFBI	chr5	135382990	+
intron-intron	ENST00000286091	ENST00000286091		ChiTaRS3.1			BF762833	PDIA4	chr7	148709411	-	PDIA4	chr11	63392184	+
3UTR-3CDS	ENST00000361682	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000361682	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000361682	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-5UTR	ENST00000361682	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000361682	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3CDS	ENST00000403184	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403184	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403184	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-5UTR	ENST00000403184	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403184	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3CDS	ENST00000403710	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403710	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403710	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-5UTR	ENST00000403710	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000403710	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3CDS	ENST00000407537	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000407537	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000407537	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-5UTR	ENST00000407537	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000407537	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3CDS	ENST00000406520	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000406520	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000406520	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-5UTR	ENST00000406520	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000406520	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-3CDS	ENST00000449653	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000449653	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000449653	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-5UTR	ENST00000449653	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
3UTR-intron	ENST00000449653	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3CDS	ENST00000493893	ENST00000368378		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000493893	ENST00000541576		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000493893	ENST00000457183		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-5UTR	ENST00000493893	ENST00000541990		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-intron	ENST00000493893	ENST00000486260		ChiTaRS3.1			AW340773	COMT	chr22	19957168	-	THBS3	chr1	155177604	+
intron-3UTR	ENST00000426016	ENST00000426016		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000426016	ENST00000402219		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000426016	ENST00000395038		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000426016	ENST00000428721		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000426016	ENST00000472480		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000402219	ENST00000426016		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000402219	ENST00000402219		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000402219	ENST00000395038		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000402219	ENST00000428721		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000402219	ENST00000472480		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000395038	ENST00000426016		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000395038	ENST00000402219		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000395038	ENST00000395038		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000395038	ENST00000428721		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000395038	ENST00000472480		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000428721	ENST00000426016		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000428721	ENST00000402219		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000428721	ENST00000395038		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000428721	ENST00000428721		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000428721	ENST00000472480		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000472480	ENST00000426016		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-3UTR	ENST00000472480	ENST00000402219		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000472480	ENST00000395038		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000472480	ENST00000428721		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000472480	ENST00000472480		ChiTaRS3.1			CA503093	SOS1	chr2	39208993	+	SOS1	chr2	39209056	-
intron-intron	ENST00000199389	ENST00000414150		ChiTaRS3.1			DA730893	EIF2AK1	chr7	6077124	-	MROH7-TTC4	chr1	55181545	+
intron-intron	ENST00000536084	ENST00000414150		ChiTaRS3.1			DA730893	EIF2AK1	chr7	6077124	-	MROH7-TTC4	chr1	55181545	+
intron-intron	ENST00000495565	ENST00000414150		ChiTaRS3.1			DA730893	EIF2AK1	chr7	6077124	-	MROH7-TTC4	chr1	55181545	+
intron-intron	ENST00000300880	ENST00000300880		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000300880	ENST00000449228		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000300880	ENST00000341983		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000300880	ENST00000439096		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000449228	ENST00000300880		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000449228	ENST00000449228		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000449228	ENST00000341983		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000449228	ENST00000439096		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000341983	ENST00000300880		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000341983	ENST00000449228		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000341983	ENST00000341983		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000341983	ENST00000439096		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000439096	ENST00000300880		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000439096	ENST00000449228		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000439096	ENST00000341983		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
intron-intron	ENST00000439096	ENST00000439096		ChiTaRS3.1			BE003123	BBC3	chr19	47725330	-	BBC3	chr19	47733364	-
3UTR-3UTR	ENST00000324000	ENST00000324000		ChiTaRS3.1			CA773823	ST8SIA3	chr18	55030334	-	ST8SIA3	chr18	55028520	+
3UTR-intron	ENST00000324000	ENST00000590600		ChiTaRS3.1			CA773823	ST8SIA3	chr18	55030334	-	ST8SIA3	chr18	55028520	+
intron-3UTR	ENST00000590600	ENST00000324000		ChiTaRS3.1			CA773823	ST8SIA3	chr18	55030334	-	ST8SIA3	chr18	55028520	+
intron-intron	ENST00000590600	ENST00000590600		ChiTaRS3.1			CA773823	ST8SIA3	chr18	55030334	-	ST8SIA3	chr18	55028520	+
intron-3UTR	ENST00000377194	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377194	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377194	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377194	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377194	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377194	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377199	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377199	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377199	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377199	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000377199	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000377199	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000498117	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000498117	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000498117	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000498117	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000498117	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000498117	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000459807	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000459807	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000459807	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000459807	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000459807	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000459807	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000412687	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000412687	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000412687	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000412687	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000412687	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000412687	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437160	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437160	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437160	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437160	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437160	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437160	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000427689	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000427689	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000427689	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000427689	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000427689	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000427689	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000435528	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000435528	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000435528	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000435528	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000435528	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000435528	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000485666	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000485666	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000485666	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000485666	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000485666	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000485666	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468364	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468364	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468364	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468364	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468364	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468364	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000455861	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000455861	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000455861	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000455861	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000455861	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000455861	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000417660	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000417660	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000417660	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000417660	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000417660	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000417660	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000400720	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000400720	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000400720	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000400720	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000400720	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000400720	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000495323	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000495323	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000495323	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000495323	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000495323	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000495323	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000491158	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000491158	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000491158	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000491158	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000491158	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000491158	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437415	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437415	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437415	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437415	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000437415	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000437415	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468047	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468047	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468047	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468047	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000468047	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000468047	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000431123	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000431123	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000431123	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000431123	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000431123	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000431123	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000452265	ENST00000462284		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000452265	ENST00000356290		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000452265	ENST00000540827		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000452265	ENST00000258149		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3UTR	ENST00000452265	ENST00000428863		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000393412		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000258148		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000544561		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000393410		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000393413		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000517852		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000545204		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000350057		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000360430		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000299252		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000348801		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000478070		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-intron	ENST00000452265	ENST00000544125		ChiTaRS3.1			BX485283	TRIM27	chr6	214414	-	MDM2	chr12	69234138	+
intron-3CDS	ENST00000215912	ENST00000215912		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000215912	ENST00000441972		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000215912	ENST00000487265		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-intron	ENST00000215912	ENST00000402249		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3CDS	ENST00000441972	ENST00000215912		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000441972	ENST00000441972		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000441972	ENST00000487265		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-intron	ENST00000441972	ENST00000402249		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3CDS	ENST00000487265	ENST00000215912		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000487265	ENST00000441972		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000487265	ENST00000487265		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-intron	ENST00000487265	ENST00000402249		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3CDS	ENST00000402249	ENST00000215912		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000402249	ENST00000441972		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-3UTR	ENST00000402249	ENST00000487265		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-intron	ENST00000402249	ENST00000402249		ChiTaRS3.1			BE178423	PIK3IP1	chr22	31678749	+	PIK3IP1	chr22	31679081	-
intron-5UTR	ENST00000602661	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-3UTR	ENST00000602661	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
3UTR-5UTR	ENST00000223528	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
3UTR-3UTR	ENST00000223528	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-5UTR	ENST00000540160	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-3UTR	ENST00000540160	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-5UTR	ENST00000448551	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-3UTR	ENST00000448551	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-5UTR	ENST00000357998	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-3UTR	ENST00000357998	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-5UTR	ENST00000490134	ENST00000468844		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
intron-3UTR	ENST00000490134	ENST00000361575		ChiTaRS3.1			BF848943	FKTN	chr9	108401945	-	RPL39	chrX	118920621	-
In-frame	ENST00000375441	ENST00000375441		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000451881		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000326335		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375441	ENST00000375440		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000375441	ENST00000463426		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000375441		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000451881		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000326335		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000451881	ENST00000375440		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000451881	ENST00000463426		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000375441		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000451881		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000326335		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000326335	ENST00000375440		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000326335	ENST00000463426		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000375441		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000451881		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000326335		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
In-frame	ENST00000375440	ENST00000375440		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
5CDS-intron	ENST00000375440	ENST00000463426		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000375441		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000451881		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000326335		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-3CDS	ENST00000463426	ENST00000375440		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-intron	ENST00000463426	ENST00000463426		ChiTaRS3.1			BF327003	CUL4A	chr13	113909032	-	CUL4A	chr13	113909351	+
intron-intron	ENST00000338702	ENST00000319555		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-intron	ENST00000338702	ENST00000569086		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-intron	ENST00000542639	ENST00000319555		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-intron	ENST00000542639	ENST00000569086		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-intron	ENST00000497485	ENST00000319555		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-intron	ENST00000497485	ENST00000569086		ChiTaRS3.1			BG995293	MAOA	chrX	43579427	-	ZFPM1	chr16	88578326	-
intron-3CDS	ENST00000369061	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369061	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369061	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369061	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369061	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000357555	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000357555	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000357555	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000357555	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000358487	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000358487	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000358487	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000358487	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000356226	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000356226	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000356226	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000356226	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369060	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369060	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369060	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369060	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369059	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369059	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369059	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369059	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000346997	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000346997	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000346997	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000346997	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000457416	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000457416	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000457416	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000457416	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000351936	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000351936	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000351936	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000351936	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000360144	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000360144	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000360144	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000360144	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000369056	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369056	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369056	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000369056	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000490349	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000490349	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000490349	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000490349	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000359354	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000359354	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000359354	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000359354	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000369061		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000357555		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000358487		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000356226		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000369060		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000369059		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000346997		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000457416		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000351936		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000360144		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000478859	ENST00000369056		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000478859	ENST00000490349		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000478859	ENST00000359354		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-intron	ENST00000478859	ENST00000478859		ChiTaRS3.1			BG984043	FGFR2	chr10	123263358	-	FGFR2	chr10	123256081	+
intron-3CDS	ENST00000434377	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000434377	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000434377	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000434377	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000434377	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000434377	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000434377	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000434377	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000434377	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000434377	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3CDS	ENST00000454319	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3CDS	ENST00000454319	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000454319	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000454319	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000454319	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000454319	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000454319	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000454319	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000454319	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000454319	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3CDS	ENST00000493391	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3CDS	ENST00000493391	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000493391	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000493391	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000493391	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000493391	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-3UTR	ENST00000493391	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000493391	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000493391	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
5UTR-intron	ENST00000493391	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000392170	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000392170	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000392170	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000392170	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000392170	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000392170	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000392170	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000392170	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000392170	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000392170	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000424129	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000424129	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000424129	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000424129	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000424129	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000424129	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000424129	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000424129	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000424129	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000424129	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000472909	ENST00000371191		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3CDS	ENST00000472909	ENST00000407417		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000472909	ENST00000479364		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000472909	ENST00000371189		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000472909	ENST00000403491		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000472909	ENST00000371187		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-3UTR	ENST00000472909	ENST00000485903		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000472909	ENST00000371185		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000472909	ENST00000371184		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000472909	ENST00000357977		ChiTaRS3.1			DA063553	ZNF566	chr19	36980388	-	NFIA	chr1	61743191	+
intron-intron	ENST00000340855	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000340855	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000537071	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000541269	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000422081	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370441	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000490775	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000370443	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000427113	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000340855		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000537071		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000541269		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000422081		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000370441		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000490775		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000370443		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000427113		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000428056	ENST00000428056		ChiTaRS3.1			AW628693	IDS	chrX	148593151	+	IDS	chrX	148571844	+
intron-intron	ENST00000331159	ENST00000331159		ChiTaRS3.1			AW305363	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000331159	ENST00000577233		ChiTaRS3.1			AW305363	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000577233	ENST00000331159		ChiTaRS3.1			AW305363	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000577233	ENST00000577233		ChiTaRS3.1			AW305363	SOCS7	chr17	36561695	-	SOCS7	chr17	36561576	+
intron-intron	ENST00000370532	ENST00000370532		ChiTaRS3.1			DA074713	CDR1	chrX	139866825	+	CDR1	chrX	139865330	+
intron-5UTR	ENST00000548589	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
intron-intron	ENST00000548589	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-5UTR	ENST00000552699	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-intron	ENST00000552699	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-5UTR	ENST00000267115	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-intron	ENST00000267115	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-5UTR	ENST00000549385	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-intron	ENST00000549385	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-5UTR	ENST00000423828	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-intron	ENST00000423828	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-5UTR	ENST00000395006	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
5CDS-intron	ENST00000395006	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
intron-5UTR	ENST00000547798	ENST00000389912		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
intron-intron	ENST00000547798	ENST00000557612		ChiTaRS3.1			DB253863	TMBIM6	chr12	50146329	+	COX16	chr14	70826428	-
intron-3CDS	ENST00000555577	ENST00000539229		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000555577	ENST00000316367		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000555577	ENST00000342456		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000555577	ENST00000007633		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3UTR	ENST00000555577	ENST00000434449		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370649	ENST00000539229		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370649	ENST00000316367		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370649	ENST00000342456		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370649	ENST00000007633		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3UTR	ENST00000370649	ENST00000434449		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370631	ENST00000539229		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370631	ENST00000316367		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370631	ENST00000342456		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3CDS	ENST00000370631	ENST00000007633		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-3UTR	ENST00000370631	ENST00000434449		ChiTaRS3.1			AK129943	PI4K2A	chr10	99374414	+	ALDH3B1	chr11	67787229	+
intron-intron	ENST00000305208	ENST00000305208		ChiTaRS3.1			J04093	UGT1A8	chr2	234601557	-	UGT1A8	chr2	234601642	+
intron-3CDS	ENST00000444376	ENST00000394077		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
intron-3CDS	ENST00000444376	ENST00000495401		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
intron-intron	ENST00000444376	ENST00000469605		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
intron-3CDS	ENST00000283179	ENST00000394077		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
intron-3CDS	ENST00000283179	ENST00000495401		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
intron-intron	ENST00000283179	ENST00000469605		ChiTaRS3.1			D13413	HNRNPU	chr1	245027013	-	RPL24	chr3	101400026	-
5UTR-3CDS	ENST00000379028	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379028	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379028	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000413765	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000413765	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000351718	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000351718	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379024	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379024	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-3CDS	ENST00000379022	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-5UTR	ENST00000379022	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000425651	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-5UTR	ENST00000425651	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000426128		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000388728		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000257694		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000422087		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000453144		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-3CDS	ENST00000522550	ENST00000436062		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
intron-5UTR	ENST00000522550	ENST00000483879		ChiTaRS3.1			DB472533	NRCAM	chr7	108039879	-	PNPLA8	chr7	108143088	-
5UTR-intron	ENST00000457580	ENST00000457580		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000457580	ENST00000388793		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000457580	ENST00000432932		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000457580	ENST00000347433		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000388793	ENST00000457580		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000388793	ENST00000388793		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000388793	ENST00000432932		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000388793	ENST00000347433		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000432932	ENST00000457580		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000432932	ENST00000388793		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000432932	ENST00000432932		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000432932	ENST00000347433		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000347433	ENST00000457580		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000347433	ENST00000388793		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000347433	ENST00000432932		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
5UTR-intron	ENST00000347433	ENST00000347433		ChiTaRS3.1			AA779653	SRRT	chr7	100472890	-	SRRT	chr7	100480234	-
intron-3CDS	ENST00000537871	ENST00000291386		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
intron-intron	ENST00000537871	ENST00000359060		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
In-frame	ENST00000439013	ENST00000291386		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
5CDS-intron	ENST00000439013	ENST00000359060		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
In-frame	ENST00000255688	ENST00000291386		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
5CDS-intron	ENST00000255688	ENST00000359060		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
In-frame	ENST00000354445	ENST00000291386		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
5CDS-intron	ENST00000354445	ENST00000359060		ChiTaRS3.1			BG212153	RARRES3	chr11	63307017	+	SSU72	chr1	1479348	-
intron-3UTR	ENST00000306773	ENST00000306773		ChiTaRS3.1			DB469323	NPTX1	chr17	78442069	-	NPTX1	chr17	78443347	-
intron-intron	ENST00000306773	ENST00000575212		ChiTaRS3.1			DB469323	NPTX1	chr17	78442069	-	NPTX1	chr17	78443347	-
intron-3UTR	ENST00000575212	ENST00000306773		ChiTaRS3.1			DB469323	NPTX1	chr17	78442069	-	NPTX1	chr17	78443347	-
intron-intron	ENST00000575212	ENST00000575212		ChiTaRS3.1			DB469323	NPTX1	chr17	78442069	-	NPTX1	chr17	78443347	-
intron-intron	ENST00000398590	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000398590	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000295900	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000295900	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000487717	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000487717	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000538065	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000538065	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000484332	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000484332	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000488239	ENST00000264613		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
intron-intron	ENST00000488239	ENST00000462336		ChiTaRS3.1			BG945303	ATXN7	chr3	63950706	-	CP	chr3	148911232	+
3UTR-intron	ENST00000551025	ENST00000390548		ChiTaRS3.1			DA973963	CASP8AP2	chr6	90566906	+	IGHG1	chr14	106539563	-
3UTR-3UTR	ENST00000394155	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394155	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394155	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394155	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000394155	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370690	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370690	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370690	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370690	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000370690	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000535737	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000535737	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000535737	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000535737	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000535737	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000543669	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000543669	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000543669	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000543669	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000543669	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394153	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394153	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394153	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000394153	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000394153	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000345434	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000345434	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000345434	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000345434	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000345434	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000539015	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000539015	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000539015	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000539015	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000539015	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370683	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370683	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370683	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-3UTR	ENST00000370683	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
3UTR-intron	ENST00000370683	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000370676	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000370676	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000370676	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000370676	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-intron	ENST00000370676	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000477080	ENST00000513942		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000477080	ENST00000344627		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000477080	ENST00000262018		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3UTR	ENST00000477080	ENST00000543315		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-intron	ENST00000477080	ENST00000451235		ChiTaRS3.1			AJ710343	FHL1	chrX	135293107	-	SGCA	chr17	48252641	+
intron-3CDS	ENST00000366794	ENST00000366794		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-5UTR	ENST00000366794	ENST00000490921		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366794	ENST00000366792		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366794	ENST00000366791		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366794	ENST00000366790		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-3CDS	ENST00000490921	ENST00000366794		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-5UTR	ENST00000490921	ENST00000490921		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000490921	ENST00000366792		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000490921	ENST00000366791		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000490921	ENST00000366790		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-3CDS	ENST00000366792	ENST00000366794		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-5UTR	ENST00000366792	ENST00000490921		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366792	ENST00000366792		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366792	ENST00000366791		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366792	ENST00000366790		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-3CDS	ENST00000366791	ENST00000366794		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-5UTR	ENST00000366791	ENST00000490921		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366791	ENST00000366792		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366791	ENST00000366791		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366791	ENST00000366790		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-3CDS	ENST00000366790	ENST00000366794		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-5UTR	ENST00000366790	ENST00000490921		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366790	ENST00000366792		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366790	ENST00000366791		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000366790	ENST00000366790		ChiTaRS3.1			AI380553	PARP1	chr1	226579974	+	PARP1	chr1	226552748	+
intron-intron	ENST00000220592	ENST00000511685		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000220592	ENST00000406950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000220592	ENST00000502950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000519980	ENST00000511685		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000519980	ENST00000406950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000519980	ENST00000502950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000517293	ENST00000511685		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000517293	ENST00000406950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000517293	ENST00000502950		ChiTaRS3.1			BG001653	AGO2	chr8	141531441	+	TENM3	chr4	183465352	-
intron-intron	ENST00000492607	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000492607	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000326442	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000326442	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000447204	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000447204	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000434545	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000434545	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000429904	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000429904	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000450753	ENST00000296215		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000450753	ENST00000468040		ChiTaRS3.1			BF871123	TMEM176B	chr7	150490188	-	SNIP1	chr1	38018714	-
intron-intron	ENST00000534358	ENST00000437099		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000323816		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000432992		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000540214		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000585266		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000580865		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000583882		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000542249		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000396115		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000579158		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000534358	ENST00000578655		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000437099		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000323816		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000432992		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000540214		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000585266		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000580865		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000583882		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000542249		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000396115		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000579158		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000389506	ENST00000578655		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000437099		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000323816		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000432992		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000540214		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000585266		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000580865		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000583882		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000542249		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000396115		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000579158		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000354520	ENST00000578655		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000437099		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000323816		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000432992		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000540214		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000585266		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000580865		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000583882		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000542249		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000396115		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000579158		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000420751	ENST00000578655		ChiTaRS3.1			AF231993	KMT2A	chr11	118357206	+	GAS7	chr17	9953491	-
intron-intron	ENST00000228740	ENST00000338316		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000228740	ENST00000537121		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000228740	ENST00000513693		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000552789	ENST00000338316		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000552789	ENST00000537121		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000552789	ENST00000513693		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000413268	ENST00000338316		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000413268	ENST00000537121		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000413268	ENST00000513693		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000548375	ENST00000338316		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000548375	ENST00000537121		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-intron	ENST00000548375	ENST00000513693		ChiTaRS3.1			BE875453	LTA4H	chr12	96400145	-	ADCY2	chr1	152005144	-
intron-3UTR	ENST00000367669	ENST00000436383		ChiTaRS3.1			C16953	RFWD2	chr1	176110013	-	LINC00707	chr10	6882754	+
intron-3UTR	ENST00000308769	ENST00000436383		ChiTaRS3.1			C16953	RFWD2	chr1	176110013	-	LINC00707	chr10	6882754	+
intron-intron	ENST00000305877	ENST00000425967		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000397091		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000447712		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000341462		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000532791		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000397113		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000356207		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000335922		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000326324		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000397103		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000397108		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000305877	ENST00000496629		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000425967		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000397091		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000447712		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000341462		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000532791		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000397113		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000356207		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000335922		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000326324		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000397103		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000397108		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000359540	ENST00000496629		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000425967		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000397091		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000447712		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000341462		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000532791		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000397113		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000356207		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000335922		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000326324		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000397103		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000397108		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000398512	ENST00000496629		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000425967		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000397091		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000447712		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000341462		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000532791		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000397113		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000356207		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000335922		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000326324		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000397103		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000397108		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-intron	ENST00000436990	ENST00000496629		ChiTaRS3.1			AJ298918	BCR	chr22	23606792	+	FGFR1	chr8	38277025	-
intron-3CDS	ENST00000390237	ENST00000333813		ChiTaRS3.1			R48793	IGKC	chr2	89156787	+	TUSC5	chr17	1183416	-
intron-3CDS	ENST00000434640	ENST00000434640		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380368		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380375		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000434640	ENST00000380379		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000434640	ENST00000464040		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000434640		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380368		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380375		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380368	ENST00000380379		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380368	ENST00000464040		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000434640		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380368		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380375		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380375	ENST00000380379		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380375	ENST00000464040		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000434640		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380368		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380375		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-3CDS	ENST00000380379	ENST00000380379		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
5UTR-intron	ENST00000380379	ENST00000464040		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000434640		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380368		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380375		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-3CDS	ENST00000464040	ENST00000380379		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000464040	ENST00000464040		ChiTaRS3.1			AI701823	BPHL	chr6	3118961	-	BPHL	chr6	3127582	+
intron-intron	ENST00000359895	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000359895	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000359895	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000359895	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000359895	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000359895	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000356618	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355841	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000505746	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000393551	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000359895		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000356618		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000355841		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000505746		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000393551		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000355572	ENST00000355572		ChiTaRS3.1			Z28913	PDLIM7	chr5	176917322	+	PDLIM7	chr5	176924602	-
intron-intron	ENST00000585421	ENST00000467933		ChiTaRS3.1			AI797303	TIMP2	chr17	76849204	+	SRGAP2B	chr1	144049329	-
intron-intron	ENST00000536189	ENST00000467933		ChiTaRS3.1			AI797303	TIMP2	chr17	76849204	+	SRGAP2B	chr1	144049329	-
intron-intron	ENST00000262768	ENST00000467933		ChiTaRS3.1			AI797303	TIMP2	chr17	76849204	+	SRGAP2B	chr1	144049329	-
intron-intron	ENST00000586057	ENST00000467933		ChiTaRS3.1			AI797303	TIMP2	chr17	76849204	+	SRGAP2B	chr1	144049329	-
intron-intron	ENST00000486975	ENST00000400546		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000486975	ENST00000284894		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000486975	ENST00000535285		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000486975	ENST00000486367		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000451576	ENST00000400546		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000451576	ENST00000284894		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000451576	ENST00000535285		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-intron	ENST00000451576	ENST00000486367		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000064724	ENST00000400546		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000064724	ENST00000284894		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000064724	ENST00000535285		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000064724	ENST00000486367		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000489485	ENST00000400546		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000489485	ENST00000284894		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000489485	ENST00000535285		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
3UTR-intron	ENST00000489485	ENST00000486367		ChiTaRS3.1			AF068863	CLDN11	chr3	170150671	+	NCAM2	chr21	22628643	+
intron-3UTR	ENST00000405995	ENST00000262061		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000405995	ENST00000549043		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000552218		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000553231		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000552362		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000405995	ENST00000455864		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000405995	ENST00000416254		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000405995	ENST00000549116		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000551779		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000548281		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000405995	ENST00000548753		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000357304	ENST00000262061		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000357304	ENST00000549043		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000552218		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000553231		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000552362		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000357304	ENST00000455864		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000357304	ENST00000416254		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000357304	ENST00000549116		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000551779		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000548281		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000357304	ENST00000548753		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000458550	ENST00000262061		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000458550	ENST00000549043		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000552218		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000553231		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000552362		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000458550	ENST00000455864		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000458550	ENST00000416254		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000458550	ENST00000549116		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000551779		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000548281		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000458550	ENST00000548753		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000372249	ENST00000262061		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000372249	ENST00000549043		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000552218		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000553231		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000552362		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000372249	ENST00000455864		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000372249	ENST00000416254		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000372249	ENST00000549116		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000551779		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000548281		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000372249	ENST00000548753		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000465931	ENST00000262061		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000465931	ENST00000549043		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000552218		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000553231		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000552362		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000465931	ENST00000455864		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000465931	ENST00000416254		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3UTR	ENST00000465931	ENST00000549116		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000551779		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000548281		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-intron	ENST00000465931	ENST00000548753		ChiTaRS3.1			CV337403	PRRC2B	chr9	134365992	-	COPZ1	chr12	54744536	+
intron-3CDS	ENST00000405409	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000405409	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000405409	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000405409	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000414461	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000414461	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000414461	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000414461	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000449924	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000449924	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000449924	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000449924	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000262829	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000262829	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000262829	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000262829	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000397303	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000397303	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000397303	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000397303	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000359369	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000359369	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000359369	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000359369	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000416721	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000416721	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000416721	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000416721	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000438146	ENST00000369799		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000438146	ENST00000475081		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000438146	ENST00000359172		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-intron	ENST00000438146	ENST00000393614		ChiTaRS3.1			AA830163	RBFOX2	chr22	36234400	+	AHCYL1	chr1	110561072	+
intron-3CDS	ENST00000160373	ENST00000160373		ChiTaRS3.1			AW753433	CTTNBP2	chr7	117400633	+	CTTNBP2	chr7	117400583	-
intron-intron	ENST00000160373	ENST00000487820		ChiTaRS3.1			AW753433	CTTNBP2	chr7	117400633	+	CTTNBP2	chr7	117400583	-
intron-3CDS	ENST00000487820	ENST00000160373		ChiTaRS3.1			AW753433	CTTNBP2	chr7	117400633	+	CTTNBP2	chr7	117400583	-
intron-intron	ENST00000487820	ENST00000487820		ChiTaRS3.1			AW753433	CTTNBP2	chr7	117400633	+	CTTNBP2	chr7	117400583	-
intron-3UTR	ENST00000550629	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000465950	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000369367	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000549162	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000419565	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000395454	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
intron-3UTR	ENST00000395453	ENST00000534336		ChiTaRS3.1			BI060233	SCAF11	chr12	46332533	-	MALAT1	chr11	65272342	-
Frame-shit	ENST00000309424	ENST00000309424		ChiTaRS3.1			BQ423643	CD3EAP	chr19	45912259	-	CD3EAP	chr19	45912320	+
Frame-shit	ENST00000309424	ENST00000589804		ChiTaRS3.1			BQ423643	CD3EAP	chr19	45912259	-	CD3EAP	chr19	45912320	+
Frame-shit	ENST00000589804	ENST00000309424		ChiTaRS3.1			BQ423643	CD3EAP	chr19	45912259	-	CD3EAP	chr19	45912320	+
In-frame	ENST00000589804	ENST00000589804		ChiTaRS3.1			BQ423643	CD3EAP	chr19	45912259	-	CD3EAP	chr19	45912320	+
intron-3CDS	ENST00000370363	ENST00000369144		ChiTaRS3.1			BE706163	OOEP	chr6	74083034	+	EIF3A	chr10	120816367	-
intron-3CDS	ENST00000370363	ENST00000541549		ChiTaRS3.1			BE706163	OOEP	chr6	74083034	+	EIF3A	chr10	120816367	-
intron-3CDS	ENST00000370359	ENST00000369144		ChiTaRS3.1			BE706163	OOEP	chr6	74083034	+	EIF3A	chr10	120816367	-
intron-3CDS	ENST00000370359	ENST00000541549		ChiTaRS3.1			BE706163	OOEP	chr6	74083034	+	EIF3A	chr10	120816367	-
intron-intron	ENST00000547956	ENST00000354532		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000547956	ENST00000599846		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000547956	ENST00000596957		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000547956	ENST00000347545		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000547956	ENST00000378152		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000547956	ENST00000337665		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000354532		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000599846		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000596957		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000347545		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000378152		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000549260	ENST00000337665		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000354532		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000599846		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000596957		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000347545		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000378152		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000303694	ENST00000337665		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000354532		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000599846		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000596957		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000347545		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000378152		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000546689	ENST00000337665		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000354532		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000599846		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000596957		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000347545		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000378152		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-intron	ENST00000550711	ENST00000337665		ChiTaRS3.1			CB270023	CHST11	chr12	105120868	-	ARHGEF1	chr19	42402495	+
intron-3CDS	ENST00000418756	ENST00000439590		ChiTaRS3.1			BC046153	PMS2P3	chr7	75144011	-	RPL38	chr17	72205948	+
intron-3CDS	ENST00000418756	ENST00000311111		ChiTaRS3.1			BC046153	PMS2P3	chr7	75144011	-	RPL38	chr17	72205948	+
intron-3CDS	ENST00000418756	ENST00000584577		ChiTaRS3.1			BC046153	PMS2P3	chr7	75144011	-	RPL38	chr17	72205948	+
intron-intron	ENST00000418756	ENST00000534490		ChiTaRS3.1			BC046153	PMS2P3	chr7	75144011	-	RPL38	chr17	72205948	+
intron-intron	ENST00000418756	ENST00000533498		ChiTaRS3.1			BC046153	PMS2P3	chr7	75144011	-	RPL38	chr17	72205948	+
intron-3CDS	ENST00000341653	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000341653	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000341653	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000341653	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000341653	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358402	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358402	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358402	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358402	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000358402	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555932	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555932	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555932	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555932	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000555932	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000284165	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000284165	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000284165	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000284165	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000284165	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358664	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358664	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358664	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000358664	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000358664	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555419	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555419	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555419	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555419	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000555419	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557277	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557277	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557277	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557277	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000557277	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556979	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556979	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556979	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556979	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000556979	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555667	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555667	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555667	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000555667	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000555667	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557746	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557746	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557746	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000557746	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000557746	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556443	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556443	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556443	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000556443	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000556443	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000246163	ENST00000374005		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000246163	ENST00000399173		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000246163	ENST00000545953		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3CDS	ENST00000246163	ENST00000374004		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-intron	ENST00000246163	ENST00000468038		ChiTaRS3.1			BI031363	MAX	chr14	65545992	-	FGR	chr1	27939823	+
intron-3UTR	ENST00000375512	ENST00000375512		ChiTaRS3.1			BU070183	BICD2	chr9	95475166	-	BICD2	chr9	95475234	+
intron-3UTR	ENST00000375512	ENST00000356884		ChiTaRS3.1			BU070183	BICD2	chr9	95475166	-	BICD2	chr9	95475234	+
intron-3UTR	ENST00000356884	ENST00000375512		ChiTaRS3.1			BU070183	BICD2	chr9	95475166	-	BICD2	chr9	95475234	+
intron-3UTR	ENST00000356884	ENST00000356884		ChiTaRS3.1			BU070183	BICD2	chr9	95475166	-	BICD2	chr9	95475234	+
intron-3UTR	ENST00000482597	ENST00000382582		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-3UTR	ENST00000482597	ENST00000355994		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-3UTR	ENST00000482597	ENST00000397875		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-3UTR	ENST00000482597	ENST00000397866		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-3UTR	ENST00000482597	ENST00000397865		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000527041		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000359645		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000528160		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000397869		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000354542		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000526111		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000580402		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000579129		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000578193		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000397863		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000397860		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000482597	ENST00000487778		ChiTaRS3.1			EB387673	PTPRVP	chr1	202157017	+	MBP	chr18	74691240	-
intron-intron	ENST00000269967	ENST00000306156		ChiTaRS3.1			DQ464350	CCDC97	chr19	41818610	-	PRKCE	chr2	46312674	-
intron-intron	ENST00000269967	ENST00000467135		ChiTaRS3.1			DQ464350	CCDC97	chr19	41818610	-	PRKCE	chr2	46312674	-
intron-intron	ENST00000269967	ENST00000394874		ChiTaRS3.1			DQ464350	CCDC97	chr19	41818610	-	PRKCE	chr2	46312674	-
Frame-shit	ENST00000268171	ENST00000268171		ChiTaRS3.1			BF959423	FURIN	chr15	91422716	-	FURIN	chr15	91424197	-
intron-3CDS	ENST00000281038	ENST00000296503		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3CDS	ENST00000281038	ENST00000438704		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3CDS	ENST00000281038	ENST00000446922		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3CDS	ENST00000528850	ENST00000296503		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3CDS	ENST00000528850	ENST00000438704		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3CDS	ENST00000528850	ENST00000446922		ChiTaRS3.1			BQ371623	NARS2	chr11	78147707	-	HMGB2	chr4	174254340	-
intron-3UTR	ENST00000337910	ENST00000379613		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000337910	ENST00000379604		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000337910	ENST00000319516		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000337910	ENST00000379608		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000337910	ENST00000482890		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000337910	ENST00000497266		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000357917	ENST00000379613		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000357917	ENST00000379604		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000357917	ENST00000319516		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000357917	ENST00000379608		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000357917	ENST00000482890		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000357917	ENST00000497266		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000490827	ENST00000379613		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000490827	ENST00000379604		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000490827	ENST00000319516		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-3UTR	ENST00000490827	ENST00000379608		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000490827	ENST00000482890		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
intron-intron	ENST00000490827	ENST00000497266		ChiTaRS3.1			R77613	RHOBTB1	chr10	62633289	-	TFAP2A	chr6	10398214	-
3UTR-3CDS	ENST00000299084	ENST00000174618		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-5UTR	ENST00000299084	ENST00000575374		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
3UTR-3UTR	ENST00000299084	ENST00000575394		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3CDS	ENST00000561205	ENST00000174618		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-5UTR	ENST00000561205	ENST00000575374		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-3UTR	ENST00000561205	ENST00000575394		ChiTaRS3.1			AI968443	SPRED1	chr15	38646176	-	MNT	chr17	2291249	+
intron-intron	ENST00000431532	ENST00000510175		ChiTaRS3.1			AW610263	ZNHIT6	chr1	86119014	+	ZNF718	chr4	86169	+
intron-intron	ENST00000370574	ENST00000510175		ChiTaRS3.1			AW610263	ZNHIT6	chr1	86119014	+	ZNF718	chr4	86169	+
intron-intron	ENST00000281038	ENST00000432306		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
intron-intron	ENST00000281038	ENST00000393077		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
intron-intron	ENST00000281038	ENST00000483122		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
intron-intron	ENST00000528850	ENST00000432306		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
intron-intron	ENST00000528850	ENST00000393077		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
intron-intron	ENST00000528850	ENST00000483122		ChiTaRS3.1			BG924743	NARS2	chr11	78208943	-	VTI1A	chr10	114308110	-
3UTR-3UTR	ENST00000258796	ENST00000258796		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000258796	ENST00000407643		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000258796	ENST00000403167		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-intron	ENST00000258796	ENST00000477439		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000407643	ENST00000258796		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000407643	ENST00000407643		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000407643	ENST00000403167		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-intron	ENST00000407643	ENST00000477439		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000403167	ENST00000258796		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000403167	ENST00000407643		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-3UTR	ENST00000403167	ENST00000403167		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
3UTR-intron	ENST00000403167	ENST00000477439		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
intron-3UTR	ENST00000477439	ENST00000258796		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
intron-3UTR	ENST00000477439	ENST00000407643		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
intron-3UTR	ENST00000477439	ENST00000403167		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
intron-intron	ENST00000477439	ENST00000477439		ChiTaRS3.1			CX756063	TTYH3	chr7	2704026	+	TTYH3	chr7	2703050	+
intron-intron	ENST00000381556	ENST00000375976		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000211379		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000439687		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000404765		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000375964		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000362049		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000470875		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000442479		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000449450		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000417144		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000551350		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000497694		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000422756		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000425649		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000434446		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000552467		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000463220		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000413922		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000454478		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000412012		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000546462		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000460147		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000383446		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000361076		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000383448		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000552605		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000471376		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000415373		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000444402		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000415345		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000550393		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000461852		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000443182		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000451932		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000419847		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000552116		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000381556	ENST00000460429		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000375976		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000211379		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000439687		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000404765		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000375964		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000362049		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000470875		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000442479		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000449450		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000417144		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000551350		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000497694		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000422756		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000425649		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000434446		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000552467		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000463220		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000413922		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000454478		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000412012		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000546462		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000460147		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000383446		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000361076		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000383448		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000552605		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000471376		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000415373		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000444402		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000415345		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000550393		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000461852		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000443182		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000451932		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000419847		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000552116		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
intron-intron	ENST00000254718	ENST00000460429		ChiTaRS3.1			BF923713	MYBBP1A	chr17	4451891	-	BAG6	chr6	3125006	-
5UTR-3CDS	ENST00000248594	ENST00000529230		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000415402		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000312055		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-3CDS	ENST00000248594	ENST00000354558		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
5UTR-intron	ENST00000248594	ENST00000532321		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000529230		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000415402		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000312055		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000415482	ENST00000354558		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000415482	ENST00000532321		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000529230		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000415402		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000312055		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-3CDS	ENST00000435495	ENST00000354558		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000435495	ENST00000532321		ChiTaRS3.1			AI341063	PTPN12	chr7	77166725	-	CKAP5	chr11	46765654	+
intron-intron	ENST00000375217	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375217	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375217	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375217	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375217	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375217	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375226	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375226	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375226	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375226	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375226	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375226	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375267	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375267	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375267	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375267	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375267	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375267	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375254	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375254	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375254	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375254	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375254	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375254	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375225	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375225	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375225	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375225	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375225	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375225	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000429347	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000429347	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000429347	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000429347	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000429347	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000429347	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375224	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375224	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375224	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375224	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375224	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375224	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000543981	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000543981	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000543981	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000543981	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000543981	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000543981	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000467272	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000467272	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000467272	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000467272	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000467272	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000467272	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375218	ENST00000199940		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375218	ENST00000360351		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375218	ENST00000361559		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-3UTR	ENST00000375218	ENST00000392194		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375218	ENST00000447185		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000375218	ENST00000475600		ChiTaRS3.1			T05233	UBR4	chr1	19401050	+	MAP2	chr2	210598228	+
intron-intron	ENST00000536230	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000536230	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-3UTR	ENST00000536230	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000536230	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000536230	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000536230	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000392282	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000392282	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-3UTR	ENST00000392282	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000392282	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000392282	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000392282	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000538427	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000538427	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-3UTR	ENST00000538427	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000538427	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000538427	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000538427	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000367456	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000367456	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-3UTR	ENST00000367456	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000367456	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000367456	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000367456	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000461481	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000461481	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-3UTR	ENST00000461481	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000461481	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000461481	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-intron	ENST00000461481	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000286332	ENST00000362026		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000286332	ENST00000339611		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-3UTR	ENST00000286332	ENST00000394785		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000286332	ENST00000503103		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000286332	ENST00000503230		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
3UTR-intron	ENST00000286332	ENST00000505838		ChiTaRS3.1			BF814363	TAB2	chr6	149732229	-	SLC9B2	chr4	103946729	+
intron-3CDS	ENST00000284984	ENST00000284984		ChiTaRS3.1			N27243	ADAMTS1	chr21	28209271	-	ADAMTS1	chr21	28213385	-
intron-intron	ENST00000585832	ENST00000284548		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000570156		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000366709		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000422127		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000366707		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000359599		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000585832	ENST00000602685		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000284548		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000570156		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000366709		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000422127		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000366707		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000359599		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-intron	ENST00000600215	ENST00000602685		ChiTaRS3.1			BP228603	CIRBP-AS1	chr19	1271418	+	OBSCN	chr1	228493832	+
intron-5UTR	ENST00000346916	ENST00000324306		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000346916	ENST00000426572		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000346916	ENST00000535170		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000545507	ENST00000324306		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000545507	ENST00000426572		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000545507	ENST00000535170		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000333511	ENST00000324306		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000333511	ENST00000426572		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000333511	ENST00000535170		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000353555	ENST00000324306		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000353555	ENST00000426572		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000353555	ENST00000535170		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000574970	ENST00000324306		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000574970	ENST00000426572		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-5UTR	ENST00000574970	ENST00000535170		ChiTaRS3.1			BF819563	BSG	chr19	579499	-	ZKSCAN1	chr7	99613281	+
intron-3CDS	ENST00000545802	ENST00000341846		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000545802	ENST00000524816		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000545802	ENST00000541857		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000545802	ENST00000525887		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000545802	ENST00000528870		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000545802	ENST00000529044		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000546076	ENST00000341846		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000546076	ENST00000524816		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000546076	ENST00000541857		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000546076	ENST00000525887		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000546076	ENST00000528870		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000546076	ENST00000529044		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000544427	ENST00000341846		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000544427	ENST00000524816		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000544427	ENST00000541857		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000544427	ENST00000525887		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000544427	ENST00000528870		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000544427	ENST00000529044		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000535215	ENST00000341846		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000535215	ENST00000524816		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000535215	ENST00000541857		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000535215	ENST00000525887		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000535215	ENST00000528870		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000535215	ENST00000529044		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000261177	ENST00000341846		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000261177	ENST00000524816		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-3CDS	ENST00000261177	ENST00000541857		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000261177	ENST00000525887		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000261177	ENST00000528870		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-5UTR	ENST00000261177	ENST00000529044		ChiTaRS3.1			BG992093	TSPAN11	chr12	31126279	-	TRIM29	chr11	119991316	-
intron-intron	ENST00000339656	ENST00000367584		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000339656	ENST00000427704		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000339656	ENST00000305766		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000339656	ENST00000440869		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000339656	ENST00000367582		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000339656	ENST00000397980		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000367584		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000427704		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000305766		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000440869		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000367582		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000423137	ENST00000397980		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000367584		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000427704		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000305766		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000440869		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000367582		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000419854	ENST00000397980		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000367584		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000427704		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000305766		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000440869		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000367582		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
intron-intron	ENST00000596433	ENST00000397980		ChiTaRS3.1			BF990913	ZNF587	chr19	58341420	-	PHACTR2	chr6	144104613	-
3UTR-3UTR	ENST00000394054	ENST00000394054		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-intron	ENST00000394054	ENST00000326151		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-3UTR	ENST00000394054	ENST00000326172		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-3UTR	ENST00000326151	ENST00000394054		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-intron	ENST00000326151	ENST00000326151		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-3UTR	ENST00000326151	ENST00000326172		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-3UTR	ENST00000326172	ENST00000394054		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-intron	ENST00000326172	ENST00000326151		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
3UTR-3UTR	ENST00000326172	ENST00000326172		ChiTaRS3.1			DB319773	NFKBIZ	chr3	101578305	-	NFKBIZ	chr3	101579470	-
intron-intron	ENST00000381980	ENST00000381980		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000381980	ENST00000508175		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000381980	ENST00000284437		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000508175	ENST00000381980		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000508175	ENST00000508175		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000508175	ENST00000284437		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000284437	ENST00000381980		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000284437	ENST00000508175		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-intron	ENST00000284437	ENST00000284437		ChiTaRS3.1			CA450533	C4orf19	chr4	37594571	-	C4orf19	chr4	37594260	+
intron-3UTR	ENST00000520358	ENST00000520358		ChiTaRS3.1			BF737123	TSPAN18	chr11	44953264	+	TSPAN18	chr11	44952272	+
intron-3UTR	ENST00000520358	ENST00000340160		ChiTaRS3.1			BF737123	TSPAN18	chr11	44953264	+	TSPAN18	chr11	44952272	+
3UTR-3UTR	ENST00000340160	ENST00000520358		ChiTaRS3.1			BF737123	TSPAN18	chr11	44953264	+	TSPAN18	chr11	44952272	+
3UTR-3UTR	ENST00000340160	ENST00000340160		ChiTaRS3.1			BF737123	TSPAN18	chr11	44953264	+	TSPAN18	chr11	44952272	+
intron-3UTR	ENST00000427522	ENST00000427522		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000427522	ENST00000467148		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000427522	ENST00000479540		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-3UTR	ENST00000467148	ENST00000427522		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000467148	ENST00000467148		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000467148	ENST00000479540		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-3UTR	ENST00000479540	ENST00000427522		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000479540	ENST00000467148		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000479540	ENST00000479540		ChiTaRS3.1			BE731343	HELZ2	chr20	62190575	+	HELZ2	chr20	62190494	-
intron-intron	ENST00000375486	ENST00000261811		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000375486	ENST00000509789		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000444885	ENST00000261811		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000444885	ENST00000509789		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000375481	ENST00000261811		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000375481	ENST00000509789		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000466151	ENST00000261811		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-intron	ENST00000466151	ENST00000509789		ChiTaRS3.1			BI023223	PADI2	chr1	17393413	-	CYSTM1	chr5	139658449	-
intron-3UTR	ENST00000233813	ENST00000233813		ChiTaRS3.1			CO245513	IGFBP5	chr2	217537657	-	IGFBP5	chr2	217538424	-
intron-intron	ENST00000482918	ENST00000310823		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000482918	ENST00000497134		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000497473	ENST00000310823		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000497473	ENST00000497134		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
3UTR-intron	ENST00000470914	ENST00000310823		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
3UTR-intron	ENST00000470914	ENST00000497134		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000545602	ENST00000310823		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000545602	ENST00000497134		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000489468	ENST00000310823		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-intron	ENST00000489468	ENST00000497134		ChiTaRS3.1			BF333103	IAH1	chr2	9629677	+	ADAM17	chr2	9673975	-
intron-3CDS	ENST00000311160	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000311160	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000311160	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000311160	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3CDS	ENST00000355730	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000355730	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000355730	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000355730	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3CDS	ENST00000398879	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000398879	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000398879	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000398879	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3CDS	ENST00000442536	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000442536	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000442536	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000442536	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3CDS	ENST00000458317	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000458317	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000458317	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000458317	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3CDS	ENST00000474346	ENST00000380445		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000474346	ENST00000380469		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000474346	ENST00000481812		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-3UTR	ENST00000474346	ENST00000380443		ChiTaRS3.1			BI061793	TNS3	chr7	47435257	+	VPS16	chr20	2843526	+
intron-intron	ENST00000413366	ENST00000392825		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-intron	ENST00000413366	ENST00000409237		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-intron	ENST00000413366	ENST00000487047		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-intron	ENST00000583361	ENST00000392825		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-intron	ENST00000583361	ENST00000409237		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-intron	ENST00000583361	ENST00000487047		ChiTaRS3.1			BF665493	PRKCA	chr17	64511798	+	GALNT13	chr2	154989308	-
intron-3CDS	ENST00000399916	ENST00000399916		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000308873		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000338888		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000399916	ENST00000540420		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000399916	ENST00000496967		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000399916		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000308873		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000338888		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000308873	ENST00000540420		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000308873	ENST00000496967		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000399916		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000308873		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000338888		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000338888	ENST00000540420		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000338888	ENST00000496967		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000399916		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000308873		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000338888		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000540420	ENST00000540420		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000540420	ENST00000496967		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000399916		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000308873		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000338888		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-3CDS	ENST00000496967	ENST00000540420		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000496967	ENST00000496967		ChiTaRS3.1			BU431653	RUNX3	chr1	25228960	-	RUNX3	chr1	25228816	+
intron-intron	ENST00000605917	ENST00000596521		ChiTaRS3.1			BQ935943	CASC15	chr6	21986862	-	PTOV1-AS1	chr19	50354522	+
intron-intron	ENST00000605917	ENST00000600742		ChiTaRS3.1			BQ935943	CASC15	chr6	21986862	-	PTOV1-AS1	chr19	50354522	+
intron-intron	ENST00000374001	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000374001	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373993	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373995	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000373997	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395495	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000282641	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000395489	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000491145		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000395720		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000357698		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000380230		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000496660		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000319580		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-intron	ENST00000493415	ENST00000395723		ChiTaRS3.1			BC022263	A1CF	chr10	52595988	-	ANKDD1A	chr15	65245499	-
intron-3CDS	ENST00000352385	ENST00000298694		ChiTaRS3.1			CN359993	IGDCC4	chr15	65675866	+	ARHGEF40	chr14	21541231	+
intron-3CDS	ENST00000352385	ENST00000298693		ChiTaRS3.1			CN359993	IGDCC4	chr15	65675866	+	ARHGEF40	chr14	21541231	+
intron-3CDS	ENST00000558048	ENST00000298694		ChiTaRS3.1			CN359993	IGDCC4	chr15	65675866	+	ARHGEF40	chr14	21541231	+
intron-3CDS	ENST00000558048	ENST00000298693		ChiTaRS3.1			CN359993	IGDCC4	chr15	65675866	+	ARHGEF40	chr14	21541231	+
intron-intron	ENST00000250559	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000250559	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000250559	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000393436	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000393436	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000393436	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000341355	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000341355	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000341355	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000537460	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000537460	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000537460	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000463493	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000463493	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000463493	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000450214	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000450214	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000450214	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543393	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543393	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543393	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000378985	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000378985	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000378985	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000540209	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000540209	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000540209	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000539091	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000539091	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000539091	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000542145	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000542145	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000542145	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543697	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543697	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000543697	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000541216	ENST00000261965		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000541216	ENST00000375669		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000541216	ENST00000462580		ChiTaRS3.1			BF327763	RAP1B	chr12	69032201	+	TUBGCP3	chr13	113193332	+
intron-intron	ENST00000316218	ENST00000316218		ChiTaRS3.1			AI033823	PDIA5	chr3	122854775	+	PDIA5	chr3	122850280	+
intron-intron	ENST00000316218	ENST00000467157		ChiTaRS3.1			AI033823	PDIA5	chr3	122854775	+	PDIA5	chr3	122850280	+
intron-intron	ENST00000467157	ENST00000316218		ChiTaRS3.1			AI033823	PDIA5	chr3	122854775	+	PDIA5	chr3	122850280	+
intron-intron	ENST00000467157	ENST00000467157		ChiTaRS3.1			AI033823	PDIA5	chr3	122854775	+	PDIA5	chr3	122850280	+
In-frame	ENST00000392209	ENST00000345146		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000392209	ENST00000446179		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000392209	ENST00000415913		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000420822	ENST00000345146		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000420822	ENST00000446179		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000420822	ENST00000415913		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000295414	ENST00000345146		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000295414	ENST00000446179		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000295414	ENST00000415913		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000339882	ENST00000345146		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000339882	ENST00000446179		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
In-frame	ENST00000339882	ENST00000415913		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
intron-3CDS	ENST00000468768	ENST00000345146		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
intron-3CDS	ENST00000468768	ENST00000446179		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
intron-3CDS	ENST00000468768	ENST00000415913		ChiTaRS3.1			BC065703	CCNYL1	chr2	208576841	+	IDH1	chr2	209104729	-
5CDS-3UTR	ENST00000371817	ENST00000371817		ChiTaRS3.1			BG995263	COL5A1	chr9	137620605	-	COL5A1	chr9	137734195	-
5CDS-intron	ENST00000371817	ENST00000464187		ChiTaRS3.1			BG995263	COL5A1	chr9	137620605	-	COL5A1	chr9	137734195	-
intron-3UTR	ENST00000464187	ENST00000371817		ChiTaRS3.1			BG995263	COL5A1	chr9	137620605	-	COL5A1	chr9	137734195	-
intron-intron	ENST00000464187	ENST00000464187		ChiTaRS3.1			BG995263	COL5A1	chr9	137620605	-	COL5A1	chr9	137734195	-
intron-3CDS	ENST00000343455	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000343455	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000343455	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000343455	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000343455	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000343455	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000526495	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000526495	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000526495	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000526495	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000526495	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000526495	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000393063	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000393063	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000393063	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000393063	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000393063	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000393063	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527416	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527416	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527416	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527416	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527416	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000527416	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527414	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527414	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527414	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527414	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000527414	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000527414	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000556045	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000556045	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000556045	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000556045	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000556045	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000556045	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000541352	ENST00000310351		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000541352	ENST00000488653		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000541352	ENST00000485727		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000541352	ENST00000489746		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-3CDS	ENST00000541352	ENST00000433542		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000541352	ENST00000483247		ChiTaRS3.1			BE836683	DICER1	chr14	95569908	+	CCDC14	chr3	123634212	+
intron-intron	ENST00000369701	ENST00000311457		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-intron	ENST00000369701	ENST00000559919		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-intron	ENST00000369701	ENST00000559939		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-intron	ENST00000369699	ENST00000311457		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-intron	ENST00000369699	ENST00000559919		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-intron	ENST00000369699	ENST00000559939		ChiTaRS3.1			T07523	SORCS3	chr10	106961058	+	REC8	chr14	24649463	-
intron-3CDS	ENST00000025008	ENST00000394023		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000025008	ENST00000550164		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000025008	ENST00000347471		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000025008	ENST00000267064		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-5UTR	ENST00000025008	ENST00000550859		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000435644	ENST00000394023		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000435644	ENST00000550164		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000435644	ENST00000347471		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000435644	ENST00000267064		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-5UTR	ENST00000435644	ENST00000550859		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000521611	ENST00000394023		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000521611	ENST00000550164		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000521611	ENST00000347471		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000521611	ENST00000267064		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-5UTR	ENST00000521611	ENST00000550859		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000539297	ENST00000394023		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000539297	ENST00000550164		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000539297	ENST00000347471		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-3CDS	ENST00000539297	ENST00000267064		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-5UTR	ENST00000539297	ENST00000550859		ChiTaRS3.1			BF817683	RB1CC1	chr8	53620237	-	SMARCC2	chr12	56578032	-
intron-5UTR	ENST00000389362	ENST00000406697		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000389362	ENST00000328916		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000389362	ENST00000360817		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000389362	ENST00000402681		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-intron	ENST00000389362	ENST00000495061		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000545829	ENST00000406697		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000545829	ENST00000328916		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000545829	ENST00000360817		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-5UTR	ENST00000545829	ENST00000402681		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-intron	ENST00000545829	ENST00000495061		ChiTaRS3.1			CR749503	PRB2	chr12	11546526	-	C1S	chr12	7169162	+
intron-intron	ENST00000448637	ENST00000448637		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-3UTR	ENST00000448637	ENST00000312675		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-3UTR	ENST00000448637	ENST00000543006		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-intron	ENST00000448637	ENST00000471917		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-intron	ENST00000312675	ENST00000448637		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-3UTR	ENST00000312675	ENST00000312675		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-3UTR	ENST00000312675	ENST00000543006		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-intron	ENST00000312675	ENST00000471917		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-intron	ENST00000543006	ENST00000448637		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-3UTR	ENST00000543006	ENST00000312675		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-3UTR	ENST00000543006	ENST00000543006		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
3UTR-intron	ENST00000543006	ENST00000471917		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-intron	ENST00000471917	ENST00000448637		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-3UTR	ENST00000471917	ENST00000312675		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-3UTR	ENST00000471917	ENST00000543006		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-intron	ENST00000471917	ENST00000471917		ChiTaRS3.1			AA747103	LPP	chr3	188596444	+	LPP	chr3	188596524	-
intron-3UTR	ENST00000421952	ENST00000564088		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000382450		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000569417		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-intron	ENST00000421952	ENST00000561651		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000301724		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000397124		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000565250		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
intron-3UTR	ENST00000421952	ENST00000301725		ChiTaRS3.1			BF964073	DDN	chr12	49390675	-	MLST8	chr16	2258894	-
3UTR-3UTR	ENST00000335350	ENST00000335350		ChiTaRS3.1			BG403733	UNC5B	chr10	73060876	+	UNC5B	chr10	73060071	+
3UTR-3UTR	ENST00000335350	ENST00000373192		ChiTaRS3.1			BG403733	UNC5B	chr10	73060876	+	UNC5B	chr10	73060071	+
3UTR-3UTR	ENST00000373192	ENST00000335350		ChiTaRS3.1			BG403733	UNC5B	chr10	73060876	+	UNC5B	chr10	73060071	+
3UTR-3UTR	ENST00000373192	ENST00000373192		ChiTaRS3.1			BG403733	UNC5B	chr10	73060876	+	UNC5B	chr10	73060071	+
Frame-shit	ENST00000392784	ENST00000392784		ChiTaRS3.1			BG012483	USP30	chr12	109519198	+	USP30	chr12	109505328	+
Frame-shit	ENST00000392784	ENST00000257548		ChiTaRS3.1			BG012483	USP30	chr12	109519198	+	USP30	chr12	109505328	+
Frame-shit	ENST00000257548	ENST00000392784		ChiTaRS3.1			BG012483	USP30	chr12	109519198	+	USP30	chr12	109505328	+
Frame-shit	ENST00000257548	ENST00000257548		ChiTaRS3.1			BG012483	USP30	chr12	109519198	+	USP30	chr12	109505328	+
In-frame	ENST00000367584	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367584	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000427704	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000305766	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000440869	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
In-frame	ENST00000367582	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000367584		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000427704		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000305766		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000440869		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000367582		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
intron-3CDS	ENST00000397980	ENST00000397980		ChiTaRS3.1			CA430013	PHACTR2	chr6	144093587	-	PHACTR2	chr6	144033291	+
3UTR-intron	ENST00000318443	ENST00000481781		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
3UTR-5UTR	ENST00000318443	ENST00000397270		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-intron	ENST00000537340	ENST00000481781		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-5UTR	ENST00000537340	ENST00000397270		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
3UTR-intron	ENST00000318424	ENST00000481781		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
3UTR-5UTR	ENST00000318424	ENST00000397270		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-intron	ENST00000561213	ENST00000481781		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-5UTR	ENST00000561213	ENST00000397270		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-intron	ENST00000564751	ENST00000481781		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-5UTR	ENST00000564751	ENST00000397270		ChiTaRS3.1			BQ549143	CD276	chr15	74006415	-	INS-IGF2	chr11	2182221	-
intron-3CDS	ENST00000519716	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000519716	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000252773	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000428389	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000551649	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000552293	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000519716		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000252773		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000428389		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000551649		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000552293		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3CDS	ENST00000550896	ENST00000550896		ChiTaRS3.1			BE767133	UNC13A	chr19	17729750	+	UNC13A	chr19	17720905	-
intron-3UTR	ENST00000450943	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000450943	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000450943	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-5UTR	ENST00000450943	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000450943	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000450943	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000354888	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000354888	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000354888	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-5UTR	ENST00000354888	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000354888	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000354888	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393108	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393108	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393108	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-5UTR	ENST00000393108	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393108	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393108	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393110	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393110	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393110	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-5UTR	ENST00000393110	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393110	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393110	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393106	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393106	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393106	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-5UTR	ENST00000393106	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393106	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000393106	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000393107	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000393107	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000393107	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-5UTR	ENST00000393107	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000393107	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000393107	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000409811	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000409811	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000409811	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-5UTR	ENST00000409811	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000409811	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-3UTR	ENST00000409811	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000425223	ENST00000296444		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000425223	ENST00000444115		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000425223	ENST00000426002		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-5UTR	ENST00000425223	ENST00000465449		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000425223	ENST00000442747		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
3UTR-3UTR	ENST00000425223	ENST00000443308		ChiTaRS3.1			BQ920013	STEAP3	chr2	120022845	-	SHISA5	chr3	48510135	-
intron-intron	ENST00000357103	ENST00000528190		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000393389		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000528722		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000260047		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000526731		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000531895		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000393392		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000357103	ENST00000533342		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000528190		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000393389		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000528722		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000260047		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000526731		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000531895		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000393392		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
intron-intron	ENST00000544470	ENST00000533342		ChiTaRS3.1			BM461953	ADIPOR2	chr12	1847883	+	ANKRD42	chr11	82965716	+
5CDS-3UTR	ENST00000357849	ENST00000469172		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000265866		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000441000		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000357849	ENST00000354695		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000469172		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000265866		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000441000		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
5CDS-3UTR	ENST00000517736	ENST00000354695		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000469172		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000265866		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000441000		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-3UTR	ENST00000519963	ENST00000354695		ChiTaRS3.1			BE176803	COPS5	chr8	67970316	-	HNRNPH3	chr10	70101750	+
intron-intron	ENST00000295522	ENST00000545260		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000545693		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000350537		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000346874		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374789		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374790		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374794		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374788		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000466092		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374776		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000340077		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000544292		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374773		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000295522	ENST00000374768		ChiTaRS3.1			BU753063	CLDN1	chr3	190025563	+	PARD3	chr10	35084174	+
intron-intron	ENST00000559066	ENST00000346128		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000559066	ENST00000400011		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000559066	ENST00000356107		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000559066	ENST00000545208		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000559066	ENST00000495972		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000263798	ENST00000346128		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000263798	ENST00000400011		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000263798	ENST00000356107		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000263798	ENST00000545208		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
intron-intron	ENST00000263798	ENST00000495972		ChiTaRS3.1			BE843213	TYRO3	chr15	41866613	+	TJP1	chr15	30093030	-
5CDS-intron	ENST00000255641	ENST00000604938		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000401010		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000339388		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000369323		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000605317		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000479926		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000604894		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
5CDS-intron	ENST00000255641	ENST00000401009		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000604938		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000401010		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000339388		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000369323		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000605317		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000479926		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000604894		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-intron	ENST00000587123	ENST00000401009		ChiTaRS3.1			BQ331903	CSNK1G2	chr19	1969813	+	NBPF11	chr1	147778145	-
intron-3CDS	ENST00000332981	ENST00000372692		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000332981	ENST00000409104		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000332981	ENST00000322030		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000332981	ENST00000372688		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3UTR	ENST00000332981	ENST00000477806		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000555082	ENST00000372692		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000555082	ENST00000409104		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000555082	ENST00000322030		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000555082	ENST00000372688		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3UTR	ENST00000555082	ENST00000477806		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000556245	ENST00000372692		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000556245	ENST00000409104		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000556245	ENST00000322030		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3CDS	ENST00000556245	ENST00000372688		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-3UTR	ENST00000556245	ENST00000477806		ChiTaRS3.1			BQ378983	PRKCH	chr14	61831027	-	SET	chr9	131456207	-
intron-5UTR	ENST00000472824	ENST00000472824		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000472824	ENST00000313146		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000472824	ENST00000368219		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-5UTR	ENST00000313146	ENST00000472824		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000313146	ENST00000313146		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000313146	ENST00000368219		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-5UTR	ENST00000368219	ENST00000472824		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000368219	ENST00000313146		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000368219	ENST00000368219		ChiTaRS3.1			AW848803	ISG20L2	chr1	156697050	+	ISG20L2	chr1	156692911	+
intron-3UTR	ENST00000511685	ENST00000343933		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-3UTR	ENST00000511685	ENST00000375077		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-3UTR	ENST00000406950	ENST00000343933		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-3UTR	ENST00000406950	ENST00000375077		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-3UTR	ENST00000502950	ENST00000343933		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-3UTR	ENST00000502950	ENST00000375077		ChiTaRS3.1			BU624193	TENM3	chr4	183272031	-	CORO2A	chr9	100886943	+
intron-intron	ENST00000379300	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379300	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379300	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379300	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379300	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379300	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000356436	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000379307	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000343141	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607658	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000379300		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000356436		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000379307		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000343141		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000607658		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-intron	ENST00000607532	ENST00000607532		ChiTaRS3.1			AA814753	TBC1D7	chr6	13327757	+	TBC1D7	chr6	13328324	-
intron-3UTR	ENST00000460734	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000460734	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000460734	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000539173	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000539173	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000539173	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000437626	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000437626	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000437626	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000389863	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000389863	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000389863	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000348831	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000348831	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000348831	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000360697	ENST00000394054		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-intron	ENST00000360697	ENST00000326151		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3UTR	ENST00000360697	ENST00000326172		ChiTaRS3.1			AW630143	ADARB1	chr21	46548887	+	NFKBIZ	chr3	101579269	+
intron-3CDS	ENST00000390237	ENST00000375664		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
intron-intron	ENST00000390237	ENST00000375646		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
intron-intron	ENST00000390237	ENST00000347934		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
intron-intron	ENST00000390237	ENST00000354911		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
intron-intron	ENST00000390237	ENST00000428935		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
intron-intron	ENST00000390237	ENST00000532233		ChiTaRS3.1			BE818093	IGKC	chr2	89156832	+	WAC	chr10	28884830	-
3UTR-3UTR	ENST00000517503	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000517503	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000517503	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000292494	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000292494	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000429120	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000429120	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521699	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521699	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000520531	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000520531	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000520466	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000520466	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000521003	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000521003	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522528	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522528	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000522971	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000522971	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519611	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519611	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000521182	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000521182	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-3UTR	ENST00000519546	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000519546	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000523847	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000523847	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000522024	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000522024	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000517503		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000292494		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000429120		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000521699		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000520531		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000520466		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000521003		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000522528		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000522971		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000519611		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000521182		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-3UTR	ENST00000519615	ENST00000519546		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000523847		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000522024		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
intron-intron	ENST00000519615	ENST00000519615		ChiTaRS3.1			N95373	LY6E	chr8	144103562	-	LY6E	chr8	144103341	+
3UTR-intron	ENST00000318008	ENST00000541925		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000318008	ENST00000542156		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000318008	ENST00000370390		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000318008	ENST00000451863		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-3UTR	ENST00000318008	ENST00000544228		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-3UTR	ENST00000318008	ENST00000445323		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000318008	ENST00000538506		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-intron	ENST00000433206	ENST00000541925		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-intron	ENST00000433206	ENST00000542156		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-intron	ENST00000433206	ENST00000370390		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-intron	ENST00000433206	ENST00000451863		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-3UTR	ENST00000433206	ENST00000544228		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-3UTR	ENST00000433206	ENST00000445323		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-intron	ENST00000433206	ENST00000538506		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000435347	ENST00000541925		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000435347	ENST00000542156		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000435347	ENST00000370390		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000435347	ENST00000451863		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-3UTR	ENST00000435347	ENST00000544228		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-3UTR	ENST00000435347	ENST00000445323		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
3UTR-intron	ENST00000435347	ENST00000538506		ChiTaRS3.1			DB343893	LASP1	chr17	37077904	-	MTMR1	chrX	149931802	-
intron-3UTR	ENST00000548241	ENST00000287641		ChiTaRS3.1			AK126893	ANKRD52	chr12	56636333	-	SST	chr3	187386808	-
intron-3UTR	ENST00000267116	ENST00000287641		ChiTaRS3.1			AK126893	ANKRD52	chr12	56636333	-	SST	chr3	187386808	-
intron-3CDS	ENST00000309311	ENST00000309311		ChiTaRS3.1			BF761203	EEF2	chr19	3976742	+	EEF2	chr19	3980695	-
intron-intron	ENST00000309311	ENST00000600720		ChiTaRS3.1			BF761203	EEF2	chr19	3976742	+	EEF2	chr19	3980695	-
intron-3CDS	ENST00000600720	ENST00000309311		ChiTaRS3.1			BF761203	EEF2	chr19	3976742	+	EEF2	chr19	3980695	-
intron-intron	ENST00000600720	ENST00000600720		ChiTaRS3.1			BF761203	EEF2	chr19	3976742	+	EEF2	chr19	3980695	-
intron-intron	ENST00000259698	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000259698	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000538035	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000510784	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000378023	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000540914	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000300737		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000527651		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000527484		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-intron	ENST00000473070	ENST00000533977		ChiTaRS3.1			BF905363	FAM65B	chr6	24840468	-	STIM1	chr11	3890478	+
intron-3CDS	ENST00000217131	ENST00000217131		ChiTaRS3.1			BF902823	CTSZ	chr20	57570448	+	CTSZ	chr20	57570715	-
intron-intron	ENST00000511438	ENST00000511438		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000511438	ENST00000265068		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000511438	ENST00000510149		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000511438	ENST00000515659		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000265068	ENST00000511438		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000265068	ENST00000265068		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000265068	ENST00000510149		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000265068	ENST00000515659		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000510149	ENST00000511438		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000510149	ENST00000265068		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000510149	ENST00000510149		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000510149	ENST00000515659		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000515659	ENST00000511438		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000515659	ENST00000265068		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000515659	ENST00000510149		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000515659	ENST00000515659		ChiTaRS3.1			CN479033	KIAA1257	chr3	128635547	-	KIAA1257	chr3	128635195	+
intron-intron	ENST00000338432	ENST00000338432		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000338432	ENST00000377854		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000338432	ENST00000377848		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000338432	ENST00000543080		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000338432	ENST00000543201		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377854	ENST00000338432		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377854	ENST00000377854		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377854	ENST00000377848		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377854	ENST00000543080		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377854	ENST00000543201		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377848	ENST00000338432		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377848	ENST00000377854		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377848	ENST00000377848		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377848	ENST00000543080		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000377848	ENST00000543201		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543080	ENST00000338432		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543080	ENST00000377854		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543080	ENST00000377848		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543080	ENST00000543080		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543080	ENST00000543201		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543201	ENST00000338432		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543201	ENST00000377854		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543201	ENST00000377848		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543201	ENST00000543080		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-intron	ENST00000543201	ENST00000543201		ChiTaRS3.1			BF822123	ACACB	chr12	109626653	+	ACACB	chr12	109627157	-
intron-3UTR	ENST00000537403	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000537403	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000537403	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000537403	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000537403	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000537403	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000537403	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000537403	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000307712	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000307712	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000307712	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000307712	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000307712	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000307712	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000307712	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000307712	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000536508	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000536508	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000536508	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000536508	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000536508	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000536508	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000536508	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000536508	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000545328	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000545328	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000545328	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000545328	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000545328	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000545328	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000545328	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000545328	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553925	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553925	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553925	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553925	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553925	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553925	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553925	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553925	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000548032	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000548032	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000548032	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000548032	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000548032	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000548032	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000548032	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000548032	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000557280	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000557280	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000557280	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000557280	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000557280	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000557280	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000557280	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000557280	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553970	ENST00000537403		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553970	ENST00000307712		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3UTR	ENST00000553970	ENST00000536508		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553970	ENST00000545328		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553970	ENST00000553925		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553970	ENST00000548032		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553970	ENST00000557280		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-intron	ENST00000553970	ENST00000553970		ChiTaRS3.1			D82153	SEC23A	chr14	39502269	-	SEC23A	chr14	39501988	+
intron-3CDS	ENST00000371754	ENST00000367806		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000371754	ENST00000367805		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000371754	ENST00000545005		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-5UTR	ENST00000371754	ENST00000491570		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000469991	ENST00000367806		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000469991	ENST00000367805		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000469991	ENST00000545005		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-5UTR	ENST00000469991	ENST00000491570		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000371752	ENST00000367806		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000371752	ENST00000367805		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000371752	ENST00000545005		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-5UTR	ENST00000371752	ENST00000491570		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000396105	ENST00000367806		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000396105	ENST00000367805		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-3CDS	ENST00000396105	ENST00000545005		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-5UTR	ENST00000396105	ENST00000491570		ChiTaRS3.1			BE837753	ZNFX1	chr20	47872464	+	CCDC181	chr1	169394069	+
intron-intron	ENST00000563679	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000563679	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000563679	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000563679	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000325823	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000325823	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000325823	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000325823	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000447912	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000447912	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000447912	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000447912	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000535621	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000535621	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000535621	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000535621	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000455313	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000455313	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000455313	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000455313	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000396410	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000396410	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000396410	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000396410	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000569715	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000569715	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000569715	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
3UTR-intron	ENST00000569715	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000450288	ENST00000369799		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000450288	ENST00000475081		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000450288	ENST00000359172		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-intron	ENST00000450288	ENST00000393614		ChiTaRS3.1			DA382933	PDXDC1	chr16	15130799	+	AHCYL1	chr1	110561585	+
intron-3UTR	ENST00000370557	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000327569	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000361648	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000460773	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000370543	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
intron-3UTR	ENST00000359686	ENST00000534336		ChiTaRS3.1			BG616623	ATP11C	chrX	138845650	-	MALAT1	chr11	65266516	+
3UTR-intron	ENST00000248706	ENST00000314499		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000248706	ENST00000464503		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000248706	ENST00000342316		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000248706	ENST00000409420		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000505041	ENST00000314499		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000505041	ENST00000464503		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000505041	ENST00000342316		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
3UTR-intron	ENST00000505041	ENST00000409420		ChiTaRS3.1			T20253	RASL11B	chr4	53732076	+	CSRNP3	chr2	166377694	+
intron-intron	ENST00000323541	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000323541	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000323541	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000454838	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000454838	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000454838	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000449825	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000449825	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000449825	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000323578	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000323578	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000323578	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000429789	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000429789	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000429789	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000336845	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000336845	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000336845	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000528581	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000528581	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000528581	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000436108	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000436108	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000436108	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000526714	ENST00000472193		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000526714	ENST00000428675		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-intron	ENST00000526714	ENST00000437704		ChiTaRS3.1			DN990483	CHID1	chr11	874598	+	PLCL1	chr2	198948479	+
intron-3CDS	ENST00000398148	ENST00000242728		ChiTaRS3.1			M64437	KHSRP	chr19	6424776	+	BHLHE41	chr12	26275216	+
intron-3CDS	ENST00000280326	ENST00000280326		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000280326	ENST00000503026		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000280326	ENST00000515390		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000280326	ENST00000515676		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000280326	ENST00000506600		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000503026	ENST00000280326		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000503026	ENST00000503026		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000503026	ENST00000515390		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000503026	ENST00000515676		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000503026	ENST00000506600		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515390	ENST00000280326		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515390	ENST00000503026		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515390	ENST00000515390		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515390	ENST00000515676		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515390	ENST00000506600		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515676	ENST00000280326		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515676	ENST00000503026		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515676	ENST00000515390		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515676	ENST00000515676		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000515676	ENST00000506600		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000506600	ENST00000280326		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000506600	ENST00000503026		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000506600	ENST00000515390		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000506600	ENST00000515676		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000506600	ENST00000506600		ChiTaRS3.1			BE078213	CCT5	chr5	10256066	-	CCT5	chr5	10258550	+
intron-3CDS	ENST00000356929	ENST00000393386		ChiTaRS3.1			BE765133	ZNF708	chr19	21506506	+	PTPRZ1	chr7	121652002	+
intron-intron	ENST00000356929	ENST00000449182		ChiTaRS3.1			BE765133	ZNF708	chr19	21506506	+	PTPRZ1	chr7	121652002	+
intron-intron	ENST00000356929	ENST00000483028		ChiTaRS3.1			BE765133	ZNF708	chr19	21506506	+	PTPRZ1	chr7	121652002	+
intron-intron	ENST00000268638	ENST00000372014		ChiTaRS3.1			CA392423	IRF8	chr16	85940745	+	MRPL14	chr6	44086998	-
intron-intron	ENST00000563180	ENST00000372014		ChiTaRS3.1			CA392423	IRF8	chr16	85940745	+	MRPL14	chr6	44086998	-
intron-intron	ENST00000562492	ENST00000372014		ChiTaRS3.1			CA392423	IRF8	chr16	85940745	+	MRPL14	chr6	44086998	-
intron-intron	ENST00000356663	ENST00000306749		ChiTaRS3.1			BG982743	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000356663	ENST00000579758		ChiTaRS3.1			BG982743	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000333175	ENST00000306749		ChiTaRS3.1			BG982743	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000333175	ENST00000579758		ChiTaRS3.1			BG982743	TMEM259	chr19	1012147	+	FASN	chr17	80046844	+
intron-intron	ENST00000432054	ENST00000360839		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000432054	ENST00000297183		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000432054	ENST00000394723		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000432054	ENST00000394722		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000432054	ENST00000462121		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000432054	ENST00000544120		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000360839		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000297183		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000394723		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000394722		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000462121		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000393238	ENST00000544120		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000360839		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000297183		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000394723		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000394722		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000462121		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000426664	ENST00000544120		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000360839		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000297183		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000394723		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000394722		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000462121		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000329333	ENST00000544120		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000360839		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000297183		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000394723		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000394722		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000462121		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-intron	ENST00000515024	ENST00000544120		ChiTaRS3.1			U58663	TMCC1	chr3	129495192	+	ANKHD1	chr5	139802044	-
intron-3CDS	ENST00000452135	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000452135	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000452135	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000393360	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000393360	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000455781	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000455781	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000343111	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000343111	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000347470	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000347470	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000397072	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000397072	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000425491	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000425491	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000539014	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000539014	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000302640		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000354582		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000423119		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000456211		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000524170	ENST00000357086		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000544951		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000443694		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-intron	ENST00000524170	ENST00000463980		ChiTaRS3.1			AI361133	MAPK9	chr5	179660926	+	ITPR1	chr3	4752029	-
intron-3CDS	ENST00000399262	ENST00000399262		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399262	ENST00000402544		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399262	ENST00000399251		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399262	ENST00000542921		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000399262	ENST00000489372		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000402544	ENST00000399262		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000402544	ENST00000402544		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000402544	ENST00000399251		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000402544	ENST00000542921		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000402544	ENST00000489372		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399251	ENST00000399262		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399251	ENST00000402544		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399251	ENST00000399251		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000399251	ENST00000542921		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000399251	ENST00000489372		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000542921	ENST00000399262		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000542921	ENST00000402544		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000542921	ENST00000399251		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000542921	ENST00000542921		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000542921	ENST00000489372		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000489372	ENST00000399262		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000489372	ENST00000402544		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000489372	ENST00000399251		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-3CDS	ENST00000489372	ENST00000542921		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000489372	ENST00000489372		ChiTaRS3.1			AA805863	JMJD1C	chr10	64966436	-	JMJD1C	chr10	64966490	+
intron-intron	ENST00000265316	ENST00000265316		ChiTaRS3.1			BE378883	ABCB6	chr2	220084267	+	ABCB6	chr2	220084216	-
intron-intron	ENST00000265316	ENST00000439002		ChiTaRS3.1			BE378883	ABCB6	chr2	220084267	+	ABCB6	chr2	220084216	-
intron-intron	ENST00000439002	ENST00000265316		ChiTaRS3.1			BE378883	ABCB6	chr2	220084267	+	ABCB6	chr2	220084216	-
intron-intron	ENST00000439002	ENST00000439002		ChiTaRS3.1			BE378883	ABCB6	chr2	220084267	+	ABCB6	chr2	220084216	-
3UTR-3UTR	ENST00000424789	ENST00000424789		ChiTaRS3.1			BG253503	TANC2	chr17	61504371	-	TANC2	chr17	61504398	+
3UTR-intron	ENST00000424789	ENST00000389520		ChiTaRS3.1			BG253503	TANC2	chr17	61504371	-	TANC2	chr17	61504398	+
intron-3UTR	ENST00000389520	ENST00000424789		ChiTaRS3.1			BG253503	TANC2	chr17	61504371	-	TANC2	chr17	61504398	+
intron-intron	ENST00000389520	ENST00000389520		ChiTaRS3.1			BG253503	TANC2	chr17	61504371	-	TANC2	chr17	61504398	+
3UTR-3CDS	ENST00000366577	ENST00000535016		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000366577	ENST00000265872		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000366577	ENST00000543719		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-intron	ENST00000366577	ENST00000483264		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000535016		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000265872		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000418145	ENST00000543719		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-intron	ENST00000418145	ENST00000483264		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000535016		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000265872		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3CDS	ENST00000535889	ENST00000543719		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-intron	ENST00000535889	ENST00000483264		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000535016		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000265872		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-3CDS	ENST00000470570	ENST00000543719		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
3UTR-intron	ENST00000470570	ENST00000483264		ChiTaRS3.1			AW841013	MTR	chr1	237061603	+	CCAR1	chr10	70531012	-
intron-3UTR	ENST00000345985	ENST00000345985		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000345985	ENST00000381685		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000345985	ENST00000542668		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-intron	ENST00000345985	ENST00000538384		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000381685	ENST00000345985		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000381685	ENST00000381685		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000381685	ENST00000542668		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-intron	ENST00000381685	ENST00000538384		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000542668	ENST00000345985		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000542668	ENST00000381685		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000542668	ENST00000542668		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-intron	ENST00000542668	ENST00000538384		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000538384	ENST00000345985		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000538384	ENST00000381685		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000538384	ENST00000542668		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-intron	ENST00000538384	ENST00000538384		ChiTaRS3.1			AA887153	NOL10	chr2	10711980	+	NOL10	chr2	10711940	-
intron-3UTR	ENST00000292174	ENST00000398000		ChiTaRS3.1			BG984783	CXCR5	chr11	118760589	+	CXorf36	chrX	45008192	+
intron-intron	ENST00000292174	ENST00000477281		ChiTaRS3.1			BG984783	CXCR5	chr11	118760589	+	CXorf36	chrX	45008192	+
intron-intron	ENST00000292174	ENST00000377934		ChiTaRS3.1			BG984783	CXCR5	chr11	118760589	+	CXorf36	chrX	45008192	+
3UTR-intron	ENST00000244020	ENST00000403668		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000444075		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000287701		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000558662		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000523613		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000397358		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000519047		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000355231		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000524238		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
3UTR-intron	ENST00000244020	ENST00000517386		ChiTaRS3.1			AI122983	SRSF6	chr20	42091941	-	HMBOX1	chr8	28906614	-
intron-5UTR	ENST00000281282	ENST00000526767		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000281282	ENST00000530128		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000281282	ENST00000381057		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000557813	ENST00000526767		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000557813	ENST00000530128		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-5UTR	ENST00000557813	ENST00000381057		ChiTaRS3.1			AK130503	CGNL1	chr15	57816385	+	HTN3	chr4	70894176	+
intron-3CDS	ENST00000262030	ENST00000262030		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-3CDS	ENST00000262030	ENST00000552919		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-intron	ENST00000262030	ENST00000550162		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-3CDS	ENST00000552919	ENST00000262030		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-3CDS	ENST00000552919	ENST00000552919		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-intron	ENST00000552919	ENST00000550162		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-3CDS	ENST00000550162	ENST00000262030		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-3CDS	ENST00000550162	ENST00000552919		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-intron	ENST00000550162	ENST00000550162		ChiTaRS3.1			BG179093	ATP5B	chr12	57033812	+	ATP5B	chr12	57033065	-
intron-intron	ENST00000304863	ENST00000264908		ChiTaRS3.1			BI032173	UQCRFS1	chr19	29703613	+	ANXA3	chr4	79502926	-
intron-intron	ENST00000304863	ENST00000512884		ChiTaRS3.1			BI032173	UQCRFS1	chr19	29703613	+	ANXA3	chr4	79502926	-
intron-intron	ENST00000304863	ENST00000503570		ChiTaRS3.1			BI032173	UQCRFS1	chr19	29703613	+	ANXA3	chr4	79502926	-
intron-5UTR	ENST00000162749	ENST00000162749		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000162749	ENST00000540022		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000162749	ENST00000366159		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000162749	ENST00000437813		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000540022	ENST00000162749		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000540022	ENST00000540022		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000540022	ENST00000366159		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000540022	ENST00000437813		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000366159	ENST00000162749		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000366159	ENST00000540022		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000366159	ENST00000366159		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000366159	ENST00000437813		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000437813	ENST00000162749		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-5UTR	ENST00000437813	ENST00000540022		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000437813	ENST00000366159		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000437813	ENST00000437813		ChiTaRS3.1			X55313	TNFRSF1A	chr12	6451224	+	TNFRSF1A	chr12	6451149	-
intron-intron	ENST00000415930	ENST00000396324		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000415930	ENST00000452625		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000415930	ENST00000576790		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000415930	ENST00000300036		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000415930	ENST00000573908		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000356487	ENST00000396324		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000356487	ENST00000452625		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000356487	ENST00000576790		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000356487	ENST00000300036		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000356487	ENST00000573908		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000586425	ENST00000396324		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000586425	ENST00000452625		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000586425	ENST00000576790		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000586425	ENST00000300036		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000586425	ENST00000573908		ChiTaRS3.1			BF358813	GPI	chr19	34877899	+	MYH11	chr16	15898010	-
intron-intron	ENST00000554335	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000554335	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000554335	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000554335	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000251091	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000251091	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555112	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555112	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000392067	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000392067	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-3UTR	ENST00000357634	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
3UTR-intron	ENST00000357634	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000554335		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000251091		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000555112		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000392067		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-3UTR	ENST00000555192	ENST00000357634		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
intron-intron	ENST00000555192	ENST00000555192		ChiTaRS3.1			BF344193	SAMD4A	chr14	55258668	-	SAMD4A	chr14	55258824	+
5UTR-5UTR	ENST00000449054	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-intron	ENST00000449054	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000449054	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000449054	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000449054	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000449054	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000449054	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-intron	ENST00000379238	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379238	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-intron	ENST00000360802	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000360802	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-intron	ENST00000379239	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000379239	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-intron	ENST00000539807	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000539807	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-intron	ENST00000418786	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000418786	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-intron	ENST00000379225	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379225	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-intron	ENST00000379235	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
intron-5UTR	ENST00000379235	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000536252		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-intron	ENST00000480885	ENST00000545103		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000540348		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000543944		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000297661		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000379186		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
5UTR-5UTR	ENST00000480885	ENST00000359544		ChiTaRS3.1			DA792563	UBAP2	chr9	34048821	-	UBAP1	chr9	34220905	+
3UTR-3UTR	ENST00000534336	ENST00000534336		ChiTaRS3.1			BQ632833	MALAT1	chr11	65267661	+	MALAT1	chr11	65267132	+
intron-intron	ENST00000304992	ENST00000327355		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000304992	ENST00000555748		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000304992	ENST00000555696		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000304992	ENST00000553393		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000304992	ENST00000555064		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000304992	ENST00000555971		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000327355		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000555748		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000555696		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000553393		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000555064		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000572621	ENST00000555971		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000327355		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000555748		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000555696		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000553393		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000555064		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000575116	ENST00000555971		ChiTaRS3.1			AW877213	PRPF8	chr17	1559977	-	FAM174B	chr15	93273318	+
intron-intron	ENST00000407228	ENST00000261349		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000407228	ENST00000543091		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000407228	ENST00000540415		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000261349		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000543091		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
intron-intron	ENST00000219746	ENST00000540415		ChiTaRS3.1			BE067643	TOX3	chr16	52553439	+	LRP6	chr12	12401020	+
3UTR-intron	ENST00000474629	ENST00000370859		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000370855		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000535611		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
3UTR-intron	ENST00000474629	ENST00000469525		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000370859		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000370855		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000535611		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000475640	ENST00000469525		ChiTaRS3.1			AI702633	PARP14	chr3	122449678	+	SLC44A5	chr1	76135444	+
intron-intron	ENST00000344691	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000344691	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000344691	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000344691	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000344691	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000344691	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000325074	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000437180	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000300305	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000399240	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000486278	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000494829	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000357716		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000486284		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000389336		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000402647		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000403881		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000358356	ENST00000458641		ChiTaRS3.1			AY509915	RUNX1	chr21	36206777	+	GRM7	chr3	7723965	+
intron-intron	ENST00000371941	ENST00000483074		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000371941	ENST00000343788		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000371941	ENST00000535397		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000371941	ENST00000310528		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000396220	ENST00000483074		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000396220	ENST00000343788		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000396220	ENST00000535397		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000396220	ENST00000310528		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000496915	ENST00000483074		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000496915	ENST00000343788		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000496915	ENST00000535397		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
intron-intron	ENST00000496915	ENST00000310528		ChiTaRS3.1			BE774943	PREX1	chr20	47353392	+	SUGT1	chr13	53254174	-
In-frame	ENST00000435765	ENST00000359947		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
In-frame	ENST00000435765	ENST00000438120		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000435765	ENST00000372413		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000435765	ENST00000372414		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000435765	ENST00000422171		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000435765	ENST00000496447		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
In-frame	ENST00000292644	ENST00000359947		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
In-frame	ENST00000292644	ENST00000438120		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000292644	ENST00000372413		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000292644	ENST00000372414		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000292644	ENST00000422171		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000292644	ENST00000496447		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
In-frame	ENST00000544811	ENST00000359947		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
In-frame	ENST00000544811	ENST00000438120		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000544811	ENST00000372413		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
Frame-shit	ENST00000544811	ENST00000372414		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000544811	ENST00000422171		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
5CDS-intron	ENST00000544811	ENST00000496447		ChiTaRS3.1			BQ315283	PSMC2	chr7	103004625	-	PTPRF	chr1	44010784	+
intron-intron	ENST00000443765	ENST00000413366		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000443765	ENST00000583361		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000239891	ENST00000413366		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000239891	ENST00000583361		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000413537	ENST00000413366		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000413537	ENST00000583361		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000496689	ENST00000413366		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
intron-intron	ENST00000496689	ENST00000583361		ChiTaRS3.1			BF815383	ALG5	chr13	37524095	-	PRKCA	chr17	64524978	-
5CDS-intron	ENST00000296755	ENST00000334731		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
5CDS-intron	ENST00000296755	ENST00000377031		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
5CDS-intron	ENST00000296755	ENST00000486911		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
intron-intron	ENST00000504183	ENST00000334731		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
intron-intron	ENST00000504183	ENST00000377031		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
intron-intron	ENST00000504183	ENST00000486911		ChiTaRS3.1			AW882863	MAP1B	chr5	71491639	+	C9orf85	chr9	74573963	-
3UTR-intron	ENST00000499762	ENST00000377921		ChiTaRS3.1			AI587403	A2M-AS1	chr12	9220372	+	RSU1	chr10	16725245	+
3UTR-intron	ENST00000499762	ENST00000345264		ChiTaRS3.1			AI587403	A2M-AS1	chr12	9220372	+	RSU1	chr10	16725245	+
3UTR-intron	ENST00000499762	ENST00000602389		ChiTaRS3.1			AI587403	A2M-AS1	chr12	9220372	+	RSU1	chr10	16725245	+
3UTR-intron	ENST00000499762	ENST00000464074		ChiTaRS3.1			AI587403	A2M-AS1	chr12	9220372	+	RSU1	chr10	16725245	+
intron-intron	ENST00000450454	ENST00000450454		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000450454	ENST00000374601		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000450454	ENST00000461794		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000374601	ENST00000450454		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000374601	ENST00000374601		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000374601	ENST00000461794		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000461794	ENST00000450454		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000461794	ENST00000374601		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000461794	ENST00000461794		ChiTaRS3.1			AW812473	TCEA3	chr1	23734209	-	TCEA3	chr1	23743527	-
intron-intron	ENST00000394609	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394609	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000405240	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357376	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000317610	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000357732	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000337526	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000394611	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000404909	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000486085	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000354474	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000394609		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000405240		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000357376		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000317610		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000357732		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000337526		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000394611		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000404909		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000486085		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000354474		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000402434	ENST00000402434		ChiTaRS3.1			BE694253	RTN4	chr2	55214836	+	RTN4	chr2	55209651	+
intron-intron	ENST00000431635	ENST00000566780		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000406884		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000539474		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000402655		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000408984		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000355860		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000565791		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000431635	ENST00000569818		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000566780		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000406884		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000539474		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000402655		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000408984		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000355860		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000565791		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000236051	ENST00000569818		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000566780		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000406884		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000539474		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000402655		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000408984		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000355860		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000565791		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000472982	ENST00000569818		ChiTaRS3.1			BG547073	EBNA1BP2	chr1	43735689	-	WWOX	chr16	78615888	-
intron-intron	ENST00000268097	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000268097	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000268097	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000268097	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000268097	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000268097	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000566304	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000457859	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567159	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000429918	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000268097		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000566304		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000457859		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000567159		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000429918		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000567213	ENST00000567213		ChiTaRS3.1			BI007093	HEXA	chr15	72639096	-	HEXA	chr15	72639216	+
intron-intron	ENST00000346329	ENST00000346329		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000346329	ENST00000301843		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000346329	ENST00000527622		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000346329	ENST00000376561		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000346329	ENST00000538675		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000301843	ENST00000346329		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000301843	ENST00000301843		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000301843	ENST00000527622		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000301843	ENST00000376561		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000301843	ENST00000538675		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000527622	ENST00000346329		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000527622	ENST00000301843		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000527622	ENST00000527622		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000527622	ENST00000376561		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000527622	ENST00000538675		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000376561	ENST00000346329		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000376561	ENST00000301843		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000376561	ENST00000527622		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000376561	ENST00000376561		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000376561	ENST00000538675		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000538675	ENST00000346329		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000538675	ENST00000301843		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000538675	ENST00000527622		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000538675	ENST00000376561		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-intron	ENST00000538675	ENST00000538675		ChiTaRS3.1			BF922863	CTTN	chr11	70266075	-	CTTN	chr11	70266611	+
intron-3CDS	ENST00000454300	ENST00000377044		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-3CDS	ENST00000454300	ENST00000377066		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-intron	ENST00000454300	ENST00000396272		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-3CDS	ENST00000263635	ENST00000377044		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-3CDS	ENST00000263635	ENST00000377066		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-intron	ENST00000263635	ENST00000396272		ChiTaRS3.1			BF853743	TANC1	chr2	160001330	-	TMEM2	chr9	74360117	+
intron-3UTR	ENST00000221418	ENST00000221418		ChiTaRS3.1			BF911243	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000221418	ENST00000597805		ChiTaRS3.1			BF911243	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-3UTR	ENST00000597805	ENST00000221418		ChiTaRS3.1			BF911243	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
intron-intron	ENST00000597805	ENST00000597805		ChiTaRS3.1			BF911243	ECH1	chr19	39307135	+	ECH1	chr19	39306170	-
Frame-shit	ENST00000415149	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000415149	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000415149	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000402543	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000402543	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000325805	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000325805	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000416476	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
In-frame	ENST00000416476	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000416476	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
Frame-shit	ENST00000406780	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
5CDS-3UTR	ENST00000406780	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000415149		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000402543		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000325805		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000416476		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3CDS	ENST00000473542	ENST00000406780		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
intron-3UTR	ENST00000473542	ENST00000473542		ChiTaRS3.1			BI033303	BBX	chr3	107493617	+	BBX	chr3	107517442	-
3UTR-intron	ENST00000358933	ENST00000357654		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000351666		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000309486		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000346315		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000354071		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000352993		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000468300		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000591534		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000591849		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000586385		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000493795		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000471181		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
3UTR-intron	ENST00000358933	ENST00000491747		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000357654		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000351666		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000309486		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000346315		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000354071		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000352993		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000468300		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000591534		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000591849		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000586385		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000493795		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000471181		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000574770	ENST00000491747		ChiTaRS3.1			AW594233	EDC4	chr16	67918200	-	BRCA1	chr17	41284300	-
intron-intron	ENST00000542817	ENST00000542817		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000542817	ENST00000458643		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000542817	ENST00000448012		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000542817	ENST00000519305		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000458643	ENST00000542817		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000458643	ENST00000458643		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000458643	ENST00000448012		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000458643	ENST00000519305		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000448012	ENST00000542817		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000448012	ENST00000458643		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000448012	ENST00000448012		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000448012	ENST00000519305		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000519305	ENST00000542817		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000519305	ENST00000458643		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000519305	ENST00000448012		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000519305	ENST00000519305		ChiTaRS3.1			CN430673	NPIPB3	chr16	21638342	-	NPIPB3	chr16	21638392	+
intron-intron	ENST00000264170	ENST00000264170		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000264170	ENST00000375773		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000264170	ENST00000409512		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000264170	ENST00000410015		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000375773	ENST00000264170		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000375773	ENST00000375773		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000375773	ENST00000409512		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000375773	ENST00000410015		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000409512	ENST00000264170		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000409512	ENST00000375773		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000409512	ENST00000409512		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000409512	ENST00000410015		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000410015	ENST00000264170		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000410015	ENST00000375773		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000410015	ENST00000409512		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
intron-intron	ENST00000410015	ENST00000410015		ChiTaRS3.1			CB851853	KYNU	chr2	143746830	-	KYNU	chr2	143746729	+
5CDS-intron	ENST00000341547	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000341547	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000357063	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000377534	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000321797	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000526202	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
5CDS-intron	ENST00000465261	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000346145		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000349607		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000463781		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000475231		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-intron	ENST00000605961	ENST00000478685		ChiTaRS3.1			AW391853	LMO7	chr13	76430648	-	MUC4	chr3	195530516	+
intron-3CDS	ENST00000252699	ENST00000278407		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000252699	ENST00000340687		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000252699	ENST00000378323		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000252699	ENST00000378324		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000252699	ENST00000403558		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-intron	ENST00000252699	ENST00000531605		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000424234	ENST00000278407		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000424234	ENST00000340687		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000424234	ENST00000378323		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000424234	ENST00000378324		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000424234	ENST00000403558		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-intron	ENST00000424234	ENST00000531605		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000390009	ENST00000278407		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000390009	ENST00000340687		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000390009	ENST00000378323		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000390009	ENST00000378324		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000390009	ENST00000403558		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-intron	ENST00000390009	ENST00000531605		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000497637	ENST00000278407		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000497637	ENST00000340687		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-3CDS	ENST00000497637	ENST00000378323		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000497637	ENST00000378324		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-5UTR	ENST00000497637	ENST00000403558		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-intron	ENST00000497637	ENST00000531605		ChiTaRS3.1			H57753	ACTN4	chr19	39139779	+	SERPING1	chr11	57367417	+
intron-intron	ENST00000337530	ENST00000337530		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000337530	ENST00000374244		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000337530	ENST00000536272		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
5CDS-intron	ENST00000374244	ENST00000337530		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
5CDS-intron	ENST00000374244	ENST00000374244		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
5CDS-intron	ENST00000374244	ENST00000536272		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000536272	ENST00000337530		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000536272	ENST00000374244		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000536272	ENST00000536272		ChiTaRS3.1			BX506983	KIAA1958	chr9	115380748	-	KIAA1958	chr9	115387290	+
intron-intron	ENST00000604938	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604938	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604938	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604938	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401010	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401010	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401010	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401010	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000339388	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000339388	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000339388	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000339388	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000369323	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000369323	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000369323	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000369323	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000605317	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000605317	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000605317	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000605317	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000479926	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000479926	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000479926	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000479926	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604894	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604894	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604894	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000604894	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401009	ENST00000347136		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401009	ENST00000372406		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401009	ENST00000372410		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
intron-intron	ENST00000401009	ENST00000415344		ChiTaRS3.1			AW850213	NBPF11	chr1	146076151	+	GPR107	chr9	132873621	+
Frame-shit	ENST00000370223	ENST00000370223		ChiTaRS3.1			BM462893	LZTS2	chr10	102766570	+	LZTS2	chr10	102763431	+
Frame-shit	ENST00000370223	ENST00000370220		ChiTaRS3.1			BM462893	LZTS2	chr10	102766570	+	LZTS2	chr10	102763431	+
Frame-shit	ENST00000370220	ENST00000370223		ChiTaRS3.1			BM462893	LZTS2	chr10	102766570	+	LZTS2	chr10	102763431	+
Frame-shit	ENST00000370220	ENST00000370220		ChiTaRS3.1			BM462893	LZTS2	chr10	102766570	+	LZTS2	chr10	102763431	+
intron-intron	ENST00000379145	ENST00000586725		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000269195		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000591081		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379145	ENST00000537549		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000586725		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000269195		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000591081		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000356768	ENST00000537549		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000586725		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000269195		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000591081		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000379144	ENST00000537549		ChiTaRS3.1			AI656193	PCYT1B	chrX	24668190	-	GALNT1	chr18	33271098	-
intron-intron	ENST00000604747	ENST00000604747		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000604747	ENST00000603884		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000604747	ENST00000605830		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000604747	ENST00000605698		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000603884	ENST00000604747		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000603884	ENST00000603884		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000603884	ENST00000605830		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000603884	ENST00000605698		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605830	ENST00000604747		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605830	ENST00000603884		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605830	ENST00000605830		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605830	ENST00000605698		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605698	ENST00000604747		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605698	ENST00000603884		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605698	ENST00000605830		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-intron	ENST00000605698	ENST00000605698		ChiTaRS3.1			BM984293	TMCC1-AS1	chr3	129613695	-	TMCC1-AS1	chr3	129614495	-
intron-3CDS	ENST00000304043	ENST00000304043		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000304043	ENST00000506207		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000304043	ENST00000508488		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000304043	ENST00000506908		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000304043	ENST00000513012		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-3CDS	ENST00000506207	ENST00000304043		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506207	ENST00000506207		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506207	ENST00000508488		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506207	ENST00000506908		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506207	ENST00000513012		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-3CDS	ENST00000508488	ENST00000304043		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000508488	ENST00000506207		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000508488	ENST00000508488		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000508488	ENST00000506908		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000508488	ENST00000513012		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-3CDS	ENST00000506908	ENST00000304043		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506908	ENST00000506207		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506908	ENST00000508488		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506908	ENST00000506908		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000506908	ENST00000513012		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-3CDS	ENST00000513012	ENST00000304043		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000513012	ENST00000506207		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000513012	ENST00000508488		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000513012	ENST00000506908		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-5UTR	ENST00000513012	ENST00000513012		ChiTaRS3.1			BG028183	HINT1	chr5	130498340	+	HINT1	chr5	130498323	-
intron-3UTR	ENST00000427569	ENST00000413918		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000427569	ENST00000353548		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000427569	ENST00000443649		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000427569	ENST00000464942		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000427569	ENST00000267169		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-intron	ENST00000427569	ENST00000475784		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000416949	ENST00000413918		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000416949	ENST00000353548		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000416949	ENST00000443649		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000416949	ENST00000464942		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-3UTR	ENST00000416949	ENST00000267169		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
intron-intron	ENST00000416949	ENST00000475784		ChiTaRS3.1			BF363833	AARSD1	chr17	41109163	-	DIABLO	chr12	122692567	+
5CDS-3UTR	ENST00000435275	ENST00000442003		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000435275	ENST00000538197		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000435275	ENST00000541112		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000435275	ENST00000507071		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000435275	ENST00000345451		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000435275	ENST00000259997		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000435275	ENST00000382401		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000435275	ENST00000382395		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000442003		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000538197		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000541112		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000440692	ENST00000507071		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000440692	ENST00000345451		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000259997		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000382401		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000440692	ENST00000382395		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000442003		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000538197		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000541112		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000372360	ENST00000507071		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000372360	ENST00000345451		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000259997		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000382401		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000372360	ENST00000382395		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000442003		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000538197		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000541112		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-intron	ENST00000476545	ENST00000507071		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-intron	ENST00000476545	ENST00000345451		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000259997		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000382401		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
3UTR-3UTR	ENST00000476545	ENST00000382395		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000442003		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000538197		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000541112		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000360830	ENST00000507071		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-intron	ENST00000360830	ENST00000345451		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000259997		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000382401		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
5CDS-3UTR	ENST00000360830	ENST00000382395		ChiTaRS3.1			N33853	RPS24	chr10	79795369	-	CPEB2	chr4	15069023	-
intron-intron	ENST00000584667	ENST00000343028		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000584667	ENST00000542667		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000355423	ENST00000343028		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000355423	ENST00000542667		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000579864	ENST00000343028		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000579864	ENST00000542667		ChiTaRS3.1			BF908033	SAP30BP	chr17	73696321	+	TM7SF3	chr12	27158650	+
intron-intron	ENST00000344204	ENST00000344204		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344204	ENST00000537187		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344204	ENST00000509967		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344204	ENST00000515710		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344204	ENST00000344135		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000537187	ENST00000344204		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000537187	ENST00000537187		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000537187	ENST00000509967		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000537187	ENST00000515710		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000537187	ENST00000344135		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000509967	ENST00000344204		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000509967	ENST00000537187		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000509967	ENST00000509967		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000509967	ENST00000515710		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000509967	ENST00000344135		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000515710	ENST00000344204		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000515710	ENST00000537187		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000515710	ENST00000509967		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000515710	ENST00000515710		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000515710	ENST00000344135		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344135	ENST00000344204		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344135	ENST00000537187		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344135	ENST00000509967		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344135	ENST00000515710		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-intron	ENST00000344135	ENST00000344135		ChiTaRS3.1			BE089583	TRIO	chr5	14492659	+	TRIO	chr2	152205066	+
intron-3CDS	ENST00000354546	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000354546	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000354546	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000354546	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000354546	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000354546	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000523714	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000523714	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000523714	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000523714	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000523714	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000523714	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000356496	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000356496	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000356496	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000356496	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000356496	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000356496	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000377751	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000377751	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000377751	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000377751	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000377751	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000377751	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000521512	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000521512	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000521512	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000521512	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000521512	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000521512	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000519610	ENST00000354546		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000519610	ENST00000523714		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-3CDS	ENST00000519610	ENST00000356496		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000519610	ENST00000377751		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000519610	ENST00000521512		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
intron-intron	ENST00000519610	ENST00000519610		ChiTaRS3.1			BF333653	ANXA6	chr5	150506007	+	ANXA6	chr5	150512120	-
3UTR-5UTR	ENST00000372224	ENST00000448552		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372224	ENST00000306585		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372224	ENST00000523421		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372224	ENST00000518041		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372224	ENST00000574807		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372224	ENST00000398235		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372224	ENST00000519520		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372224	ENST00000520529		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372224	ENST00000522091		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000493027	ENST00000448552		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000493027	ENST00000306585		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000493027	ENST00000523421		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000493027	ENST00000518041		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000493027	ENST00000574807		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000493027	ENST00000398235		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000493027	ENST00000519520		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000493027	ENST00000520529		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000493027	ENST00000522091		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372218	ENST00000448552		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372218	ENST00000306585		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372218	ENST00000523421		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372218	ENST00000518041		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372218	ENST00000574807		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372218	ENST00000398235		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372218	ENST00000519520		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372218	ENST00000520529		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372218	ENST00000522091		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000372222	ENST00000448552		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000372222	ENST00000306585		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000372222	ENST00000523421		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000372222	ENST00000518041		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000372222	ENST00000574807		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000372222	ENST00000398235		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000372222	ENST00000519520		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-intron	ENST00000372222	ENST00000520529		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
intron-5UTR	ENST00000372222	ENST00000522091		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372217	ENST00000448552		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372217	ENST00000306585		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372217	ENST00000523421		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372217	ENST00000518041		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372217	ENST00000574807		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372217	ENST00000398235		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372217	ENST00000519520		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-intron	ENST00000372217	ENST00000520529		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-5UTR	ENST00000372217	ENST00000522091		ChiTaRS3.1			CN388633	KIF2C	chr1	45233315	-	CHTF8	chr16	69166466	-
3UTR-3UTR	ENST00000377724	ENST00000377724		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000377724	ENST00000242323		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000377724	ENST00000483167		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000242323	ENST00000377724		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000242323	ENST00000242323		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000242323	ENST00000483167		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000483167	ENST00000377724		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000483167	ENST00000242323		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
3UTR-3UTR	ENST00000483167	ENST00000483167		ChiTaRS3.1			BU737313	DCAF10	chr9	37861685	-	DCAF10	chr9	37861655	+
intron-intron	ENST00000578646	ENST00000578646		ChiTaRS3.1			DW412193	MIB1	chr18	19422299	+	MIB1	chr18	19421828	+
intron-intron	ENST00000578646	ENST00000261537		ChiTaRS3.1			DW412193	MIB1	chr18	19422299	+	MIB1	chr18	19421828	+
intron-intron	ENST00000261537	ENST00000578646		ChiTaRS3.1			DW412193	MIB1	chr18	19422299	+	MIB1	chr18	19421828	+
intron-intron	ENST00000261537	ENST00000261537		ChiTaRS3.1			DW412193	MIB1	chr18	19422299	+	MIB1	chr18	19421828	+
intron-intron	ENST00000520810	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520810	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000416505	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000519735	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000520835	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000379708	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000518983	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522147	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000520810		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000416505		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000519735		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000520835		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000379708		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000518983		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000522147		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000522785	ENST00000522785		ChiTaRS3.1			CA436493	IKBKB	chr8	42177276	-	IKBKB	chr8	42178211	-
intron-intron	ENST00000403829	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000403829	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000403829	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298687	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298687	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298687	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000350792	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000350792	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000350792	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397858	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397858	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397858	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554104	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554104	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554104	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000555158	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000555158	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000555158	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000553503	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000553503	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000553503	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397853	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397853	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397853	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000360463	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000360463	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000360463	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000556147	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000556147	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000556147	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397856	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397856	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397856	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397855	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397855	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397855	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554143	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554143	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554143	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397851	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397851	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397851	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397847	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397847	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397847	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298684	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298684	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000298684	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397844	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397844	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000397844	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554277	ENST00000262395		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554277	ENST00000444415		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000554277	ENST00000262396		ChiTaRS3.1			BI052853	NDRG2	chr14	21490669	-	TRAF4	chr17	27074986	-
intron-intron	ENST00000599539	ENST00000474485		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000599539	ENST00000451315		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000339471	ENST00000474485		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000339471	ENST00000451315		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000251453	ENST00000474485		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000251453	ENST00000451315		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000601655	ENST00000474485		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
intron-intron	ENST00000601655	ENST00000451315		ChiTaRS3.1			BE906373	RPS16	chr19	39926573	+	NOL7	chr6	13615623	+
3UTR-intron	ENST00000398022	ENST00000417172		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000361388		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000422748		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000361675		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000361901		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000393118		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000495522		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000424922		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000398022	ENST00000543443		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-intron	ENST00000398022	ENST00000466704		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-intron	ENST00000217315	ENST00000417172		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000361388		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000422748		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000361675		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000361901		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000393118		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000495522		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000424922		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-3UTR	ENST00000217315	ENST00000543443		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
3UTR-intron	ENST00000217315	ENST00000466704		ChiTaRS3.1			AW993553	TM9SF4	chr20	30754836	-	CALD1	chr7	134653150	-
intron-5UTR	ENST00000422163	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
3UTR-5UTR	ENST00000491100	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
3UTR-5UTR	ENST00000313601	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
3UTR-5UTR	ENST00000536647	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
intron-5UTR	ENST00000440628	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
intron-5UTR	ENST00000451956	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
3UTR-5UTR	ENST00000266027	ENST00000390168		ChiTaRS3.1			AI377593	GNAI2	chr3	50296586	-	H19	chr11	2018056	+
3UTR-3CDS	ENST00000466801	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
3UTR-3CDS	ENST00000466801	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
3UTR-5UTR	ENST00000466801	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409321	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409321	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
5CDS-5UTR	ENST00000409321	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409115	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409115	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
5CDS-5UTR	ENST00000409115	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000341369	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000341369	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
5CDS-5UTR	ENST00000341369	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409683	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000409683	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
5CDS-5UTR	ENST00000409683	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000410064	ENST00000383777		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
Frame-shit	ENST00000410064	ENST00000399451		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
5CDS-5UTR	ENST00000410064	ENST00000497037		ChiTaRS3.1			BQ900403	PTMA	chr2	232576668	-	ANKRD28	chr3	15719859	-
intron-3CDS	ENST00000397063	ENST00000397063		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000397062		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000446151		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397063	ENST00000464747		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000397063		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000397062		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000446151		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000397062	ENST00000464747		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000397063		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000397062		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000446151		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000446151	ENST00000464747		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000397063		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000397062		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000446151		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000464747	ENST00000464747		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000397063		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000397062		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000446151		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-3CDS	ENST00000423513	ENST00000464747		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			BU679413	NFE2L2	chr2	178095560	+	NFE2L2	chr2	178095614	-
intron-intron	ENST00000507166	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000507166	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000358575	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000358575	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000337488	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000337488	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000507922	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000507922	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000306932	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
5CDS-intron	ENST00000306932	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000510668	ENST00000257290		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000510668	ENST00000508170		ChiTaRS3.1			DB355043	FIP1L1	chr4	54324852	-	PDGFRA	chr4	54327780	-
intron-intron	ENST00000327435	ENST00000375098		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000327435	ENST00000478530		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000327435	ENST00000342043		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-3UTR	ENST00000327435	ENST00000341469		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-3UTR	ENST00000327435	ENST00000538344		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000382093	ENST00000375098		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000382093	ENST00000478530		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000382093	ENST00000342043		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-3UTR	ENST00000382093	ENST00000341469		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-3UTR	ENST00000382093	ENST00000538344		ChiTaRS3.1			BM456873	ADI1	chr2	3523204	-	TRIM14	chr9	100849516	-
intron-intron	ENST00000285599	ENST00000264731		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000382063		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000418709		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000320472		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000392460		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000440651		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000354600		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000437221		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000392463		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000392461		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000456148		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000285599	ENST00000449992		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000264731		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000382063		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000418709		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000320472		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000392460		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000440651		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000354600		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000437221		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000392463		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000392461		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000456148		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504248	ENST00000449992		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000264731		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000382063		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000418709		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000320472		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000392460		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000440651		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000354600		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000437221		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000392463		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000392461		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000456148		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000504960	ENST00000449992		ChiTaRS3.1			BQ331863	MAN2B2	chr4	6594897	-	TP63	chr3	189578930	+
intron-intron	ENST00000400959	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000400959	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000400959	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000400959	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000400959	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367025	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367025	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367025	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367025	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367025	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367026	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367026	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367026	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367026	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367026	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367024	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367024	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367024	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367024	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367024	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000010338	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000010338	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000010338	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000010338	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000010338	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367023	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367023	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367023	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367023	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
5CDS-intron	ENST00000367023	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000477431	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000477431	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000477431	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000477431	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000477431	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000467830	ENST00000585605		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000467830	ENST00000587950		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000467830	ENST00000309324		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000467830	ENST00000590389		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-intron	ENST00000467830	ENST00000587589		ChiTaRS3.1			BF847263	TRAF3IP3	chr1	209952705	+	C19orf70	chr19	5680088	+
intron-5UTR	ENST00000263238	ENST00000429829		ChiTaRS3.1			BF378923	ACTR3	chr2	114668456	-	XIST	chrX	73068409	-
intron-5UTR	ENST00000536059	ENST00000429829		ChiTaRS3.1			BF378923	ACTR3	chr2	114668456	-	XIST	chrX	73068409	-
intron-5UTR	ENST00000535589	ENST00000429829		ChiTaRS3.1			BF378923	ACTR3	chr2	114668456	-	XIST	chrX	73068409	-
intron-intron	ENST00000407690	ENST00000533507		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407690	ENST00000263774		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407690	ENST00000529276		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407690	ENST00000528192		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407690	ENST00000534208		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407690	ENST00000534716		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-intron	ENST00000407431	ENST00000533507		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407431	ENST00000263774		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407431	ENST00000529276		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407431	ENST00000528192		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407431	ENST00000534208		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407431	ENST00000534716		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-intron	ENST00000407148	ENST00000533507		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407148	ENST00000263774		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407148	ENST00000529276		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407148	ENST00000528192		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407148	ENST00000534208		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000407148	ENST00000534716		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-intron	ENST00000405938	ENST00000533507		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000405938	ENST00000263774		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000405938	ENST00000529276		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000405938	ENST00000528192		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000405938	ENST00000534208		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000405938	ENST00000534716		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-intron	ENST00000496523	ENST00000533507		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000496523	ENST00000263774		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000496523	ENST00000529276		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000496523	ENST00000528192		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000496523	ENST00000534208		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
intron-5UTR	ENST00000496523	ENST00000534716		ChiTaRS3.1			Z24803	TFIP11	chr22	26888241	-	NDUFS3	chr11	47600626	+
5UTR-3CDS	ENST00000324262	ENST00000295955		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
5UTR-3CDS	ENST00000324262	ENST00000449470		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
5UTR-3CDS	ENST00000579847	ENST00000295955		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
5UTR-3CDS	ENST00000579847	ENST00000449470		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
3UTR-3CDS	ENST00000580229	ENST00000295955		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
3UTR-3CDS	ENST00000580229	ENST00000449470		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
intron-3CDS	ENST00000324301	ENST00000295955		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
intron-3CDS	ENST00000324301	ENST00000449470		ChiTaRS3.1			BF814523	CNDP2	chr18	72163620	-	RPL9	chr4	39456258	-
In-frame	ENST00000389629	ENST00000389629		ChiTaRS3.1			BQ019593	RTF1	chr15	41767962	+	RTF1	chr15	41730564	+
5CDS-3UTR	ENST00000389629	ENST00000462276		ChiTaRS3.1			BQ019593	RTF1	chr15	41767962	+	RTF1	chr15	41730564	+
intron-3CDS	ENST00000462276	ENST00000389629		ChiTaRS3.1			BQ019593	RTF1	chr15	41767962	+	RTF1	chr15	41730564	+
intron-3UTR	ENST00000462276	ENST00000462276		ChiTaRS3.1			BQ019593	RTF1	chr15	41767962	+	RTF1	chr15	41730564	+
intron-3CDS	ENST00000556679	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000456570	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000477310	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000425368	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000497841	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000417261	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000427888	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000459734	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000455591	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000433503	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000474621	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000424727	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000436692	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000473139	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000399981	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000419920	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000465211	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000375455	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000489605	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000426239	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
5UTR-3CDS	ENST00000419411	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
intron-3CDS	ENST00000460958	ENST00000322723		ChiTaRS3.1			AI904273	CFB	chr6	3246583	-	NCL	chr2	232319957	+
3UTR-3UTR	ENST00000257868	ENST00000257868		ChiTaRS3.1			AW889083	GDF11	chr12	56143854	-	GDF11	chr12	56144970	-
intron-intron	ENST00000372396	ENST00000372396		ChiTaRS3.1			CV381433	KDM4A	chr1	44143928	-	KDM4A	chr1	44144545	+
intron-intron	ENST00000372396	ENST00000463151		ChiTaRS3.1			CV381433	KDM4A	chr1	44143928	-	KDM4A	chr1	44144545	+
intron-intron	ENST00000463151	ENST00000372396		ChiTaRS3.1			CV381433	KDM4A	chr1	44143928	-	KDM4A	chr1	44144545	+
intron-intron	ENST00000463151	ENST00000463151		ChiTaRS3.1			CV381433	KDM4A	chr1	44143928	-	KDM4A	chr1	44144545	+
intron-intron	ENST00000532456	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000532456	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000532456	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000532456	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000532456	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000532456	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000532456	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000532456	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000539648	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000539648	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000539648	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000539648	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000539648	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000539648	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000539648	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000539648	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000528499	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000528499	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000528499	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000528499	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000528499	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000528499	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000528499	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000528499	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000263574	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000263574	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000263574	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000263574	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000263574	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000263574	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000263574	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000263574	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000345598	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000345598	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000345598	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000345598	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-intron	ENST00000345598	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000345598	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000345598	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
intron-3UTR	ENST00000345598	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000338167	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000338167	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000338167	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000338167	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000338167	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000338167	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000338167	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000338167	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000278756	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000278756	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000278756	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000278756	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000278756	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000278756	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000278756	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000278756	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000543137	ENST00000532456		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000543137	ENST00000539648		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000543137	ENST00000528499		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000543137	ENST00000263574		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-intron	ENST00000543137	ENST00000345598		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000543137	ENST00000338167		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000543137	ENST00000278756		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
3UTR-3UTR	ENST00000543137	ENST00000543137		ChiTaRS3.1			BU676663	APLP2	chr11	130013732	-	APLP2	chr11	130013759	+
5CDS-intron	ENST00000281382	ENST00000298858		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000520328		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000256324		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000521077		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000518665		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000518868		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000519019		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000523816		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000525393		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000428926		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000522322		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000523771		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000412671		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000281382	ENST00000517877		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-3UTR	ENST00000281382	ENST00000523576		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000298858		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000520328		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000256324		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000521077		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000518665		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000518868		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000519019		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000523816		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000525393		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000428926		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000522322		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000523771		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000412671		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000306465	ENST00000517877		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-3UTR	ENST00000306465	ENST00000523576		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000298858		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000520328		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000256324		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000521077		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000518665		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000518868		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000519019		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000523816		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000525393		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000428926		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000522322		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000523771		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000412671		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-intron	ENST00000495933	ENST00000517877		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
5CDS-3UTR	ENST00000495933	ENST00000523576		ChiTaRS3.1			BC039303	PIGF	chr2	46839366	-	C14orf159	chr14	91691027	+
intron-intron	ENST00000393500	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393500	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393494	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000403559	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-intron	ENST00000408937	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000350908	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393498	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393489	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000393491	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000459666	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000378237	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000360232	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000390668	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000393500		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000393494		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000403559		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000408937		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000350908		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000393498		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000393489		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000393491		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000459666		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000378237		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000360232		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000390668		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
intron-intron	ENST00000462331	ENST00000462331		ChiTaRS3.1			BU742603	FOXP2	chr7	114333711	-	FOXP2	chr14	81644884	+
3UTR-3UTR	ENST00000320394	ENST00000320394		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000564186		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000541926		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000433597		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
3UTR-intron	ENST00000320394	ENST00000562762		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000564186	ENST00000320394		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000564186		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000541926		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000433597		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000564186	ENST00000562762		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000541926	ENST00000320394		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000564186		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000541926		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000433597		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000541926	ENST00000562762		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000433597	ENST00000320394		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000564186		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000541926		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000433597		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000433597	ENST00000562762		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-3UTR	ENST00000562762	ENST00000320394		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000564186		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000541926		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000433597		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000562762	ENST00000562762		ChiTaRS3.1			CN478643	IQCK	chr16	19868392	-	IQCK	chr16	19868251	+
intron-intron	ENST00000380393	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000380393	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000216877	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000216877	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000358719	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000358719	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000399903	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000399903	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000425918	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000425918	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000318266	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000318266	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000356147	ENST00000361204		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000356147	ENST00000491541		ChiTaRS3.1			AI655913	PTPRA	chr20	3013174	+	SREBF2	chr22	42270613	-
intron-intron	ENST00000381638	ENST00000381638		ChiTaRS3.1			W27943	ZZEF1	chr17	3974402	+	ZZEF1	chr17	3975071	-
intron-intron	ENST00000381638	ENST00000574474		ChiTaRS3.1			W27943	ZZEF1	chr17	3974402	+	ZZEF1	chr17	3975071	-
intron-intron	ENST00000574474	ENST00000381638		ChiTaRS3.1			W27943	ZZEF1	chr17	3974402	+	ZZEF1	chr17	3975071	-
intron-intron	ENST00000574474	ENST00000574474		ChiTaRS3.1			W27943	ZZEF1	chr17	3974402	+	ZZEF1	chr17	3975071	-
intron-intron	ENST00000439602	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000439602	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000474973	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476222	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000454021	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000486781	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000484321	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000457341	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476337	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000494232	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000434122	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000470276	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000211372	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000477055	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000476288	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000440980	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000439602		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000474973		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000476222		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000454021		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000486781		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000484321		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000457341		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000476337		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000494232		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000434122		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000470276		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000211372		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000477055		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000476288		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000440980		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000497078	ENST00000497078		ChiTaRS3.1			AW865643	RPS18	chr6	4720315	-	RPS18	chr6	4720405	+
intron-intron	ENST00000304613	ENST00000540235		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000304613	ENST00000393930		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000304613	ENST00000393931		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000304613	ENST00000310706		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368572	ENST00000540235		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368572	ENST00000393930		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368572	ENST00000393931		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368572	ENST00000310706		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368571	ENST00000540235		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368571	ENST00000393930		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368571	ENST00000393931		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000368571	ENST00000310706		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000530127	ENST00000540235		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000530127	ENST00000393930		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000530127	ENST00000393931		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
intron-intron	ENST00000530127	ENST00000310706		ChiTaRS3.1			BF772143	KNDC1	chr10	135014690	-	JUP	chr17	39845297	+
5CDS-3UTR	ENST00000303210	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000303210	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000436220	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000424361	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000419828	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000427895	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393926	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000303210		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000436220		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000424361		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000419828		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000427895		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000393926		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
5CDS-3UTR	ENST00000393924	ENST00000393924		ChiTaRS3.1			BQ326073	GNB2	chr7	100275213	-	GNB2	chr7	100276623	+
intron-3UTR	ENST00000529805	ENST00000324849		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000529805	ENST00000324815		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000529805	ENST00000521829		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000529805	ENST00000521005		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000529805	ENST00000521162		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-3UTR	ENST00000301919	ENST00000324849		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000301919	ENST00000324815		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000301919	ENST00000521829		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000301919	ENST00000521005		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000301919	ENST00000521162		ChiTaRS3.1			Z41533	MSANTD4	chr11	105879196	+	VPS37A	chr8	17154825	-
intron-intron	ENST00000604900	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000604900	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000412716	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000449723	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549555	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000439799	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000425012	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000549732	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551534	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000604900		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000412716		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000449723		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000549555		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000439799		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000425012		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000549732		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000551534		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
intron-intron	ENST00000551313	ENST00000551313		ChiTaRS3.1			BF903343	DAZAP2	chr12	51635088	-	DAZAP2	chr12	51634924	+
5CDS-intron	ENST00000296755	ENST00000335762		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-3UTR	ENST00000296755	ENST00000399655		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000480911		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399644		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000344100		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399638		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399629		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399597		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000327702		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399621		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399649		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399637		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000402845		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399591		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399641		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000347598		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399606		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399595		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399601		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399603		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399634		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000399617		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000406454		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
5CDS-intron	ENST00000296755	ENST00000491104		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000335762		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-3UTR	ENST00000504183	ENST00000399655		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000480911		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399644		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000344100		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399638		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399629		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399597		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000327702		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399621		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399649		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399637		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000402845		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399591		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399641		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000347598		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399606		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399595		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399601		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399603		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399634		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000399617		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000406454		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-intron	ENST00000504183	ENST00000491104		ChiTaRS3.1			BF960613	MAP1B	chr5	71490371	+	CACNA1C	chr12	2801390	-
intron-3UTR	ENST00000356352	ENST00000277865		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000356352	ENST00000537649		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000356352	ENST00000544149		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000356352	ENST00000465164		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000357604	ENST00000277865		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000357604	ENST00000537649		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000357604	ENST00000544149		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000357604	ENST00000465164		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000397053	ENST00000277865		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000397053	ENST00000537649		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000397053	ENST00000544149		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000397053	ENST00000465164		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000460569	ENST00000277865		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-3UTR	ENST00000460569	ENST00000537649		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000460569	ENST00000544149		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000460569	ENST00000465164		ChiTaRS3.1			BI054523	UPF2	chr10	12071117	-	GLUD1	chr10	88811305	-
intron-intron	ENST00000427442	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000427442	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000427442	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000427442	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000427442	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000427442	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000418998	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000444063	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373135	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000373134	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000427442		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000418998		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000444063		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000373135		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000373134		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000457824	ENST00000457824		ChiTaRS3.1			BX489833	L3MBTL1	chr20	42146646	-	L3MBTL1	chr20	42146445	+
intron-intron	ENST00000379834	ENST00000467442		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000476809		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000485419		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000337808		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000527095		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000412423		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
intron-intron	ENST00000379834	ENST00000460298		ChiTaRS3.1			BF359973	RIOK1	chr6	7411567	-	IQCJ-SCHIP1	chr3	159346310	-
3UTR-intron	ENST00000299300	ENST00000380958		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000299300	ENST00000399613		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000299300	ENST00000282391		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000299300	ENST00000483842		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000544368	ENST00000380958		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000544368	ENST00000399613		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000544368	ENST00000282391		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000544368	ENST00000483842		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000543146	ENST00000380958		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000543146	ENST00000399613		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000543146	ENST00000282391		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
3UTR-intron	ENST00000543146	ENST00000483842		ChiTaRS3.1			AW518263	CCT2	chr12	69995262	-	PAN3	chr13	28793870	-
intron-intron	ENST00000381352	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000381352	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000381352	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000381352	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000405154	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000405154	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000405154	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000542865	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000542865	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000542865	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000541490	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-3UTR	ENST00000541490	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
3UTR-intron	ENST00000541490	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000282884	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000282884	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000282884	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000381352		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000538081	ENST00000405154		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000542865		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-3UTR	ENST00000538081	ENST00000541490		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000282884		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000538081	ENST00000538081		ChiTaRS3.1			AA829213	RASSF8	chr12	26223180	+	RASSF8	chr12	26223266	-
intron-intron	ENST00000488834	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000488834	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000488834	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000474597	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000474597	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000244763	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000244763	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000397511	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000397511	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000534851	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000534851	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000489567	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000489567	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000479365	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000479365	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000488834		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000474597		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-3UTR	ENST00000462112	ENST00000244763		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000397511		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000534851		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000489567		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000479365		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-intron	ENST00000462112	ENST00000462112		ChiTaRS3.1			AK025753	SSR1	chr6	7284071	-	SSR1	chr6	7286878	-
intron-5UTR	ENST00000393700	ENST00000541222		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000393700	ENST00000316856		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000393700	ENST00000586534		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000393700	ENST00000592268		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-3UTR	ENST00000393700	ENST00000588826		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000412763	ENST00000541222		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000412763	ENST00000316856		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000412763	ENST00000586534		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000412763	ENST00000592268		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-3UTR	ENST00000412763	ENST00000588826		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000369997	ENST00000541222		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000369997	ENST00000316856		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000369997	ENST00000586534		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000369997	ENST00000592268		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-3UTR	ENST00000369997	ENST00000588826		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000462086	ENST00000541222		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000462086	ENST00000316856		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000462086	ENST00000586534		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-5UTR	ENST00000462086	ENST00000592268		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-3UTR	ENST00000462086	ENST00000588826		ChiTaRS3.1			BF799253	RENBP	chrX	153205691	-	RAD23A	chr19	13059069	+
intron-intron	ENST00000284878	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000284878	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000284878	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000284878	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000284878	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000284878	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400166	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000356275	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400165	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000306618	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000284878		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000400166		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000356275		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000400165		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000306618		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
intron-intron	ENST00000400169	ENST00000400169		ChiTaRS3.1			CB162053	CXADR	chr21	18888385	-	CXADR	chr21	18888635	+
3UTR-3UTR	ENST00000340415	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000340415	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000340415	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000340415	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000340415	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000340415	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-3UTR	ENST00000402449	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-3UTR	ENST00000402449	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000402449	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000402449	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000402449	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000402449	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-3UTR	ENST00000528438	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-3UTR	ENST00000528438	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000528438	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000528438	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000528438	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
intron-intron	ENST00000528438	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392615	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392615	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392615	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392615	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392615	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392615	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392614	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392614	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392614	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392614	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392614	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392614	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392613	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392613	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392613	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392613	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392613	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392613	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392612	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392612	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392612	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392612	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392612	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392612	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392610	ENST00000264657		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-3UTR	ENST00000392610	ENST00000585517		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392610	ENST00000389272		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392610	ENST00000588969		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392610	ENST00000404395		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
3UTR-intron	ENST00000392610	ENST00000590776		ChiTaRS3.1			BE220933	RAB37	chr17	72742619	-	STAT3	chr17	40467141	+
5CDS-intron	ENST00000370282	ENST00000409478		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370282	ENST00000329971		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370282	ENST00000264160		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370282	ENST00000410054		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370282	ENST00000409606		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370282	ENST00000443537		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000409478		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000329971		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000264160		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000410054		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000409606		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000483033	ENST00000443537		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000409478		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000329971		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000264160		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000410054		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000409606		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000479918	ENST00000443537		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000409478		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000329971		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000264160		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000410054		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000409606		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
5CDS-intron	ENST00000370280	ENST00000443537		ChiTaRS3.1			AI681273	TMED5	chr1	93645609	-	R3HDM1	chr2	136432890	+
intron-intron	ENST00000379122	ENST00000335762		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399655		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000480911		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399644		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000344100		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399638		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399629		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399597		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000327702		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399621		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399649		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399637		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000402845		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399591		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399641		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000347598		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399606		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399595		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399601		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399603		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399634		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000399617		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000406454		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000379122	ENST00000491104		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000335762		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399655		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000480911		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399644		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000344100		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399638		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399629		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399597		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000327702		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399621		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399649		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399637		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000402845		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399591		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399641		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000347598		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399606		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399595		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399601		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399603		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399634		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000399617		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000406454		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000332496	ENST00000491104		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000335762		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399655		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000480911		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399644		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000344100		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399638		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399629		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399597		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000327702		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399621		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399649		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399637		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000402845		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399591		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399641		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000347598		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399606		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399595		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399601		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399603		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399634		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000399617		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000406454		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
intron-intron	ENST00000560263	ENST00000491104		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000335762		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399655		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000480911		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399644		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000344100		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399638		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399629		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399597		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000327702		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399621		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399649		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399637		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000402845		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399591		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399641		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000347598		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399606		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399595		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399601		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399603		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399634		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000399617		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000406454		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
3UTR-intron	ENST00000411539	ENST00000491104		ChiTaRS3.1			AW897913	SEMA4B	chr15	90772681	+	CACNA1C	chr12	2407303	+
5CDS-intron	ENST00000367545	ENST00000552828		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
5CDS-3UTR	ENST00000367545	ENST00000378026		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
intron-intron	ENST00000367526	ENST00000552828		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
intron-3UTR	ENST00000367526	ENST00000378026		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
intron-intron	ENST00000480333	ENST00000552828		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
intron-3UTR	ENST00000480333	ENST00000378026		ChiTaRS3.1			BF750813	UTRN	chr6	144803450	-	CKAP4	chr12	106631834	+
intron-3CDS	ENST00000366730	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000391865	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366726	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000312726	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
Frame-shit	ENST00000366728	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366723	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366722	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3CDS	ENST00000366721	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366718	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000470040	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
3UTR-3CDS	ENST00000366716	ENST00000369582		ChiTaRS3.1			CF529503	GUK1	chr1	228336550	-	CGA	chr6	87795552	-
intron-3UTR	ENST00000571688	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000571688	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571688	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000413364	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000413364	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000413364	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000339430	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000339430	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000339430	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000381810	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000381810	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000381810	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000570904	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000570904	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000570904	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000571459	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000571459	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571459	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000572255	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000572255	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000572255	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000576036	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000576036	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000576036	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000574763	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000574763	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574763	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000571976	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000571976	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000571976	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000574703	ENST00000395388		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-3UTR	ENST00000574703	ENST00000374982		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000383127		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000459705		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000434866		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000416883		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000481943		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000411505		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000414698		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000546379		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000493431		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000418111		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000383259		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000551750		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000461633		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000383258		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000442960		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000549531		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000482781		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000415767		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000411524		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000553193		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000498597		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000574703	ENST00000427753		ChiTaRS3.1			CD366083	LITAF	chr16	11642607	+	HLA-DRA	chr6	32412472	-
intron-intron	ENST00000272238	ENST00000272238		ChiTaRS3.1			BE840923	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
intron-3UTR	ENST00000272238	ENST00000381661		ChiTaRS3.1			BE840923	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
3UTR-intron	ENST00000381661	ENST00000272238		ChiTaRS3.1			BE840923	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
3UTR-3UTR	ENST00000381661	ENST00000381661		ChiTaRS3.1			BE840923	ATP6V1C2	chr2	10924887	+	ATP6V1C2	chr2	10924739	-
intron-3CDS	ENST00000395555	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000395555	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000395555	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000494157	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000494157	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000494157	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000225740	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000225740	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000225740	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000444455	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000444455	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000444455	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000457500	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000457500	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000457500	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000485231	ENST00000541428		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000485231	ENST00000379454		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000523897		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522919		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000356457		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000518068		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517903		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000445642		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517847		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522835		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517856		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000389204		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000522603		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000379449		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-intron	ENST00000485231	ENST00000517661		ChiTaRS3.1			BU685263	ALDH3A1	chr17	19641367	+	ASPH	chr8	62596725	-
intron-3CDS	ENST00000377795	ENST00000377795		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000377795	ENST00000353334		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000377795	ENST00000524315		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000377795	ENST00000009530		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000353334	ENST00000377795		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000353334	ENST00000353334		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000353334	ENST00000524315		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000353334	ENST00000009530		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000524315	ENST00000377795		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000524315	ENST00000353334		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000524315	ENST00000524315		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000524315	ENST00000009530		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000009530	ENST00000377795		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000009530	ENST00000353334		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000009530	ENST00000524315		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000009530	ENST00000009530		ChiTaRS3.1			BU618143	CD74	chr5	149781270	+	CD74	chr5	149792310	-
intron-3CDS	ENST00000445937	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000445937	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000531443	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000531443	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000517566	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000517566	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000452423	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000452423	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000442977	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000442977	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000521963	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000521963	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000312046	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000312046	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000449762	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000449762	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000297447	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000297447	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000521592	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000521592	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3CDS	ENST00000497705	ENST00000310300		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-5UTR	ENST00000497705	ENST00000497245		ChiTaRS3.1			AW182813	OXR1	chr8	107284509	-	LRCH4	chr7	100179483	+
intron-3UTR	ENST00000543523	ENST00000262187		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000543523	ENST00000472642		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000543523	ENST00000496004		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-3UTR	ENST00000281172	ENST00000262187		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000281172	ENST00000472642		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000281172	ENST00000496004		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-3UTR	ENST00000543612	ENST00000262187		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000543612	ENST00000472642		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000543612	ENST00000496004		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-3UTR	ENST00000540613	ENST00000262187		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000540613	ENST00000472642		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000540613	ENST00000496004		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-3UTR	ENST00000542903	ENST00000262187		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000542903	ENST00000472642		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000542903	ENST00000496004		ChiTaRS3.1			BF930593	EPS8	chr12	15776166	-	RHEB	chr7	151163751	+
intron-intron	ENST00000410108	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000410108	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000410108	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000410108	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000410108	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000410108	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000325147	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000325147	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000325147	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000325147	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000325147	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000325147	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000382762	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000382762	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000382762	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000382762	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000382762	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000382762	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000529614	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000529614	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000529614	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000529614	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000529614	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000529614	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000332865	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000332865	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000332865	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000332865	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000332865	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000332865	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000486280	ENST00000410108		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000486280	ENST00000325147		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-3UTR	ENST00000486280	ENST00000382762		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000486280	ENST00000529614		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000486280	ENST00000332865		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000486280	ENST00000486280		ChiTaRS3.1			AW939813	BET1L	chr11	203740	-	BET1L	chr11	204491	+
intron-intron	ENST00000281419	ENST00000281419		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000281419	ENST00000315273		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000281419	ENST00000491413		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000281419		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000315273		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000315273	ENST00000491413		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000281419		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000315273		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000491413	ENST00000491413		ChiTaRS3.1			BE073833	ASAP2	chr2	9495852	-	ASAP2	chr2	9495815	+
intron-intron	ENST00000371586	ENST00000371586		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000284376		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000460261		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000371586	ENST00000438831		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000371586		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000284376		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000460261		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000284376	ENST00000438831		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000371586		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000284376		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000460261		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000460261	ENST00000438831		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000371586		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000284376		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000460261		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000438831	ENST00000438831		ChiTaRS3.1			BF885523	CC2D1B	chr1	52823011	+	CC2D1B	chr1	52825358	-
intron-intron	ENST00000241261	ENST00000361204		ChiTaRS3.1			DA951173	TNFSF10	chr3	172232702	-	SREBF2	chr22	42318720	+
intron-intron	ENST00000241261	ENST00000491541		ChiTaRS3.1			DA951173	TNFSF10	chr3	172232702	-	SREBF2	chr22	42318720	+
intron-intron	ENST00000420541	ENST00000361204		ChiTaRS3.1			DA951173	TNFSF10	chr3	172232702	-	SREBF2	chr22	42318720	+
intron-intron	ENST00000420541	ENST00000491541		ChiTaRS3.1			DA951173	TNFSF10	chr3	172232702	-	SREBF2	chr22	42318720	+
intron-3CDS	ENST00000374001	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000374001	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000374001	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373993	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000373993	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373995	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000373995	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000373997	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000373997	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395495	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000395495	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000282641	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000282641	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000395489	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000395489	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000374001		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000373993		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000373995		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000373997		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000395495		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000282641		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3CDS	ENST00000493415	ENST00000395489		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-intron	ENST00000493415	ENST00000493415		ChiTaRS3.1			AW300983	A1CF	chr10	52566513	+	A1CF	chr10	52566630	-
intron-3UTR	ENST00000397130	ENST00000397130		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000397130	ENST00000323443		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000397130	ENST00000563454		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000323443	ENST00000397130		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000323443	ENST00000323443		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000323443	ENST00000563454		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000563454	ENST00000397130		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000563454	ENST00000323443		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000563454	ENST00000563454		ChiTaRS3.1			BQ015293	LRRC57	chr15	42836522	+	LRRC57	chr15	42835670	+
intron-3UTR	ENST00000252699	ENST00000261590		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-intron	ENST00000252699	ENST00000585206		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-3UTR	ENST00000424234	ENST00000261590		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-intron	ENST00000424234	ENST00000585206		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-3UTR	ENST00000390009	ENST00000261590		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-intron	ENST00000390009	ENST00000585206		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-3UTR	ENST00000497637	ENST00000261590		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
intron-intron	ENST00000497637	ENST00000585206		ChiTaRS3.1			BF754373	ACTN4	chr19	39185187	-	DSG2	chr18	29127358	-
5CDS-3UTR	ENST00000200453	ENST00000366641		ChiTaRS3.1			BE694093	PPP1R15A	chr19	49377057	-	EGLN1	chr1	231500635	-
5CDS-intron	ENST00000200453	ENST00000476717		ChiTaRS3.1			BE694093	PPP1R15A	chr19	49377057	-	EGLN1	chr1	231500635	-
intron-intron	ENST00000339859	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000339859	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000339859	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000339859	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000339859	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000408019	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000408019	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000408019	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000408019	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000408019	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000428547	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000428547	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000428547	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000428547	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000428547	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000394811	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000394811	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000394811	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000394811	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000394811	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000497106	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000497106	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000497106	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000497106	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000497106	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000422491	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000422491	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000422491	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000422491	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000422491	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000319786	ENST00000397096		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000319786	ENST00000427057		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000319786	ENST00000228820		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000319786	ENST00000447133		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-intron	ENST00000319786	ENST00000476985		ChiTaRS3.1			BG996713	USP54	chr10	75257668	+	PARP11	chr12	3936899	-
intron-3UTR	ENST00000381298	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000336909	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000381287	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000502326	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000381294	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000536319	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000381293	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000381286	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000522633	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000396816	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-3UTR	ENST00000577363	ENST00000290551		ChiTaRS3.1			AI660373	IL6ST	chr5	55240764	-	BTG2	chr1	203277055	-
intron-intron	ENST00000323060	ENST00000323060		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-3UTR	ENST00000323060	ENST00000263275		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000323060	ENST00000544371		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000263275	ENST00000323060		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-3UTR	ENST00000263275	ENST00000263275		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000263275	ENST00000544371		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000544371	ENST00000323060		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-3UTR	ENST00000544371	ENST00000263275		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000544371	ENST00000544371		ChiTaRS3.1			BG994363	OPA3	chr19	46056864	+	OPA3	chr19	46054019	+
intron-intron	ENST00000444214	ENST00000371657		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000396059		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000371674		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000371677		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000340309		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000420027		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000444214	ENST00000415862		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000371657		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000396059		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000371674		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000371677		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000340309		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000420027		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000550765	ENST00000415862		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000371657		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000396059		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000371674		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000371677		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000340309		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000420027		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000552878	ENST00000415862		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000371657		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000396059		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000371674		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000371677		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000340309		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000420027		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000453172	ENST00000415862		ChiTaRS3.1			BF089583	FKBP11	chr12	49316490	-	UBE2V1	chr20	48725275	-
intron-intron	ENST00000504032	ENST00000361756		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000533380		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000393713		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000490867		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000545854		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000504032	ENST00000530137		ChiTaRS3.1			AI239943	UGDH-AS1	chr4	39590738	+	RNF121	chr11	71695361	-
intron-intron	ENST00000496817	ENST00000487917		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
intron-intron	ENST00000496817	ENST00000323927		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
intron-intron	ENST00000368719	ENST00000487917		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
intron-intron	ENST00000368719	ENST00000323927		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
intron-intron	ENST00000368720	ENST00000487917		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
intron-intron	ENST00000368720	ENST00000323927		ChiTaRS3.1			BQ009213	S100A6	chr1	153507300	+	ANAPC2	chr9	140073196	+
3UTR-intron	ENST00000378536	ENST00000288022		ChiTaRS3.1			BE465503	SKI	chr1	2241440	-	PDF	chr16	69363212	+
intron-intron	ENST00000478223	ENST00000288022		ChiTaRS3.1			BE465503	SKI	chr1	2241440	-	PDF	chr16	69363212	+
Frame-shit	ENST00000263849	ENST00000216951		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
In-frame	ENST00000263849	ENST00000541098		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
5CDS-intron	ENST00000263849	ENST00000451957		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
intron-3CDS	ENST00000521176	ENST00000216951		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
intron-3CDS	ENST00000521176	ENST00000541098		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
intron-intron	ENST00000521176	ENST00000451957		ChiTaRS3.1			AI802443	ZC2HC1A	chr8	79627472	-	GSS	chr20	33530340	+
intron-intron	ENST00000607016	ENST00000303714		ChiTaRS3.1			BF948613	NUDT3	chr6	34249893	+	ANTXR1	chr2	69437463	-
intron-intron	ENST00000607016	ENST00000409829		ChiTaRS3.1			BF948613	NUDT3	chr6	34249893	+	ANTXR1	chr2	69437463	-
intron-intron	ENST00000607016	ENST00000409349		ChiTaRS3.1			BF948613	NUDT3	chr6	34249893	+	ANTXR1	chr2	69437463	-
intron-intron	ENST00000523492	ENST00000523492		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000523492	ENST00000286234		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000523492	ENST00000518057		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000523492		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000286234		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000286234	ENST00000518057		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000523492		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000286234		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-intron	ENST00000518057	ENST00000518057		ChiTaRS3.1			AK022403	DEPTOR	chr8	121050216	+	DEPTOR	chr8	121048080	+
intron-3UTR	ENST00000410087	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000410087	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000410087	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000410087	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000410087	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000410087	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000409440	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374969	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000339098	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000374970	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000372572		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000372573		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000361346		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000361776		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000545068		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
intron-3UTR	ENST00000479558	ENST00000372571		ChiTaRS3.1			BU181033	CERKL	chr2	182418219	-	FOXJ3	chr1	42644080	+
Frame-shit	ENST00000448150	ENST00000344034		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
Frame-shit	ENST00000448150	ENST00000350803		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
Frame-shit	ENST00000367649	ENST00000344034		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
Frame-shit	ENST00000367649	ENST00000350803		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
intron-3CDS	ENST00000465723	ENST00000344034		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
intron-3CDS	ENST00000465723	ENST00000350803		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
Frame-shit	ENST00000462775	ENST00000344034		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
Frame-shit	ENST00000462775	ENST00000350803		ChiTaRS3.1			CB851163	RASAL2	chr1	178412056	-	PPM1G	chr2	27605422	-
3UTR-intron	ENST00000281282	ENST00000337137		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
3UTR-intron	ENST00000281282	ENST00000380995		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
3UTR-intron	ENST00000281282	ENST00000407381		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
3UTR-intron	ENST00000281282	ENST00000355704		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
3UTR-intron	ENST00000281282	ENST00000472791		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
3UTR-intron	ENST00000281282	ENST00000406733		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000337137		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000380995		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000407381		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000355704		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000472791		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000557813	ENST00000406733		ChiTaRS3.1			BQ332213	CGNL1	chr15	57840955	+	TBC1D22A	chr22	47171682	+
intron-intron	ENST00000412882	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000412882	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609369	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000437981	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000596412	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431025	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000430173	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000451969	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000541582	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608616	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000447209	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609161	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000436708	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000431214	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608342	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609314	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000609651	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000340855		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000537071		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000541269		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000422081		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000370441		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000490775		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000370443		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000427113		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
intron-intron	ENST00000608355	ENST00000428056		ChiTaRS3.1			U66053	LINC00893	chrX	148615706	-	IDS	chrX	148571843	+
Frame-shit	ENST00000522793	ENST00000325568		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000534507		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000531965		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000396887		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000529699		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000526464		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000440815		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000529550		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000551122		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000525643		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000528163		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000530890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000444393		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000533097		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000008180		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000396890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000548652		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000530538		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000549213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000552936		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000548476		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000552664		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000552356		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000522793	ENST00000551513		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000382213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000522793	ENST00000548246		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000325568		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000534507		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000531965		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000396887		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000529699		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000231238	ENST00000526464		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000440815		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000529550		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000551122		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000525643		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000231238	ENST00000528163		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000530890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000444393		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000533097		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000231238	ENST00000008180		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000396890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000548652		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000231238	ENST00000530538		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000549213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
In-frame	ENST00000231238	ENST00000552936		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000548476		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000552664		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000552356		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000551513		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000382213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
Frame-shit	ENST00000231238	ENST00000548246		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000325568		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000534507		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000531965		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000396887		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000529699		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000526464		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000440815		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000529550		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000551122		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000525643		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000528163		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000530890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000444393		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000533097		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000008180		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000396890		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000548652		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000530538		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000549213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000552936		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000548476		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000552664		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000552356		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000551513		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000382213		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
3UTR-3CDS	ENST00000520274	ENST00000548246		ChiTaRS3.1			AW380713	TTC1	chr5	159492039	+	IL32	chr16	3119031	-
intron-3CDS	ENST00000333274	ENST00000268182		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-3CDS	ENST00000333274	ENST00000560738		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-intron	ENST00000333274	ENST00000560020		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-3CDS	ENST00000509503	ENST00000268182		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-3CDS	ENST00000509503	ENST00000560738		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-intron	ENST00000509503	ENST00000560020		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-3CDS	ENST00000510359	ENST00000268182		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-3CDS	ENST00000510359	ENST00000560738		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
intron-intron	ENST00000510359	ENST00000560020		ChiTaRS3.1			BF094243	EFNA5	chr5	106880703	+	IQGAP1	chr15	91034581	+
5CDS-intron	ENST00000588240	ENST00000262325		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000588240	ENST00000592545		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000588240	ENST00000538556		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000588240	ENST00000312678		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000588240	ENST00000589344		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000588240	ENST00000537622		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-3UTR	ENST00000588240	ENST00000545922		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000262325		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000592545		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000538556		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000312678		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000589344		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-intron	ENST00000592237	ENST00000537622		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5UTR-3UTR	ENST00000592237	ENST00000545922		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000262325		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000592545		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000538556		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000312678		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000589344		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-intron	ENST00000311979	ENST00000537622		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
5CDS-3UTR	ENST00000311979	ENST00000545922		ChiTaRS3.1			BU178663	TAF15	chr17	34136580	+	AP2B1	chr17	33997875	+
intron-intron	ENST00000439174	ENST00000257821		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000323180		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000418153		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000439174	ENST00000527753		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000257821		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000323180		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000418153		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000541118	ENST00000527753		ChiTaRS3.1			AI580083	GNA13	chr17	63039408	+	PHF21A	chr11	46105874	-
intron-intron	ENST00000357103	ENST00000330978		ChiTaRS3.1			BE706373	ADIPOR2	chr12	1890543	+	BOLA2	chr16	29822049	+
intron-intron	ENST00000544470	ENST00000330978		ChiTaRS3.1			BE706373	ADIPOR2	chr12	1890543	+	BOLA2	chr16	29822049	+
intron-intron	ENST00000573984	ENST00000573984		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000573984	ENST00000575251		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000573984	ENST00000301391		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-intron	ENST00000573984	ENST00000575411		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-intron	ENST00000575251	ENST00000573984		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000575251	ENST00000575251		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000575251	ENST00000301391		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-intron	ENST00000575251	ENST00000575411		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
3UTR-intron	ENST00000301391	ENST00000573984		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
3UTR-3UTR	ENST00000301391	ENST00000575251		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
3UTR-3UTR	ENST00000301391	ENST00000301391		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
3UTR-intron	ENST00000301391	ENST00000575411		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-intron	ENST00000575411	ENST00000573984		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000575411	ENST00000575251		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-3UTR	ENST00000575411	ENST00000301391		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-intron	ENST00000575411	ENST00000575411		ChiTaRS3.1			CA944673	CYB5D2	chr17	4060936	-	CYB5D2	chr17	4060750	+
intron-5UTR	ENST00000393359	ENST00000321153		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
intron-3UTR	ENST00000393359	ENST00000532004		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
intron-5UTR	ENST00000393359	ENST00000530797		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
intron-5UTR	ENST00000258449	ENST00000321153		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
intron-3UTR	ENST00000258449	ENST00000532004		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
intron-5UTR	ENST00000258449	ENST00000530797		ChiTaRS3.1			BC010093	TGFBRAP1	chr2	105889455	-	RPLP2	chr11	810003	+
3UTR-intron	ENST00000306434	ENST00000216951		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
3UTR-intron	ENST00000306434	ENST00000541098		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
3UTR-intron	ENST00000306434	ENST00000451957		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000409017	ENST00000216951		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000409017	ENST00000541098		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000409017	ENST00000451957		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000490878	ENST00000216951		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000490878	ENST00000541098		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
intron-intron	ENST00000490878	ENST00000451957		ChiTaRS3.1			BF746473	MAT2A	chr2	85771560	-	GSS	chr20	33533756	+
3UTR-3UTR	ENST00000504263	ENST00000358161		ChiTaRS3.1			BG055063	PCAT4	chr4	80748689	-	SPTAN1	chr9	131395756	-
3UTR-3UTR	ENST00000504263	ENST00000372739		ChiTaRS3.1			BG055063	PCAT4	chr4	80748689	-	SPTAN1	chr9	131395756	-
3UTR-3UTR	ENST00000504263	ENST00000372731		ChiTaRS3.1			BG055063	PCAT4	chr4	80748689	-	SPTAN1	chr9	131395756	-
3UTR-intron	ENST00000504263	ENST00000475367		ChiTaRS3.1			BG055063	PCAT4	chr4	80748689	-	SPTAN1	chr9	131395756	-
intron-3CDS	ENST00000371712	ENST00000371712		ChiTaRS3.1			CN331953	INPP5E	chr9	139327518	+	INPP5E	chr9	139327019	-
intron-3CDS	ENST00000389327	ENST00000358161		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000389327	ENST00000372739		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000389327	ENST00000372731		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-intron	ENST00000389327	ENST00000475367		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000389328	ENST00000358161		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000389328	ENST00000372739		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000389328	ENST00000372731		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-intron	ENST00000389328	ENST00000475367		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000438773	ENST00000358161		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000438773	ENST00000372739		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000438773	ENST00000372731		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-intron	ENST00000438773	ENST00000475367		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000522504	ENST00000358161		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000522504	ENST00000372739		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-3CDS	ENST00000522504	ENST00000372731		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
intron-intron	ENST00000522504	ENST00000475367		ChiTaRS3.1			BF949933	TRAPPC9	chr8	141105485	+	SPTAN1	chr9	131380275	+
5CDS-intron	ENST00000393829	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000393829	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000546249	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000537728	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000264649	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000585525	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000343619	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
5CDS-intron	ENST00000544137	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000313367		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000431825		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000352860		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000353930		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000396431		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000409069		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000396429		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
intron-intron	ENST00000587797	ENST00000487020		ChiTaRS3.1			BQ325193	ATP6V0A1	chr17	40652824	+	OSBPL3	chr7	24930184	+
In-frame	ENST00000261769	ENST00000270162		ChiTaRS3.1			BG945743	CDH1	chr16	68863567	-	SIK1	chr21	44840935	+
In-frame	ENST00000422392	ENST00000270162		ChiTaRS3.1			BG945743	CDH1	chr16	68863567	-	SIK1	chr21	44840935	+
3UTR-3CDS	ENST00000562836	ENST00000270162		ChiTaRS3.1			BG945743	CDH1	chr16	68863567	-	SIK1	chr21	44840935	+
intron-3UTR	ENST00000272217	ENST00000272217		ChiTaRS3.1			AW294763	ARL8A	chr1	202103387	+	ARL8A	chr1	202102704	+
intron-intron	ENST00000272217	ENST00000486225		ChiTaRS3.1			AW294763	ARL8A	chr1	202103387	+	ARL8A	chr1	202102704	+
intron-3UTR	ENST00000486225	ENST00000272217		ChiTaRS3.1			AW294763	ARL8A	chr1	202103387	+	ARL8A	chr1	202102704	+
intron-intron	ENST00000486225	ENST00000486225		ChiTaRS3.1			AW294763	ARL8A	chr1	202103387	+	ARL8A	chr1	202102704	+
intron-3CDS	ENST00000360284	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000360284	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000360284	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000360284	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000360284	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000360284	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000360284	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000360284	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000545748	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000545748	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000545748	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000545748	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000545748	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000545748	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000545748	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000545748	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000550082	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000550082	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000550082	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000550082	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000550082	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000550082	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000550082	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000550082	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000547206	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000547206	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000547206	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000547206	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000547206	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000547206	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000547206	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000547206	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000243050	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000243050	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000243050	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000243050	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000243050	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000243050	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000243050	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000243050	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394825	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394825	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394825	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394825	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394825	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394825	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394825	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394825	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394824	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394824	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000394824	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394824	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394824	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394824	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394824	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000394824	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000548232	ENST00000360284		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000548232	ENST00000545748		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000548232	ENST00000550082		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000548232	ENST00000547206		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000548232	ENST00000243050		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000548232	ENST00000394825		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000548232	ENST00000394824		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-intron	ENST00000548232	ENST00000548232		ChiTaRS3.1			AV705223	NR4A1	chr12	52450664	+	NR4A1	chr12	52450284	+
intron-3CDS	ENST00000485761	ENST00000309007		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000292385		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000393565		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000393563		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000485761	ENST00000512501		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000309007		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000292385		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000393565		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000393563		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000367036	ENST00000512501		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000309007		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000292385		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000393565		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000393563		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000310833	ENST00000512501		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000309007		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000292385		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000393565		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000393563		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000356522	ENST00000512501		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000309007		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000292385		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000393565		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000393563		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3CDS	ENST00000537704	ENST00000512501		ChiTaRS3.1			AW351463	CD34	chr1	208061080	-	DBN1	chr5	176887485	+
intron-3UTR	ENST00000410059	ENST00000345662		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000410059	ENST00000315285		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000409163	ENST00000345662		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000409163	ENST00000315285		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000393147	ENST00000345662		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000393147	ENST00000315285		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000310323	ENST00000345662		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000310323	ENST00000315285		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000488208	ENST00000345662		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3UTR	ENST00000488208	ENST00000315285		ChiTaRS3.1			H12023	DPP10	chr2	115421957	+	SPAST	chr2	32381362	+
intron-3CDS	ENST00000361654	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000361654	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000361654	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000361654	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000361654	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000545889	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000545889	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000545889	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000545889	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000545889	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000302528	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000302528	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000302528	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000302528	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000302528	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000358808	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000358808	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000358808	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000358808	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000358808	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000537178	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000537178	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000537178	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000537178	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000537178	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540338	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540338	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540338	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000540338	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000540338	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000536634	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000536634	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000536634	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000536634	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000536634	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540539	ENST00000555414		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540539	ENST00000216714		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-3CDS	ENST00000540539	ENST00000398030		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000540539	ENST00000557054		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000540539	ENST00000557365		ChiTaRS3.1			AW867143	CLIP1	chr12	122762720	-	APEX1	chr14	20923840	+
intron-intron	ENST00000302328	ENST00000268616		ChiTaRS3.1			BF591663	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000450244	ENST00000268616		ChiTaRS3.1			BF591663	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000456224	ENST00000268616		ChiTaRS3.1			BF591663	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
intron-intron	ENST00000444237	ENST00000268616		ChiTaRS3.1			BF591663	SCN11A	chr3	38887632	+	ZCCHC14	chr16	87517137	+
3UTR-intron	ENST00000324557	ENST00000311177		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
3UTR-intron	ENST00000324557	ENST00000550387		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000402825	ENST00000311177		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000402825	ENST00000550387		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000359140	ENST00000311177		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000359140	ENST00000550387		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000404464	ENST00000311177		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000404464	ENST00000550387		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000357474	ENST00000311177		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
intron-intron	ENST00000357474	ENST00000550387		ChiTaRS3.1			BF063373	ECE2	chr3	183977294	+	HOXB9	chr17	46702874	+
5CDS-intron	ENST00000373017	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373017	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
3UTR-intron	ENST00000470902	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000540948	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000277480	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000373013	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000571589		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000574045		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000318282		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000572567		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000341243		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000575537		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
5CDS-intron	ENST00000372998	ENST00000573051		ChiTaRS3.1			BU742073	LCN2	chr9	130913963	-	MKL2	chr16	14332896	-
intron-intron	ENST00000419488	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000419488	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000419488	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000354212	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000354212	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000354212	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000522391	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000522391	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000522391	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000536571	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000536571	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000536571	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000535697	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000535697	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000535697	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000517762	ENST00000318631		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000517762	ENST00000431348		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-intron	ENST00000517762	ENST00000463801		ChiTaRS3.1			BE703283	MAGI2	chr7	77756622	-	MAP6D1	chr3	183537338	+
intron-3CDS	ENST00000285667	ENST00000389857		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000285667	ENST00000331194		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000389856		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000553403		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000285667	ENST00000554165		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000544452	ENST00000389857		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000544452	ENST00000331194		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000389856		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000553403		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000544452	ENST00000554165		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000478035	ENST00000389857		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-3CDS	ENST00000478035	ENST00000331194		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000389856		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000553403		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000478035	ENST00000554165		ChiTaRS3.1			AK022593	HSPA13	chr21	15744824	-	CCDC88C	chr14	91745632	-
intron-intron	ENST00000318789	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318789	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000475937	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000493089	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000484350	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000318779	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000491238	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000498215	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000468577	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000318789		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000475937		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000493089		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000484350		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000318779		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000491238		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000498215		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000468577		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-intron	ENST00000472382	ENST00000472382		ChiTaRS3.1			T11883	FOXP1	chr3	71406477	+	FOXP1	chr3	71406372	-
intron-3UTR	ENST00000296511	ENST00000296511		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000296511	ENST00000501272		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000296511	ENST00000515017		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-intron	ENST00000296511	ENST00000509016		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000501272	ENST00000296511		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000501272	ENST00000501272		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000501272	ENST00000515017		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-intron	ENST00000501272	ENST00000509016		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000515017	ENST00000296511		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000515017	ENST00000501272		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000515017	ENST00000515017		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-intron	ENST00000515017	ENST00000509016		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000509016	ENST00000296511		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000509016	ENST00000501272		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3UTR	ENST00000509016	ENST00000515017		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-intron	ENST00000509016	ENST00000509016		ChiTaRS3.1			BF034543	ANXA5	chr4	122589320	+	ANXA5	chr4	122589281	-
intron-3CDS	ENST00000544484	ENST00000262487		ChiTaRS3.1			AK074473	CHD4	chr12	6710224	-	ISM1	chr20	13273023	+
intron-3CDS	ENST00000357008	ENST00000262487		ChiTaRS3.1			AK074473	CHD4	chr12	6710224	-	ISM1	chr20	13273023	+
intron-3CDS	ENST00000309577	ENST00000262487		ChiTaRS3.1			AK074473	CHD4	chr12	6710224	-	ISM1	chr20	13273023	+
intron-3CDS	ENST00000544040	ENST00000262487		ChiTaRS3.1			AK074473	CHD4	chr12	6710224	-	ISM1	chr20	13273023	+
intron-3CDS	ENST00000540960	ENST00000262487		ChiTaRS3.1			AK074473	CHD4	chr12	6710224	-	ISM1	chr20	13273023	+
intron-intron	ENST00000392668	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000525404	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000345075	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000535549	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000526145	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000531611	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000319397	ENST00000390548		ChiTaRS3.1			BF094253	ETS1	chr11	128334286	+	IGHG1	chr14	106037360	+
intron-intron	ENST00000464356	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000348159	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000353795	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000340875	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000368240	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000360595	ENST00000225538		ChiTaRS3.1			BQ368243	MEF2D	chr1	156434503	-	P2RX1	chr17	3802408	+
intron-intron	ENST00000561500	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000561500	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000561500	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000561500	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000561500	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000561500	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379047	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000379047	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000379047	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379047	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379047	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379047	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000320623	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000320623	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000320623	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000320623	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000320623	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000320623	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379046	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000379046	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000379046	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379046	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379046	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000379046	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000439109	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000439109	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000439109	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000439109	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000439109	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000439109	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000564043	ENST00000561500		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000564043	ENST00000379047		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-3UTR	ENST00000564043	ENST00000320623		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000564043	ENST00000379046		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000564043	ENST00000439109		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000564043	ENST00000564043		ChiTaRS3.1			BU189113	NQO1	chr16	69744378	+	NQO1	chr16	69744323	-
intron-intron	ENST00000389153	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000389153	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000608853	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000377617	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000550104	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000542287	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000535949	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000389153		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000608853		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000377617		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000550104		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000542287		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000535949		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000549455	ENST00000549455		ChiTaRS3.1			BF839133	ATXN2	chr12	111991689	-	ATXN2	chr12	111994395	-
intron-intron	ENST00000297156	ENST00000297156		ChiTaRS3.1			CR738213	CAMLG	chr5	134079927	+	CAMLG	chr5	134078863	+
intron-intron	ENST00000297156	ENST00000514518		ChiTaRS3.1			CR738213	CAMLG	chr5	134079927	+	CAMLG	chr5	134078863	+
intron-intron	ENST00000514518	ENST00000297156		ChiTaRS3.1			CR738213	CAMLG	chr5	134079927	+	CAMLG	chr5	134078863	+
intron-intron	ENST00000514518	ENST00000514518		ChiTaRS3.1			CR738213	CAMLG	chr5	134079927	+	CAMLG	chr5	134078863	+
intron-intron	ENST00000482518	ENST00000259119		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000482518	ENST00000426052		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000482518	ENST00000490989		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000482518	ENST00000413427		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-3UTR	ENST00000482518	ENST00000458537		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392054	ENST00000259119		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392054	ENST00000426052		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392054	ENST00000490989		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392054	ENST00000413427		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-3UTR	ENST00000392054	ENST00000458537		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000409462	ENST00000259119		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000409462	ENST00000426052		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000409462	ENST00000490989		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000409462	ENST00000413427		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-3UTR	ENST00000409462	ENST00000458537		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392055	ENST00000259119		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392055	ENST00000426052		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392055	ENST00000490989		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000392055	ENST00000413427		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-3UTR	ENST00000392055	ENST00000458537		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000354069	ENST00000259119		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000354069	ENST00000426052		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000354069	ENST00000490989		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-intron	ENST00000354069	ENST00000413427		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
intron-3UTR	ENST00000354069	ENST00000458537		ChiTaRS3.1			BC020883	PID1	chr2	229972273	-	SKIL	chr3	170114493	+
3UTR-3CDS	ENST00000244061	ENST00000337147		ChiTaRS3.1			BF748483	RNF114	chr20	48569009	+	EZR	chr6	159192304	+
3UTR-3CDS	ENST00000244061	ENST00000367075		ChiTaRS3.1			BF748483	RNF114	chr20	48569009	+	EZR	chr6	159192304	+
3UTR-3CDS	ENST00000244061	ENST00000392177		ChiTaRS3.1			BF748483	RNF114	chr20	48569009	+	EZR	chr6	159192304	+
3UTR-intron	ENST00000244061	ENST00000476189		ChiTaRS3.1			BF748483	RNF114	chr20	48569009	+	EZR	chr6	159192304	+
intron-5UTR	ENST00000368491	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000368491	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000368491	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000368488	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000368488	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000368488	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000360290	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000360290	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000360290	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000392500	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000392500	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
5UTR-5UTR	ENST00000392500	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000419517	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000419517	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000419517	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000472713	ENST00000409469		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000472713	ENST00000602748		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-5UTR	ENST00000472713	ENST00000325222		ChiTaRS3.1			DB140993	CEP85L	chr6	119031197	-	CUL1	chr7	148427054	+
intron-intron	ENST00000252818	ENST00000523698		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000517876		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521450		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000403027		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000524105		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000285896		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000520671		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521583		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000519404		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000252818	ENST00000521402		ChiTaRS3.1			BF063953	JUND	chr19	18391128	+	CNOT8	chr5	154238615	-
intron-intron	ENST00000354817	ENST00000354817		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000527202		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000354817	ENST00000532502		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000354817		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000527202		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000527202	ENST00000532502		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000354817		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000527202		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
intron-intron	ENST00000532502	ENST00000532502		ChiTaRS3.1			BI019383	FAR1	chr11	13695580	+	FAR1	chr11	13692089	+
5CDS-intron	ENST00000547956	ENST00000390548		ChiTaRS3.1			AY533203	CHST11	chr12	104851292	+	IGHG1	chr14	106225927	+
5CDS-intron	ENST00000549260	ENST00000390548		ChiTaRS3.1			AY533203	CHST11	chr12	104851292	+	IGHG1	chr14	106225927	+
5CDS-intron	ENST00000303694	ENST00000390548		ChiTaRS3.1			AY533203	CHST11	chr12	104851292	+	IGHG1	chr14	106225927	+
5CDS-intron	ENST00000546689	ENST00000390548		ChiTaRS3.1			AY533203	CHST11	chr12	104851292	+	IGHG1	chr14	106225927	+
intron-intron	ENST00000550711	ENST00000390548		ChiTaRS3.1			AY533203	CHST11	chr12	104851292	+	IGHG1	chr14	106225927	+
Frame-shit	ENST00000450114	ENST00000382374		ChiTaRS3.1			BE002633	WEE1	chr11	9598115	-	MICU2	chr13	22069398	+
5CDS-5UTR	ENST00000450114	ENST00000479790		ChiTaRS3.1			BE002633	WEE1	chr11	9598115	-	MICU2	chr13	22069398	+
Frame-shit	ENST00000299613	ENST00000382374		ChiTaRS3.1			BE002633	WEE1	chr11	9598115	-	MICU2	chr13	22069398	+
5CDS-5UTR	ENST00000299613	ENST00000479790		ChiTaRS3.1			BE002633	WEE1	chr11	9598115	-	MICU2	chr13	22069398	+
intron-3CDS	ENST00000252996	ENST00000252996		ChiTaRS3.1			BE074753	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000252996	ENST00000609045		ChiTaRS3.1			BE074753	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-3CDS	ENST00000609045	ENST00000252996		ChiTaRS3.1			BE074753	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-intron	ENST00000609045	ENST00000609045		ChiTaRS3.1			BE074753	TAF4	chr20	60551132	+	TAF4	chr20	60574090	-
intron-3CDS	ENST00000225992	ENST00000251595		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-3CDS	ENST00000225992	ENST00000397806		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-3CDS	ENST00000591228	ENST00000251595		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-3CDS	ENST00000591228	ENST00000397806		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-3CDS	ENST00000587006	ENST00000251595		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-3CDS	ENST00000587006	ENST00000397806		ChiTaRS3.1			BP386553	PPY	chr17	42018927	+	HBA2	chr16	223496	+
intron-intron	ENST00000416782	ENST00000416782		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000416782	ENST00000479005		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000416782	ENST00000372945		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000416782	ENST00000372940		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000479005	ENST00000416782		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000479005	ENST00000479005		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000479005	ENST00000372945		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000479005	ENST00000372940		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000372945	ENST00000416782		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000372945	ENST00000479005		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000372945	ENST00000372945		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000372945	ENST00000372940		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000372940	ENST00000416782		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000372940	ENST00000479005		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-5UTR	ENST00000372940	ENST00000372945		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-intron	ENST00000372940	ENST00000372940		ChiTaRS3.1			BU679813	MRPS16	chr10	75010629	+	MRPS16	chr10	75010732	-
intron-3UTR	ENST00000225525	ENST00000345496		ChiTaRS3.1			BC035653	TAX1BP3	chr17	3570628	-	UBE2G2	chr21	46189344	-
intron-intron	ENST00000225525	ENST00000477954		ChiTaRS3.1			BC035653	TAX1BP3	chr17	3570628	-	UBE2G2	chr21	46189344	-
intron-intron	ENST00000225525	ENST00000330942		ChiTaRS3.1			BC035653	TAX1BP3	chr17	3570628	-	UBE2G2	chr21	46189344	-
5CDS-3UTR	ENST00000264360	ENST00000397901		ChiTaRS3.1			BG008253	PCDH10	chr4	134071750	-	CHMP1A	chr16	89712392	-
5CDS-3UTR	ENST00000264360	ENST00000253475		ChiTaRS3.1			BG008253	PCDH10	chr4	134071750	-	CHMP1A	chr16	89712392	-
5CDS-3UTR	ENST00000264360	ENST00000535997		ChiTaRS3.1			BG008253	PCDH10	chr4	134071750	-	CHMP1A	chr16	89712392	-
5CDS-3UTR	ENST00000264360	ENST00000550102		ChiTaRS3.1			BG008253	PCDH10	chr4	134071750	-	CHMP1A	chr16	89712392	-
5CDS-intron	ENST00000264360	ENST00000547614		ChiTaRS3.1			BG008253	PCDH10	chr4	134071750	-	CHMP1A	chr16	89712392	-
3UTR-intron	ENST00000321297	ENST00000369617		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
3UTR-intron	ENST00000321297	ENST00000307546		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
3UTR-intron	ENST00000321297	ENST00000369615		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
3UTR-intron	ENST00000321297	ENST00000369611		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
3UTR-intron	ENST00000321297	ENST00000486456		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000534905	ENST00000369617		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000534905	ENST00000307546		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000534905	ENST00000369615		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000534905	ENST00000369611		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000534905	ENST00000486456		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000451353	ENST00000369617		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000451353	ENST00000307546		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000451353	ENST00000369615		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000451353	ENST00000369611		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000451353	ENST00000486456		ChiTaRS3.1			BG981723	ATG16L2	chr11	72540629	+	MAGI3	chr1	114159170	+
intron-intron	ENST00000396153	ENST00000330430		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000371374		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000306764		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000396153	ENST00000405162		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000330430		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000371374		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000306764		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000371778	ENST00000405162		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000330430		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000371374		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000306764		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000545823	ENST00000405162		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000330430		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000371374		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000306764		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000472808	ENST00000405162		ChiTaRS3.1			BF959003	FAF1	chr1	50923312	+	RCAN2	chr6	46314918	+
intron-intron	ENST00000258494	ENST00000335658		ChiTaRS3.1			BG150443	ALDH1L2	chr12	105415637	+	DPPA4	chr3	109047067	+
intron-intron	ENST00000258494	ENST00000478791		ChiTaRS3.1			BG150443	ALDH1L2	chr12	105415637	+	DPPA4	chr3	109047067	+
intron-intron	ENST00000424857	ENST00000335658		ChiTaRS3.1			BG150443	ALDH1L2	chr12	105415637	+	DPPA4	chr3	109047067	+
intron-intron	ENST00000424857	ENST00000478791		ChiTaRS3.1			BG150443	ALDH1L2	chr12	105415637	+	DPPA4	chr3	109047067	+
intron-3CDS	ENST00000434178	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000434178	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000434178	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000434178	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000434178	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000265052	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000265052	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000265052	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000265052	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000265052	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398104	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398104	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398104	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398104	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000398104	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000453507	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000453507	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000453507	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000453507	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000453507	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000476682	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000476682	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000476682	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000476682	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000476682	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398101	ENST00000391976		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398101	ENST00000310931		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398101	ENST00000391975		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-3CDS	ENST00000398101	ENST00000427183		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000398101	ENST00000476807		ChiTaRS3.1			BI014363	MGLL	chr3	127509373	+	HDLBP	chr2	242169104	-
intron-intron	ENST00000577886	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000577886	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000577886	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000577886	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000577886	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000577886	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000416464	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000578237	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000336708	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000579219	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000577886		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000416464		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000578237		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000336708		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000579219		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-intron	ENST00000581224	ENST00000581224		ChiTaRS3.1			BF798533	TRIM16	chr17	15556116	+	TRIM16	chr17	15556199	-
intron-3UTR	ENST00000252699	ENST00000534336		ChiTaRS3.1			BF767733	ACTN4	chr19	39172161	-	MALAT1	chr11	65271270	+
intron-3UTR	ENST00000424234	ENST00000534336		ChiTaRS3.1			BF767733	ACTN4	chr19	39172161	-	MALAT1	chr11	65271270	+
intron-3UTR	ENST00000390009	ENST00000534336		ChiTaRS3.1			BF767733	ACTN4	chr19	39172161	-	MALAT1	chr11	65271270	+
intron-3UTR	ENST00000497637	ENST00000534336		ChiTaRS3.1			BF767733	ACTN4	chr19	39172161	-	MALAT1	chr11	65271270	+
intron-intron	ENST00000366595	ENST00000518322		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000366595	ENST00000522324		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000366595	ENST00000423990		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000366595	ENST00000517718		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000366595	ENST00000519679		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000366595	ENST00000520363		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000518322		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000522324		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000423990		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000517718		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000519679		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000264187	ENST00000520363		ChiTaRS3.1			BU743023	NID1	chr1	236197498	+	FAM92A1	chr8	94720957	-
intron-intron	ENST00000306010	ENST00000369219		ChiTaRS3.1			BF996063	MGMT	chr10	131395275	-	NBPF14	chr1	145112817	+
intron-intron	ENST00000462672	ENST00000369219		ChiTaRS3.1			BF996063	MGMT	chr10	131395275	-	NBPF14	chr1	145112817	+
intron-3CDS	ENST00000273308	ENST00000586895		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000358666		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000273308	ENST00000590068		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000589960		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000273308	ENST00000593087		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000586895		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000358666		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3CDS	ENST00000551720	ENST00000590068		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000589960		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
intron-3UTR	ENST00000551720	ENST00000593087		ChiTaRS3.1			BM757953	CNPY2	chr12	56704325	-	UBL5	chr19	9940658	+
3UTR-3UTR	ENST00000321867	ENST00000321867		ChiTaRS3.1			BG820543	ULK1	chr12	132406830	-	ULK1	chr12	132406896	+
3UTR-intron	ENST00000321867	ENST00000540647		ChiTaRS3.1			BG820543	ULK1	chr12	132406830	-	ULK1	chr12	132406896	+
intron-3UTR	ENST00000540647	ENST00000321867		ChiTaRS3.1			BG820543	ULK1	chr12	132406830	-	ULK1	chr12	132406896	+
intron-intron	ENST00000540647	ENST00000540647		ChiTaRS3.1			BG820543	ULK1	chr12	132406830	-	ULK1	chr12	132406896	+
Frame-shit	ENST00000557943	ENST00000255390		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000557943	ENST00000577427		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
5CDS-5UTR	ENST00000557943	ENST00000582053		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000433983	ENST00000255390		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000433983	ENST00000577427		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
5CDS-5UTR	ENST00000433983	ENST00000582053		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000560726	ENST00000255390		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000560726	ENST00000577427		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
5CDS-5UTR	ENST00000560726	ENST00000582053		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000559602	ENST00000255390		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
Frame-shit	ENST00000559602	ENST00000577427		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
5CDS-5UTR	ENST00000559602	ENST00000582053		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
intron-3CDS	ENST00000560816	ENST00000255390		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
intron-3CDS	ENST00000560816	ENST00000577427		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
intron-5UTR	ENST00000560816	ENST00000582053		ChiTaRS3.1			AL135593	ETFA	chr15	76523674	-	SCO1	chr17	10596281	-
intron-intron	ENST00000329957	ENST00000329957		ChiTaRS3.1			BX537373	MOB2	chr11	1494475	+	MOB2	chr11	1494666	-
intron-intron	ENST00000329957	ENST00000526462		ChiTaRS3.1			BX537373	MOB2	chr11	1494475	+	MOB2	chr11	1494666	-
intron-intron	ENST00000526462	ENST00000329957		ChiTaRS3.1			BX537373	MOB2	chr11	1494475	+	MOB2	chr11	1494666	-
intron-intron	ENST00000526462	ENST00000526462		ChiTaRS3.1			BX537373	MOB2	chr11	1494475	+	MOB2	chr11	1494666	-
intron-intron	ENST00000296585	ENST00000304425		ChiTaRS3.1			BF913923	ITGA2	chr5	52285618	+	MIR31HG	chr9	21499156	+
intron-intron	ENST00000340437	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000340437	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000394888	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000439958	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000494016	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000448745	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000539406		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000222792		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000435288		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000495789		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000539389		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000546235		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000409041		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000424025		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000439711		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000421775		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000541963	ENST00000410098		ChiTaRS3.1			BF091403	CPSF7	chr11	61187511	+	CHN2	chr7	29259028	+
intron-intron	ENST00000354891	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000354891	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000322350	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000336740	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397202	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000397210	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000506135	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000513000		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000509777		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000262992		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000308502		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000508116		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000507861		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000506217		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000514476	ENST00000508084		ChiTaRS3.1			BG952183	EGFLAM	chr5	38320667	-	INPP4B	chr4	143072468	+
intron-intron	ENST00000377026	ENST00000540582		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000377026	ENST00000374491		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000377026	ENST00000374492		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000377026	ENST00000541621		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000377026	ENST00000542871		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000398425	ENST00000540582		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000398425	ENST00000374491		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000398425	ENST00000374492		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000398425	ENST00000541621		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000398425	ENST00000542871		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000432543	ENST00000540582		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000432543	ENST00000374491		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000432543	ENST00000374492		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000432543	ENST00000541621		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000432543	ENST00000542871		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000472855	ENST00000540582		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000472855	ENST00000374491		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000472855	ENST00000374492		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000472855	ENST00000541621		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000472855	ENST00000542871		ChiTaRS3.1			BE938093	NAPB	chr20	23356179	+	EDEM2	chr20	33703454	-
intron-intron	ENST00000397063	ENST00000397063		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397063	ENST00000397062		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397063	ENST00000446151		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397063	ENST00000464747		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397063	ENST00000423513		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397062	ENST00000397063		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397062	ENST00000397062		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397062	ENST00000446151		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397062	ENST00000464747		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000397062	ENST00000423513		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000446151	ENST00000397063		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000446151	ENST00000397062		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000446151	ENST00000446151		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000446151	ENST00000464747		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000446151	ENST00000423513		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000464747	ENST00000397063		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000464747	ENST00000397062		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000464747	ENST00000446151		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000464747	ENST00000464747		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000464747	ENST00000423513		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000423513	ENST00000397063		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000423513	ENST00000397062		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000423513	ENST00000446151		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000423513	ENST00000464747		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000423513	ENST00000423513		ChiTaRS3.1			DB348953	NFE2L2	chr2	178107880	+	NFE2L2	chr2	178107120	+
intron-intron	ENST00000371927	ENST00000371927		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371927	ENST00000371926		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371927	ENST00000461650		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371927	ENST00000371924		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371927	ENST00000371922		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371926	ENST00000371927		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371926	ENST00000371926		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371926	ENST00000461650		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371926	ENST00000371924		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371926	ENST00000371922		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000461650	ENST00000371927		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000461650	ENST00000371926		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000461650	ENST00000461650		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000461650	ENST00000371924		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000461650	ENST00000371922		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371924	ENST00000371927		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371924	ENST00000371926		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371924	ENST00000461650		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371924	ENST00000371924		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371924	ENST00000371922		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371922	ENST00000371927		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371922	ENST00000371926		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371922	ENST00000461650		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371922	ENST00000371924		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-intron	ENST00000371922	ENST00000371922		ChiTaRS3.1			BE834613	STAMBPL1	chr10	90707746	+	STAMBPL1	chr10	90707418	-
intron-3UTR	ENST00000252244	ENST00000556029		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-intron	ENST00000252244	ENST00000343315		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-intron	ENST00000252244	ENST00000266732		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-intron	ENST00000252244	ENST00000393053		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-intron	ENST00000252244	ENST00000261210		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-intron	ENST00000252244	ENST00000548223		ChiTaRS3.1			AJ293393	KRT1	chr12	53068614	+	TMPO	chr12	98943953	-
intron-3CDS	ENST00000274542	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000274542	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000274542	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000274542	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000519865	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000519865	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000519865	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000519865	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000424310	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000424310	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000424310	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000424310	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000521606	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000521606	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000521606	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000521606	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000518802	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000518802	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000518802	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000518802	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000520638	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000520638	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000520638	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000520638	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000518284	ENST00000374332		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-3CDS	ENST00000518284	ENST00000263979		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000518284	ENST00000473891		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000518284	ENST00000374329		ChiTaRS3.1			AF318353	RNF145	chr5	158624266	+	MAN1C1	chr1	25944341	+
intron-intron	ENST00000435880	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000435880	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457076	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413436	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418564	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415222	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594376	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000456161	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419963	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599673	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000418308	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596028	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601431	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000452431	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000423402	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000411429	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000420309	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000434781	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415742	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000457770	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000419542	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596259	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000598586	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416395	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000366234	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000599427	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000597318	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425333	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000425601	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000429599	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000449178	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458686	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421843	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000432604	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000421255	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000422515	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413069	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444410	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000458698	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000603347	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000604346	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000413791	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416506	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439670	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000442040	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609543	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601396	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601494	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000602091	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596573	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000594548	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000600002	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000601395	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000595459	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437456	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000416068	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000444320	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000415060	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000596665	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000439892	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000608964	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000609075	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000437019	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000435880		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000457076		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000413436		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000418564		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000415222		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000594376		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000456161		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000419963		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000599673		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000418308		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000596028		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000601431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000452431		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000423402		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000411429		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000420309		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000434781		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000415742		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000457770		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000419542		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000596259		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000598586		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000416395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000366234		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000599427		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000597318		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000425333		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000425601		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000429599		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000449178		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000458686		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000421843		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000432604		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000421255		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000422515		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000413069		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000444410		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000458698		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000603347		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000604346		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000413791		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000416506		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000439670		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000442040		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000609543		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000601396		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000601494		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000602091		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000596573		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000594548		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000600002		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000601395		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000595459		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000437456		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000416068		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000444320		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000415060		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000596665		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000439892		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000608964		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000609075		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000437019		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
intron-intron	ENST00000610168	ENST00000610168		ChiTaRS3.1			BQ082423	PCBP1-AS1	chr2	70263930	-	PCBP1-AS1	chr2	70266114	-
In-frame	ENST00000312397	ENST00000266041		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
In-frame	ENST00000312397	ENST00000346281		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
In-frame	ENST00000312397	ENST00000485816		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
In-frame	ENST00000312397	ENST00000406595		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
In-frame	ENST00000312397	ENST00000434759		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
5CDS-intron	ENST00000312397	ENST00000467462		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-3CDS	ENST00000528573	ENST00000266041		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-3CDS	ENST00000528573	ENST00000346281		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-3CDS	ENST00000528573	ENST00000485816		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-3CDS	ENST00000528573	ENST00000406595		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-3CDS	ENST00000528573	ENST00000434759		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-intron	ENST00000528573	ENST00000467462		ChiTaRS3.1			AI133253	SART1	chr11	65746099	-	ITIH4	chr3	52859925	-
intron-intron	ENST00000560302	ENST00000553891		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560302	ENST00000318876		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560302	ENST00000556143		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560302	ENST00000394207		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560302	ENST00000555072		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560302	ENST00000554145		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000553891		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000318876		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000556143		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000394207		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000555072		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394518	ENST00000554145		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000553891		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000318876		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000556143		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000394207		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000555072		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000361243	ENST00000554145		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000553891		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000318876		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000556143		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000394207		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000555072		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000560579	ENST00000554145		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000553891		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000318876		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000556143		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000394207		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000555072		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-intron	ENST00000394510	ENST00000554145		ChiTaRS3.1			N81203	AKAP13	chr15	86135267	+	ZFYVE1	chr14	73436160	+
intron-3UTR	ENST00000445470	ENST00000445470		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000445470	ENST00000222482		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000445470	ENST00000493259		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000222482	ENST00000445470		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000222482	ENST00000222482		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000222482	ENST00000493259		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000493259	ENST00000445470		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000493259	ENST00000222482		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-3UTR	ENST00000493259	ENST00000493259		ChiTaRS3.1			BF738633	CPA4	chr7	129946189	-	CPA4	chr7	129962655	-
intron-intron	ENST00000357575	ENST00000357575		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000357575	ENST00000397778		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000357575	ENST00000409073		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000357575	ENST00000590381		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000357575	ENST00000590895		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000397778	ENST00000357575		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000397778	ENST00000397778		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000397778	ENST00000409073		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000397778	ENST00000590381		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000397778	ENST00000590895		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000409073	ENST00000357575		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000409073	ENST00000397778		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000409073	ENST00000409073		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000409073	ENST00000590381		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000409073	ENST00000590895		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590381	ENST00000357575		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590381	ENST00000397778		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590381	ENST00000409073		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590381	ENST00000590381		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590381	ENST00000590895		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590895	ENST00000357575		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590895	ENST00000397778		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590895	ENST00000409073		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590895	ENST00000590381		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-intron	ENST00000590895	ENST00000590895		ChiTaRS3.1			BU952603	PQLC1	chr18	77664738	-	PQLC1	chr18	77665716	-
intron-5UTR	ENST00000242365	ENST00000381140		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-intron	ENST00000242365	ENST00000470606		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-5UTR	ENST00000440172	ENST00000381140		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-intron	ENST00000440172	ENST00000470606		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-5UTR	ENST00000422774	ENST00000381140		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-intron	ENST00000422774	ENST00000470606		ChiTaRS3.1			BC013363	KIAA1549	chr7	138604136	+	GTF3A	chr13	27998782	+
intron-3CDS	ENST00000398514	ENST00000394003		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000361874		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000407639		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000409438		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000409240		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000409868		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000398514	ENST00000409567		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-intron	ENST00000398514	ENST00000495643		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000394003		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000361874		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000407639		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000409438		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000409240		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000409868		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000343218	ENST00000409567		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-intron	ENST00000343218	ENST00000495643		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000394003		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000361874		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000407639		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000409438		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000409240		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000409868		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000534907	ENST00000409567		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-intron	ENST00000534907	ENST00000495643		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000394003		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000361874		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000407639		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000409438		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000409240		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000409868		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-3CDS	ENST00000504965	ENST00000409567		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
intron-intron	ENST00000504965	ENST00000495643		ChiTaRS3.1			AI669553	DPYSL3	chr5	146770492	+	DCTN1	chr2	74596589	+
In-frame	ENST00000535458	ENST00000535458		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000535458	ENST00000290158		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000535458	ENST00000540627		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000535458	ENST00000537679		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
5CDS-intron	ENST00000535458	ENST00000577918		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000290158	ENST00000535458		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000290158	ENST00000290158		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000290158	ENST00000540627		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000290158	ENST00000537679		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
5CDS-intron	ENST00000290158	ENST00000577918		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000540627	ENST00000535458		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000540627	ENST00000290158		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000540627	ENST00000540627		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000540627	ENST00000537679		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
5CDS-intron	ENST00000540627	ENST00000577918		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000537679	ENST00000535458		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000537679	ENST00000290158		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000537679	ENST00000540627		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
In-frame	ENST00000537679	ENST00000537679		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
5CDS-intron	ENST00000537679	ENST00000577918		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
intron-3CDS	ENST00000577918	ENST00000535458		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
intron-3CDS	ENST00000577918	ENST00000290158		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
intron-3CDS	ENST00000577918	ENST00000540627		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
intron-3CDS	ENST00000577918	ENST00000537679		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
intron-intron	ENST00000577918	ENST00000577918		ChiTaRS3.1			BQ212023	KPNB1	chr17	45750500	-	KPNB1	chr17	45752078	+
5CDS-intron	ENST00000538487	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000538487	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000538487	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000538487	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000538487	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374181	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374181	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374181	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374181	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374181	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374177	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374177	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374177	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374177	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
5CDS-intron	ENST00000374177	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000544773	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000544773	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000544773	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000544773	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000544773	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000545715	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000545715	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000545715	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000545715	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000545715	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000535756	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000535756	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000535756	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000535756	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000535756	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000609222	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000609222	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000609222	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000609222	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000609222	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000455714	ENST00000273666		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000455714	ENST00000471454		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000455714	ENST00000472879		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000455714	ENST00000497029		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000455714	ENST00000492541		ChiTaRS3.1			CK002943	GRM4	chr6	33989628	-	STXBP5L	chr3	120848266	+
intron-intron	ENST00000359015	ENST00000359015		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000359015	ENST00000355845		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000359015	ENST00000463140		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000355845	ENST00000359015		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000355845	ENST00000355845		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000355845	ENST00000463140		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000463140	ENST00000359015		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000463140	ENST00000355845		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000463140	ENST00000463140		ChiTaRS3.1			BF960533	MAP3K5	chr6	137041728	+	MAP3K5	chr6	137015278	+
intron-intron	ENST00000384994	ENST00000384994		ChiTaRS3.1			AA746913	NEAT1	chr11	65193408	+	NEAT1	chr11	65193493	-
intron-intron	ENST00000306177	ENST00000344691		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000325074		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000437180		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000300305		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000399240		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000486278		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000494829		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000306177	ENST00000358356		ChiTaRS3.1			FR727327	USP42	chr7	6151080	+	RUNX1	chr21	36167584	-
intron-intron	ENST00000534358	ENST00000252674		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000534358	ENST00000585588		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000389506	ENST00000252674		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000389506	ENST00000585588		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000354520	ENST00000252674		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000354520	ENST00000585588		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000420751	ENST00000252674		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000420751	ENST00000585588		ChiTaRS3.1			AM949724	KMT2A	chr11	118359131	+	MLLT1	chr19	6279120	-
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			JQ425241	BCR	chr22	23633710	+	ABL1	chr9	133674522	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			JQ425241	BCR	chr22	23633710	+	ABL1	chr9	133674522	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			JQ425241	BCR	chr22	23633710	+	ABL1	chr9	133674522	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			JQ425241	BCR	chr22	23633710	+	ABL1	chr9	133674522	+
intron-3CDS	ENST00000253408	ENST00000253408		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000253408	ENST00000588735		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000253408	ENST00000435360		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000253408	ENST00000586793		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-5UTR	ENST00000253408	ENST00000591327		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-3CDS	ENST00000588735	ENST00000253408		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000588735	ENST00000588735		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000588735	ENST00000435360		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000588735	ENST00000586793		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-5UTR	ENST00000588735	ENST00000591327		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-3CDS	ENST00000435360	ENST00000253408		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000435360	ENST00000588735		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000435360	ENST00000435360		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000435360	ENST00000586793		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-5UTR	ENST00000435360	ENST00000591327		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-3CDS	ENST00000586793	ENST00000253408		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000586793	ENST00000588735		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000586793	ENST00000435360		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000586793	ENST00000586793		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-5UTR	ENST00000586793	ENST00000591327		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-3CDS	ENST00000591327	ENST00000253408		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000591327	ENST00000588735		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000591327	ENST00000435360		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-intron	ENST00000591327	ENST00000586793		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
intron-5UTR	ENST00000591327	ENST00000591327		ChiTaRS3.1			CB153203	GFAP	chr17	42984597	-	GFAP	chr17	42992613	-
5CDS-5UTR	ENST00000300213	ENST00000359904		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000300213	ENST00000580753		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000300213	ENST00000392720		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000300213	ENST00000359783		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000300213	ENST00000577866		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000300213	ENST00000585050		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000300213	ENST00000577985		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000300213	ENST00000577273		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000356633	ENST00000359904		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000356633	ENST00000580753		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000356633	ENST00000392720		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000356633	ENST00000359783		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000356633	ENST00000577866		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-5UTR	ENST00000356633	ENST00000585050		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000356633	ENST00000577985		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
5CDS-intron	ENST00000356633	ENST00000577273		ChiTaRS3.1			BI029353	CCNDBP1	chr15	43483783	+	AMZ2	chr17	66244673	-
intron-intron	ENST00000369927	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
intron-3UTR	ENST00000369927	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000346249	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000346249	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000348257	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000348257	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000352482	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000352482	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000358548	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000358548	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000351424	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000351424	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-intron	ENST00000217121	ENST00000369927		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000346249		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000348257		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000352482		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000358548		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000351424		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
3UTR-3UTR	ENST00000217121	ENST00000217121		ChiTaRS3.1			BF815403	TPD52L2	chr20	62522410	-	TPD52L2	chr20	62522737	-
5CDS-intron	ENST00000528416	ENST00000312397		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000528416	ENST00000528573		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000415073	ENST00000312397		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000415073	ENST00000528573		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000252268	ENST00000312397		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
5CDS-intron	ENST00000252268	ENST00000528573		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
3UTR-intron	ENST00000532264	ENST00000312397		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
3UTR-intron	ENST00000532264	ENST00000528573		ChiTaRS3.1			AK056223	DPF2	chr11	65101389	+	SART1	chr11	65744362	-
intron-intron	ENST00000335742	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000335742	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000335742	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000335742	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000335742	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000335742	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000261509	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000505667	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000333488	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000512127	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000335742		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000261509		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000505667		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000333488		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000512127		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000507735	ENST00000507735		ChiTaRS3.1			BF990953	PALLD	chr4	169702291	-	PALLD	chr4	169702213	+
intron-intron	ENST00000327283	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000327283	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000327283	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000327283	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000327283	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591115	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591115	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591115	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000591115	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591115	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000353319	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000353319	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000353319	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000353319	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000353319	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000309660	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000309660	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000309660	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000309660	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000309660	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000589086	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000589086	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000589086	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000589086	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000589086	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591497	ENST00000360453		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591497	ENST00000394320		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591497	ENST00000461780		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-3UTR	ENST00000591497	ENST00000309241		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000591497	ENST00000403750		ChiTaRS3.1			BF370483	PTPN2	chr18	12833496	-	PPARGC1B	chr5	149230758	+
intron-intron	ENST00000513376	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000513376	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000205214	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000434343	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000451613	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000602986	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000502617	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000513376		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000205214		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000434343		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000451613		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000602986		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000502617		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
intron-intron	ENST00000510762	ENST00000510762		ChiTaRS3.1			AA731353	AASDH	chr4	57252172	+	AASDH	chr4	57249807	+
5UTR-3CDS	ENST00000263238	ENST00000274849		ChiTaRS3.1			BG479983	ACTR3	chr2	114647733	-	ABT1	chr6	26597228	+
5UTR-3CDS	ENST00000536059	ENST00000274849		ChiTaRS3.1			BG479983	ACTR3	chr2	114647733	-	ABT1	chr6	26597228	+
intron-3CDS	ENST00000535589	ENST00000274849		ChiTaRS3.1			BG479983	ACTR3	chr2	114647733	-	ABT1	chr6	26597228	+
intron-intron	ENST00000547302	ENST00000355904		ChiTaRS3.1			AI354403	RNASEK-C17orf49	chr17	6917708	+	GTF2E2	chr8	30438064	+
intron-intron	ENST00000547302	ENST00000522833		ChiTaRS3.1			AI354403	RNASEK-C17orf49	chr17	6917708	+	GTF2E2	chr8	30438064	+
In-frame	ENST00000361682	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000361682	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000361682	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000361682	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000361682	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000361682	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000361682	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403184	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000403184	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403184	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403184	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403184	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403184	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000403184	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403710	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000403710	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403710	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403710	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403710	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000403710	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000403710	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000407537	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000407537	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000407537	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000407537	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000407537	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000407537	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000407537	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000406520	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000406520	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000406520	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000406520	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000406520	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000406520	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000406520	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000449653	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
Frame-shit	ENST00000449653	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000449653	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000449653	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000449653	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
In-frame	ENST00000449653	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
5CDS-3UTR	ENST00000449653	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000361682		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000403184		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000403710		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000407537		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000406520		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3CDS	ENST00000493893	ENST00000449653		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3UTR	ENST00000493893	ENST00000493893		ChiTaRS3.1			AI298713	COMT	chr22	19951222	-	COMT	chr22	19951702	+
3UTR-3UTR	ENST00000302754	ENST00000401084		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000264203		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000375142		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000433834		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000264202		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-intron	ENST00000302754	ENST00000482808		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
3UTR-3UTR	ENST00000302754	ENST00000375144		ChiTaRS3.1			BI712483	JUNB	chr19	12903983	-	CAPZB	chr1	19665694	+
intron-3CDS	ENST00000322723	ENST00000296440		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-3CDS	ENST00000322723	ENST00000358459		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-3CDS	ENST00000322723	ENST00000358536		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-3CDS	ENST00000322723	ENST00000448774		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-3CDS	ENST00000322723	ENST00000456774		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-intron	ENST00000322723	ENST00000465117		ChiTaRS3.1			BI042033	NCL	chr2	232319949	+	PLXNB1	chr3	48445976	+
intron-3UTR	ENST00000330978	ENST00000319394		ChiTaRS3.1			BQ022953	BOLA2	chr16	29999660	-	WDTC1	chr1	27632972	-
intron-3UTR	ENST00000330978	ENST00000361771		ChiTaRS3.1			BQ022953	BOLA2	chr16	29999660	-	WDTC1	chr1	27632972	-
intron-intron	ENST00000322313	ENST00000231948		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000322313	ENST00000432408		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000393006	ENST00000231948		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000393006	ENST00000432408		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000409658	ENST00000231948		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000409658	ENST00000432408		ChiTaRS3.1			BE061083	WDR33	chr2	128517588	-	CRBN	chr3	3197753	-
intron-intron	ENST00000261024	ENST00000368759		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-intron	ENST00000261024	ENST00000278100		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-3UTR	ENST00000261024	ENST00000429863		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-3UTR	ENST00000261024	ENST00000299130		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-intron	ENST00000261024	ENST00000478798		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-intron	ENST00000418714	ENST00000368759		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-intron	ENST00000418714	ENST00000278100		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-3UTR	ENST00000418714	ENST00000429863		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-3UTR	ENST00000418714	ENST00000299130		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
intron-intron	ENST00000418714	ENST00000478798		ChiTaRS3.1			BU676833	SLC40A1	chr2	190426715	+	BCCIP	chr10	127530449	-
In-frame	ENST00000367576	ENST00000367576		ChiTaRS3.1			AY326463	LTV1	chr6	144165698	-	LTV1	chr6	144171286	+
intron-5UTR	ENST00000369582	ENST00000494188		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-5UTR	ENST00000369582	ENST00000409892		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-5UTR	ENST00000369582	ENST00000409784		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-5UTR	ENST00000369582	ENST00000398529		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-5UTR	ENST00000369582	ENST00000409751		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-intron	ENST00000369582	ENST00000260638		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-5UTR	ENST00000369582	ENST00000356214		ChiTaRS3.1			C19023	CGA	chr6	87795292	+	RAB1A	chr2	65357175	-
intron-3UTR	ENST00000302102	ENST00000502976		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000422453		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000451728		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000446936		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000500450		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000504813		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000302102	ENST00000441626		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000502976		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000422453		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000451728		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000446936		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000500450		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000504813		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000545399	ENST00000441626		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000502976		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000422453		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000451728		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000446936		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000500450		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000504813		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000543770	ENST00000441626		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000502976		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000422453		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000451728		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000446936		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000500450		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000504813		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000602133	ENST00000441626		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000502976		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000422453		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000451728		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000446936		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000500450		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000504813		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3UTR	ENST00000468774	ENST00000441626		ChiTaRS3.1			AV733123	ATP1A3	chr19	42474365	+	CNBP	chr3	128889023	-
intron-3CDS	ENST00000374316	ENST00000250113		ChiTaRS3.1			BF954113	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-intron	ENST00000374316	ENST00000573057		ChiTaRS3.1			BF954113	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-3CDS	ENST00000605930	ENST00000250113		ChiTaRS3.1			BF954113	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-intron	ENST00000605930	ENST00000573057		ChiTaRS3.1			BF954113	ITPR3	chr6	33658051	-	FXR2	chr17	7504801	-
intron-intron	ENST00000320580	ENST00000449802		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
intron-intron	ENST00000320580	ENST00000478884		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
intron-intron	ENST00000529757	ENST00000449802		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
intron-intron	ENST00000529757	ENST00000478884		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
intron-intron	ENST00000524815	ENST00000449802		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
intron-intron	ENST00000524815	ENST00000478884		ChiTaRS3.1			AK098493	PACS1	chr11	65898182	+	NBEAL1	chr2	204055728	+
3UTR-intron	ENST00000337231	ENST00000244137		ChiTaRS3.1			BM669783	CDR2L	chr17	73001754	-	PEPD	chr19	33949259	-
3UTR-intron	ENST00000337231	ENST00000397032		ChiTaRS3.1			BM669783	CDR2L	chr17	73001754	-	PEPD	chr19	33949259	-
3UTR-intron	ENST00000337231	ENST00000436370		ChiTaRS3.1			BM669783	CDR2L	chr17	73001754	-	PEPD	chr19	33949259	-
3UTR-intron	ENST00000337231	ENST00000591968		ChiTaRS3.1			BM669783	CDR2L	chr17	73001754	-	PEPD	chr19	33949259	-
intron-intron	ENST00000369489	ENST00000369489		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000369489	ENST00000457047		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000369489	ENST00000369487		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000457047	ENST00000369489		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000457047	ENST00000457047		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000457047	ENST00000369487		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000369487	ENST00000369489		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000369487	ENST00000457047		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
intron-intron	ENST00000369487	ENST00000369487		ChiTaRS3.1			BU680103	CD58	chr1	117063191	+	CD58	chr1	117063559	-
3UTR-3UTR	ENST00000354429	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-5UTR	ENST00000354429	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000354429	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-3UTR	ENST00000574255	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-5UTR	ENST00000574255	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-3UTR	ENST00000574255	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000356683	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-5UTR	ENST00000356683	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000356683	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000396627	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-5UTR	ENST00000396627	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000396627	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000574993	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-5UTR	ENST00000574993	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000574993	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000396628	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-5UTR	ENST00000396628	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
3UTR-3UTR	ENST00000396628	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-3UTR	ENST00000573657	ENST00000400520		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-5UTR	ENST00000573657	ENST00000496748		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-3UTR	ENST00000573657	ENST00000375111		ChiTaRS3.1			BG950573	ELP5	chr17	7163206	+	PLA2G2A	chr1	20302146	+
intron-3UTR	ENST00000455809	ENST00000311481		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-intron	ENST00000455809	ENST00000527397		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-3UTR	ENST00000273037	ENST00000311481		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-intron	ENST00000273037	ENST00000527397		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-3UTR	ENST00000444133	ENST00000311481		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-intron	ENST00000444133	ENST00000527397		ChiTaRS3.1			AK093703	TAMM41	chr3	11869927	-	RAB1B	chr11	66044823	+
intron-intron	ENST00000336470	ENST00000336470		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000336470	ENST00000360845		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000336470	ENST00000489691		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000360845	ENST00000336470		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000360845	ENST00000360845		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000360845	ENST00000489691		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000489691	ENST00000336470		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000489691	ENST00000360845		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000489691	ENST00000489691		ChiTaRS3.1			BE859073	GNL3L	chrX	54588829	-	GNL3L	chrX	54590496	-
intron-intron	ENST00000205061	ENST00000267101		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000205061	ENST00000450146		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000205061	ENST00000415288		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000205061	ENST00000553131		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000205061	ENST00000411731		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000205061	ENST00000549832		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000267101		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000450146		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000415288		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000553131		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000411731		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000422840	ENST00000549832		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000267101		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000450146		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000415288		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000553131		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000411731		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
intron-intron	ENST00000447066	ENST00000549832		ChiTaRS3.1			BG983173	GLG1	chr16	74496469	-	ERBB3	chr12	56482009	-
5CDS-intron	ENST00000361417	ENST00000366760		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000361417	ENST00000315781		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000361417	ENST00000366759		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000361417	ENST00000480897		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000356063	ENST00000366760		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000356063	ENST00000315781		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000356063	ENST00000366759		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000356063	ENST00000480897		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
3UTR-intron	ENST00000534672	ENST00000366760		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
3UTR-intron	ENST00000534672	ENST00000315781		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
3UTR-intron	ENST00000534672	ENST00000366759		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
3UTR-intron	ENST00000534672	ENST00000480897		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000527898	ENST00000366760		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000527898	ENST00000315781		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000527898	ENST00000366759		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000527898	ENST00000480897		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000524713	ENST00000366760		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000524713	ENST00000315781		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000524713	ENST00000366759		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000524713	ENST00000480897		ChiTaRS3.1			BQ335163	PHLDB1	chr11	118516494	-	SNAP47	chr1	227965584	+
5CDS-intron	ENST00000373823	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373823	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373823	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373823	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373823	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373808	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373808	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373808	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373808	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373808	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000436847	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000436847	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000436847	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000436847	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000436847	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000449733	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000449733	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000449733	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000449733	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000449733	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000412819	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000412819	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000412819	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000412819	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000412819	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000394353	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000394353	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000394353	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000394353	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000394353	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000341272	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000341272	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000341272	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000341272	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000341272	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000545652	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000545652	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000545652	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000545652	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000545652	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373818	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373818	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373818	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373818	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373818	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000485767	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000485767	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000485767	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000485767	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000485767	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373807	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373807	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373807	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373807	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
5CDS-intron	ENST00000373807	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000373806	ENST00000293872		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000373806	ENST00000337351		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000373806	ENST00000397783		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000373806	ENST00000397780		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
intron-intron	ENST00000373806	ENST00000494366		ChiTaRS3.1			M78183	GSN	chr9	124088808	+	LUC7L	chr16	319123	-
3UTR-3UTR	ENST00000536252	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000536252	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000545103	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000540348	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000543944	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000297661	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000379186	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000536252		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000545103		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000540348		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000543944		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000297661		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000379186		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
3UTR-3UTR	ENST00000359544	ENST00000359544		ChiTaRS3.1			CA314663	UBAP1	chr9	34252385	-	UBAP1	chr9	34252094	+
5CDS-5UTR	ENST00000244745	ENST00000244745		ChiTaRS3.1			AI817673	SOX4	chr6	21595876	+	SOX4	chr6	21594747	+
5CDS-5UTR	ENST00000244745	ENST00000543472		ChiTaRS3.1			AI817673	SOX4	chr6	21595876	+	SOX4	chr6	21594747	+
5CDS-5UTR	ENST00000543472	ENST00000244745		ChiTaRS3.1			AI817673	SOX4	chr6	21595876	+	SOX4	chr6	21594747	+
5CDS-5UTR	ENST00000543472	ENST00000543472		ChiTaRS3.1			AI817673	SOX4	chr6	21595876	+	SOX4	chr6	21594747	+
intron-3CDS	ENST00000388962	ENST00000388962		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000388962	ENST00000550948		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000388962	ENST00000228463		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000388962		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000550948		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000550948	ENST00000228463		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000388962		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000550948		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3CDS	ENST00000228463	ENST00000228463		ChiTaRS3.1			AW452783	SELPLG	chr12	109018046	+	SELPLG	chr12	109016915	+
intron-3UTR	ENST00000305141	ENST00000441788		ChiTaRS3.1			BG989333	NMUR1	chr2	232391697	-	FZR1	chr19	3535226	-
intron-intron	ENST00000305141	ENST00000313639		ChiTaRS3.1			BG989333	NMUR1	chr2	232391697	-	FZR1	chr19	3535226	-
intron-intron	ENST00000305141	ENST00000395095		ChiTaRS3.1			BG989333	NMUR1	chr2	232391697	-	FZR1	chr19	3535226	-
intron-3CDS	ENST00000391736	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391736	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391736	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391736	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391736	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-3CDS	ENST00000461839	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000461839	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000461839	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000461839	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000461839	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-3CDS	ENST00000270452	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000270452	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000270452	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000270452	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000270452	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-3CDS	ENST00000430952	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000430952	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000430952	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000430952	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000430952	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-3CDS	ENST00000391734	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391734	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391734	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391734	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391734	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-3CDS	ENST00000391733	ENST00000536769		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391733	ENST00000538617		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391733	ENST00000546120		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391733	ENST00000339647		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000391733	ENST00000536661		ChiTaRS3.1			AK092983	LILRB4	chr19	55156884	+	UBC	chr12	125397410	-
intron-intron	ENST00000566780	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000566780	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000566780	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000406884	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000406884	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000406884	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000539474	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000539474	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000539474	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000402655	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000402655	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000402655	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000408984	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000408984	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000408984	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000355860	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000355860	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000355860	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000565791	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000565791	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000565791	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000569818	ENST00000294732		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000569818	ENST00000367409		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-intron	ENST00000569818	ENST00000367408		ChiTaRS3.1			AI064733	WWOX	chr16	78201886	-	ASPM	chr1	197055823	-
intron-3CDS	ENST00000446856	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000446856	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000446856	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000446856	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000446856	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000264758	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000264758	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000264758	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000264758	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398125	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398125	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398125	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398125	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000513328	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000513328	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000513328	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000513328	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000503455	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000503455	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000503455	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000503455	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000355842	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000355842	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000355842	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000355842	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398123	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398123	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398123	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398123	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000398129	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398129	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398129	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000398129	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000338252		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000508830		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000359176		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000395812		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000325674		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000395813		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000510756		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000508608		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000341926		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000511049		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000309190		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000509903		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000511782		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3CDS	ENST00000538860	ENST00000504465		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000538860	ENST00000348386		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000538860	ENST00000508579		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-3UTR	ENST00000538860	ENST00000515663		ChiTaRS3.1			BE000093	ADD1	chr4	2900815	-	CAST	chr5	96084251	+
intron-intron	ENST00000545260	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545260	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545260	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000545693	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000350537	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000346874	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374789	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374790	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374794	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374788	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000466092	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374776	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000340077	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000544292	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374773	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000306320		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000399793		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
intron-intron	ENST00000374768	ENST00000509048		ChiTaRS3.1			AJ710733	PARD3	chr10	34606266	+	FAM134B	chr5	16481118	+
3UTR-intron	ENST00000375749	ENST00000392455		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
3UTR-intron	ENST00000375749	ENST00000392456		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000375730	ENST00000392455		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000375730	ENST00000392456		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000539210	ENST00000392455		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000539210	ENST00000392456		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000486717	ENST00000392455		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000486717	ENST00000392456		ChiTaRS3.1			AI970153	POFUT1	chr20	30822765	-	CCDC50	chr3	191089477	-
intron-intron	ENST00000355875	ENST00000369911		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000355875	ENST00000360864		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000366541	ENST00000369911		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000366541	ENST00000360864		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000343783	ENST00000369911		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000343783	ENST00000360864		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000391846	ENST00000369911		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000391846	ENST00000360864		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000496361	ENST00000369911		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-intron	ENST00000496361	ENST00000360864		ChiTaRS3.1			AW855153	SDCCAG8	chr1	243549017	+	DNAJC5	chr20	62538169	+
intron-3UTR	ENST00000379028	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379028	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379028	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379028	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379028	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000413765	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000413765	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000413765	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000413765	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000351718	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000351718	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000351718	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000351718	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379024	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379024	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379024	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379024	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000379022	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379022	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000379022	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000379022	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000425651	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000425651	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000425651	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000425651	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000379028		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000413765		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000351718		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-3UTR	ENST00000522550	ENST00000379024		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000522550	ENST00000379022		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000522550	ENST00000425651		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-5UTR	ENST00000522550	ENST00000522550		ChiTaRS3.1			AI401223	NRCAM	chr7	107788350	+	NRCAM	chr7	107789159	-
intron-intron	ENST00000569256	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569256	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000569256	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000248098	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000248098	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-5UTR	ENST00000248098	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000562684	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-intron	ENST00000562684	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
3UTR-5UTR	ENST00000562684	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000561516	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000561516	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000561516	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382711	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382711	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000382711	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569765	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000569765	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000569765	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382710	ENST00000427522		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000382710	ENST00000467148		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-5UTR	ENST00000382710	ENST00000479540		ChiTaRS3.1			BI059463	HN1L	chr16	1750892	-	HELZ2	chr20	62201611	-
intron-intron	ENST00000370551	ENST00000541979		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000465038		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000352853		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000371438		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000371436		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000576263		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000371432		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000359524		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370551	ENST00000483243		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000541979		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000465038		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000352853		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000371438		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000371436		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000576263		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000371432		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000359524		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000370550	ENST00000483243		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000541979		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000465038		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000352853		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000371438		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000371436		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000576263		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000371432		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000359524		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-intron	ENST00000356813	ENST00000483243		ChiTaRS3.1			BF917753	HS2ST1	chr1	87381618	-	RUNX2	chr6	45421870	-
intron-3CDS	ENST00000421834	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000421834	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000421834	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000421834	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370769	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370769	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370769	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000370769	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000312431	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000312431	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000312431	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000312431	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370754	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370754	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370754	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000370754	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370788	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370788	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370788	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000370788	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000361203	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000361203	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000361203	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000361203	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000244364	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000244364	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000244364	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000244364	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000446842	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000446842	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000446842	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000446842	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000340834	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000340834	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000340834	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000340834	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370765	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370765	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000370765	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000370765	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000518935	ENST00000360001		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000518935	ENST00000263741		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-3CDS	ENST00000518935	ENST00000545427		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-5UTR	ENST00000518935	ENST00000459994		ChiTaRS3.1			BE315243	DST	chr6	56499627	+	SDF4	chr1	1164104	-
intron-intron	ENST00000356462	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000356462	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000400345	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000589054	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256832	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000382850	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000256830	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000588516	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456986	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000435432	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000357895	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000586263	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000456173	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000356462		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000400345		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000589054		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000256832		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000382850		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000256830		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000588516		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000456986		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000435432		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000357895		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000586263		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000456173		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
intron-intron	ENST00000431212	ENST00000431212		ChiTaRS3.1			CV373443	NEDD4L	chr18	55757276	-	NEDD4L	chr18	55758003	+
In-frame	ENST00000598742	ENST00000368073		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000598742	ENST00000326837		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000598742	ENST00000368074		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000598742	ENST00000608310		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000598742	ENST00000556710		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
Frame-shit	ENST00000598742	ENST00000610139		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
Frame-shit	ENST00000598742	ENST00000475733		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000368073		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000326837		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000368074		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000608310		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000556710		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000610139		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
5UTR-3CDS	ENST00000221975	ENST00000475733		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000593863	ENST00000368073		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000593863	ENST00000326837		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000593863	ENST00000368074		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000593863	ENST00000608310		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
In-frame	ENST00000593863	ENST00000556710		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
Frame-shit	ENST00000593863	ENST00000610139		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
Frame-shit	ENST00000593863	ENST00000475733		ChiTaRS3.1			DB116923	RPS19	chr19	42365223	+	DCAF8	chr1	160209683	-
intron-3CDS	ENST00000346798	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000346798	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000346798	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000354192	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000354192	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000348990	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000348990	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000357903	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000357903	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000358918	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000358918	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000359726	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000359726	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000448388	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000448388	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000440126	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000440126	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000439274	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000439274	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000346798		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000354192		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000348990		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000357903		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000358918		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000359726		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000448388		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000440126		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-3CDS	ENST00000474136	ENST00000439274		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
intron-intron	ENST00000474136	ENST00000474136		ChiTaRS3.1			BE819323	APP	chr21	27284272	+	APP	chr21	27326950	-
5UTR-3CDS	ENST00000358409	ENST00000358409		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
5UTR-3CDS	ENST00000358409	ENST00000359864		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
5UTR-intron	ENST00000358409	ENST00000397122		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
5UTR-3CDS	ENST00000359864	ENST00000358409		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
5UTR-3CDS	ENST00000359864	ENST00000359864		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
5UTR-intron	ENST00000359864	ENST00000397122		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
intron-3CDS	ENST00000397122	ENST00000358409		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
intron-3CDS	ENST00000397122	ENST00000359864		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
intron-intron	ENST00000397122	ENST00000397122		ChiTaRS3.1			BE731603	TEAD4	chr12	3103911	-	TEAD4	chr12	3103970	+
intron-intron	ENST00000356798	ENST00000356798		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000356798	ENST00000358164		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000356798	ENST00000454514		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000356798	ENST00000433423		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000356798	ENST00000568012		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000358164	ENST00000356798		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000358164	ENST00000358164		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000358164	ENST00000454514		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000358164	ENST00000433423		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000358164	ENST00000568012		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000454514	ENST00000356798		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000454514	ENST00000358164		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000454514	ENST00000454514		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000454514	ENST00000433423		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000454514	ENST00000568012		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000433423	ENST00000356798		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000433423	ENST00000358164		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000433423	ENST00000454514		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000433423	ENST00000433423		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000433423	ENST00000568012		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000568012	ENST00000356798		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000568012	ENST00000358164		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000568012	ENST00000454514		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000568012	ENST00000433423		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-intron	ENST00000568012	ENST00000568012		ChiTaRS3.1			AW578803	ITGAL	chr16	30501145	+	ITGAL	chr16	30508107	-
intron-5UTR	ENST00000523629	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000523629	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000523629	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000523629	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000523629	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000523629	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000523629	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000396218	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000396218	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000396218	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000396218	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000396218	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000396218	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000265814	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000265814	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000265814	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000265814	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000265814	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000265814	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000360348	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000360348	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000360348	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000360348	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000360348	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000360348	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000436581	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000436581	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000436581	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000436581	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000436581	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000436581	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000520724	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000520724	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000520724	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000520724	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000520724	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000520724	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000518844	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000518844	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000518844	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000518844	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000518844	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000518844	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000522163	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000522163	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000522163	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000522163	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-intron	ENST00000522163	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5UTR-5UTR	ENST00000522163	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000422361	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000422361	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000422361	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000422361	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000422361	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000422361	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000520686		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000521988		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000521553	ENST00000537541		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000518748		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000521553	ENST00000523580		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000521553	ENST00000520430		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000517858		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000517540		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000378861		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000524037		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000521553	ENST00000521617		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-intron	ENST00000521553	ENST00000519069		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000524107		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
intron-5UTR	ENST00000521553	ENST00000519969		ChiTaRS3.1			DA102333	RUNX1T1	chr8	93107256	-	TRIQK	chr8	93966794	-
5CDS-5UTR	ENST00000308330	ENST00000229795		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
5CDS-5UTR	ENST00000308330	ENST00000229794		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
5CDS-intron	ENST00000308330	ENST00000468133		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
5CDS-intron	ENST00000308330	ENST00000310795		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
3UTR-5UTR	ENST00000541171	ENST00000229795		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
3UTR-5UTR	ENST00000541171	ENST00000229794		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
3UTR-intron	ENST00000541171	ENST00000468133		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
3UTR-intron	ENST00000541171	ENST00000310795		ChiTaRS3.1			L35253	LEMD3	chr12	65563588	-	MAPK14	chr6	35995917	+
intron-intron	ENST00000393432	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000393432	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000393432	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000442819	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000442819	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000442819	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000356731	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000356731	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000356731	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000329433	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000329433	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000329433	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000510411	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000510411	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000510411	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000511300	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000511300	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000511300	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000524180	ENST00000592437		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000524180	ENST00000426739		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
intron-intron	ENST00000524180	ENST00000590748		ChiTaRS3.1			BI036303	HNRNPH1	chr5	179048349	+	ZNF234	chr19	44645929	+
Frame-shit	ENST00000407008	ENST00000407008		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
5CDS-intron	ENST00000407008	ENST00000583517		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
5CDS-intron	ENST00000407008	ENST00000582037		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-3CDS	ENST00000583517	ENST00000407008		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-intron	ENST00000583517	ENST00000583517		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-intron	ENST00000583517	ENST00000582037		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-3CDS	ENST00000582037	ENST00000407008		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-intron	ENST00000582037	ENST00000583517		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-intron	ENST00000582037	ENST00000582037		ChiTaRS3.1			CN280773	NLK	chr17	26490575	-	NLK	chr17	26490605	+
intron-3CDS	ENST00000335221	ENST00000358372		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000335221	ENST00000337387		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000335221	ENST00000494513		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000321892	ENST00000358372		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000321892	ENST00000337387		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000321892	ENST00000494513		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000306378	ENST00000358372		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000306378	ENST00000337387		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000306378	ENST00000494513		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000424123	ENST00000358372		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000424123	ENST00000337387		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000424123	ENST00000494513		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000577770	ENST00000358372		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-3CDS	ENST00000577770	ENST00000337387		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000577770	ENST00000494513		ChiTaRS3.1			BQ364113	BPTF	chr17	65944561	-	WTAP	chr6	160169268	+
intron-intron	ENST00000419277	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000419277	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000419277	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000428995	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000428995	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000463066	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000463066	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000443117	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000443117	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551196	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000551196	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000480521	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000480521	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000415247	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000415247	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000484255	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000484255	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000454805	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000454805	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000549300	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000549300	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000475500	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000475500	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374808	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000374808	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000552158	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000552158	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000488565	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000488565	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000383224	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000383224	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000551933	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000551933	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000474244	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000474244	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000422504	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000422504	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550806	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000550806	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000494775	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000494775	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000515317	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000515317	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000550456	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000550456	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000419277		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000428995		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000463066		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000443117		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000551196		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000480521		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000415247		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000484255		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000454805		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000549300		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000475500		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000374808		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000552158		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000488565		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000383224		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000551933		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000474244		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000422504		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000550806		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000494775		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000515317		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000502285	ENST00000550456		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-5UTR	ENST00000502285	ENST00000502285		ChiTaRS3.1			BE708723	HLA-DPA1	chr6	4521930	+	HLA-DPA1	chr6	4521827	-
intron-intron	ENST00000374490	ENST00000267202		ChiTaRS3.1			AI202943	HMGCL	chr1	24128704	+	VPS37B	chr12	123379777	+
intron-intron	ENST00000436439	ENST00000267202		ChiTaRS3.1			AI202943	HMGCL	chr1	24128704	+	VPS37B	chr12	123379777	+
intron-intron	ENST00000374483	ENST00000267202		ChiTaRS3.1			AI202943	HMGCL	chr1	24128704	+	VPS37B	chr12	123379777	+
intron-intron	ENST00000509389	ENST00000267202		ChiTaRS3.1			AI202943	HMGCL	chr1	24128704	+	VPS37B	chr12	123379777	+
intron-intron	ENST00000356341	ENST00000341170		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000354801		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000356341	ENST00000484708		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000341170		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000354801		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000530617	ENST00000484708		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000341170		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000354801		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000278568	ENST00000484708		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000341170		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000354801		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000528203	ENST00000484708		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000341170		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000354801		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000525542	ENST00000484708		ChiTaRS3.1			AW856683	PAK1	chr11	77066825	+	TSTD2	chr9	100372777	-
intron-intron	ENST00000369940	ENST00000369940		ChiTaRS3.1			BG290903	IRAK1BP1	chr6	79645723	+	IRAK1BP1	chr6	79645672	-
intron-intron	ENST00000369940	ENST00000607739		ChiTaRS3.1			BG290903	IRAK1BP1	chr6	79645723	+	IRAK1BP1	chr6	79645672	-
intron-intron	ENST00000607739	ENST00000369940		ChiTaRS3.1			BG290903	IRAK1BP1	chr6	79645723	+	IRAK1BP1	chr6	79645672	-
intron-intron	ENST00000607739	ENST00000607739		ChiTaRS3.1			BG290903	IRAK1BP1	chr6	79645723	+	IRAK1BP1	chr6	79645672	-
intron-3UTR	ENST00000394729	ENST00000394729		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-3UTR	ENST00000394729	ENST00000330452		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-intron	ENST00000394729	ENST00000477794		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-3UTR	ENST00000330452	ENST00000394729		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-3UTR	ENST00000330452	ENST00000330452		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-intron	ENST00000330452	ENST00000477794		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-3UTR	ENST00000477794	ENST00000394729		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-3UTR	ENST00000477794	ENST00000330452		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-intron	ENST00000477794	ENST00000477794		ChiTaRS3.1			AK130023	PRKCD	chr3	53226919	+	PRKCD	chr3	53226391	+
intron-intron	ENST00000377869	ENST00000315183		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000377869	ENST00000562829		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000377869	ENST00000395799		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000377869	ENST00000432286		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000220616	ENST00000315183		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000220616	ENST00000562829		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000220616	ENST00000395799		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000220616	ENST00000432286		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000542445	ENST00000315183		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000542445	ENST00000562829		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000542445	ENST00000395799		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000542445	ENST00000432286		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000519543	ENST00000315183		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000519543	ENST00000562829		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000519543	ENST00000395799		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000519543	ENST00000432286		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000522523	ENST00000315183		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000522523	ENST00000562829		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000522523	ENST00000395799		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-intron	ENST00000522523	ENST00000432286		ChiTaRS3.1			BF839733	TG	chr8	134025682	-	TNRC6A	chr16	24831390	-
intron-3CDS	ENST00000440909	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000440909	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000440909	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000448921	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000448921	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000437397	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000437397	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000355814	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000355814	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393087	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393087	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000393088	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000393088	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000404814	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000404814	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000449399	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000449399	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000402629	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000402629	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394332		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000394333		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-3CDS	ENST00000555289	ENST00000479035		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000245857		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
intron-5UTR	ENST00000555289	ENST00000577407		ChiTaRS3.1			CB135233	SERPINA1	chr14	94844909	+	RPL23	chr17	37008908	-
3UTR-3CDS	ENST00000327473	ENST00000355831		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000327473	ENST00000343439		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000327473	ENST00000392782		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000327473	ENST00000392783		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-intron	ENST00000327473	ENST00000483316		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
intron-3CDS	ENST00000598107	ENST00000355831		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
intron-3CDS	ENST00000598107	ENST00000343439		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
intron-3CDS	ENST00000598107	ENST00000392782		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
intron-3CDS	ENST00000598107	ENST00000392783		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
intron-intron	ENST00000598107	ENST00000483316		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000536716	ENST00000355831		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000536716	ENST00000343439		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000536716	ENST00000392782		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-3CDS	ENST00000536716	ENST00000392783		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-intron	ENST00000536716	ENST00000483316		ChiTaRS3.1			AW577463	TNFAIP8L1	chr19	4652694	-	BAZ2B	chr2	160243050	-
3UTR-intron	ENST00000380320	ENST00000261783		ChiTaRS3.1			AI656563	EMILIN1	chr2	27309108	-	ARG2	chr14	68116886	+
3UTR-intron	ENST00000380320	ENST00000556491		ChiTaRS3.1			AI656563	EMILIN1	chr2	27309108	-	ARG2	chr14	68116886	+
intron-5UTR	ENST00000508179	ENST00000297338		ChiTaRS3.1			DA775853	SNHG18	chr5	9549029	+	RAD21	chr8	117887016	-
intron-intron	ENST00000508179	ENST00000523986		ChiTaRS3.1			DA775853	SNHG18	chr5	9549029	+	RAD21	chr8	117887016	-
intron-intron	ENST00000508179	ENST00000517749		ChiTaRS3.1			DA775853	SNHG18	chr5	9549029	+	RAD21	chr8	117887016	-
intron-intron	ENST00000508179	ENST00000518055		ChiTaRS3.1			DA775853	SNHG18	chr5	9549029	+	RAD21	chr8	117887016	-
intron-intron	ENST00000508179	ENST00000523547		ChiTaRS3.1			DA775853	SNHG18	chr5	9549029	+	RAD21	chr8	117887016	-
intron-3UTR	ENST00000264161	ENST00000555004		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000264161	ENST00000556728		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000264161	ENST00000421193		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-3UTR	ENST00000537273	ENST00000555004		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000537273	ENST00000556728		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000537273	ENST00000421193		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-3UTR	ENST00000463008	ENST00000555004		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000463008	ENST00000556728		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-intron	ENST00000463008	ENST00000421193		ChiTaRS3.1			M85783	DARS	chr2	136715572	-	C14orf132	chr14	96558379	+
intron-3CDS	ENST00000480687	ENST00000480687		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000480687	ENST00000308375		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000480687	ENST00000308388		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308375	ENST00000480687		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308375	ENST00000308375		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308375	ENST00000308388		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308388	ENST00000480687		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308388	ENST00000308375		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000308388	ENST00000308388		ChiTaRS3.1			BF750903	GMPPB	chr3	49760121	+	GMPPB	chr3	49759295	-
intron-3CDS	ENST00000556029	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000556029	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000556029	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000343315	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000343315	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3CDS	ENST00000266732	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
3UTR-3UTR	ENST00000266732	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000393053	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000393053	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000261210	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000261210	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000432884		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3CDS	ENST00000548223	ENST00000262942		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-3UTR	ENST00000548223	ENST00000471960		ChiTaRS3.1			AW821163	TMPO	chr12	98928676	-	ARPC1A	chr7	98957174	+
intron-intron	ENST00000433218	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000433218	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000221222	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000539827	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000392351	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594794	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000594439	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000542541	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000433218		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000221222		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000539827		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000392351		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000594794		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000594439		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000542541		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000355887	ENST00000355887		ChiTaRS3.1			BQ345853	HOMER3	chr19	19038784	-	HOMER3	chr19	19039138	-
intron-intron	ENST00000264018	ENST00000464233		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000264018	ENST00000436010		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000264018	ENST00000495273		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000264018	ENST00000467549		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000264018	ENST00000466906		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000534980	ENST00000464233		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000534980	ENST00000436010		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000534980	ENST00000495273		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000534980	ENST00000467549		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000534980	ENST00000466906		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000526070	ENST00000464233		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000526070	ENST00000436010		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000526070	ENST00000495273		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000526070	ENST00000467549		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
intron-intron	ENST00000526070	ENST00000466906		ChiTaRS3.1			DN997510	DDX6	chr11	118656818	-	ROBO1	chr3	78766603	+
In-frame	ENST00000578229	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000578229	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000578229	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000578229	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000578229	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000578229	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000578229	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000578229	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000578229	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000578229	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000578229	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580454	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580454	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580454	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580454	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580454	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000580454	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000579760	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000579760	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000579760	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000579760	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000579760	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000579760	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000339142	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000339142	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000339142	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000311661	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000311661	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000311661	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000354124	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000354124	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000354124	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000392445	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000392445	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000392445	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000392445	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000392445	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000581774	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000581774	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000581774	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000581774	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000581774	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000581774	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000583904	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000583904	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000583904	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000583904	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000583904	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000583904	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580474	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580474	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580474	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
Frame-shit	ENST00000580474	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000580474	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
5CDS-3UTR	ENST00000580474	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000578229		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000580454		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000579760		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000339142		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000311661		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000354124		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000392445		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000581774		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000583904		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3CDS	ENST00000582625	ENST00000580474		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
3UTR-3UTR	ENST00000582625	ENST00000582625		ChiTaRS3.1			BG979353	C1QTNF1	chr17	77043757	+	C1QTNF1	chr17	77044141	-
In-frame	ENST00000602795	ENST00000602795		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
In-frame	ENST00000602795	ENST00000344018		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
5CDS-intron	ENST00000602795	ENST00000479207		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
In-frame	ENST00000344018	ENST00000602795		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
In-frame	ENST00000344018	ENST00000344018		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
5CDS-intron	ENST00000344018	ENST00000479207		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
intron-3CDS	ENST00000479207	ENST00000602795		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
intron-3CDS	ENST00000479207	ENST00000344018		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
intron-intron	ENST00000479207	ENST00000479207		ChiTaRS3.1			AW995203	NELFCD	chr20	57556346	-	NELFCD	chr20	57561145	+
intron-3UTR	ENST00000367142	ENST00000367142		ChiTaRS3.1			BF309673	NUCKS1	chr1	205685569	-	NUCKS1	chr1	205686766	-
intron-intron	ENST00000367142	ENST00000464938		ChiTaRS3.1			BF309673	NUCKS1	chr1	205685569	-	NUCKS1	chr1	205686766	-
intron-3UTR	ENST00000464938	ENST00000367142		ChiTaRS3.1			BF309673	NUCKS1	chr1	205685569	-	NUCKS1	chr1	205686766	-
intron-intron	ENST00000464938	ENST00000464938		ChiTaRS3.1			BF309673	NUCKS1	chr1	205685569	-	NUCKS1	chr1	205686766	-
3UTR-intron	ENST00000409858	ENST00000366924		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
3UTR-intron	ENST00000409858	ENST00000308192		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
3UTR-intron	ENST00000409858	ENST00000462918		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
intron-intron	ENST00000476184	ENST00000366924		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
intron-intron	ENST00000476184	ENST00000308192		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
intron-intron	ENST00000476184	ENST00000462918		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
3UTR-intron	ENST00000360271	ENST00000366924		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
3UTR-intron	ENST00000360271	ENST00000308192		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
3UTR-intron	ENST00000360271	ENST00000462918		ChiTaRS3.1			AW301153	UAP1L1	chr9	139978897	-	PLG	chr6	161139002	-
intron-intron	ENST00000380394	ENST00000296499		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000380394	ENST00000433996		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
5CDS-intron	ENST00000498815	ENST00000296499		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
5CDS-intron	ENST00000498815	ENST00000433996		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000380384	ENST00000296499		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000380384	ENST00000433996		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000315377	ENST00000296499		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000315377	ENST00000433996		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000380381	ENST00000296499		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
intron-intron	ENST00000380381	ENST00000433996		ChiTaRS3.1			AV697913	RPS6	chr9	19376253	-	NDST3	chr4	118999891	+
Frame-shit	ENST00000393600	ENST00000370321		ChiTaRS3.1			EL584993	FAM50A	chrX	153674180	-	RPL5	chr1	93301795	-
intron-intron	ENST00000373068	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373068	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373068	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373069	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373069	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373069	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000432073	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000432073	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000432073	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373066	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373066	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373066	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373064	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373064	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000373064	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000433501	ENST00000366928		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000433501	ENST00000366927		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-intron	ENST00000433501	ENST00000483635		ChiTaRS3.1			AW854013	SLC25A25	chr9	130831777	-	LYPLAL1	chr1	219378854	-
intron-3UTR	ENST00000280571	ENST00000280571		ChiTaRS3.1			CA310753	RILPL2	chr12	123900078	+	RILPL2	chr12	123900175	-
intron-intron	ENST00000287218	ENST00000519973		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000287218	ENST00000517923		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000373391	ENST00000519973		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000373391	ENST00000517923		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000463847	ENST00000519973		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000463847	ENST00000517923		ChiTaRS3.1			AF116693	ZFAND3	chr6	37960339	-	SLC25A37	chr8	23427936	+
intron-intron	ENST00000222254	ENST00000222254		ChiTaRS3.1			BF897883	PIK3R2	chr19	18284680	-	PIK3R2	chr19	18288001	+
intron-3UTR	ENST00000222254	ENST00000593731		ChiTaRS3.1			BF897883	PIK3R2	chr19	18284680	-	PIK3R2	chr19	18288001	+
3UTR-intron	ENST00000593731	ENST00000222254		ChiTaRS3.1			BF897883	PIK3R2	chr19	18284680	-	PIK3R2	chr19	18288001	+
3UTR-3UTR	ENST00000593731	ENST00000593731		ChiTaRS3.1			BF897883	PIK3R2	chr19	18284680	-	PIK3R2	chr19	18288001	+
intron-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			U19406	BCR	chr22	23631916	+	ABL1	chr9	133722533	+
intron-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			U19406	BCR	chr22	23631916	+	ABL1	chr9	133722533	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			U19406	BCR	chr22	23631916	+	ABL1	chr9	133722533	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			U19406	BCR	chr22	23631916	+	ABL1	chr9	133722533	+
intron-3UTR	ENST00000341029	ENST00000331872		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000341029	ENST00000417584		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000341029	ENST00000311223		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-5UTR	ENST00000341029	ENST00000491322		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000341029	ENST00000339526		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000355810	ENST00000331872		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000355810	ENST00000417584		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000355810	ENST00000311223		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-5UTR	ENST00000355810	ENST00000491322		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000355810	ENST00000339526		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000349321	ENST00000331872		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000349321	ENST00000417584		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000349321	ENST00000311223		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-5UTR	ENST00000349321	ENST00000491322		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000349321	ENST00000339526		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000513494	ENST00000331872		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000513494	ENST00000417584		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000513494	ENST00000311223		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-5UTR	ENST00000513494	ENST00000491322		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
intron-3UTR	ENST00000513494	ENST00000339526		ChiTaRS3.1			AW168573	ART3	chr4	76942352	+	GLUL	chr1	182352091	-
In-frame	ENST00000309366	ENST00000302424		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
5CDS-intron	ENST00000309366	ENST00000487927		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
In-frame	ENST00000449942	ENST00000302424		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
5CDS-intron	ENST00000449942	ENST00000487927		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
In-frame	ENST00000394540	ENST00000302424		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
5CDS-intron	ENST00000394540	ENST00000487927		ChiTaRS3.1			BQ009803	FKBP2	chr11	64009977	-	TRIM8	chr10	104416937	-
5CDS-intron	ENST00000223273	ENST00000599916		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000223273	ENST00000601773		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000223273	ENST00000397126		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000223273	ENST00000597040		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000448268	ENST00000599916		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000448268	ENST00000601773		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000448268	ENST00000397126		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000448268	ENST00000597040		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000432096	ENST00000599916		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000432096	ENST00000601773		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000432096	ENST00000397126		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000432096	ENST00000597040		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000469737	ENST00000599916		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000469737	ENST00000601773		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000469737	ENST00000397126		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
5CDS-intron	ENST00000469737	ENST00000597040		ChiTaRS3.1			BF773243	YAE1D1	chr7	39610173	+	ZNF208	chr19	22153694	-
intron-3CDS	ENST00000544632	ENST00000275227		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
intron-3CDS	ENST00000544632	ENST00000538764		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
intron-3CDS	ENST00000544632	ENST00000367918		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
intron-intron	ENST00000544632	ENST00000460518		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
3UTR-3CDS	ENST00000342665	ENST00000275227		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
3UTR-3CDS	ENST00000342665	ENST00000538764		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
3UTR-3CDS	ENST00000342665	ENST00000367918		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
3UTR-intron	ENST00000342665	ENST00000460518		ChiTaRS3.1			AW297863	SOX12	chr20	309233	-	SLC18B1	chr6	133097509	-
intron-intron	ENST00000395002	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000395002	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000395002	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000264344	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000264344	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000264344	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000503556	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000503556	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000503556	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000511976	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000511976	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000511976	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000508369	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000508369	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000508369	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000513837	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000513837	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000513837	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000502459	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000502459	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000502459	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000509094	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000509094	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000509094	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000515600	ENST00000268035		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000515600	ENST00000558762		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
intron-intron	ENST00000515600	ENST00000560432		ChiTaRS3.1			BF854623	FAM13A	chr4	89698566	+	IGF1R	chr15	99276714	+
5UTR-3CDS	ENST00000512062	ENST00000396198		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-3CDS	ENST00000512062	ENST00000330807		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-3CDS	ENST00000512062	ENST00000335854		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-5UTR	ENST00000512062	ENST00000498636		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-3CDS	ENST00000307892	ENST00000396198		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-3CDS	ENST00000307892	ENST00000330807		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-3CDS	ENST00000307892	ENST00000335854		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
5UTR-5UTR	ENST00000307892	ENST00000498636		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000515314	ENST00000396198		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000515314	ENST00000330807		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000515314	ENST00000335854		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-5UTR	ENST00000515314	ENST00000498636		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000561792	ENST00000396198		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000561792	ENST00000330807		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3CDS	ENST00000561792	ENST00000335854		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-5UTR	ENST00000561792	ENST00000498636		ChiTaRS3.1			AF130113	CYB5B	chr16	69458507	-	ALAS2	chrX	55044047	-
intron-3UTR	ENST00000393085	ENST00000393085		ChiTaRS3.1			BU608013	MTPN	chr7	135611719	+	MTPN	chr7	135611937	-
intron-intron	ENST00000393085	ENST00000435723		ChiTaRS3.1			BU608013	MTPN	chr7	135611719	+	MTPN	chr7	135611937	-
intron-3UTR	ENST00000435723	ENST00000393085		ChiTaRS3.1			BU608013	MTPN	chr7	135611719	+	MTPN	chr7	135611937	-
intron-intron	ENST00000435723	ENST00000435723		ChiTaRS3.1			BU608013	MTPN	chr7	135611719	+	MTPN	chr7	135611937	-
intron-intron	ENST00000392870	ENST00000392870		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000392870	ENST00000369108		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000392870	ENST00000473264		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000369108	ENST00000392870		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000369108	ENST00000369108		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000369108	ENST00000473264		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000473264	ENST00000392870		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000473264	ENST00000369108		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-intron	ENST00000473264	ENST00000473264		ChiTaRS3.1			BI037433	GRK5	chr10	121115873	-	GRK5	chr10	121116100	+
intron-3UTR	ENST00000261789	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000261789	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000261789	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000261789	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000528669	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000528669	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000528669	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000528669	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000556387	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000556387	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000556387	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000556387	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000530611	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000530611	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000530611	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000530611	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000524835	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000524835	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000524835	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000524835	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000396854	ENST00000354177		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000396854	ENST00000361547		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-3UTR	ENST00000396854	ENST00000374315		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-intron	ENST00000396854	ENST00000494537		ChiTaRS3.1			BM826473	TM9SF1	chr14	24674986	-	SEPN1	chr1	26143972	+
intron-5UTR	ENST00000496760	ENST00000609713		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-intron	ENST00000496760	ENST00000288309		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-5UTR	ENST00000380590	ENST00000609713		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-intron	ENST00000380590	ENST00000288309		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-5UTR	ENST00000377716	ENST00000609713		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-intron	ENST00000377716	ENST00000288309		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-5UTR	ENST00000242275	ENST00000609713		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-intron	ENST00000242275	ENST00000288309		ChiTaRS3.1			U52153	SLC25A51	chr9	37883758	-	KCNJ6	chr21	39288696	-
intron-intron	ENST00000361654	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000361654	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000361654	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000361654	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000361654	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000545889	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000545889	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000545889	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000545889	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000545889	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000302528	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000302528	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000302528	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000302528	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000302528	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000358808	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000358808	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000358808	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000358808	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000358808	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000537178	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000537178	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000537178	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000537178	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000537178	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540338	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540338	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540338	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540338	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540338	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000536634	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000536634	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000536634	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000536634	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000536634	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540539	ENST00000262960		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540539	ENST00000598800		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540539	ENST00000597849		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540539	ENST00000594671		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-intron	ENST00000540539	ENST00000601173		ChiTaRS3.1			BF369453	CLIP1	chr12	122876563	+	DPP9	chr19	4717257	-
intron-3CDS	ENST00000452611	ENST00000463381		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000452611	ENST00000473312		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000452611	ENST00000479901		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000452611	ENST00000397238		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000452611	ENST00000476375		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000452611	ENST00000335367		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-3CDS	ENST00000382622	ENST00000463381		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000382622	ENST00000473312		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000382622	ENST00000479901		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000382622	ENST00000397238		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000382622	ENST00000476375		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000382622	ENST00000335367		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-3CDS	ENST00000261252	ENST00000463381		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000261252	ENST00000473312		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000261252	ENST00000479901		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000261252	ENST00000397238		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000261252	ENST00000476375		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-intron	ENST00000261252	ENST00000335367		ChiTaRS3.1			DA749093	PRMT8	chr12	3490493	-	AGAP3	chr7	150820881	+
intron-5UTR	ENST00000540664	ENST00000528737		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000420244		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000529985		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000361723		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000540664	ENST00000533703		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000540664	ENST00000531147		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371103	ENST00000528737		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000420244		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000529985		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000361723		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371103	ENST00000533703		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371103	ENST00000531147		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000356016	ENST00000528737		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000420244		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000529985		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000361723		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000356016	ENST00000533703		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000356016	ENST00000531147		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371097	ENST00000528737		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000420244		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000529985		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000361723		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000371097	ENST00000533703		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000371097	ENST00000531147		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000498444	ENST00000528737		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000420244		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000529985		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000361723		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-5UTR	ENST00000498444	ENST00000533703		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
intron-intron	ENST00000498444	ENST00000531147		ChiTaRS3.1			AW851333	LCOR	chr10	98675268	-	FAM111A	chr11	58913003	+
5UTR-intron	ENST00000303562	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000303562	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000303562	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000554617	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000554617	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000554617	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
3UTR-intron	ENST00000556324	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
3UTR-intron	ENST00000556324	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
3UTR-intron	ENST00000556324	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000535987	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000535987	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
5UTR-intron	ENST00000535987	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555242	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555242	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555242	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555686	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555686	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555686	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555347	ENST00000591778		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555347	ENST00000262776		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
intron-intron	ENST00000555347	ENST00000585407		ChiTaRS3.1			DB255923	FOS	chr14	75745631	+	LGALS3BP	chr17	76969713	-
3UTR-3UTR	ENST00000391857	ENST00000286201		ChiTaRS3.1			BU683473	RPL13A	chr19	49995512	-	FZD7	chr2	202902537	+
intron-3UTR	ENST00000477613	ENST00000286201		ChiTaRS3.1			BU683473	RPL13A	chr19	49995512	-	FZD7	chr2	202902537	+
intron-3UTR	ENST00000373365	ENST00000373365		ChiTaRS3.1			BU507823	GLO1	chr6	38644891	+	GLO1	chr6	38644866	-
intron-5UTR	ENST00000373365	ENST00000470973		ChiTaRS3.1			BU507823	GLO1	chr6	38644891	+	GLO1	chr6	38644866	-
intron-3UTR	ENST00000470973	ENST00000373365		ChiTaRS3.1			BU507823	GLO1	chr6	38644891	+	GLO1	chr6	38644866	-
intron-5UTR	ENST00000470973	ENST00000470973		ChiTaRS3.1			BU507823	GLO1	chr6	38644891	+	GLO1	chr6	38644866	-
intron-intron	ENST00000396743	ENST00000525842		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000396743	ENST00000397753		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000396743	ENST00000357899		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000396743	ENST00000530205		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000156084	ENST00000525842		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000156084	ENST00000397753		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000156084	ENST00000357899		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000156084	ENST00000530205		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000376488	ENST00000525842		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000376488	ENST00000397753		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000376488	ENST00000357899		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000376488	ENST00000530205		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000428668	ENST00000525842		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000428668	ENST00000397753		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000428668	ENST00000357899		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000428668	ENST00000530205		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000484499	ENST00000525842		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000484499	ENST00000397753		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000484499	ENST00000357899		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-intron	ENST00000484499	ENST00000530205		ChiTaRS3.1			AI743143	OTUD5	chrX	48779983	+	ZBTB44	chr11	130109699	+
intron-3UTR	ENST00000589651	ENST00000309428		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
intron-intron	ENST00000589651	ENST00000585894		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
intron-intron	ENST00000589651	ENST00000543197		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
3UTR-3UTR	ENST00000270233	ENST00000309428		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
3UTR-intron	ENST00000270233	ENST00000585894		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
3UTR-intron	ENST00000270233	ENST00000543197		ChiTaRS3.1			BG953583	BCAM	chr19	45324574	+	FAM134C	chr17	40731552	+
3UTR-3UTR	ENST00000238788	ENST00000238788		ChiTaRS3.1			BU618613	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000238788	ENST00000404032		ChiTaRS3.1			BU618613	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000404032	ENST00000238788		ChiTaRS3.1			BU618613	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
3UTR-3UTR	ENST00000404032	ENST00000404032		ChiTaRS3.1			BU618613	TMEM214	chr2	27263787	-	TMEM214	chr2	27264498	+
intron-3UTR	ENST00000535458	ENST00000593829		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000535458	ENST00000252816		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
3UTR-3UTR	ENST00000290158	ENST00000593829		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
3UTR-3UTR	ENST00000290158	ENST00000252816		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000540627	ENST00000593829		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000540627	ENST00000252816		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000537679	ENST00000593829		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000537679	ENST00000252816		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000577918	ENST00000593829		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-3UTR	ENST00000577918	ENST00000252816		ChiTaRS3.1			AF074643	KPNB1	chr17	45760799	-	LSM4	chr19	18417875	+
intron-intron	ENST00000487070	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000487070	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000487070	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000431828	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000431828	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000431828	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000599854	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000599854	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000599854	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000441706	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000441706	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000441706	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000440133	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000440133	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000440133	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000435669	ENST00000272117		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000435669	ENST00000429204		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-intron	ENST00000435669	ENST00000366784		ChiTaRS3.1			BF734773	KANSL3	chr2	97259164	-	ITPKB	chr1	226819390	+
intron-3UTR	ENST00000375300	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000375300	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000292055	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000292055	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000375288	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000375288	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000434315	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000434315	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000542607	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000542607	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000446921	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000446921	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-3UTR	ENST00000488337	ENST00000370473		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-5UTR	ENST00000488337	ENST00000484970		ChiTaRS3.1			BE698343	SIK3	chr11	116748920	+	GBP1	chr1	89519031	+
intron-intron	ENST00000393085	ENST00000538486		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000397323		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000320203		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000287771		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000339877		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000517860		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000520161		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000519647		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000520191		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000393085	ENST00000520916		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000538486		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000397323		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000320203		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000287771		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000339877		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000517860		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000520161		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000519647		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000520191		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000435723	ENST00000520916		ChiTaRS3.1			AJ711463	MTPN	chr7	135645771	+	RBPMS	chr8	30280953	+
intron-intron	ENST00000531709	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531709	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000294172	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000532297	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000533048	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000531131	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000393701		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000568461		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000288040		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
intron-intron	ENST00000439713	ENST00000449317		ChiTaRS3.1			BE551533	NXF1	chr11	62559952	+	CLEC18A	chr16	70192627	-
5CDS-3UTR	ENST00000372628	ENST00000533861		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
5CDS-3UTR	ENST00000372628	ENST00000333449		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
5CDS-3UTR	ENST00000243286	ENST00000533861		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
5CDS-3UTR	ENST00000243286	ENST00000333449		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
5CDS-3UTR	ENST00000372627	ENST00000533861		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
5CDS-3UTR	ENST00000372627	ENST00000333449		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
intron-3UTR	ENST00000477014	ENST00000533861		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
intron-3UTR	ENST00000477014	ENST00000333449		ChiTaRS3.1			CB053893	TCEAL3	chrX	102864548	-	TMEM179B	chr11	62557651	+
intron-3CDS	ENST00000380738	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380738	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380738	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380738	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380738	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000380738	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380733	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380733	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380733	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380733	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380733	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000380733	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380715	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380715	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380715	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380715	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380715	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000380715	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380716	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380716	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380716	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380716	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000380716	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000380716	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000397519	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000397519	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000397519	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000397519	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000397519	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000397519	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000484265	ENST00000380738		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000484265	ENST00000380733		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000484265	ENST00000380715		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000484265	ENST00000380716		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-3CDS	ENST00000484265	ENST00000397519		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
intron-intron	ENST00000484265	ENST00000484265		ChiTaRS3.1			DA143253	PSIP1	chr9	15474593	+	PSIP1	chr9	15472699	+
3UTR-intron	ENST00000452510	ENST00000336934		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
3UTR-intron	ENST00000452510	ENST00000255486		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
3UTR-intron	ENST00000452510	ENST00000399365		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
3UTR-intron	ENST00000452510	ENST00000487412		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
3UTR-intron	ENST00000452510	ENST00000439831		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000354283	ENST00000336934		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000354283	ENST00000255486		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000354283	ENST00000399365		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000354283	ENST00000487412		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000354283	ENST00000439831		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000509178	ENST00000336934		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000509178	ENST00000255486		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000509178	ENST00000399365		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000509178	ENST00000487412		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000509178	ENST00000439831		ChiTaRS3.1			AI743643	DDX46	chr5	134165587	-	STARD13	chr13	33821384	+
intron-intron	ENST00000486901	ENST00000486901		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000486901	ENST00000374695		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000486901	ENST00000430507		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000374695	ENST00000486901		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000374695	ENST00000374695		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000374695	ENST00000430507		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000430507	ENST00000486901		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000430507	ENST00000374695		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-intron	ENST00000430507	ENST00000430507		ChiTaRS3.1			BE927253	HSPG2	chr1	22207023	+	HSPG2	chr1	22242274	-
intron-3UTR	ENST00000441714	ENST00000441714		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000441714	ENST00000345046		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000441714	ENST00000458587		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-intron	ENST00000441714	ENST00000468947		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000345046	ENST00000441714		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000345046	ENST00000345046		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000345046	ENST00000458587		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-intron	ENST00000345046	ENST00000468947		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000458587	ENST00000441714		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000458587	ENST00000345046		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000458587	ENST00000458587		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-intron	ENST00000458587	ENST00000468947		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000468947	ENST00000441714		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000468947	ENST00000345046		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-3UTR	ENST00000468947	ENST00000458587		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-intron	ENST00000468947	ENST00000468947		ChiTaRS3.1			BE742553	BCAP31	chrX	152967523	+	BCAP31	chrX	152966343	-
intron-intron	ENST00000378823	ENST00000231454		ChiTaRS3.1			DQ655971	RAD50	chr8	61822442	-	IL5	chr5	131892531	-
intron-intron	ENST00000265335	ENST00000231454		ChiTaRS3.1			DQ655971	RAD50	chr8	61822442	-	IL5	chr5	131892531	-
intron-intron	ENST00000487596	ENST00000231454		ChiTaRS3.1			DQ655971	RAD50	chr8	61822442	-	IL5	chr5	131892531	-
Frame-shit	ENST00000357847	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000357847	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000357847	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000357847	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000357847	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000344492	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000344492	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000344492	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000344492	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3UTR	ENST00000344492	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000275235	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000275235	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000275235	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000275235	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000275235	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000367598	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000367598	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000367598	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000367598	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000367598	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000494282	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000494282	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000494282	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000494282	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000494282	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000367596	ENST00000225724		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000367596	ENST00000451249		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000367596	ENST00000467337		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000367596	ENST00000581721		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3UTR	ENST00000367596	ENST00000579905		ChiTaRS3.1			KC119451	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-intron	ENST00000377795	ENST00000298352		ChiTaRS3.1			K01144	CD74	chr5	149781300	-	NGB	chr14	77736137	+
intron-intron	ENST00000353334	ENST00000298352		ChiTaRS3.1			K01144	CD74	chr5	149781300	-	NGB	chr14	77736137	+
intron-intron	ENST00000524315	ENST00000298352		ChiTaRS3.1			K01144	CD74	chr5	149781300	-	NGB	chr14	77736137	+
intron-intron	ENST00000009530	ENST00000298352		ChiTaRS3.1			K01144	CD74	chr5	149781300	-	NGB	chr14	77736137	+
Frame-shit	ENST00000355086	ENST00000228705		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
5CDS-intron	ENST00000355086	ENST00000551214		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
Frame-shit	ENST00000357825	ENST00000228705		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
5CDS-intron	ENST00000357825	ENST00000551214		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
intron-3CDS	ENST00000543397	ENST00000228705		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
intron-intron	ENST00000543397	ENST00000551214		ChiTaRS3.1			KF179301	SRGAP1	chr12	64238664	+	PPM1H	chr12	63226061	-
In-frame	ENST00000242365	ENST00000288602		ChiTaRS3.1			AM989472	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
In-frame	ENST00000440172	ENST00000288602		ChiTaRS3.1			AM989472	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
In-frame	ENST00000422774	ENST00000288602		ChiTaRS3.1			AM989472	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
In-frame	ENST00000242365	ENST00000288602		ChiTaRS3.1			AM989475	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
In-frame	ENST00000440172	ENST00000288602		ChiTaRS3.1			AM989475	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
In-frame	ENST00000422774	ENST00000288602		ChiTaRS3.1			AM989475	KIAA1549	chr7	138545884	-	BRAF	chr7	140487384	-
intron-intron	ENST00000336777	ENST00000415083		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000542420		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000542743		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000539849		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000269137		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000545952		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000336777	ENST00000585241		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000415083		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000542420		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000542743		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000539849		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000269137		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000545952		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000337502	ENST00000585241		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000415083		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000542420		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000542743		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000539849		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000269137		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000545952		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
intron-intron	ENST00000476392	ENST00000585241		ChiTaRS3.1			AY138495	SSX2	chrX	52731351	-	SS18	chr18	23610357	-
5CDS-5UTR	ENST00000332797	ENST00000339602		ChiTaRS3.1			KC819276	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
5CDS-5UTR	ENST00000332797	ENST00000296980		ChiTaRS3.1			KC819276	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
5CDS-5UTR	ENST00000332797	ENST00000349184		ChiTaRS3.1			KC819276	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138491	SS18	chr18	23607983	-	SSX2	chrX	52731444	-
In-frame	ENST00000379561	ENST00000392069		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000344493		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000350526		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000336840		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000392070		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409551		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-5UTR	ENST00000379561	ENST00000464706		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409828		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000258387		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-3CDS	ENST00000473775	ENST00000392069		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000344493		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000350526		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000336840		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000392070		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409551		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-5UTR	ENST00000473775	ENST00000464706		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409828		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000258387		ChiTaRS3.1			JX141476	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU447303	BCR	chr22	23632600	+	ABL1	chr9	133596052	+
5CDS-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU447303	BCR	chr22	23632600	+	ABL1	chr9	133596052	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU447303	BCR	chr22	23632600	+	ABL1	chr9	133596052	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU447303	BCR	chr22	23632600	+	ABL1	chr9	133596052	+
intron-intron	ENST00000534358	ENST00000532317		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000534358	ENST00000526033		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000534358	ENST00000393346		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000534358	ENST00000528398		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000534358	ENST00000356360		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000534358	ENST00000528411		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000532317		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000526033		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000393346		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000528398		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000356360		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000389506	ENST00000528411		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000532317		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000526033		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000393346		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000528398		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000356360		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000354520	ENST00000528411		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000532317		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000526033		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000393346		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000528398		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000356360		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
intron-intron	ENST00000420751	ENST00000528411		ChiTaRS3.1			AF477007	KMT2A	chr11	118355475	+	PICALM	chr11	85720153	-
Frame-shit	ENST00000520539	ENST00000561648		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000563137		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000562871		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000262383		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000535559		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000567169		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000520539	ENST00000562520		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000561648		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000563137		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000562871		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000262383		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000535559		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000567169		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000220959	ENST00000562520		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000561648		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000563137		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000562871		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000262383		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000535559		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000567169		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000518205	ENST00000562520		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000561648		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000563137		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000562871		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000262383		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000535559		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000567169		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
Frame-shit	ENST00000521922	ENST00000562520		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000561648		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000563137		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000562871		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000262383		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000535559		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000567169		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
intron-3CDS	ENST00000519528	ENST00000562520		ChiTaRS3.1			KC155256	UBR5	chr8	103424401	-	ZNF423	chr16	49559408	-
In-frame	ENST00000395811	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000395811	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000444976	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000395804	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000341712	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-intron	ENST00000395806	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000392302		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000368196		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000524377		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000358660		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-intron	ENST00000395807	ENST00000531606		ChiTaRS3.1			KF724384	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			AJ229253	EWSR1	chr22	29684552	+	FLI1	chr11	128645452	+
In-frame	ENST00000242365	ENST00000288602		ChiTaRS3.1			AM989477	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
In-frame	ENST00000440172	ENST00000288602		ChiTaRS3.1			AM989477	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
In-frame	ENST00000422774	ENST00000288602		ChiTaRS3.1			AM989477	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
In-frame	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
5CDS-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189470	RUNX1	chr21	36231771	-	RUNX1T1	chr8	93029591	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795254	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795254	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795254	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795254	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
5CDS-intron	ENST00000318522	ENST00000389048		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000402711	ENST00000389048		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
intron-intron	ENST00000482660	ENST00000389048		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000401738	ENST00000389048		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5CDS-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5UTR-intron	ENST00000453191	ENST00000389048		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5UTR-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
5UTR-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			GU797894	EML4	chr2	42531692	+	ALK	chr2	29446427	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795255	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795255	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795255	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795255	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
intron-3CDS	ENST00000377795	ENST00000368508		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000377795	ENST00000368507		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000353334	ENST00000368508		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000353334	ENST00000368507		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000524315	ENST00000368508		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
intron-3CDS	ENST00000524315	ENST00000368507		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000009530	ENST00000368508		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
In-frame	ENST00000009530	ENST00000368507		ChiTaRS3.1			AB795245	CD74	chr5	149784243	-	ROS1	chr6	117645580	-
5CDS-intron	ENST00000305877	ENST00000271732		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
5CDS-intron	ENST00000305877	ENST00000540514		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
5CDS-intron	ENST00000305877	ENST00000479757		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
5CDS-intron	ENST00000359540	ENST00000271732		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
5CDS-intron	ENST00000359540	ENST00000540514		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
5CDS-intron	ENST00000359540	ENST00000479757		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000398512	ENST00000271732		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000398512	ENST00000540514		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000398512	ENST00000479757		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000436990	ENST00000271732		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000436990	ENST00000540514		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-intron	ENST00000436990	ENST00000479757		ChiTaRS3.1			EU154998	BCR	chr22	23615962	+	GOLPH3L	chr1	150650584	-
intron-3CDS	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
Frame-shit	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-5UTR	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-3CDS	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-3CDS	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-3CDS	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5UTR-5UTR	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-3CDS	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
intron-5UTR	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189468	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93029593	-
5CDS-intron	ENST00000348405	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000369760		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000356489		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000320393		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000545529		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000486968		ChiTaRS3.1			AF161393	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000369760		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000356489		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000320393		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000545529		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000486968		ChiTaRS3.1			CR933696	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
Frame-shit	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU216059	BCR	chr22	23603622	+	ABL1	chr9	133729451	+
Frame-shit	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU216059	BCR	chr22	23603622	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU216059	BCR	chr22	23603622	+	ABL1	chr9	133729451	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU216059	BCR	chr22	23603622	+	ABL1	chr9	133729451	+
intron-3UTR	ENST00000504570	ENST00000449886		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000504570	ENST00000373464		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000504570	ENST00000373457		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000504570	ENST00000497064		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-3UTR	ENST00000382051	ENST00000449886		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-3UTR	ENST00000382051	ENST00000373464		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-intron	ENST00000382051	ENST00000373457		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-intron	ENST00000382051	ENST00000497064		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000503434	ENST00000449886		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000503434	ENST00000373464		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000503434	ENST00000373457		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000503434	ENST00000497064		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000510033	ENST00000449886		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000510033	ENST00000373464		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000510033	ENST00000373457		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000510033	ENST00000497064		ChiTaRS3.1			BC142704	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000253048	ENST00000253048		ChiTaRS3.1			X58238	ZC3H4	chr19	47570849	-	ZC3H4	chr19	47588580	+
intron-intron	ENST00000253048	ENST00000594019		ChiTaRS3.1			X58238	ZC3H4	chr19	47570849	-	ZC3H4	chr19	47588580	+
intron-intron	ENST00000594019	ENST00000253048		ChiTaRS3.1			X58238	ZC3H4	chr19	47570849	-	ZC3H4	chr19	47588580	+
intron-intron	ENST00000594019	ENST00000594019		ChiTaRS3.1			X58238	ZC3H4	chr19	47570849	-	ZC3H4	chr19	47588580	+
In-frame	ENST00000375375	ENST00000379561		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000375375	ENST00000473775		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
In-frame	ENST00000420770	ENST00000379561		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000420770	ENST00000473775		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
In-frame	ENST00000400661	ENST00000379561		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
5CDS-5UTR	ENST00000400661	ENST00000473775		ChiTaRS3.1			HQ824715	PAX7	chr1	19029790	+	FOXO1	chr13	41135000	-
In-frame	ENST00000242365	ENST00000288602		ChiTaRS3.1			AM989474	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
In-frame	ENST00000440172	ENST00000288602		ChiTaRS3.1			AM989474	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
In-frame	ENST00000422774	ENST00000288602		ChiTaRS3.1			AM989474	KIAA1549	chr7	138552720	-	BRAF	chr7	140487384	-
intron-intron	ENST00000341520	ENST00000448637		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
intron-intron	ENST00000341520	ENST00000312675		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
intron-intron	ENST00000341520	ENST00000543006		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
intron-intron	ENST00000341520	ENST00000471917		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000416649	ENST00000448637		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000416649	ENST00000312675		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000416649	ENST00000543006		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000416649	ENST00000471917		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000294129	ENST00000448637		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000294129	ENST00000312675		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000294129	ENST00000543006		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000294129	ENST00000471917		ChiTaRS3.1			BC026280	NCKIPSD	chr3	48711281	-	LPP	chr3	188227681	-
5CDS-intron	ENST00000305877	ENST00000318560		ChiTaRS3.1			EU394717	BCR	chr22	23615935	+	ABL1	chr9	133729435	+
5CDS-intron	ENST00000359540	ENST00000318560		ChiTaRS3.1			EU394717	BCR	chr22	23615935	+	ABL1	chr9	133729435	+
intron-intron	ENST00000398512	ENST00000318560		ChiTaRS3.1			EU394717	BCR	chr22	23615935	+	ABL1	chr9	133729435	+
intron-intron	ENST00000436990	ENST00000318560		ChiTaRS3.1			EU394717	BCR	chr22	23615935	+	ABL1	chr9	133729435	+
Frame-shit	ENST00000358127	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000358127	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000358127	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000358127	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000358127	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000358127	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000358127	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000358127	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000358127	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000523241	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000523241	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000523241	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000523241	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523241	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523241	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523241	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523241	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523241	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000520154	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000520154	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000520154	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000520154	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000520154	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000520154	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000520154	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000520154	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000520154	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377852	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377852	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377852	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377852	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377852	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377852	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377852	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377852	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377852	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377853	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377853	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377853	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377853	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377853	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377853	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377853	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377853	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377853	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000522003	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000522003	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000522003	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000522003	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000522003	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000522003	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000522003	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000522003	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000522003	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000520281	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000520281	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000520281	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000520281	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000520281	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000520281	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000520281	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000520281	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000520281	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000414447	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000414447	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000414447	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-3CDS	ENST00000414447	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000414447	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000414447	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000414447	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000414447	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
intron-intron	ENST00000414447	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000523145	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000523145	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000523145	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000523145	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523145	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523145	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523145	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523145	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000523145	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000446742	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000446742	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000446742	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000446742	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000446742	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000446742	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000446742	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000446742	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000446742	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377847	ENST00000318789		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377847	ENST00000475937		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377847	ENST00000493089		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
Frame-shit	ENST00000377847	ENST00000484350		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377847	ENST00000318779		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377847	ENST00000491238		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377847	ENST00000498215		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377847	ENST00000468577		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
5CDS-intron	ENST00000377847	ENST00000472382		ChiTaRS3.1			EU784145	PAX5	chr9	37002645	-	FOXP1	chr3	71064806	-
In-frame	ENST00000437600	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000437600	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000292538	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000292538	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000393824	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000393824	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000547394	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000547394	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000360264	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000360264	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000425244	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000425244	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000292535	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000292535	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000549414	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000549414	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000556210	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000556210	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000550008	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000550008	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000546411	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
In-frame	ENST00000546411	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
3UTR-3CDS	ENST00000560541	ENST00000355710		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
3UTR-3CDS	ENST00000560541	ENST00000340058		ChiTaRS3.1			KF421948	CUX1	chr7	101813831	+	RET	chr10	43612031	+
3UTR-3CDS	ENST00000376637	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
3UTR-3CDS	ENST00000400895	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
3UTR-3CDS	ENST00000491346	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
Frame-shit	ENST00000376629	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
3UTR-3CDS	ENST00000376627	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
Frame-shit	ENST00000314340	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
3UTR-3CDS	ENST00000452018	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
In-frame	ENST00000510878	ENST00000288602		ChiTaRS3.1			HM053972	AGTRAP	chr1	11810243	+	BRAF	chr7	140494268	-
In-frame	ENST00000348520	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000348520	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000348520	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000380038	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000380038	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000380038	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000389744	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000389744	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000389744	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000557575	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000557575	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000557575	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000553286	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000553286	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000553286	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000347839	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000347839	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000347839	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000555836	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000555836	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000555836	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000334553	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000334553	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000334553	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000246489	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000246489	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000246489	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000557450	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000557450	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000557450	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000554280	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000554280	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000554280	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000452929	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000452929	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000452929	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
In-frame	ENST00000445352	ENST00000389048		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000445352	ENST00000431873		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
5CDS-intron	ENST00000445352	ENST00000498037		ChiTaRS3.1			AB781674	KLC1	chr14	104139768	+	ALK	chr2	29446395	-
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138492	SS18	chr18	23608220	-	SSX2	chrX	52729862	-
5CDS-intron	ENST00000373644	ENST00000462405		ChiTaRS3.1			AL713658	TET1	chr10	70451381	+	HFM1	chr1	91845786	+
5CDS-intron	ENST00000373644	ENST00000370425		ChiTaRS3.1			AL713658	TET1	chr10	70451381	+	HFM1	chr1	91845786	+
5CDS-5UTR	ENST00000373644	ENST00000294696		ChiTaRS3.1			AL713658	TET1	chr10	70451381	+	HFM1	chr1	91845786	+
5CDS-5UTR	ENST00000373644	ENST00000370424		ChiTaRS3.1			AL713658	TET1	chr10	70451381	+	HFM1	chr1	91845786	+
5CDS-intron	ENST00000375375	ENST00000399763		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
5CDS-intron	ENST00000375375	ENST00000399766		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
5CDS-intron	ENST00000375375	ENST00000374343		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
5CDS-intron	ENST00000375375	ENST00000470035		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000420770	ENST00000399763		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000420770	ENST00000399766		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000420770	ENST00000374343		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000420770	ENST00000470035		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000400661	ENST00000399763		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000400661	ENST00000399766		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000400661	ENST00000374343		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
intron-intron	ENST00000400661	ENST00000470035		ChiTaRS3.1			X96748	PAX7	chr1	19062635	+	TMEM57	chr1	25768249	-
5CDS-3UTR	ENST00000322564	ENST00000555245		ChiTaRS3.1			KF612914	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000556605		ChiTaRS3.1			KF612914	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000336643		ChiTaRS3.1			KF612914	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000031146		ChiTaRS3.1			KF612914	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000557046		ChiTaRS3.1			KF612914	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138490	SS18	chr18	23610379	-	SSX2	chrX	52731318	-
In-frame	ENST00000379561	ENST00000392069		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000344493		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000350526		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000336840		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000392070		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409551		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-5UTR	ENST00000379561	ENST00000464706		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409828		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000258387		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-3CDS	ENST00000473775	ENST00000392069		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000344493		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000350526		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000336840		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000392070		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409551		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-5UTR	ENST00000473775	ENST00000464706		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409828		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000258387		ChiTaRS3.1			JX141475	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000344691	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000344691	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000344691	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000344691	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000344691	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000344691	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000344691	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000344691	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000344691	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000344691	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000325074	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000325074	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000325074	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000325074	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000325074	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000437180	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000437180	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000437180	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000437180	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000437180	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000300305	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000300305	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000300305	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000300305	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000300305	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000399240	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000399240	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000399240	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000399240	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000399240	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000486278	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000486278	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000486278	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000486278	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000486278	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000494829	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000494829	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000494829	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-5UTR	ENST00000494829	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
intron-intron	ENST00000494829	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000342704		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000358356	ENST00000375279		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000344201		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000358356	ENST00000397798		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000358356	ENST00000346541		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000397800		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-5UTR	ENST00000358356	ENST00000492345		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000359606		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000491618		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
5CDS-intron	ENST00000358356	ENST00000543126		ChiTaRS3.1			GU086368	RUNX1	chr21	36206707	-	CBFA2T2	chr20	32161779	+
3UTR-3CDS	ENST00000377795	ENST00000392302		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
3UTR-3CDS	ENST00000377795	ENST00000368196		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
3UTR-3CDS	ENST00000377795	ENST00000524377		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
3UTR-3CDS	ENST00000377795	ENST00000358660		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
3UTR-intron	ENST00000377795	ENST00000531606		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000353334	ENST00000392302		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000353334	ENST00000368196		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000353334	ENST00000524377		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000353334	ENST00000358660		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000353334	ENST00000531606		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000524315	ENST00000392302		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000524315	ENST00000368196		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000524315	ENST00000524377		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-3CDS	ENST00000524315	ENST00000358660		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-intron	ENST00000524315	ENST00000531606		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000009530	ENST00000392302		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000009530	ENST00000368196		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000009530	ENST00000524377		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
In-frame	ENST00000009530	ENST00000358660		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
5CDS-intron	ENST00000009530	ENST00000531606		ChiTaRS3.1			HG532018	CD74	chr5	149782126	-	NTRK1	chr1	156844360	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			AJ229260	FLI1	chr11	128659606	+	EWSR1	chr22	29683933	+
intron-intron	ENST00000392069	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392069	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000344493	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000350526	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000336840	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000392070	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409551	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000464706	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000409828	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000392069		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000344493		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000350526		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000336840		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000392070		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000409551		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000464706		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000409828		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
intron-intron	ENST00000258387	ENST00000258387		ChiTaRS3.1			U12259	PAX3	chr2	223084416	+	PAX3	chr2	223079063	-
In-frame	ENST00000354725	ENST00000288602		ChiTaRS3.1			JX013981	SND1	chr7	127631110	+	BRAF	chr7	140487386	-
3UTR-3CDS	ENST00000467238	ENST00000288602		ChiTaRS3.1			JX013981	SND1	chr7	127631110	+	BRAF	chr7	140487386	-
In-frame	ENST00000379561	ENST00000392069		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000344493		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000350526		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000336840		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000392070		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409551		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-5UTR	ENST00000379561	ENST00000464706		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000409828		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
5CDS-intron	ENST00000379561	ENST00000258387		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-3CDS	ENST00000473775	ENST00000392069		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000344493		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000350526		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000336840		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000392070		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409551		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-5UTR	ENST00000473775	ENST00000464706		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000409828		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
intron-intron	ENST00000473775	ENST00000258387		ChiTaRS3.1			JX141474	FOXO1	chr13	41239718	-	PAX3	chr2	223066911	-
In-frame	ENST00000305877	ENST00000318560		ChiTaRS3.1			EF158045	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
In-frame	ENST00000359540	ENST00000318560		ChiTaRS3.1			EF158045	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000398512	ENST00000318560		ChiTaRS3.1			EF158045	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-3CDS	ENST00000436990	ENST00000318560		ChiTaRS3.1			EF158045	BCR	chr22	23631808	+	ABL1	chr9	133729449	+
intron-intron	ENST00000332050	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332050	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000397938	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000406548	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000331029	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000414183	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000333395	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000332050		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000397938		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000406548		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000331029		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000414183		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000333395		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000332035	ENST00000332035		ChiTaRS3.1			AJ229257	EWSR1	chr22	29684475	+	EWSR1	chr22	29684542	-
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
5CDS-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189476	RUNX1	chr21	36265222	-	RUNX1T1	chr8	93006852	-
intron-3CDS	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189471	RUNX1	chr21	36259343	-	RUNX1T1	chr8	93017462	-
intron-3CDS	ENST00000394003	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000394003	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000394003	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000361874	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000361874	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000361874	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000407639	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000407639	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000407639	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000409438	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409438	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409438	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000409240	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409240	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409240	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000409868	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409868	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409868	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000409567	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409567	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000409567	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-3CDS	ENST00000495643	ENST00000389048		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000495643	ENST00000431873		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
intron-intron	ENST00000495643	ENST00000498037		ChiTaRS3.1			HQ993071	DCTN1	chr2	74595911	-	ALK	chr2	29446397	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795252	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795252	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795252	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795252	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-5UTR	ENST00000413953	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000413953	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000413953	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000413953	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000347140	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000347140	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000347140	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000347140	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000358907	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000358907	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000358907	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000358907	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000402412	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000402412	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000402412	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
5UTR-5UTR	ENST00000402412	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000441731	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000441731	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000441731	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000441731	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000403821	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000403821	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000403821	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000403821	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000546843	ENST00000312156		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000546843	ENST00000435572		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000546843	ENST00000540264		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
intron-5UTR	ENST00000546843	ENST00000553070		ChiTaRS3.1			GU068583	R3HDM2	chr12	57789530	-	NFE2	chr12	54689091	-
In-frame	ENST00000392069	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000392069	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000392069	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000344493	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000344493	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000344493	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000350526	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000350526	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000350526	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000336840	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000336840	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000336840	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000392070	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000392070	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000392070	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000409551	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
In-frame	ENST00000409551	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000409551	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000464706	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000464706	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-intron	ENST00000464706	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000409828	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000409828	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-intron	ENST00000409828	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000258387	ENST00000509479		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000258387	ENST00000327122		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
intron-intron	ENST00000258387	ENST00000398940		ChiTaRS3.1			KF727277	PAX3	chr2	223096797	-	MAML3	chr4	140812124	-
5CDS-5UTR	ENST00000332797	ENST00000339602		ChiTaRS3.1			KC819274	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
5CDS-5UTR	ENST00000332797	ENST00000296980		ChiTaRS3.1			KC819274	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
5CDS-5UTR	ENST00000332797	ENST00000349184		ChiTaRS3.1			KC819274	CCDC28A	chr6	139101122	+	IL22RA2	chr6	137482952	-
intron-intron	ENST00000318522	ENST00000389048		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000318522	ENST00000431873		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000318522	ENST00000498037		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000402711	ENST00000389048		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000402711	ENST00000431873		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000402711	ENST00000498037		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000482660	ENST00000389048		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000482660	ENST00000431873		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000482660	ENST00000498037		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000401738	ENST00000389048		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000401738	ENST00000431873		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000401738	ENST00000498037		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000453191	ENST00000389048		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000453191	ENST00000431873		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000453191	ENST00000498037		ChiTaRS3.1			GU797895	EML4	chr2	42532902	+	ALK	chr2	29446432	-
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138488	SS18	chr18	23610111	-	SSX2	chrX	52729933	-
3UTR-intron	ENST00000403681	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
3UTR-intron	ENST00000403681	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000541363	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393577	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000393578	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000425208	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000536545	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000539935		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000360283		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000534999		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000397327		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000427385		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000201943		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
intron-intron	ENST00000354636	ENST00000475848		ChiTaRS3.1			FJ469146	HMGA2	chr12	66357169	+	CACNB4	chr2	152897521	-
5UTR-3CDS	ENST00000518836	ENST00000261799		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
5UTR-intron	ENST00000518836	ENST00000523456		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
In-frame	ENST00000313708	ENST00000261799		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
5CDS-intron	ENST00000313708	ENST00000523456		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
In-frame	ENST00000380654	ENST00000261799		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
5CDS-intron	ENST00000380654	ENST00000523456		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
In-frame	ENST00000517373	ENST00000261799		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
5CDS-intron	ENST00000517373	ENST00000523456		ChiTaRS3.1			JN003579	EBF1	chr5	158134987	-	PDGFRB	chr5	149506179	-
intron-3UTR	ENST00000504570	ENST00000449886		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000504570	ENST00000373464		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000504570	ENST00000373457		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000504570	ENST00000497064		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-3UTR	ENST00000382051	ENST00000449886		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-3UTR	ENST00000382051	ENST00000373464		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-intron	ENST00000382051	ENST00000373457		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
3UTR-intron	ENST00000382051	ENST00000497064		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000503434	ENST00000449886		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000503434	ENST00000373464		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000503434	ENST00000373457		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000503434	ENST00000497064		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000510033	ENST00000449886		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-3UTR	ENST00000510033	ENST00000373464		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000510033	ENST00000373457		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000510033	ENST00000497064		ChiTaRS3.1			BC146666	SLC34A2	chr4	25679926	+	ZBTB43	chr9	129600373	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			AJ229265	FLI1	chr11	128653521	+	EWSR1	chr22	29683664	+
5CDS-intron	ENST00000332797	ENST00000339602		ChiTaRS3.1			KC819275	CCDC28A	chr6	139101124	+	IL22RA2	chr6	137484017	-
5CDS-intron	ENST00000332797	ENST00000296980		ChiTaRS3.1			KC819275	CCDC28A	chr6	139101124	+	IL22RA2	chr6	137484017	-
5CDS-intron	ENST00000332797	ENST00000349184		ChiTaRS3.1			KC819275	CCDC28A	chr6	139101124	+	IL22RA2	chr6	137484017	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795253	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795253	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795253	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795253	KIF5B	chr10	32307243	-	RET	chr10	43612030	+
Frame-shit	ENST00000357847	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000357847	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000357847	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000357847	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000357847	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000344492	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000344492	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000344492	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000344492	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3UTR	ENST00000344492	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000275235	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000275235	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000275235	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000275235	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000275235	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000367598	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000367598	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000367598	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000367598	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000367598	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000494282	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
Frame-shit	ENST00000494282	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000494282	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-5UTR	ENST00000494282	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
5CDS-3UTR	ENST00000494282	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000367596	ENST00000225724		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000367596	ENST00000451249		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000367596	ENST00000467337		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-5UTR	ENST00000367596	ENST00000581721		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3UTR	ENST00000367596	ENST00000579905		ChiTaRS3.1			KC119452	AIG1	chr6	143458127	+	GOSR1	chr17	28808161	+
intron-3CDS	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189469	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000317089	ENST00000562435		ChiTaRS3.1			KF612913	DNAJA2	chr16	47005261	-	NETO2	chr16	47117712	-
Frame-shit	ENST00000317089	ENST00000303155		ChiTaRS3.1			KF612913	DNAJA2	chr16	47005261	-	NETO2	chr16	47117712	-
5UTR-5UTR	ENST00000216181	ENST00000332776		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000216181	ENST00000574788		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000216181	ENST00000304328		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
5UTR-5UTR	ENST00000216181	ENST00000250066		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
5UTR-intron	ENST00000216181	ENST00000572429		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000475726	ENST00000332776		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000475726	ENST00000574788		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000475726	ENST00000304328		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000475726	ENST00000250066		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-intron	ENST00000475726	ENST00000572429		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000401701	ENST00000332776		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000401701	ENST00000574788		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000401701	ENST00000304328		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-5UTR	ENST00000401701	ENST00000250066		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-intron	ENST00000401701	ENST00000572429		ChiTaRS3.1			HQ326700	MYH9	chr22	36783851	-	USP6	chr17	5033229	+
intron-3CDS	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
Frame-shit	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-3CDS	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
5UTR-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-3CDS	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189467	RUNX1	chr21	36421138	-	RUNX1T1	chr8	92999202	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795250	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795250	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795250	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795250	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
Frame-shit	ENST00000589037	ENST00000393193		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000589037	ENST00000376392		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000589037	ENST00000555572		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
Frame-shit	ENST00000253788	ENST00000393193		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000253788	ENST00000376392		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000253788	ENST00000555572		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
Frame-shit	ENST00000589913	ENST00000393193		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000589913	ENST00000376392		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000589913	ENST00000555572		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
Frame-shit	ENST00000590864	ENST00000393193		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000590864	ENST00000376392		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
5CDS-3UTR	ENST00000590864	ENST00000555572		ChiTaRS3.1			FJ655906	RPL27	chr17	41154765	+	NME2	chr17	49248882	+
In-frame	ENST00000263102	ENST00000355710		ChiTaRS3.1			AB698669	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		ChiTaRS3.1			AB698669	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000395811	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395811	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000395811	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000444976	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000444976	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000395804	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000395804	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
In-frame	ENST00000341712	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
5CDS-intron	ENST00000341712	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395806	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-intron	ENST00000395806	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000392302		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000368196		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000524377		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000395807	ENST00000358660		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-intron	ENST00000395807	ENST00000531606		ChiTaRS3.1			HG532017	MPRIP	chr17	17080727	+	NTRK1	chr1	156845311	+
intron-3CDS	ENST00000398907	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398907	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398905	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000288319	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398897	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398911	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398910	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000417133	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000442448	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000453032	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000398919	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000429727	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000332050		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000397938		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000406548		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000331029		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000414183		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000333395		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000485493	ENST00000332035		ChiTaRS3.1			S82338	ERG	chr21	39762959	-	EWSR1	chr22	29682948	+
intron-3CDS	ENST00000274364	ENST00000331163		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000274364	ENST00000381551		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000379730	ENST00000331163		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000379730	ENST00000381551		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000396234	ENST00000331163		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000396234	ENST00000381551		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000502745	ENST00000331163		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000502745	ENST00000381551		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000508410	ENST00000331163		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
intron-3CDS	ENST00000508410	ENST00000381551		ChiTaRS3.1			K01400	IQGAP2	chr5	75943139	-	PDGFB	chr22	39626239	-
5CDS-intron	ENST00000534358	ENST00000524717		ChiTaRS3.1			DQ886023	KMT2A	chr11	118355029	+	MAML2	chr11	95826688	-
5CDS-intron	ENST00000389506	ENST00000524717		ChiTaRS3.1			DQ886023	KMT2A	chr11	118355029	+	MAML2	chr11	95826688	-
5CDS-intron	ENST00000354520	ENST00000524717		ChiTaRS3.1			DQ886023	KMT2A	chr11	118355029	+	MAML2	chr11	95826688	-
3UTR-intron	ENST00000420751	ENST00000524717		ChiTaRS3.1			DQ886023	KMT2A	chr11	118355029	+	MAML2	chr11	95826688	-
5UTR-5UTR	ENST00000216181	ENST00000332776		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000216181	ENST00000574788		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000216181	ENST00000304328		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
5UTR-5UTR	ENST00000216181	ENST00000250066		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
5UTR-intron	ENST00000216181	ENST00000572429		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000475726	ENST00000332776		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000475726	ENST00000574788		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000475726	ENST00000304328		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000475726	ENST00000250066		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-intron	ENST00000475726	ENST00000572429		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000401701	ENST00000332776		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000401701	ENST00000574788		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000401701	ENST00000304328		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-5UTR	ENST00000401701	ENST00000250066		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-intron	ENST00000401701	ENST00000572429		ChiTaRS3.1			HQ326701	MYH9	chr22	36783851	-	USP6	chr17	5033659	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			AJ229263	FLI1	chr11	128647310	+	EWSR1	chr22	29684764	+
Frame-shit	ENST00000317089	ENST00000562435		ChiTaRS3.1			KF612912	DNAJA2	chr16	47005261	-	NETO2	chr16	47120250	-
Frame-shit	ENST00000317089	ENST00000303155		ChiTaRS3.1			KF612912	DNAJA2	chr16	47005261	-	NETO2	chr16	47120250	-
In-frame	ENST00000369061	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369061	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369061	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000357555	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000357555	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000357555	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000358487	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000358487	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000358487	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000356226	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000356226	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000356226	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000369060	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369060	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369060	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000369059	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369059	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369059	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
In-frame	ENST00000346997	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000346997	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000346997	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000457416	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000457416	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000457416	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000351936	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000351936	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000351936	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000360144	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000360144	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000360144	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
In-frame	ENST00000369056	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369056	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000369056	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-3CDS	ENST00000490349	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-intron	ENST00000490349	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-intron	ENST00000490349	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-3CDS	ENST00000359354	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-intron	ENST00000359354	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
intron-intron	ENST00000359354	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
Frame-shit	ENST00000478859	ENST00000373886		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000478859	ENST00000263103		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000478859	ENST00000476684		ChiTaRS3.1			AB821310	FGFR2	chr10	123243212	-	BICC1	chr10	60461832	+
5CDS-intron	ENST00000348405	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000348405	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000348405	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000348405	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000348405	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000348405	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000513858	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000395310	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000443462	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000509142	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000326950	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000432794	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000311785	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
5CDS-intron	ENST00000448323	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505472	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000500777	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508502	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000355196	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000264405	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000505984	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000508479	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000506140		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000515571		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000382599		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000507294		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000314348		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000436790	ENST00000335585		ChiTaRS3.1			AL049463	SEC31A	chr4	83739814	-	PPP2R2C	chr4	6410627	-
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138493	SS18	chr18	23610908	-	SSX2	chrX	52731097	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
5CDS-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			AJ229255	EWSR1	chr22	29684688	+	FLI1	chr11	128646996	+
intron-intron	ENST00000525560	ENST00000332050		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000397938		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000406548		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000331029		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000414183		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000333395		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000525560	ENST00000332035		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000332050		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000397938		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000406548		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000331029		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000414183		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000333395		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000344954	ENST00000332035		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000332050		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000397938		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000406548		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000331029		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000414183		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000333395		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000527786	ENST00000332035		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000332050		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000397938		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000406548		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000331029		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000414183		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000333395		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000534087	ENST00000332035		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000332050		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000397938		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000406548		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000331029		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000414183		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000333395		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-intron	ENST00000281428	ENST00000332035		ChiTaRS3.1			AJ229256	FLI1	chr11	128646994	+	EWSR1	chr22	29684685	+
intron-3CDS	ENST00000460934	ENST00000288602		ChiTaRS3.1			GU149303	SLC45A3	chr1	205649521	-	BRAF	chr7	140494271	-
5UTR-3CDS	ENST00000367145	ENST00000288602		ChiTaRS3.1			GU149303	SLC45A3	chr1	205649521	-	BRAF	chr7	140494271	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
5CDS-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			AJ229262	EWSR1	chr22	29684744	+	FLI1	chr11	128647366	+
intron-3CDS	ENST00000415083	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000542420	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000542743	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000539849	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000269137	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000545952	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-3CDS	ENST00000585241	ENST00000376919		ChiTaRS3.1			AF402618	SS18	chr18	23603577	-	SSX1	chrX	48123278	+
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
5CDS-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189464	RUNX1	chr21	36265221	-	RUNX1T1	chr8	92992160	-
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189465	RUNX1	chr21	36259338	-	RUNX1T1	chr8	93019671	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			AJ229264	EWSR1	chr22	29683849	+	FLI1	chr11	128653317	+
In-frame	ENST00000383836	ENST00000251849		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
In-frame	ENST00000383836	ENST00000442415		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
In-frame	ENST00000383836	ENST00000534997		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
In-frame	ENST00000383836	ENST00000542177		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
intron-3CDS	ENST00000360413	ENST00000251849		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
intron-3CDS	ENST00000360413	ENST00000442415		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
intron-3CDS	ENST00000360413	ENST00000534997		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
intron-3CDS	ENST00000360413	ENST00000542177		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
5UTR-3CDS	ENST00000433332	ENST00000251849		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
5UTR-3CDS	ENST00000433332	ENST00000442415		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
5UTR-3CDS	ENST00000433332	ENST00000534997		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
5UTR-3CDS	ENST00000433332	ENST00000542177		ChiTaRS3.1			FM209427	SRGAP3	chr3	9074334	-	RAF1	chr3	12641309	-
intron-intron	ENST00000391759	ENST00000446828		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000424227		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000443863		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000535426		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000265026		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000448876		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000454237		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000438798		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000446828		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000424227		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000443863		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000535426		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000265026		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000448876		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000454237		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000438798		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000446828		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000424227		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000443863		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000535426		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000265026		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000448876		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000454237		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000438798		ChiTaRS3.1			BC007776	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
3UTR-intron	ENST00000508628	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000508628	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000508628	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000508628	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000508628	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000456466	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000456466	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000456466	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000456466	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000456466	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000582970	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000582970	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000582970	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000582970	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000582970	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000319921	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000319921	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000319921	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000319921	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
intron-intron	ENST00000319921	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000336301	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000336301	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000336301	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000336301	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000336301	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000427003	ENST00000497343		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000427003	ENST00000498165		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000427003	ENST00000464260		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000427003	ENST00000295839		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
3UTR-intron	ENST00000427003	ENST00000480117		ChiTaRS3.1			AK025676	RNF213	chr17	78368151	+	PPM1L	chr3	160744481	+
5CDS-intron	ENST00000361189	ENST00000536402		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361189	ENST00000281092		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361189	ENST00000502752		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361189	ENST00000438717		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361557	ENST00000536402		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361557	ENST00000281092		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361557	ENST00000502752		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000361557	ENST00000438717		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
intron-intron	ENST00000511624	ENST00000536402		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
intron-intron	ENST00000511624	ENST00000281092		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
intron-intron	ENST00000511624	ENST00000502752		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
intron-intron	ENST00000511624	ENST00000438717		ChiTaRS3.1			AB636596	PJA2	chr5	108691615	-	FER	chr5	108373121	+
5CDS-intron	ENST00000348405	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000348405	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000513858	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000395310	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000443462	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000509142	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000326950	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000432794	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000311785	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
5CDS-intron	ENST00000448323	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505472	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000500777	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508502	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000355196	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000264405	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000505984	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000508479	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000369760		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000356489		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000320393		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000545529		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
intron-intron	ENST00000436790	ENST00000486968		ChiTaRS3.1			AF161452	SEC31A	chr4	83739814	-	BCKDHB	chr6	80865576	-
In-frame	ENST00000263102	ENST00000355710		ChiTaRS3.1			AB698668	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000263102	ENST00000340058		ChiTaRS3.1			AB698668	CCDC6	chr10	61665879	-	RET	chr10	43612032	+
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795249	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795249	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795249	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795249	KIF5B	chr10	32317355	-	RET	chr10	43612030	+
intron-intron	ENST00000440491	ENST00000370192		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000440491	ENST00000474241		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000440491	ENST00000423006		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000440491	ENST00000306031		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000338347	ENST00000370192		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000338347	ENST00000474241		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000338347	ENST00000423006		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000338347	ENST00000306031		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000468645	ENST00000370192		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000468645	ENST00000474241		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000468645	ENST00000423006		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000468645	ENST00000306031		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000281815	ENST00000370192		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000281815	ENST00000474241		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000281815	ENST00000423006		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
intron-intron	ENST00000281815	ENST00000306031		ChiTaRS3.1			AB042557	NBPF9	chr1	144951765	-	DPYD	chr1	97956375	+
In-frame	ENST00000392069	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000392069	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000392069	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000344493	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000344493	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000344493	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000350526	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000350526	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000350526	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000336840	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000336840	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000336840	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000392070	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000392070	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000392070	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000409551	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
In-frame	ENST00000409551	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5CDS-intron	ENST00000409551	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5UTR-3CDS	ENST00000464706	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5UTR-3CDS	ENST00000464706	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
5UTR-intron	ENST00000464706	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000409828	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000409828	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-intron	ENST00000409828	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000258387	ENST00000509479		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-3CDS	ENST00000258387	ENST00000327122		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-intron	ENST00000258387	ENST00000398940		ChiTaRS3.1			KF727276	PAX3	chr2	223084859	-	MAML3	chr4	140812124	-
intron-intron	ENST00000391759	ENST00000446828		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000424227		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000443863		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000535426		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000265026		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000448876		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000454237		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
intron-intron	ENST00000391759	ENST00000438798		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000446828		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000424227		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000443863		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000535426		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000265026		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000448876		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000454237		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391758	ENST00000438798		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000446828		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000424227		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000443863		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000535426		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000265026		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000448876		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000454237		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-intron	ENST00000391757	ENST00000438798		ChiTaRS3.1			BC004281	TFPT	chr19	54610327	-	MAP3K13	chr3	185125691	-
5CDS-3UTR	ENST00000322564	ENST00000555245		ChiTaRS3.1			KF612915	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000556605		ChiTaRS3.1			KF612915	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000336643		ChiTaRS3.1			KF612915	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000031146		ChiTaRS3.1			KF612915	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
5CDS-3UTR	ENST00000322564	ENST00000557046		ChiTaRS3.1			KF612915	PLEKHD1	chr14	69969597	+	SLC39A9	chr14	69922447	+
intron-intron	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
5UTR-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189475	RUNX1	chr21	36421139	-	RUNX1T1	chr8	93006853	-
In-frame	ENST00000534358	ENST00000446906		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000534358	ENST00000377072		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000534358	ENST00000307729		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000534358	ENST00000377059		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000534358	ENST00000495130		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000534358	ENST00000377100		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000534358	ENST00000377091		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000389506	ENST00000446906		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000389506	ENST00000377072		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000389506	ENST00000307729		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000389506	ENST00000377059		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000389506	ENST00000495130		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000389506	ENST00000377100		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000389506	ENST00000377091		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000354520	ENST00000446906		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000354520	ENST00000377072		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000354520	ENST00000307729		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
In-frame	ENST00000354520	ENST00000377059		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000354520	ENST00000495130		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000354520	ENST00000377100		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
5CDS-intron	ENST00000354520	ENST00000377091		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-3CDS	ENST00000420751	ENST00000446906		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-3CDS	ENST00000420751	ENST00000377072		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-3CDS	ENST00000420751	ENST00000307729		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-3CDS	ENST00000420751	ENST00000377059		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-intron	ENST00000420751	ENST00000495130		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-intron	ENST00000420751	ENST00000377100		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
3UTR-intron	ENST00000420751	ENST00000377091		ChiTaRS3.1			KF778381	KMT2A	chr11	118352809	+	MLLT10	chr10	22002698	+
intron-3CDS	ENST00000519301	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000519301	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000519301	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000519301	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000519301	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000520407	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
5CDS-intron	ENST00000520407	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
5CDS-intron	ENST00000520407	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
5CDS-intron	ENST00000520407	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523079	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523079	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523079	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523079	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000338921	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000338921	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000338921	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000338921	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000356819	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000356819	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000356819	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000356819	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287845	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287845	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287845	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287845	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000341377	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000341377	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000341377	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000341377	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000287842	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287842	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287842	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000287842	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000521670	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000521670	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000521670	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000521670	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000405005	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000405005	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000405005	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000405005	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000520502	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000520502	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000520502	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000520502	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000539990	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000539990	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000539990	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000539990	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000519301		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000520407		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000523079		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000338921		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000356819		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000287845		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000341377		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000287842		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000521670		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-3CDS	ENST00000523681	ENST00000405005		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523681	ENST00000520502		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523681	ENST00000539990		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
intron-intron	ENST00000523681	ENST00000523681		ChiTaRS3.1			L12260	NRG1	chr8	31498245	+	NRG1	chr8	32453345	+
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795256	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795256	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795256	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
5UTR-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795256	KIF5B	chr10	32306979	-	RET	chr10	43612030	+
intron-intron	ENST00000550418	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000550418	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000550418	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000550418	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000550418	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000553186	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000553186	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000553186	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000553186	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000553186	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547372	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547372	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547372	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547372	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547372	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000422070	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000422070	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000422070	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000422070	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000422070	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000535565	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000535565	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000535565	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000535565	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000535565	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547427	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547427	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547427	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547427	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547427	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000552089	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000552089	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000552089	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000552089	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000552089	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547338	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547338	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547338	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547338	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000547338	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000436368	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000436368	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000436368	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000436368	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000436368	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000311745	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000311745	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000311745	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000311745	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000311745	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000355637	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000355637	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000355637	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000355637	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000355637	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000340209	ENST00000395965		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000340209	ENST00000505869		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000340209	ENST00000509739		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000340209	ENST00000509163		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
intron-intron	ENST00000340209	ENST00000504768		ChiTaRS3.1			J02590	RBFOX1	chr16	5416309	-	FAM172A	chr5	93018764	-
In-frame	ENST00000225792	ENST00000319349		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000225792	ENST00000393664		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000225792	ENST00000538265		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000225792	ENST00000545954		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000225792	ENST00000545089		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000225792	ENST00000591713		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
5CDS-intron	ENST00000225792	ENST00000586826		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000319349		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000393664		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000538265		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000545954		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000545089		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000450599	ENST00000591713		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-intron	ENST00000450599	ENST00000586826		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000319349		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000393664		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000538265		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000545954		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000545089		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000578804	ENST00000591713		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
5CDS-intron	ENST00000578804	ENST00000586826		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000319349		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000393664		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000538265		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000545954		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000545089		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-3CDS	ENST00000580026	ENST00000591713		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
intron-intron	ENST00000580026	ENST00000586826		ChiTaRS3.1			EU599085	DDX5	chr17	62500340	-	ETV4	chr17	41613848	-
In-frame	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795251	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
In-frame	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795251	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795251	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795251	KIF5B	chr10	32311775	-	RET	chr10	43612032	+
Frame-shit	ENST00000570896	ENST00000302422		ChiTaRS3.1			HQ696959	TNK1	chr17	7290473	+	TMEM256	chr17	7307457	-
Frame-shit	ENST00000576812	ENST00000302422		ChiTaRS3.1			HQ696959	TNK1	chr17	7290473	+	TMEM256	chr17	7307457	-
Frame-shit	ENST00000311668	ENST00000302422		ChiTaRS3.1			HQ696959	TNK1	chr17	7290473	+	TMEM256	chr17	7307457	-
5CDS-intron	ENST00000395135	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000395135	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000395135	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000395135	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000395135	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000395135	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000395132	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268059	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000354026	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000268058	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000565898	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569477	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000569965	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000567543	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000435786	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000436891	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000564428	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000359928	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
5CDS-intron	ENST00000563500	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000254066		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000394089		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000425707		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000394086		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000394081		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
intron-intron	ENST00000569161	ENST00000420042		ChiTaRS3.1			AB067754	PML	chr15	74325609	+	RARA	chr17	38503513	+
Frame-shit	ENST00000361570	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000304494	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
Frame-shit	ENST00000579755	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000579122	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000578845	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
Frame-shit	ENST00000530628	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000498124	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000498628	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000494262	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000446177	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000479692	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000497750	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
intron-3CDS	ENST00000470819	ENST00000434783		ChiTaRS3.1			JX456221	CDKN2A	chr9	21994136	-	FAM230A	chr22	20695277	+
5CDS-intron	ENST00000254108	ENST00000254108		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000254108	ENST00000380244		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000254108	ENST00000568685		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000254108	ENST00000474990		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000380244	ENST00000254108		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000380244	ENST00000380244		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000380244	ENST00000568685		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000380244	ENST00000474990		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000568685	ENST00000254108		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000568685	ENST00000380244		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000568685	ENST00000568685		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
5CDS-intron	ENST00000568685	ENST00000474990		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
intron-intron	ENST00000474990	ENST00000254108		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
intron-intron	ENST00000474990	ENST00000380244		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
intron-intron	ENST00000474990	ENST00000568685		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
intron-intron	ENST00000474990	ENST00000474990		ChiTaRS3.1			AJ549097	FUS	chr16	31196358	+	FUS	chr16	31199514	-
intron-intron	ENST00000336777	ENST00000415083		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000542420		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000542743		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000539849		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000269137		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000545952		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000336777	ENST00000585241		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000415083		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000542420		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000542743		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000539849		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000269137		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000545952		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000337502	ENST00000585241		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000415083		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000542420		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000542743		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000539849		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000269137		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000545952		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
intron-intron	ENST00000476392	ENST00000585241		ChiTaRS3.1			AY138494	SSX2	chrX	52731210	-	SS18	chr18	23610894	-
In-frame	ENST00000332050	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332050	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000397938	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000406548	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000331029	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000414183	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000333395	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000379079		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000332351		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000530998		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000332035	ENST00000448076		ChiTaRS3.1			S79672	EWSR1	chr22	29683128	+	WT1	chr11	32414301	-
In-frame	ENST00000507166	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
5CDS-intron	ENST00000507166	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
In-frame	ENST00000358575	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
5CDS-intron	ENST00000358575	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
In-frame	ENST00000337488	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
5CDS-intron	ENST00000337488	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
In-frame	ENST00000507922	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
5CDS-intron	ENST00000507922	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
In-frame	ENST00000306932	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
5CDS-intron	ENST00000306932	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
intron-3CDS	ENST00000510668	ENST00000257290		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
intron-intron	ENST00000510668	ENST00000508170		ChiTaRS3.1			AY229892	FIP1L1	chr4	54292132	+	PDGFRA	chr4	55141089	+
Frame-shit	ENST00000302418	ENST00000355710		ChiTaRS3.1			AB795257	KIF5B	chr10	32306071	-	RET	chr10	43609927	+
Frame-shit	ENST00000302418	ENST00000340058		ChiTaRS3.1			AB795257	KIF5B	chr10	32306071	-	RET	chr10	43609927	+
intron-3CDS	ENST00000493889	ENST00000355710		ChiTaRS3.1			AB795257	KIF5B	chr10	32306071	-	RET	chr10	43609927	+
intron-3CDS	ENST00000493889	ENST00000340058		ChiTaRS3.1			AB795257	KIF5B	chr10	32306071	-	RET	chr10	43609927	+
In-frame	ENST00000534358	ENST00000395146		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
In-frame	ENST00000534358	ENST00000307808		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000534358	ENST00000544085		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000534358	ENST00000511996		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000395146		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
In-frame	ENST00000389506	ENST00000307808		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000389506	ENST00000544085		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000389506	ENST00000511996		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
In-frame	ENST00000354520	ENST00000395146		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
In-frame	ENST00000354520	ENST00000307808		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-5UTR	ENST00000354520	ENST00000544085		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
5CDS-intron	ENST00000354520	ENST00000511996		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000395146		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
intron-3CDS	ENST00000420751	ENST00000307808		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
intron-5UTR	ENST00000420751	ENST00000544085		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
intron-intron	ENST00000420751	ENST00000511996		ChiTaRS3.1			JN169752	KMT2A	chr11	118359475	+	AFF1	chr4	88005270	+
intron-intron	ENST00000415083	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000415083	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000415083	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542420	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542420	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542420	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542743	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542743	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000542743	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000539849	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000539849	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000539849	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000269137	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000269137	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000269137	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000545952	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000545952	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000545952	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000585241	ENST00000336777		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000585241	ENST00000337502		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
intron-intron	ENST00000585241	ENST00000476392		ChiTaRS3.1			AY138489	SS18	chr18	23611274	-	SSX2	chrX	52731046	-
Frame-shit	ENST00000309042	ENST00000250454		ChiTaRS3.1			KF429249	REST	chr4	57777702	+	EAPP	chr14	34994015	-
3UTR-3CDS	ENST00000514063	ENST00000250454		ChiTaRS3.1			KF429249	REST	chr4	57777702	+	EAPP	chr14	34994015	-
intron-intron	ENST00000332050	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332050	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332050	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332050	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332050	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000397938	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000397938	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000397938	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000397938	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000397938	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000406548	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000406548	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000406548	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000406548	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000406548	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000331029	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000331029	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000331029	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000331029	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000331029	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000414183	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000414183	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000414183	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000414183	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000414183	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000333395	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000333395	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000333395	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000333395	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000333395	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332035	ENST00000525560		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332035	ENST00000344954		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332035	ENST00000527786		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332035	ENST00000534087		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-intron	ENST00000332035	ENST00000281428		ChiTaRS3.1			AJ229259	EWSR1	chr22	29683942	+	FLI1	chr11	128659590	+
intron-3CDS	ENST00000344691	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000344691	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000344691	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000325074	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000325074	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000437180	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000437180	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000437180	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000437180	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000300305	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
Frame-shit	ENST00000300305	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
In-frame	ENST00000300305	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5CDS-intron	ENST00000300305	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000399240	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000399240	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-3CDS	ENST00000486278	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
5UTR-intron	ENST00000486278	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000494829	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000494829	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000523629		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000396218		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000265814		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000360348		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000436581		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000520724		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000358356	ENST00000518844		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000522163		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000422361		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-intron	ENST00000358356	ENST00000521553		ChiTaRS3.1			KJ189466	RUNX1	chr21	36421139	-	RUNX1T1	chr8	92972747	-
intron-3CDS	ENST00000378455	ENST00000376042		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378455	ENST00000376038		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378455	ENST00000348603		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378455	ENST00000276014		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378455	ENST00000493507		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-3CDS	ENST00000342274	ENST00000376042		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000342274	ENST00000376038		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000342274	ENST00000348603		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000342274	ENST00000276014		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000342274	ENST00000493507		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-3CDS	ENST00000378463	ENST00000376042		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378463	ENST00000376038		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378463	ENST00000348603		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378463	ENST00000276014		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378463	ENST00000493507		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-3CDS	ENST00000397354	ENST00000376042		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000397354	ENST00000376038		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000397354	ENST00000348603		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000397354	ENST00000276014		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000397354	ENST00000493507		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-3CDS	ENST00000378444	ENST00000376042		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378444	ENST00000376038		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378444	ENST00000348603		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378444	ENST00000276014		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000378444	ENST00000493507		ChiTaRS3.1			JN813375	BCOR	chrX	39911352	-	CCNB3	chrX	50051504	+
intron-intron	ENST00000472876	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000472876	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000472876	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395527	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395527	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395527	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395529	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395529	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395529	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000261503	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000261503	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000261503	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000395530	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000395530	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
3UTR-intron	ENST00000395530	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000536879	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000536879	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000536879	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395522	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395522	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395522	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395525	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395525	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000395525	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000584527	ENST00000409558		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000584527	ENST00000272322		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
intron-intron	ENST00000584527	ENST00000354504		ChiTaRS3.1			BC021123	SPECC1	chr17	20217959	+	VPS54	chr2	64175581	-
5CDS-intron	ENST00000514814	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000514814	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000514814	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000514814	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000396679	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000396679	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000396679	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000396679	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000242872	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000242872	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000242872	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
5CDS-intron	ENST00000242872	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000508421	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000508421	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000508421	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000508421	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510693	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510693	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510693	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510693	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000506282	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000506282	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000506282	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000506282	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510354	ENST00000509176		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510354	ENST00000333691		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510354	ENST00000432775		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000510354	ENST00000504150		ChiTaRS3.1			BC005400	CENPK	chr5	64813594	-	CCSER1	chr4	91495434	-
intron-intron	ENST00000321949	ENST00000507866		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000321949	ENST00000511199		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000321949	ENST00000329016		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000338797	ENST00000507866		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000338797	ENST00000511199		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000338797	ENST00000329016		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000594658	ENST00000507866		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000594658	ENST00000511199		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000594658	ENST00000329016		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000601916	ENST00000507866		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000601916	ENST00000511199		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000601916	ENST00000329016		ChiTaRS3.1			AC003107	CRTC1	chr19	18910251	+	SORCS2	chr4	7558763	-
intron-intron	ENST00000550629	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000550629	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000550629	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000550629	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000550629	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000550629	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000465950	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000369367	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000549162	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
5CDS-intron	ENST00000419565	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395454	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000471014		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000405570		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000396183		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000349496		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000453024		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000395453	ENST00000396185		ChiTaRS3.1			AF130085	SCAF11	chr12	46325288	+	CTNNB1	chr3	41277163	+
intron-intron	ENST00000262367	ENST00000367674		ChiTaRS3.1			U89354	CREBBP	chr16	3777548	-	TNR	chr1	175441100	+
intron-intron	ENST00000262367	ENST00000263525		ChiTaRS3.1			U89354	CREBBP	chr16	3777548	-	TNR	chr1	175441100	+
intron-intron	ENST00000382070	ENST00000367674		ChiTaRS3.1			U89354	CREBBP	chr16	3777548	-	TNR	chr1	175441100	+
intron-intron	ENST00000382070	ENST00000263525		ChiTaRS3.1			U89354	CREBBP	chr16	3777548	-	TNR	chr1	175441100	+
3UTR-3CDS	ENST00000430624	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000430624	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000430624	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000430624	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000430624	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000430624	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000430624	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000432329	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000432329	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000432329	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000432329	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000432329	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000432329	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000432329	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000353267	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000353267	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000353267	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000353267	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000353267	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000353267	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000353267	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000536726	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000536726	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000536726	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000536726	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000536726	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000536726	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000536726	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000374397	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000374397	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000374397	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-3CDS	ENST00000374397	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000374397	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000374397	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
3UTR-intron	ENST00000374397	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000539789	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000539789	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000539789	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000539789	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000539789	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000539789	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000539789	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000451164	ENST00000430624		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000451164	ENST00000432329		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000451164	ENST00000353267		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-3CDS	ENST00000451164	ENST00000536726		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000451164	ENST00000374397		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000451164	ENST00000539789		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000451164	ENST00000451164		ChiTaRS3.1			X55545	CREB1	chr2	208461798	+	CREB1	chr2	208435018	+
intron-intron	ENST00000229729	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000229729	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000229729	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000229729	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000544672	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000544672	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000544672	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000544672	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000375562	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000375562	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000375562	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000375562	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000465707	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000465707	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000465707	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000465707	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000417894	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000417894	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000417894	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000417894	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550821	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550821	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550821	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550821	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550401	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550401	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550401	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000550401	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000492911	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000492911	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000492911	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000492911	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000453831	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000453831	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000453831	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000453831	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000546461	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000546461	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000546461	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000546461	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000551168	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000551168	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000551168	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000551168	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495620	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495620	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495620	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495620	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000425238	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000425238	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000425238	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000425238	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000548188	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000548188	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000548188	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000548188	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549663	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549663	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549663	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549663	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000469478	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000469478	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000469478	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000469478	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000415517	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000415517	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000415517	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000415517	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547288	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547288	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547288	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547288	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547493	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547493	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547493	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547493	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000463111	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000463111	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000463111	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000463111	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000383379	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000383379	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000383379	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000383379	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547684	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547684	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547684	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000547684	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549677	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549677	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549677	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000549677	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000497745	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000497745	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000497745	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000497745	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000366281	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000366281	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000366281	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000366281	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000442152	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000442152	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000442152	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000442152	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553147	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553147	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553147	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553147	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553121	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553121	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553121	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
5CDS-intron	ENST00000553121	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495181	ENST00000358602		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495181	ENST00000509867		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495181	ENST00000330838		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000495181	ENST00000514252		ChiTaRS3.1			BC014659	SLC44A4	chr6	3163722	-	ANKRD17	chr4	74084357	+
intron-intron	ENST00000347370	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000347370	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000347370	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000347370	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000347370	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000347370	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000349431	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000339385	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000348298	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400929	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000360466	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000400930	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000544935		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000537384		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000406797		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000403562		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000360274		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000491779	ENST00000488474		ChiTaRS3.1			X60483	UBE2J2	chr1	1450751	+	PRKAR1B	chr7	598131	-
intron-intron	ENST00000371322	ENST00000225296		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000371322	ENST00000433302		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000336592	ENST00000225296		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000336592	ENST00000433302		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000404115	ENST00000225296		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000404115	ENST00000433302		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000486604	ENST00000225296		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
intron-intron	ENST00000486604	ENST00000433302		ChiTaRS3.1			AY128657	CUL4B	chrX	119697349	+	DHX33	chr17	5360841	-
